Query 012257
Match_columns 467
No_of_seqs 270 out of 3123
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 05:51:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.2E-45 4E-50 337.9 30.7 253 37-410 20-274 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.2E-45 7.4E-50 337.5 25.3 256 30-400 32-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 5E-35 1.7E-39 254.7 19.5 171 37-208 13-183 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 1.4E-32 4.8E-37 230.4 20.6 164 40-204 1-165 (166)
5 4f02_A Polyadenylate-binding p 100.0 1.7E-32 6E-37 238.6 21.5 174 217-407 14-188 (213)
6 1b7f_A Protein (SXL-lethal pro 100.0 3.8E-32 1.3E-36 228.2 21.1 163 38-202 2-167 (168)
7 1fxl_A Paraneoplastic encephal 100.0 5.9E-32 2E-36 226.9 21.9 163 38-202 1-166 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 5.2E-32 1.8E-36 233.5 20.8 175 34-210 8-187 (196)
9 2qfj_A FBP-interacting repress 100.0 7.5E-32 2.6E-36 236.2 20.1 171 37-207 26-206 (216)
10 3nmr_A Cugbp ELAV-like family 100.0 3.9E-31 1.3E-35 223.7 21.0 165 38-203 2-174 (175)
11 2cjk_A Nuclear polyadenylated 100.0 7.1E-32 2.4E-36 226.3 13.6 165 37-206 1-166 (167)
12 3md3_A Nuclear and cytoplasmic 100.0 6.2E-31 2.1E-35 220.4 19.0 164 219-398 1-165 (166)
13 1fxl_A Paraneoplastic encephal 100.0 4.9E-30 1.7E-34 215.2 19.5 162 218-397 2-167 (167)
14 2qfj_A FBP-interacting repress 100.0 5.8E-30 2E-34 224.2 20.0 177 217-400 27-205 (216)
15 1l3k_A Heterogeneous nuclear r 100.0 6.8E-30 2.3E-34 220.2 20.1 177 215-405 10-188 (196)
16 1fje_B Nucleolin RBD12, protei 100.0 3.7E-31 1.3E-35 223.6 11.8 167 34-206 8-174 (175)
17 1b7f_A Protein (SXL-lethal pro 100.0 4E-30 1.4E-34 215.8 17.8 162 218-397 3-168 (168)
18 2g4b_A Splicing factor U2AF 65 100.0 1.4E-29 4.9E-34 213.3 19.3 158 37-203 2-171 (172)
19 3nmr_A Cugbp ELAV-like family 100.0 1.5E-29 5.1E-34 213.9 18.6 164 218-398 3-175 (175)
20 3smz_A Protein raver-1, ribonu 100.0 2.3E-29 7.9E-34 229.8 20.9 172 38-209 94-267 (284)
21 3tyt_A Heterogeneous nuclear r 100.0 1.9E-29 6.4E-34 216.6 17.7 155 37-197 2-194 (205)
22 2yh0_A Splicing factor U2AF 65 100.0 3.8E-29 1.3E-33 215.9 19.4 163 37-206 2-194 (198)
23 3pgw_A U1-A; protein-RNA compl 100.0 8E-29 2.7E-33 226.0 21.0 162 35-203 5-280 (282)
24 2cjk_A Nuclear polyadenylated 100.0 1.1E-29 3.6E-34 213.0 13.1 162 218-400 3-166 (167)
25 2adc_A Polypyrimidine tract-bi 100.0 1E-28 3.4E-33 217.4 18.8 162 35-205 30-227 (229)
26 3sde_A Paraspeckle component 1 100.0 4.4E-28 1.5E-32 217.7 21.3 161 33-207 16-180 (261)
27 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-28 4.6E-33 225.7 16.8 167 38-206 116-291 (292)
28 3tyt_A Heterogeneous nuclear r 100.0 1.1E-28 3.9E-33 211.7 13.9 175 218-397 4-204 (205)
29 2g4b_A Splicing factor U2AF 65 100.0 2.3E-28 7.7E-33 205.9 15.2 156 218-397 4-171 (172)
30 1qm9_A Polypyrimidine tract-bi 100.0 2.4E-28 8.1E-33 210.6 15.5 159 38-205 2-196 (198)
31 3pgw_A U1-A; protein-RNA compl 100.0 8.8E-28 3E-32 219.1 19.5 177 216-398 7-281 (282)
32 1fje_B Nucleolin RBD12, protei 100.0 5E-29 1.7E-33 210.5 9.9 165 215-400 10-174 (175)
33 2yh0_A Splicing factor U2AF 65 100.0 6.1E-28 2.1E-32 208.3 12.9 177 218-400 4-194 (198)
34 2adc_A Polypyrimidine tract-bi 99.9 2E-27 7E-32 209.0 15.7 177 216-400 32-228 (229)
35 3sde_A Paraspeckle component 1 99.9 8.5E-27 2.9E-31 209.2 17.8 157 215-400 19-179 (261)
36 1qm9_A Polypyrimidine tract-bi 99.9 2.1E-27 7.3E-32 204.6 10.3 174 218-399 3-196 (198)
37 4f25_A Polyadenylate-binding p 99.9 4.1E-22 1.4E-26 154.4 10.5 104 38-143 4-113 (115)
38 2kn4_A Immunoglobulin G-bindin 99.9 1E-21 3.5E-26 162.1 11.0 147 248-400 3-150 (158)
39 4fxv_A ELAV-like protein 1; RN 99.9 2.5E-21 8.7E-26 145.0 10.6 81 319-399 17-98 (99)
40 4fxv_A ELAV-like protein 1; RN 99.9 3.4E-21 1.2E-25 144.3 11.1 82 37-118 17-98 (99)
41 2kn4_A Immunoglobulin G-bindin 99.8 1.7E-20 5.7E-25 154.8 14.2 138 68-207 2-151 (158)
42 3s8s_A Histone-lysine N-methyl 99.8 3.9E-20 1.3E-24 141.2 13.8 92 319-410 4-96 (110)
43 2i2y_A Fusion protein consists 99.8 3E-21 1E-25 157.6 7.9 138 256-400 10-148 (150)
44 3s8s_A Histone-lysine N-methyl 99.8 6.8E-20 2.3E-24 139.9 11.3 83 37-119 4-86 (110)
45 2lxi_A RNA-binding protein 10; 99.8 8.3E-21 2.8E-25 140.0 6.0 83 39-121 1-85 (91)
46 1u6f_A Tcubp1, RNA-binding pro 99.8 4.3E-19 1.5E-23 142.8 15.3 88 34-121 37-124 (139)
47 2lkz_A RNA-binding protein 5; 99.8 3.2E-20 1.1E-24 137.1 7.8 84 35-118 5-94 (95)
48 3n9u_C Cleavage and polyadenyl 99.8 8.1E-20 2.8E-24 148.7 10.4 82 37-118 53-136 (156)
49 2khc_A Testis-specific RNP-typ 99.8 2.6E-19 9E-24 139.7 12.8 85 32-116 33-117 (118)
50 2i2y_A Fusion protein consists 99.8 1.6E-19 5.4E-24 147.3 11.6 124 78-206 10-148 (150)
51 2e5h_A Zinc finger CCHC-type a 99.8 2.3E-19 8E-24 133.8 11.5 85 32-116 9-93 (94)
52 2cqc_A Arginine/serine-rich sp 99.8 3.5E-19 1.2E-23 133.2 12.1 87 32-118 8-94 (95)
53 2dgs_A DAZ-associated protein 99.8 4.5E-19 1.6E-23 133.6 12.7 88 34-122 5-92 (99)
54 1x5u_A Splicing factor 3B subu 99.8 3.8E-19 1.3E-23 135.7 12.4 89 34-122 10-98 (105)
55 1whw_A Hypothetical protein ri 99.8 4.3E-19 1.5E-23 133.7 12.1 87 36-122 5-91 (99)
56 2do4_A Squamous cell carcinoma 99.8 7E-19 2.4E-23 132.8 13.1 89 31-120 9-97 (100)
57 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.8E-19 9.6E-24 131.3 10.3 83 37-119 4-86 (87)
58 2cq0_A Eukaryotic translation 99.8 5E-19 1.7E-23 134.4 12.0 88 34-121 10-97 (103)
59 2dnz_A Probable RNA-binding pr 99.8 6.8E-19 2.3E-23 131.6 12.3 85 37-121 3-87 (95)
60 2lkz_A RNA-binding protein 5; 99.8 8.9E-20 3E-24 134.7 7.3 80 320-399 8-94 (95)
61 1p27_B RNA-binding protein 8A; 99.8 4.1E-19 1.4E-23 135.7 11.3 89 31-119 15-103 (106)
62 1x5s_A Cold-inducible RNA-bind 99.8 4E-19 1.4E-23 134.7 11.2 89 34-122 7-95 (102)
63 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.3E-19 1.1E-23 130.3 10.2 81 36-116 4-84 (85)
64 2dgo_A Cytotoxic granule-assoc 99.8 8.6E-19 3E-23 136.0 13.2 91 32-122 8-98 (115)
65 2dnm_A SRP46 splicing factor; 99.8 5.7E-19 1.9E-23 134.1 11.8 88 33-120 7-94 (103)
66 4f25_A Polyadenylate-binding p 99.8 3.1E-19 1.1E-23 138.1 10.3 108 126-234 4-113 (115)
67 2lxi_A RNA-binding protein 10; 99.8 4E-20 1.4E-24 136.3 5.0 79 322-400 2-83 (91)
68 3md1_A Nuclear and cytoplasmic 99.8 5.7E-19 1.9E-23 128.4 10.9 81 39-119 1-81 (83)
69 2jrs_A RNA-binding protein 39; 99.8 1.1E-18 3.7E-23 133.1 12.8 84 36-119 23-106 (108)
70 2x1f_A MRNA 3'-END-processing 99.8 4.7E-19 1.6E-23 132.6 10.6 84 38-121 1-84 (96)
71 2cph_A RNA binding motif prote 99.8 9.9E-19 3.4E-23 133.9 12.6 91 32-122 8-100 (107)
72 2kxn_B Transformer-2 protein h 99.8 4.5E-19 1.5E-23 139.7 10.9 88 32-119 39-126 (129)
73 3lqv_A PRE-mRNA branch site pr 99.8 3.5E-19 1.2E-23 138.2 10.1 104 37-153 6-109 (115)
74 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-18 4E-23 135.2 13.0 89 34-122 20-108 (115)
75 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.2E-19 1.4E-23 134.6 10.2 88 35-122 8-95 (102)
76 2wbr_A GW182, gawky, LD47780P; 99.8 4.2E-19 1.4E-23 125.1 9.3 77 320-401 6-82 (89)
77 2d9p_A Polyadenylate-binding p 99.8 1.3E-18 4.6E-23 132.0 12.8 90 31-122 7-96 (103)
78 2la6_A RNA-binding protein FUS 99.8 9.5E-19 3.2E-23 131.7 11.8 80 37-116 11-98 (99)
79 2dh8_A DAZ-associated protein 99.8 1E-18 3.4E-23 133.2 12.0 91 31-122 8-98 (105)
80 2ywk_A Putative RNA-binding pr 99.8 7.3E-19 2.5E-23 131.4 10.7 84 33-117 10-93 (95)
81 1s79_A Lupus LA protein; RRM, 99.8 6E-19 2.1E-23 132.8 10.2 85 319-404 9-93 (103)
82 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.5E-19 2.2E-23 129.4 10.2 81 320-400 5-86 (87)
83 1oo0_B CG8781-PA, drosophila Y 99.8 6.1E-19 2.1E-23 135.7 10.4 91 30-120 17-107 (110)
84 1x4h_A RNA-binding protein 28; 99.8 1.8E-18 6.1E-23 133.4 12.9 88 34-121 10-103 (111)
85 3md1_A Nuclear and cytoplasmic 99.8 8.1E-19 2.8E-23 127.6 10.2 79 322-400 2-81 (83)
86 2do4_A Squamous cell carcinoma 99.8 6.8E-19 2.3E-23 132.9 9.8 84 317-400 13-96 (100)
87 2cpf_A RNA binding motif prote 99.8 9.8E-19 3.4E-23 131.5 10.6 86 36-121 2-90 (98)
88 3p5t_L Cleavage and polyadenyl 99.8 2.7E-19 9.1E-24 132.0 7.3 80 322-401 2-84 (90)
89 2cqd_A RNA-binding region cont 99.8 1.9E-18 6.4E-23 134.3 12.5 90 30-120 8-97 (116)
90 2dnh_A Bruno-like 5, RNA bindi 99.8 3.2E-18 1.1E-22 130.5 13.5 86 36-122 12-100 (105)
91 1x5t_A Splicing factor 3B subu 99.8 6.4E-19 2.2E-23 132.0 9.4 85 37-121 3-88 (96)
92 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.6E-19 2.3E-23 128.7 9.3 80 319-398 5-85 (85)
93 2ywk_A Putative RNA-binding pr 99.8 8.3E-19 2.8E-23 131.1 9.9 82 318-399 13-94 (95)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.3E-19 1.8E-23 146.4 9.7 141 264-404 11-156 (165)
95 2dng_A Eukaryotic translation 99.8 2.4E-18 8.1E-23 130.6 12.4 88 32-121 8-95 (103)
96 3p5t_L Cleavage and polyadenyl 99.8 2.6E-19 9.1E-24 132.0 7.0 81 40-120 2-84 (90)
97 3q2s_C Cleavage and polyadenyl 99.8 4.6E-19 1.6E-23 154.3 9.6 86 320-405 67-155 (229)
98 3s7r_A Heterogeneous nuclear r 99.8 1.7E-18 5.9E-23 127.0 11.2 81 35-116 7-87 (87)
99 2wbr_A GW182, gawky, LD47780P; 99.8 1.9E-18 6.7E-23 121.7 10.7 74 37-116 5-78 (89)
100 3ns6_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 133.6 7.8 83 320-402 5-95 (100)
101 2div_A TRNA selenocysteine ass 99.8 1.1E-18 3.8E-23 131.5 10.1 85 35-119 5-94 (99)
102 3r27_A HnRNP L, heterogeneous 99.8 6E-19 2.1E-23 129.7 8.3 80 316-400 16-97 (100)
103 1p1t_A Cleavage stimulation fa 99.8 6.2E-19 2.1E-23 134.2 8.5 88 33-120 2-89 (104)
104 1s79_A Lupus LA protein; RRM, 99.8 1.2E-18 4.2E-23 131.0 9.9 81 36-118 8-88 (103)
105 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.8E-18 1.3E-22 129.5 12.8 87 34-122 10-96 (103)
106 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-18 5.3E-23 132.5 10.6 87 35-121 9-98 (106)
107 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-18 7.7E-23 131.0 11.5 88 33-122 9-97 (104)
108 1sjq_A Polypyrimidine tract-bi 99.8 1.4E-18 4.8E-23 129.2 9.9 81 37-123 14-96 (105)
109 2x1f_A MRNA 3'-END-processing 99.8 1.1E-18 3.9E-23 130.4 9.6 82 321-402 2-84 (96)
110 1sjq_A Polypyrimidine tract-bi 99.8 6E-19 2.1E-23 131.2 7.9 78 318-400 13-92 (105)
111 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.5E-23 138.7 9.7 87 32-119 16-108 (131)
112 1x4e_A RNA binding motif, sing 99.8 5.5E-19 1.9E-23 129.0 7.3 81 37-117 3-83 (85)
113 2d9p_A Polyadenylate-binding p 99.8 1.4E-18 4.8E-23 131.9 9.8 83 317-400 11-93 (103)
114 2lea_A Serine/arginine-rich sp 99.8 1.9E-19 6.4E-24 143.2 5.0 121 261-400 6-127 (135)
115 2cq3_A RNA-binding protein 9; 99.8 6.4E-18 2.2E-22 128.2 13.3 88 33-122 9-96 (103)
116 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-18 5.8E-23 132.0 10.1 84 318-401 12-98 (105)
117 2fy1_A RNA-binding motif prote 99.8 2.8E-18 9.5E-23 132.7 11.4 84 36-120 4-87 (116)
118 1whw_A Hypothetical protein ri 99.8 1.3E-18 4.5E-23 131.1 9.3 84 318-401 5-89 (99)
119 2dgv_A HnRNP M, heterogeneous 99.8 4.3E-18 1.5E-22 126.4 12.0 83 36-120 5-87 (92)
120 2dnz_A Probable RNA-binding pr 99.8 1.9E-18 6.6E-23 129.1 10.2 82 319-400 3-85 (95)
121 3ns6_A Eukaryotic translation 99.8 8E-19 2.7E-23 132.0 8.1 82 38-119 5-93 (100)
122 2e5h_A Zinc finger CCHC-type a 99.8 1.5E-18 5.2E-23 129.4 9.5 81 318-398 13-94 (94)
123 2cqc_A Arginine/serine-rich sp 99.8 1.9E-18 6.5E-23 129.2 10.1 83 317-399 11-94 (95)
124 2cqp_A RNA-binding protein 12; 99.8 1.2E-18 4E-23 131.1 8.9 84 36-119 12-95 (98)
125 1x4a_A Splicing factor, argini 99.8 7.8E-18 2.7E-22 129.2 13.5 89 30-121 13-101 (109)
126 2cq0_A Eukaryotic translation 99.8 2E-18 6.8E-23 131.0 10.1 84 317-400 11-95 (103)
127 2do0_A HnRNP M, heterogeneous 99.8 7.7E-18 2.6E-22 130.5 13.5 82 318-399 12-93 (114)
128 3n9u_C Cleavage and polyadenyl 99.8 3.1E-18 1.1E-22 139.4 11.7 85 320-404 54-141 (156)
129 2cpz_A CUG triplet repeat RNA- 99.8 1.9E-18 6.6E-23 134.0 9.9 84 317-400 21-105 (115)
130 2dhg_A TRNA selenocysteine ass 99.8 4.4E-18 1.5E-22 129.4 11.7 85 36-121 6-92 (104)
131 2db1_A Heterogeneous nuclear r 99.8 2.4E-18 8.1E-23 133.6 10.4 86 319-405 15-103 (118)
132 2fy1_A RNA-binding motif prote 99.8 1.9E-18 6.4E-23 133.7 9.7 82 319-400 5-86 (116)
133 3r27_A HnRNP L, heterogeneous 99.8 2.4E-18 8.2E-23 126.5 9.7 82 32-119 14-97 (100)
134 2cpy_A RNA-binding protein 12; 99.8 2E-18 6.7E-23 133.4 9.8 89 318-407 12-101 (114)
135 2cpe_A RNA-binding protein EWS 99.8 3.4E-18 1.2E-22 132.2 11.1 87 35-121 11-105 (113)
136 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.8E-19 3.4E-23 131.7 7.8 81 37-119 17-98 (100)
137 1p27_B RNA-binding protein 8A; 99.8 2.4E-18 8.3E-23 131.4 10.0 84 317-400 19-103 (106)
138 4a8x_A RNA-binding protein wit 99.8 2.4E-18 8.1E-23 126.7 9.6 83 37-119 2-85 (88)
139 3ucg_A Polyadenylate-binding p 99.8 2.4E-18 8.2E-23 126.9 9.6 81 38-119 5-85 (89)
140 1x4d_A Matrin 3; structural ge 99.8 1.7E-18 5.8E-23 128.9 8.7 85 31-121 7-94 (102)
141 2la6_A RNA-binding protein FUS 99.8 3.3E-18 1.1E-22 128.7 10.4 82 317-398 9-99 (99)
142 2jrs_A RNA-binding protein 39; 99.8 2.3E-18 7.8E-23 131.3 9.6 84 317-400 22-106 (108)
143 3ulh_A THO complex subunit 4; 99.8 3.8E-18 1.3E-22 130.6 10.9 84 33-117 23-106 (107)
144 2rs2_A Musashi-1, RNA-binding 99.8 2.5E-18 8.7E-23 131.4 9.9 84 37-121 23-106 (109)
145 1x5u_A Splicing factor 3B subu 99.8 2.5E-18 8.4E-23 131.1 9.7 84 317-400 11-95 (105)
146 3ulh_A THO complex subunit 4; 99.8 3.7E-18 1.3E-22 130.6 10.7 82 317-398 25-106 (107)
147 2dgs_A DAZ-associated protein 99.8 3E-18 1E-22 129.0 10.0 82 318-400 7-89 (99)
148 3ex7_B RNA-binding protein 8A; 99.8 3.2E-18 1.1E-22 135.2 10.6 92 30-121 13-104 (126)
149 2cqg_A TDP-43, TAR DNA-binding 99.8 1E-17 3.6E-22 127.1 13.0 88 33-122 9-96 (103)
150 2cq4_A RNA binding motif prote 99.8 3.5E-18 1.2E-22 132.2 10.6 83 36-119 22-104 (114)
151 1p1t_A Cleavage stimulation fa 99.8 1.6E-18 5.4E-23 132.0 8.4 87 320-406 7-94 (104)
152 2cq1_A PTB-like protein L; RRM 99.8 9.1E-18 3.1E-22 125.3 12.3 85 32-122 8-94 (101)
153 2cq3_A RNA-binding protein 9; 99.8 4.4E-18 1.5E-22 129.2 10.8 83 317-400 11-93 (103)
154 1x5t_A Splicing factor 3B subu 99.8 1.6E-18 5.4E-23 129.8 8.2 82 319-400 3-86 (96)
155 1x4b_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 132.4 10.8 88 34-122 22-109 (116)
156 2dgo_A Cytotoxic granule-assoc 99.8 3.5E-18 1.2E-22 132.5 10.4 84 317-400 11-95 (115)
157 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.2E-18 1.8E-22 136.9 11.8 87 30-116 54-140 (140)
158 1wez_A HnRNP H', FTP-3, hetero 99.8 3.7E-18 1.3E-22 128.5 10.1 84 34-120 10-93 (102)
159 2do0_A HnRNP M, heterogeneous 99.8 1.2E-17 4.1E-22 129.4 13.3 85 34-119 10-94 (114)
160 1wex_A Hypothetical protein (r 99.8 7.1E-18 2.4E-22 126.8 11.4 85 32-122 8-94 (104)
161 1wg5_A Heterogeneous nuclear r 99.8 7.9E-18 2.7E-22 127.6 11.5 83 36-120 12-95 (104)
162 2ek1_A RNA-binding protein 12; 99.8 1.4E-18 4.7E-23 129.9 7.1 80 38-117 14-93 (95)
163 2cph_A RNA binding motif prote 99.7 3E-18 1E-22 131.2 9.0 84 317-400 11-97 (107)
164 2cpf_A RNA binding motif prote 99.7 3.3E-18 1.1E-22 128.6 9.1 81 320-400 4-88 (98)
165 2hvz_A Splicing factor, argini 99.7 2E-18 6.8E-23 130.5 7.8 92 40-136 1-100 (101)
166 2dhg_A TRNA selenocysteine ass 99.7 3E-18 1E-22 130.3 8.9 83 318-400 6-90 (104)
167 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.2E-18 7.5E-23 130.6 8.0 83 318-400 9-92 (102)
168 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-18 6E-23 123.8 7.1 76 40-116 1-76 (77)
169 2dgx_A KIAA0430 protein; RRM d 99.7 3.3E-18 1.1E-22 127.8 8.8 80 319-400 7-90 (96)
170 2dgw_A Probable RNA-binding pr 99.7 8.2E-18 2.8E-22 124.5 10.9 82 35-119 6-87 (91)
171 2dnm_A SRP46 splicing factor; 99.7 2.3E-18 8E-23 130.7 8.1 84 317-400 9-93 (103)
172 2err_A Ataxin-2-binding protei 99.7 2.9E-18 9.9E-23 131.2 8.7 84 316-400 24-107 (109)
173 2dgv_A HnRNP M, heterogeneous 99.7 3.9E-18 1.3E-22 126.6 9.2 82 318-400 5-86 (92)
174 2div_A TRNA selenocysteine ass 99.7 4.7E-18 1.6E-22 128.0 9.7 83 318-400 6-94 (99)
175 1oo0_B CG8781-PA, drosophila Y 99.7 4.1E-18 1.4E-22 131.0 9.6 84 317-400 22-106 (110)
176 2kt5_A RNA and export factor-b 99.7 1.9E-17 6.5E-22 130.2 13.4 85 35-120 31-115 (124)
177 1x5s_A Cold-inducible RNA-bind 99.7 2.8E-18 9.7E-23 130.0 8.2 83 318-400 9-92 (102)
178 2ad9_A Polypyrimidine tract-bi 99.7 1E-17 3.5E-22 128.0 11.2 85 32-122 24-110 (119)
179 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.5E-18 1.9E-22 128.6 9.7 83 317-400 11-93 (103)
180 2mss_A Protein (musashi1); RNA 99.7 2.2E-18 7.5E-23 122.5 7.0 75 41-116 1-75 (75)
181 2err_A Ataxin-2-binding protei 99.7 5E-18 1.7E-22 129.9 9.5 82 36-119 26-107 (109)
182 2cq1_A PTB-like protein L; RRM 99.7 6.3E-18 2.1E-22 126.2 9.6 79 317-400 11-91 (101)
183 2khc_A Testis-specific RNP-typ 99.7 3.4E-18 1.2E-22 133.3 8.6 82 317-398 36-118 (118)
184 2kxn_B Transformer-2 protein h 99.7 3.8E-18 1.3E-22 134.4 8.7 84 317-400 42-126 (129)
185 1x4d_A Matrin 3; structural ge 99.7 1.5E-18 5.1E-23 129.3 6.0 77 319-400 13-92 (102)
186 2cpi_A CCR4-NOT transcription 99.7 9E-18 3.1E-22 129.0 10.5 89 32-120 8-102 (111)
187 2dis_A Unnamed protein product 99.7 6.8E-18 2.3E-22 129.6 9.8 87 35-121 4-94 (109)
188 2lmi_A GRSF-1, G-rich sequence 99.7 2.8E-18 9.5E-23 130.9 7.5 87 318-405 8-97 (107)
189 2cpy_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 131.5 8.6 83 35-119 11-94 (114)
190 2ad9_A Polypyrimidine tract-bi 99.7 5.2E-18 1.8E-22 129.6 8.9 78 318-400 28-107 (119)
191 3ucg_A Polyadenylate-binding p 99.7 7.6E-18 2.6E-22 124.2 9.5 79 321-400 6-85 (89)
192 2hgl_A HNRPF protein, heteroge 99.7 5.4E-18 1.9E-22 133.8 8.9 84 319-403 42-128 (136)
193 1x4h_A RNA-binding protein 28; 99.7 7.3E-18 2.5E-22 130.0 9.3 84 317-400 11-101 (111)
194 1x4e_A RNA binding motif, sing 99.7 2.9E-18 9.8E-23 125.2 6.6 80 319-398 3-83 (85)
195 3s7r_A Heterogeneous nuclear r 99.7 1.4E-17 4.8E-22 122.1 10.2 79 318-397 8-87 (87)
196 2cpe_A RNA-binding protein EWS 99.7 7.5E-18 2.6E-22 130.2 9.2 84 317-400 11-103 (113)
197 2dgw_A Probable RNA-binding pr 99.7 1.1E-17 3.8E-22 123.7 9.7 81 318-400 7-87 (91)
198 2lea_A Serine/arginine-rich sp 99.7 4E-18 1.4E-22 135.6 7.8 90 32-121 40-129 (135)
199 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.2E-17 4.2E-22 138.2 10.9 93 29-121 62-154 (165)
200 2jwn_A Embryonic polyadenylate 99.7 3E-17 1E-21 129.2 12.7 82 37-119 34-115 (124)
201 2db1_A Heterogeneous nuclear r 99.7 8.7E-18 3E-22 130.4 9.4 80 36-117 14-96 (118)
202 2cq4_A RNA binding motif prote 99.7 8.5E-18 2.9E-22 130.1 9.3 82 320-402 24-106 (114)
203 1wi8_A EIF-4B, eukaryotic tran 99.7 8.4E-18 2.9E-22 127.8 9.1 82 317-400 11-94 (104)
204 4a8x_A RNA-binding protein wit 99.7 6.5E-18 2.2E-22 124.3 8.1 81 320-400 3-85 (88)
205 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-17 5.3E-22 124.1 10.2 80 38-120 8-91 (96)
206 2dgp_A Bruno-like 4, RNA bindi 99.7 5.2E-18 1.8E-22 129.5 7.7 84 317-400 9-96 (106)
207 2dng_A Eukaryotic translation 99.7 1.3E-17 4.4E-22 126.5 9.9 82 317-400 11-93 (103)
208 2mss_A Protein (musashi1); RNA 99.7 4.5E-18 1.5E-22 120.9 6.8 74 323-397 1-75 (75)
209 2nlw_A Eukaryotic translation 99.7 1.6E-17 5.5E-22 126.2 10.3 81 37-119 13-100 (105)
210 2cpi_A CCR4-NOT transcription 99.7 7.5E-18 2.6E-22 129.4 8.5 83 318-400 12-101 (111)
211 1wex_A Hypothetical protein (r 99.7 7.1E-18 2.4E-22 126.8 8.1 78 318-400 12-91 (104)
212 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.5E-22 129.7 9.1 87 319-406 21-111 (123)
213 2krb_A Eukaryotic translation 99.7 6.6E-18 2.3E-22 121.8 7.5 73 39-113 1-80 (81)
214 1x5o_A RNA binding motif, sing 99.7 5.6E-17 1.9E-21 125.5 13.3 83 34-117 20-110 (114)
215 2kt5_A RNA and export factor-b 99.7 1.2E-17 4.2E-22 131.3 9.6 83 318-400 32-114 (124)
216 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.7E-17 9.2E-22 135.0 12.0 86 35-120 35-120 (156)
217 2dnn_A RNA-binding protein 12; 99.7 1.1E-17 3.9E-22 126.7 9.0 81 320-402 15-95 (109)
218 2a3j_A U1 small nuclear ribonu 99.7 8.9E-18 3E-22 131.0 8.5 84 318-403 26-113 (127)
219 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.6E-18 1.2E-22 128.6 6.1 81 318-400 16-98 (100)
220 1x5o_A RNA binding motif, sing 99.7 1.8E-17 6.1E-22 128.3 10.2 83 318-400 22-112 (114)
221 2ek1_A RNA-binding protein 12; 99.7 6.2E-18 2.1E-22 126.3 7.3 80 320-399 14-94 (95)
222 2krb_A Eukaryotic translation 99.7 4.7E-18 1.6E-22 122.6 6.4 73 322-395 2-81 (81)
223 2a3j_A U1 small nuclear ribonu 99.7 1.8E-17 6.2E-22 129.2 10.2 81 37-120 27-111 (127)
224 2dnq_A RNA-binding protein 4B; 99.7 5.1E-17 1.7E-21 119.8 12.0 79 36-122 5-83 (90)
225 2cqp_A RNA-binding protein 12; 99.7 6.3E-18 2.2E-22 127.0 7.2 82 318-399 12-94 (98)
226 1why_A Hypothetical protein ri 99.7 4.3E-17 1.5E-21 122.1 11.6 82 33-120 11-94 (97)
227 2hgl_A HNRPF protein, heteroge 99.7 1.1E-17 3.8E-22 132.0 8.7 82 34-117 39-123 (136)
228 2fc9_A NCL protein; structure 99.7 3.4E-17 1.2E-21 123.7 11.0 83 35-121 11-93 (101)
229 3ex7_B RNA-binding protein 8A; 99.7 1.4E-17 4.8E-22 131.4 9.2 85 316-400 17-102 (126)
230 2cpj_A Non-POU domain-containi 99.7 4E-17 1.4E-21 122.8 11.2 82 34-121 10-91 (99)
231 2ki2_A SS-DNA binding protein 99.7 2.8E-18 9.6E-23 126.7 4.8 80 40-120 2-81 (90)
232 2cqd_A RNA-binding region cont 99.7 1.7E-17 6E-22 128.8 9.4 84 316-400 12-96 (116)
233 1x4a_A Splicing factor, argini 99.7 2.5E-17 8.7E-22 126.3 10.2 82 317-400 18-99 (109)
234 2dnn_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 125.4 9.3 79 36-117 13-91 (109)
235 2nlw_A Eukaryotic translation 99.7 7.8E-18 2.7E-22 127.9 7.1 81 319-400 13-100 (105)
236 1wez_A HnRNP H', FTP-3, hetero 99.7 1.3E-17 4.6E-22 125.4 8.3 80 318-399 12-91 (102)
237 2la4_A Nuclear and cytoplasmic 99.7 6.9E-18 2.4E-22 127.6 6.7 75 38-118 26-100 (101)
238 1x4c_A Splicing factor, argini 99.7 6.8E-17 2.3E-21 123.5 12.3 79 35-120 11-94 (108)
239 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-17 4.7E-22 134.0 8.6 84 317-400 38-122 (139)
240 2ytc_A PRE-mRNA-splicing facto 99.7 4.6E-17 1.6E-21 118.7 10.7 78 33-116 6-84 (85)
241 1wel_A RNA-binding protein 12; 99.7 1.8E-17 6.2E-22 130.2 9.0 82 36-118 22-103 (124)
242 2dh8_A DAZ-associated protein 99.7 9.3E-18 3.2E-22 127.8 7.1 83 317-400 12-95 (105)
243 2la4_A Nuclear and cytoplasmic 99.7 1.9E-17 6.5E-22 125.1 8.8 76 319-399 25-100 (101)
244 1x4f_A Matrin 3; structural ge 99.7 8E-18 2.8E-22 127.0 6.6 78 318-400 22-102 (112)
245 2m2b_A RNA-binding protein 10; 99.7 4.3E-18 1.5E-22 135.1 5.3 83 317-400 19-108 (131)
246 2fc8_A NCL protein; structure 99.7 5.8E-17 2E-21 122.7 11.3 86 33-121 9-94 (102)
247 1wg5_A Heterogeneous nuclear r 99.7 1.9E-17 6.4E-22 125.6 8.5 82 318-400 12-94 (104)
248 2fc9_A NCL protein; structure 99.7 2.3E-17 7.9E-22 124.6 9.0 81 317-400 11-91 (101)
249 2ytc_A PRE-mRNA-splicing facto 99.7 2.6E-17 8.9E-22 120.1 8.9 77 317-398 8-85 (85)
250 2e5j_A Methenyltetrahydrofolat 99.7 5.7E-17 2E-21 121.3 10.9 81 34-119 14-94 (97)
251 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.9E-18 3.4E-22 119.8 6.4 75 322-397 1-76 (77)
252 2dnq_A RNA-binding protein 4B; 99.7 3.6E-17 1.2E-21 120.6 9.6 76 318-400 5-80 (90)
253 3lqv_A PRE-mRNA branch site pr 99.7 4.6E-17 1.6E-21 126.2 10.4 81 319-401 6-86 (115)
254 2ki2_A SS-DNA binding protein 99.7 4.5E-18 1.5E-22 125.6 4.4 79 322-401 2-81 (90)
255 2jwn_A Embryonic polyadenylate 99.7 1.9E-17 6.4E-22 130.3 8.1 78 321-399 36-114 (124)
256 1x4f_A Matrin 3; structural ge 99.7 5.1E-17 1.8E-21 122.6 10.1 81 35-121 21-104 (112)
257 2jvo_A Nucleolar protein 3; nu 99.7 2.8E-17 9.7E-22 125.2 8.8 79 316-401 26-104 (108)
258 2rs2_A Musashi-1, RNA-binding 99.7 2.5E-17 8.6E-22 125.9 8.5 82 318-400 22-104 (109)
259 1iqt_A AUF1, heterogeneous nuc 99.7 8.8E-18 3E-22 119.4 5.6 75 41-116 1-75 (75)
260 1wel_A RNA-binding protein 12; 99.7 2.4E-17 8.3E-22 129.4 8.4 86 318-404 22-108 (124)
261 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-17 5.9E-22 125.9 7.3 78 320-400 27-105 (111)
262 1why_A Hypothetical protein ri 99.7 3.3E-17 1.1E-21 122.7 8.7 78 318-400 14-93 (97)
263 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-17 5.7E-22 126.6 7.2 80 37-118 9-91 (107)
264 2cpj_A Non-POU domain-containi 99.7 2.9E-17 1E-21 123.5 8.3 78 318-400 12-89 (99)
265 2jvr_A Nucleolar protein 3; RN 99.7 2.9E-17 1E-21 124.6 8.2 79 38-120 27-106 (111)
266 2dgt_A RNA-binding protein 30; 99.7 1.1E-16 3.6E-21 118.6 11.0 81 33-121 4-84 (92)
267 2hgm_A HNRPF protein, heteroge 99.7 4.5E-17 1.5E-21 126.2 9.3 81 35-118 38-120 (126)
268 3q2s_C Cleavage and polyadenyl 99.7 3.8E-17 1.3E-21 142.2 9.8 81 38-118 67-149 (229)
269 2jvo_A Nucleolar protein 3; nu 99.7 5.9E-17 2E-21 123.4 9.7 78 35-120 27-104 (108)
270 1nu4_A U1A RNA binding domain; 99.7 1.4E-17 4.8E-22 124.9 5.9 83 318-402 5-91 (97)
271 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.1E-17 2.4E-21 132.5 10.6 82 319-400 37-119 (156)
272 1fj7_A Nucleolin RBD1, protein 99.7 8E-18 2.7E-22 127.2 4.5 82 37-120 15-96 (101)
273 2xnq_A Nuclear polyadenylated 99.7 6.8E-17 2.3E-21 120.6 9.6 77 317-400 18-95 (97)
274 2xnq_A Nuclear polyadenylated 99.7 1E-16 3.4E-21 119.6 10.5 76 36-119 19-95 (97)
275 2dgu_A Heterogeneous nuclear r 99.7 1.2E-16 4E-21 121.1 11.0 81 34-122 6-86 (103)
276 1x4g_A Nucleolysin TIAR; struc 99.7 4.8E-17 1.6E-21 124.6 8.8 78 318-400 22-99 (109)
277 2cqg_A TDP-43, TAR DNA-binding 99.7 9.3E-17 3.2E-21 121.8 10.3 81 318-400 12-93 (103)
278 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-16 3.7E-21 122.7 10.6 81 36-122 22-102 (109)
279 2dgt_A RNA-binding protein 30; 99.7 6.7E-17 2.3E-21 119.7 9.1 76 318-400 7-82 (92)
280 1nu4_A U1A RNA binding domain; 99.7 3.1E-17 1.1E-21 123.0 7.3 82 36-120 5-90 (97)
281 1x4b_A Heterogeneous nuclear r 99.7 4.9E-17 1.7E-21 126.2 8.6 80 320-400 26-106 (116)
282 1whx_A Hypothetical protein ri 99.7 4.2E-17 1.4E-21 125.0 8.1 79 35-119 6-84 (111)
283 2dis_A Unnamed protein product 99.7 3.4E-17 1.2E-21 125.7 7.6 82 319-400 6-92 (109)
284 2cpx_A Hypothetical protein FL 99.7 3.3E-17 1.1E-21 127.1 7.6 86 36-121 22-107 (115)
285 1x4c_A Splicing factor, argini 99.7 7.6E-17 2.6E-21 123.2 9.4 76 319-400 13-93 (108)
286 2xs2_A Deleted in azoospermia- 99.7 3.7E-17 1.3E-21 123.7 7.5 81 36-119 6-86 (102)
287 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.6E-17 2.3E-21 130.3 9.4 81 317-397 59-140 (140)
288 2diu_A KIAA0430 protein; struc 99.7 2.1E-16 7.1E-21 112.4 10.7 75 38-122 7-87 (96)
289 2diu_A KIAA0430 protein; struc 99.7 7.3E-17 2.5E-21 114.7 8.4 72 320-400 7-84 (96)
290 2f3j_A RNA and export factor b 99.7 2.3E-16 7.7E-21 131.4 12.8 85 34-119 83-167 (177)
291 2cpd_A Apobec-1 stimulating pr 99.7 4.2E-16 1.4E-20 117.1 12.8 82 32-121 8-91 (99)
292 2dnp_A RNA-binding protein 14; 99.7 1.5E-16 5.3E-21 117.2 10.2 79 35-121 5-83 (90)
293 3zzy_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 123.9 9.5 74 323-400 30-106 (130)
294 1whx_A Hypothetical protein ri 99.7 4.7E-17 1.6E-21 124.7 7.5 75 320-399 9-83 (111)
295 2dnp_A RNA-binding protein 14; 99.7 7.7E-17 2.6E-21 118.8 8.3 76 318-400 6-81 (90)
296 2kvi_A Nuclear polyadenylated 99.7 4.5E-17 1.6E-21 121.6 7.0 77 318-401 7-84 (96)
297 2dgu_A Heterogeneous nuclear r 99.7 1.6E-17 5.4E-22 125.9 4.5 76 319-401 9-84 (103)
298 2dha_A FLJ20171 protein; RRM d 99.7 5.7E-17 2E-21 125.5 7.5 78 37-116 21-102 (123)
299 2e5j_A Methenyltetrahydrofolat 99.7 7.4E-17 2.5E-21 120.7 8.0 79 318-400 16-94 (97)
300 2hgn_A Heterogeneous nuclear r 99.7 2E-17 7E-22 130.9 5.1 84 34-120 41-124 (139)
301 2hvz_A Splicing factor, argini 99.7 4E-17 1.4E-21 123.3 6.4 75 322-400 1-75 (101)
302 2kvi_A Nuclear polyadenylated 99.7 1.5E-16 5.2E-21 118.7 9.1 79 35-121 6-85 (96)
303 2lcw_A RNA-binding protein FUS 99.5 3.4E-18 1.2E-22 132.7 0.0 87 36-122 4-98 (116)
304 1wf1_A RNA-binding protein RAL 99.7 3.1E-16 1.1E-20 120.3 11.0 76 36-119 24-100 (110)
305 1iqt_A AUF1, heterogeneous nuc 99.7 2.5E-17 8.5E-22 117.0 4.2 74 323-397 1-75 (75)
306 3pgw_S U1-70K; protein-RNA com 99.7 1.3E-17 4.5E-22 158.9 3.7 82 319-400 100-182 (437)
307 1sjr_A Polypyrimidine tract-bi 99.7 1E-16 3.6E-21 128.6 8.2 77 321-400 46-124 (164)
308 2hgm_A HNRPF protein, heteroge 99.7 8.6E-17 2.9E-21 124.7 7.3 81 319-401 40-122 (126)
309 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-16 3.6E-21 119.8 7.6 82 34-120 11-92 (96)
310 2cq2_A Hypothetical protein LO 99.7 6.5E-17 2.2E-21 122.0 6.4 77 318-399 22-105 (114)
311 1wg1_A KIAA1579 protein, homol 99.7 2.3E-16 8E-21 115.6 9.2 78 36-120 2-79 (88)
312 2fc8_A NCL protein; structure 99.7 2.7E-16 9.3E-21 119.0 9.6 81 317-400 11-92 (102)
313 1fjc_A Nucleolin RBD2, protein 99.7 6E-17 2.1E-21 121.1 5.9 78 319-400 14-91 (96)
314 2f3j_A RNA and export factor b 99.7 1.6E-16 5.5E-21 132.3 9.0 83 318-400 85-167 (177)
315 2j8a_A Histone-lysine N-methyl 99.7 1.8E-16 6.2E-21 119.4 8.2 79 39-117 2-94 (136)
316 2cpx_A Hypothetical protein FL 99.7 1.2E-16 4.1E-21 123.9 7.6 80 318-400 22-105 (115)
317 2cqh_A IGF-II mRNA-binding pro 99.7 1.9E-16 6.4E-21 117.6 8.2 78 37-121 6-85 (93)
318 1x5p_A Negative elongation fac 99.7 1.1E-15 3.6E-20 114.4 12.3 79 35-121 11-89 (97)
319 2e44_A Insulin-like growth fac 99.7 3.5E-16 1.2E-20 116.9 9.6 79 37-119 13-92 (96)
320 2e5g_A U6 snRNA-specific termi 99.7 7.4E-16 2.5E-20 114.5 11.2 78 36-119 5-82 (94)
321 2xs2_A Deleted in azoospermia- 99.7 6.3E-17 2.1E-21 122.5 5.5 80 320-401 8-87 (102)
322 2cqh_A IGF-II mRNA-binding pro 99.7 1.2E-16 4.3E-21 118.6 6.9 76 319-400 6-83 (93)
323 2hgn_A Heterogeneous nuclear r 99.7 3E-17 1E-21 129.9 3.6 80 319-400 44-123 (139)
324 2j8a_A Histone-lysine N-methyl 99.7 1.8E-16 6.2E-21 119.4 7.6 80 322-401 3-97 (136)
325 2lcw_A RNA-binding protein FUS 99.5 7.9E-18 2.7E-22 130.7 0.0 84 319-402 5-97 (116)
326 2e5i_A Heterogeneous nuclear r 99.7 4E-16 1.4E-20 120.2 9.5 73 323-400 27-102 (124)
327 1wg1_A KIAA1579 protein, homol 99.7 2.6E-16 9E-21 115.3 7.9 74 320-399 4-77 (88)
328 2cpd_A Apobec-1 stimulating pr 99.7 5.3E-16 1.8E-20 116.6 9.7 76 318-400 12-89 (99)
329 1fj7_A Nucleolin RBD1, protein 99.6 2.5E-17 8.5E-22 124.5 2.2 80 319-400 15-95 (101)
330 2pe8_A Splicing factor 45; RRM 99.6 8.4E-16 2.9E-20 115.6 10.6 83 319-401 6-95 (105)
331 1wf1_A RNA-binding protein RAL 99.6 2.6E-16 8.9E-21 120.7 7.9 75 319-400 25-100 (110)
332 1x5p_A Negative elongation fac 99.6 5.3E-16 1.8E-20 116.0 9.2 76 318-400 12-87 (97)
333 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-15 3.7E-20 122.8 11.3 78 39-120 46-125 (164)
334 2dnl_A Cytoplasmic polyadenyla 99.6 4.6E-16 1.6E-20 120.0 8.7 78 36-116 5-85 (114)
335 3d2w_A TAR DNA-binding protein 99.6 5.4E-16 1.9E-20 113.4 8.5 76 319-402 9-86 (89)
336 3pgw_S U1-70K; protein-RNA com 99.6 1.4E-16 4.9E-21 151.7 6.7 152 55-206 8-182 (437)
337 3zzy_A Polypyrimidine tract-bi 99.6 2E-15 6.8E-20 116.6 11.6 77 39-120 28-107 (130)
338 2cq2_A Hypothetical protein LO 99.6 6.3E-16 2.1E-20 116.6 8.2 77 36-118 22-105 (114)
339 3egn_A RNA-binding protein 40; 99.6 2.5E-16 8.6E-21 127.1 6.5 83 318-400 42-130 (143)
340 2pe8_A Splicing factor 45; RRM 99.6 1.7E-15 5.7E-20 114.0 10.4 85 34-118 3-93 (105)
341 3beg_B Splicing factor, argini 99.6 7.2E-16 2.5E-20 119.0 8.0 70 36-112 13-82 (115)
342 2e5i_A Heterogeneous nuclear r 99.6 1.2E-14 4.1E-19 112.0 14.7 75 40-120 26-103 (124)
343 2e5g_A U6 snRNA-specific termi 99.6 1.3E-15 4.3E-20 113.2 8.9 76 320-400 7-82 (94)
344 2e44_A Insulin-like growth fac 99.6 6E-16 2E-20 115.7 7.0 79 319-400 13-92 (96)
345 3egn_A RNA-binding protein 40; 99.6 2.1E-16 7.3E-21 127.5 4.7 84 36-119 42-130 (143)
346 3beg_B Splicing factor, argini 99.6 7.2E-16 2.5E-20 119.0 7.5 74 320-399 15-93 (115)
347 2hzc_A Splicing factor U2AF 65 99.6 1.2E-15 4.1E-20 111.7 8.1 73 36-115 3-86 (87)
348 3d2w_A TAR DNA-binding protein 99.6 1.1E-15 3.7E-20 111.8 7.4 78 35-119 7-84 (89)
349 2bz2_A Negative elongation fac 99.6 2.4E-15 8.4E-20 116.7 8.6 76 318-400 36-111 (121)
350 1wf0_A TDP-43, TAR DNA-binding 99.6 1.1E-15 3.6E-20 112.2 5.9 79 36-121 2-80 (88)
351 2bz2_A Negative elongation fac 99.6 4.1E-15 1.4E-19 115.4 9.3 79 35-121 35-113 (121)
352 2hzc_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 109.2 8.2 71 320-396 5-86 (87)
353 2voo_A Lupus LA protein; RNA-b 99.6 4.4E-15 1.5E-19 125.6 9.9 81 321-402 109-189 (193)
354 3v4m_A Splicing factor U2AF 65 99.6 6.4E-15 2.2E-19 110.9 8.3 83 319-401 3-98 (105)
355 3u1l_A PRE-mRNA-splicing facto 99.6 3.8E-15 1.3E-19 128.2 7.8 79 319-402 132-231 (240)
356 2dnl_A Cytoplasmic polyadenyla 99.6 4.6E-15 1.6E-19 114.4 7.3 76 320-398 7-86 (114)
357 2voo_A Lupus LA protein; RNA-b 99.6 8.5E-15 2.9E-19 123.8 9.6 80 37-118 107-186 (193)
358 1wf0_A TDP-43, TAR DNA-binding 99.6 2.3E-15 7.9E-20 110.3 5.2 75 320-400 4-78 (88)
359 1jmt_A Splicing factor U2AF 35 99.5 2.3E-15 7.9E-20 113.2 3.5 72 326-397 20-103 (104)
360 2dit_A HIV TAT specific factor 99.5 8.6E-14 2.9E-18 106.8 11.3 86 33-122 9-105 (112)
361 2dit_A HIV TAT specific factor 99.5 4.4E-14 1.5E-18 108.4 9.5 80 318-400 12-102 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.5 2.2E-14 7.4E-19 123.6 8.3 80 35-120 130-230 (240)
363 3ue2_A Poly(U)-binding-splicin 99.5 3.8E-14 1.3E-18 108.6 8.5 81 320-400 19-109 (118)
364 3v4m_A Splicing factor U2AF 65 99.5 5.2E-14 1.8E-18 105.9 8.3 81 37-117 3-95 (105)
365 3ue2_A Poly(U)-binding-splicin 99.5 1.3E-13 4.5E-18 105.6 8.8 80 38-117 19-107 (118)
366 1jmt_A Splicing factor U2AF 35 99.4 2.9E-14 9.9E-19 107.2 3.5 72 44-116 20-103 (104)
367 3s6e_A RNA-binding protein 39; 99.4 5.4E-13 1.9E-17 101.4 10.2 81 319-402 5-95 (114)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 7.7E-13 2.6E-17 97.9 9.4 64 331-400 27-90 (100)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.9E-12 1E-16 94.8 12.3 76 39-121 10-92 (100)
370 3tht_A Alkylated DNA repair pr 99.4 1E-12 3.6E-17 119.5 8.1 77 317-398 14-97 (345)
371 3tht_A Alkylated DNA repair pr 99.3 2.6E-12 8.9E-17 116.9 8.3 75 36-116 15-96 (345)
372 3s6e_A RNA-binding protein 39; 99.3 6.7E-12 2.3E-16 95.3 8.7 77 37-117 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 5.5E-12 1.9E-16 88.9 6.9 73 319-399 5-85 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 9.9E-11 3.4E-15 88.7 9.4 82 317-403 14-99 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 5.5E-11 1.9E-15 84.1 5.0 74 317-398 11-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.1 4.6E-10 1.6E-14 85.0 9.4 75 35-115 14-92 (121)
377 2dnr_A Synaptojanin-1; RRM dom 99.0 9.7E-10 3.3E-14 77.5 7.8 73 37-118 5-85 (91)
378 3dxb_A Thioredoxin N-terminall 99.0 8E-10 2.7E-14 96.0 7.4 69 333-401 141-214 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 2.5E-09 8.7E-14 75.6 4.9 71 37-116 13-92 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.8 4.6E-08 1.6E-12 70.4 10.0 77 320-401 20-101 (117)
381 3dxb_A Thioredoxin N-terminall 98.8 1.4E-08 4.6E-13 88.2 8.4 79 39-117 124-211 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.6 8.5E-07 2.9E-11 63.5 11.2 88 38-140 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.3 2.4E-06 8.2E-11 61.6 8.0 71 38-114 20-95 (117)
384 1wey_A Calcipressin 1; structu 98.0 1.7E-05 5.8E-10 57.2 6.3 73 321-398 5-82 (104)
385 1wey_A Calcipressin 1; structu 97.9 4.3E-05 1.5E-09 55.1 7.0 73 39-117 5-82 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.8 0.00013 4.4E-09 52.4 8.7 68 320-395 7-79 (104)
387 1uw4_A UPF3X; nonsense mediate 97.7 0.00015 5.2E-09 51.5 8.2 67 40-106 2-70 (91)
388 1whv_A Poly(A)-specific ribonu 97.7 0.00014 4.9E-09 51.3 7.4 56 321-383 15-70 (100)
389 1uw4_A UPF3X; nonsense mediate 97.7 0.00032 1.1E-08 49.8 8.9 68 322-389 2-72 (91)
390 3ctr_A Poly(A)-specific ribonu 97.3 0.00026 8.8E-09 50.3 4.8 54 323-383 7-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.0009 3.1E-08 49.8 7.7 71 37-115 22-93 (119)
392 1wwh_A Nucleoporin 35, nucleop 97.2 0.0013 4.3E-08 49.0 7.6 71 320-397 23-94 (119)
393 1whv_A Poly(A)-specific ribonu 97.2 0.0018 6.2E-08 45.8 7.6 56 38-101 14-69 (100)
394 3ctr_A Poly(A)-specific ribonu 97.1 0.0012 4.1E-08 46.9 5.7 53 41-102 8-60 (101)
395 3pq1_A Poly(A) RNA polymerase; 96.9 0.00042 1.5E-08 65.3 2.9 56 39-100 53-108 (464)
396 2l08_A Regulator of nonsense t 96.6 0.0022 7.4E-08 45.8 4.3 69 38-106 8-78 (97)
397 2l08_A Regulator of nonsense t 96.6 0.0041 1.4E-07 44.3 5.7 68 322-389 10-80 (97)
398 3p3d_A Nucleoporin 53; structu 96.2 0.006 2.1E-07 46.0 4.9 79 322-402 8-101 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.8 0.0049 1.7E-07 58.2 3.6 54 322-380 54-107 (464)
400 3p3d_A Nucleoporin 53; structu 95.7 0.01 3.6E-07 44.7 4.1 76 39-116 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 89.5 0.9 3.1E-05 43.8 7.9 54 323-383 441-494 (507)
402 3d45_A Poly(A)-specific ribonu 88.9 1.2 4E-05 43.1 8.2 62 31-102 433-494 (507)
403 3iot_A Maltose-binding protein 82.6 0.31 1.1E-05 46.6 0.6 10 140-149 128-137 (449)
404 2g0c_A ATP-dependent RNA helic 77.9 4.3 0.00015 27.3 5.1 60 331-398 11-75 (76)
405 4eyt_A Telomerase associated p 60.2 38 0.0013 23.1 8.4 56 128-190 13-68 (129)
406 4e8u_A Putative uncharacterize 48.3 68 0.0023 25.4 7.1 51 323-375 14-75 (172)
407 4eyt_A Telomerase associated p 47.9 63 0.0022 22.0 7.8 56 320-382 11-66 (129)
408 4e8u_A Putative uncharacterize 47.1 44 0.0015 26.5 5.9 56 41-99 14-81 (172)
409 2g0c_A ATP-dependent RNA helic 44.5 49 0.0017 21.8 5.3 58 50-116 12-74 (76)
410 3j21_T 50S ribosomal protein L 39.5 91 0.0031 21.4 6.2 55 44-101 27-83 (86)
411 1xn9_A 30S ribosomal protein S 29.8 1.3E+02 0.0043 21.5 5.5 49 49-98 28-81 (101)
412 1ywx_A 30S ribosomal protein S 29.7 1.3E+02 0.0045 21.4 5.6 47 49-96 28-79 (102)
413 2v94_A RPS24, 30S ribosomal pr 29.0 1.2E+02 0.0041 21.9 5.3 47 49-96 37-88 (107)
414 4a8j_B Elongator complex prote 28.3 1.6E+02 0.0055 25.1 6.7 49 39-87 166-222 (270)
415 2i9x_A Putative septation prot 25.0 96 0.0033 21.4 4.0 26 65-90 5-30 (87)
416 1vq8_S 50S ribosomal protein L 24.7 1.4E+02 0.0048 20.4 4.8 54 44-100 26-81 (85)
417 2e5p_A Protein PHF1, PHD finge 24.3 24 0.00083 22.7 0.8 19 346-371 28-46 (68)
418 4bby_A Alkyldihydroxyacetoneph 22.7 60 0.002 32.4 3.8 54 330-383 352-409 (658)
419 2ia9_A Putative septation prot 21.6 1.2E+02 0.0041 21.6 4.0 26 65-90 5-30 (100)
420 1igq_A Transcriptional repress 20.8 86 0.0029 19.9 2.8 22 350-371 21-42 (62)
421 2i9z_A Putative septation prot 20.7 1.3E+02 0.0044 21.6 4.1 26 65-90 5-30 (105)
422 2m0o_A PHD finger protein 1; t 20.6 31 0.0011 22.8 0.8 19 346-371 45-63 (79)
423 3u5c_Y RP50, 40S ribosomal pro 20.5 2.8E+02 0.0095 20.9 6.2 47 49-96 33-84 (135)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.2e-45 Score=337.91 Aligned_cols=253 Identities=21% Similarity=0.291 Sum_probs=225.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.++++|||+|||+++++++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.+++..+.|+.++|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3579999999999999999999999999 999988 346689999999999999999999999999999999986
Q ss_pred ccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCC
Q 012257 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (467)
Q Consensus 117 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g 195 (467)
. ...+|||+|||.++++++|+++|+.||.|..+.+..+ .+|.++|+|||+|.+.++|..|++.++|..+.|
T Consensus 93 ~--------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 P--------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp C--------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred C--------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4 3368999999999999999999999999999999988 689999999999999999999999999999999
Q ss_pred eeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHH
Q 012257 196 KQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275 (467)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 275 (467)
+.|.+.++......
T Consensus 165 ~~i~v~~a~~~~~~------------------------------------------------------------------ 178 (284)
T 3smz_A 165 RTLYVHWTDAGQLT------------------------------------------------------------------ 178 (284)
T ss_dssp EECEEEECCGGGCC------------------------------------------------------------------
T ss_pred cEEEEEECCCCCCC------------------------------------------------------------------
Confidence 99999765332100
Q ss_pred HHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCC-CHHHHHHhhccCCceeEEEEe
Q 012257 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI-SDDKLKELFSEFGTITSCKVM 354 (467)
Q Consensus 276 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-~~~~l~~~F~~~G~v~~v~i~ 354 (467)
......++|||+|||..+ ++++|+++|+.||.|.++++.
T Consensus 179 ----------------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 179 ----------------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp ----------------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred ----------------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 000234579999999995 999999999999999999999
Q ss_pred eCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhHHHHHHHHhh
Q 012257 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410 (467)
Q Consensus 355 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~ 410 (467)
.+.+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|+|++++..++....++
T Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~ 274 (284)
T 3smz_A 219 CGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAAL 274 (284)
T ss_dssp ECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHH
T ss_pred ECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhh
Confidence 99999999999999999999999999999999999999999998877665544443
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.2e-45 Score=337.53 Aligned_cols=256 Identities=20% Similarity=0.376 Sum_probs=213.7
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
.....+.+++++|||+|||+++++++|+++|+.||.|.+|++.++..+ ++|||||+|.+.++|.+|++ +++..+.|+
T Consensus 32 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~ 108 (292)
T 2ghp_A 32 NEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQN 108 (292)
T ss_dssp ----------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCc
Confidence 335566778999999999999999999999999999999999998744 57999999999999999996 899999999
Q ss_pred eeeeeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcC-CeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 012257 110 PIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188 (467)
Q Consensus 110 ~~~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l 188 (467)
.+.|.++ ..++|||+|||..+++++|+++|+.|| .|..+.+..+..|.++|||||+|.+.++|..|++.|
T Consensus 109 ~i~v~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 109 EIIVSHL---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp ECEEEEC---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHH
T ss_pred EEEEEEC---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 9999876 356899999999999999999999999 999999999877889999999999999999999999
Q ss_pred cCCccCCeeeEecccccccccccccccccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCC
Q 012257 189 NGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDD 268 (467)
Q Consensus 189 ~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~ 268 (467)
+|..+.|+.|.+.++.........
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~~~~-------------------------------------------------------- 203 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKSKRT-------------------------------------------------------- 203 (292)
T ss_dssp TTCEETTEECEEEECCCC--------------------------------------------------------------
T ss_pred CCCEeCCcEEEEEECCCCcccccc--------------------------------------------------------
Confidence 999999999999765432110000
Q ss_pred HHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCC-CCHHHHHHhhccCCc
Q 012257 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS-ISDDKLKELFSEFGT 347 (467)
Q Consensus 269 ~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~~~~~l~~~F~~~G~ 347 (467)
.......++|||+|||.. +++++|+++|++||.
T Consensus 204 ----------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~ 237 (292)
T 2ghp_A 204 ----------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGS 237 (292)
T ss_dssp -------------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC
T ss_pred ----------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCC
Confidence 001224558999999999 999999999999999
Q ss_pred eeEEEEeeCCC--CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 348 ITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 348 v~~v~i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
|.+|+++.+.. |.++|||||+|.+.++|.+|+ .|||..|+|+.|.|+|++++
T Consensus 238 v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 238 IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999887 999999999999999999999 99999999999999999864
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5e-35 Score=254.69 Aligned_cols=171 Identities=61% Similarity=1.054 Sum_probs=158.4
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.++++|||+|||++++|++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 012257 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (467)
Q Consensus 117 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~ 196 (467)
............+|||+|||..+++++|+++|+.||.|.++.++.+.. .++|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 877666666778999999999999999999999999999999998753 3799999999999999999999999999999
Q ss_pred eeEecccccccc
Q 012257 197 QVFVGPFLRKQE 208 (467)
Q Consensus 197 ~~~v~~~~~~~~ 208 (467)
.|.|.++..+..
T Consensus 172 ~i~V~~a~~~~~ 183 (213)
T 4f02_A 172 KVFVGRFKSRKE 183 (213)
T ss_dssp ECEEEECCCHHH
T ss_pred EEEEEEcCCCcc
Confidence 999988766543
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=230.44 Aligned_cols=164 Identities=28% Similarity=0.556 Sum_probs=154.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
|+|||+|||+++++++|+++|+.||.|.+|++.+++ .++++|||||+|.+.++|.+|++.+++..+.|+.++|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999997 4779999999999999999999999999999999999999877
Q ss_pred cccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 012257 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (467)
Q Consensus 120 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~ 198 (467)
.........+|+|+|||..+++++|+++|+.||.|..+.+..+ .+|.++|+|||+|.+.++|.+|++.|+|..+.|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777777889999999999999999999999999999999998 788999999999999999999999999999999999
Q ss_pred Eecccc
Q 012257 199 FVGPFL 204 (467)
Q Consensus 199 ~v~~~~ 204 (467)
.|.++.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 997753
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.7e-32 Score=238.62 Aligned_cols=174 Identities=35% Similarity=0.527 Sum_probs=155.7
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~ 295 (467)
..++|||+|||..+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|..|+..+++..+.|+.+.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4478999999999999999999999999999999998 468899999999999999999999999999999999998887
Q ss_pred cchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHH
Q 012257 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (467)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A 375 (467)
........ ...+|||+|||..+++++|+++|++||.|.+|+|+.+.. .++|||||+|.+.++|
T Consensus 94 ~~~~~~~~----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 94 RDPSLRKS----------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCTHHHHH----------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHH
T ss_pred cccccccc----------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHH
Confidence 65433211 234799999999999999999999999999999999864 4799999999999999
Q ss_pred HHHHHHhCCcEecccceEEehhhhhHHHHHHH
Q 012257 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARL 407 (467)
Q Consensus 376 ~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~ 407 (467)
.+|++.|||..|+|+.|.|++++++.++....
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 99999999999999999999999887655543
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.8e-32 Score=228.20 Aligned_cols=163 Identities=28% Similarity=0.527 Sum_probs=151.8
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
++++|||+|||+++++++|+++|+.||.|.+|++.+++.+|+++|||||+|.+.++|++|++.+++..+.|+.++|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCC-
Q 012257 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND- 195 (467)
Q Consensus 118 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g- 195 (467)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+ .+|.++|+|||+|.+.++|.+|++.|+|..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 5433 345678999999999999999999999999999999998 488999999999999999999999999999987
Q ss_pred -eeeEecc
Q 012257 196 -KQVFVGP 202 (467)
Q Consensus 196 -~~~~v~~ 202 (467)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8888754
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.9e-32 Score=226.89 Aligned_cols=163 Identities=32% Similarity=0.552 Sum_probs=150.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
++++|||+|||+++++++|+++|+.||.|.+|++.+++.+|+++|||||+|.+.++|.+|++.+++..+.|+.++|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999999887
Q ss_pred cCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 012257 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (467)
Q Consensus 118 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~ 196 (467)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+ .+|.++|+|||+|.+.++|.+|++.|+|..+.|+
T Consensus 81 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 5433 344578999999999999999999999999999999998 5888999999999999999999999999999997
Q ss_pred e--eEecc
Q 012257 197 Q--VFVGP 202 (467)
Q Consensus 197 ~--~~v~~ 202 (467)
. |.+.+
T Consensus 159 ~~~i~v~~ 166 (167)
T 1fxl_A 159 TEPITVKF 166 (167)
T ss_dssp SSCCEEEE
T ss_pred ccceEEEe
Confidence 6 55543
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.2e-32 Score=233.46 Aligned_cols=175 Identities=25% Similarity=0.436 Sum_probs=151.6
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||+++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445689999999999999999999999999999999999999999999999999999999999985 888999999999
Q ss_pred eecccCcccc----cCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHh
Q 012257 114 MYSYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188 (467)
Q Consensus 114 ~~~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l 188 (467)
.++....... .....+|||+|||.++++++|+++|+.||.|..+.+..+ .+|.++|||||+|.+.++|.+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9976543322 223478999999999999999999999999999999998 5889999999999999999999986
Q ss_pred cCCccCCeeeEecccccccccc
Q 012257 189 NGMLLNDKQVFVGPFLRKQERE 210 (467)
Q Consensus 189 ~~~~~~g~~~~v~~~~~~~~~~ 210 (467)
++..+.|+.|.|.++..+....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 7999999999999887765543
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.5e-32 Score=236.24 Aligned_cols=171 Identities=22% Similarity=0.471 Sum_probs=154.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.++++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999887
Q ss_pred ccCccc---------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHH
Q 012257 117 YRDPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAID 186 (467)
Q Consensus 117 ~~~~~~---------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~ 186 (467)
...... ......+|||+|||.++++++|+++|+.||.|..+.+..+ .+|.++|+|||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 654321 2245579999999999999999999999999999999998 688999999999999999999999
Q ss_pred HhcCCccCCeeeEeccccccc
Q 012257 187 KLNGMLLNDKQVFVGPFLRKQ 207 (467)
Q Consensus 187 ~l~~~~~~g~~~~v~~~~~~~ 207 (467)
.|+|..+.|+.|.|.++..+.
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999998876653
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=3.9e-31 Score=223.67 Aligned_cols=165 Identities=24% Similarity=0.391 Sum_probs=147.0
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC--ccccEEEEEecChHHHHHHHHHhCCcccC---Cceee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNYNAAHEATRALDELNFTPLN---GKPIR 112 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~~~ 112 (467)
++++|||+|||+++++++|+++|++||.|.+|++.+++.++ +++|||||+|.+.++|++|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999999887 89999999999999999999999987765 56677
Q ss_pred eeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCc
Q 012257 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (467)
Q Consensus 113 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~ 192 (467)
+.++..... .....++|+|+|||..+++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.|+|..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 766554322 2335678999999999999999999999999999999999889999999999999999999999999987
Q ss_pred cC---CeeeEeccc
Q 012257 193 LN---DKQVFVGPF 203 (467)
Q Consensus 193 ~~---g~~~~v~~~ 203 (467)
+. ++.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 65 388888654
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.1e-32 Score=226.26 Aligned_cols=165 Identities=22% Similarity=0.472 Sum_probs=149.9
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
+++++|||+|||+++++++|+++|+.||.|.+|++.+++.+|+++|||||+|.+.++|.+|++. +..+.|+.+.+.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999984 56789999999887
Q ss_pred ccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCC
Q 012257 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (467)
Q Consensus 117 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g 195 (467)
..... ....++|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|+|||+|.+.++|.+|++ +++..+.|
T Consensus 79 ~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 79 IPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred cchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 54332 234568999999999999999999999999999999988 679999999999999999999998 89999999
Q ss_pred eeeEecccccc
Q 012257 196 KQVFVGPFLRK 206 (467)
Q Consensus 196 ~~~~v~~~~~~ 206 (467)
+.|.|.++.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999877543
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-31 Score=220.38 Aligned_cols=164 Identities=31% Similarity=0.524 Sum_probs=151.0
Q ss_pred cceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccch
Q 012257 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (467)
Q Consensus 219 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~ 298 (467)
++|||+|||..+++++|+++|+.||.|.++.+..+..++++|+|||+|.+.++|..|+..+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 46999999999999999999999999999999999888899999999999999999999999999999999998886532
Q ss_pred HHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHH
Q 012257 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASK 377 (467)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~ 377 (467)
. .......+|||+|||..+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 1 223456789999999999999999999999999999999984 78899999999999999999
Q ss_pred HHHHhCCcEecccceEEehhh
Q 012257 378 ALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 378 A~~~l~g~~~~g~~l~v~~~~ 398 (467)
|++.|||..++|+.|+|+|++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHTTCEETTEECEEEESC
T ss_pred HHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999986
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=4.9e-30 Score=215.16 Aligned_cols=162 Identities=33% Similarity=0.621 Sum_probs=148.9
Q ss_pred ccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
.++|||+|||..+++++|+++|+.||.|.++.+..+. ++.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 3689999999999999999999999999999999986 789999999999999999999999999999999999988875
Q ss_pred chHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHH
Q 012257 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A 375 (467)
... .....+|||+|||..+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 321 1245689999999999999999999999999999999987 788999999999999999
Q ss_pred HHHHHHhCCcEecccc--eEEehh
Q 012257 376 SKALTEMNGKMVVSKP--LYVALA 397 (467)
Q Consensus 376 ~~A~~~l~g~~~~g~~--l~v~~~ 397 (467)
.+|++.|||..+.|+. |+|+||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999975 888875
No 14
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=5.8e-30 Score=224.21 Aligned_cols=177 Identities=27% Similarity=0.432 Sum_probs=153.1
Q ss_pred cccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccc
Q 012257 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (467)
Q Consensus 217 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~ 295 (467)
..++|||+|||.++++++|+++|+.||.|.++.+..+. ++.++|||||+|.+.++|..|+..+++..+.|+.+.+.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34789999999999999999999999999999998874 78899999999999999999999999999999999998887
Q ss_pred cchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHH
Q 012257 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (467)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~ 374 (467)
............ .......++|||+|||..+++++|+++|++||.|.+|++..+. +|.++|+|||+|.+.++
T Consensus 107 ~~~~~~~~~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 107 NIGQAQPIIDQL-------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCGGGHHHHHHH-------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccccchhhhhh-------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 654332211111 1122355789999999999999999999999999999999986 78899999999999999
Q ss_pred HHHHHHHhCCcEecccceEEehhhhh
Q 012257 375 ASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
|.+|++.|||..|+|+.|+|.|+.+.
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCC
Confidence 99999999999999999999998743
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=6.8e-30 Score=220.18 Aligned_cols=177 Identities=23% Similarity=0.426 Sum_probs=148.6
Q ss_pred cccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcc
Q 012257 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293 (467)
Q Consensus 215 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~ 293 (467)
....++|||+|||..+++++|+++|+.||.|.++.+..+ .++.++|||||+|.+.++|..|+.. ++..+.|+.+.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345688999999999999999999999999999999998 4588999999999999999999985 89999999999998
Q ss_pred cccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCH
Q 012257 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (467)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~ 372 (467)
+........ .......++|||+|||..+++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.
T Consensus 89 ~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 876432211 1122355789999999999999999999999999999999986 788999999999999
Q ss_pred HHHHHHHHHhCCcEecccceEEehhhhhHHHHH
Q 012257 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405 (467)
Q Consensus 373 ~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~ 405 (467)
++|.+|+.. +|..++|+.|.|+++.++.+...
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 999999986 89999999999999998876544
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.7e-31 Score=223.62 Aligned_cols=167 Identities=19% Similarity=0.307 Sum_probs=148.9
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||.++++++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|++ +++..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 44567899999999999999999999999997766 344455678899999999999999999995 9999999999999
Q ss_pred eecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCcc
Q 012257 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193 (467)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~ 193 (467)
.++............+|||+|||..+++++|+++|+.||.|..+ ..+|.++|+|||+|.+.++|.+|++.|+|..+
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 99987766666778899999999999999999999999988665 66778999999999999999999999999999
Q ss_pred CCeeeEecccccc
Q 012257 194 NDKQVFVGPFLRK 206 (467)
Q Consensus 194 ~g~~~~v~~~~~~ 206 (467)
.|+.|.|.++.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999877543
No 17
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=4e-30 Score=215.83 Aligned_cols=162 Identities=34% Similarity=0.574 Sum_probs=149.8
Q ss_pred ccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
.++|+|+|||..+++++|+++|+.||.|.++.+..+ .++.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 478999999999999999999999999999999887 4688999999999999999999999999999999999998875
Q ss_pred chHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHH
Q 012257 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A 375 (467)
... ....++|||+|||..+++++|+++|++||.|.++++.++. +|.++|+|||+|.+.++|
T Consensus 83 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 83 GGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp CSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 421 2345689999999999999999999999999999999987 888999999999999999
Q ss_pred HHHHHHhCCcEecc--cceEEehh
Q 012257 376 SKALTEMNGKMVVS--KPLYVALA 397 (467)
Q Consensus 376 ~~A~~~l~g~~~~g--~~l~v~~~ 397 (467)
.+|++.|||..+.| ++|+|+||
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999987 99999986
No 18
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.4e-29 Score=213.30 Aligned_cols=158 Identities=24% Similarity=0.515 Sum_probs=143.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
+++++|||+|||+++++++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 468999999999999999999999999 6 778877754 3589999999999999999 799999
Q ss_pred cCCceeeeeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHH
Q 012257 106 LNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184 (467)
Q Consensus 106 ~~g~~~~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a 184 (467)
+.|+.++|.++..... .....+|+|+|||..+++++|+++|+.||.|..+.+..+ .+|.++|+|||+|.+.++|.+|
T Consensus 75 ~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999998754432 344689999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHHhcCCccCCeeeEeccc
Q 012257 185 IDKLNGMLLNDKQVFVGPF 203 (467)
Q Consensus 185 ~~~l~~~~~~g~~~~v~~~ 203 (467)
++.|+|..+.|+.|.|.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999765
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.5e-29 Score=213.91 Aligned_cols=164 Identities=27% Similarity=0.513 Sum_probs=144.8
Q ss_pred ccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCC---CceeEEEEEeCCHHHHHHHHHHhCCCccC---CceEEE
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG---KSKCFGFVNFDDPDDAARSVEALNGKKFD---DKEWYV 291 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~l~~ 291 (467)
.++|||+|||..+++++|+++|++||.|.++.+..+..+ +++|||||+|.+.++|..|+..+++..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 478999999999999999999999999999999988655 78999999999999999999999998775 456666
Q ss_pred cccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCC
Q 012257 292 GKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST 371 (467)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~ 371 (467)
.++.... ......++|||+|||..+++++|+++|++||.|.++++..+.+|.++|||||+|.+
T Consensus 83 ~~~~~~~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 83 KPADSEK-----------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp EECGGGC-----------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred ccccccc-----------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 5554321 11234568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEec---ccceEEehhh
Q 012257 372 AEEASKALTEMNGKMVV---SKPLYVALAQ 398 (467)
Q Consensus 372 ~~~A~~A~~~l~g~~~~---g~~l~v~~~~ 398 (467)
.++|.+|++.|||..+. |++|+|+||.
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999998876 4999999974
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.3e-29 Score=229.80 Aligned_cols=172 Identities=20% Similarity=0.304 Sum_probs=158.5
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
..++|||+|||+++++++|+++|+.||.|.++.+..++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCcccc-cCCCccEEEcCCCCcC-CHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCC
Q 012257 118 RDPTIR-KSGAGNIFIKNLDKSI-DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (467)
Q Consensus 118 ~~~~~~-~~~~~~l~v~nlp~~~-t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g 195 (467)
...... .....+|+|+|||..+ ++++|+++|+.||.|.++.+..+.+|.++|+|||+|.+.++|.+|+..|+|..+.|
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 654332 2456789999999995 99999999999999999999999889999999999999999999999999999999
Q ss_pred eeeEeccccccccc
Q 012257 196 KQVFVGPFLRKQER 209 (467)
Q Consensus 196 ~~~~v~~~~~~~~~ 209 (467)
+.|.|.++.++...
T Consensus 254 ~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 254 SHLRVSFCAPGPPG 267 (284)
T ss_dssp EECEEEECCSSSCH
T ss_pred eEEEEEEecCCCcc
Confidence 99999988766543
No 21
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.9e-29 Score=216.57 Aligned_cols=155 Identities=18% Similarity=0.266 Sum_probs=135.3
Q ss_pred CccCeEEEcCCC-CCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 37 FVSTSLYVGDLD-LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp-~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
.++++|||+||| .++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998763 58999999999999999999999999999999998
Q ss_pred cccCcccc-----------------------------------cCCCccEEEcCCCCcCCHHHHHHHHhhcCCe--EEEE
Q 012257 116 SYRDPTIR-----------------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI--LSCK 158 (467)
Q Consensus 116 ~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v--~~~~ 158 (467)
+....... .....+|||+|||..+++++|+++|+.||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 75321100 0123469999999999999999999999999 8898
Q ss_pred EeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 012257 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197 (467)
Q Consensus 159 ~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~ 197 (467)
+..+. +.++|+|||+|.+.++|..|+..|||..+.|..
T Consensus 157 ~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 157 VFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp ECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 88765 445699999999999999999999999988773
No 22
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=3.8e-29 Score=215.87 Aligned_cols=163 Identities=23% Similarity=0.492 Sum_probs=143.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
+.+++|||+|||+++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|++|+ .+++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 568999999999999999999999999 5 66666653 45689999999999999999 799999
Q ss_pred cCCceeeeeecccCccc------------------ccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCC
Q 012257 106 LNGKPIRIMYSYRDPTI------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQ 166 (467)
Q Consensus 106 ~~g~~~~v~~~~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~ 166 (467)
+.|+.|+|.++...... .....++|||+|||..+++++|+++|+.||.|..+.+..+ .+|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999987654211 1245579999999999999999999999999999999998 5899
Q ss_pred ceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccc
Q 012257 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (467)
Q Consensus 167 ~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~ 206 (467)
++|+|||+|.+.++|..|++.|+|..+.|+.|.|.++..+
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999999999999887554
No 23
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=8e-29 Score=225.98 Aligned_cols=162 Identities=24% Similarity=0.431 Sum_probs=143.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
..+++++|||+|||+++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.+++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34668999999999999999966 8999999999999885 6778999999999999999999999999999999
Q ss_pred eeeeecccCcc---------------------------------------------------------------------
Q 012257 111 IRIMYSYRDPT--------------------------------------------------------------------- 121 (467)
Q Consensus 111 ~~v~~~~~~~~--------------------------------------------------------------------- 121 (467)
|+|.++.....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99998755332
Q ss_pred ----------------------------------------cccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEee
Q 012257 122 ----------------------------------------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161 (467)
Q Consensus 122 ----------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~ 161 (467)
......++|||+|||..+++++|+++|+.||.|.++.+..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 0111346799999999999999999999999999999986
Q ss_pred CCCCCceeEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEeccc
Q 012257 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPF 203 (467)
Q Consensus 162 ~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~-g~~~~v~~~ 203 (467)
+ .+|+|||+|.+.++|.+|++.|+|..+. |+.|.|.++
T Consensus 242 ~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 242 G----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred C----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 4 2589999999999999999999999999 999999775
No 24
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.1e-29 Score=213.00 Aligned_cols=162 Identities=27% Similarity=0.508 Sum_probs=146.1
Q ss_pred ccceeecCCCccCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
.++|||+|||.++++++|+++|+.||.|.++.+..+ .++.++|||||+|.+.++|..|+.. +..+.|+.+.+.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 478999999999999999999999999999999888 4688999999999999999999984 5688899998887765
Q ss_pred chHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHH
Q 012257 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (467)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A 375 (467)
..... ...+|||+|||..+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++|
T Consensus 81 ~~~~~------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 81 RDEQD------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp HHHHH------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred hhhcc------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 43211 24579999999999999999999999999999999986 789999999999999999
Q ss_pred HHHHHHhCCcEecccceEEehhhhh
Q 012257 376 SKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 376 ~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
.+|++ ++|..++|+.|.|+|+.++
T Consensus 143 ~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99998 8999999999999999764
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1e-28 Score=217.42 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=142.9
Q ss_pred CCCccCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 35 RQFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
...++++|||+|||+ ++++++|+++|+.||.|.+|++.+++ +|||||+|.+.++|++|++.+++..+.|+.|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345689999999999 99999999999999999999999876 479999999999999999999999999999999
Q ss_pred eecccCcccc---------------------------------cCCCccEEEcCCCCcCCHHHHHHHHhhcC-CeEEEEE
Q 012257 114 MYSYRDPTIR---------------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKV 159 (467)
Q Consensus 114 ~~~~~~~~~~---------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~ 159 (467)
.++....... .....+|||+|||..+++++|+++|+.|| .|..+.+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 9876431100 11246799999999999999999999999 9999998
Q ss_pred eeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEeccccc
Q 012257 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLR 205 (467)
Q Consensus 160 ~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~-g~~~~v~~~~~ 205 (467)
..+ .+++|||+|.+.++|.+|++.|+|..+. |+.|.+.++..
T Consensus 185 ~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 185 FQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 653 4689999999999999999999999999 99999987643
No 26
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=4.4e-28 Score=217.67 Aligned_cols=161 Identities=28% Similarity=0.512 Sum_probs=144.9
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.....++++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 334456899999999999999999999999999999999654 47999999999999999999999999999999
Q ss_pred eeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhc-CC
Q 012257 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN-GM 191 (467)
Q Consensus 113 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~-~~ 191 (467)
|.++.. ..+|||+|||..+++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|..|+..|+ +.
T Consensus 90 v~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 90 IRFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp EEECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred eeeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 998853 468999999999999999999999999999999999899999999999999999999999995 44
Q ss_pred ccC---CeeeEeccccccc
Q 012257 192 LLN---DKQVFVGPFLRKQ 207 (467)
Q Consensus 192 ~~~---g~~~~v~~~~~~~ 207 (467)
.+. ++.+.|.++....
T Consensus 162 ~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 162 FLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EESSSSCCBCEEEECCCEE
T ss_pred EEecCCCceEEEeeccccC
Confidence 444 8999998776543
No 27
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.3e-28 Score=225.66 Aligned_cols=167 Identities=20% Similarity=0.343 Sum_probs=145.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
..++|||+|||+++++++|+++|+.|| .|.+|.+.+++. +.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 479999999999999999999999999 999999998875 788999999999999999999999999999999999998
Q ss_pred ccCccc-----ccCCCccEEEcCCCCc-CCHHHHHHHHhhcCCeEEEEEeeCCC--CCceeEEEEEeCCHHHHHHHHHHh
Q 012257 117 YRDPTI-----RKSGAGNIFIKNLDKS-IDNKALHDTFSTFGNILSCKVATDSL--GQSRGYGFVQFDNEESAKSAIDKL 188 (467)
Q Consensus 117 ~~~~~~-----~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~~~~~~~~~--g~~~~~afV~f~~~~~A~~a~~~l 188 (467)
...... ......+|||+|||.. +++++|+++|+.||.|..+.+..+.. |.++|+|||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 655432 2235678999999999 99999999999999999999998865 899999999999999999999 99
Q ss_pred cCCccCCeeeEecccccc
Q 012257 189 NGMLLNDKQVFVGPFLRK 206 (467)
Q Consensus 189 ~~~~~~g~~~~v~~~~~~ 206 (467)
+|..+.|+.|.|.++..+
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999887653
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.1e-28 Score=211.69 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=140.8
Q ss_pred ccceeecCCC-ccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 218 FNNVYVKNLS-ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 218 ~~~l~v~nlp-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
.++|||+||+ ..+++++|+++|+.||.|.++.++.+ .+|+|||+|.+.++|..|+..|+|..+.|+.|.+.++..
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4689999999 89999999999999999999998764 368999999999999999999999999999999998864
Q ss_pred chHHHHH---h-hhh-----hhhh----------hhccccCCCCceEEEecCCCCCCHHHHHHhhccCCce--eEEEEee
Q 012257 297 KYEREME---L-KGK-----FEQS----------LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI--TSCKVMR 355 (467)
Q Consensus 297 ~~~~~~~---~-~~~-----~~~~----------~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v--~~v~i~~ 355 (467)
....... . ... .... ........++.+|||+|||+.+++++|+++|++||.| .++++..
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 3210000 0 000 0000 0000112456789999999999999999999999999 8999988
Q ss_pred CCCCCccceEEEEcCCHHHHHHHHHHhCCcEeccc----ceEEehh
Q 012257 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK----PLYVALA 397 (467)
Q Consensus 356 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~~ 397 (467)
+. +.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|+|+
T Consensus 160 ~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 160 GK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 76 55579999999999999999999999999876 5666654
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.3e-28 Score=205.93 Aligned_cols=156 Identities=23% Similarity=0.464 Sum_probs=140.9
Q ss_pred ccceeecCCCccCCHHHHHHhhccc----C-------CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCC
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEF----G-------IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 286 (467)
.++|||+|||..+++++|+++|++| | .|.++.+.. ++|+|||+|.+.++|..|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 4789999999999999999999999 6 677766653 4789999999999999999 899999999
Q ss_pred ceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceE
Q 012257 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSG 365 (467)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~a 365 (467)
+.+.+.++.... ......+|||+|||..+++++|+++|++||.|.++++..+. +|.++|+|
T Consensus 78 ~~i~v~~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 78 QSLKIRRPHDYQ------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp EECEEECCSSCC------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred ceeeecCCcccC------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 999998865431 11235689999999999999999999999999999999996 89999999
Q ss_pred EEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 366 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
||+|.+.++|.+|++.|||..++|+.|.|+||
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999999999987
No 30
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.4e-28 Score=210.62 Aligned_cols=159 Identities=24% Similarity=0.292 Sum_probs=140.9
Q ss_pred ccCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 38 VSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 38 ~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+++|||+|||+ ++++++|+++|+.||.|.+|++.+++ +|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998875 479999999999999999999999999999999987
Q ss_pred ccCcccc---------------------------------cCCCccEEEcCCCCcCCHHHHHHHHhhcC-CeEEEEEeeC
Q 012257 117 YRDPTIR---------------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATD 162 (467)
Q Consensus 117 ~~~~~~~---------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~~~~~~~ 162 (467)
....... .....+|+|+|||..+++++|+++|+.|| .|.++.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 6431100 11256799999999999999999999999 9999998764
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHHhcCCccC-CeeeEeccccc
Q 012257 163 SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLR 205 (467)
Q Consensus 163 ~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~-g~~~~v~~~~~ 205 (467)
.+|+|||+|.+.++|..|+..|+|..+. |+.|.+.++..
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4789999999999999999999999999 99999877643
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=8.8e-28 Score=219.06 Aligned_cols=177 Identities=23% Similarity=0.395 Sum_probs=146.9
Q ss_pred ccccceeecCCCccCCHHHHH----HhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 012257 216 TRFNNVYVKNLSETTTEDDLK----KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291 (467)
Q Consensus 216 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~ 291 (467)
...++|||+|||..+++++|+ ++|+.||.|.++.+.. +++++|||||+|.+.++|..|+..+++..+.|+.+.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 345789999999999999976 8999999999998875 6778999999999999999999999999999999999
Q ss_pred cccccchHHHHHhhhhhhhh------------------------------------------------------------
Q 012257 292 GKAQKKYEREMELKGKFEQS------------------------------------------------------------ 311 (467)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 311 (467)
.++.................
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 99865442111100000000
Q ss_pred ---------------------------------hhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC
Q 012257 312 ---------------------------------LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358 (467)
Q Consensus 312 ---------------------------------~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~ 358 (467)
..........++|||+|||..+++++|+++|++||.|.+|++..+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 0000223356789999999999999999999999999999999763
Q ss_pred CCccceEEEEcCCHHHHHHHHHHhCCcEec-ccceEEehhh
Q 012257 359 GISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQ 398 (467)
Q Consensus 359 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 398 (467)
+|+|||+|.+.++|.+|++.|||..++ |+.|+|+|++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 579999999999999999999999999 9999999986
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=5e-29 Score=210.48 Aligned_cols=165 Identities=25% Similarity=0.393 Sum_probs=142.8
Q ss_pred cccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccc
Q 012257 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (467)
Q Consensus 215 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~ 294 (467)
....++|||+|||..+++++|+++|..||.+..+.+....++.++|||||+|.+.++|..|++ +++..+.|+.+.+.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 345588999999999999999999999987666333333556789999999999999999995 9999999999999998
Q ss_pred ccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHH
Q 012257 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374 (467)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~ 374 (467)
..... ......++|||+|||..+++++|+++|++||.|..+ ..++.++|+|||+|.+.++
T Consensus 89 ~~~~~----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 89 KGRDS----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp CCSSC----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHH
T ss_pred CCccc----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHH
Confidence 76421 112245689999999999999999999999998766 5678899999999999999
Q ss_pred HHHHHHHhCCcEecccceEEehhhhh
Q 012257 375 ASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
|.+|++.|||..++|+.|+|+|++++
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999764
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=6.1e-28 Score=208.30 Aligned_cols=177 Identities=21% Similarity=0.394 Sum_probs=145.9
Q ss_pred ccceeecCCCccCCHHHHHHhhccc----C-------CeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCC
Q 012257 218 FNNVYVKNLSETTTEDDLKKIFGEF----G-------IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (467)
Q Consensus 218 ~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 286 (467)
.++|||+|||..+++++|+++|+.| | .|.++.+. .++|||||+|.+.++|..|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 4789999999999999999999999 5 56665553 45889999999999999999 899999999
Q ss_pred ceEEEcccccchHHHHHhhh--hhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccc
Q 012257 287 KEWYVGKAQKKYEREMELKG--KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRG 363 (467)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g 363 (467)
+.+.+.++............ ...............++|||+|||..+++++|+++|++||.|.++++..+. +|.++|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999988654211000000 000000111223567899999999999999999999999999999999996 889999
Q ss_pred eEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 364 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
||||+|.+.++|.+|++.|||..++|+.|+|+|+++.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999999999999764
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=2e-27 Score=209.03 Aligned_cols=177 Identities=21% Similarity=0.302 Sum_probs=145.4
Q ss_pred ccccceeecCCCc-cCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccc
Q 012257 216 TRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (467)
Q Consensus 216 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~ 294 (467)
...++|||+|||. .+++++|+++|+.||.|.++.+..+. +|||||+|.+.++|..|+..+++..+.|+.+.+.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4457899999999 99999999999999999999998764 679999999999999999999999999999999988
Q ss_pred ccchHHH-------HHhhhhhh----------hhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCC-ceeEEEEeeC
Q 012257 295 QKKYERE-------MELKGKFE----------QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRD 356 (467)
Q Consensus 295 ~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~~ 356 (467)
....... ........ ..........+.++|||+|||..+++++|+++|++|| .|.++++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 6431100 00000000 0000011124568999999999999999999999999 9999999764
Q ss_pred CCCCccceEEEEcCCHHHHHHHHHHhCCcEec-ccceEEehhhhh
Q 012257 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQRK 400 (467)
Q Consensus 357 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 400 (467)
.+|+|||+|.+.++|.+|++.|||..++ |+.|+|+|+++.
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3679999999999999999999999999 999999998753
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=8.5e-27 Score=209.25 Aligned_cols=157 Identities=29% Similarity=0.501 Sum_probs=143.5
Q ss_pred cccccceeecCCCccCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccc
Q 012257 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (467)
Q Consensus 215 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~ 294 (467)
....++|||+|||.++++++|+++|+.||.|..+.+.. ++|||||+|.+.++|..|+..+++..+.|+.+.+.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34557899999999999999999999999999999864 3789999999999999999999999999999999887
Q ss_pred ccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHH
Q 012257 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374 (467)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~ 374 (467)
.. ..+|||+|||..+++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++
T Consensus 94 ~~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 TH------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CC------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred cc------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 53 347999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CcEec---ccceEEehhhhh
Q 012257 375 ASKALTEMN-GKMVV---SKPLYVALAQRK 400 (467)
Q Consensus 375 A~~A~~~l~-g~~~~---g~~l~v~~~~~~ 400 (467)
|.+|+..|| +..+. +++|.|.++...
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999995 55554 999999998754
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=2.1e-27 Score=204.62 Aligned_cols=174 Identities=22% Similarity=0.307 Sum_probs=143.3
Q ss_pred ccceeecCCCc-cCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEccccc
Q 012257 218 FNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (467)
Q Consensus 218 ~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~ 296 (467)
.++|||+|||. .+++++|+++|+.||.|.++.+..+. +|+|||+|.+.++|..|+..+++..+.|+.+.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 36899999999 99999999999999999999988753 67999999999999999999999999999999998865
Q ss_pred chHHHHHhh----h---hhh----------hhhhccccCCCCceEEEecCCCCCCHHHHHHhhccCC-ceeEEEEeeCCC
Q 012257 297 KYEREMELK----G---KFE----------QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDPN 358 (467)
Q Consensus 297 ~~~~~~~~~----~---~~~----------~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~~~~ 358 (467)
......... . ... ..........+.++|||+|||..+++++|+++|++|| .|.++++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 321100000 0 000 0000001123578999999999999999999999999 9999999775
Q ss_pred CCccceEEEEcCCHHHHHHHHHHhCCcEec-ccceEEehhhh
Q 012257 359 GISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399 (467)
Q Consensus 359 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~ 399 (467)
.+|+|||+|.+.++|.+|+..|||..++ |+.|+|+|+++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 2689999999999999999999999999 99999999875
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4.1e-22 Score=154.35 Aligned_cols=104 Identities=28% Similarity=0.475 Sum_probs=74.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
.+++|||+|||++++|++|+++|+.||.|.+|+|.+++ +.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 36789999999999999999999999999999999986 4588999999999999999999999999999999999876
Q ss_pred cCccc------ccCCCccEEEcCCCCcCCHHH
Q 012257 118 RDPTI------RKSGAGNIFIKNLDKSIDNKA 143 (467)
Q Consensus 118 ~~~~~------~~~~~~~l~v~nlp~~~t~~~ 143 (467)
..... .....++|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 54332 122345799999999998764
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=1e-21 Score=162.09 Aligned_cols=147 Identities=22% Similarity=0.286 Sum_probs=110.0
Q ss_pred EEEEECCCCCceeEEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEe
Q 012257 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327 (467)
Q Consensus 248 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 327 (467)
+.++.+.. +++|||||+|.+.++|.+|+..+++....+..+........... .................+|||+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV-----TEGSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE-----ECCCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc-----cccccccccccCCCCCCEEEEe
Confidence 34444433 57999999999999999999887754333333322211110000 0000011112223456799999
Q ss_pred cCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 328 nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|+++.
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999986 7899999999999999999999999999999999999999754
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=145.01 Aligned_cols=81 Identities=40% Similarity=0.668 Sum_probs=77.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
..+++|||+|||..+|+++|+++|++||.|.+|+++++. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred hh
Q 012257 398 QR 399 (467)
Q Consensus 398 ~~ 399 (467)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=144.29 Aligned_cols=82 Identities=38% Similarity=0.609 Sum_probs=78.3
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
...++|||+|||++++|++|+++|++||.|.+|++.+|+.+|+++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 012257 117 YR 118 (467)
Q Consensus 117 ~~ 118 (467)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 53
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.7e-20 Score=154.83 Aligned_cols=138 Identities=17% Similarity=0.270 Sum_probs=109.7
Q ss_pred EEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc-cCCce------eeeeeccc----CcccccCCCccEEEcCCC
Q 012257 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNGKP------IRIMYSYR----DPTIRKSGAGNIFIKNLD 136 (467)
Q Consensus 68 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~------~~v~~~~~----~~~~~~~~~~~l~v~nlp 136 (467)
++++..+.. +++|||||+|.+.++|++|++.+++.. +.|.. ........ ..........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777654 588999999999999999998876432 22211 11111111 111122346799999999
Q ss_pred CcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccccc
Q 012257 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (467)
Q Consensus 137 ~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~~ 207 (467)
.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++....
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999998 689999999999999999999999999999999999998876543
No 42
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=141.25 Aligned_cols=92 Identities=14% Similarity=0.271 Sum_probs=83.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
.+.++|||+|||+.+++++|+++|++||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhh
Q 012257 398 QRKEERRARLQAQ 410 (467)
Q Consensus 398 ~~~~~~~~~~~~~ 410 (467)
.....+.......
T Consensus 84 ~~~~~~~~~~~~~ 96 (110)
T 3s8s_A 84 IKGQQRMKYYELI 96 (110)
T ss_dssp STTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHh
Confidence 8777665544443
No 43
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=3e-21 Score=157.59 Aligned_cols=138 Identities=21% Similarity=0.307 Sum_probs=112.8
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHh-CCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCC
Q 012257 256 GKSKCFGFVNFDDPDDAARSVEAL-NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334 (467)
Q Consensus 256 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~ 334 (467)
...+|+++++|.+.++|.+|+..+ ++..++| .+.+.++......... ................++|||+|||..++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG--SHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS--SSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc--cccccccccccCCCCCCEEEEeCCCCCCC
Confidence 356889999999999999999999 9999999 9999887653211000 00000111223345678999999999999
Q ss_pred HHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 335 ~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|+|++++
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999887 5789999999999999999999999999999999998764
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=139.89 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=79.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+.++|||+|||++++|++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q 012257 117 YRD 119 (467)
Q Consensus 117 ~~~ 119 (467)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=8.3e-21 Score=139.99 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=76.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhC-CcccCCceeeeeec
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN-FTPLNGKPIRIMYS 116 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~~~~~g~~~~v~~~ 116 (467)
|++|||+|||++++|++|+++|+.|| .|.+|++++|+.+|+++|||||+|.+.++|++|++.++ +..+.|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999998774 56799999999998
Q ss_pred ccCcc
Q 012257 117 YRDPT 121 (467)
Q Consensus 117 ~~~~~ 121 (467)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76544
No 46
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-19 Score=142.82 Aligned_cols=88 Identities=27% Similarity=0.429 Sum_probs=82.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....+.++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcc
Q 012257 114 MYSYRDPT 121 (467)
Q Consensus 114 ~~~~~~~~ 121 (467)
.++.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99876544
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=137.10 Aligned_cols=84 Identities=15% Similarity=0.321 Sum_probs=77.2
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc----ccCC
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT----PLNG 108 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~----~~~g 108 (467)
......+|||+|||+++++++|+++|++|| .|.+|++.+|+.+|+++|||||+|.+.++|++|++.|++. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 445678999999999999999999999999 4779999999999999999999999999999999999886 4899
Q ss_pred ceeeeeeccc
Q 012257 109 KPIRIMYSYR 118 (467)
Q Consensus 109 ~~~~v~~~~~ 118 (467)
+.|+|.++..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999998863
No 48
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=8.1e-20 Score=148.73 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=76.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...++|||+|||+++++++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 012257 115 YSYR 118 (467)
Q Consensus 115 ~~~~ 118 (467)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8753
No 49
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.6e-19 Score=139.66 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=79.5
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
......+.++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34445668999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred eeeec
Q 012257 112 RIMYS 116 (467)
Q Consensus 112 ~v~~~ 116 (467)
+|.++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 99876
No 50
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.6e-19 Score=147.31 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=108.9
Q ss_pred CccccEEEEEecChHHHHHHHHHh-CCcccCCceeeeeecccC--------------cccccCCCccEEEcCCCCcCCHH
Q 012257 78 RRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRIMYSYRD--------------PTIRKSGAGNIFIKNLDKSIDNK 142 (467)
Q Consensus 78 ~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~~~v~~~~~~--------------~~~~~~~~~~l~v~nlp~~~t~~ 142 (467)
..-+|+++|+|.+.++|++|++.+ ++..+.| .+++.++... ........++|||+|||.+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 356799999999999999999999 9999999 9999876542 12233456799999999999999
Q ss_pred HHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEecccccc
Q 012257 143 ALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (467)
Q Consensus 143 ~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~~ 206 (467)
+|+++|+.||.|.++.+..+ ++|||||+|.+.++|..|+..|+|..+.|+.|.|.++..+
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999875 6899999999999999999999999999999999876543
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=133.85 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=79.3
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
......+.++|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 33444568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeec
Q 012257 112 RIMYS 116 (467)
Q Consensus 112 ~v~~~ 116 (467)
+|.++
T Consensus 89 ~v~~a 93 (94)
T 2e5h_A 89 KASIA 93 (94)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99886
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=133.23 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=80.9
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
......++++|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34445668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccc
Q 012257 112 RIMYSYR 118 (467)
Q Consensus 112 ~v~~~~~ 118 (467)
+|.++..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9998753
No 53
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=133.56 Aligned_cols=88 Identities=18% Similarity=0.446 Sum_probs=81.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||.++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 344568999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred eecccCccc
Q 012257 114 MYSYRDPTI 122 (467)
Q Consensus 114 ~~~~~~~~~ 122 (467)
.++......
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 998765443
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=135.67 Aligned_cols=89 Identities=30% Similarity=0.527 Sum_probs=82.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....+.++|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecccCccc
Q 012257 114 MYSYRDPTI 122 (467)
Q Consensus 114 ~~~~~~~~~ 122 (467)
.++......
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 998766443
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=133.74 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=81.8
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..++++|||+|||+++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCccc
Q 012257 116 SYRDPTI 122 (467)
Q Consensus 116 ~~~~~~~ 122 (467)
+......
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 8776543
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7e-19 Score=132.80 Aligned_cols=89 Identities=18% Similarity=0.365 Sum_probs=81.8
Q ss_pred CCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
.......+.++|||+|||+++++++|+++|+.||.|.+|++..++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344555678999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred eeeeecccCc
Q 012257 111 IRIMYSYRDP 120 (467)
Q Consensus 111 ~~v~~~~~~~ 120 (467)
|+|.++...+
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999987553
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=131.33 Aligned_cols=83 Identities=27% Similarity=0.508 Sum_probs=77.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+.++|||+|||.++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccC
Q 012257 117 YRD 119 (467)
Q Consensus 117 ~~~ 119 (467)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=134.37 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=82.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcc
Q 012257 114 MYSYRDPT 121 (467)
Q Consensus 114 ~~~~~~~~ 121 (467)
.++.....
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 59
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=131.59 Aligned_cols=85 Identities=31% Similarity=0.560 Sum_probs=80.4
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.++++|||+|||.++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 012257 117 YRDPT 121 (467)
Q Consensus 117 ~~~~~ 121 (467)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 60
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=8.9e-20 Score=134.68 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=73.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCc--eeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCc----Eecccce
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGT--ITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK----MVVSKPL 392 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~--v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~~l 392 (467)
...+|||+|||+.+|+++|+++|++||. |.+|++++++ +|+++|||||+|.+.++|.+|++.|||. .++|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4558999999999999999999999995 6789999987 6899999999999999999999999997 5899999
Q ss_pred EEehhhh
Q 012257 393 YVALAQR 399 (467)
Q Consensus 393 ~v~~~~~ 399 (467)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=135.72 Aligned_cols=89 Identities=25% Similarity=0.402 Sum_probs=82.6
Q ss_pred CCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
+.+....++++|||+|||+++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 34455567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccC
Q 012257 111 IRIMYSYRD 119 (467)
Q Consensus 111 ~~v~~~~~~ 119 (467)
|+|.++...
T Consensus 95 l~V~~a~~~ 103 (106)
T 1p27_B 95 ISVDWCFVR 103 (106)
T ss_dssp CEEEESEES
T ss_pred EEEEeecCC
Confidence 999998654
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=134.72 Aligned_cols=89 Identities=27% Similarity=0.483 Sum_probs=82.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....+.++|||+|||+++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCccc
Q 012257 114 MYSYRDPTI 122 (467)
Q Consensus 114 ~~~~~~~~~ 122 (467)
.++......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 998765443
No 63
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.3e-19 Score=130.32 Aligned_cols=81 Identities=28% Similarity=0.518 Sum_probs=77.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+.++|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c
Q 012257 116 S 116 (467)
Q Consensus 116 ~ 116 (467)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=8.6e-19 Score=136.02 Aligned_cols=91 Identities=25% Similarity=0.490 Sum_probs=83.4
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
......+.++|||+|||+++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 33444568999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred eeeecccCccc
Q 012257 112 RIMYSYRDPTI 122 (467)
Q Consensus 112 ~v~~~~~~~~~ 122 (467)
+|.++......
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99998766543
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=134.09 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=81.8
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
+....++++|||+|||+++++++|+++|+.||.|.+|.+..++.+++++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 33445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCc
Q 012257 113 IMYSYRDP 120 (467)
Q Consensus 113 v~~~~~~~ 120 (467)
|.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99987554
No 66
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=3.1e-19 Score=138.06 Aligned_cols=108 Identities=62% Similarity=1.005 Sum_probs=74.2
Q ss_pred CCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcCCccCCeeeEeccccc
Q 012257 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (467)
Q Consensus 126 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~~~~~g~~~~v~~~~~ 205 (467)
+.++|||+|||.++++++|+++|+.||.|.+|++..+.. .++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 356899999999999999999999999999999998853 4799999999999999999999999999999999988766
Q ss_pred ccccccc--cccccccceeecCCCccCCHHH
Q 012257 206 KQEREST--ADKTRFNNVYVKNLSETTTEDD 234 (467)
Q Consensus 206 ~~~~~~~--~~~~~~~~l~v~nlp~~~~~~~ 234 (467)
+...... ......+++||+|||+.+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 5443322 2233456899999999988753
No 67
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=4e-20 Score=136.34 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=73.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCC-ceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhC-CcEecccceEEehhh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMN-GKMVVSKPLYVALAQ 398 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~~~~ 398 (467)
.+|||+|||..+|+++|+++|++|| .|.+|+++++. +|.++|||||+|.+.++|.+|++.++ +..++|++|+|+|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 4799999999999999999999999 89999999886 68999999999999999999999875 567999999999997
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 68
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.7e-19 Score=128.41 Aligned_cols=81 Identities=33% Similarity=0.625 Sum_probs=77.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeeccc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 118 (467)
+.+|||+|||.++++++|+++|+.||.|.++.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 012257 119 D 119 (467)
Q Consensus 119 ~ 119 (467)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=133.13 Aligned_cols=84 Identities=29% Similarity=0.551 Sum_probs=79.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..++++|||+|||.++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8654
No 70
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4.7e-19 Score=132.57 Aligned_cols=84 Identities=24% Similarity=0.441 Sum_probs=79.6
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
++++|||+|||.++++++|+++|++||.|.+|++.+++.+|+++|||||+|.+.++|++|++.+++..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cCcc
Q 012257 118 RDPT 121 (467)
Q Consensus 118 ~~~~ 121 (467)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 6543
No 71
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.9e-19 Score=133.88 Aligned_cols=91 Identities=20% Similarity=0.463 Sum_probs=83.1
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEec-CCCCccccEEEEEecChHHHHHHHHHh-CCcccCCc
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGK 109 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~ 109 (467)
......++++|||+|||+++++++|+++|+.||.|.+|.+.++ +.+++++|||||+|.+.++|++|++.| ++..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3444567899999999999999999999999999999999999 788999999999999999999999999 99999999
Q ss_pred eeeeeecccCccc
Q 012257 110 PIRIMYSYRDPTI 122 (467)
Q Consensus 110 ~~~v~~~~~~~~~ 122 (467)
.|+|.++......
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999998766543
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=4.5e-19 Score=139.69 Aligned_cols=88 Identities=26% Similarity=0.423 Sum_probs=81.9
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
......++++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.|++..|.|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccC
Q 012257 112 RIMYSYRD 119 (467)
Q Consensus 112 ~v~~~~~~ 119 (467)
+|.++..+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998654
No 73
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=3.5e-19 Score=138.24 Aligned_cols=104 Identities=21% Similarity=0.415 Sum_probs=93.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.++++|||+|||+++++++|+++|+.||.|.+|.+.++. .++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 457999999999999999999999999999999998654 45899999999999999999999999999999999998
Q ss_pred ccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCC
Q 012257 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153 (467)
Q Consensus 117 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~ 153 (467)
...... .+++...++++|.++|++||-
T Consensus 83 ~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 654332 567788899999999999984
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=1.2e-18 Score=135.23 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=82.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....+.++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33446799999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecccCccc
Q 012257 114 MYSYRDPTI 122 (467)
Q Consensus 114 ~~~~~~~~~ 122 (467)
.++......
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 998766443
No 75
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=134.59 Aligned_cols=88 Identities=26% Similarity=0.434 Sum_probs=81.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...+.++|||+|||+++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCccc
Q 012257 115 YSYRDPTI 122 (467)
Q Consensus 115 ~~~~~~~~ 122 (467)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 98765443
No 76
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.2e-19 Score=125.14 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=71.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
.+..|+|+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.|||..++|+.|+|++|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 455799999999999999999999999999999976 589999999999999999999999999999999999964
Q ss_pred hH
Q 012257 400 KE 401 (467)
Q Consensus 400 ~~ 401 (467)
..
T Consensus 81 ~~ 82 (89)
T 2wbr_A 81 NE 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 77
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=132.00 Aligned_cols=90 Identities=28% Similarity=0.489 Sum_probs=81.8
Q ss_pred CCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
.+.....+.++|||+|||+++++++|+++|+.||.|.+|.+..+ ++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34445557899999999999999999999999999999999998 8899999999999999999999999999999999
Q ss_pred eeeeecccCccc
Q 012257 111 IRIMYSYRDPTI 122 (467)
Q Consensus 111 ~~v~~~~~~~~~ 122 (467)
|+|.++......
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2d9p_A 85 LYVALAQRKEER 96 (103)
T ss_dssp CEEEECSSCCCC
T ss_pred EEEEEecccccC
Confidence 999998765443
No 78
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=9.5e-19 Score=131.72 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=76.8
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 108 (467)
.+.++|||+|||.++++++|+++|++||.|.+ |++..++.+|+++|||||+|.+.++|++|++.|++..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45799999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ceeeeeec
Q 012257 109 KPIRIMYS 116 (467)
Q Consensus 109 ~~~~v~~~ 116 (467)
+.|+|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999876
No 79
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=133.24 Aligned_cols=91 Identities=24% Similarity=0.370 Sum_probs=82.9
Q ss_pred CCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
.......+.++|||+|||+++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++. ++..|.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 3444556789999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred eeeeecccCccc
Q 012257 111 IRIMYSYRDPTI 122 (467)
Q Consensus 111 ~~v~~~~~~~~~ 122 (467)
|+|.++......
T Consensus 87 l~V~~a~~~~~~ 98 (105)
T 2dh8_A 87 IDPKPCTPRGMQ 98 (105)
T ss_dssp EBCCCSCCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999998765443
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=7.3e-19 Score=131.41 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=77.4
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
+....+.++|||+|||+++++++|+++|+.||.|.+|++.+++. ++++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34455689999999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred eeecc
Q 012257 113 IMYSY 117 (467)
Q Consensus 113 v~~~~ 117 (467)
|.++.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 98875
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=132.75 Aligned_cols=85 Identities=20% Similarity=0.329 Sum_probs=78.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...++|||+|||..+|+++|+++|++||.|.+|+++.+..|.++|||||+|.+.++|.+|+. ++|..++|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34568999999999999999999999999999999999889999999999999999999999 89999999999999988
Q ss_pred hhHHHH
Q 012257 399 RKEERR 404 (467)
Q Consensus 399 ~~~~~~ 404 (467)
.....+
T Consensus 88 ~~~~~k 93 (103)
T 1s79_A 88 DYFAKK 93 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 82
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=129.35 Aligned_cols=81 Identities=28% Similarity=0.547 Sum_probs=75.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
+.++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56689999999999999999999999999999999985 88899999999999999999999999999999999999997
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 83
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=6.1e-19 Score=135.67 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=83.3
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
...+....++++|||+|||+++++++|+++|+.||.|.+|.+..++.+|+++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 34455567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccCc
Q 012257 110 PIRIMYSYRDP 120 (467)
Q Consensus 110 ~~~v~~~~~~~ 120 (467)
.|+|.++....
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 99999986543
No 84
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=133.40 Aligned_cols=88 Identities=16% Similarity=0.321 Sum_probs=81.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhC------CcccC
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN------FTPLN 107 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~~~~~ 107 (467)
....++++|||+|||+++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|.+|++.++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344568999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CceeeeeecccCcc
Q 012257 108 GKPIRIMYSYRDPT 121 (467)
Q Consensus 108 g~~~~v~~~~~~~~ 121 (467)
|+.|+|.++.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999876544
No 85
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=8.1e-19 Score=127.58 Aligned_cols=79 Identities=34% Similarity=0.640 Sum_probs=75.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
.+|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999999885 7889999999999999999999999999999999999999864
No 86
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.8e-19 Score=132.86 Aligned_cols=84 Identities=21% Similarity=0.443 Sum_probs=79.2
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++++
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9765
No 87
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=131.49 Aligned_cols=86 Identities=23% Similarity=0.488 Sum_probs=79.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---CCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
+.++++|||+|||+++++++|+++|+.||.|.+|.+.+++. +++++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35689999999999999999999999999999999999876 668999999999999999999999999999999999
Q ss_pred eeecccCcc
Q 012257 113 IMYSYRDPT 121 (467)
Q Consensus 113 v~~~~~~~~ 121 (467)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999876544
No 88
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=2.7e-19 Score=132.02 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=71.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCC--ceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
.+|||+|||..+++++|+++|++|| .|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3699999999999999999999999 99999999986 88999999999999999999999999999999999999998
Q ss_pred hhH
Q 012257 399 RKE 401 (467)
Q Consensus 399 ~~~ 401 (467)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 89
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=134.28 Aligned_cols=90 Identities=26% Similarity=0.418 Sum_probs=82.3
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
........+.++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.+++ .|.|+
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 34455566789999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred eeeeeecccCc
Q 012257 110 PIRIMYSYRDP 120 (467)
Q Consensus 110 ~~~v~~~~~~~ 120 (467)
.|+|.++....
T Consensus 87 ~l~V~~a~~~~ 97 (116)
T 2cqd_A 87 KANVNLAYLGA 97 (116)
T ss_dssp ECEEEESTTTC
T ss_pred EEEEEEcccCC
Confidence 99999986543
No 90
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=3.2e-18 Score=130.50 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=79.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC---ceee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG---KPIR 112 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~~~ 112 (467)
..++++|||+|||+++++++|+++|+.||.|.+|.+.+++ +++++|||||+|.+.++|++|++.|++..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3458999999999999999999999999999999999997 79999999999999999999999999999988 9999
Q ss_pred eeecccCccc
Q 012257 113 IMYSYRDPTI 122 (467)
Q Consensus 113 v~~~~~~~~~ 122 (467)
|.++......
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9998766543
No 91
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=132.01 Aligned_cols=85 Identities=26% Similarity=0.604 Sum_probs=80.2
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
.++++|||+|||+++++++|+++|+.||.|.+| ++.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccCcc
Q 012257 116 SYRDPT 121 (467)
Q Consensus 116 ~~~~~~ 121 (467)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 876544
No 92
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=6.6e-19 Score=128.70 Aligned_cols=80 Identities=33% Similarity=0.481 Sum_probs=75.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeC-CCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
.+.++|||+|||..+++++|+++|++||.|.+++++.+ .++.++|+|||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46679999999999999999999999999999999888 47889999999999999999999999999999999999997
Q ss_pred h
Q 012257 398 Q 398 (467)
Q Consensus 398 ~ 398 (467)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 93
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=8.3e-19 Score=131.11 Aligned_cols=82 Identities=27% Similarity=0.473 Sum_probs=77.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|++||.|.+|++..+.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred hh
Q 012257 398 QR 399 (467)
Q Consensus 398 ~~ 399 (467)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=5.3e-19 Score=146.44 Aligned_cols=141 Identities=19% Similarity=0.330 Sum_probs=79.4
Q ss_pred EEeCCHHHHHHHHHHhCCCccC--CceEEEcccccchHHHHHhhh--hhhhhhhccccCCCCceEEEecCCCCCCHHHHH
Q 012257 264 VNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELKG--KFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339 (467)
Q Consensus 264 v~f~~~~~a~~a~~~l~~~~~~--~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~ 339 (467)
.+|.+.+++..++..+++.... |+.....+............. ...............++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788888888888888776554 333333332211100000000 000011122334567789999999999999999
Q ss_pred HhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhHHHH
Q 012257 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404 (467)
Q Consensus 340 ~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 404 (467)
++|++||.|..|+|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+.....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999985 88899999999999999999999999999999999999998665443
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.4e-18 Score=130.58 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=80.4
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
......+.++|||+|||+++++++|+++|+.|| |.+|++.+++.+++++|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 334455689999999999999999999999997 999999999999999999999999999999999 799999999999
Q ss_pred eeeecccCcc
Q 012257 112 RIMYSYRDPT 121 (467)
Q Consensus 112 ~v~~~~~~~~ 121 (467)
+|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999876544
No 96
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=2.6e-19 Score=132.02 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=72.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
.+|||+|||+++++++|+++|+.|| .|.++++..++.+|+++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred cCc
Q 012257 118 RDP 120 (467)
Q Consensus 118 ~~~ 120 (467)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 553
No 97
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=4.6e-19 Score=154.25 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=78.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCC--ceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..++|||+||+..+++++|+++|++|| .|++|+|+.+. +|+++|||||+|.+.++|.+||+.|||..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 99999999996 899999999999999999999999999999999999999
Q ss_pred hhhhHHHHH
Q 012257 397 AQRKEERRA 405 (467)
Q Consensus 397 ~~~~~~~~~ 405 (467)
+++......
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 987765443
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.7e-18 Score=126.96 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=75.3
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...+.++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|.+|++ +++..+.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999997 57788999999997
Q ss_pred ec
Q 012257 115 YS 116 (467)
Q Consensus 115 ~~ 116 (467)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 99
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.9e-18 Score=121.74 Aligned_cols=74 Identities=24% Similarity=0.256 Sum_probs=69.3
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
..+..|+|+||++.++|++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4588999999999999999999999999999999965 5699999999999999999999999999999999755
No 100
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=4.1e-19 Score=133.62 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=77.8
Q ss_pred CCceEEEecCCC------CCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecc-cc
Q 012257 320 EGLNLYVKNLDD------SISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KP 391 (467)
Q Consensus 320 ~~~~l~V~nlp~------~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~ 391 (467)
..++|||+|||. .+++++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999987 49999999999999999999999999999999 99
Q ss_pred eEEehhhhhHH
Q 012257 392 LYVALAQRKEE 402 (467)
Q Consensus 392 l~v~~~~~~~~ 402 (467)
|+|+++.+...
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987654
No 101
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=131.46 Aligned_cols=85 Identities=27% Similarity=0.494 Sum_probs=79.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce---
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP--- 110 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~--- 110 (467)
...++++|||+|||+++++++|+++|++||.|. +|++.+++.+++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -eeeeecccC
Q 012257 111 -IRIMYSYRD 119 (467)
Q Consensus 111 -~~v~~~~~~ 119 (467)
|+|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999888644
No 102
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=129.71 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=72.2
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcE--ecccceE
Q 012257 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM--VVSKPLY 393 (467)
Q Consensus 316 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l~ 393 (467)
....++++|||+|||+.+++++|+++|++||.|.+|++++. +|+|||+|.+.++|.+|++.|++.. +.|++|+
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 34457789999999999999999999999999999999863 7899999999999999999999885 7899999
Q ss_pred Eehhhhh
Q 012257 394 VALAQRK 400 (467)
Q Consensus 394 v~~~~~~ 400 (467)
|+|++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999764
No 103
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-19 Score=134.24 Aligned_cols=88 Identities=28% Similarity=0.506 Sum_probs=81.7
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
+....++++|||+|||+++++++|+++|+.||.|.+|.+.+++.+|+++|||||+|.+.++|++|++.+++..+.|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCc
Q 012257 113 IMYSYRDP 120 (467)
Q Consensus 113 v~~~~~~~ 120 (467)
|.++....
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99987543
No 104
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=131.04 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+.++|||+|||+++++++|+++|+.||+|.+|.+.+++. |+++|||||+|.+.++|.+|++ +++..+.|+.|+|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999987 9999999999999999999998 899999999999988
Q ss_pred ccc
Q 012257 116 SYR 118 (467)
Q Consensus 116 ~~~ 118 (467)
...
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 105
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=129.47 Aligned_cols=87 Identities=22% Similarity=0.403 Sum_probs=78.6
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....+.++|||+|||+++++++|+++|+.||.|.+|++.+++.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34456899999999999999999999999999999999998543 6899999999999999999999999999999999
Q ss_pred eecccCccc
Q 012257 114 MYSYRDPTI 122 (467)
Q Consensus 114 ~~~~~~~~~ 122 (467)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 998765443
No 106
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.6e-18 Score=132.48 Aligned_cols=87 Identities=18% Similarity=0.375 Sum_probs=80.5
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc---CCcee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL---NGKPI 111 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~~ 111 (467)
...+.++|||+|||.++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|.+|++.|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345689999999999999999999999999999999999999999999999999999999999999999887 89999
Q ss_pred eeeecccCcc
Q 012257 112 RIMYSYRDPT 121 (467)
Q Consensus 112 ~v~~~~~~~~ 121 (467)
+|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999876543
No 107
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=130.96 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=80.2
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC-CccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
+....+.++|||+|||+++++++|+++|+.|| |.+|.+.+++.+ ++++|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34445679999999999999999999999999 999999999887 999999999999999999999 899999999999
Q ss_pred eeeecccCccc
Q 012257 112 RIMYSYRDPTI 122 (467)
Q Consensus 112 ~v~~~~~~~~~ 122 (467)
+|.++......
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99998765443
No 108
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=129.21 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=72.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCC--cccCCceeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKPIRIM 114 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~~~v~ 114 (467)
.++++|||+|||++++|++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.+++ ..+.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45899999999999999999999999999999999876 47999999999999999998863 68999999999
Q ss_pred ecccCcccc
Q 012257 115 YSYRDPTIR 123 (467)
Q Consensus 115 ~~~~~~~~~ 123 (467)
++...+...
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 987665443
No 109
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.1e-18 Score=130.45 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=77.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
+++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5689999999999999999999999999999999986 688999999999999999999999999999999999999986
Q ss_pred hHH
Q 012257 400 KEE 402 (467)
Q Consensus 400 ~~~ 402 (467)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 110
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=131.17 Aligned_cols=78 Identities=15% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCC--cEecccceEEe
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYVA 395 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~ 395 (467)
..+.++|||+|||+.+++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++ ..+.|+.|+|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 346678999999999999999999999999999999875 78999999999999999998864 78999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++.+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 99755
No 111
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=138.66 Aligned_cols=87 Identities=17% Similarity=0.323 Sum_probs=80.0
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc----c
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT----P 105 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~----~ 105 (467)
.+.....+++|||+|||++++|++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3344466899999999999999999999999999977 99999999999999999999999 999999999999 9
Q ss_pred cCCceeeeeecccC
Q 012257 106 LNGKPIRIMYSYRD 119 (467)
Q Consensus 106 ~~g~~~~v~~~~~~ 119 (467)
+.|+.|+|.++...
T Consensus 95 ~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 95 IDGKTINVEFAKGS 108 (131)
T ss_dssp GGGCCCCCEECCCS
T ss_pred CCCEEEEEEECCCC
Confidence 99999999998654
No 112
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-19 Score=129.02 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=77.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.++++|||+|||+++++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|++|++.|++..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred c
Q 012257 117 Y 117 (467)
Q Consensus 117 ~ 117 (467)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=131.93 Aligned_cols=83 Identities=64% Similarity=1.010 Sum_probs=78.5
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+ ++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4457789999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++++
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 9865
No 114
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=1.9e-19 Score=143.21 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=78.9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCceEEEcccccchHHHHHhhhhhhhhhhccccCCCCceEEEecCCCCCCHHHHHH
Q 012257 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340 (467)
Q Consensus 261 ~afv~f~~~~~a~~a~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~ 340 (467)
++|++|++...+..|+..+++....++... .+.. ........++|||+|||..+++++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~~~------------------~~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SYGR------------------PPPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -----------------------------C-CSCC------------------SCSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-CcCC------------------CCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 678888899999999998887665443211 1111 112234567899999999999999999
Q ss_pred hhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 341 LFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 341 ~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
+|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|+|+++.
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999886 7889999999999999999999999999999999999999754
No 115
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-18 Score=128.25 Aligned_cols=88 Identities=22% Similarity=0.410 Sum_probs=79.1
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.....+.++|||+|||+++++++|+++|+.||.|.+|++.+++. .++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455689999999999999999999999999999999998864 3889999999999999999999999999999999
Q ss_pred eeecccCccc
Q 012257 113 IMYSYRDPTI 122 (467)
Q Consensus 113 v~~~~~~~~~ 122 (467)
|.++......
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9998766443
No 116
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=1.7e-18 Score=131.99 Aligned_cols=84 Identities=32% Similarity=0.589 Sum_probs=78.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecc---cceEE
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS---KPLYV 394 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 394 (467)
....++|||+|||..+++++|+++|++||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred ehhhhhH
Q 012257 395 ALAQRKE 401 (467)
Q Consensus 395 ~~~~~~~ 401 (467)
.|+++..
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9998653
No 117
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=132.72 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=79.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..++++|||+|||.++++++|+++|+.||.|.+|.+..++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCc
Q 012257 116 SYRDP 120 (467)
Q Consensus 116 ~~~~~ 120 (467)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87554
No 118
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=131.08 Aligned_cols=84 Identities=29% Similarity=0.428 Sum_probs=78.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..+.++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3466799999999999999999999999999999999987 888999999999999999999999999999999999999
Q ss_pred hhhhH
Q 012257 397 AQRKE 401 (467)
Q Consensus 397 ~~~~~ 401 (467)
++++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98663
No 119
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=4.3e-18 Score=126.36 Aligned_cols=83 Identities=23% Similarity=0.335 Sum_probs=77.2
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+.++|||+|||.++++++|+++|++||.|.+|++.++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999999984 788999999999999999999999999999999999999
Q ss_pred cccCc
Q 012257 116 SYRDP 120 (467)
Q Consensus 116 ~~~~~ 120 (467)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87554
No 120
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=129.09 Aligned_cols=82 Identities=34% Similarity=0.609 Sum_probs=77.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
...++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356789999999999999999999999999999999986 5889999999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+++
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 754
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=8e-19 Score=132.01 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=77.9
Q ss_pred ccCeEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC-ce
Q 012257 38 VSTSLYVGDLDL------SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG-KP 110 (467)
Q Consensus 38 ~~~~l~v~nLp~------~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~ 110 (467)
.+++|||+|||. ++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.|++..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eeeeecccC
Q 012257 111 IRIMYSYRD 119 (467)
Q Consensus 111 ~~v~~~~~~ 119 (467)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999987643
No 122
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=129.37 Aligned_cols=81 Identities=23% Similarity=0.452 Sum_probs=76.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4566789999999999999999999999999999999987 588899999999999999999999999999999999999
Q ss_pred hh
Q 012257 397 AQ 398 (467)
Q Consensus 397 ~~ 398 (467)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 123
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=129.18 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=77.2
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
...+.++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34466789999999999999999999999999999999987 57899999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 396 LAQR 399 (467)
Q Consensus 396 ~~~~ 399 (467)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 124
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=131.07 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=78.3
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
....++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7643
No 125
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-18 Score=129.16 Aligned_cols=89 Identities=15% Similarity=0.299 Sum_probs=78.5
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
........+.++|||+|||+++++++|+++|++||.|.+|.+..+ ++++|||||+|.+.++|++|++.|++..+.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 344455567899999999999999999999999999999999654 45789999999999999999999999999999
Q ss_pred eeeeeecccCcc
Q 012257 110 PIRIMYSYRDPT 121 (467)
Q Consensus 110 ~~~v~~~~~~~~ 121 (467)
.|+|.++.....
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 999999876543
No 126
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=131.05 Aligned_cols=84 Identities=27% Similarity=0.441 Sum_probs=78.8
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
...+.++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99755
No 127
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.7e-18 Score=130.46 Aligned_cols=82 Identities=34% Similarity=0.582 Sum_probs=77.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|++||.|.+|++..+.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 012257 398 QR 399 (467)
Q Consensus 398 ~~ 399 (467)
+.
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 128
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=139.38 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=78.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCC--ceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..++|||+|||..+++++|+++|+.|| .|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 456899999999999999999999999 99999999986 799999999999999999999999999999999999999
Q ss_pred hhhhHHHH
Q 012257 397 AQRKEERR 404 (467)
Q Consensus 397 ~~~~~~~~ 404 (467)
+.++....
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98766544
No 129
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=1.9e-18 Score=133.98 Aligned_cols=84 Identities=33% Similarity=0.531 Sum_probs=78.7
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466799999999999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 101 ~a~~~ 105 (115)
T 2cpz_A 101 LKRSK 105 (115)
T ss_dssp CCCCS
T ss_pred EcCCC
Confidence 99765
No 130
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=129.44 Aligned_cols=85 Identities=33% Similarity=0.481 Sum_probs=79.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc-cCCceeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNGKPIRI 113 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~~~v 113 (467)
..++++|||+|||+++++++|+++|+. ||.|.+|.+.+++ +++++|||||+|.+.++|.+|++.|++.. +.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456799999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred eecccCcc
Q 012257 114 MYSYRDPT 121 (467)
Q Consensus 114 ~~~~~~~~ 121 (467)
.++.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99865543
No 131
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=133.55 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=79.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCc---eeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
...++|||+|||+.+++++|+++|+.||. |.+|+++.+.+|+++|||||+|.+.++|.+|++ +||..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred hhhhhHHHHH
Q 012257 396 LAQRKEERRA 405 (467)
Q Consensus 396 ~~~~~~~~~~ 405 (467)
++........
T Consensus 94 ~a~~~~~~~~ 103 (118)
T 2db1_A 94 KSHRTEMDWV 103 (118)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9987665433
No 132
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=133.71 Aligned_cols=82 Identities=27% Similarity=0.474 Sum_probs=77.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...++|||+|||..+++++|+++|++||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
+.
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 133
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=126.52 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc--cCCc
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP--LNGK 109 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~--~~g~ 109 (467)
+.....++++|||+|||.++++++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|++.+++.. +.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 3445567899999999999999999999999999999999853 4799999999999999999998765 7899
Q ss_pred eeeeeecccC
Q 012257 110 PIRIMYSYRD 119 (467)
Q Consensus 110 ~~~v~~~~~~ 119 (467)
+|+|.++...
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999998754
No 134
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=133.40 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=81.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCce-eEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTI-TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v-~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||+.+++++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456789999999999999999999999999 899999999999999999999999999999987 99999999999999
Q ss_pred hhhhHHHHHHH
Q 012257 397 AQRKEERRARL 407 (467)
Q Consensus 397 ~~~~~~~~~~~ 407 (467)
+.+........
T Consensus 91 a~~~~~~~~~~ 101 (114)
T 2cpy_A 91 VTLEDMREIEK 101 (114)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 99887665543
No 135
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=132.16 Aligned_cols=87 Identities=23% Similarity=0.362 Sum_probs=81.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 106 (467)
...++++|||+|||+++++++|+++|++||.|. .|++..++.+++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445689999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCceeeeeecccCcc
Q 012257 107 NGKPIRIMYSYRDPT 121 (467)
Q Consensus 107 ~g~~~~v~~~~~~~~ 121 (467)
.|+.|+|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999876544
No 136
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=9.8e-19 Score=131.68 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=74.3
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecC-CCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL-STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
...++|||+|||.++++++|+++|+.|| |.+|.+.+++ .+|+++|||||+|.+.++|.+|+ .+++..+.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3579999999999999999999999999 9999999998 58999999999999999999999 7999999999999998
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8654
No 137
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=131.40 Aligned_cols=84 Identities=24% Similarity=0.492 Sum_probs=78.2
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
....+++|||+|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34466789999999999999999999999999999999986 58899999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99764
No 138
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=126.69 Aligned_cols=83 Identities=20% Similarity=0.406 Sum_probs=77.4
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCc-cccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+++|||+|||.++++++|+++|+.||.|.+|.+..+..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999987766 899999999999999999999999999999999998
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7543
No 139
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.4e-18 Score=126.90 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=77.1
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
+.++|||+|||+++++++|+++|+.||.|.+|.+..++.+++++|||||+|.+.++|++|+ .+++..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 5789999999999999999999999999999999999989999999999999999999999 899999999999999886
Q ss_pred cC
Q 012257 118 RD 119 (467)
Q Consensus 118 ~~ 119 (467)
.+
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 140
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=128.94 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=74.4
Q ss_pred CCCCCCCccCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc--ccC
Q 012257 31 VGDARQFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLN 107 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~ 107 (467)
+......++++|||+|||+ +++|++|+++|++||.|.+|+|++++ |||||+|.+.++|.+|++.|++. .+.
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 7 GQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3444556799999999999 99999999999999999999998764 69999999999999999988754 599
Q ss_pred CceeeeeecccCcc
Q 012257 108 GKPIRIMYSYRDPT 121 (467)
Q Consensus 108 g~~~~v~~~~~~~~ 121 (467)
|++|+|.++.....
T Consensus 81 Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 81 GKPVRVHLSQKYKR 94 (102)
T ss_dssp TEECEEEEECCCTT
T ss_pred CcEEEEEECCCCCC
Confidence 99999999875543
No 141
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=128.72 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=76.7
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeE--------EEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV 387 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 387 (467)
.....++|||+|||..+++++|+++|++||.|.+ +++..+. +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456779999999999999999999999999999 9999985 789999999999999999999999999999
Q ss_pred cccceEEehhh
Q 012257 388 VSKPLYVALAQ 398 (467)
Q Consensus 388 ~g~~l~v~~~~ 398 (467)
.|+.|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 142
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=131.35 Aligned_cols=84 Identities=36% Similarity=0.609 Sum_probs=78.2
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567799999999999999999999999999999999885 68899999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
+++++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99764
No 143
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.8e-18 Score=130.55 Aligned_cols=84 Identities=30% Similarity=0.490 Sum_probs=78.3
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
+....++++|||+|||+++++++|+++|+.||.|.+|++..++ +++++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445668999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred eeecc
Q 012257 113 IMYSY 117 (467)
Q Consensus 113 v~~~~ 117 (467)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98864
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=131.41 Aligned_cols=84 Identities=24% Similarity=0.414 Sum_probs=76.0
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+.++|||+|||.++++++|+++|+.||.|.+|.+.+++.+|+++|||||+|.+.++|.+|++.+ +..+.|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 45799999999999999999999999999999999999999999999999999999999999975 58899999999998
Q ss_pred ccCcc
Q 012257 117 YRDPT 121 (467)
Q Consensus 117 ~~~~~ 121 (467)
.....
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 75543
No 145
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=131.10 Aligned_cols=84 Identities=30% Similarity=0.483 Sum_probs=78.9
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567799999999999999999999999999999999987 78899999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
++++.
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 99865
No 146
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.7e-18 Score=130.63 Aligned_cols=82 Identities=35% Similarity=0.513 Sum_probs=77.7
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q 012257 397 AQ 398 (467)
Q Consensus 397 ~~ 398 (467)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 147
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=129.05 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=76.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++ ||+..++|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567799999999999999999999999999999999986 68899999999999999999998 999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++++
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9755
No 148
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=3.2e-18 Score=135.17 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=83.5
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
.+.+....++++|||+|||+++++++|+++|+.||.|.+|.+..++.++.++|||||+|.+.++|++|++.|++..|.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 33455566789999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred eeeeeecccCcc
Q 012257 110 PIRIMYSYRDPT 121 (467)
Q Consensus 110 ~~~v~~~~~~~~ 121 (467)
.|+|.++.....
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999875543
No 149
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=127.06 Aligned_cols=88 Identities=19% Similarity=0.332 Sum_probs=79.5
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.....+.++|||+|||+++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|++|++ ++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3444568999999999999999999999999999999999999999999999999999999999998 46789999999
Q ss_pred eeecccCccc
Q 012257 113 IMYSYRDPTI 122 (467)
Q Consensus 113 v~~~~~~~~~ 122 (467)
|.++......
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9998765443
No 150
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=132.25 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=78.3
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
...+++|||+|||.++++++|+++|+.||.|.+|.+..++.+++++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 346799999999999999999999999999999999999999999999999999999999999 8999999999999998
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 7644
No 151
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=132.01 Aligned_cols=87 Identities=25% Similarity=0.483 Sum_probs=80.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34589999999999999999999999999999999885 78899999999999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 012257 399 RKEERRAR 406 (467)
Q Consensus 399 ~~~~~~~~ 406 (467)
+.......
T Consensus 87 ~~~~~~~~ 94 (104)
T 1p1t_A 87 SEKNKEEL 94 (104)
T ss_dssp CTTHHHHH
T ss_pred Cccchhhh
Confidence 87665543
No 152
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.1e-18 Score=125.30 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=74.3
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh--CCcccCCc
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL--NFTPLNGK 109 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~ 109 (467)
+.....++++|||+|||++++|++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.+ ++..+.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 3455567899999999999999999999999999999999865 479999999999999999976 46679999
Q ss_pred eeeeeecccCccc
Q 012257 110 PIRIMYSYRDPTI 122 (467)
Q Consensus 110 ~~~v~~~~~~~~~ 122 (467)
.|+|.++......
T Consensus 82 ~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 PIYIQYSNHKELK 94 (101)
T ss_dssp ECEEEECSCSSCC
T ss_pred EEEEEEcCcccCc
Confidence 9999998765443
No 153
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=129.15 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=77.1
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+..+ ++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++++
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 9765
No 154
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=129.85 Aligned_cols=82 Identities=33% Similarity=0.614 Sum_probs=77.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEE-EEeeC-CCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v-~i~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.+.++|||+|||..+++++|+++|++||.|.++ +++.+ .++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356789999999999999999999999999999 99998 5888999999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9755
No 155
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=132.41 Aligned_cols=88 Identities=19% Similarity=0.405 Sum_probs=80.5
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....+.++|||+|||+++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|++|++. ++..|.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3344579999999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred eecccCccc
Q 012257 114 MYSYRDPTI 122 (467)
Q Consensus 114 ~~~~~~~~~ 122 (467)
.++......
T Consensus 101 ~~a~~~~~~ 109 (116)
T 1x4b_A 101 KRAVAREES 109 (116)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCccC
Confidence 998766543
No 156
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=3.5e-18 Score=132.54 Aligned_cols=84 Identities=30% Similarity=0.568 Sum_probs=78.9
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 99765
No 157
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=136.86 Aligned_cols=87 Identities=28% Similarity=0.498 Sum_probs=79.9
Q ss_pred CCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 30 GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 30 ~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
........+.++|||+|||.++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.|++..+.|+
T Consensus 54 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 54 GGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33445556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeec
Q 012257 110 PIRIMYS 116 (467)
Q Consensus 110 ~~~v~~~ 116 (467)
.|+|.++
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999864
No 158
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=128.51 Aligned_cols=84 Identities=11% Similarity=0.228 Sum_probs=76.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
......++|||+|||++++|++|+++|+.||.+ +|+|+.++ +++++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 445567999999999999999999999999965 99999998 89999999999999999999996 7999999999999
Q ss_pred eecccCc
Q 012257 114 MYSYRDP 120 (467)
Q Consensus 114 ~~~~~~~ 120 (467)
.++...+
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 8876543
No 159
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=129.37 Aligned_cols=85 Identities=25% Similarity=0.391 Sum_probs=78.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||+++++++|+++|+.||.|.+|++.+++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344568999999999999999999999999999999999997 5899999999999999999999999999999999999
Q ss_pred eecccC
Q 012257 114 MYSYRD 119 (467)
Q Consensus 114 ~~~~~~ 119 (467)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 997643
No 160
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=126.77 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=73.7
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc--ccCCc
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGK 109 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~ 109 (467)
+.....++++|||+|||++++|++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.+++. .+.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3444567899999999999999999999999999999999864 479999999999999999988654 58999
Q ss_pred eeeeeecccCccc
Q 012257 110 PIRIMYSYRDPTI 122 (467)
Q Consensus 110 ~~~v~~~~~~~~~ 122 (467)
.|+|.++......
T Consensus 82 ~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 QAFFNYSTSKRIT 94 (104)
T ss_dssp BCEEEECSSSSCC
T ss_pred EEEEEEccCcccc
Confidence 9999998765443
No 161
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=127.64 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=75.8
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
..+.++|||+|||+++++++|+++|+.||.|.+ |.|..+ .+++++|||||+|.+.++|++|++. ++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 355799999999999999999999999999987 888888 7899999999999999999999996 9999999999998
Q ss_pred ecccCc
Q 012257 115 YSYRDP 120 (467)
Q Consensus 115 ~~~~~~ 120 (467)
++...+
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 876543
No 162
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.4e-18 Score=129.90 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=75.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999998764
No 163
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=131.20 Aligned_cols=84 Identities=26% Similarity=0.485 Sum_probs=78.4
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC--CCCccceEEEEcCCHHHHHHHHHHh-CCcEecccceE
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEM-NGKMVVSKPLY 393 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~ 393 (467)
.....++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.| ||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 44567899999999999999999999999999999999884 8889999999999999999999999 99999999999
Q ss_pred Eehhhhh
Q 012257 394 VALAQRK 400 (467)
Q Consensus 394 v~~~~~~ 400 (467)
|+|+++.
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9999765
No 164
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=128.58 Aligned_cols=81 Identities=37% Similarity=0.658 Sum_probs=75.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC--C--CccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--G--ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~--~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
+.++|||+|||..+++++|+++|++||.|.+|++..+.. | .++|||||+|.+.++|.+|++.|||..+.|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999998764 4 789999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
++++.
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 99765
No 165
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=130.54 Aligned_cols=92 Identities=22% Similarity=0.398 Sum_probs=80.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
++|||+|||+++++++|+++|++||.|.+|.+.++ ++|||||+|.+.++|++|++.|++..+.|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 5689999999999999999999999999999999998765
Q ss_pred cccc--------cCCCccEEEcCCC
Q 012257 120 PTIR--------KSGAGNIFIKNLD 136 (467)
Q Consensus 120 ~~~~--------~~~~~~l~v~nlp 136 (467)
+... .....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4221 1225679999986
No 166
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=130.34 Aligned_cols=83 Identities=34% Similarity=0.537 Sum_probs=78.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcc-CCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcE-ecccceEEe
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSE-FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM-VVSKPLYVA 395 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l~v~ 395 (467)
....++|||+|||..+++++|+++|++ ||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||.. ++|+.|+|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345678999999999999999999999 999999999999999999999999999999999999999999 999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
++.++
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 99755
No 167
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=130.62 Aligned_cols=83 Identities=31% Similarity=0.443 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3466789999999999999999999999999999999885 688999999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
+++.
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9765
No 168
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=123.80 Aligned_cols=76 Identities=26% Similarity=0.472 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
++|||+|||+++++++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|++|++.++ ..+.|+.++|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999888 8999999999875
No 169
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=127.75 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=74.6
Q ss_pred CCCceEEEecCCCCCCHHHHH----HhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 319 FEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
...++|||+|||..+++++|+ ++|++||.|.+|+++.+..+ +|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356689999999999999999 99999999999999988766 889999999999999999999999999999999
Q ss_pred ehhhhh
Q 012257 395 ALAQRK 400 (467)
Q Consensus 395 ~~~~~~ 400 (467)
+++++.
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998754
No 170
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.2e-18 Score=124.46 Aligned_cols=82 Identities=16% Similarity=0.359 Sum_probs=76.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
.....++|||+|||+++++++|+++|+.| .|.+|.++++ .+|+++|||||+|.+.++|++|++ +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34568999999999999999999999999 9999999999 789999999999999999999999 99999999999999
Q ss_pred ecccC
Q 012257 115 YSYRD 119 (467)
Q Consensus 115 ~~~~~ 119 (467)
++...
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98655
No 171
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=130.68 Aligned_cols=84 Identities=29% Similarity=0.436 Sum_probs=78.0
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34467799999999999999999999999999999999886 58899999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 99754
No 172
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=131.20 Aligned_cols=84 Identities=26% Similarity=0.464 Sum_probs=77.1
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 316 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
......++|||+|||..+++++|+++|++||.|.+|++..+.. .++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445678999999999999999999999999999999998864 489999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98754
No 173
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=3.9e-18 Score=126.57 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=76.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|++||.|.++++..+ ++.++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346779999999999999999999999999999999984 7889999999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
++.
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 174
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=127.99 Aligned_cols=83 Identities=24% Similarity=0.423 Sum_probs=77.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCcee-EEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccc----
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTIT-SCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP---- 391 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~-~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---- 391 (467)
....++|||+|||..+++++|+++|++||.|. +|+++.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34677999999999999999999999999999 99999986 7889999999999999999999999999999999
Q ss_pred eEEehhhhh
Q 012257 392 LYVALAQRK 400 (467)
Q Consensus 392 l~v~~~~~~ 400 (467)
|+|+|+++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998754
No 175
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.1e-18 Score=131.00 Aligned_cols=84 Identities=25% Similarity=0.480 Sum_probs=78.4
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567789999999999999999999999999999999885 78899999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 99765
No 176
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-17 Score=130.18 Aligned_cols=85 Identities=27% Similarity=0.450 Sum_probs=79.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...++++|||+|||+++++++|+++|+.||.|.+|++.+++ +|+++|||||+|.+.++|++|++.+++..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45668999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCc
Q 012257 115 YSYRDP 120 (467)
Q Consensus 115 ~~~~~~ 120 (467)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987543
No 177
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=130.01 Aligned_cols=83 Identities=31% Similarity=0.521 Sum_probs=77.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..+.++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3466799999999999999999999999999999999886 678899999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
+++.
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 9765
No 178
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=127.96 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=74.8
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCC--cccCCc
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGK 109 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~ 109 (467)
+.....++++|||+|||++++|++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.+++ ..+.|+
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 3444567899999999999999999999999999999999876 47999999999999999998874 579999
Q ss_pred eeeeeecccCccc
Q 012257 110 PIRIMYSYRDPTI 122 (467)
Q Consensus 110 ~~~v~~~~~~~~~ 122 (467)
.|+|.++...+..
T Consensus 98 ~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 PIYIQFSNHKELK 110 (119)
T ss_dssp CCEEEECSSSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999998766544
No 179
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.5e-18 Score=128.59 Aligned_cols=83 Identities=30% Similarity=0.488 Sum_probs=76.7
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+..+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999998654 689999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
+++.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9864
No 180
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.2e-18 Score=122.49 Aligned_cols=75 Identities=21% Similarity=0.467 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 41 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
+|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|++|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 9999999999999764
No 181
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=129.86 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=75.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+.++|||+|||.++++++|+++|++||.|.+|++.+++ +.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4468999999999999999999999999999999999885 34889999999999999999999999999999999998
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8653
No 182
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=126.18 Aligned_cols=79 Identities=18% Similarity=0.362 Sum_probs=71.6
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC--CcEecccceEE
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLYV 394 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v 394 (467)
...++++|||+|||+.+++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|+ +..+.|+.|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999998875 7899999999999999999874 67899999999
Q ss_pred ehhhhh
Q 012257 395 ALAQRK 400 (467)
Q Consensus 395 ~~~~~~ 400 (467)
+|++.+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 999754
No 183
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=3.4e-18 Score=133.32 Aligned_cols=82 Identities=35% Similarity=0.544 Sum_probs=76.2
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999885 68899999999999999999999999999999999999
Q ss_pred hhh
Q 012257 396 LAQ 398 (467)
Q Consensus 396 ~~~ 398 (467)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 875
No 184
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=3.8e-18 Score=134.36 Aligned_cols=84 Identities=26% Similarity=0.373 Sum_probs=78.4
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
...+.++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567789999999999999999999999999999999886 67899999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 99765
No 185
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=129.25 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=70.6
Q ss_pred CCCceEEEecCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCc--EecccceEEe
Q 012257 319 FEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395 (467)
Q Consensus 319 ~~~~~l~V~nlp~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~ 395 (467)
.++++|||+|||+ .+++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.||+. .|.|++|+|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3677999999999 9999999999999999999999875 579999999999999999999865 5999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++..
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99854
No 186
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=128.97 Aligned_cols=89 Identities=18% Similarity=0.318 Sum_probs=80.4
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEEecCCCC---ccccEEEEEecChHHHHHHHHHhCCcc
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~---~~f~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
...+....++|||+|||+++++++|+ ++|++||.|.+|.+.+++.++ +++|||||+|.+.++|++|++.|++..
T Consensus 8 ~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 8 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 34556678999999999999999999 999999999999999987754 456999999999999999999999999
Q ss_pred cCCceeeeeecccCc
Q 012257 106 LNGKPIRIMYSYRDP 120 (467)
Q Consensus 106 ~~g~~~~v~~~~~~~ 120 (467)
+.|+.|+|.++..++
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999987665
No 187
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=129.61 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=79.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEE-ecCCCCccccEEEEEecChHHHHHHHHHhC--CcccCCce
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKP 110 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~-v~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~ 110 (467)
.+.+.++|||+|||+++++++|+++|+.||. |.+|.+. .++.+++++|||||+|.+.++|++|++.|+ +..+.|+.
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3456899999999999999999999999998 9999999 888889999999999999999999999996 58999999
Q ss_pred eeeeecccCcc
Q 012257 111 IRIMYSYRDPT 121 (467)
Q Consensus 111 ~~v~~~~~~~~ 121 (467)
|+|.++.....
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999876544
No 188
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=130.89 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=79.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCc---eeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
....++|||+|||+.+++++|+++|+.||. |.+|+++.+..|+++|||||+|.+.++|.+|+. +|+..++|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346678999999999999999999999988 899999999889999999999999999999999 9999999999999
Q ss_pred ehhhhhHHHHH
Q 012257 395 ALAQRKEERRA 405 (467)
Q Consensus 395 ~~~~~~~~~~~ 405 (467)
.++.+......
T Consensus 87 ~~a~~~~~~~~ 97 (107)
T 2lmi_A 87 YEINNEDVDAL 97 (107)
T ss_dssp EECCHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99987765443
No 189
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=131.52 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=76.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
...+.++|||+|||+++++++|+++|+.||.| .+|+|+.++ +++++|||||+|.+.++|++|++. ++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567999999999999999999999999999 899999998 899999999999999999999986 999999999999
Q ss_pred eecccC
Q 012257 114 MYSYRD 119 (467)
Q Consensus 114 ~~~~~~ 119 (467)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 190
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=129.58 Aligned_cols=78 Identities=15% Similarity=0.373 Sum_probs=71.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCC--cEecccceEEe
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYVA 395 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~ 395 (467)
..++++|||+|||+.+++++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.|++ ..+.|+.|+|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 446779999999999999999999999999999999875 78999999999999999999884 68999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++.+
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 99755
No 191
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=7.6e-18 Score=124.19 Aligned_cols=79 Identities=19% Similarity=0.430 Sum_probs=74.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
.++|||+|||..+++++|+++|++||.|.++++..+. ++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4589999999999999999999999999999999986 7889999999999999999999 9999999999999999875
Q ss_pred h
Q 012257 400 K 400 (467)
Q Consensus 400 ~ 400 (467)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 192
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=5.4e-18 Score=133.79 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=78.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCc---eeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~---v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
...++|||+|||+.+|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred hhhhhHHH
Q 012257 396 LAQRKEER 403 (467)
Q Consensus 396 ~~~~~~~~ 403 (467)
++.+....
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99876543
No 193
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=129.95 Aligned_cols=84 Identities=30% Similarity=0.503 Sum_probs=78.1
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhC------CcEecc
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMN------GKMVVS 389 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~------g~~~~g 389 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|| |..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34467789999999999999999999999999999999886 68899999999999999999999999 999999
Q ss_pred cceEEehhhhh
Q 012257 390 KPLYVALAQRK 400 (467)
Q Consensus 390 ~~l~v~~~~~~ 400 (467)
+.|+|.|+.++
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999999765
No 194
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-18 Score=125.19 Aligned_cols=80 Identities=26% Similarity=0.403 Sum_probs=74.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
.+.++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356789999999999999999999999999999999885 6889999999999999999999999999999999999876
Q ss_pred h
Q 012257 398 Q 398 (467)
Q Consensus 398 ~ 398 (467)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 195
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.4e-17 Score=122.09 Aligned_cols=79 Identities=28% Similarity=0.488 Sum_probs=73.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++ +++..++|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567799999999999999999999999999999999986 68999999999999999999996 588999999999987
Q ss_pred h
Q 012257 397 A 397 (467)
Q Consensus 397 ~ 397 (467)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 196
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.5e-18 Score=130.24 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=78.0
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCcee--------EEEEeeC-CCCCccceEEEEcCCHHHHHHHHHHhCCcEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT--------SCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMV 387 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~--------~v~i~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 387 (467)
.....++|||+|||..+++++|+++|++||.|. .|++..+ .++.++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 6999998 4789999999999999999999999999999
Q ss_pred cccceEEehhhhh
Q 012257 388 VSKPLYVALAQRK 400 (467)
Q Consensus 388 ~g~~l~v~~~~~~ 400 (467)
.|+.|+|++++++
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999999765
No 197
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=123.72 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|+.| .|.+|+++.+.+|+++|||||+|.+.++|.+|++ |||..|+|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3456789999999999999999999999 9999999999899999999999999999999999 9999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+++
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 198
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=4e-18 Score=135.55 Aligned_cols=90 Identities=24% Similarity=0.372 Sum_probs=82.8
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
.+....+.++|||+|||+++++++|+++|+.||.|.+|++..++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455668999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred eeeecccCcc
Q 012257 112 RIMYSYRDPT 121 (467)
Q Consensus 112 ~v~~~~~~~~ 121 (467)
+|.++.....
T Consensus 120 ~V~~a~~~~~ 129 (135)
T 2lea_A 120 RVQMARYGRP 129 (135)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999876543
No 199
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.2e-17 Score=138.21 Aligned_cols=93 Identities=20% Similarity=0.333 Sum_probs=82.3
Q ss_pred CCCCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC
Q 012257 29 GGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (467)
Q Consensus 29 ~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 108 (467)
..+.+....++++|||+|||+++++++|+++|+.||.|..|.|..++.+|.++|||||+|.+.++|.+|++.|++..|.|
T Consensus 62 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 62 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp ----CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecccCcc
Q 012257 109 KPIRIMYSYRDPT 121 (467)
Q Consensus 109 ~~~~v~~~~~~~~ 121 (467)
+.|.|.|+.....
T Consensus 142 ~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 142 QTIQVDWCFVKGP 154 (165)
T ss_dssp EECEEEESEECC-
T ss_pred EEEEEEEecCCCC
Confidence 9999999876543
No 200
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=3e-17 Score=129.15 Aligned_cols=82 Identities=20% Similarity=0.423 Sum_probs=77.6
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+.++|||+|||.++++++|+++|+.||.|.+|.+.+++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999 69999999999999998
Q ss_pred ccC
Q 012257 117 YRD 119 (467)
Q Consensus 117 ~~~ 119 (467)
...
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 201
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=8.7e-18 Score=130.37 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=74.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
..+.++|||+|||+++++++|+++|+.||. |.+|+|..++. |+++|||||+|.+.++|++|++ +++..|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345799999999999999999999999998 89999999986 9999999999999999999999 999999999999
Q ss_pred eeecc
Q 012257 113 IMYSY 117 (467)
Q Consensus 113 v~~~~ 117 (467)
|.++.
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 98764
No 202
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=130.09 Aligned_cols=82 Identities=20% Similarity=0.459 Sum_probs=76.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..++|||+|||..+++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 34689999999999999999999999999999999887 4889999999999999999999 999999999999999998
Q ss_pred hhHH
Q 012257 399 RKEE 402 (467)
Q Consensus 399 ~~~~ 402 (467)
+...
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7654
No 203
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=127.77 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=76.2
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC--CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
.....++|||+|||..+++++|+++|+.|| |.+|+++.+.. |.++|||||+|.+.++|.+|+ .|||..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345668999999999999999999999999 99999999874 889999999999999999999 99999999999999
Q ss_pred ehhhhh
Q 012257 395 ALAQRK 400 (467)
Q Consensus 395 ~~~~~~ 400 (467)
++++++
T Consensus 89 ~~a~~~ 94 (104)
T 1wi8_A 89 DVADQA 94 (104)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999765
No 204
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=124.31 Aligned_cols=81 Identities=22% Similarity=0.416 Sum_probs=74.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC--CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
..++|||+|||..+++++|+++|++||.|.++++..+.. +.++|+|||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 456899999999999999999999999999999988873 337899999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 205
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=124.05 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=74.4
Q ss_pred ccCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
+.++|||+|||+++++++|+ ++|++||.|.+|++..++.+ +|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46899999999999999999 99999999999999998765 789999999999999999999999999999999
Q ss_pred eecccCc
Q 012257 114 MYSYRDP 120 (467)
Q Consensus 114 ~~~~~~~ 120 (467)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9986543
No 206
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=5.2e-18 Score=129.54 Aligned_cols=84 Identities=25% Similarity=0.568 Sum_probs=77.8
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEe---cccce
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV---VSKPL 392 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 392 (467)
.....++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567799999999999999999999999999999999987 588999999999999999999999999998 89999
Q ss_pred EEehhhhh
Q 012257 393 YVALAQRK 400 (467)
Q Consensus 393 ~v~~~~~~ 400 (467)
+|+++++.
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999765
No 207
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=126.47 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=76.0
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++|| |.+|+++.+. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345677999999999999999999999997 9999999987 6889999999999999999999 899999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
++++.
T Consensus 89 ~a~~~ 93 (103)
T 2dng_A 89 IAEGR 93 (103)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99754
No 208
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.5e-18 Score=120.87 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=70.5
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
+|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++ +||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999987 78899999999999999999998 9999999999999875
No 209
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=126.16 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=74.4
Q ss_pred CccCeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc-
Q 012257 37 FVSTSLYVGDLDLSV------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK- 109 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~------~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~- 109 (467)
..+++|||+|||+++ ++++|+++|++||.|.+|.+. +.+|+++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 347899999999999 779999999999999999998 36789999999999999999999999999999999
Q ss_pred eeeeeecccC
Q 012257 110 PIRIMYSYRD 119 (467)
Q Consensus 110 ~~~v~~~~~~ 119 (467)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988644
No 210
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.5e-18 Score=129.42 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=75.8
Q ss_pred CCCCceEEEecCCCCCCHHHHH---HhhccCCceeEEEEeeCCC----CCccceEEEEcCCHHHHHHHHHHhCCcEeccc
Q 012257 318 KFEGLNLYVKNLDDSISDDKLK---ELFSEFGTITSCKVMRDPN----GISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~---~~F~~~G~v~~v~i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 390 (467)
....++|||+|||..+++++|+ ++|++||.|.+|++..+.. +.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 9999999999999988763 35679999999999999999999999999999
Q ss_pred ceEEehhhhh
Q 012257 391 PLYVALAQRK 400 (467)
Q Consensus 391 ~l~v~~~~~~ 400 (467)
.|+|+|++++
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999999865
No 211
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=126.76 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=70.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCc--EecccceEEe
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~ 395 (467)
..+.++|||+|||..+++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++. .+.|+.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 446779999999999999999999999999999998864 789999999999999999998765 4899999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++.+
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99754
No 212
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=129.71 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=78.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCce----eEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTI----TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v----~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
....+|||+|||+.+++++|+++|++||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456789999999999999999999999875 689999999999999999999999999999986 999999999999
Q ss_pred ehhhhhHHHHHH
Q 012257 395 ALAQRKEERRAR 406 (467)
Q Consensus 395 ~~~~~~~~~~~~ 406 (467)
..+.+.......
T Consensus 100 ~~a~~~e~~~~~ 111 (123)
T 2dha_A 100 FRSTAAEVQQVL 111 (123)
T ss_dssp EEECHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999877665543
No 213
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=121.81 Aligned_cols=73 Identities=14% Similarity=0.268 Sum_probs=68.1
Q ss_pred cCeEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc-ee
Q 012257 39 STSLYVGDLDLSV------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PI 111 (467)
Q Consensus 39 ~~~l~v~nLp~~~------~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~~ 111 (467)
+++|||+|||.++ ++++|+++|++||.|.+|.+. +.+|+++|||||+|.+.++|++|++.|++..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 679999999999999999987 35789999999999999999999999999999999 88
Q ss_pred ee
Q 012257 112 RI 113 (467)
Q Consensus 112 ~v 113 (467)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 77
No 214
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.6e-17 Score=125.51 Aligned_cols=83 Identities=24% Similarity=0.450 Sum_probs=75.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc-------
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL------- 106 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~------- 106 (467)
....+.++|||+|||+++++++|+++|+.||.|.+|++.+++ +++++|||||+|.+.++|++|++.|++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567999999999999999999999999999999999998 899999999999999999999999999998
Q ss_pred -CCceeeeeecc
Q 012257 107 -NGKPIRIMYSY 117 (467)
Q Consensus 107 -~g~~~~v~~~~ 117 (467)
.++++.|.++.
T Consensus 99 ~~~~~l~v~~a~ 110 (114)
T 1x5o_A 99 APTEPLLCKFSG 110 (114)
T ss_dssp CCSSCBEEEECC
T ss_pred CCCCceeEEccC
Confidence 56777887765
No 215
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=131.27 Aligned_cols=83 Identities=34% Similarity=0.499 Sum_probs=78.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
...+++|||+|||..+++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34667999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
.+.
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 754
No 216
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=2.7e-17 Score=135.00 Aligned_cols=86 Identities=26% Similarity=0.421 Sum_probs=80.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...++++|||+|||+++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCc
Q 012257 115 YSYRDP 120 (467)
Q Consensus 115 ~~~~~~ 120 (467)
|+....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 987543
No 217
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=126.69 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=75.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
...+|||+|||+.+++++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34589999999999999999999999 899999999999999999999999999999999 6999999999999998876
Q ss_pred hHH
Q 012257 400 KEE 402 (467)
Q Consensus 400 ~~~ 402 (467)
...
T Consensus 93 ~~~ 95 (109)
T 2dnn_A 93 RQW 95 (109)
T ss_dssp HHH
T ss_pred cch
Confidence 543
No 218
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=131.00 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=74.9
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 318 KFEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457799999999999999876 6999999999988754 578899999999999999999999999999999999
Q ss_pred EehhhhhHHH
Q 012257 394 VALAQRKEER 403 (467)
Q Consensus 394 v~~~~~~~~~ 403 (467)
|.|++.+...
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999866543
No 219
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=128.58 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=73.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC--CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
....++|||+|||..+++++|+++|+.|| |.+|++..+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34667999999999999999999999999 9999999986 7899999999999999999999 899999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
+++++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=128.33 Aligned_cols=83 Identities=29% Similarity=0.619 Sum_probs=77.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe--------cc
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--------VS 389 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--------~g 389 (467)
....++|||+|||..+++++|+++|+.||.|.+++++.+.++.++|||||+|.+.++|.+|++.|||..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3466799999999999999999999999999999999999999999999999999999999999999999 57
Q ss_pred cceEEehhhhh
Q 012257 390 KPLYVALAQRK 400 (467)
Q Consensus 390 ~~l~v~~~~~~ 400 (467)
++|.|+|+++.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998753
No 221
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=6.2e-18 Score=126.33 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=73.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..++|||+|||..+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999988887765 78899999999999999999999999999999999999876
Q ss_pred h
Q 012257 399 R 399 (467)
Q Consensus 399 ~ 399 (467)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 222
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-18 Score=122.59 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=68.1
Q ss_pred ceEEEecCCCCC------CHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEeccc-ceEE
Q 012257 322 LNLYVKNLDDSI------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYV 394 (467)
Q Consensus 322 ~~l~V~nlp~~~------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v 394 (467)
++|||+|||..+ ++++|+++|++||.|.++++. ..+|+++|||||+|.+.++|.+|++.|||..++|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 579999999999 679999999999999999988 46788999999999999999999999999999999 8887
Q ss_pred e
Q 012257 395 A 395 (467)
Q Consensus 395 ~ 395 (467)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 223
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=129.24 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=73.1
Q ss_pred CccCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.++++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999865 7999999999998853 678899999999999999999999999999999999
Q ss_pred eeecccCc
Q 012257 113 IMYSYRDP 120 (467)
Q Consensus 113 v~~~~~~~ 120 (467)
|.|+....
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99987654
No 224
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.1e-17 Score=119.80 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=72.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+.++|||+|||+++++++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4568999999999999999999999999999999997 36999999999999999999999999999999999
Q ss_pred cccCccc
Q 012257 116 SYRDPTI 122 (467)
Q Consensus 116 ~~~~~~~ 122 (467)
+......
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8765443
No 225
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.3e-18 Score=127.04 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=75.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456789999999999999999999999999888777664 788999999999999999999999999999999999999
Q ss_pred hhh
Q 012257 397 AQR 399 (467)
Q Consensus 397 ~~~ 399 (467)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 226
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=122.09 Aligned_cols=82 Identities=20% Similarity=0.395 Sum_probs=73.8
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccC--Cce
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN--GKP 110 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~ 110 (467)
.....++++|||+|||+++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|++|++.|++..+. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 334556899999999999999999999999999999999754 479999999999999999999999999 999
Q ss_pred eeeeecccCc
Q 012257 111 IRIMYSYRDP 120 (467)
Q Consensus 111 ~~v~~~~~~~ 120 (467)
|+|.++...+
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999987653
No 227
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=1.1e-17 Score=132.02 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=76.0
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
....+.++|||+|||+++++++|+++|+.||. |.+|+|.+++. |+++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456799999999999999999999999998 89999999986 9999999999999999999999 9999999999
Q ss_pred eeeeecc
Q 012257 111 IRIMYSY 117 (467)
Q Consensus 111 ~~v~~~~ 117 (467)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998764
No 228
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=123.68 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=74.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...++++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568999999999999999999999999977 56666 678899999999999999999999999999999999999
Q ss_pred ecccCcc
Q 012257 115 YSYRDPT 121 (467)
Q Consensus 115 ~~~~~~~ 121 (467)
++.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9876543
No 229
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.4e-17 Score=131.43 Aligned_cols=85 Identities=24% Similarity=0.485 Sum_probs=79.0
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 316 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
......++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344567799999999999999999999999999999999886 8889999999999999999999999999999999999
Q ss_pred ehhhhh
Q 012257 395 ALAQRK 400 (467)
Q Consensus 395 ~~~~~~ 400 (467)
+|+.+.
T Consensus 97 ~~a~~~ 102 (126)
T 3ex7_B 97 DWCFVR 102 (126)
T ss_dssp EESEES
T ss_pred EEecCC
Confidence 999755
No 230
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=122.75 Aligned_cols=82 Identities=24% Similarity=0.486 Sum_probs=74.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||+++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34456899999999999999999999999999999999865 479999999999999999999999999999999
Q ss_pred eecccCcc
Q 012257 114 MYSYRDPT 121 (467)
Q Consensus 114 ~~~~~~~~ 121 (467)
.++.....
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99876544
No 231
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.8e-18 Score=126.73 Aligned_cols=80 Identities=29% Similarity=0.556 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecccC
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 119 (467)
++|||+|||.++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.+ |.+|++.+++..+.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998654
Q ss_pred c
Q 012257 120 P 120 (467)
Q Consensus 120 ~ 120 (467)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 232
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=128.76 Aligned_cols=84 Identities=27% Similarity=0.404 Sum_probs=77.4
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 316 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
......++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.+++ .|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 344567899999999999999999999999999999999986 688999999999999999999999998 899999999
Q ss_pred ehhhhh
Q 012257 395 ALAQRK 400 (467)
Q Consensus 395 ~~~~~~ 400 (467)
+++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 999654
No 233
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=126.28 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=74.8
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.....++|||+|||..+++++|+++|++||.|.+|++..+ +.++|||||+|.+.++|.+|++.||+..|.|+.|+|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3446679999999999999999999999999999999654 55789999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
+++.
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 9754
No 234
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=125.44 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+.++|||+|||+++++++|+++|+.| .|.+|.|+.++. |+++|||||+|.+.++|++|+ .+++..+.|+.|+|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3456899999999999999999999999 889999999975 999999999999999999999 5899999999999976
Q ss_pred cc
Q 012257 116 SY 117 (467)
Q Consensus 116 ~~ 117 (467)
+.
T Consensus 90 a~ 91 (109)
T 2dnn_A 90 AT 91 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 235
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=7.8e-18 Score=127.89 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=74.5
Q ss_pred CCCceEEEecCCCCC------CHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEeccc-c
Q 012257 319 FEGLNLYVKNLDDSI------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-P 391 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~ 391 (467)
...++|||+|||..+ ++++|+++|++||.|.+|++. ..+|.++|||||+|.+.++|.+|+..|||..++|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346789999999999 789999999999999999998 56789999999999999999999999999999998 9
Q ss_pred eEEehhhhh
Q 012257 392 LYVALAQRK 400 (467)
Q Consensus 392 l~v~~~~~~ 400 (467)
|+|+++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998643
No 236
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=125.42 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=73.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||+.+++++|+++|++||.+ +|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|+|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3456789999999999999999999999955 9999999999999999999999999999995 7999999999999887
Q ss_pred hh
Q 012257 398 QR 399 (467)
Q Consensus 398 ~~ 399 (467)
.+
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 237
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.9e-18 Score=127.55 Aligned_cols=75 Identities=19% Similarity=0.425 Sum_probs=69.8
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeecc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 117 (467)
.+++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|.+|++.|++..+.|+.|+|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 345899999999999999999999999999999999875
Q ss_pred c
Q 012257 118 R 118 (467)
Q Consensus 118 ~ 118 (467)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 238
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-17 Score=123.46 Aligned_cols=79 Identities=24% Similarity=0.261 Sum_probs=73.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC-----c
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG-----K 109 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-----~ 109 (467)
.....++|||+|||+++++++|+++|++||.|.+|.|..+ |||||+|.+.++|++|++.|++..|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456899999999999999999999999999999999876 699999999999999999999999999 9
Q ss_pred eeeeeecccCc
Q 012257 110 PIRIMYSYRDP 120 (467)
Q Consensus 110 ~~~v~~~~~~~ 120 (467)
.|+|.++....
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999987654
No 239
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=134.00 Aligned_cols=84 Identities=33% Similarity=0.510 Sum_probs=78.2
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|+.||.|++|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34466799999999999999999999999999999999886 68889999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
++++.
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99865
No 240
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=118.75 Aligned_cols=78 Identities=21% Similarity=0.427 Sum_probs=71.2
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh-CCcccCCcee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPI 111 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~~ 111 (467)
+....+.++|||+|||.++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.| ++..+.|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 334456899999999999999999999999999999999864 479999999999999999988 9999999999
Q ss_pred eeeec
Q 012257 112 RIMYS 116 (467)
Q Consensus 112 ~v~~~ 116 (467)
+|.|+
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 99886
No 241
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=130.15 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+.++|||+|||+++++++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++|++ +++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456999999999999999999999999999987777777899999999999999999999999 999999999999988
Q ss_pred ccc
Q 012257 116 SYR 118 (467)
Q Consensus 116 ~~~ 118 (467)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 242
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.3e-18 Score=127.82 Aligned_cols=83 Identities=25% Similarity=0.421 Sum_probs=77.5
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++. ++..|+|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 44567899999999999999999999999999999999985 788999999999999999999998 9999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
++.++
T Consensus 91 ~a~~~ 95 (105)
T 2dh8_A 91 PCTPR 95 (105)
T ss_dssp CSCCS
T ss_pred EccCC
Confidence 98765
No 243
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=125.12 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=71.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...++|||+|||..+++++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|+|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3567999999999999999999999999999999983 57899999999999999999999999999999999987
Q ss_pred h
Q 012257 399 R 399 (467)
Q Consensus 399 ~ 399 (467)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 244
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8e-18 Score=127.03 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=70.2
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCC--cEecccceEE
Q 012257 318 KFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYV 394 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v 394 (467)
..++++|||+|||+. +++++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.|++ ..|.|+.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346779999999998 99999999999999999999975 378999999999999999998865 5689999999
Q ss_pred ehhhhh
Q 012257 395 ALAQRK 400 (467)
Q Consensus 395 ~~~~~~ 400 (467)
+|++.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999754
No 245
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-18 Score=135.07 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=77.4
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeE--EEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCc----Eecc
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITS--CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK----MVVS 389 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g 389 (467)
.....++|||+|||+.+++++|+++|++||.|.. |+|+++. +|+++|||||+|.+. +|.+|+..|||. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456779999999999999999999999999977 9999998 899999999999999 999999999999 9999
Q ss_pred cceEEehhhhh
Q 012257 390 KPLYVALAQRK 400 (467)
Q Consensus 390 ~~l~v~~~~~~ 400 (467)
+.|+|+|+++.
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999999864
No 246
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-17 Score=122.74 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=77.6
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.....++++|||+|||+++++++|+++|+.| ..|.++.++.+++++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445678999999999999999999999987 4788888988999999999999999999999999999999999999
Q ss_pred eeecccCcc
Q 012257 113 IMYSYRDPT 121 (467)
Q Consensus 113 v~~~~~~~~ 121 (467)
|.++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999876544
No 247
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=125.55 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=75.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeE-EEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITS-CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~-v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||+.+++++|+++|++||.|.+ |+++.+.+|+++|||||+|.+.++|.+|++. |+..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345679999999999999999999999999987 8999888999999999999999999999997 99999999999998
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 248
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=124.64 Aligned_cols=81 Identities=28% Similarity=0.427 Sum_probs=74.1
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
.....++|||+|||..+++++|+++|++||.| +++.+.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34467899999999999999999999999987 566777888999999999999999999999999999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++++
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9765
No 249
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=120.10 Aligned_cols=77 Identities=27% Similarity=0.444 Sum_probs=71.4
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHh-CCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM-NGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| +|..++|+.|+|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 3456678999999999999999999999999999999874 789999999999999999999 9999999999999
Q ss_pred hhh
Q 012257 396 LAQ 398 (467)
Q Consensus 396 ~~~ 398 (467)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 250
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=121.33 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
.....+++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445589999999999999999999999999986 666654 56789999999999999999999999999999999
Q ss_pred eecccC
Q 012257 114 MYSYRD 119 (467)
Q Consensus 114 ~~~~~~ 119 (467)
.++...
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 988654
No 251
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.9e-18 Score=119.83 Aligned_cols=75 Identities=32% Similarity=0.565 Sum_probs=71.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
++|||+|||..+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++|.+|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999986 68899999999999999999999999 9999999999886
No 252
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=120.60 Aligned_cols=76 Identities=18% Similarity=0.451 Sum_probs=71.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
..+.++|||+|||..+++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3467799999999999999999999999999999997 469999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+++
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 755
No 253
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=4.6e-17 Score=126.21 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=74.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..+++|||+|||..+++++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35679999999999999999999999999999999875 4568999999999999999999999999999999999998
Q ss_pred hhH
Q 012257 399 RKE 401 (467)
Q Consensus 399 ~~~ 401 (467)
+..
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 644
No 254
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.5e-18 Score=125.64 Aligned_cols=79 Identities=30% Similarity=0.518 Sum_probs=72.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.+ |.+|+..|||..++|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999887 5889999999999999 99999999999999999999999865
Q ss_pred H
Q 012257 401 E 401 (467)
Q Consensus 401 ~ 401 (467)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 255
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=1.9e-17 Score=130.35 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=73.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
.++|||+|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|+++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4589999999999999999999999999999999985 7889999999999999999999 8999999999999999874
No 256
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=122.62 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=71.4
Q ss_pred CCCccCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhC--CcccCCcee
Q 012257 35 RQFVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKPI 111 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~~ 111 (467)
...++++|||+|||++ ++|++|+++|++||.|.+|+|.+. +|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 999999999999999999999743 5899999999999999999885 456999999
Q ss_pred eeeecccCcc
Q 012257 112 RIMYSYRDPT 121 (467)
Q Consensus 112 ~v~~~~~~~~ 121 (467)
+|.++.....
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999875543
No 257
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=2.8e-17 Score=125.17 Aligned_cols=79 Identities=29% Similarity=0.575 Sum_probs=72.2
Q ss_pred ccCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 316 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
......++|||+|||..+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344567899999999999999999999999999999998 5799999999999999999999999999999999
Q ss_pred hhhhhH
Q 012257 396 LAQRKE 401 (467)
Q Consensus 396 ~~~~~~ 401 (467)
|+++..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998654
No 258
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=2.5e-17 Score=125.87 Aligned_cols=82 Identities=30% Similarity=0.520 Sum_probs=73.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||..+++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.+ |..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3456789999999999999999999999999999999986 5889999999999999999999976 5999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
+.++
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 259
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=8.8e-18 Score=119.38 Aligned_cols=75 Identities=15% Similarity=0.388 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 41 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
+|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|.+|++ +++..+.|+.++|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999998 5888999999998764
No 260
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=129.42 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=76.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeE-EEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITS-CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~-v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||+.+++++|+++|+.||.|.+ +.+..+.+|+++|||||+|.+.++|.+|++ |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345679999999999999999999999999988 455556689999999999999999999999 999999999999999
Q ss_pred hhhhHHHH
Q 012257 397 AQRKEERR 404 (467)
Q Consensus 397 ~~~~~~~~ 404 (467)
+..+....
T Consensus 101 a~~~~~~~ 108 (124)
T 1wel_A 101 ITKKGMLE 108 (124)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
Confidence 98776433
No 261
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=1.7e-17 Score=125.87 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCC-ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G-~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..++|||+|||+.+++++|+++|++|| .|..+++..+ .++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 456899999999999999999999999 8999998643 378999999999999999999999999999999999987
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 262
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=122.71 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=72.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec--ccceEEe
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV--SKPLYVA 395 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~ 395 (467)
..+.++|||+|||..+++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345678999999999999999999999999999999864 679999999999999999999999999 9999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99764
No 263
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=126.57 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=74.7
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
.+.++|||+|||+++++++|+++|+.||. |.+|.+..++. |+++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45799999999999999999999999998 89999999987 9999999999999999999999 9999999999999
Q ss_pred eeccc
Q 012257 114 MYSYR 118 (467)
Q Consensus 114 ~~~~~ 118 (467)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 87653
No 264
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=123.52 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=72.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
..+.++|||+|||..+++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 346679999999999999999999999999999999864 789999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
++.
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 265
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.9e-17 Score=124.60 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=70.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
..++|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998853 247799999999999999999999999999999999988
Q ss_pred ccCc
Q 012257 117 YRDP 120 (467)
Q Consensus 117 ~~~~ 120 (467)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6543
No 266
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=118.63 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=73.3
Q ss_pred CCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.....++++|||+|||+++++++|+++|++||.|.+|.+.+ +||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34456789999999999999999999999999999999973 3999999999999999999999999999999
Q ss_pred eeecccCcc
Q 012257 113 IMYSYRDPT 121 (467)
Q Consensus 113 v~~~~~~~~ 121 (467)
|.++.....
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999876544
No 267
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=4.5e-17 Score=126.25 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=72.7
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.....++|||+|||++++|++|+++|+.| .|. +|+|+.|+. |+++|||||+|.+.++|++|++ +++..|.|+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 566 999999986 9999999999999999999998 477899999999
Q ss_pred eeeccc
Q 012257 113 IMYSYR 118 (467)
Q Consensus 113 v~~~~~ 118 (467)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987643
No 268
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3.8e-17 Score=142.16 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=76.4
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..++|||+|||+++++++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|++||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 012257 116 SYR 118 (467)
Q Consensus 116 ~~~ 118 (467)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 269
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=5.9e-17 Score=123.36 Aligned_cols=78 Identities=24% Similarity=0.560 Sum_probs=71.6
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...++++|||+|||+++++++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999999999997 4799999999999999999999999999999999
Q ss_pred ecccCc
Q 012257 115 YSYRDP 120 (467)
Q Consensus 115 ~~~~~~ 120 (467)
++....
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 987543
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.4e-17 Score=124.92 Aligned_cols=83 Identities=33% Similarity=0.537 Sum_probs=75.2
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 318 KFEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~----~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
..++++|||+|||..+++++|+ ++|++||.|.+|++.. +|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3467799999999999999999 9999999999999874 467789999999999999999999999999999999
Q ss_pred EehhhhhHH
Q 012257 394 VALAQRKEE 402 (467)
Q Consensus 394 v~~~~~~~~ 402 (467)
|+|+++...
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999986543
No 271
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=7.1e-17 Score=132.46 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=77.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
...++|||+|||..+++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999987 5889999999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
++.
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 272
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=8e-18 Score=127.20 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=74.9
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+.++|||+|||+++++++|+++|+.||.|.+ .++.+..+++++|||||+|.+.++|++|++ |++..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999998888 667777788999999999999999999998 9999999999999998
Q ss_pred ccCc
Q 012257 117 YRDP 120 (467)
Q Consensus 117 ~~~~ 120 (467)
....
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 273
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=6.8e-17 Score=120.56 Aligned_cols=77 Identities=21% Similarity=0.400 Sum_probs=70.7
Q ss_pred cCCCCceEEEecCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
...+.++|||+|||. .+++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999998 99999999999999999999983 6799999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++..
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98754
No 274
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1e-16 Score=119.64 Aligned_cols=76 Identities=17% Similarity=0.470 Sum_probs=70.0
Q ss_pred CCccCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 36 ~~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
..++++|||+|||+ ++++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|++.+++..+.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34689999999998 99999999999999999999983 5799999999999999999999999999999999
Q ss_pred ecccC
Q 012257 115 YSYRD 119 (467)
Q Consensus 115 ~~~~~ 119 (467)
++...
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 87643
No 275
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.2e-16 Score=121.08 Aligned_cols=81 Identities=22% Similarity=0.426 Sum_probs=72.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||+++++++|+++|+.||.|.+|.+.+ +||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 3345689999999999999999999999999999999863 48999999999999999999999999999999
Q ss_pred eecccCccc
Q 012257 114 MYSYRDPTI 122 (467)
Q Consensus 114 ~~~~~~~~~ 122 (467)
.++......
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 998765443
No 276
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-17 Score=124.65 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=73.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 446779999999999999999999999999999999886 789999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
++.
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 277
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=121.78 Aligned_cols=81 Identities=30% Similarity=0.408 Sum_probs=75.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
....++|||+|||..+++++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|++ ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999986 68999999999999999999998 57899999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
+.++
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9865
No 278
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=122.69 Aligned_cols=81 Identities=21% Similarity=0.493 Sum_probs=74.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
....++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345799999999999999999999999999999999876 47999999999999999999999999999999999
Q ss_pred cccCccc
Q 012257 116 SYRDPTI 122 (467)
Q Consensus 116 ~~~~~~~ 122 (467)
+...+..
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 8776544
No 279
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.7e-17 Score=119.70 Aligned_cols=76 Identities=24% Similarity=0.473 Sum_probs=71.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|++||.|.+|++.++ ||||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 446779999999999999999999999999999999854 9999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+++
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 755
No 280
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=3.1e-17 Score=123.02 Aligned_cols=82 Identities=26% Similarity=0.516 Sum_probs=74.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
..++++|||+|||.++++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3568999999999999999999 9999999999999873 56788999999999999999999999999999999
Q ss_pred eeeecccCc
Q 012257 112 RIMYSYRDP 120 (467)
Q Consensus 112 ~v~~~~~~~ 120 (467)
+|.++....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999987653
No 281
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.9e-17 Score=126.22 Aligned_cols=80 Identities=28% Similarity=0.504 Sum_probs=75.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++. ++..|+|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 34689999999999999999999999999999999986 688999999999999999999998 9999999999999997
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
++
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 282
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-17 Score=125.00 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=72.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
..++.++|||+|||+++++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999999999999998864 45799999999999999999999999999999999
Q ss_pred ecccC
Q 012257 115 YSYRD 119 (467)
Q Consensus 115 ~~~~~ 119 (467)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98653
No 283
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-17 Score=125.66 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=74.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCc-eeEEEEe-eCC-CCCccceEEEEcCCHHHHHHHHHHhC--CcEecccceE
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVM-RDP-NGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLY 393 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~-~~~-~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~ 393 (467)
.+.++|||+|||..+++++|+++|+.||. |.+++++ .+. +|.++|||||+|.+.++|.+|++.|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 454 57889999999999999999999996 5899999999
Q ss_pred Eehhhhh
Q 012257 394 VALAQRK 400 (467)
Q Consensus 394 v~~~~~~ 400 (467)
|.|+++.
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999765
No 284
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=127.07 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..++++|||+|||+++++++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34679999999999999999999999999884433333333788999999999999999999999999999999999999
Q ss_pred cccCcc
Q 012257 116 SYRDPT 121 (467)
Q Consensus 116 ~~~~~~ 121 (467)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 876544
No 285
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.6e-17 Score=123.18 Aligned_cols=76 Identities=25% Similarity=0.306 Sum_probs=71.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecc-----cceE
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-----KPLY 393 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~l~ 393 (467)
...++|||+|||..+++++|+++|++||.|.+|+++.+ |||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 35678999999999999999999999999999999886 799999999999999999999999999 9999
Q ss_pred Eehhhhh
Q 012257 394 VALAQRK 400 (467)
Q Consensus 394 v~~~~~~ 400 (467)
|++++++
T Consensus 87 V~~a~~~ 93 (108)
T 1x4c_A 87 VKVDGPR 93 (108)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 9999864
No 286
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=3.7e-17 Score=123.74 Aligned_cols=81 Identities=21% Similarity=0.534 Sum_probs=75.5
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..++++|||+|||+++++++|+++|+.||.|.+|.+.+++ +|+++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4467999999999999999999999999999999999998 99999999999999999999998 88899999999988
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 7644
No 287
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=130.33 Aligned_cols=81 Identities=32% Similarity=0.459 Sum_probs=75.1
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467799999999999999999999999999999999885 78899999999999999999999999999999999999
Q ss_pred hh
Q 012257 396 LA 397 (467)
Q Consensus 396 ~~ 397 (467)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 288
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=112.37 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=66.7
Q ss_pred ccCe-EEEcCCCCCCCHHH----HHHHHhcC-CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 38 VSTS-LYVGDLDLSVNDSQ----LYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 38 ~~~~-l~v~nLp~~~~e~~----l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
++.+ |||+|||..+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|++|++.|++..+.||++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 99999999999988 56899999 599998 33 899999999999999999999999999999
Q ss_pred eeeecccCccc
Q 012257 112 RIMYSYRDPTI 122 (467)
Q Consensus 112 ~v~~~~~~~~~ 122 (467)
+|.++..+...
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999876554
No 289
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.3e-17 Score=114.68 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=64.5
Q ss_pred CCce-EEEecCCCCCCHHH----HHHhhccC-CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 320 EGLN-LYVKNLDDSISDDK----LKELFSEF-GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 320 ~~~~-l~V~nlp~~~~~~~----l~~~F~~~-G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
++.+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 4445 99999999999988 55899999 599998 22 8999999999999999999999999999999
Q ss_pred Eehhhhh
Q 012257 394 VALAQRK 400 (467)
Q Consensus 394 v~~~~~~ 400 (467)
|+||+.+
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9999865
No 290
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=2.3e-16 Score=131.38 Aligned_cols=85 Identities=27% Similarity=0.460 Sum_probs=79.3
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||+++++++|+++|+.||.|.+|.|..++ ++.++|||||+|.+.++|++|++.+++..+.|+.|+|
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eecccC
Q 012257 114 MYSYRD 119 (467)
Q Consensus 114 ~~~~~~ 119 (467)
.++...
T Consensus 162 ~~a~~~ 167 (177)
T 2f3j_A 162 QLVASQ 167 (177)
T ss_dssp EEESSG
T ss_pred EEecCC
Confidence 998654
No 291
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-16 Score=117.13 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=73.0
Q ss_pred CCCCCCccCeEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 32 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
+.....++++|||+|||+++++++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.|++..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34445578999999999999999999999999 899998874 46999999999999999999999999999
Q ss_pred eeeeeecccCcc
Q 012257 110 PIRIMYSYRDPT 121 (467)
Q Consensus 110 ~~~v~~~~~~~~ 121 (467)
.|+|.++.....
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999876543
No 292
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=117.21 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=72.1
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...+.++|||+|||+++++++|+++|++||.|.+|++.+ +||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345689999999999999999999999999999999973 389999999999999999999999999999999
Q ss_pred ecccCcc
Q 012257 115 YSYRDPT 121 (467)
Q Consensus 115 ~~~~~~~ 121 (467)
++.....
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 293
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=1e-16 Score=123.88 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=68.5
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccce-EEEEcCCHHHHHHHHHHhCCcEecc--cceEEehhhh
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS-GFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQR 399 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~ 399 (467)
.|||+||++.+|+++|+++|++||.|.+|++..+ .+|| |||+|.+.++|.+|++.|||..|.| +.|+|+|+++
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 5889999999999999999999999999999875 3567 9999999999999999999999988 8999999986
Q ss_pred h
Q 012257 400 K 400 (467)
Q Consensus 400 ~ 400 (467)
.
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 5
No 294
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-17 Score=124.69 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
..++|||+|||..+++++|+++|++||.|.+|++.. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 356899999999999999999999999999999875 478999999999999999999999999999999999874
No 295
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.7e-17 Score=118.85 Aligned_cols=76 Identities=26% Similarity=0.511 Sum_probs=70.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|++||.|.++++.++ ||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 346678999999999999999999999999999999854 9999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
++.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 296
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.5e-17 Score=121.56 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=70.2
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 318 KFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 318 ~~~~~~l~V~nlp~-~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
..+.++|||+|||. .+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|||..+.|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34677999999998 99999999999999999999984 57999999999999999999999999999999999
Q ss_pred hhhhH
Q 012257 397 AQRKE 401 (467)
Q Consensus 397 ~~~~~ 401 (467)
++...
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97553
No 297
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=1.6e-17 Score=125.94 Aligned_cols=76 Identities=28% Similarity=0.531 Sum_probs=70.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...++|||+|||..+++++|+++|++||.|.+|++.+ +||||+|.+.++|.+|++.|||..|.|+.|+|+|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 3567899999999999999999999999999999874 499999999999999999999999999999999997
Q ss_pred hhH
Q 012257 399 RKE 401 (467)
Q Consensus 399 ~~~ 401 (467)
+..
T Consensus 82 ~~~ 84 (103)
T 2dgu_A 82 PPD 84 (103)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 298
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.7e-17 Score=125.49 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=71.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQV----VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.+.++|||+|||+++++++|+++|+.||.| .+|.|+.+. +|+++|||||+|.+.++|++|++. ++..+.|+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 467899999999999999999999999975 699999984 899999999999999999999985 88999999998
Q ss_pred eeec
Q 012257 113 IMYS 116 (467)
Q Consensus 113 v~~~ 116 (467)
|..+
T Consensus 99 V~~a 102 (123)
T 2dha_A 99 LFRS 102 (123)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 8655
No 299
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.4e-17 Score=120.71 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=71.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|++||.|. ++++.+ .++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34567999999999999999999999999996 666653 56899999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 300
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2e-17 Score=130.88 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
......++|||+|||++++|++|+++|+.|| |.+|+|++|+. ++++|||||+|.+.++|++|+ .+++..+.|+.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3445678999999999999999999999999 66999999975 999999999999999999999 68999999999999
Q ss_pred eecccCc
Q 012257 114 MYSYRDP 120 (467)
Q Consensus 114 ~~~~~~~ 120 (467)
..+...+
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8876543
No 301
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=4e-17 Score=123.32 Aligned_cols=75 Identities=25% Similarity=0.508 Sum_probs=71.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|||..++|+.|+|+++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999987 6889999999999999999999999999999999999865
No 302
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-16 Score=118.72 Aligned_cols=79 Identities=16% Similarity=0.401 Sum_probs=70.6
Q ss_pred CCCccCeEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 35 RQFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
...++++|||+|||+ ++++++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345689999999998 99999999999999999999984 479999999999999999999999999999999
Q ss_pred eecccCcc
Q 012257 114 MYSYRDPT 121 (467)
Q Consensus 114 ~~~~~~~~ 121 (467)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99876543
No 303
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-18 Score=132.74 Aligned_cols=87 Identities=21% Similarity=0.379 Sum_probs=80.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccC
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 107 (467)
..++++|||+|||+++++++|+++|++||.|.+ |.+..++.+++++|||||+|.+.++|++|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356899999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CceeeeeecccCccc
Q 012257 108 GKPIRIMYSYRDPTI 122 (467)
Q Consensus 108 g~~~~v~~~~~~~~~ 122 (467)
|+.|+|.++...+..
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999998766544
No 304
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=3.1e-16 Score=120.30 Aligned_cols=76 Identities=24% Similarity=0.447 Sum_probs=70.1
Q ss_pred CCccCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 36 QFVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...+++|||+|||++ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999998 45899999999999999999999999999999999
Q ss_pred ecccC
Q 012257 115 YSYRD 119 (467)
Q Consensus 115 ~~~~~ 119 (467)
++...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98744
No 305
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2.5e-17 Score=117.02 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=69.4
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
+|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++. ++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 48999999999999999999999999999999886 588999999999999999999985 999999999999875
No 306
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=1.3e-17 Score=158.88 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=77.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
.+.++|||+|||..+|+++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999999885 7889999999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 854
No 307
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=1e-16 Score=128.63 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=70.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecc--cceEEehhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQ 398 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~ 398 (467)
...|||+||++.+++++|+++|++||.|++|++..+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 3468999999999999999999999999999997643 47899999999999999999999999965 999999998
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
++
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 308
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=8.6e-17 Score=124.67 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=73.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCcee--EEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEeh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTIT--SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~--~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (467)
...++|||+|||+.+++++|+++|+.| .|. +|+|+.+.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 456789999999999999999999999 566 89999998899999999999999999999985 78999999999998
Q ss_pred hhhhH
Q 012257 397 AQRKE 401 (467)
Q Consensus 397 ~~~~~ 401 (467)
+..+.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 309
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=119.78 Aligned_cols=82 Identities=16% Similarity=0.390 Sum_probs=73.2
Q ss_pred CCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
....++++|||+|||+++++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.+++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344578999999999999999999999999987766 347889999999999999999999999999999999999
Q ss_pred eecccCc
Q 012257 114 MYSYRDP 120 (467)
Q Consensus 114 ~~~~~~~ 120 (467)
.++....
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9986543
No 310
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.5e-17 Score=121.99 Aligned_cols=77 Identities=22% Similarity=0.427 Sum_probs=69.4
Q ss_pred CCCCceEEE--ecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe-----ccc
Q 012257 318 KFEGLNLYV--KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-----VSK 390 (467)
Q Consensus 318 ~~~~~~l~V--~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-----~g~ 390 (467)
..++++||| +||+..+++++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 679999999999999999999999988643 78999999999999999999999998 689
Q ss_pred ceEEehhhh
Q 012257 391 PLYVALAQR 399 (467)
Q Consensus 391 ~l~v~~~~~ 399 (467)
.|.|.|++.
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999864
No 311
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=2.3e-16 Score=115.57 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=71.6
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
++.+++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 4568999999999999999999999999 99999884 5779999999999999999999999999999999999
Q ss_pred cccCc
Q 012257 116 SYRDP 120 (467)
Q Consensus 116 ~~~~~ 120 (467)
+....
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 86543
No 312
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=118.99 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=72.9
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
.....++|||+|||..+++++|+++|+.|+ .++++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678899999999999999999999874 56777775 78899999999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|++++
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99865
No 313
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=6e-17 Score=121.12 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=71.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356789999999999999999999999998766 4567889999999999999999999999999999999999987
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
++
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=1.6e-16 Score=132.25 Aligned_cols=83 Identities=34% Similarity=0.499 Sum_probs=78.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|||..+++++|+++|+.||.|.+|+|..+.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 754
No 315
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-16 Score=119.40 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=71.5
Q ss_pred cCeEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecC----hHH----HHHHHH--HhCCc
Q 012257 39 STSLYVGDL----DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA----AHE----ATRALD--ELNFT 104 (467)
Q Consensus 39 ~~~l~v~nL----p~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~A~~--~l~~~ 104 (467)
.++|||+|| |+.++|++|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .+++.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 434 888988 67999
Q ss_pred ccCCceeeeeecc
Q 012257 105 PLNGKPIRIMYSY 117 (467)
Q Consensus 105 ~~~g~~~~v~~~~ 117 (467)
.|.|+.|+|....
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999998654
No 316
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=123.93 Aligned_cols=80 Identities=30% Similarity=0.461 Sum_probs=72.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCce----eEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTI----TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v----~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
..+.++|||+|||..+++++|+++|++||.| ..+++. ++.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3466799999999999999999999999998 455554 678899999999999999999999999999999999
Q ss_pred Eehhhhh
Q 012257 394 VALAQRK 400 (467)
Q Consensus 394 v~~~~~~ 400 (467)
|+|+++.
T Consensus 99 v~~a~~~ 105 (115)
T 2cpx_A 99 IEFGKNK 105 (115)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999865
No 317
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=117.62 Aligned_cols=78 Identities=27% Similarity=0.421 Sum_probs=69.5
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCC-cccCCceeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF-TPLNGKPIRIM 114 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~~~v~ 114 (467)
.+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.|++ ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45799999999999999999999999998 6666652 458999999999999999999999 99999999999
Q ss_pred ecccCcc
Q 012257 115 YSYRDPT 121 (467)
Q Consensus 115 ~~~~~~~ 121 (467)
++.....
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9876543
No 318
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-15 Score=114.39 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...+.++|||+|| ++++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446799999996 89999999999999999999984 456899999999999999999999999999999999
Q ss_pred ecccCcc
Q 012257 115 YSYRDPT 121 (467)
Q Consensus 115 ~~~~~~~ 121 (467)
++.....
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9876544
No 319
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=116.93 Aligned_cols=79 Identities=25% Similarity=0.260 Sum_probs=71.9
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
..+++|||+|||+++++++|+++|+.||.|.++ .+..++.++ .|||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999 588776654 399999999999999999999999999999999
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8755
No 320
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-16 Score=114.49 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=69.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
...+++|||+|||+++++++|+++|+.||.|.+| ..++.+++ ||||+|.+.++|++|++ +++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3457899999999999999999999999999987 55655655 99999999999999999 999999999999998
Q ss_pred cccC
Q 012257 116 SYRD 119 (467)
Q Consensus 116 ~~~~ 119 (467)
+...
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 7644
No 321
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=6.3e-17 Score=122.49 Aligned_cols=80 Identities=24% Similarity=0.489 Sum_probs=75.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
..++|||+|||..+++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4568999999999999999999999999999999999999999999999999999999998 99999999999999876
Q ss_pred hH
Q 012257 400 KE 401 (467)
Q Consensus 400 ~~ 401 (467)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 322
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=118.56 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=68.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCc-eeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCC-cEecccceEEeh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVSKPLYVAL 396 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~ 396 (467)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 45678999999999999999999999999 6666653 478999999999999999999999 999999999999
Q ss_pred hhhh
Q 012257 397 AQRK 400 (467)
Q Consensus 397 ~~~~ 400 (467)
++++
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9754
No 323
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=3e-17 Score=129.88 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
...++|||+|||+.+++++|+++|++|| |.+|+|+.+.+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3556899999999999999999999999 67999999999999999999999999999999 789999999999999876
Q ss_pred hh
Q 012257 399 RK 400 (467)
Q Consensus 399 ~~ 400 (467)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 324
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-16 Score=119.40 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=71.4
Q ss_pred ceEEEecC----CCCCCHHHHHHhhccCCceeEEEEeeCC-CCCccceEEEEcCC----HHH----HHHHHH--HhCCcE
Q 012257 322 LNLYVKNL----DDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFST----AEE----ASKALT--EMNGKM 386 (467)
Q Consensus 322 ~~l~V~nl----p~~~~~~~l~~~F~~~G~v~~v~i~~~~-~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 386 (467)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+ +|.++|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999999999999998 78999999999996 322 899988 789999
Q ss_pred ecccceEEehhhhhH
Q 012257 387 VVSKPLYVALAQRKE 401 (467)
Q Consensus 387 ~~g~~l~v~~~~~~~ 401 (467)
|+|+.|+|.+.+...
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999976443
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=7.9e-18 Score=130.66 Aligned_cols=84 Identities=21% Similarity=0.468 Sum_probs=77.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeE--------EEEeeCC-CCCccceEEEEcCCHHHHHHHHHHhCCcEecc
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 389 (467)
.+.++|||+|||..+++++|+++|++||.|.+ |++..+. ++.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35568999999999999999999999999998 8898885 68899999999999999999999999999999
Q ss_pred cceEEehhhhhHH
Q 012257 390 KPLYVALAQRKEE 402 (467)
Q Consensus 390 ~~l~v~~~~~~~~ 402 (467)
+.|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987654
No 326
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=4e-16 Score=120.25 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=66.8
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccce-EEEEcCCHHHHHHHHHHhCCcEecc--cceEEehhhh
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS-GFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQR 399 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~ 399 (467)
.|||+||++.+++++|+++|++||.|.+|++... .|| |||+|.+.++|.+|++.|||..|.| +.|+|+|+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4689999999999999999999999999999763 276 9999999999999999999999987 6899999986
Q ss_pred h
Q 012257 400 K 400 (467)
Q Consensus 400 ~ 400 (467)
.
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 5
No 327
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2.6e-16 Score=115.30 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=68.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
..++|||+|||..+++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..++|+.|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45689999999999999999999999 99999984 5789999999999999999999999999999999999854
No 328
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=116.56 Aligned_cols=76 Identities=33% Similarity=0.489 Sum_probs=70.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccC--CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~--G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
....++|||+|||..+++++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..|||..++|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3466799999999999999999999999 999999875 4599999999999999999999999999999999
Q ss_pred hhhhh
Q 012257 396 LAQRK 400 (467)
Q Consensus 396 ~~~~~ 400 (467)
|+++.
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 99764
No 329
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-17 Score=124.47 Aligned_cols=80 Identities=28% Similarity=0.390 Sum_probs=71.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeC-CCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
...++|||+|||..+++++|+++|+.||.|.. +++.+ .+|.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999887 44444 468889999999999999999998 9999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 330
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=8.4e-16 Score=115.63 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCceEEEecCCC-----CCCHHHHHHhhccCCceeEEEEeeCC--CCCccceEEEEcCCHHHHHHHHHHhCCcEecccc
Q 012257 319 FEGLNLYVKNLDD-----SISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (467)
Q Consensus 319 ~~~~~l~V~nlp~-----~~~~~~l~~~F~~~G~v~~v~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 391 (467)
.++++|+|.|+.. .-++++|++.|++||.|.+|+|..++ ++.++|+|||+|.+.++|.+|++.|||+.++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4667999999963 23789999999999999999999876 3678999999999999999999999999999999
Q ss_pred eEEehhhhhH
Q 012257 392 LYVALAQRKE 401 (467)
Q Consensus 392 l~v~~~~~~~ 401 (467)
|.|.|+....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999998643
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=2.6e-16 Score=120.75 Aligned_cols=75 Identities=23% Similarity=0.532 Sum_probs=69.7
Q ss_pred CCCceEEEecCCCC-CCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
...++|||+|||.. +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999 999999999999999999998 4679999999999999999999999999999999998
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=116.04 Aligned_cols=76 Identities=32% Similarity=0.476 Sum_probs=69.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|| .+++++|+++|++||.|.+|++. .++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 346679999996 89999999999999999999985 35789999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
+++
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 333
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.1e-15 Score=122.77 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=70.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC--ceeeeeec
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIMYS 116 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~~ 116 (467)
..+|||+||++.+++++|+++|++||.|++|++..+. ++|||||+|.+.++|++|++.|++..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4678999999999999999999999999999997543 46899999999999999999999999966 99999998
Q ss_pred ccCc
Q 012257 117 YRDP 120 (467)
Q Consensus 117 ~~~~ 120 (467)
....
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 7653
No 334
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=120.04 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=67.9
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
...+++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.++ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35689999999999999999999999999999 888888777 7999999999999999999999884 36777776
Q ss_pred eeec
Q 012257 113 IMYS 116 (467)
Q Consensus 113 v~~~ 116 (467)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 335
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=5.4e-16 Score=113.44 Aligned_cols=76 Identities=17% Similarity=0.400 Sum_probs=63.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe--cccceEEeh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~ 396 (467)
.+..+|||+|||+.+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+ ++|..+ .|+.|.|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 45678999999999999999999999999999999885 68999999999999883 566665 489999999
Q ss_pred hhhhHH
Q 012257 397 AQRKEE 402 (467)
Q Consensus 397 ~~~~~~ 402 (467)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987653
No 336
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=1.4e-16 Score=151.73 Aligned_cols=152 Identities=15% Similarity=0.298 Sum_probs=107.3
Q ss_pred HHHHHHhcCCCeEEEEEEe----cC-CCCccccEE--EEEecChHHHHHHHHHhCCcccCC---------------ceee
Q 012257 55 QLYDLFNQMGQVVSVRVCR----DL-STRRSLGYG--YVNYNAAHEATRALDELNFTPLNG---------------KPIR 112 (467)
Q Consensus 55 ~l~~~f~~~G~v~~v~i~~----~~-~~~~~~g~a--fV~f~~~~~A~~A~~~l~~~~~~g---------------~~~~ 112 (467)
.|..+|..+|+|..|..+. ++ .+....|++ |+.|.+..++..++..++.....+ ..+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3788999999998874332 22 122222333 778877655543332211111110 1111
Q ss_pred eeecccCcccccCCCccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeC-CCCCceeEEEEEeCCHHHHHHHHHHhcCC
Q 012257 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGM 191 (467)
Q Consensus 113 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~-~~g~~~~~afV~f~~~~~A~~a~~~l~~~ 191 (467)
+......+.......++|||+|||..+|+++|.++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||+.|+|.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 11111222223344579999999999999999999999999999999988 68899999999999999999999999999
Q ss_pred ccCCeeeEecccccc
Q 012257 192 LLNDKQVFVGPFLRK 206 (467)
Q Consensus 192 ~~~g~~~~v~~~~~~ 206 (467)
.|.|+.|.|.++...
T Consensus 168 ~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 168 KIDGRRVLVDVERGR 182 (437)
T ss_pred EECCEEEEEEEeCCC
Confidence 999999999887654
No 337
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=2e-15 Score=116.64 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=69.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccE-EEEEecChHHHHHHHHHhCCcccCC--ceeeeee
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~ 115 (467)
--+|||+||++.+++++|+++|++||.|.+|++..+. +|+ |||+|.+.++|++|++.|++..|.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3567799999999999999999999999999998753 366 9999999999999999999999988 8899999
Q ss_pred cccCc
Q 012257 116 SYRDP 120 (467)
Q Consensus 116 ~~~~~ 120 (467)
+....
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 87653
No 338
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=116.63 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=67.6
Q ss_pred CCccCeEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc-----CC
Q 012257 36 QFVSTSLYV--GDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL-----NG 108 (467)
Q Consensus 36 ~~~~~~l~v--~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-----~g 108 (467)
..++++||| +||+++++|++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.||+..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 779999999999999999999999988643 57999999999999999999999887 67
Q ss_pred ceeeeeeccc
Q 012257 109 KPIRIMYSYR 118 (467)
Q Consensus 109 ~~~~v~~~~~ 118 (467)
+.|.|.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 8888877653
No 339
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=127.11 Aligned_cols=83 Identities=28% Similarity=0.475 Sum_probs=72.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEE------EEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccc
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC------KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v------~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 391 (467)
..+.++|||+|||..+++++|+++|+.||.|..+ .+....+|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999998764 1222246888999999999999999999999999999999
Q ss_pred eEEehhhhh
Q 012257 392 LYVALAQRK 400 (467)
Q Consensus 392 l~v~~~~~~ 400 (467)
|.|.|+++.
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999754
No 340
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.7e-15 Score=113.99 Aligned_cols=85 Identities=8% Similarity=0.087 Sum_probs=74.7
Q ss_pred CCCCccCeEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEEecCCC-CccccEEEEEecChHHHHHHHHHhCCcccC
Q 012257 34 ARQFVSTSLYVGDLDL-----SVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (467)
Q Consensus 34 ~~~~~~~~l~v~nLp~-----~~~e~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 107 (467)
....++++|+|+||.. +.++++|++.|++||.|.+|+|.+++.+ ++++|+|||+|.+.++|.+|++.||+..+.
T Consensus 3 i~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 3 MGKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp GGGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3456789999999973 3468999999999999999999998654 688999999999999999999999999999
Q ss_pred Cceeeeeeccc
Q 012257 108 GKPIRIMYSYR 118 (467)
Q Consensus 108 g~~~~v~~~~~ 118 (467)
|+.|+|.++..
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 99999988753
No 341
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=7.2e-16 Score=118.98 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=62.7
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
.+..++|||+|||+++++++|+++|++||.|.+|.|..+ |||||+|.+.++|++|++.|++..|.|+.++
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 346799999999999999999999999999999999766 7999999999999999999999999999833
No 342
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.2e-14 Score=111.97 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=66.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccE-EEEEecChHHHHHHHHHhCCcccCC--ceeeeeec
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALDELNFTPLNG--KPIRIMYS 116 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~~ 116 (467)
..|||+||++.+++++|+++|++||.|.+|+|... .|+ |||+|.+.++|.+|++.|++..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 44679999999999999999999999999999752 175 9999999999999999999999987 58999988
Q ss_pred ccCc
Q 012257 117 YRDP 120 (467)
Q Consensus 117 ~~~~ 120 (467)
....
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 6553
No 343
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=113.22 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=66.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
..++|||+|||..+++++|+++|++||.|.+| +....+|. ||||+|.+.++|.+|++ |||..++|+.|+|+++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 45689999999999999999999999999987 33333444 99999999999999999 999999999999998754
Q ss_pred h
Q 012257 400 K 400 (467)
Q Consensus 400 ~ 400 (467)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 344
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6e-16 Score=115.66 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=70.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhccCCceeEEE-EeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK-VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
...++|||+|||..+++++|+++|++||.|.+++ ++.+.. .+.|||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3567899999999999999999999999999995 777643 234999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 865
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=127.55 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=72.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE-----EecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCce
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-----CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i-----~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 110 (467)
..++++|||+|||+++++++|+++|+.||.|.++.+ ++...+++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456799999999999999999999999998876410 111246789999999999999999999999999999999
Q ss_pred eeeeecccC
Q 012257 111 IRIMYSYRD 119 (467)
Q Consensus 111 ~~v~~~~~~ 119 (467)
|+|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 346
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=7.2e-16 Score=118.96 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccc-----eEE
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP-----LYV 394 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----l~v 394 (467)
..++|||+|||..+++++|+++|++||.|.+|+++.+ |||||+|.+.++|.+|++.|||..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4568999999999999999999999999999999876 79999999999999999999999999999 555
Q ss_pred ehhhh
Q 012257 395 ALAQR 399 (467)
Q Consensus 395 ~~~~~ 399 (467)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 55443
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.2e-15 Score=111.73 Aligned_cols=73 Identities=22% Similarity=0.534 Sum_probs=67.4
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCc
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT 104 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 104 (467)
++++++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4578999999999999999999999999 8 9999998765 479999999999999999 89999
Q ss_pred ccCCceeeeee
Q 012257 105 PLNGKPIRIMY 115 (467)
Q Consensus 105 ~~~g~~~~v~~ 115 (467)
.+.|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999863
No 348
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.1e-15 Score=111.85 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=62.0
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...+.++|||+|||++++|++|+++|++||.|.+|++.++ ++|||||+|.+.++|+++.. ....+.|+.+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEE
Confidence 3456899999999999999999999999999999999874 67999999999999984322 1234579999998
Q ss_pred ecccC
Q 012257 115 YSYRD 119 (467)
Q Consensus 115 ~~~~~ 119 (467)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 87643
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.4e-15 Score=116.71 Aligned_cols=76 Identities=32% Similarity=0.476 Sum_probs=69.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehh
Q 012257 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 397 (467)
....++|||+|+ .+++++|+++|++||.|.+|++. .++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346779999996 69999999999999999999986 35789999999999999999999999999999999999
Q ss_pred hhh
Q 012257 398 QRK 400 (467)
Q Consensus 398 ~~~ 400 (467)
++.
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-15 Score=112.16 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=67.2
Q ss_pred CCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeee
Q 012257 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (467)
Q Consensus 36 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 115 (467)
+.++++|||+|||+++++++|+++|++||.|.+|++.++ ++|||||+|.+.++|++|... ...+.|+.|+|.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 346899999999999999999999999999999999865 568999999999999876442 3456999999998
Q ss_pred cccCcc
Q 012257 116 SYRDPT 121 (467)
Q Consensus 116 ~~~~~~ 121 (467)
+.....
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876544
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.1e-15 Score=115.41 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeee
Q 012257 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 114 (467)
...++++|||+|| ++++++|+++|+.||.|.+|.+. +++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999995 79999999999999999999985 456899999999999999999999999999999999
Q ss_pred ecccCcc
Q 012257 115 YSYRDPT 121 (467)
Q Consensus 115 ~~~~~~~ 121 (467)
++.....
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9876543
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.5e-15 Score=109.24 Aligned_cols=71 Identities=20% Similarity=0.479 Sum_probs=66.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccC----C-------ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEF----G-------TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~----G-------~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 388 (467)
..++|||+|||..+++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45689999999999999999999999 8 9999998865 789999999999999999 99999999
Q ss_pred ccceEEeh
Q 012257 389 SKPLYVAL 396 (467)
Q Consensus 389 g~~l~v~~ 396 (467)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999973
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4.4e-15 Score=125.57 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=73.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
.++|||+|||..+++++|+++|++||.|.+|+++++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|.|.+++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 458999999999999999999999999999999999999999999999999999999998654 5999999999998765
Q ss_pred HH
Q 012257 401 EE 402 (467)
Q Consensus 401 ~~ 402 (467)
..
T Consensus 188 ~~ 189 (193)
T 2voo_A 188 FA 189 (193)
T ss_dssp --
T ss_pred HH
Confidence 43
No 354
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=6.4e-15 Score=110.88 Aligned_cols=83 Identities=17% Similarity=0.330 Sum_probs=72.1
Q ss_pred CCCceEEEecC--CCCCC--------HHHHHHhhccCCceeEEEEeeCCCC---CccceEEEEcCCHHHHHHHHHHhCCc
Q 012257 319 FEGLNLYVKNL--DDSIS--------DDKLKELFSEFGTITSCKVMRDPNG---ISRGSGFVAFSTAEEASKALTEMNGK 385 (467)
Q Consensus 319 ~~~~~l~V~nl--p~~~~--------~~~l~~~F~~~G~v~~v~i~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~ 385 (467)
.+++.|.+.|+ +..+. +++|++.|++||.|.+|+|+++..+ .++|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33333 3699999999999999999988743 67899999999999999999999999
Q ss_pred EecccceEEehhhhhH
Q 012257 386 MVVSKPLYVALAQRKE 401 (467)
Q Consensus 386 ~~~g~~l~v~~~~~~~ 401 (467)
.++|+.|+|+|+....
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999987654
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=3.8e-15 Score=128.25 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=70.4
Q ss_pred CCCceEEEecCCCCC---------CHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe--
Q 012257 319 FEGLNLYVKNLDDSI---------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-- 387 (467)
Q Consensus 319 ~~~~~l~V~nlp~~~---------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 387 (467)
...++|||+||+..+ ++++|+++|++||.|++|+|+. ++|||||+|.+.++|..|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 356799999999988 7999999999999999999986 488999999999999999999999999
Q ss_pred ----------cccceEEehhhhhHH
Q 012257 388 ----------VSKPLYVALAQRKEE 402 (467)
Q Consensus 388 ----------~g~~l~v~~~~~~~~ 402 (467)
.|+.|.|+||+....
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC----
T ss_pred cccccccccCCCCEEEEEEccCCCC
Confidence 899999999986644
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-15 Score=114.40 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=65.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC----CCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN----GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
..++|||+|||..+++++|+++|++||.|. ++++.+.. |+++|||||+|.+.++|.+|++.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 567899999999999999999999999999 88777653 6899999999999999999999984 3677777766
Q ss_pred hhh
Q 012257 396 LAQ 398 (467)
Q Consensus 396 ~~~ 398 (467)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 357
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=8.5e-15 Score=123.80 Aligned_cols=80 Identities=14% Similarity=0.293 Sum_probs=72.8
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
...++|||+|||+++++++|+++|+.||.|.+|.+.++. +++++|||||+|.+.++|.+|++.++ ..+.|+.|+|.+.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 346999999999999999999999999999999999986 58999999999999999999998654 5899999999886
Q ss_pred cc
Q 012257 117 YR 118 (467)
Q Consensus 117 ~~ 118 (467)
..
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-15 Score=110.32 Aligned_cols=75 Identities=19% Similarity=0.365 Sum_probs=63.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 399 (467)
..++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+. ....+.|+.|+|+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 4578999999999999999999999999999999875 67899999999999975422 12344899999999876
Q ss_pred h
Q 012257 400 K 400 (467)
Q Consensus 400 ~ 400 (467)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 359
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=2.3e-15 Score=113.21 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=62.6
Q ss_pred EecCCCCCCHHHHHHhh------------ccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceE
Q 012257 326 VKNLDDSISDDKLKELF------------SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (467)
Q Consensus 326 V~nlp~~~~~~~l~~~F------------~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (467)
+.||+..+++++|++.| ++||.|.+|+|.++..++++|||||+|.+.++|.+|+..|||+.++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34555556666666555 999999999999988889999999999999999999999999999999999
Q ss_pred Eehh
Q 012257 394 VALA 397 (467)
Q Consensus 394 v~~~ 397 (467)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.6e-14 Score=106.76 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCCCccCeEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh
Q 012257 33 DARQFVSTSLYVGDLDLSVN-----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 33 ~~~~~~~~~l~v~nLp~~~~-----------e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
..+..++++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34556799999999954332 5799999999999999966 444 27899999999999999999999
Q ss_pred CCcccCCceeeeeecccCccc
Q 012257 102 NFTPLNGKPIRIMYSYRDPTI 122 (467)
Q Consensus 102 ~~~~~~g~~~~v~~~~~~~~~ 122 (467)
++..+.|+.|+|.++......
T Consensus 85 ng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTCEETTEECEEEECCSCCCS
T ss_pred CCCEECCcEEEEEEeCCCCCc
Confidence 999999999999998765443
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=108.38 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCCCceEEEecCCCCCC-----------HHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcE
Q 012257 318 KFEGLNLYVKNLDDSIS-----------DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386 (467)
Q Consensus 318 ~~~~~~l~V~nlp~~~~-----------~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 386 (467)
..++++|+|.||..... +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|+..|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34677999999944332 5899999999999999966 443 378999999999999999999999999
Q ss_pred ecccceEEehhhhh
Q 012257 387 VVSKPLYVALAQRK 400 (467)
Q Consensus 387 ~~g~~l~v~~~~~~ 400 (467)
++|+.|+|.|+.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998754
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.2e-14 Score=123.56 Aligned_cols=80 Identities=21% Similarity=0.425 Sum_probs=71.0
Q ss_pred CCCccCeEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcc
Q 012257 35 RQFVSTSLYVGDLDLSV---------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~~---------~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 105 (467)
....+++|||+||+.++ +|++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678999999999998 79999999999999999999854 5899999999999999999999999
Q ss_pred c------------CCceeeeeecccCc
Q 012257 106 L------------NGKPIRIMYSYRDP 120 (467)
Q Consensus 106 ~------------~g~~~~v~~~~~~~ 120 (467)
+ .|+.|.|.|+...+
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999997654
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=3.8e-14 Score=108.60 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=71.2
Q ss_pred CCceEEEecCC--CCC---CHHHHHHhhccCCceeEEEEeeCCC-----CCccceEEEEcCCHHHHHHHHHHhCCcEecc
Q 012257 320 EGLNLYVKNLD--DSI---SDDKLKELFSEFGTITSCKVMRDPN-----GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (467)
Q Consensus 320 ~~~~l~V~nlp--~~~---~~~~l~~~F~~~G~v~~v~i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 389 (467)
++++|++.|+- .++ .+++|++.|++||.|.+|+|+++.. +.++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67789999993 222 3689999999999999999998753 4678999999999999999999999999999
Q ss_pred cceEEehhhhh
Q 012257 390 KPLYVALAQRK 400 (467)
Q Consensus 390 ~~l~v~~~~~~ 400 (467)
+.|+|+|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998754
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=5.2e-14 Score=105.88 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=71.1
Q ss_pred CccCeEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEEecCCC--CccccEEEEEecChHHHHHHHHHhCCc
Q 012257 37 FVSTSLYVGDL--DLSVN--------DSQLYDLFNQMGQVVSVRVCRDLST--RRSLGYGYVNYNAAHEATRALDELNFT 104 (467)
Q Consensus 37 ~~~~~l~v~nL--p~~~~--------e~~l~~~f~~~G~v~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~ 104 (467)
.+++.|.|.|+ |.++. +++|++.|++||.|.+|+|.++..+ ++++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999998 44443 3689999999999999999988754 367899999999999999999999999
Q ss_pred ccCCceeeeeecc
Q 012257 105 PLNGKPIRIMYSY 117 (467)
Q Consensus 105 ~~~g~~~~v~~~~ 117 (467)
.+.||.|++.+..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999998864
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.3e-13 Score=105.58 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=70.9
Q ss_pred ccCeEEEcCCCC--C---CCHHHHHHHHhcCCCeEEEEEEecCC----CCccccEEEEEecChHHHHHHHHHhCCcccCC
Q 012257 38 VSTSLYVGDLDL--S---VNDSQLYDLFNQMGQVVSVRVCRDLS----TRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (467)
Q Consensus 38 ~~~~l~v~nLp~--~---~~e~~l~~~f~~~G~v~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 108 (467)
++++|+|.|+-. + --+++|++.|++||.|.+|+|.++.. +++++|+|||+|.+.++|.+|++.||+..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999842 2 23589999999999999999999865 45788999999999999999999999999999
Q ss_pred ceeeeeecc
Q 012257 109 KPIRIMYSY 117 (467)
Q Consensus 109 ~~~~v~~~~ 117 (467)
+.|++.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999998864
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=2.9e-14 Score=107.17 Aligned_cols=72 Identities=28% Similarity=0.503 Sum_probs=63.7
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 44 VGDLDLSVNDSQLYDLF------------NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 44 v~nLp~~~~e~~l~~~f------------~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
+.|||+++++++|+++| ++||.|.+|+|.++. +++++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777888777666 999999999999886 47899999999999999999999999999999999
Q ss_pred eeeec
Q 012257 112 RIMYS 116 (467)
Q Consensus 112 ~v~~~ 116 (467)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=5.4e-13 Score=101.38 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCCceEEEecCCC--CC--------CHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec
Q 012257 319 FEGLNLYVKNLDD--SI--------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (467)
Q Consensus 319 ~~~~~l~V~nlp~--~~--------~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 388 (467)
.++++|.+.|+=. .. .+++|++.|++||.|.+|+|.++. ++|+|||+|.+.++|.+|++.|||+.++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4677899999832 21 136889999999999999997653 4899999999999999999999999999
Q ss_pred ccceEEehhhhhHH
Q 012257 389 SKPLYVALAQRKEE 402 (467)
Q Consensus 389 g~~l~v~~~~~~~~ 402 (467)
|+.|+|+|+....-
T Consensus 82 GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 82 GKMITAAYVPLPTY 95 (114)
T ss_dssp TEECEEEEECHHHH
T ss_pred CEEEEEEEEcHHHH
Confidence 99999999976544
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.7e-13 Score=97.94 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=57.0
Q ss_pred CCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhh
Q 012257 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (467)
Q Consensus 331 ~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 400 (467)
..+++++|+++|++||.|.+|+++ ++++|||||+|.+.++|.+|++.+++ +.|+.|+|+|+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999998 35789999999999999999998554 67999999998754
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-12 Score=94.79 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=64.7
Q ss_pred cCeEEEcCCC-------CCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCcee
Q 012257 39 STSLYVGDLD-------LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (467)
Q Consensus 39 ~~~l~v~nLp-------~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 111 (467)
..+|.|.-.. .++++++|+++|++||.|.+|.|. ++++|||||+|.+.++|.+|++.++ .+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 6678887765 458999999999999999999997 3577999999999999999999744 4789999
Q ss_pred eeeecccCcc
Q 012257 112 RIMYSYRDPT 121 (467)
Q Consensus 112 ~v~~~~~~~~ 121 (467)
+|.|+...+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876543
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1e-12 Score=119.51 Aligned_cols=77 Identities=25% Similarity=0.452 Sum_probs=66.8
Q ss_pred cCCCCceEEEec--CCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEec---cc-
Q 012257 317 DKFEGLNLYVKN--LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SK- 390 (467)
Q Consensus 317 ~~~~~~~l~V~n--lp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~- 390 (467)
...++.+|||+| |+..++|++|+++|++||.|++|++.. +||||||+|.+.++|.+|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 345777999999 578999999999999999999988754 4789999999999999999999999884 44
Q ss_pred -ceEEehhh
Q 012257 391 -PLYVALAQ 398 (467)
Q Consensus 391 -~l~v~~~~ 398 (467)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888873
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=2.6e-12 Score=116.89 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=64.0
Q ss_pred CCccCeEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc---CCc-
Q 012257 36 QFVSTSLYVGD--LDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL---NGK- 109 (467)
Q Consensus 36 ~~~~~~l~v~n--Lp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~- 109 (467)
+.++++|||+| |+..++|++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.||+..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56789999999 578999999999999999999998754 458999999999999999999999876 344
Q ss_pred -eeeeeec
Q 012257 110 -PIRIMYS 116 (467)
Q Consensus 110 -~~~v~~~ 116 (467)
.+.+.+.
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555554
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=6.7e-12 Score=95.34 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=66.1
Q ss_pred CccCeEEEcCCCCCCC----------HHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCccc
Q 012257 37 FVSTSLYVGDLDLSVN----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~----------e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 106 (467)
.++++|.|.|+=..-. +++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.||+..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4688999999854322 24789999999999999997653 479999999999999999999999999
Q ss_pred CCceeeeeecc
Q 012257 107 NGKPIRIMYSY 117 (467)
Q Consensus 107 ~g~~~~v~~~~ 117 (467)
.|+.|++.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999998864
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.5e-12 Score=88.89 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=63.5
Q ss_pred CCCceEEEecCC----CCCCH----HHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEeccc
Q 012257 319 FEGLNLYVKNLD----DSISD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (467)
Q Consensus 319 ~~~~~l~V~nlp----~~~~~----~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 390 (467)
++..+|+|.-.+ ..+.+ .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 455688888776 34444 688999999999999999997 59999999999999998 999999999
Q ss_pred ceEEehhhh
Q 012257 391 PLYVALAQR 399 (467)
Q Consensus 391 ~l~v~~~~~ 399 (467)
.|+|+++++
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=9.9e-11 Score=88.66 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=71.0
Q ss_pred cCCCCceEEEecCCCC-CCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCC-HHHHHHHHHHhC--CcEecccce
Q 012257 317 DKFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST-AEEASKALTEMN--GKMVVSKPL 392 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~-~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~g~~l 392 (467)
.-..++.|+|+||+.. +++++|+++|+.||.|.+|.+.++.. .|||+|.+ ..+|..|+..|+ +..|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 4457789999999999 99999999999999999999988744 79999999 899999999995 778899999
Q ss_pred EEehhhhhHHH
Q 012257 393 YVALAQRKEER 403 (467)
Q Consensus 393 ~v~~~~~~~~~ 403 (467)
+++......+.
T Consensus 89 ~~evL~GeeE~ 99 (121)
T 1owx_A 89 TWEVLEGEVEK 99 (121)
T ss_dssp EEEECCHHHHH
T ss_pred EEEECCCHHHH
Confidence 99876544433
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=5.5e-11 Score=84.12 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=64.0
Q ss_pred cCCCCceEEEecCCCC-----CCH----HHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEe
Q 012257 317 DKFEGLNLYVKNLDDS-----ISD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV 387 (467)
Q Consensus 317 ~~~~~~~l~V~nlp~~-----~~~----~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 387 (467)
..++..+|+|.-++.. +.+ .+|.+.|++||.|..+++..+ .+||+|.+.++|.+||+ |||..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 3456678999988742 333 578899999999999999998 59999999999999998 999999
Q ss_pred cccceEEehhh
Q 012257 388 VSKPLYVALAQ 398 (467)
Q Consensus 388 ~g~~l~v~~~~ 398 (467)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999865
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.6e-10 Score=85.01 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=65.8
Q ss_pred CCCccCeEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecC-hHHHHHHHHHhC--CcccCCce
Q 012257 35 RQFVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA-AHEATRALDELN--FTPLNGKP 110 (467)
Q Consensus 35 ~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--~~~~~g~~ 110 (467)
.-...+.|+|+||+.+ +++++|+++|+.||.|..|.+.++.. .|||.|.+ .++|..|++.++ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456799999999999 99999999999999999999988875 59999999 799999999984 67788887
Q ss_pred eeeee
Q 012257 111 IRIMY 115 (467)
Q Consensus 111 ~~v~~ 115 (467)
+++..
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77753
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=9.7e-10 Score=77.47 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=61.5
Q ss_pred CccCeEEEcCCCC----C-CCH---HHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC
Q 012257 37 FVSTSLYVGDLDL----S-VND---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (467)
Q Consensus 37 ~~~~~l~v~nLp~----~-~~e---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 108 (467)
++..+|+|.-.+. + .++ .+|.+.|+.||.|..+++..++ +||+|.+.++|.+|++ |++..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3567888887762 2 232 5789999999999999998875 8999999999999998 99999999
Q ss_pred ceeeeeeccc
Q 012257 109 KPIRIMYSYR 118 (467)
Q Consensus 109 ~~~~v~~~~~ 118 (467)
+.|+|....+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999987653
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=8e-10 Score=96.04 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=62.0
Q ss_pred CCHHHHHHhhccCCceeEEEEeeCC-----CCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhhhhH
Q 012257 333 ISDDKLKELFSEFGTITSCKVMRDP-----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (467)
Q Consensus 333 ~~~~~l~~~F~~~G~v~~v~i~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 401 (467)
-.+++|++.|++||.|.+++|.++. ++.++|++||+|.+.++|.+|+..|||+.++||.|.+.|.....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 3568999999999999999998664 34889999999999999999999999999999999999987543
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.5e-09 Score=75.64 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=61.0
Q ss_pred CccCeEEEcCCCCC------CCH---HHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccC
Q 012257 37 FVSTSLYVGDLDLS------VND---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (467)
Q Consensus 37 ~~~~~l~v~nLp~~------~~e---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 107 (467)
++..+|+|.-++.. -++ .+|.+.|+.||.|..+++..|+ +||+|.+.++|.+|++ |++..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45689999988743 232 4689999999999999998875 8999999999999998 9999999
Q ss_pred Cceeeeeec
Q 012257 108 GKPIRIMYS 116 (467)
Q Consensus 108 g~~~~v~~~ 116 (467)
|+.|+|..-
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999999753
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.80 E-value=4.6e-08 Score=70.39 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=69.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccC-----CceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEF-----GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
..++|-+-|||..+++..|+.+.+++ |.++.+.+..+.. =|+|+|.|..+|.+|.-+|+|..|.|++|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 46789999999999999999999999 9999999999843 6999999999999999999999999999999
Q ss_pred ehhhhhH
Q 012257 395 ALAQRKE 401 (467)
Q Consensus 395 ~~~~~~~ 401 (467)
.-.....
T Consensus 95 gTv~eL~ 101 (117)
T 2l9w_A 95 GTINDMK 101 (117)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 8655443
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=1.4e-08 Score=88.24 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=65.1
Q ss_pred cCeEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEEecCCC----CccccEEEEEecChHHHHHHHHHhCCcccCCc
Q 012257 39 STSLYVGDLDL-----SVNDSQLYDLFNQMGQVVSVRVCRDLST----RRSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (467)
Q Consensus 39 ~~~l~v~nLp~-----~~~e~~l~~~f~~~G~v~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 109 (467)
++.+.+.|+-. +-.+++|++.|++||.|.++.|.++..+ ++++|++||+|.+.++|.+|++.|++..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34455555432 2345789999999999999999965544 48999999999999999999999999999999
Q ss_pred eeeeeecc
Q 012257 110 PIRIMYSY 117 (467)
Q Consensus 110 ~~~v~~~~ 117 (467)
.|.+.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99998764
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=8.5e-07 Score=63.54 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=73.2
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
...+|.|.|||++++++.|.-+|+.- |+|.+|.... +.|+|+|.+.+.|++.++. ....+.+..+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 46899999999999999999999872 5999998865 2699999999999999984 45678999999
Q ss_pred eeecccCcccccCCCccEEEcCCCCcCC
Q 012257 113 IMYSYRDPTIRKSGAGNIFIKNLDKSID 140 (467)
Q Consensus 113 v~~~~~~~~~~~~~~~~l~v~nlp~~~t 140 (467)
|..... ....++++.+|++.++
T Consensus 78 V~P~~~------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPP------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCC------CCCCCCCCCSCCCCCC
T ss_pred EEcCCC------CCcceEeeecCCCCCC
Confidence 976543 3456899999998875
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.4e-06 Score=61.61 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=65.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceee
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 112 (467)
..++|-+-|||-.+++..|+.+++.+ |.+..|.+..|.. -|+|+|.+..+|-+|.-.|+|..|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 9999999988864 599999999999999988999999999999
Q ss_pred ee
Q 012257 113 IM 114 (467)
Q Consensus 113 v~ 114 (467)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 84
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=1.7e-05 Score=57.22 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=62.6
Q ss_pred CceEEEecCCCCC-CH----HHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEe
Q 012257 321 GLNLYVKNLDDSI-SD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (467)
Q Consensus 321 ~~~l~V~nlp~~~-~~----~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (467)
..+|+|.||+..+ .. +.++++|..|+.+.....++.-. -..|.|.+.++|.+|...||+..++|+.|+|=
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 3479999998755 22 57789999999998888777532 67899999999999999999999999999999
Q ss_pred hhh
Q 012257 396 LAQ 398 (467)
Q Consensus 396 ~~~ 398 (467)
|++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 987
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=4.3e-05 Score=55.15 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=62.3
Q ss_pred cCeEEEcCCCCCC-C--H--HHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeee
Q 012257 39 STSLYVGDLDLSV-N--D--SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (467)
Q Consensus 39 ~~~l~v~nLp~~~-~--e--~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 113 (467)
.++|+|.||+.++ . + +.++++|+.|+++.....++.=+ =..|.|.+.++|.+|...|++..+.|+.+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998854 2 2 46799999999888888776543 3789999999999999999999999999999
Q ss_pred eecc
Q 012257 114 MYSY 117 (467)
Q Consensus 114 ~~~~ 117 (467)
.+..
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9876
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=0.00013 Score=52.36 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=57.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcc-----CCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEE
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSE-----FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~-----~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (467)
...+|.|.|||+.+.++.|.-+|+. -|.|.++..... -|+|+|.+.+.|+++++. ..+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~-------~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC-------GGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT-------EEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC-------cEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 4568999999999999999999976 268999887652 899999999999999873 367888888888
Q ss_pred e
Q 012257 395 A 395 (467)
Q Consensus 395 ~ 395 (467)
.
T Consensus 79 ~ 79 (104)
T 2dhx_A 79 R 79 (104)
T ss_dssp E
T ss_pred E
Confidence 5
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.75 E-value=0.00015 Score=51.50 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=54.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCc--cccEEEEEecChHHHHHHHHHhCCccc
Q 012257 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR--SLGYGYVNYNAAHEATRALDELNFTPL 106 (467)
Q Consensus 40 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~~~~~ 106 (467)
++|.|++||+.++|+++.+.+..+..+........+.+.. ..+-|||.|.+.+++....+.+++..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 6899999999999999999999988766555555443322 225699999999999999999988766
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.70 E-value=0.00014 Score=51.34 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=47.3
Q ss_pred CceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC
Q 012257 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (467)
Q Consensus 321 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 383 (467)
...||+-+.|..+...||.++|+.||.| .|+++.| ..|||.|.+.+.|..|++.+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 3345555999999999999999999976 6788776 289999999999999998764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.67 E-value=0.00032 Score=49.81 Aligned_cols=68 Identities=9% Similarity=0.228 Sum_probs=58.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC---CCccceEEEEcCCHHHHHHHHHHhCCcEecc
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 389 (467)
.+|.|++||+.+||+++.+.++....+.......... .....-|+|.|.+.+++....+.++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 3699999999999999999999999888777766652 1234689999999999999999999999854
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.35 E-value=0.00026 Score=50.27 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=46.7
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 383 (467)
.||+-+.|..+...||.++|+.||.| .|+++.| ..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 34444999999999999999999966 7888886 289999999999999999765
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.31 E-value=0.0009 Score=49.79 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=56.4
Q ss_pred CccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCC-ceeeeee
Q 012257 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG-KPIRIMY 115 (467)
Q Consensus 37 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~~~v~~ 115 (467)
...+-|.|-+.|+. .-+.|.++|++||.|++.... . ......|.|.+..+|++||. .|+..+.| -.|-|.+
T Consensus 22 ~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 34788999999986 477899999999999988762 1 12489999999999999998 68888875 3355544
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.0013 Score=49.02 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=56.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecc-cceEEehh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVALA 397 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~~ 397 (467)
....|.|.+.|... -..|.+.|++||.|.+..... ...+-.|.|++..+|++|+. .||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 45579999999885 677889999999999887622 23499999999999999997 59999975 45666654
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.18 E-value=0.0018 Score=45.80 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=43.9
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
....||+-+.|+.....||.++|+.||.| .|+=+-|. .|||.|.+++.|..|++.+
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 33344444999999999999999999954 44444442 6999999999999999865
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.0012 Score=46.88 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=42.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhC
Q 012257 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (467)
Q Consensus 41 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 102 (467)
.++| +.|+.....||.++|+.||. ..|.=+-| | .|||.|.+++.|..|++.+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 3455 99999999999999999983 34444444 2 69999999999999999764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.88 E-value=0.00042 Score=65.31 Aligned_cols=56 Identities=7% Similarity=0.191 Sum_probs=44.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHH
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 100 (467)
.|+|+|. .|..+++.+|.++|++||+|.++.+.+++. -||.|+|.+.+++..+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 5789998 799999999999999999999999987654 4999999999999988764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.62 E-value=0.0022 Score=45.76 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=48.5
Q ss_pred ccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC-Cc-cccEEEEEecChHHHHHHHHHhCCccc
Q 012257 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RR-SLGYGYVNYNAAHEATRALDELNFTPL 106 (467)
Q Consensus 38 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~-~~-~~g~afV~f~~~~~A~~A~~~l~~~~~ 106 (467)
.+-+|.|+.||+.+||+++.+.+..+=.+........+.+ +. ...-|||.|.+.++.....+..++..|
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 4678999999999999999888876533221111111111 11 114699999999999999999888766
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.60 E-value=0.0041 Score=44.32 Aligned_cols=68 Identities=7% Similarity=0.176 Sum_probs=52.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCC---CCccceEEEEcCCHHHHHHHHHHhCCcEecc
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 389 (467)
-+|.|+.||+.+||+++.+.++..-.+.......... ...-.-|+|.|.+.++...-.+..+|..|.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4699999999999999999888765554333332221 1123579999999999999999999999854
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.23 E-value=0.006 Score=46.01 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=57.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeE-EEEeeCC-------------CC-CccceEEEEcCCHHHHHHHHHHhCCcE
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITS-CKVMRDP-------------NG-ISRGSGFVAFSTAEEASKALTEMNGKM 386 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~-v~i~~~~-------------~~-~~~g~afV~f~~~~~A~~A~~~l~g~~ 386 (467)
..|.|.+.|.... ..+.+.|++||.|.+ +...++. .. ....+.-|+|++..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 3588889976644 567799999999876 2221100 00 124688999999999999997 59999
Q ss_pred ecccceEEehhhhhHH
Q 012257 387 VVSKPLYVALAQRKEE 402 (467)
Q Consensus 387 ~~g~~l~v~~~~~~~~ 402 (467)
|+|.-|-|...++...
T Consensus 86 i~G~mIGV~Py~~~~v 101 (132)
T 3p3d_A 86 FNGVLLGVIPYTKDAV 101 (132)
T ss_dssp ETTEECEEEECCHHHH
T ss_pred eCcEEEEEEECCHHHH
Confidence 9999888887764443
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.84 E-value=0.0049 Score=58.16 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=40.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHH
Q 012257 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380 (467)
Q Consensus 322 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~ 380 (467)
++|+|. .+..+++.+|.++|++||.|.++....+. | .||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-C---eEEEEEeCCHHHHHHHHh
Confidence 479998 68899999999999999999999887652 2 599999999999887764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.70 E-value=0.01 Score=44.71 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=52.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEEec------------CCCC-ccccEEEEEecChHHHHHHHHHhCCc
Q 012257 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVS-VRVCRD------------LSTR-RSLGYGYVNYNAAHEATRALDELNFT 104 (467)
Q Consensus 39 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~-v~i~~~------------~~~~-~~~g~afV~f~~~~~A~~A~~~l~~~ 104 (467)
.+.|.|-+-|+ .....|.++|++||.|.+ +...+. +-.. ...+...|+|++..+|.+|+. .|+.
T Consensus 7 e~~VtVFGFp~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677778866 556788999999998776 211110 0000 123578999999999999998 6999
Q ss_pred ccCCceeeeeec
Q 012257 105 PLNGKPIRIMYS 116 (467)
Q Consensus 105 ~~~g~~~~v~~~ 116 (467)
.|.|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999976666544
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.54 E-value=0.9 Score=43.83 Aligned_cols=54 Identities=26% Similarity=0.400 Sum_probs=45.1
Q ss_pred eEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC
Q 012257 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (467)
Q Consensus 323 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 383 (467)
.+++-..|..+...+|.+.|+.||.| +|+++.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEECCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 34444599999999999999999966 7776665 389999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.92 E-value=1.2 Score=43.08 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCCCCCCccCeEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhC
Q 012257 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (467)
Q Consensus 31 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 102 (467)
.++...++ ..++|+ +|......+|.+.|+.||.| +|.-+-+ ..|||.|.+.++|..+++.+.
T Consensus 433 ~d~~~~R~-~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 433 PDLQPKRD-HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCCCCCGG-GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCCcC-cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34433443 467776 88888999999999999954 5544333 269999999999999999875
No 403
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=82.62 E-value=0.31 Score=46.55 Aligned_cols=10 Identities=0% Similarity=-0.220 Sum_probs=5.4
Q ss_pred CHHHHHHHHh
Q 012257 140 DNKALHDTFS 149 (467)
Q Consensus 140 t~~~l~~~f~ 149 (467)
|-++|.+...
T Consensus 128 Twdel~~~a~ 137 (449)
T 3iot_A 128 TWEEIPALDK 137 (449)
T ss_dssp BGGGHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5556655544
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.94 E-value=4.3 Score=27.30 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=40.6
Q ss_pred CCCCHHHHHHhhccCC-----ceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhCCcEecccceEEehhh
Q 012257 331 DSISDDKLKELFSEFG-----TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (467)
Q Consensus 331 ~~~~~~~l~~~F~~~G-----~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 398 (467)
..+...+|..++..-+ .|-.+++..+ |.||+-.. +.|..++..|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4567777888776554 4556777555 89999876 56888999999999999999987653
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.18 E-value=38 Score=23.12 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=45.5
Q ss_pred ccEEEcCCCCcCCHHHHHHHHhhcCCeEEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHHhcC
Q 012257 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (467)
Q Consensus 128 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~~~~~~~~~g~~~~~afV~f~~~~~A~~a~~~l~~ 190 (467)
+-+.|-|+|..+-+.++.-...-.|--..|..+ .|.|.++|.+.++...|+..|-+
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHh
Confidence 346788999999999998888888866666653 46799999999999999987743
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.27 E-value=68 Score=25.45 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=38.4
Q ss_pred eEEEecCCC-C--------CCHHHHHHhh--ccCCceeEEEEeeCCCCCccceEEEEcCCHHHH
Q 012257 323 NLYVKNLDD-S--------ISDDKLKELF--SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (467)
Q Consensus 323 ~l~V~nlp~-~--------~~~~~l~~~F--~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A 375 (467)
.+.|-|+|. . .+..+|++.| +.|..+ +|+.+.+..| ++|+|.|+|...-..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCChHH
Confidence 577888886 2 3447899977 999877 5777777766 578999999987543
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.90 E-value=63 Score=22.02 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=46.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHh
Q 012257 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (467)
Q Consensus 320 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 382 (467)
..+-|.|-|+|..+-..++.-.....|---.|..+. |.|.|.|.+.++-.-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHH
Confidence 456688999999998888888888888766776654 48999999999999998876
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.14 E-value=44 Score=26.52 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=38.1
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hcCCCeEEEEEEecCCCCccccEEEEEecChHH-HHHHHH
Q 012257 41 SLYVGDLDL-S--------VNDSQLYDLF--NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE-ATRALD 99 (467)
Q Consensus 41 ~l~v~nLp~-~--------~~e~~l~~~f--~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~A~~ 99 (467)
.+.|-|+|. . .+.++|++.| +.|.++ .|+.+.... .+.|+|.|.|.+.-+ -..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 456778776 2 3447899977 999886 466666543 377899999977544 344444
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.46 E-value=49 Score=21.83 Aligned_cols=58 Identities=10% Similarity=0.256 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHhcCC-----CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHhCCcccCCceeeeeec
Q 012257 50 SVNDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (467)
Q Consensus 50 ~~~e~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 116 (467)
.+...+|..++..-+ .|-.|.+..+ |.||+-.. +.|.++++.++...+.|+.++++.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 355567777666543 5677777432 67888654 4577888889888999999988654
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.54 E-value=91 Score=21.44 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=40.1
Q ss_pred EcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHHh
Q 012257 44 VGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (467)
Q Consensus 44 v~nLp~~~~e~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 101 (467)
+-.+...++..+|++.++. || .|..|....-+. |. --|||.+....+|......+
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~--KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GE--KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SC--EEEEEEECTTSCHHHHHHHS
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cc--eEEEEEcCCCCcHHHHHHhh
Confidence 3335678999999998876 56 788887776542 21 25999999999988876654
No 411
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=29.84 E-value=1.3e+02 Score=21.46 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhc-CC---C-eEEEEEEecCCCCccccEEEEEecChHHHHHHH
Q 012257 49 LSVNDSQLYDLFNQ-MG---Q-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98 (467)
Q Consensus 49 ~~~~e~~l~~~f~~-~G---~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 98 (467)
...+..+|++.+.. |+ . |.=..+...-..|++.|||.| |+|.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56777888876654 44 2 322233334445678888877 67777666543
No 412
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=29.74 E-value=1.3e+02 Score=21.43 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhcC-C---C-eEEEEEEecCCCCccccEEEEEecChHHHHH
Q 012257 49 LSVNDSQLYDLFNQM-G---Q-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96 (467)
Q Consensus 49 ~~~~e~~l~~~f~~~-G---~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (467)
...+..+|++.+... + . |.=..+...-..|++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567778888766543 3 2 332333344445678889877 777777754
No 413
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=28.97 E-value=1.2e+02 Score=21.89 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHhc-CC---CeEEE-EEEecCCCCccccEEEEEecChHHHHH
Q 012257 49 LSVNDSQLYDLFNQ-MG---QVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATR 96 (467)
Q Consensus 49 ~~~~e~~l~~~f~~-~G---~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (467)
...+..+|++.+.. |+ .+.-| .+...-..|++.|||.| |+|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677888776643 34 22222 23334445678889877 777777765
No 414
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=28.27 E-value=1.6e+02 Score=25.12 Aligned_cols=49 Identities=16% Similarity=0.391 Sum_probs=40.7
Q ss_pred cCeEEEcCCCC-CCCHHHHHHHHhcC-------CCeEEEEEEecCCCCccccEEEEE
Q 012257 39 STSLYVGDLDL-SVNDSQLYDLFNQM-------GQVVSVRVCRDLSTRRSLGYGYVN 87 (467)
Q Consensus 39 ~~~l~v~nLp~-~~~e~~l~~~f~~~-------G~v~~v~i~~~~~~~~~~g~afV~ 87 (467)
++.+-|..+.. .++||+|...+++| +++-.+.+...+..||+.-|.|..
T Consensus 166 TTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 166 TTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp SEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred hheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 36688888887 56899999999987 378889998888899998888864
No 415
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.00 E-value=96 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCCccccEEEEEecC
Q 012257 65 QVVSVRVCRDLSTRRSLGYGYVNYNA 90 (467)
Q Consensus 65 ~v~~v~i~~~~~~~~~~g~afV~f~~ 90 (467)
.|++|++.+-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998877778889999999974
No 416
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.74 E-value=1.4e+02 Score=20.45 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=38.7
Q ss_pred EcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEecCCCCccccEEEEEecChHHHHHHHHH
Q 012257 44 VGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (467)
Q Consensus 44 v~nLp~~~~e~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 100 (467)
+-.+..+++.-+|++.++. || .|..|....-+.. .--|||.+...++|......
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~---~KKA~VtL~~g~~aid~~~k 81 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG---EKKAVVRLSEDDDAQEVASR 81 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS---SEEEEEEECTTSCHHHHHTT
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCC---ceEEEEEECCCCcHHHHHHh
Confidence 3345688999999988875 46 7888887765432 12599999988887665543
No 417
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.31 E-value=24 Score=22.68 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=12.7
Q ss_pred CceeEEEEeeCCCCCccceEEEEcCC
Q 012257 346 GTITSCKVMRDPNGISRGSGFVAFST 371 (467)
Q Consensus 346 G~v~~v~i~~~~~~~~~g~afV~f~~ 371 (467)
|+|.+|.. .+..|+|.|.|
T Consensus 28 GtV~kV~~-------~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDS-------AREVCLVQFED 46 (68)
T ss_dssp EEEEEEET-------TTTEEEEEETT
T ss_pred eEEEEEec-------CCcEEEEEEcc
Confidence 56665542 24589999987
No 418
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.75 E-value=60 Score=32.41 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHhh----ccCCceeEEEEeeCCCCCccceEEEEcCCHHHHHHHHHHhC
Q 012257 330 DDSISDDKLKELF----SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (467)
Q Consensus 330 p~~~~~~~l~~~F----~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 383 (467)
+...+--||.++| ..+|.|.++.+..-+....+..+++.|.+.++|.+++..+-
T Consensus 352 ~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 352 PRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp SSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 4444445788888 36799999877655444456689999999999999988764
No 419
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.56 E-value=1.2e+02 Score=21.57 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCCccccEEEEEecC
Q 012257 65 QVVSVRVCRDLSTRRSLGYGYVNYNA 90 (467)
Q Consensus 65 ~v~~v~i~~~~~~~~~~g~afV~f~~ 90 (467)
.|++|+|.+-...|+-+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68899998877778889999999864
No 420
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=20.85 E-value=86 Score=19.89 Aligned_cols=22 Identities=5% Similarity=0.306 Sum_probs=17.7
Q ss_pred EEEEeeCCCCCccceEEEEcCC
Q 012257 350 SCKVMRDPNGISRGSGFVAFST 371 (467)
Q Consensus 350 ~v~i~~~~~~~~~g~afV~f~~ 371 (467)
.++++.+....+.|+++|.|++
T Consensus 21 ~arlllnrRps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRRPPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBCCSSTTEEEEEETT
T ss_pred hhhhhhccCCCcCceEEEEEec
Confidence 5677777666678999999998
No 421
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.70 E-value=1.3e+02 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCCccccEEEEEecC
Q 012257 65 QVVSVRVCRDLSTRRSLGYGYVNYNA 90 (467)
Q Consensus 65 ~v~~v~i~~~~~~~~~~g~afV~f~~ 90 (467)
.|++|+|.+-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 68899998877778889999999963
No 422
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.59 E-value=31 Score=22.84 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=12.9
Q ss_pred CceeEEEEeeCCCCCccceEEEEcCC
Q 012257 346 GTITSCKVMRDPNGISRGSGFVAFST 371 (467)
Q Consensus 346 G~v~~v~i~~~~~~~~~g~afV~f~~ 371 (467)
|+|.+|... ++.|+|.|.|
T Consensus 45 GTI~kV~~~-------~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSA-------REVCLVQFED 63 (79)
T ss_dssp EEEEEEETT-------TTEEEEEETT
T ss_pred EEEEEeccC-------CCEEEEEEcC
Confidence 677665432 3489999987
No 423
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.50 E-value=2.8e+02 Score=20.90 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhc-CC---CeEEEE-EEecCCCCccccEEEEEecChHHHHH
Q 012257 49 LSVNDSQLYDLFNQ-MG---QVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATR 96 (467)
Q Consensus 49 ~~~~e~~l~~~f~~-~G---~v~~v~-i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (467)
...+..||++.+.. |+ .+.-|. +...-..|.+.|||.| |+|.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 45778899987754 45 222222 3334445667788887 777777754
Done!