Query 012260
Match_columns 467
No_of_seqs 616 out of 5004
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 00:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-42 2.6E-47 388.5 29.7 348 31-406 27-393 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-35 3.3E-40 331.3 23.7 290 106-406 128-417 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.3E-37 1.2E-41 299.2 3.1 335 85-437 123-486 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.4E-30 9.5E-35 251.1 5.6 303 88-408 79-407 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.8E-29 4E-34 248.3 -2.0 285 110-410 93-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.5E-29 3.2E-34 249.0 -2.9 290 108-413 43-359 (1255)
7 KOG4237 Extracellular matrix p 99.9 8.2E-29 1.8E-33 232.3 -1.4 295 138-439 60-393 (498)
8 KOG0472 Leucine-rich repeat pr 99.9 3.6E-27 7.7E-32 221.7 -3.3 114 288-406 428-541 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 4.4E-27 9.6E-32 221.1 -9.8 254 109-381 57-310 (565)
10 PRK15387 E3 ubiquitin-protein 99.9 3.5E-21 7.7E-26 203.3 15.9 245 110-406 214-458 (788)
11 PLN03210 Resistant to P. syrin 99.9 2.1E-20 4.5E-25 210.8 22.4 272 110-404 602-904 (1153)
12 PRK15370 E3 ubiquitin-protein 99.9 2.9E-21 6.2E-26 205.1 14.0 249 121-407 178-429 (754)
13 PLN03210 Resistant to P. syrin 99.8 4.4E-20 9.6E-25 208.2 22.0 274 109-405 577-881 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 1.8E-20 4E-25 197.9 17.0 245 86-388 221-465 (788)
15 KOG4237 Extracellular matrix p 99.8 6.2E-23 1.3E-27 193.0 -2.0 269 107-382 77-360 (498)
16 cd00116 LRR_RI Leucine-rich re 99.8 7.5E-22 1.6E-26 193.2 4.5 256 149-405 23-319 (319)
17 KOG0618 Serine/threonine phosp 99.8 1.5E-22 3.3E-27 208.2 -0.5 246 149-406 241-489 (1081)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-20 3E-25 199.9 14.3 246 88-381 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 9.4E-21 2E-25 185.5 5.0 263 114-380 16-319 (319)
20 KOG0618 Serine/threonine phosp 99.8 6.3E-21 1.4E-25 196.3 -2.8 246 120-379 240-487 (1081)
21 KOG0617 Ras suppressor protein 99.8 1E-20 2.2E-25 159.3 -2.9 166 194-366 29-194 (264)
22 KOG0617 Ras suppressor protein 99.8 1.3E-20 2.7E-25 158.7 -5.5 184 217-408 28-214 (264)
23 PLN03150 hypothetical protein; 99.6 7.1E-15 1.5E-19 155.6 14.2 155 28-209 367-526 (623)
24 PLN03150 hypothetical protein; 99.5 3.3E-13 7.2E-18 142.9 11.6 114 296-410 419-532 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 1.7E-14 3.7E-19 142.2 -3.9 197 171-379 72-271 (722)
26 COG4886 Leucine-rich repeat (L 99.4 7E-13 1.5E-17 133.8 7.0 200 153-364 97-297 (394)
27 KOG0532 Leucine-rich repeat (L 99.4 4.5E-14 9.8E-19 139.3 -2.0 195 149-355 75-271 (722)
28 COG4886 Leucine-rich repeat (L 99.3 1.2E-12 2.6E-17 132.1 7.0 175 197-381 115-290 (394)
29 KOG1909 Ran GTPase-activating 99.2 8.9E-12 1.9E-16 116.7 3.3 185 196-380 90-310 (382)
30 KOG3207 Beta-tubulin folding c 99.2 5.2E-12 1.1E-16 121.4 1.1 208 118-332 118-339 (505)
31 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.3E-16 113.9 1.8 140 236-383 274-414 (490)
32 KOG1259 Nischarin, modulator o 99.1 8.5E-12 1.8E-16 114.5 -0.4 134 192-332 278-412 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 6.3E-11 1.4E-15 104.0 4.7 57 175-235 20-77 (175)
34 KOG1909 Ran GTPase-activating 99.1 1.5E-11 3.3E-16 115.2 0.7 184 172-356 90-310 (382)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.5E-15 102.4 6.0 16 342-357 111-126 (175)
36 KOG3207 Beta-tubulin folding c 99.1 3E-11 6.6E-16 116.2 1.8 209 171-382 118-340 (505)
37 KOG0531 Protein phosphatase 1, 98.9 6.6E-11 1.4E-15 120.0 -2.6 246 119-385 70-322 (414)
38 KOG0531 Protein phosphatase 1, 98.9 1E-10 2.2E-15 118.6 -1.7 241 149-406 72-318 (414)
39 KOG1859 Leucine-rich repeat pr 98.9 8.6E-11 1.9E-15 119.3 -3.2 202 197-410 83-296 (1096)
40 KOG4658 Apoptotic ATPase [Sign 98.9 7.6E-10 1.6E-14 120.3 3.6 39 343-381 769-807 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.9 3.1E-09 6.8E-14 115.5 7.5 239 109-359 559-809 (889)
42 PF13855 LRR_8: Leucine rich r 98.8 2.5E-09 5.5E-14 77.2 3.2 59 175-233 2-60 (61)
43 PF13855 LRR_8: Leucine rich r 98.8 6.1E-09 1.3E-13 75.2 3.5 61 149-210 1-61 (61)
44 KOG1859 Leucine-rich repeat pr 98.7 3.9E-10 8.5E-15 114.7 -7.5 180 113-308 102-292 (1096)
45 KOG4579 Leucine-rich repeat (L 98.5 9.7E-09 2.1E-13 84.1 -1.0 134 272-410 29-163 (177)
46 COG5238 RNA1 Ran GTPase-activa 98.4 2.1E-07 4.5E-12 85.0 4.1 165 194-358 88-286 (388)
47 KOG4579 Leucine-rich repeat (L 98.4 5E-08 1.1E-12 80.0 -0.8 89 296-388 78-166 (177)
48 KOG2120 SCF ubiquitin ligase, 98.3 7.2E-08 1.6E-12 89.0 -1.9 220 151-378 138-373 (419)
49 KOG2120 SCF ubiquitin ligase, 98.3 6.1E-08 1.3E-12 89.5 -2.5 196 174-371 185-390 (419)
50 KOG2982 Uncharacterized conser 98.3 6.6E-07 1.4E-11 82.7 3.7 215 170-384 41-265 (418)
51 KOG2982 Uncharacterized conser 98.2 7E-07 1.5E-11 82.6 2.4 110 122-234 46-158 (418)
52 PF08263 LRRNT_2: Leucine rich 98.2 2.3E-06 4.9E-11 56.7 3.9 37 32-70 2-43 (43)
53 COG5238 RNA1 Ran GTPase-activa 98.1 3.1E-06 6.7E-11 77.5 5.5 236 171-406 27-316 (388)
54 PRK15386 type III secretion pr 98.1 9.8E-06 2.1E-10 80.0 8.9 137 118-281 49-188 (426)
55 KOG3665 ZYG-1-like serine/thre 98.0 3.2E-06 7E-11 90.0 2.8 134 149-284 122-264 (699)
56 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 54.6 3.1 36 345-381 2-37 (44)
57 PRK15386 type III secretion pr 97.9 3.3E-05 7.1E-10 76.4 7.2 136 170-329 48-187 (426)
58 KOG3665 ZYG-1-like serine/thre 97.9 9.9E-06 2.1E-10 86.4 3.7 107 174-282 122-232 (699)
59 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 52.4 3.2 36 320-357 2-37 (44)
60 KOG1644 U2-associated snRNP A' 97.7 4.3E-05 9.4E-10 67.2 4.3 58 199-258 43-100 (233)
61 TIGR00864 PCC polycystin catio 97.5 2.2E-05 4.8E-10 91.9 0.3 68 374-442 1-73 (2740)
62 KOG1644 U2-associated snRNP A' 97.5 0.00012 2.5E-09 64.5 4.5 102 271-377 43-149 (233)
63 PF13306 LRR_5: Leucine rich r 97.5 0.0003 6.6E-09 58.6 6.7 81 170-254 31-111 (129)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00047 1E-08 57.5 6.2 127 112-249 3-129 (129)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00016 3.5E-09 66.2 1.3 38 197-234 64-103 (260)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.8E-09 64.8 2.4 62 196-259 41-104 (260)
67 KOG2123 Uncharacterized conser 97.0 8.8E-05 1.9E-09 68.3 -1.7 101 221-325 18-123 (388)
68 KOG4341 F-box protein containi 96.9 6.1E-05 1.3E-09 73.1 -4.1 111 268-378 318-436 (483)
69 KOG2123 Uncharacterized conser 96.7 0.00029 6.2E-09 65.1 -1.3 97 273-374 22-123 (388)
70 KOG4341 F-box protein containi 96.0 0.00068 1.5E-08 66.0 -2.7 255 118-374 161-458 (483)
71 KOG4308 LRR-containing protein 95.8 0.00022 4.8E-09 73.0 -7.6 183 175-357 88-303 (478)
72 KOG4308 LRR-containing protein 95.2 0.00061 1.3E-08 69.8 -6.9 205 151-356 89-330 (478)
73 smart00082 LRRCT Leucine rich 95.1 0.0029 6.2E-08 43.4 -1.5 34 403-436 1-38 (51)
74 PF00560 LRR_1: Leucine Rich R 94.9 0.013 2.7E-07 32.4 1.0 9 151-159 2-10 (22)
75 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.8E-07 32.4 0.8 19 176-195 2-20 (22)
76 KOG1947 Leucine rich repeat pr 94.6 0.0081 1.8E-07 62.0 -0.5 31 340-370 358-389 (482)
77 PF13504 LRR_7: Leucine rich r 93.0 0.056 1.2E-06 27.7 1.2 13 369-381 2-14 (17)
78 KOG1947 Leucine rich repeat pr 92.4 0.064 1.4E-06 55.3 1.7 133 220-353 186-330 (482)
79 KOG0473 Leucine-rich repeat pr 90.5 0.012 2.6E-07 53.3 -5.1 85 267-356 39-123 (326)
80 KOG0473 Leucine-rich repeat pr 89.6 0.0075 1.6E-07 54.5 -7.1 84 170-256 38-121 (326)
81 smart00370 LRR Leucine-rich re 89.5 0.36 7.7E-06 27.6 2.3 13 345-357 3-15 (26)
82 smart00369 LRR_TYP Leucine-ric 89.5 0.36 7.7E-06 27.6 2.3 13 345-357 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 88.4 0.45 9.8E-06 27.2 2.2 19 368-387 2-20 (26)
84 smart00370 LRR Leucine-rich re 88.4 0.45 9.8E-06 27.2 2.2 19 368-387 2-20 (26)
85 KOG3864 Uncharacterized conser 81.9 0.29 6.4E-06 43.6 -1.0 34 344-377 151-185 (221)
86 KOG3864 Uncharacterized conser 79.9 0.3 6.6E-06 43.5 -1.6 64 118-183 122-185 (221)
87 PF13516 LRR_6: Leucine Rich r 79.6 0.62 1.3E-05 26.0 0.1 11 297-307 4-14 (24)
88 smart00364 LRR_BAC Leucine-ric 78.1 1.5 3.2E-05 25.2 1.3 18 368-386 2-19 (26)
89 PF07172 GRP: Glycine rich pro 76.8 1.1 2.3E-05 35.1 0.7 23 1-23 1-23 (95)
90 KOG4242 Predicted myosin-I-bin 71.5 18 0.0004 36.6 7.9 60 175-234 215-280 (553)
91 smart00365 LRR_SD22 Leucine-ri 70.8 3.6 7.8E-05 23.7 1.8 14 344-357 2-15 (26)
92 smart00368 LRR_RI Leucine rich 63.5 5.9 0.00013 23.1 1.7 14 344-357 2-15 (28)
93 KOG3763 mRNA export factor TAP 60.2 6.2 0.00013 40.7 2.3 65 293-359 216-285 (585)
94 KOG3763 mRNA export factor TAP 58.4 6.6 0.00014 40.5 2.2 84 267-350 215-307 (585)
95 TIGR00864 PCC polycystin catio 40.7 31 0.00067 42.8 4.2 32 325-357 1-32 (2740)
96 smart00367 LRR_CC Leucine-rich 33.6 27 0.00059 19.6 1.2 15 149-163 2-16 (26)
97 KOG4242 Predicted myosin-I-bin 23.0 1.4E+02 0.0031 30.5 4.9 36 319-354 354-390 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-42 Score=388.45 Aligned_cols=348 Identities=31% Similarity=0.455 Sum_probs=250.4
Q ss_pred CHHHHHHHHHHHHhcCCC----CCCCCCCCCCCCCCCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCC---
Q 012260 31 SSLEQDSVYQVLDSVNPT----IHWRSLFPDDLCSSPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPN--- 103 (467)
Q Consensus 31 ~~~~~~all~~~~~~~~~----~~W~~~~~~~C~~~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~--- 103 (467)
+++|++||++||+++.++ .+|+.. ++|| .|.||+|+. .++|+.|+|++....+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~--~~~c--~w~gv~c~~--------------~~~v~~L~L~~~~i~~~~~~~ 88 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS--ADVC--LWQGITCNN--------------SSRVVSIDLSGKNISGKISSA 88 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC--CCCC--cCcceecCC--------------CCcEEEEEecCCCccccCChH
Confidence 568999999999998643 368543 5677 599999986 368999988753211100
Q ss_pred ------------CCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhc
Q 012260 104 ------------PPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIG 171 (467)
Q Consensus 104 ------------~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~ 171 (467)
..+...|.+|+.+|..+++|++|+|++|.+.+ .+|. +.+ ++|++|++++| .+.+.+|..++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~--~~p~---~~l-~~L~~L~Ls~n-~~~~~~p~~~~ 161 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--SIPR---GSI-PNLETLDLSNN-MLSGEIPNDIG 161 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc--ccCc---ccc-CCCCEEECcCC-cccccCChHHh
Confidence 11233455666665566666666666665543 4443 234 66777777777 67777777777
Q ss_pred CCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEE
Q 012260 172 SFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKL 251 (467)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 251 (467)
++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..++++++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred EccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCC
Q 012260 252 DLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGL 331 (467)
Q Consensus 252 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 331 (467)
++++|.+++.+|..++++++|++|++++|++++ .+|..+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeec-cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 777777777777777777777777777777776 6677777777777777777777777777777777777777777777
Q ss_pred CCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 332 VGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 332 ~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
++.+|..+. .+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.....+ +.+++++|+..
T Consensus 321 ~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L-~~L~l~~n~l~ 393 (968)
T PLN00113 321 TGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL-FKLILFSNSLE 393 (968)
T ss_pred CCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC-CEEECcCCEec
Confidence 777777776 77778888888887777777777777778888888888777777665544433 67777777653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-35 Score=331.31 Aligned_cols=290 Identities=30% Similarity=0.442 Sum_probs=270.6
Q ss_pred CCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCC
Q 012260 106 CNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNG 185 (467)
Q Consensus 106 ~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~ 185 (467)
++..|.+|. ..+++|++|+|++|.+.+ .+|..+ +++ ++|++|++++| .+.+.+|..++++++|++|++++|+
T Consensus 128 n~l~~~~p~---~~l~~L~~L~Ls~n~~~~--~~p~~~-~~l-~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 128 NNFTGSIPR---GSIPNLETLDLSNNMLSG--EIPNDI-GSF-SSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred CccccccCc---cccCCCCEEECcCCcccc--cCChHH-hcC-CCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC
Confidence 345566665 568999999999998876 788888 899 99999999999 9999999999999999999999999
Q ss_pred CCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcccc
Q 012260 186 VYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPES 265 (467)
Q Consensus 186 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 265 (467)
+.+.+|..++++++|++|++++|++++.+|..+.++++|++|++++|.+++.+|..++++++|++|++++|++++.+|..
T Consensus 200 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccC
Q 012260 266 LGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKK 345 (467)
Q Consensus 266 ~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 345 (467)
+.++++|++|++++|.+.+ .+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+. .+++
T Consensus 280 l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~ 357 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNN 357 (968)
T ss_pred HhhccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCC
Confidence 9999999999999999998 7899999999999999999999999999999999999999999999999999988 8999
Q ss_pred CCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 346 LSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 346 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.....+ +.+++++|+..
T Consensus 358 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L-~~L~L~~n~l~ 417 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL-RRVRLQDNSFS 417 (968)
T ss_pred CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC-CEEECcCCEee
Confidence 9999999999999999999999999999999999999999877665555 89999999764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-37 Score=299.22 Aligned_cols=335 Identities=21% Similarity=0.185 Sum_probs=232.0
Q ss_pred ccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCccc
Q 012260 85 ETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVG 164 (467)
Q Consensus 85 ~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~ 164 (467)
..+|++.|+|. .|...++..+-+..++.||+|||+.|.+. .||..-|..= .++++|+|++| .++.
T Consensus 123 ~sghl~~L~L~----------~N~I~sv~se~L~~l~alrslDLSrN~is---~i~~~sfp~~-~ni~~L~La~N-~It~ 187 (873)
T KOG4194|consen 123 ESGHLEKLDLR----------HNLISSVTSEELSALPALRSLDLSRNLIS---EIPKPSFPAK-VNIKKLNLASN-RITT 187 (873)
T ss_pred cccceeEEeee----------ccccccccHHHHHhHhhhhhhhhhhchhh---cccCCCCCCC-CCceEEeeccc-cccc
Confidence 46788888887 35666676665588888888888888776 5554332222 47888888888 7777
Q ss_pred ccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCc------------------------ccccccC
Q 012260 165 PLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGG------------------------FSFSLDK 220 (467)
Q Consensus 165 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~------------------------~p~~l~~ 220 (467)
.-...|.++.+|.+|.|++|+++...+..|.++++|+.|+|..|++.-. ....|..
T Consensus 188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 6666777777777888888877776677777777777777777766532 2334455
Q ss_pred CCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEE
Q 012260 221 LKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREV 300 (467)
Q Consensus 221 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L 300 (467)
+.++++|+|..|+++..-..++.++++|+.|++++|.+....+++|...++|++|+|++|+++. -.+..|..+..|+.|
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEEL 346 (873)
T ss_pred ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhh
Confidence 5566666666666665555566667777777777777766666777777777777777777776 445566667777777
Q ss_pred eccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCch--HHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCC
Q 012260 301 YLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPA--SMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENN 378 (467)
Q Consensus 301 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 378 (467)
.|++|++...-...|..+++|++|||++|.+++.|.+ ..+.++++|+.|+|.+|++..+.-.+|.+++.|++|||.+|
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 7777777655556677777777888888877765443 22336778888888888887555577888888888888888
Q ss_pred cccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCCCCCCCc---ccCCCCCCCccc
Q 012260 379 NLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASGSIGQL---KLCKKPDNPKAA 437 (467)
Q Consensus 379 ~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~---~~C~~p~~~~g~ 437 (467)
.+...-|..+... .+ ++|-+..-.++|||++.|+..|......+. ..|++|+...|.
T Consensus 427 aiaSIq~nAFe~m-~L-k~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~ 486 (873)
T KOG4194|consen 427 AIASIQPNAFEPM-EL-KELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQ 486 (873)
T ss_pred cceeecccccccc-hh-hhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccc
Confidence 8774334433332 33 677777777899999999877554433333 789999999884
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=4.4e-30 Score=251.05 Aligned_cols=303 Identities=20% Similarity=0.188 Sum_probs=226.5
Q ss_pred eeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccc
Q 012260 88 HITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLG 167 (467)
Q Consensus 88 ~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p 167 (467)
.+..|+++ +|-...+....|.++++|+.+++..|.+. .||... +.. .+|+.|+|.+| .++..-.
T Consensus 79 ~t~~Ldls----------nNkl~~id~~~f~nl~nLq~v~l~~N~Lt---~IP~f~-~~s-ghl~~L~L~~N-~I~sv~s 142 (873)
T KOG4194|consen 79 QTQTLDLS----------NNKLSHIDFEFFYNLPNLQEVNLNKNELT---RIPRFG-HES-GHLEKLDLRHN-LISSVTS 142 (873)
T ss_pred ceeeeecc----------ccccccCcHHHHhcCCcceeeeeccchhh---hccccc-ccc-cceeEEeeecc-ccccccH
Confidence 45556666 45677888888899999999999999887 788876 555 67888888888 7776666
Q ss_pred hhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCC
Q 012260 168 GIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTN 247 (467)
Q Consensus 168 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 247 (467)
.++..++.|++|||+.|.|+...-..|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++...+..|.++++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 67777777777777777776555555555566777777777766666666666666666666666666444455555666
Q ss_pred CCEEEccCCcCC------------------------CCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEecc
Q 012260 248 LLKLDLSSNVCS------------------------GKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLS 303 (467)
Q Consensus 248 L~~L~L~~n~l~------------------------~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 303 (467)
|+.|+|..|++. ..-...|..+.++++|+|+.|+++. .-..++.++++|+.|+|+
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-hhcccccccchhhhhccc
Confidence 666666666543 3334455666677777777777766 334567788999999999
Q ss_pred CccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccccc
Q 012260 304 GNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGR 383 (467)
Q Consensus 304 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 383 (467)
+|.|....++.+.-.++|++|+|++|+++ .+++.-+..+..|++|+|++|+++..-...|..+++|+.|||++|.+++.
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 99999888888999999999999999999 66655555899999999999999977778899999999999999999988
Q ss_pred CCCCcccc--cccCCeeeecCCCCCCc
Q 012260 384 VPFSAKFS--TKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 384 ip~~~~~~--~~~~~~l~l~~Np~~C~ 408 (467)
|....... ...+++|++.||...--
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred EecchhhhccchhhhheeecCceeeec
Confidence 87653322 22347899999986543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.8e-29 Score=248.27 Aligned_cols=285 Identities=26% Similarity=0.317 Sum_probs=236.0
Q ss_pred cccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC
Q 012260 110 STLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 110 g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
+.||+++ .++..|..|||++|.+. .+|..+ ..- +++-.|+|++| ++......-|.+++.|-.|||++|++ ..
T Consensus 93 sGiP~di-F~l~dLt~lDLShNqL~---EvP~~L-E~A-Kn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL-e~ 164 (1255)
T KOG0444|consen 93 SGIPTDI-FRLKDLTILDLSHNQLR---EVPTNL-EYA-KNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL-EM 164 (1255)
T ss_pred CCCCchh-cccccceeeecchhhhh---hcchhh-hhh-cCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh-hh
Confidence 4578888 78888888888888877 788777 666 78888888888 77653334566888888888888888 56
Q ss_pred cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCC-CCchhhhhCCCCCCEEEccCCcCCCCccccccC
Q 012260 190 IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFD-GNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGH 268 (467)
Q Consensus 190 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 268 (467)
+|..+..+..|++|+|++|.+....-..+..+++|+.|++++.+-+ ..+|.++..+.+|+.+|++.|.+. .+|+.+.+
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 6777888888888888888776444444556777888888876543 357888889999999999999997 88999999
Q ss_pred CCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCC-CCCchHHHhcccCCC
Q 012260 269 LKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLV-GKIPASMGIHLKKLS 347 (467)
Q Consensus 269 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~~~~~l~~L~ 347 (467)
+++|+.|+|++|+++. +....+.+.+|+.|+|+.|+++ .+|..+..+++|+.|.+.+|+++ .-||..++ .+.+|+
T Consensus 244 l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG-KL~~Le 319 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG-KLIQLE 319 (1255)
T ss_pred hhhhheeccCcCceee--eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh-hhhhhH
Confidence 9999999999999987 3344567889999999999998 88999999999999999999876 36899998 899999
Q ss_pred EEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCc
Q 012260 348 YLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 348 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
++..++|++. .+|+.++.|..|+.|.|+.|++- ++|..+.....+ +.||+.+||.+--.+
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l-~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL-KVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc-ceeeccCCcCccCCC
Confidence 9999999998 89999999999999999999998 999999877766 899999999887665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.5e-29 Score=248.96 Aligned_cols=290 Identities=26% Similarity=0.309 Sum_probs=212.9
Q ss_pred CCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcc-cccchhhcCCCCCCEEEeecCCC
Q 012260 108 ANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFV-GPLGGIIGSFTNLRRLVLTGNGV 186 (467)
Q Consensus 108 ~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l 186 (467)
-...+|.++ +.+.+|++|.+++|.+. .+-..+ ..+ +.|+.+++..| ++. .-||..+..+..|+.|||++|++
T Consensus 43 ~L~~vPeEL-~~lqkLEHLs~~HN~L~---~vhGEL-s~L-p~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 43 KLEQVPEEL-SRLQKLEHLSMAHNQLI---SVHGEL-SDL-PRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQL 115 (1255)
T ss_pred hhhhChHHH-HHHhhhhhhhhhhhhhH---hhhhhh-ccc-hhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhh
Confidence 356788888 99999999999998876 566666 777 88999999988 664 34888888899999999999998
Q ss_pred CCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCC------
Q 012260 187 YGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSG------ 260 (467)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------ 260 (467)
...|..+..-+++-.|+||+|+|..+...-|.+++.|-.|||++|++. .+|+.+..+..|++|.|++|.+..
T Consensus 116 -~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 116 -REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred -hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 667888888889999999999998555556778899999999999988 677778888888999998886542
Q ss_pred -------------------CccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCC
Q 012260 261 -------------------KIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGI 321 (467)
Q Consensus 261 -------------------~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 321 (467)
.+|.++..+.+|..+|++.|++.. .|+.+-++++|+.|+|++|+++ .+....+.+.+|
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l 270 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL 270 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCcee-eeeccHHHHhhh
Confidence 355555666666666666666665 5666666666777777777666 333334455666
Q ss_pred cEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCC-CCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeee
Q 012260 322 VGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQG-NVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKL 400 (467)
Q Consensus 322 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l 400 (467)
++|++|+|+++ .+|..+. .+++|+.|++.+|+++- -+|..++.+.+|+.+..++|.+. .+|.++....++ ++|.|
T Consensus 271 EtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL-~kL~L 346 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL-QKLKL 346 (1255)
T ss_pred hhhccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH-HHhcc
Confidence 67777777776 6777666 67777777777776652 36667777777777777777776 677776666555 66777
Q ss_pred cCCCCCCcCcccc
Q 012260 401 KGNPDLCIDEKFS 413 (467)
Q Consensus 401 ~~Np~~C~c~~~~ 413 (467)
+.|...--.+-++
T Consensus 347 ~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 347 DHNRLITLPEAIH 359 (1255)
T ss_pred cccceeechhhhh
Confidence 7776655544333
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=8.2e-29 Score=232.34 Aligned_cols=295 Identities=21% Similarity=0.205 Sum_probs=205.4
Q ss_pred CCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccC-CcCCCcccc
Q 012260 138 PVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSR-NKLSGGFSF 216 (467)
Q Consensus 138 ~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~ 216 (467)
++|..+| +.-.+++|..| .++...|.+|+.+++|+.|||++|+|+.+-|++|.++++|..|.+.+ |+|+.....
T Consensus 60 eVP~~LP----~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 60 EVPANLP----PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cCcccCC----CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 5666664 55667777777 77766666777777777777777777777777777777776665555 777755556
Q ss_pred cccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCC-----------
Q 012260 217 SLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNF----------- 285 (467)
Q Consensus 217 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~----------- 285 (467)
.|.++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+...--.+|..+..++.+.+..|.+-..
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 777777777777777777766667777777777777777777633333666777777777666652100
Q ss_pred ChhHHhhcCc----------------------CCcEE---eccCccCCCCch-hHhhcCCCCcEEeccCCCCCCCCchHH
Q 012260 286 GVPTFLAEMD----------------------KLREV---YLSGNFLGGEIP-EIWESLGGIVGIGLSGTGLVGKIPASM 339 (467)
Q Consensus 286 ~~p~~~~~l~----------------------~L~~L---~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 339 (467)
..|..++... .++.+ ..+.+...++-| ..|..+++|++|+|++|++++.-+.++
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 0111111111 11111 111222222333 458889999999999999995555555
Q ss_pred HhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCC
Q 012260 340 GIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNAS 419 (467)
Q Consensus 340 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~ 419 (467)
. +...++.|+|..|++...-...|.++..|+.|+|.+|+|+...|-.+.....+ .++++-+|||.|+|.+.|+.+|..
T Consensus 295 e-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l-~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 295 E-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL-STLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred c-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee-eeeehccCcccCccchHHHHHHHh
Confidence 4 99999999999999997777889999999999999999996666555444444 899999999999999999888654
Q ss_pred CC-CCCcccCCCCCCCccccc
Q 012260 420 GS-IGQLKLCKKPDNPKAAMF 439 (467)
Q Consensus 420 ~~-~~~~~~C~~p~~~~g~~~ 439 (467)
+. ......|+.|...++.-.
T Consensus 373 ~~~~~~~~~Cq~p~~~~~~~~ 393 (498)
T KOG4237|consen 373 KKSVVGNPRCQSPGFVRQIPI 393 (498)
T ss_pred hCCCCCCCCCCCCchhccccc
Confidence 33 444479999988887433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.6e-27 Score=221.72 Aligned_cols=114 Identities=28% Similarity=0.385 Sum_probs=81.7
Q ss_pred hHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCC
Q 012260 288 PTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVL 367 (467)
Q Consensus 288 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 367 (467)
|..+..+++|..|+|++|-+. .+|..++.+..|+.|+++.|+|. .+|..+. .+..++.+-.++|++....|..+.++
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y-~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY-ELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh-hHHHHHHHHhccccccccChHHhhhh
Confidence 344555566666666666555 55555666666666666666666 6666555 45555555555566665555668999
Q ss_pred CCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 368 EFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 368 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
.+|..|||.+|.+. .+|..++....+ +.++++|||+.
T Consensus 505 ~nL~tLDL~nNdlq-~IPp~LgnmtnL-~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPPILGNMTNL-RHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchh-hCChhhccccce-eEEEecCCccC
Confidence 99999999999999 999999888777 89999999987
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=4.4e-27 Score=221.07 Aligned_cols=254 Identities=26% Similarity=0.376 Sum_probs=167.6
Q ss_pred CcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCC
Q 012260 109 NSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYG 188 (467)
Q Consensus 109 ~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 188 (467)
...+.+++ .++..|.+|++.+|... ++|+.+ +.+ ..++.|+.++| .++ .+|+.++.+.+|++|+.++|.+ .
T Consensus 57 l~~l~~dl-~nL~~l~vl~~~~n~l~---~lp~ai-g~l-~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~-~ 127 (565)
T KOG0472|consen 57 LEVLREDL-KNLACLTVLNVHDNKLS---QLPAAI-GEL-EALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNEL-K 127 (565)
T ss_pred hhhccHhh-hcccceeEEEeccchhh---hCCHHH-HHH-HHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccce-e
Confidence 44455566 67777777777776665 677777 666 67777777776 554 3666677777777777777776 4
Q ss_pred CcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccC
Q 012260 189 GIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGH 268 (467)
Q Consensus 189 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 268 (467)
.+|+.++.+..|+.++..+|+++ ..|.++.++.+|..+++.+|++....|..+. ++.|++||...|.+. .+|..++.
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~ 204 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG 204 (565)
T ss_pred ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc
Confidence 45566666777777777777776 4566666667777777777777644443333 777777777776665 66667777
Q ss_pred CCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCE
Q 012260 269 LKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSY 348 (467)
Q Consensus 269 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 348 (467)
+.+|+.|++..|++.. +| .|.++..|.+|+++.|++.-...+....++++..|||..|++. +.|..+. -+++|++
T Consensus 205 l~~L~~LyL~~Nki~~--lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~r 279 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRF--LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLER 279 (565)
T ss_pred hhhhHHHHhhhccccc--CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH-Hhhhhhh
Confidence 7777777777777665 44 4566667777777777666333333446666777777777776 6666666 6666777
Q ss_pred EeccCCCCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 349 LSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 349 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
||+|+|.++ ..|..++++ +|++|-+.+|.+.
T Consensus 280 LDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 777777776 455566666 6677777777665
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.5e-21 Score=203.31 Aligned_cols=245 Identities=23% Similarity=0.293 Sum_probs=132.3
Q ss_pred cccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC
Q 012260 110 STLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 110 g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
..+|+.+ . ++|+.|++++|.+. .+|... ++|++|++++| .++. +|.. .++|++|++++|.++ .
T Consensus 214 tsLP~~l-~--~~L~~L~L~~N~Lt---~LP~lp-----~~Lk~LdLs~N-~Lts-LP~l---p~sL~~L~Ls~N~L~-~ 276 (788)
T PRK15387 214 TTLPDCL-P--AHITTLVIPDNNLT---SLPALP-----PELRTLEVSGN-QLTS-LPVL---PPGLLELSIFSNPLT-H 276 (788)
T ss_pred CcCCcch-h--cCCCEEEccCCcCC---CCCCCC-----CCCcEEEecCC-ccCc-ccCc---ccccceeeccCCchh-h
Confidence 3566655 2 36777777777666 455433 67777777777 6664 3432 356677777777664 3
Q ss_pred cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCC
Q 012260 190 IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHL 269 (467)
Q Consensus 190 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 269 (467)
+|.. ..+|+.|++++|+++. +|. .+++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|.. .
T Consensus 277 Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p 341 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---P 341 (788)
T ss_pred hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---c
Confidence 3332 2456666666666663 333 23566667777766663 3321 134555666666665 23421 1
Q ss_pred CCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEE
Q 012260 270 KSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYL 349 (467)
Q Consensus 270 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 349 (467)
.+|++|++++|+++. +|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|.. .++|+.|
T Consensus 342 ~~Lq~LdLS~N~Ls~--LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l----~s~L~~L 407 (788)
T PRK15387 342 SGLQELSVSDNQLAS--LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL----PSELKEL 407 (788)
T ss_pred cccceEecCCCccCC--CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc----ccCCCEE
Confidence 356666666666655 3332 2345555666666553 3322 235566666666665 34432 2455666
Q ss_pred eccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 350 SLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 350 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
++++|++++ +|... .+|+.|++++|+|+ .+|..+.....+ +.+++++||+.
T Consensus 408 dLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L-~~LdLs~N~Ls 458 (788)
T PRK15387 408 MVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLS 458 (788)
T ss_pred EccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCC-CeEECCCCCCC
Confidence 666666653 44321 24555666666665 555554433333 55666666644
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.1e-20 Score=210.83 Aligned_cols=272 Identities=20% Similarity=0.210 Sum_probs=170.5
Q ss_pred cccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC
Q 012260 110 STLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 110 g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
..+|..+ .+.+|+.|++.++.+. .+|..+ ..+ ++|++|+|+++ ...+.+|. ++.+++|++|+|++|.....
T Consensus 602 ~~lP~~f--~~~~L~~L~L~~s~l~---~L~~~~-~~l-~~Lk~L~Ls~~-~~l~~ip~-ls~l~~Le~L~L~~c~~L~~ 672 (1153)
T PLN03210 602 RCMPSNF--RPENLVKLQMQGSKLE---KLWDGV-HSL-TGLRNIDLRGS-KNLKEIPD-LSMATNLETLKLSDCSSLVE 672 (1153)
T ss_pred CCCCCcC--CccCCcEEECcCcccc---cccccc-ccC-CCCCEEECCCC-CCcCcCCc-cccCCcccEEEecCCCCccc
Confidence 4444432 4567777777776665 566666 666 77777777776 44445553 66677777777777666566
Q ss_pred cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccc---
Q 012260 190 IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESL--- 266 (467)
Q Consensus 190 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--- 266 (467)
+|..++++++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|..+
T Consensus 673 lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~ 747 (1153)
T PLN03210 673 LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLE 747 (1153)
T ss_pred cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccccc
Confidence 77777777777777777765444555544 5667777777776554444432 245666666666654 334322
Q ss_pred ---------------------------cCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCC
Q 012260 267 ---------------------------GHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLG 319 (467)
Q Consensus 267 ---------------------------~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 319 (467)
...++|+.|++++|.... .+|..++++++|+.|++++|..-+.+|..+ .++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence 122456666666665555 567777777777777777765444555544 567
Q ss_pred CCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCC-cccccCCCCcccccccCCee
Q 012260 320 GIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENN-NLSGRVPFSAKFSTKVGEKL 398 (467)
Q Consensus 320 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~l 398 (467)
+|+.|++++|.....+|. ..++|+.|+|++|.++ .+|.++..+++|+.|++++| +++ .+|..+.....+ +.+
T Consensus 826 sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L-~~L 898 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL-ETV 898 (1153)
T ss_pred ccCEEECCCCCccccccc----cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC-Cee
Confidence 777777777655545554 2356778888888777 57777888888888888874 454 566554443333 556
Q ss_pred eecCCC
Q 012260 399 KLKGNP 404 (467)
Q Consensus 399 ~l~~Np 404 (467)
++++++
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 665554
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=2.9e-21 Score=205.09 Aligned_cols=249 Identities=21% Similarity=0.308 Sum_probs=198.0
Q ss_pred CCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCC
Q 012260 121 KHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGL 200 (467)
Q Consensus 121 ~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 200 (467)
.+...|+++++.+. .+|..+| ++|+.|++++| .++. +|..+. ++|++|++++|+++ .+|..+. .+|
T Consensus 178 ~~~~~L~L~~~~Lt---sLP~~Ip----~~L~~L~Ls~N-~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L 243 (754)
T PRK15370 178 NNKTELRLKILGLT---TIPACIP----EQITTLILDNN-ELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTI 243 (754)
T ss_pred cCceEEEeCCCCcC---cCCcccc----cCCcEEEecCC-CCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccc
Confidence 46788999988776 6887774 78999999999 8885 676554 58999999999996 4565543 479
Q ss_pred CEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeecccc
Q 012260 201 EEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFN 280 (467)
Q Consensus 201 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 280 (467)
+.|++++|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred cEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC
Confidence 99999999998 5676654 58999999999998 5676654 58999999999998 4565543 57999999999
Q ss_pred CCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCC
Q 012260 281 GFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNV 360 (467)
Q Consensus 281 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ 360 (467)
+++. +|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+
T Consensus 315 ~Lt~--LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 315 SLTA--LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-NL 382 (754)
T ss_pred cccc--CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-CC
Confidence 9987 45433 3689999999999985 56555 379999999999998 7887653 68999999999999 56
Q ss_pred chhhhCCCCCCEEEccCCcccccCCCCccccc---ccCCeeeecCCCCCC
Q 012260 361 PEEFGVLEFVGEINLENNNLSGRVPFSAKFST---KVGEKLKLKGNPDLC 407 (467)
Q Consensus 361 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~---~~~~~l~l~~Np~~C 407 (467)
|..+.. .|+.|++++|+++ .+|..+.... .....+++.+||+..
T Consensus 383 P~~l~~--sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 383 PENLPA--ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CHhHHH--HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 666643 6999999999998 7787653321 223689999999864
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4.4e-20 Score=208.20 Aligned_cols=274 Identities=22% Similarity=0.268 Sum_probs=213.5
Q ss_pred CcccChhhhhcCC-CCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCC
Q 012260 109 NSTLNPLIFTSFK-HLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVY 187 (467)
Q Consensus 109 ~g~l~~~~f~~l~-~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~ 187 (467)
...+|..+ ..++ +|+.|.+.++.+. .+|..+ . . .+|++|++.+| .+. .++..+..+++|+.|+|+++...
T Consensus 577 ~~~lp~~~-~~lp~~Lr~L~~~~~~l~---~lP~~f-~-~-~~L~~L~L~~s-~l~-~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 577 RWHLPEGF-DYLPPKLRLLRWDKYPLR---CMPSNF-R-P-ENLVKLQMQGS-KLE-KLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred eeecCcch-hhcCcccEEEEecCCCCC---CCCCcC-C-c-cCCcEEECcCc-ccc-ccccccccCCCCCEEECCCCCCc
Confidence 34566665 5554 6999999998776 788876 3 3 79999999999 776 47778889999999999998766
Q ss_pred CCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcccccc
Q 012260 188 GGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLG 267 (467)
Q Consensus 188 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 267 (467)
..+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..
T Consensus 648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~-- 723 (1153)
T PLN03210 648 KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI-- 723 (1153)
T ss_pred CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--
Confidence 77774 8889999999999998777899999999999999999987666778765 7999999999999766666643
Q ss_pred CCCCCCeeeccccCCCCCChhHHh------------------------------hcCcCCcEEeccCccCCCCchhHhhc
Q 012260 268 HLKSLEFMDLSFNGFGNFGVPTFL------------------------------AEMDKLREVYLSGNFLGGEIPEIWES 317 (467)
Q Consensus 268 ~l~~L~~L~Ls~n~l~~~~~p~~~------------------------------~~l~~L~~L~L~~n~l~~~~p~~~~~ 317 (467)
.++|++|++++|.+.. +|..+ ..+++|+.|++++|...+.+|..+++
T Consensus 724 -~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 724 -STNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred -cCCcCeeecCCCcccc--ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence 4678999999998765 33321 12346777888888777778888888
Q ss_pred CCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCe
Q 012260 318 LGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEK 397 (467)
Q Consensus 318 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 397 (467)
+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|+|++|.++ .+|..+.....+ +.
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L-~~ 873 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL-SF 873 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCC-CE
Confidence 8888888888876555777665 5788888888887655555543 357888999999988 788776655554 78
Q ss_pred eeecCCCC
Q 012260 398 LKLKGNPD 405 (467)
Q Consensus 398 l~l~~Np~ 405 (467)
+++++++.
T Consensus 874 L~L~~C~~ 881 (1153)
T PLN03210 874 LDMNGCNN 881 (1153)
T ss_pred EECCCCCC
Confidence 88887543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.8e-20 Score=197.89 Aligned_cols=245 Identities=27% Similarity=0.293 Sum_probs=193.5
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
..+++.|++.. |....+|. ..++|++|++++|.+. .+|... ++|++|++++| .++.
T Consensus 221 ~~~L~~L~L~~----------N~Lt~LP~----lp~~Lk~LdLs~N~Lt---sLP~lp-----~sL~~L~Ls~N-~L~~- 276 (788)
T PRK15387 221 PAHITTLVIPD----------NNLTSLPA----LPPELRTLEVSGNQLT---SLPVLP-----PGLLELSIFSN-PLTH- 276 (788)
T ss_pred hcCCCEEEccC----------CcCCCCCC----CCCCCcEEEecCCccC---cccCcc-----cccceeeccCC-chhh-
Confidence 34678888874 33445664 2578999999999887 677543 78999999999 7774
Q ss_pred cchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCC
Q 012260 166 LGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNL 245 (467)
Q Consensus 166 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 245 (467)
+|.. .++|+.|++++|+++. +|. ..++|++|++++|++++ +|.. ..+|+.|++++|++++ +|.. .
T Consensus 277 Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p 341 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---P 341 (788)
T ss_pred hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---c
Confidence 5543 3678999999999964 454 34789999999999996 4432 2468889999999984 5542 2
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEe
Q 012260 246 TNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIG 325 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 325 (467)
.+|++|++++|+++ .+|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|++++ +|.. .++|+.|+
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~--LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~Ld 408 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS--LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELM 408 (788)
T ss_pred cccceEecCCCccC-CCCCC---Ccccceehhhcccccc--Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEE
Confidence 58999999999998 45653 3578889999999987 5643 4679999999999995 4533 36899999
Q ss_pred ccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCc
Q 012260 326 LSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSA 388 (467)
Q Consensus 326 Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 388 (467)
+++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|..+
T Consensus 409 LS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 409 VSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999998 68853 357889999999998 789999999999999999999998877654
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=6.2e-23 Score=193.01 Aligned_cols=269 Identities=23% Similarity=0.236 Sum_probs=167.8
Q ss_pred CCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCC
Q 012260 107 NANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGV 186 (467)
Q Consensus 107 ~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l 186 (467)
|....||+..|..+++||.|||++|.+. .|-+..|.++ ++|.+|-+.+|+.++......|+++..|+.|.+.-|++
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred CCcccCChhhccchhhhceecccccchh---hcChHhhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence 4455666666666666666666666555 2322222555 55544444442155544444566666666666666666
Q ss_pred CCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCC------------CCchhhhhCCCCCCEEEcc
Q 012260 187 YGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFD------------GNVPEEMGNLTNLLKLDLS 254 (467)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~~L~~L~L~ 254 (467)
.-...+.|..+++|..|.+..|.+....-..|..+..++.+++..|.+. ...|-.++......-..+.
T Consensus 153 ~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~ 232 (498)
T KOG4237|consen 153 NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLY 232 (498)
T ss_pred cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHH
Confidence 5555556666666666666666655333335556666666666555521 1112222222222222333
Q ss_pred CCcCCCCccccccCCCCCCee--ec-cccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCC
Q 012260 255 SNVCSGKIPESLGHLKSLEFM--DL-SFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGL 331 (467)
Q Consensus 255 ~n~l~~~~p~~~~~l~~L~~L--~L-s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 331 (467)
++++...-+..|.. .++.+ .+ +.+..........|..+++|+.|+|++|+++++-+.+|.....+++|.|..|++
T Consensus 233 ~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 233 YKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred HHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence 33332222222211 12222 11 222233312234688999999999999999999999999999999999999999
Q ss_pred CCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccc
Q 012260 332 VGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSG 382 (467)
Q Consensus 332 ~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 382 (467)
. .+....+.++..|+.|+|.+|+|+..-|.+|..+..|..|+|-.|.+..
T Consensus 311 ~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 311 E-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred H-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 8 7777777799999999999999999999999999999999999998864
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=7.5e-22 Score=193.20 Aligned_cols=256 Identities=24% Similarity=0.237 Sum_probs=156.7
Q ss_pred CCccEEEcccCCCcccc----cchhhcCCCCCCEEEeecCCCCC------CcccccCCCCCCCEEEccCCcCCCcccccc
Q 012260 149 SSLEELVFIDNPSFVGP----LGGIIGSFTNLRRLVLTGNGVYG------GIPDKVGDLVGLEEITLSRNKLSGGFSFSL 218 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 218 (467)
.+|++|+++++ .++.. ++..+...++|++|+++++.+.+ .++..+..+++|++|++++|.+.+..+..+
T Consensus 23 ~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 44555555555 44322 34444555566666666665541 123445556677777777776665444444
Q ss_pred cCCCC---CCEEeccCCcCCC----CchhhhhCC-CCCCEEEccCCcCCCC----ccccccCCCCCCeeeccccCCCCCC
Q 012260 219 DKLKK---LRILDLSQNQFDG----NVPEEMGNL-TNLLKLDLSSNVCSGK----IPESLGHLKSLEFMDLSFNGFGNFG 286 (467)
Q Consensus 219 ~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~ 286 (467)
..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44444 7777777777662 223345555 7777777777777632 2334556667888888887776422
Q ss_pred ---hhHHhhcCcCCcEEeccCccCCCCc----hhHhhcCCCCcEEeccCCCCCCCCchHHHhc----ccCCCEEeccCCC
Q 012260 287 ---VPTFLAEMDKLREVYLSGNFLGGEI----PEIWESLGGIVGIGLSGTGLVGKIPASMGIH----LKKLSYLSLDNNK 355 (467)
Q Consensus 287 ---~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~----l~~L~~L~Ls~N~ 355 (467)
++..+...++|+.|++++|.+++.. +..+..+++|++|++++|.+++.....+... .+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 2233445568888888888876433 3345567788888888888875344444322 3688999999998
Q ss_pred CCC----CCchhhhCCCCCCEEEccCCccccc----CCCCcccccccCCeeeecCCCC
Q 012260 356 LQG----NVPEEFGVLEFVGEINLENNNLSGR----VPFSAKFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 356 l~~----~~p~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~~~l~l~~Np~ 405 (467)
++. .+...+..+++|+++++++|.++.. +...+......++.+++.+|||
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 872 2345566678899999999988843 2222222212236788888876
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-22 Score=208.17 Aligned_cols=246 Identities=26% Similarity=0.322 Sum_probs=177.9
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
.+|++++++.| .+++ +|+.++.+.+|+.++..+|++ ..+|..+..+.+|+.|++.+|.+. .+|.....++.|++|+
T Consensus 241 ~nl~~~dis~n-~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSN-LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchh-hhhc-chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 46667777776 6665 456666677777777777776 556666666667777777777766 3444556667777777
Q ss_pred ccCCcCCCCchhhh-hCCCC-CCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCcc
Q 012260 229 LSQNQFDGNVPEEM-GNLTN-LLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNF 306 (467)
Q Consensus 229 L~~n~l~~~~p~~l-~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~ 306 (467)
|..|++. ..|+.+ .-... |+.|..+.|++.......=...+.|+.|++.+|.++. ..-+.+.+.++|+.|+|++|+
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD-SCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-cchhhhccccceeeeeecccc
Confidence 7777766 334332 22222 5556666666542211111345678899999999998 565667888999999999999
Q ss_pred CCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccc-cCC
Q 012260 307 LGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSG-RVP 385 (467)
Q Consensus 307 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g-~ip 385 (467)
+.......+.+++.|++|+||+|.++ .+|..+. .++.|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 99777777889999999999999999 9998888 8999999999999998 677 78899999999999999983 344
Q ss_pred CCcccccccCCeeeecCCCCC
Q 012260 386 FSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 386 ~~~~~~~~~~~~l~l~~Np~~ 406 (467)
..... ..++.||++||+|.
T Consensus 471 ~~~p~--p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 471 EALPS--PNLKYLDLSGNTRL 489 (1081)
T ss_pred hhCCC--cccceeeccCCccc
Confidence 43322 33489999999974
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.4e-20 Score=199.85 Aligned_cols=246 Identities=22% Similarity=0.351 Sum_probs=194.4
Q ss_pred eeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccc
Q 012260 88 HITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLG 167 (467)
Q Consensus 88 ~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p 167 (467)
+.+.|+++.. ....+|..+ .++|+.|+|++|.+. .+|..++ ++|++|++++| .++. +|
T Consensus 179 ~~~~L~L~~~----------~LtsLP~~I---p~~L~~L~Ls~N~Lt---sLP~~l~----~nL~~L~Ls~N-~Lts-LP 236 (754)
T PRK15370 179 NKTELRLKIL----------GLTTIPACI---PEQITTLILDNNELK---SLPENLQ----GNIKTLYANSN-QLTS-IP 236 (754)
T ss_pred CceEEEeCCC----------CcCcCCccc---ccCCcEEEecCCCCC---cCChhhc----cCCCEEECCCC-cccc-CC
Confidence 4667777642 223456544 257999999999887 6887663 68999999999 8884 67
Q ss_pred hhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCC
Q 012260 168 GIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTN 247 (467)
Q Consensus 168 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 247 (467)
..+. .+|+.|+|++|++. .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++
T Consensus 237 ~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~s 305 (754)
T PRK15370 237 ATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SG 305 (754)
T ss_pred hhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hh
Confidence 6553 57999999999996 6676654 58999999999999 4676554 589999999999984 565443 57
Q ss_pred CCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEecc
Q 012260 248 LLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLS 327 (467)
Q Consensus 248 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 327 (467)
|+.|++++|.++ .+|..+. ++|++|++++|.++. +|..+ .++|+.|++++|+++ .+|..+ .++|++|+++
T Consensus 306 L~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs 375 (754)
T PRK15370 306 ITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS--LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVS 375 (754)
T ss_pred HHHHHhcCCccc-cCCcccc--ccceeccccCCcccc--CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECC
Confidence 999999999998 4565443 689999999999987 56554 378999999999998 466655 3689999999
Q ss_pred CCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhh----hCCCCCCEEEccCCccc
Q 012260 328 GTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEF----GVLEFVGEINLENNNLS 381 (467)
Q Consensus 328 ~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~ 381 (467)
+|+++ .+|..+. .+|+.|++++|+++ .+|..+ ..++.+..|++.+|.++
T Consensus 376 ~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 376 RNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 99999 7888765 47999999999998 555544 44588999999999987
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=9.4e-21 Score=185.45 Aligned_cols=263 Identities=20% Similarity=0.224 Sum_probs=197.7
Q ss_pred hhhhhcCCCCceEecccccCCCC--cCCCCCCCccccCCccEEEcccCCCcc------cccchhhcCCCCCCEEEeecCC
Q 012260 114 PLIFTSFKHLRKLFFYKCFTEKQ--VPVPDNIPASFGSSLEELVFIDNPSFV------GPLGGIIGSFTNLRRLVLTGNG 185 (467)
Q Consensus 114 ~~~f~~l~~L~~L~L~~~~~~~~--~~ip~~l~~~l~~~L~~L~L~~n~~l~------~~~p~~l~~l~~L~~L~L~~n~ 185 (467)
...|..+.+|+.|+++++.+... ..++..+ ... ++|++|+++++ .+. ..++..+..+++|++|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~-~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQ-PSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhC-CCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 34557888899999999876431 1245445 455 67999999998 666 2355677889999999999999
Q ss_pred CCCCcccccCCCCC---CCEEEccCCcCCC----cccccccCC-CCCCEEeccCCcCCCC----chhhhhCCCCCCEEEc
Q 012260 186 VYGGIPDKVGDLVG---LEEITLSRNKLSG----GFSFSLDKL-KKLRILDLSQNQFDGN----VPEEMGNLTNLLKLDL 253 (467)
Q Consensus 186 l~~~~p~~~~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L 253 (467)
+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 97766666665555 9999999999883 233456667 8999999999999843 3445677889999999
Q ss_pred cCCcCCCC----ccccccCCCCCCeeeccccCCCCCC---hhHHhhcCcCCcEEeccCccCCCCchhHhhc-----CCCC
Q 012260 254 SSNVCSGK----IPESLGHLKSLEFMDLSFNGFGNFG---VPTFLAEMDKLREVYLSGNFLGGEIPEIWES-----LGGI 321 (467)
Q Consensus 254 ~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L 321 (467)
++|.+++. ++..+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++.....+.. .+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 99999843 3345566789999999999987522 3345667889999999999998644443332 3799
Q ss_pred cEEeccCCCCCC----CCchHHHhcccCCCEEeccCCCCCCC----CchhhhCC-CCCCEEEccCCcc
Q 012260 322 VGIGLSGTGLVG----KIPASMGIHLKKLSYLSLDNNKLQGN----VPEEFGVL-EFVGEINLENNNL 380 (467)
Q Consensus 322 ~~L~Ls~N~l~~----~ip~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l 380 (467)
++|++++|.++. .+...+. .+++|+++++++|.++.. ....+... +.|+.+++.+|.+
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999973 2333444 567999999999999955 44455555 6899999998864
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=6.3e-21 Score=196.33 Aligned_cols=246 Identities=26% Similarity=0.299 Sum_probs=203.0
Q ss_pred CCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCC
Q 012260 120 FKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVG 199 (467)
Q Consensus 120 l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 199 (467)
-.+|++++++.+.+. .+|+.+ +.+ .+|+.++..+| .+ ..+|..+....+|+.|++.+|.+ ..+|.....++.
T Consensus 240 p~nl~~~dis~n~l~---~lp~wi-~~~-~nle~l~~n~N-~l-~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~s 311 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS---NLPEWI-GAC-ANLEALNANHN-RL-VALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKS 311 (1081)
T ss_pred cccceeeecchhhhh---cchHHH-Hhc-ccceEecccch-hH-HhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccce
Confidence 457999999998887 799888 999 99999999999 88 45888899999999999999999 567778888999
Q ss_pred CCEEEccCCcCCCcccccccCCCC-CCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeecc
Q 012260 200 LEEITLSRNKLSGGFSFSLDKLKK-LRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLS 278 (467)
Q Consensus 200 L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 278 (467)
|++|+|..|++....+..+.-+.. |+.|..+.|++.......=..++.|+.|++.+|.++...-..+.+.+.|+.|+|+
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 999999999998544434444443 7888888888873321122236789999999999998877788899999999999
Q ss_pred ccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCC
Q 012260 279 FNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQG 358 (467)
Q Consensus 279 ~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 358 (467)
+|++..+ ....+.++..|++|+|++|+++ .+|..+..++.|++|...+|++. .+| .+. .++.|+.+|++.|+++.
T Consensus 392 yNrL~~f-pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 392 YNRLNSF-PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ccccccC-CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh-hcCcceEEecccchhhh
Confidence 9999873 2346788999999999999999 77888999999999999999998 888 555 79999999999999985
Q ss_pred C-CchhhhCCCCCCEEEccCCc
Q 012260 359 N-VPEEFGVLEFVGEINLENNN 379 (467)
Q Consensus 359 ~-~p~~~~~l~~L~~L~Ls~N~ 379 (467)
. +|.... .++|++||+++|.
T Consensus 467 ~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhCC-CcccceeeccCCc
Confidence 4 344333 2799999999996
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=1e-20 Score=159.26 Aligned_cols=166 Identities=28% Similarity=0.490 Sum_probs=132.8
Q ss_pred cCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCC
Q 012260 194 VGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLE 273 (467)
Q Consensus 194 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 273 (467)
+.++.+++.|.|++|+++ .+|..++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 335667778888888888 56667888888888888888888 77888888999999999988887 7888899999999
Q ss_pred eeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccC
Q 012260 274 FMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDN 353 (467)
Q Consensus 274 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~ 353 (467)
.||+.+|++..-.+|..|..+..|+-|+|++|.+. .+|..++.+++|+.|.+..|.+. .+|..++ .++.|+.|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhccc
Confidence 99999998887677877778888888888888887 66777777888888888888777 7777777 777777777777
Q ss_pred CCCCCCCchhhhC
Q 012260 354 NKLQGNVPEEFGV 366 (467)
Q Consensus 354 N~l~~~~p~~~~~ 366 (467)
|+++ .+|..++.
T Consensus 183 nrl~-vlppel~~ 194 (264)
T KOG0617|consen 183 NRLT-VLPPELAN 194 (264)
T ss_pred ceee-ecChhhhh
Confidence 7777 55544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-20 Score=158.67 Aligned_cols=184 Identities=25% Similarity=0.397 Sum_probs=164.2
Q ss_pred cccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcC
Q 012260 217 SLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDK 296 (467)
Q Consensus 217 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 296 (467)
.+.++.+++.|.+++|+++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++.|++.. .|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc--CccccCCCch
Confidence 3456788899999999999 67788999999999999999998 889999999999999999999986 7899999999
Q ss_pred CcEEeccCccCCC-CchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEc
Q 012260 297 LREVYLSGNFLGG-EIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINL 375 (467)
Q Consensus 297 L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 375 (467)
|+.|||.+|++.. ..|..|..++.|+.|.|+.|.|. .+|..++ .+++|+.|.+..|.+. .+|..++.+..|++|.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 9999999999974 67888888999999999999999 9999999 9999999999999998 79999999999999999
Q ss_pred cCCcccccCCCCccccccc--CCeeeecCCCCCCc
Q 012260 376 ENNNLSGRVPFSAKFSTKV--GEKLKLKGNPDLCI 408 (467)
Q Consensus 376 s~N~l~g~ip~~~~~~~~~--~~~l~l~~Np~~C~ 408 (467)
.+|+++ .+|..+...... .+.+.+.+|||.--
T Consensus 181 qgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 181 QGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred ccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 999999 788776543322 24678899999743
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.60 E-value=7.1e-15 Score=155.55 Aligned_cols=155 Identities=22% Similarity=0.333 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCC--CCCCCCCCCCCC--CCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCC
Q 012260 28 PFLSSLEQDSVYQVLDSVNPTI--HWRSLFPDDLCS--SPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPN 103 (467)
Q Consensus 28 ~~~~~~~~~all~~~~~~~~~~--~W~~~~~~~C~~--~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~ 103 (467)
..+.++|.+||+++|+++..+. +|.. ++|+. ..|.||.|+... .....+|+.|+|++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~g---~~C~p~~~~w~Gv~C~~~~---------~~~~~~v~~L~L~~------- 427 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLRFGWNG---DPCVPQQHPWSGADCQFDS---------TKGKWFIDGLGLDN------- 427 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcccCCCCC---CCCCCcccccccceeeccC---------CCCceEEEEEECCC-------
Confidence 3456789999999999987543 7853 67852 259999996411 00113588888874
Q ss_pred CCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeec
Q 012260 104 PPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTG 183 (467)
Q Consensus 104 ~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~ 183 (467)
+.+.|.+|+.+ ..+++|+.|+|++|.+.+ .+|..+ +.+ ++|++|+|++| .++|.+|..++++++|++|+|++
T Consensus 428 --n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g--~iP~~~-~~l-~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 428 --QGLRGFIPNDI-SKLRHLQSINLSGNSIRG--NIPPSL-GSI-TSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred --CCccccCCHHH-hCCCCCCEEECCCCcccC--cCChHH-hCC-CCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcC
Confidence 34566677665 666666666666655544 555555 555 55666666665 55555555555555555555555
Q ss_pred CCCCCCcccccCCC-CCCCEEEccCCc
Q 012260 184 NGVYGGIPDKVGDL-VGLEEITLSRNK 209 (467)
Q Consensus 184 n~l~~~~p~~~~~l-~~L~~L~Ls~n~ 209 (467)
|++++.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555555432 234444444443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=3.3e-13 Score=142.93 Aligned_cols=114 Identities=32% Similarity=0.459 Sum_probs=104.3
Q ss_pred CCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEc
Q 012260 296 KLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINL 375 (467)
Q Consensus 296 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 375 (467)
.++.|+|++|.++|.+|..+..+++|+.|+|++|.+.|.+|..+. .+++|+.|+|++|+++|.+|..++.+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 378899999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred cCCcccccCCCCcccccccCCeeeecCCCCCCcCc
Q 012260 376 ENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 376 s~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
++|+++|.+|..+.........+++.+|+..|+++
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999998875433233688999999999864
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.7e-14 Score=142.23 Aligned_cols=197 Identities=25% Similarity=0.394 Sum_probs=168.7
Q ss_pred cCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCE
Q 012260 171 GSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLK 250 (467)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 250 (467)
..+..-...|++.|++ ..+|..+..+..|+.+.|++|.+. .+|..+.++..|+.+|++.|+++ .+|..+..++ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3567778899999999 678888888899999999999998 77889999999999999999998 7888888776 899
Q ss_pred EEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCC
Q 012260 251 LDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTG 330 (467)
Q Consensus 251 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 330 (467)
|-+++|+++ .+|+.++....|..||.+.|.+.. +|..++.+.+|+.|.+..|++. .+|..+. .-.|..||+|.|+
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence 999999998 789999999999999999999987 7888899999999999999998 4555555 4468899999999
Q ss_pred CCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhC---CCCCCEEEccCCc
Q 012260 331 LVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGV---LEFVGEINLENNN 379 (467)
Q Consensus 331 l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---l~~L~~L~Ls~N~ 379 (467)
++ .||..|. .++.|++|-|.+|.+. ..|..+.- ..-.++|+..-++
T Consensus 223 is-~iPv~fr-~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPVDFR-KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecchhhh-hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 99 9999998 9999999999999998 66766543 2335677777775
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=7e-13 Score=133.84 Aligned_cols=200 Identities=33% Similarity=0.442 Sum_probs=137.3
Q ss_pred EEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCC-CCCEEEccCCcCCCcccccccCCCCCCEEeccC
Q 012260 153 ELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLV-GLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQ 231 (467)
Q Consensus 153 ~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 231 (467)
.+++..| .+...+ ..+..++.++.|++.+|++ ..++.....+. +|++|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~-~~~~~~-~~~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLN-RLRSNI-SELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeecccc-ccccCc-hhhhcccceeEEecCCccc-ccCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4677776 543322 3344457788888888888 44555566664 7888888888887 4455677788888888888
Q ss_pred CcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCc
Q 012260 232 NQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEI 311 (467)
Q Consensus 232 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 311 (467)
|+++ .+|...+..+.|+.|++++|+++ .+|........|+++.+++|.+.. .+..+.++.++..+.+.+|++.. .
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCceeee-c
Confidence 8887 55655557778888888888877 566655555667888888875333 45566777777777777777763 3
Q ss_pred hhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhh
Q 012260 312 PEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEF 364 (467)
Q Consensus 312 p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 364 (467)
+..+..++++++|++++|.++ .++. ++ .+.+++.|++++|.+....|...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~-~~-~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISS-LG-SLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccc-cccc-cc-ccCccCEEeccCccccccchhhh
Confidence 556667777777888877777 5554 44 67777777777777776555443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=4.5e-14 Score=139.30 Aligned_cols=195 Identities=27% Similarity=0.371 Sum_probs=164.3
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
.--...|++.| .+. .+|..+..+-.|+.+.|..|.+ ..+|..+.++..|.+|+|+.|+++ ..|..+..+ -|+.|-
T Consensus 75 tdt~~aDlsrN-R~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRN-RFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred cchhhhhcccc-ccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 44567889998 776 4888888889999999999998 678899999999999999999998 567666665 489999
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (467)
+++|+++ .+|+.++.++.|..||.+.|.+. .+|..++.+.+|+.|.+..|++.. +|+.+..+ .|..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccCcee
Confidence 9999998 78888998999999999999998 788899999999999999999987 67777755 4899999999998
Q ss_pred CCchhHhhcCCCCcEEeccCCCCCCCCchHHHh--cccCCCEEeccCCC
Q 012260 309 GEIPEIWESLGGIVGIGLSGTGLVGKIPASMGI--HLKKLSYLSLDNNK 355 (467)
Q Consensus 309 ~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~--~l~~L~~L~Ls~N~ 355 (467)
.+|-.|.+++.|++|.|.+|.+. .-|..+.. ...-.++|+..-++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 88999999999999999999998 66776652 11224566666664
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.2e-12 Score=132.08 Aligned_cols=175 Identities=34% Similarity=0.516 Sum_probs=82.3
Q ss_pred CCCCCEEEccCCcCCCcccccccCCC-CCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCee
Q 012260 197 LVGLEEITLSRNKLSGGFSFSLDKLK-KLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFM 275 (467)
Q Consensus 197 l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 275 (467)
++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..++.++.|+.|++++|+++ .+|...+..+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 344555555555555 2333333332 5555555555554 33334455555555555555554 333333344555555
Q ss_pred eccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCC
Q 012260 276 DLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNK 355 (467)
Q Consensus 276 ~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 355 (467)
++++|+++. +|.....+..|++|.+++|.+. ..+..+..+.++..+.+.+|++. .++..+. .+++++.|++++|+
T Consensus 192 ~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~-~l~~l~~L~~s~n~ 266 (394)
T COG4886 192 DLSGNKISD--LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG-NLSNLETLDLSNNQ 266 (394)
T ss_pred eccCCcccc--CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc-cccccceecccccc
Confidence 555555544 3333333444555555555322 23333444455555555555544 3233333 44445555555555
Q ss_pred CCCCCchhhhCCCCCCEEEccCCccc
Q 012260 356 LQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 356 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
++. ++. ++...+++.|++++|.++
T Consensus 267 i~~-i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISS-ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccc-ccc-ccccCccCEEeccCcccc
Confidence 552 222 444455555555555554
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=8.9e-12 Score=116.74 Aligned_cols=185 Identities=18% Similarity=0.157 Sum_probs=100.6
Q ss_pred CCCCCCEEEccCCcCCCccccc----ccCCCCCCEEeccCCcCCCCch-------------hhhhCCCCCCEEEccCCcC
Q 012260 196 DLVGLEEITLSRNKLSGGFSFS----LDKLKKLRILDLSQNQFDGNVP-------------EEMGNLTNLLKLDLSSNVC 258 (467)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p-------------~~l~~l~~L~~L~L~~n~l 258 (467)
..++|++|+||.|.+...-+.. +..+..|++|+|.+|.+.-.-- ...+.-++|+++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4445555555555544322222 2345556666666655431111 1122345677777777766
Q ss_pred CCC----ccccccCCCCCCeeeccccCCCCCC---hhHHhhcCcCCcEEeccCccCCCC----chhHhhcCCCCcEEecc
Q 012260 259 SGK----IPESLGHLKSLEFMDLSFNGFGNFG---VPTFLAEMDKLREVYLSGNFLGGE----IPEIWESLGGIVGIGLS 327 (467)
Q Consensus 259 ~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls 327 (467)
... +...|...+.|+.+.+..|.+..-. +-..+..+++|+.|||.+|-++.. +...+..++.|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 422 2234555566777777777664311 233456677777777777766532 23344556677777777
Q ss_pred CCCCCCCCchHH----HhcccCCCEEeccCCCCCCC----CchhhhCCCCCCEEEccCCcc
Q 012260 328 GTGLVGKIPASM----GIHLKKLSYLSLDNNKLQGN----VPEEFGVLEFVGEINLENNNL 380 (467)
Q Consensus 328 ~N~l~~~ip~~~----~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 380 (467)
++.+...-...+ ....++|++|.+.+|.++.. +-..+...+.|..|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777664333222 22456777777777777632 223344566777777777777
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.2e-12 Score=121.39 Aligned_cols=208 Identities=21% Similarity=0.199 Sum_probs=115.4
Q ss_pred hcCCCCceEecccccCCCCcCCC--CCCCccccCCccEEEcccCCCcccccc--hhhcCCCCCCEEEeecCCCCCCcccc
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVP--DNIPASFGSSLEELVFIDNPSFVGPLG--GIIGSFTNLRRLVLTGNGVYGGIPDK 193 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip--~~l~~~l~~~L~~L~L~~n~~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~ 193 (467)
.++.+|+...|.++.... .+ ... ..| ++++.|||+.| -+..-.| .....+++|+.|+++.|++.......
T Consensus 118 sn~kkL~~IsLdn~~V~~---~~~~~~~-k~~-~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED---AGIEEYS-KIL-PNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccccc---cchhhhh-hhC-Ccceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 566777777777765542 22 233 555 77777777777 5554322 23346777777777777764333222
Q ss_pred c-CCCCCCCEEEccCCcCCCc-ccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcc--ccccCC
Q 012260 194 V-GDLVGLEEITLSRNKLSGG-FSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIP--ESLGHL 269 (467)
Q Consensus 194 ~-~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l 269 (467)
. ..+++|+.|.++.|.++.. +...+..+|+|+.|++..|............+..|+.|||++|++. ..+ ...+.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccc
Confidence 1 2456677777777777632 2223345667777777777432233333444566777777776664 222 344566
Q ss_pred CCCCeeeccccCCCCCChhHH-----hhcCcCCcEEeccCccCCCCc-hhHhhcCCCCcEEeccCCCCC
Q 012260 270 KSLEFMDLSFNGFGNFGVPTF-----LAEMDKLREVYLSGNFLGGEI-PEIWESLGGIVGIGLSGTGLV 332 (467)
Q Consensus 270 ~~L~~L~Ls~n~l~~~~~p~~-----~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~ 332 (467)
+.|+.|+++.++++.+..|+. ....++|++|++..|++.... -..+..+++|+.|.+..|.++
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666677777666665544443 234456666666666654211 112233445555555555544
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=1.1e-11 Score=113.88 Aligned_cols=140 Identities=29% Similarity=0.356 Sum_probs=99.0
Q ss_pred CCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHh
Q 012260 236 GNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIW 315 (467)
Q Consensus 236 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 315 (467)
|..-..+..++.|+++||++|.++ .+.++..-.|.++.|+++.|++.. + ..+..+++|+.|||++|.++ .+..+-
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh 348 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLA-ECVGWH 348 (490)
T ss_pred CceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhH-hhhhhH
Confidence 333334444567788888888776 666677777888888888888766 2 33667788888888888777 344444
Q ss_pred hcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCC-chhhhCCCCCCEEEccCCccccc
Q 012260 316 ESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNV-PEEFGVLEFVGEINLENNNLSGR 383 (467)
Q Consensus 316 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g~ 383 (467)
..+.+.++|.|++|.+. .+ ..+. .+.+|..||+++|+|.... -..++++|-|+.+.|.+|.+.+.
T Consensus 349 ~KLGNIKtL~La~N~iE-~L-SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIE-TL-SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhcCEeeeehhhhhHh-hh-hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 56778888888888876 22 2344 6778888888888887432 24678888888888888888843
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=8.5e-12 Score=114.50 Aligned_cols=134 Identities=25% Similarity=0.231 Sum_probs=95.5
Q ss_pred cccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCC
Q 012260 192 DKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKS 271 (467)
Q Consensus 192 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 271 (467)
..+...+.|+++||++|.++ .+..+..-.|.++.|++++|.+.. + +.+..+++|+.|||++|.++ .+...-..+.+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 33445567788888888887 455566667888888888888772 2 33777888888888888876 33333345677
Q ss_pred CCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCC-chhHhhcCCCCcEEeccCCCCC
Q 012260 272 LEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGE-IPEIWESLGGIVGIGLSGTGLV 332 (467)
Q Consensus 272 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 332 (467)
.+.|.++.|.+.. -+.++.+-+|..||+++|++... .-..++++|.|+.+.|.+|.+.
T Consensus 354 IKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7888888887765 34567777888888888887632 1234677888888888888887
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=6.3e-11 Score=104.02 Aligned_cols=57 Identities=37% Similarity=0.497 Sum_probs=8.1
Q ss_pred CCCEEEeecCCCCCCcccccC-CCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCC
Q 012260 175 NLRRLVLTGNGVYGGIPDKVG-DLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFD 235 (467)
Q Consensus 175 ~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 235 (467)
++++|+|.+|.|+.. +.++ .+.+|+.|++++|.++... .+..+++|+.|++++|+++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC
Confidence 444444444444321 1222 2344444444444444221 2333444444444444444
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1.5e-11 Score=115.22 Aligned_cols=184 Identities=24% Similarity=0.296 Sum_probs=108.4
Q ss_pred CCCCCCEEEeecCCCCCCcccc----cCCCCCCCEEEccCCcCCCcc-------------cccccCCCCCCEEeccCCcC
Q 012260 172 SFTNLRRLVLTGNGVYGGIPDK----VGDLVGLEEITLSRNKLSGGF-------------SFSLDKLKKLRILDLSQNQF 234 (467)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~L~~n~l 234 (467)
+.++|++|+||.|-|...-+.. +..+..|++|.|.+|.+...- ....+.-++|+.++...|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3456666666666553332222 234555666666666554110 11123345677777777776
Q ss_pred CCC----chhhhhCCCCCCEEEccCCcCCCC----ccccccCCCCCCeeeccccCCCC---CChhHHhhcCcCCcEEecc
Q 012260 235 DGN----VPEEMGNLTNLLKLDLSSNVCSGK----IPESLGHLKSLEFMDLSFNGFGN---FGVPTFLAEMDKLREVYLS 303 (467)
Q Consensus 235 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~---~~~p~~~~~l~~L~~L~L~ 303 (467)
... +...|...+.|+.+.++.|.+... +...+..++.|+.|||.+|-++. ..+...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 532 234455567777777777766421 22456677777777777777654 1233455667778888888
Q ss_pred CccCCCCchhHh-----hcCCCCcEEeccCCCCCCC----CchHHHhcccCCCEEeccCCCC
Q 012260 304 GNFLGGEIPEIW-----ESLGGIVGIGLSGTGLVGK----IPASMGIHLKKLSYLSLDNNKL 356 (467)
Q Consensus 304 ~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l 356 (467)
+|.+...-...+ ...++|+.|.+.+|.++.. +...+. ..+.|+.|+|++|++
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCcccc
Confidence 887764433332 2357888888888887632 222333 467788888888888
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=1.1e-10 Score=102.38 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=4.9
Q ss_pred cccCCCEEeccCCCCC
Q 012260 342 HLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 342 ~l~~L~~L~Ls~N~l~ 357 (467)
.+++|+.|+|.+|.++
T Consensus 111 ~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp G-TT--EEE-TT-GGG
T ss_pred cCCCcceeeccCCccc
Confidence 3444444444444443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3e-11 Score=116.19 Aligned_cols=209 Identities=25% Similarity=0.232 Sum_probs=147.4
Q ss_pred cCCCCCCEEEeecCCCCCCcc--cccCCCCCCCEEEccCCcCCCccc--ccccCCCCCCEEeccCCcCCCCchhh-hhCC
Q 012260 171 GSFTNLRRLVLTGNGVYGGIP--DKVGDLVGLEEITLSRNKLSGGFS--FSLDKLKKLRILDLSQNQFDGNVPEE-MGNL 245 (467)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l 245 (467)
.++++|+...|.++.+ +..+ .....+++++.|||++|-+....+ .....+++|+.|+++.|++.-..... -..+
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5688999999999887 3333 356688999999999998875433 24467899999999999986332221 2357
Q ss_pred CCCCEEEccCCcCCCC-ccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCc-hhHhhcCCCCcE
Q 012260 246 TNLLKLDLSSNVCSGK-IPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEI-PEIWESLGGIVG 323 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~ 323 (467)
+.|+.|.++.|.++.. +......+|+|+.|++..|..-. ........+..|+.|+|++|++-... -...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 8899999999988732 22344568999999999984222 11122344678999999999886432 134567899999
Q ss_pred EeccCCCCCC-CCchH-----HHhcccCCCEEeccCCCCCCCC-chhhhCCCCCCEEEccCCcccc
Q 012260 324 IGLSGTGLVG-KIPAS-----MGIHLKKLSYLSLDNNKLQGNV-PEEFGVLEFVGEINLENNNLSG 382 (467)
Q Consensus 324 L~Ls~N~l~~-~ip~~-----~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g 382 (467)
|+++.+.+.. .+|+. .. ..++|++|+++.|++...- -..+..+++|+.|....|.++.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~-~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTH-TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhc-ccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 9999998873 12222 12 5789999999999986321 1345566788888888888874
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=6.6e-11 Score=120.02 Aligned_cols=246 Identities=30% Similarity=0.329 Sum_probs=128.4
Q ss_pred cCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCC
Q 012260 119 SFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLV 198 (467)
Q Consensus 119 ~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 198 (467)
.+..++.+++..|.+. .+-..+ ..+ ++|++|++.+| .+... ...+..+++|++|++++|.|+... .+..++
T Consensus 70 ~l~~l~~l~l~~n~i~---~~~~~l-~~~-~~l~~l~l~~n-~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA---KILNHL-SKL-KSLEALDLYDN-KIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhh---hhhccc-ccc-cceeeeecccc-chhhc-ccchhhhhcchheecccccccccc--chhhcc
Confidence 4555566666666554 223333 445 66777777777 55542 222455667777777777765442 244555
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCch-hhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 199 GLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVP-EEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 199 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
.|+.|++++|.++.. ..+..+++|+.+++++|++...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++
T Consensus 141 ~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 141 LLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSL 215 (414)
T ss_pred chhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhc
Confidence 566777777766632 234446666667777766663322 1 35566666666666665422 22233344444456
Q ss_pred cccCCCCCChhHHhhcCc--CCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCC
Q 012260 278 SFNGFGNFGVPTFLAEMD--KLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNK 355 (467)
Q Consensus 278 s~n~l~~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 355 (467)
..|.++... .+..+. .|+.+++++|++. ..+..+..+..+..+++..|++...-... ..+.+..+....|+
T Consensus 216 ~~n~i~~~~---~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~~---~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 216 LDNKISKLE---GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGLE---RLPKLSELWLNDNK 288 (414)
T ss_pred ccccceecc---CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccccc---ccchHHHhccCcch
Confidence 666554411 111112 2566666666665 22234445566666666666665221111 33445555555555
Q ss_pred CCCC---Cchh-hhCCCCCCEEEccCCcccccCC
Q 012260 356 LQGN---VPEE-FGVLEFVGEINLENNNLSGRVP 385 (467)
Q Consensus 356 l~~~---~p~~-~~~l~~L~~L~Ls~N~l~g~ip 385 (467)
+... .... ....+.++.+.+.+|......+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hcchhhhhccccccccccccccccccCccccccc
Confidence 5421 1111 3344556666666666654443
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1e-10 Score=118.63 Aligned_cols=241 Identities=27% Similarity=0.235 Sum_probs=167.0
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
..++.+++..| .+.. +-..+..+++|+.|++.+|+|... ...+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n-~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQN-LIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchh-hhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 67777888887 5543 334577789999999999998544 333778999999999999998654 356777899999
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcc-ccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIP-ESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFL 307 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 307 (467)
+++|.++.. ..+..++.|+.+++++|++...-+ . ...+.+++.+++..|.+.. ...+..+..+..+++..|.+
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHHHHhhcccccc
Confidence 999998832 346668899999999999875433 2 4678889999999998876 23334455566668888887
Q ss_pred CCCchhHhhcCC--CCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccccc--
Q 012260 308 GGEIPEIWESLG--GIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGR-- 383 (467)
Q Consensus 308 ~~~~p~~~~~l~--~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~-- 383 (467)
+..-+ +..+. .|+.+++++|++. .++..+. .+..+..|++.+|++...- .+...+.+..+....|.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~-~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE-NLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-ccccccc-ccccccccchhhccccccc--cccccchHHHhccCcchhcchhh
Confidence 73322 11222 3889999999998 5543444 6788999999999987432 344555677777788876522
Q ss_pred -CCCCcccccccCCeeeecCCCCC
Q 012260 384 -VPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 384 -ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
..............+++.+||..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred hhccccccccccccccccccCccc
Confidence 11111111122256777778755
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.90 E-value=8.6e-11 Score=119.34 Aligned_cols=202 Identities=23% Similarity=0.206 Sum_probs=137.2
Q ss_pred CCCCCEEEccCCcCCCcc-cccccCCCCCCEEeccCCcCCCCchhhhhCC-CCCCEEEccCCcCC----------CCccc
Q 012260 197 LVGLEEITLSRNKLSGGF-SFSLDKLKKLRILDLSQNQFDGNVPEEMGNL-TNLLKLDLSSNVCS----------GKIPE 264 (467)
Q Consensus 197 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~p~ 264 (467)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+.. ..++..+ ..|++|... |.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence 344444544443322222 5577788999999999998863 1222222 234444322 2111 12222
Q ss_pred cccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhccc
Q 012260 265 SLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLK 344 (467)
Q Consensus 265 ~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 344 (467)
++ .+..|...+.++|.+.. +.+.+.-++.|+.|+|++|+++... .+..+++|++|||++|.+. .+|.--...+
T Consensus 160 s~-~Wn~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc- 232 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC- 232 (1096)
T ss_pred ch-hhhhHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-
Confidence 21 13467888999999876 5677788899999999999998543 7889999999999999998 7775332233
Q ss_pred CCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCc
Q 012260 345 KLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 345 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
+|..|.+++|.++.. ..+.++.+|+.||+++|-|.+.-.-...+....+..|+|.|||.-|...
T Consensus 233 ~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 499999999999843 3677899999999999999865443322223334789999999888764
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=7.6e-10 Score=120.26 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=21.1
Q ss_pred ccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 343 LKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 343 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
.++|+.|++..+.....+.+....+..+..+-+..+.+.
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 466666666666555444444444444554445555444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=3.1e-09 Score=115.53 Aligned_cols=239 Identities=21% Similarity=0.223 Sum_probs=133.8
Q ss_pred CcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCC
Q 012260 109 NSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYG 188 (467)
Q Consensus 109 ~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 188 (467)
...++...|..++.|++|||++|.-.+ .+|..+ +.+ -+|++|++++. .+. .+|..+++++.|.+|++..+....
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I-~~L-i~LryL~L~~t-~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSI-GEL-VHLRYLDLSDT-GIS-HLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccC--cCChHH-hhh-hhhhcccccCC-Ccc-ccchHHHHHHhhheeccccccccc
Confidence 345666667778888888888766554 788888 777 78888888887 666 578888888888888888777655
Q ss_pred CcccccCCCCCCCEEEccCCcC--CCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCC----EEEccCCcCCCCc
Q 012260 189 GIPDKVGDLVGLEEITLSRNKL--SGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLL----KLDLSSNVCSGKI 262 (467)
Q Consensus 189 ~~p~~~~~l~~L~~L~Ls~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~ 262 (467)
.+|.....+.+|++|.+..... +...-..+.++.+|+.+....... .+-..+..+..|. .+.+.++... ..
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~ 709 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TL 709 (889)
T ss_pred cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-ee
Confidence 6666666688888887766542 222233444555555555533322 1111122222222 2222222222 34
Q ss_pred cccccCCCCCCeeeccccCCCCCChhHHhhc------CcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCc
Q 012260 263 PESLGHLKSLEFMDLSFNGFGNFGVPTFLAE------MDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIP 336 (467)
Q Consensus 263 p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip 336 (467)
+..+..+.+|+.|.+.++......+ ..... ++++..+...++..- ..+.+..-.++|+.|.+..+.....+.
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCC
Confidence 4566777888888888777653111 11000 112222222222111 122222335777888877776654433
Q ss_pred hHHHhcccCCCEEeccCCCCCCC
Q 012260 337 ASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 337 ~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
.... .+..+..+.+..+.+.+.
T Consensus 788 ~~~k-~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 788 PKLK-ALLELKELILPFNKLEGL 809 (889)
T ss_pred CHHH-HhhhcccEEecccccccc
Confidence 3333 445555555666655544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.5e-09 Score=77.20 Aligned_cols=59 Identities=37% Similarity=0.447 Sum_probs=28.2
Q ss_pred CCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCc
Q 012260 175 NLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQ 233 (467)
Q Consensus 175 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 233 (467)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443334444445555555555555544444444445555555554443
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=6.1e-09 Score=75.17 Aligned_cols=61 Identities=28% Similarity=0.346 Sum_probs=46.1
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcC
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKL 210 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 210 (467)
++|++|++++| .++...+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 36777777777 77765556777788888888888888776677788888888888887764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.65 E-value=3.9e-10 Score=114.66 Aligned_cols=180 Identities=28% Similarity=0.319 Sum_probs=126.9
Q ss_pred ChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcc----------cccchhhcCCCCCCEEEee
Q 012260 113 NPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFV----------GPLGGIIGSFTNLRRLVLT 182 (467)
Q Consensus 113 ~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~----------~~~p~~l~~l~~L~~L~L~ 182 (467)
|-++ ..|..||+|.|.+|.+.. -.++ ..+-..|++|.-.+ .+. |.+-..+. ...|.+.+++
T Consensus 102 pi~i-fpF~sLr~LElrg~~L~~----~~GL-~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fs 172 (1096)
T KOG1859|consen 102 PISI-FPFRSLRVLELRGCDLST----AKGL-QELRHQLEKLICHN--SLDALRHVFASCGGDISNSPV-WNKLATASFS 172 (1096)
T ss_pred Ccee-ccccceeeEEecCcchhh----hhhh-HHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchh-hhhHhhhhcc
Confidence 4455 888999999999987652 1122 22213455554332 121 11111111 3468888899
Q ss_pred cCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhh-hhCCCCCCEEEccCCcCCCC
Q 012260 183 GNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEE-MGNLTNLLKLDLSSNVCSGK 261 (467)
Q Consensus 183 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~ 261 (467)
+|.+ ..+..++.-++.|+.|+|++|+++... .+..+++|++|||++|++. .+|.- ...+ +|+.|.+++|.++..
T Consensus 173 yN~L-~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 173 YNRL-VLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL 247 (1096)
T ss_pred hhhH-HhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh
Confidence 9988 455677888899999999999998554 7888999999999999998 45532 2223 499999999988733
Q ss_pred ccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCC
Q 012260 262 IPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 262 ~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (467)
..+.++++|+.||+++|-+.+..--..+..+..|+.|+|.||.+-
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 456788999999999998887554556677888999999999875
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.54 E-value=9.7e-09 Score=84.14 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=97.2
Q ss_pred CCeeeccccCCCC-CChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEe
Q 012260 272 LEFMDLSFNGFGN-FGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLS 350 (467)
Q Consensus 272 L~~L~Ls~n~l~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 350 (467)
+..++|+.+.+-- ...+..+.....|...+|++|.+....+..-..++.++.|+|++|.++ .+|..+. .++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhhcc
Confidence 4456666666542 012233445556777788888888655555556678888999999998 8888877 889999999
Q ss_pred ccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCc
Q 012260 351 LDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 351 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
++.|.+. ..|..+..+.++.+||.-+|.+. ++|..+. ...+...+++.++||-=+|+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~-~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF-YSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh-ccccHHHHHhcCCcccccCc
Confidence 9999988 66667777888889999999887 7887743 33333567888899887775
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=2.1e-07 Score=84.96 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=81.0
Q ss_pred cCCCCCCCEEEccCCcCCCccccc----ccCCCCCCEEeccCCcCCCC----chhhh---------hCCCCCCEEEccCC
Q 012260 194 VGDLVGLEEITLSRNKLSGGFSFS----LDKLKKLRILDLSQNQFDGN----VPEEM---------GNLTNLLKLDLSSN 256 (467)
Q Consensus 194 ~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~----~p~~l---------~~l~~L~~L~L~~n 256 (467)
+.+|++|+..+||.|.+....|.. ++..+.|++|.+++|.+.-. +...+ .+-|.|+++....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 345566666666666555444432 34455666666666655311 11111 12356666666666
Q ss_pred cCCCCcc----ccccCCCCCCeeeccccCCCCCCh----hHHhhcCcCCcEEeccCccCCCC----chhHhhcCCCCcEE
Q 012260 257 VCSGKIP----ESLGHLKSLEFMDLSFNGFGNFGV----PTFLAEMDKLREVYLSGNFLGGE----IPEIWESLGGIVGI 324 (467)
Q Consensus 257 ~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L 324 (467)
++..-.. ..+..-.+|+.+.+..|.+....+ -..+..+.+|+.|+|++|.++-. ....+..++.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6542111 112222456666666666543111 11223455666666666666522 22233445556666
Q ss_pred eccCCCCCCCCchHHHh-----cccCCCEEeccCCCCCC
Q 012260 325 GLSGTGLVGKIPASMGI-----HLKKLSYLSLDNNKLQG 358 (467)
Q Consensus 325 ~Ls~N~l~~~ip~~~~~-----~l~~L~~L~Ls~N~l~~ 358 (467)
.+..|-++..-...+.. ..++|..|...+|...+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 66666655433333221 23556666666665543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=5e-08 Score=80.04 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=40.4
Q ss_pred CCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEc
Q 012260 296 KLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINL 375 (467)
Q Consensus 296 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 375 (467)
.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+. .+.++-.|+..+|.+. .+|..+...+.....++
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 4444444444444 33333444455555555555554 4444444 3555555555555554 33332222222333344
Q ss_pred cCCcccccCCCCc
Q 012260 376 ENNNLSGRVPFSA 388 (467)
Q Consensus 376 s~N~l~g~ip~~~ 388 (467)
.++.+.+.-|...
T Consensus 154 gnepl~~~~~~kl 166 (177)
T KOG4579|consen 154 GNEPLGDETKKKL 166 (177)
T ss_pred cCCcccccCcccc
Confidence 5555555544443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.2e-08 Score=88.97 Aligned_cols=220 Identities=16% Similarity=0.179 Sum_probs=136.9
Q ss_pred ccEEEcccCCCcccccchhhcCC--CCCCEEEeecCCCCCC-cccccCCC-CCCCEEEccCCcCCCc-ccccccCCCCCC
Q 012260 151 LEELVFIDNPSFVGPLGGIIGSF--TNLRRLVLTGNGVYGG-IPDKVGDL-VGLEEITLSRNKLSGG-FSFSLDKLKKLR 225 (467)
Q Consensus 151 L~~L~L~~n~~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~-~p~~~~~l-~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~ 225 (467)
=+.+|+.+- .+ -|..++.+ .....+.+....+... +.+.+.-. +.||+|||++..++.. .-..+..+.+|+
T Consensus 138 W~~lDl~~r-~i---~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 138 WQTLDLTGR-NI---HPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred eeeeccCCC-cc---ChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 356777665 33 24444444 3455555554433222 12222222 3588899998887632 223456788899
Q ss_pred EEeccCCcCCCCchhhhhCCCCCCEEEccCCc-CCCC-ccccccCCCCCCeeeccccCCCCCChhH-Hhhc-CcCCcEEe
Q 012260 226 ILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNV-CSGK-IPESLGHLKSLEFMDLSFNGFGNFGVPT-FLAE-MDKLREVY 301 (467)
Q Consensus 226 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~p~-~~~~-l~~L~~L~ 301 (467)
.|.+.++++...+...+..-..|+.|+++.+. ++.. ..--+.+++.|..|+++++.+.. +... .+.+ -++|..|+
T Consensus 214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~-~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT-EKVTVAVAHISETLTQLN 292 (419)
T ss_pred hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc-hhhhHHHhhhchhhhhhh
Confidence 99999999888888888888889999988653 3321 11235678888888898888766 3221 2222 34688888
Q ss_pred ccCccCC---CCchhHhhcCCCCcEEeccCCCC-CCCCchHHHhcccCCCEEeccCCCCCCCCchh---hhCCCCCCEEE
Q 012260 302 LSGNFLG---GEIPEIWESLGGIVGIGLSGTGL-VGKIPASMGIHLKKLSYLSLDNNKLQGNVPEE---FGVLEFVGEIN 374 (467)
Q Consensus 302 L~~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l-~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~ 374 (467)
|+|+.-. ..+..-..++++|.+|||+.|.. +...-..++ .++.|++|.++.|.. ++|.. +...|.|.+||
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcC--CChHHeeeeccCcceEEEE
Confidence 8876321 12223345688888888887753 333333444 778888888887754 46654 35567788888
Q ss_pred ccCC
Q 012260 375 LENN 378 (467)
Q Consensus 375 Ls~N 378 (467)
+.++
T Consensus 370 v~g~ 373 (419)
T KOG2120|consen 370 VFGC 373 (419)
T ss_pred eccc
Confidence 7653
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.1e-08 Score=89.47 Aligned_cols=196 Identities=17% Similarity=0.128 Sum_probs=115.4
Q ss_pred CCCCEEEeecCCCCCC-cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCc-CCCC-chhhhhCCCCCCE
Q 012260 174 TNLRRLVLTGNGVYGG-IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQ-FDGN-VPEEMGNLTNLLK 250 (467)
Q Consensus 174 ~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~ 250 (467)
++|++|||++..|+.. +-..+..+.+|+.|.+.++++...+...++.-.+|+.|+++.+. ++.. ..--+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3577777777666422 22334566777777777777777666677777777777777653 2211 1123556777777
Q ss_pred EEccCCcCCCCcccc-cc-CCCCCCeeeccccC--CCCCChhHHhhcCcCCcEEeccCcc-CCCCchhHhhcCCCCcEEe
Q 012260 251 LDLSSNVCSGKIPES-LG-HLKSLEFMDLSFNG--FGNFGVPTFLAEMDKLREVYLSGNF-LGGEIPEIWESLGGIVGIG 325 (467)
Q Consensus 251 L~L~~n~l~~~~p~~-~~-~l~~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 325 (467)
|+++.+.++...-.. +. --++|+.|++++.. +..-.+......+++|.+|||++|. ++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 777777665332111 11 12567777777653 1111344455677888888888764 4444555667778888888
Q ss_pred ccCCCCCCCCchHHH--hcccCCCEEeccCCCCCCCCchhhhCCCCCC
Q 012260 326 LSGTGLVGKIPASMG--IHLKKLSYLSLDNNKLQGNVPEEFGVLEFVG 371 (467)
Q Consensus 326 Ls~N~l~~~ip~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 371 (467)
++++-. .+|..+. ...++|.+||+.++--.+...-....+++|+
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 887753 3444332 1567788888777644333322333445444
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=6.6e-07 Score=82.72 Aligned_cols=215 Identities=18% Similarity=0.168 Sum_probs=120.8
Q ss_pred hcCCCCCCEEEeecCCCCCCc-ccccC-CCCCCCEEEccCCcCCCc--ccccccCCCCCCEEeccCCcCCCCchhhhhCC
Q 012260 170 IGSFTNLRRLVLTGNGVYGGI-PDKVG-DLVGLEEITLSRNKLSGG--FSFSLDKLKKLRILDLSQNQFDGNVPEEMGNL 245 (467)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~~-p~~~~-~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 245 (467)
+.....++.|.+.++.|...- ...|+ ..+.++++||.+|.++.- +...+.++|.|+.|+++.|++...+...-..+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 333445666777776664322 12232 456788899999988742 34456788899999999998874443221355
Q ss_pred CCCCEEEccCCcCCCC-ccccccCCCCCCeeeccccCCCCCChhH-HhhcC-cCCcEEeccCccCCC--CchhHhhcCCC
Q 012260 246 TNLLKLDLSSNVCSGK-IPESLGHLKSLEFMDLSFNGFGNFGVPT-FLAEM-DKLREVYLSGNFLGG--EIPEIWESLGG 320 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l-~~L~~L~L~~n~l~~--~~p~~~~~l~~ 320 (467)
.+|++|-|.+..+.-. ....+..+|.++.|.++.|++..+.+.+ ..... +.+++|++-.|...- ..-..-..+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 6888888887776422 2344566788888888888543321111 11111 133334333332210 00011123466
Q ss_pred CcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCC-chhhhCCCCCCEEEccCCcccccC
Q 012260 321 IVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNV-PEEFGVLEFVGEINLENNNLSGRV 384 (467)
Q Consensus 321 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g~i 384 (467)
+..+.+..|.+...-...-+..++.+..|+|+.|+|.... -+.+.++++|..|.+++|.+...+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 6666677666653322222224556666777777775432 245666777777777777765443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=7e-07 Score=82.58 Aligned_cols=110 Identities=25% Similarity=0.252 Sum_probs=69.6
Q ss_pred CCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCccc--ccchhhcCCCCCCEEEeecCCCCCCcccccCCCCC
Q 012260 122 HLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVG--PLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVG 199 (467)
Q Consensus 122 ~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 199 (467)
.++-|.+.++.+...+..- .+ +..++.+++|||.+| .++. .+-..+.+++.|++|+|+.|++...|-..-..+.+
T Consensus 46 a~ellvln~~~id~~gd~~-~~-~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVM-LF-GSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHH-HH-HHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 3445555555443211111 12 333378888999888 7764 34455678889999999998886655333245678
Q ss_pred CCEEEccCCcCCCc-ccccccCCCCCCEEeccCCcC
Q 012260 200 LEEITLSRNKLSGG-FSFSLDKLKKLRILDLSQNQF 234 (467)
Q Consensus 200 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l 234 (467)
|+.|.|.+..+.-. ....+..+|.++.|+++.|.+
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 88888888776533 233456778888888887743
No 52
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.17 E-value=2.3e-06 Score=56.70 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCC-----CCCCCCCCCCCCCCCCceeEcC
Q 012260 32 SLEQDSVYQVLDSVNPT-----IHWRSLFPDDLCSSPPHGVVCD 70 (467)
Q Consensus 32 ~~~~~all~~~~~~~~~-----~~W~~~~~~~C~~~~w~gv~C~ 70 (467)
++|++||++||+++..+ .+|+.....+|| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence 68999999999999852 479865313444 39999996
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=3.1e-06 Score=77.45 Aligned_cols=236 Identities=18% Similarity=0.137 Sum_probs=150.0
Q ss_pred cCCCCCCEEEeecCCCCCCcc----cccCCCCCCCEEEccCCcCC---Ccc-------cccccCCCCCCEEeccCCcCCC
Q 012260 171 GSFTNLRRLVLTGNGVYGGIP----DKVGDLVGLEEITLSRNKLS---GGF-------SFSLDKLKKLRILDLSQNQFDG 236 (467)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~---~~~-------p~~l~~l~~L~~L~L~~n~l~~ 236 (467)
..+..++.++|++|.|...-. ..+.+-.+|+..+++.-... ..+ -.++.++|+|+..+|++|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 335666777777776643322 23444566666666653211 112 2356789999999999999987
Q ss_pred Cchhhh----hCCCCCCEEEccCCcCCCCcccc-------------ccCCCCCCeeeccccCCCCCChhH---HhhcCcC
Q 012260 237 NVPEEM----GNLTNLLKLDLSSNVCSGKIPES-------------LGHLKSLEFMDLSFNGFGNFGVPT---FLAEMDK 296 (467)
Q Consensus 237 ~~p~~l----~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~Ls~n~l~~~~~p~---~~~~l~~ 296 (467)
..|+.+ .+-..|.+|.+++|.+...--.. ..+-|.|+++....|++...+... .+..-..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 766544 45678999999999875221111 234578999999999987633222 2233358
Q ss_pred CcEEeccCccCCCCc-----hhHhhcCCCCcEEeccCCCCCCCCchHHHh---cccCCCEEeccCCCCCCCCchhh----
Q 012260 297 LREVYLSGNFLGGEI-----PEIWESLGGIVGIGLSGTGLVGKIPASMGI---HLKKLSYLSLDNNKLQGNVPEEF---- 364 (467)
Q Consensus 297 L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~---~l~~L~~L~Ls~N~l~~~~p~~~---- 364 (467)
|+.+.+..|.|...- -..+..+.+|+.|||..|-++-.-...+.. ..+.|+.|.+..|-++..-..++
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 999999999887431 122356789999999999998432222221 45668999999998875433222
Q ss_pred --hCCCCCCEEEccCCcccccCCCCccc------ccccCCeeeecCCCCC
Q 012260 365 --GVLEFVGEINLENNNLSGRVPFSAKF------STKVGEKLKLKGNPDL 406 (467)
Q Consensus 365 --~~l~~L~~L~Ls~N~l~g~ip~~~~~------~~~~~~~l~l~~Np~~ 406 (467)
...++|..|...+|...|.+-..+.. ....+..+.+.||.+.
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 23578899999999887655433211 1111234555677654
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=9.8e-06 Score=80.03 Aligned_cols=137 Identities=18% Similarity=0.336 Sum_probs=85.1
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
..+.++++|++++|.+. .+| .+| .+|++|+++++..+ ..+|..+ .++|++|++++|.....+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~---sLP-~LP----~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~----- 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIE---SLP-VLP----NELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGLPE----- 112 (426)
T ss_pred HHhcCCCEEEeCCCCCc---ccC-CCC----CCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccccc-----
Confidence 55788999999999776 677 454 78999999987444 4456544 35899999998833244553
Q ss_pred CCCCEEEccCCcCCCcccccccCC-CCCCEEeccCCc-CC-CCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCe
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKL-KKLRILDLSQNQ-FD-GNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEF 274 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 274 (467)
+|+.|+++.+.... +..+ ++|+.|.+.+++ .. ..+|..+ -++|++|++++|... ..|..+. .+|+.
T Consensus 113 -sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~ 181 (426)
T PRK15386 113 -SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQS 181 (426)
T ss_pred -ccceEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcE
Confidence 46777777665431 2222 256677765432 11 0111111 157888888887755 3444443 57888
Q ss_pred eeccccC
Q 012260 275 MDLSFNG 281 (467)
Q Consensus 275 L~Ls~n~ 281 (467)
|+++.+.
T Consensus 182 L~ls~n~ 188 (426)
T PRK15386 182 ITLHIEQ 188 (426)
T ss_pred EEecccc
Confidence 8887663
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=3.2e-06 Score=90.04 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=84.9
Q ss_pred CCccEEEcccCCCcccccchhhc-CCCCCCEEEeecCCCCCC-cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIG-SFTNLRRLVLTGNGVYGG-IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRI 226 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 226 (467)
.+|++|++++...+...-|..++ -+|.|++|.+++-.+... .-....++++|..||+|+.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46778888777555555555555 468888888877655332 233445677788888888777743 56677777877
Q ss_pred EeccCCcCCC-CchhhhhCCCCCCEEEccCCcCCCCc--c----ccccCCCCCCeeeccccCCCC
Q 012260 227 LDLSQNQFDG-NVPEEMGNLTNLLKLDLSSNVCSGKI--P----ESLGHLKSLEFMDLSFNGFGN 284 (467)
Q Consensus 227 L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~Ls~n~l~~ 284 (467)
|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777766542 22234667788888888765543211 1 112346777777777776655
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=6.9e-06 Score=54.57 Aligned_cols=36 Identities=36% Similarity=0.574 Sum_probs=21.5
Q ss_pred CCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 345 KLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 345 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 34545666666666666666665
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=3.3e-05 Score=76.40 Aligned_cols=136 Identities=17% Similarity=0.197 Sum_probs=75.6
Q ss_pred hcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCC-cCCCCchhhhhCCCCC
Q 012260 170 IGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQN-QFDGNVPEEMGNLTNL 248 (467)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L 248 (467)
+..+.++++|++++|.++ .+|. --.+|++|.++++.--..+|..+. ++|+.|++++| .+. .+|. .|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 445788999999998774 3452 123688888887543335565442 57888888887 443 4443 46
Q ss_pred CEEEccCCcCC--CCccccccCCCCCCeeeccccC-CCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEe
Q 012260 249 LKLDLSSNVCS--GKIPESLGHLKSLEFMDLSFNG-FGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIG 325 (467)
Q Consensus 249 ~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 325 (467)
+.|++..+... +.+| ++|+.|.+..++ .....+|.. -+++|++|++++|... ..|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 66777655432 1222 245566654322 111012211 1256777777776654 2232222 4677777
Q ss_pred ccCC
Q 012260 326 LSGT 329 (467)
Q Consensus 326 Ls~N 329 (467)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7665
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=9.9e-06 Score=86.40 Aligned_cols=107 Identities=25% Similarity=0.346 Sum_probs=56.6
Q ss_pred CCCCEEEeecCCCC-CCcccccC-CCCCCCEEEccCCcCCCcc-cccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCE
Q 012260 174 TNLRRLVLTGNGVY-GGIPDKVG-DLVGLEEITLSRNKLSGGF-SFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLK 250 (467)
Q Consensus 174 ~~L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 250 (467)
.+|++|++++.... ...|..++ -+|.|+.|.+.+-.+.... -....++++|..||+++.+++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777765432 22233333 3566777766665554221 22334566666666666666532 45666666666
Q ss_pred EEccCCcCCC-CccccccCCCCCCeeeccccCC
Q 012260 251 LDLSSNVCSG-KIPESLGHLKSLEFMDLSFNGF 282 (467)
Q Consensus 251 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l 282 (467)
|.+.+=.+.. ..-..+.++++|+.||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 6665543331 1112344566666666665543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.9e-05 Score=52.44 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=17.9
Q ss_pred CCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCC
Q 012260 320 GIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 320 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
+|++|++++|+++ .+|..+. .+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~-~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELS-NLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGT-TCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHh-CCCCCCEEEecCCCCC
Confidence 4455555555555 4444444 5555555555555555
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=4.3e-05 Score=67.17 Aligned_cols=58 Identities=29% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcC
Q 012260 199 GLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVC 258 (467)
Q Consensus 199 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 258 (467)
+...+||++|.+... ..|..+++|..|.+.+|+|+.+-|.--.-+++|+.|.+.+|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 344555555554421 1333444555555555555533333222234444444444444
No 61
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.52 E-value=2.2e-05 Score=91.86 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=50.2
Q ss_pred EccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCCCC-----CCCcccCCCCCCCcccccccc
Q 012260 374 NLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASGS-----IGQLKLCKKPDNPKAAMFSDA 442 (467)
Q Consensus 374 ~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~~-----~~~~~~C~~p~~~~g~~~~d~ 442 (467)
||++|+|+ .+|...+.....++.|+|++|||.|+|++.||.++.... ......|+.|+..+|..+.++
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l 73 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGI 73 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccC
Confidence 57888888 777766554444589999999999999999877653222 123468999999999665544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00012 Score=64.52 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=51.6
Q ss_pred CCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCC--CCchHHHhcccCCCE
Q 012260 271 SLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVG--KIPASMGIHLKKLSY 348 (467)
Q Consensus 271 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~ 348 (467)
+...+||++|.+.. -..|..++.|.+|.|.+|+|+...|..-.-+++|+.|.|.+|.+.. .+. .+. .+++|++
T Consensus 43 ~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa-~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLA-SCPKLEY 117 (233)
T ss_pred ccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhc-cCCccce
Confidence 34455555555443 1233445555566666666555444444445556666666655541 111 111 4566666
Q ss_pred EeccCCCCCCCCc---hhhhCCCCCCEEEccC
Q 012260 349 LSLDNNKLQGNVP---EEFGVLEFVGEINLEN 377 (467)
Q Consensus 349 L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~ 377 (467)
|.+-+|..+..-- -.+..+|+|+.||...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666666553211 1344566777776654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.48 E-value=0.0003 Score=58.63 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=27.8
Q ss_pred hcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCC
Q 012260 170 IGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLL 249 (467)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 249 (467)
|.++++|+.+.+.++ +.......|.++++++.+.+.. .+.......|..+++|+.+++..+ +.......|.+. .|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 444444444444442 3333333444444455555433 222222333444455555554433 222222333343 444
Q ss_pred EEEcc
Q 012260 250 KLDLS 254 (467)
Q Consensus 250 ~L~L~ 254 (467)
.+.+.
T Consensus 107 ~i~~~ 111 (129)
T PF13306_consen 107 EINIP 111 (129)
T ss_dssp EEE-T
T ss_pred EEEEC
Confidence 44444
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00047 Score=57.50 Aligned_cols=127 Identities=14% Similarity=0.186 Sum_probs=64.1
Q ss_pred cChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcc
Q 012260 112 LNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIP 191 (467)
Q Consensus 112 l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 191 (467)
|+...|.++++|+.+.+.+ .+. .|+...|.++ ++|+.+.+..+ +...-...|.++++|+.+.+.+ .+.....
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~---~I~~~~F~~~-~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~ 74 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIK---KIGENAFSNC-TSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGD 74 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T-----EE-TTTTTT--TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-T
T ss_pred ECHHHHhCCCCCCEEEECC-Cee---EeChhhcccc-ccccccccccc--ccccceeeeecccccccccccc-ccccccc
Confidence 4455677788888888764 233 5666665666 78888888664 3333335677777888888865 4434445
Q ss_pred cccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCC
Q 012260 192 DKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLL 249 (467)
Q Consensus 192 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 249 (467)
..|..+++|+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|+
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 66777888888888765 554455567776 888888775 44434445566666553
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00016 Score=66.20 Aligned_cols=38 Identities=37% Similarity=0.625 Sum_probs=15.3
Q ss_pred CCCCCEEEccCC--cCCCcccccccCCCCCCEEeccCCcC
Q 012260 197 LVGLEEITLSRN--KLSGGFSFSLDKLKKLRILDLSQNQF 234 (467)
Q Consensus 197 l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l 234 (467)
+++|++|.++.| ++++.++.....+++|+++++++|++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344444444444 33333332223334444444444444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00027 Score=64.82 Aligned_cols=62 Identities=31% Similarity=0.363 Sum_probs=28.1
Q ss_pred CCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCC--cCCCCchhhhhCCCCCCEEEccCCcCC
Q 012260 196 DLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQN--QFDGNVPEEMGNLTNLLKLDLSSNVCS 259 (467)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~ 259 (467)
.+..|+.|++.+..++.. ..+..+++|+.|.++.| +..+.++.....+++|+++++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444444444444311 12334455555555555 333333333334455555555555543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=8.8e-05 Score=68.35 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=63.4
Q ss_pred CCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEE
Q 012260 221 LKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREV 300 (467)
Q Consensus 221 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L 300 (467)
+.+.+.|++.++.++.+ .....|+.|++|.|+-|+++.. ..+..|++|++|+|..|.|..+.--.-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34555666666666532 2245677777777777777643 3456677777777777777664444556677777777
Q ss_pred eccCccCCCCchh-----HhhcCCCCcEEe
Q 012260 301 YLSGNFLGGEIPE-----IWESLGGIVGIG 325 (467)
Q Consensus 301 ~L~~n~l~~~~p~-----~~~~l~~L~~L~ 325 (467)
+|..|.-.|.-+. .+.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777766554332 344567777665
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.88 E-value=6.1e-05 Score=73.10 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=45.7
Q ss_pred CCCCCCeeeccccC-CCCCChhHHhhcCcCCcEEeccCccCCC--CchhHhhcCCCCcEEeccCCCCCCCC----chHHH
Q 012260 268 HLKSLEFMDLSFNG-FGNFGVPTFLAEMDKLREVYLSGNFLGG--EIPEIWESLGGIVGIGLSGTGLVGKI----PASMG 340 (467)
Q Consensus 268 ~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~i----p~~~~ 340 (467)
+..+|+.+.++.++ ++...+...-.+++.|+.+++.++.... .+...-.+++.|+.+.++++...... -....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34555555555543 2221111222344555555555553321 11111223455555555555432111 00000
Q ss_pred hcccCCCEEeccCCCCC-CCCchhhhCCCCCCEEEccCC
Q 012260 341 IHLKKLSYLSLDNNKLQ-GNVPEEFGVLEFVGEINLENN 378 (467)
Q Consensus 341 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N 378 (467)
.....|+.+.|+++..+ ...-+.+..+++|+.+++-++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 13445555555555433 122233444555555555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00029 Score=65.05 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=46.1
Q ss_pred CeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEecc
Q 012260 273 EFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLD 352 (467)
Q Consensus 273 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls 352 (467)
+.|++.++.++. ......++.|+.|.|+-|.++..-| +..+++|++|.|..|.|...-.-....++++|+.|.|.
T Consensus 22 kKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 22 KKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhcccCCCccH---HHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344444444443 1223344555555555555543322 34455555555555555421111222356666666666
Q ss_pred CCCCCCCCch-----hhhCCCCCCEEE
Q 012260 353 NNKLQGNVPE-----EFGVLEFVGEIN 374 (467)
Q Consensus 353 ~N~l~~~~p~-----~~~~l~~L~~L~ 374 (467)
.|.-.|.-+. .+.-+|+|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 6665554432 234456666654
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.02 E-value=0.00068 Score=66.02 Aligned_cols=255 Identities=15% Similarity=0.061 Sum_probs=136.9
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccch-hhcCCCCCCEEEeecCC-CCCC-ccccc
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGG-IIGSFTNLRRLVLTGNG-VYGG-IPDKV 194 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~-~l~~l~~L~~L~L~~n~-l~~~-~p~~~ 194 (467)
.+++++++|.+.+|..... .--.++-..+ +.|++|++..+..++...-. .-.++++|++|+++.+. +++. +-...
T Consensus 161 ~~CpnIehL~l~gc~~iTd-~s~~sla~~C-~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITD-SSLLSLARYC-RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhCCchhhhhhhcceeccH-HHHHHHHHhc-chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 6677888887777642211 1111120223 66777777765445443333 22356777777776653 2220 01112
Q ss_pred CCCCC--------------------------CCEEEccCCc-CCCcccc-cccCCCCCCEEeccCCcCCCCc-hhhh-hC
Q 012260 195 GDLVG--------------------------LEEITLSRNK-LSGGFSF-SLDKLKKLRILDLSQNQFDGNV-PEEM-GN 244 (467)
Q Consensus 195 ~~l~~--------------------------L~~L~Ls~n~-l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~-p~~l-~~ 244 (467)
.+++. +.++++.++. ++...-. .-..+..|+.|+.+++...+.. -..+ .+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 22233 3334433332 2211100 1123567788887776542221 1222 35
Q ss_pred CCCCCEEEccCCcCCCCcc-ccc-cCCCCCCeeeccccCCCCC-ChhHHhhcCcCCcEEeccCccCCCCc-----hhHhh
Q 012260 245 LTNLLKLDLSSNVCSGKIP-ESL-GHLKSLEFMDLSFNGFGNF-GVPTFLAEMDKLREVYLSGNFLGGEI-----PEIWE 316 (467)
Q Consensus 245 l~~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~ 316 (467)
.++|+++.++.++.-+..- ..+ .+++.|+.+++..+..... .+-..-.+++.|+.+.++++...... ...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 6899999998876321111 111 3578899999988765331 23333357889999999988653221 11123
Q ss_pred cCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCC--CchhhhCCCCCCEEE
Q 012260 317 SLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGN--VPEEFGVLEFVGEIN 374 (467)
Q Consensus 317 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~ 374 (467)
....|+.+.|+++..+..-.......+++|+.+++-+++-... +...-..+|+++..-
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 4678999999999876333322233788999999988864322 223334566665543
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.79 E-value=0.00022 Score=73.01 Aligned_cols=183 Identities=26% Similarity=0.241 Sum_probs=97.3
Q ss_pred CCCEEEeecCCCCCCcc----cccCCCCCCCEEEccCCcCCCcccc----cccCC-CCCCEEeccCCcCCCC----chhh
Q 012260 175 NLRRLVLTGNGVYGGIP----DKVGDLVGLEEITLSRNKLSGGFSF----SLDKL-KKLRILDLSQNQFDGN----VPEE 241 (467)
Q Consensus 175 ~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~p~----~l~~l-~~L~~L~L~~n~l~~~----~p~~ 241 (467)
.+..|.|.+|.+..... ..+.....|+.|++++|.+...--. .+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37888888888865433 3456677888888888888732111 22222 4566777777776643 4455
Q ss_pred hhCCCCCCEEEccCCcCCC----Cccccc----cCCCCCCeeeccccCCCCCCh---hHHhhcCcC-CcEEeccCccCCC
Q 012260 242 MGNLTNLLKLDLSSNVCSG----KIPESL----GHLKSLEFMDLSFNGFGNFGV---PTFLAEMDK-LREVYLSGNFLGG 309 (467)
Q Consensus 242 l~~l~~L~~L~L~~n~l~~----~~p~~~----~~l~~L~~L~Ls~n~l~~~~~---p~~~~~l~~-L~~L~L~~n~l~~ 309 (467)
+.....++.++++.|.+.. .++..+ ....++++|.+.+|.++.... ...+...+. +..|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5666777777777776631 112222 234556666666666543111 112222333 4456666665553
Q ss_pred Cc----hhHhhcC-CCCcEEeccCCCCCCCCchHHHh---cccCCCEEeccCCCCC
Q 012260 310 EI----PEIWESL-GGIVGIGLSGTGLVGKIPASMGI---HLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 310 ~~----p~~~~~l-~~L~~L~Ls~N~l~~~ip~~~~~---~l~~L~~L~Ls~N~l~ 357 (467)
.. ...+... ..+++++++.|.++..-...+.. .++.++.+.+++|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 31 1122223 34455666666655432222211 3445555556555554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.16 E-value=0.00061 Score=69.81 Aligned_cols=205 Identities=22% Similarity=0.195 Sum_probs=134.2
Q ss_pred ccEEEcccCCCcccccc----hhhcCCCCCCEEEeecCCCCCCcc----cccCCC-CCCCEEEccCCcCCCc----cccc
Q 012260 151 LEELVFIDNPSFVGPLG----GIIGSFTNLRRLVLTGNGVYGGIP----DKVGDL-VGLEEITLSRNKLSGG----FSFS 217 (467)
Q Consensus 151 L~~L~L~~n~~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l-~~L~~L~Ls~n~l~~~----~p~~ 217 (467)
+..|.|.+| .+..... ..+.....|..|++++|.+...-- ..+... ..+++|++..|.++.. +...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 788899998 6655433 345667889999999999863321 122222 4577788888887743 4455
Q ss_pred ccCCCCCCEEeccCCcCCC----Cchhhhh----CCCCCCEEEccCCcCCCCc----cccccCCCC-CCeeeccccCCCC
Q 012260 218 LDKLKKLRILDLSQNQFDG----NVPEEMG----NLTNLLKLDLSSNVCSGKI----PESLGHLKS-LEFMDLSFNGFGN 284 (467)
Q Consensus 218 l~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~----p~~~~~l~~-L~~L~Ls~n~l~~ 284 (467)
+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +..+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667889999999998731 1333344 4678999999998876321 233445555 7779999998875
Q ss_pred C---ChhHHhhcC-cCCcEEeccCccCCCCc----hhHhhcCCCCcEEeccCCCCCCCCchHHHh---cccCCCEEeccC
Q 012260 285 F---GVPTFLAEM-DKLREVYLSGNFLGGEI----PEIWESLGGIVGIGLSGTGLVGKIPASMGI---HLKKLSYLSLDN 353 (467)
Q Consensus 285 ~---~~p~~~~~l-~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~---~l~~L~~L~Ls~ 353 (467)
. .....+..+ ..++.++++.|.++..- ...+..++.++++.+++|.+...-...... ....+..+-+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 2 122334445 57799999999998643 444556789999999999987543322211 233455555665
Q ss_pred CCC
Q 012260 354 NKL 356 (467)
Q Consensus 354 N~l 356 (467)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 544
No 73
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=95.15 E-value=0.0029 Score=43.36 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=24.6
Q ss_pred CCCCCcCcccccCCCCCC----CCCCcccCCCCCCCcc
Q 012260 403 NPDLCIDEKFSIGKNASG----SIGQLKLCKKPDNPKA 436 (467)
Q Consensus 403 Np~~C~c~~~~~~~~~~~----~~~~~~~C~~p~~~~g 436 (467)
|||.|+|++.||..+... .......|..|+..++
T Consensus 1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~~ 38 (51)
T smart00082 1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLRG 38 (51)
T ss_pred CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHHh
Confidence 899999999887764322 1223589999988774
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.91 E-value=0.013 Score=32.41 Aligned_cols=9 Identities=44% Similarity=0.375 Sum_probs=3.8
Q ss_pred ccEEEcccC
Q 012260 151 LEELVFIDN 159 (467)
Q Consensus 151 L~~L~L~~n 159 (467)
|++||+++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.76 E-value=0.013 Score=32.38 Aligned_cols=19 Identities=37% Similarity=0.579 Sum_probs=9.3
Q ss_pred CCEEEeecCCCCCCcccccC
Q 012260 176 LRRLVLTGNGVYGGIPDKVG 195 (467)
Q Consensus 176 L~~L~L~~n~l~~~~p~~~~ 195 (467)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555554 4444343
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.59 E-value=0.0081 Score=61.96 Aligned_cols=31 Identities=16% Similarity=-0.091 Sum_probs=18.6
Q ss_pred HhcccCCCEEeccCCCCCCCC-chhhhCCCCC
Q 012260 340 GIHLKKLSYLSLDNNKLQGNV-PEEFGVLEFV 370 (467)
Q Consensus 340 ~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L 370 (467)
...+++++.+.+.++...... ...+.+++.|
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 336777888888877743222 2455566655
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.03 E-value=0.056 Score=27.71 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=4.8
Q ss_pred CCCEEEccCCccc
Q 012260 369 FVGEINLENNNLS 381 (467)
Q Consensus 369 ~L~~L~Ls~N~l~ 381 (467)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555555444
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.36 E-value=0.064 Score=55.27 Aligned_cols=133 Identities=24% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCCCCCEEeccCCcCCCC--chhhhhCCCCCCEEEccCC-cCCCCcc----ccccCCCCCCeeeccccC-CCCCChhHHh
Q 012260 220 KLKKLRILDLSQNQFDGN--VPEEMGNLTNLLKLDLSSN-VCSGKIP----ESLGHLKSLEFMDLSFNG-FGNFGVPTFL 291 (467)
Q Consensus 220 ~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~-l~~~~~p~~~ 291 (467)
..+.|+.+.+..+.-... +-......+.|+.|+++++ ......+ .....+.+|+.|+++++. ++...+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367788887776643322 3345566788888888763 1111111 233445777888887776 5553333333
Q ss_pred hcCcCCcEEeccCcc-CCCC-chhHhhcCCCCcEEeccCCCCCCC--CchHHHhcccCCCEEeccC
Q 012260 292 AEMDKLREVYLSGNF-LGGE-IPEIWESLGGIVGIGLSGTGLVGK--IPASMGIHLKKLSYLSLDN 353 (467)
Q Consensus 292 ~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~--ip~~~~~~l~~L~~L~Ls~ 353 (467)
..+++|+.|.+.++. +++. +-.....++.|++|+++++...+. +... ...+++|+.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhh
Confidence 447778888877665 4432 222334567788888887665421 2222 22566666654433
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.47 E-value=0.012 Score=53.26 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=39.1
Q ss_pred cCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCC
Q 012260 267 GHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKL 346 (467)
Q Consensus 267 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 346 (467)
......+.||++.|++.. ....+..++.|..|+++.|++. ..|..+.....+..+++..|..+ ..|.+.. ..+++
T Consensus 39 ~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~~~ 113 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEPHP 113 (326)
T ss_pred hccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccCCc
Confidence 334445555555554433 2223333444455555555544 44444444444444444444444 4444444 44444
Q ss_pred CEEeccCCCC
Q 012260 347 SYLSLDNNKL 356 (467)
Q Consensus 347 ~~L~Ls~N~l 356 (467)
+++++-.|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 4444444443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.56 E-value=0.0075 Score=54.54 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=34.3
Q ss_pred hcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCC
Q 012260 170 IGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLL 249 (467)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 249 (467)
+..+.+.+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..+..+..++++++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344444555555554441 12223333334444444444443 23334444444444444444333 3343444444444
Q ss_pred EEEccCC
Q 012260 250 KLDLSSN 256 (467)
Q Consensus 250 ~L~L~~n 256 (467)
++++.+|
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 4444333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.51 E-value=0.36 Score=27.60 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=6.2
Q ss_pred CCCEEeccCCCCC
Q 012260 345 KLSYLSLDNNKLQ 357 (467)
Q Consensus 345 ~L~~L~Ls~N~l~ 357 (467)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.51 E-value=0.36 Score=27.60 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=6.2
Q ss_pred CCCEEeccCCCCC
Q 012260 345 KLSYLSLDNNKLQ 357 (467)
Q Consensus 345 ~L~~L~Ls~N~l~ 357 (467)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.39 E-value=0.45 Score=27.15 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=10.0
Q ss_pred CCCCEEEccCCcccccCCCC
Q 012260 368 EFVGEINLENNNLSGRVPFS 387 (467)
Q Consensus 368 ~~L~~L~Ls~N~l~g~ip~~ 387 (467)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.39 E-value=0.45 Score=27.15 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=10.0
Q ss_pred CCCCEEEccCCcccccCCCC
Q 012260 368 EFVGEINLENNNLSGRVPFS 387 (467)
Q Consensus 368 ~~L~~L~Ls~N~l~g~ip~~ 387 (467)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.92 E-value=0.29 Score=43.56 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=16.4
Q ss_pred cCCCEEeccCC-CCCCCCchhhhCCCCCCEEEccC
Q 012260 344 KKLSYLSLDNN-KLQGNVPEEFGVLEFVGEINLEN 377 (467)
Q Consensus 344 ~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~ 377 (467)
++|+.|+|++| +||..--..+..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45555555554 24433334444555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.91 E-value=0.3 Score=43.48 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=40.0
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeec
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTG 183 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~ 183 (467)
.+++.++.|.+.+|..-.. ---+.+ ++++++|+.|++++|+.++..--..+..+++|+.|.|.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD-~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDD-WCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheeccccchhh-HHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 6677777777776542210 001122 333478888888888777766556677777777777754
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.57 E-value=0.62 Score=26.01 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=3.6
Q ss_pred CcEEeccCccC
Q 012260 297 LREVYLSGNFL 307 (467)
Q Consensus 297 L~~L~L~~n~l 307 (467)
|++|+|++|++
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33444444433
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.13 E-value=1.5 Score=25.25 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=13.4
Q ss_pred CCCCEEEccCCcccccCCC
Q 012260 368 EFVGEINLENNNLSGRVPF 386 (467)
Q Consensus 368 ~~L~~L~Ls~N~l~g~ip~ 386 (467)
++|+.|++++|+|+ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36778888888887 6775
No 89
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.84 E-value=1.1 Score=35.12 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=14.5
Q ss_pred CccchhhHHHHHHHHHHHHhhhc
Q 012260 1 MTLSSSSMRTLVFFTTLLSFLVG 23 (467)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (467)
|++.+.+++.|+|+.+|+.++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 88777666666665555555443
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.50 E-value=18 Score=36.64 Aligned_cols=60 Identities=23% Similarity=0.200 Sum_probs=27.8
Q ss_pred CCCEEEeecCCCCCCcccccCCC---CCCCEEEccCCcCCC---cccccccCCCCCCEEeccCCcC
Q 012260 175 NLRRLVLTGNGVYGGIPDKVGDL---VGLEEITLSRNKLSG---GFSFSLDKLKKLRILDLSQNQF 234 (467)
Q Consensus 175 ~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~L~~n~l 234 (467)
.+.+++++.|.....+|..+..+ ..++.++.+...+.- .-+...+.-+++++.+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 35666666666655555443222 224444444433321 1122233344566666655543
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.82 E-value=3.6 Score=23.66 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=7.7
Q ss_pred cCCCEEeccCCCCC
Q 012260 344 KKLSYLSLDNNKLQ 357 (467)
Q Consensus 344 ~~L~~L~Ls~N~l~ 357 (467)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.51 E-value=5.9 Score=23.06 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=8.2
Q ss_pred cCCCEEeccCCCCC
Q 012260 344 KKLSYLSLDNNKLQ 357 (467)
Q Consensus 344 ~~L~~L~Ls~N~l~ 357 (467)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666654
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.19 E-value=6.2 Score=40.66 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=40.1
Q ss_pred cCcCCcEEeccCccCCCC--chhHhhcCCCCcEEeccCC--CCCCCCchHHH-hcccCCCEEeccCCCCCCC
Q 012260 293 EMDKLREVYLSGNFLGGE--IPEIWESLGGIVGIGLSGT--GLVGKIPASMG-IHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 293 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N--~l~~~ip~~~~-~~l~~L~~L~Ls~N~l~~~ 359 (467)
+.+.+..+.|++|++... +...-...|+|+.|+|++| .+... .++. -....|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 456677888888887632 2222344678888888888 33311 1111 0345688888888888654
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.41 E-value=6.6 Score=40.46 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=51.0
Q ss_pred cCCCCCCeeeccccCCCCCC-hhHHhhcCcCCcEEeccCccCCCCchhHhh--cCCCCcEEeccCCCCCCCCch------
Q 012260 267 GHLKSLEFMDLSFNGFGNFG-VPTFLAEMDKLREVYLSGNFLGGEIPEIWE--SLGGIVGIGLSGTGLVGKIPA------ 337 (467)
Q Consensus 267 ~~l~~L~~L~Ls~n~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~ip~------ 337 (467)
.+.+.+..+.|++|++..+. +...-...++|..|+|++|...-.....+. ....|++|-+.+|.+....-.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 34567788889999876532 223335578899999999932211112222 234678899999998754322
Q ss_pred HHHhcccCCCEEe
Q 012260 338 SMGIHLKKLSYLS 350 (467)
Q Consensus 338 ~~~~~l~~L~~L~ 350 (467)
.+.+..|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 2222456776554
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.74 E-value=31 Score=42.81 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=21.5
Q ss_pred eccCCCCCCCCchHHHhcccCCCEEeccCCCCC
Q 012260 325 GLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 325 ~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
||++|+|+ .+|...+..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 46677776 666666656667777777777665
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.60 E-value=27 Score=19.65 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=8.0
Q ss_pred CCccEEEcccCCCcc
Q 012260 149 SSLEELVFIDNPSFV 163 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~ 163 (467)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455666666653333
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.96 E-value=1.4e+02 Score=30.55 Aligned_cols=36 Identities=14% Similarity=-0.065 Sum_probs=21.6
Q ss_pred CCCcEEeccCCCCCCCCchHHH-hcccCCCEEeccCC
Q 012260 319 GGIVGIGLSGTGLVGKIPASMG-IHLKKLSYLSLDNN 354 (467)
Q Consensus 319 ~~L~~L~Ls~N~l~~~ip~~~~-~~l~~L~~L~Ls~N 354 (467)
..+++|....|.+.|+.-.... ...+..+.+++..-
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred eeeeEeeccccccccccccccceeecccccccccccc
Confidence 3577888888888765543321 13456666766553
Done!