Query 012260
Match_columns 467
No_of_seqs 616 out of 5004
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2E-44 6.9E-49 350.8 20.3 302 29-410 2-308 (313)
2 3rgz_A Protein brassinosteroid 100.0 5.2E-44 1.8E-48 388.7 20.2 336 30-405 9-380 (768)
3 2id5_A Lingo-1, leucine rich r 100.0 7.2E-42 2.5E-46 352.1 25.6 363 57-442 5-371 (477)
4 4eco_A Uncharacterized protein 100.0 1.2E-42 4.1E-47 370.0 17.9 272 29-336 26-419 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 5.3E-42 1.8E-46 372.6 20.4 341 27-406 263-766 (876)
6 3rgz_A Protein brassinosteroid 100.0 7.7E-41 2.6E-45 363.7 22.8 282 120-410 393-744 (768)
7 3v47_A TOLL-like receptor 5B a 100.0 6E-41 2E-45 342.9 18.5 350 64-436 10-442 (455)
8 3t6q_A CD180 antigen; protein- 100.0 2.4E-40 8.1E-45 350.7 22.0 338 88-445 255-604 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-39 6.6E-44 343.7 25.8 176 265-443 419-600 (606)
10 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-39 7.2E-44 344.4 24.9 357 66-443 35-622 (635)
11 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-37 1.2E-41 320.6 23.5 188 243-436 321-515 (520)
12 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-37 1.7E-41 329.7 24.4 295 145-444 326-667 (680)
13 3o6n_A APL1; leucine-rich repe 100.0 1E-36 3.5E-41 305.5 23.1 316 87-433 45-380 (390)
14 3j0a_A TOLL-like receptor 5; m 100.0 7.6E-37 2.6E-41 335.6 23.6 105 342-447 478-609 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-36 3.7E-41 318.7 22.4 160 64-241 6-167 (549)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-36 1.2E-40 315.9 26.3 329 86-442 51-554 (562)
17 3oja_B Anopheles plasmodium-re 100.0 1.1E-35 3.9E-40 314.2 26.1 306 107-432 61-385 (597)
18 2z63_A TOLL-like receptor 4, v 100.0 7.6E-36 2.6E-40 313.6 22.0 167 266-434 392-563 (570)
19 3t6q_A CD180 antigen; protein- 100.0 1.6E-34 5.3E-39 306.0 27.4 322 63-406 13-413 (606)
20 3v47_A TOLL-like receptor 5B a 100.0 4.3E-35 1.5E-39 299.5 20.4 286 86-387 53-414 (455)
21 1ogq_A PGIP-2, polygalacturona 100.0 4.7E-36 1.6E-40 291.7 12.2 233 112-355 68-302 (313)
22 4eco_A Uncharacterized protein 100.0 5.7E-35 1.9E-39 310.8 20.0 297 86-406 205-549 (636)
23 2id5_A Lingo-1, leucine rich r 100.0 2E-34 6.9E-39 296.5 22.7 307 86-411 55-361 (477)
24 4fcg_A Uncharacterized protein 100.0 8.9E-35 3.1E-39 284.5 17.5 285 28-381 22-314 (328)
25 3zyi_A Leucine-rich repeat-con 100.0 9E-34 3.1E-38 289.7 21.6 282 124-442 57-343 (452)
26 2z80_A TOLL-like receptor 2, v 100.0 2.9E-34 1E-38 283.8 17.2 306 119-434 29-346 (353)
27 3zyj_A Leucine-rich repeat-con 100.0 1E-33 3.5E-38 288.3 21.5 270 138-441 57-331 (440)
28 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-33 7.1E-38 308.3 22.6 302 86-405 23-374 (844)
29 2z66_A Variable lymphocyte rec 100.0 8.3E-34 2.8E-38 274.9 15.5 286 124-444 10-304 (306)
30 4ecn_A Leucine-rich repeat pro 100.0 5.6E-33 1.9E-37 301.9 22.6 301 86-410 447-793 (876)
31 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-32 8.2E-37 293.2 26.4 270 64-354 6-306 (680)
32 1xku_A Decorin; proteoglycan, 100.0 6E-32 2E-36 264.7 25.7 269 122-407 32-307 (330)
33 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-32 1.2E-36 266.5 23.9 270 121-408 33-309 (332)
34 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.8E-36 262.7 27.1 269 121-404 52-330 (330)
35 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-32 1.8E-36 265.4 23.9 274 111-404 47-331 (332)
36 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-32 6.1E-37 285.0 21.7 295 86-406 20-457 (520)
37 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.5E-32 3.3E-36 282.2 21.7 144 90-258 34-181 (562)
38 3o6n_A APL1; leucine-rich repe 100.0 5.1E-32 1.7E-36 271.3 18.7 275 118-406 42-331 (390)
39 4fmz_A Internalin; leucine ric 100.0 1.9E-30 6.6E-35 255.6 28.2 262 117-405 84-345 (347)
40 2z80_A TOLL-like receptor 2, v 100.0 1.3E-31 4.5E-36 264.8 17.8 263 111-385 45-318 (353)
41 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-31 8.2E-36 278.2 20.8 166 108-281 16-183 (549)
42 1ozn_A Reticulon 4 receptor; N 100.0 6.3E-32 2.2E-36 258.9 14.2 243 198-444 32-278 (285)
43 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-31 1.3E-35 279.9 20.6 157 65-240 14-171 (606)
44 3oja_B Anopheles plasmodium-re 100.0 3.2E-31 1.1E-35 280.2 19.0 275 118-406 48-337 (597)
45 4fcg_A Uncharacterized protein 100.0 5.9E-31 2E-35 257.4 19.2 233 149-405 81-313 (328)
46 4fmz_A Internalin; leucine ric 100.0 1.3E-29 4.5E-34 249.6 29.0 285 87-410 44-328 (347)
47 2z66_A Variable lymphocyte rec 100.0 1.9E-31 6.4E-36 258.3 14.6 240 109-383 19-263 (306)
48 2z63_A TOLL-like receptor 4, v 100.0 1.2E-30 4.2E-35 273.9 19.3 190 218-413 369-563 (570)
49 1o6v_A Internalin A; bacterial 100.0 2.7E-29 9.1E-34 257.6 28.6 283 87-407 68-389 (466)
50 1o6v_A Internalin A; bacterial 100.0 6.8E-29 2.3E-33 254.6 29.3 262 87-385 46-326 (466)
51 1wwl_A Monocyte differentiatio 100.0 1.1E-31 3.8E-36 260.8 5.7 251 116-382 38-310 (312)
52 1ozn_A Reticulon 4 receptor; N 100.0 8.4E-30 2.9E-34 244.1 17.5 223 125-357 15-238 (285)
53 3zyi_A Leucine-rich repeat-con 100.0 4.9E-29 1.7E-33 254.6 22.2 229 121-358 75-304 (452)
54 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-28 5.3E-33 250.8 23.7 256 118-406 82-352 (457)
55 3zyj_A Leucine-rich repeat-con 100.0 9.7E-29 3.3E-33 251.5 21.9 228 121-358 64-293 (440)
56 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-28 8.3E-33 249.4 22.3 277 86-406 41-331 (457)
57 1wwl_A Monocyte differentiatio 100.0 1.9E-30 6.7E-35 252.0 5.5 248 145-406 40-309 (312)
58 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-28 4.5E-33 261.2 19.0 145 111-263 45-190 (635)
59 2z62_A TOLL-like receptor 4, v 100.0 3.9E-28 1.3E-32 231.4 18.4 235 174-436 28-271 (276)
60 3o53_A Protein LRIM1, AGAP0063 100.0 2.9E-29 1E-33 244.2 9.4 216 149-381 34-250 (317)
61 3o53_A Protein LRIM1, AGAP0063 100.0 1E-29 3.6E-34 247.4 5.7 238 154-409 15-253 (317)
62 1p9a_G Platelet glycoprotein I 100.0 4.7E-28 1.6E-32 232.6 17.1 211 196-416 8-218 (290)
63 3oja_A Leucine-rich immune mol 100.0 5.1E-29 1.7E-33 256.6 10.7 245 149-411 34-287 (487)
64 2z62_A TOLL-like receptor 4, v 99.9 3.1E-27 1.1E-31 225.2 18.6 230 126-386 12-242 (276)
65 2o6q_A Variable lymphocyte rec 99.9 9.6E-27 3.3E-31 221.1 20.6 184 223-410 38-222 (270)
66 1jl5_A Outer protein YOPM; leu 99.9 2.1E-26 7.3E-31 234.8 24.0 231 122-389 132-380 (454)
67 3oja_A Leucine-rich immune mol 99.9 5.8E-28 2E-32 248.7 11.4 233 166-415 22-259 (487)
68 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4E-31 236.8 20.9 256 110-408 144-431 (454)
69 1z7x_W Ribonuclease inhibitor; 99.9 8E-29 2.7E-33 253.3 2.8 280 122-406 86-411 (461)
70 2o6q_A Variable lymphocyte rec 99.9 4.1E-26 1.4E-30 216.8 20.3 198 126-332 21-218 (270)
71 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-26 2.1E-30 238.9 21.8 259 87-407 40-298 (622)
72 1z7x_W Ribonuclease inhibitor; 99.9 2E-28 6.9E-33 250.3 0.6 285 118-406 53-383 (461)
73 3rfs_A Internalin B, repeat mo 99.9 1.9E-25 6.6E-30 212.4 15.1 206 172-390 39-244 (272)
74 3rfs_A Internalin B, repeat mo 99.9 2.2E-25 7.6E-30 211.9 14.9 209 145-368 38-246 (272)
75 2ast_B S-phase kinase-associat 99.9 2E-26 6.8E-31 225.7 7.9 270 57-388 34-313 (336)
76 1p9a_G Platelet glycoprotein I 99.9 1.6E-24 5.6E-29 207.9 20.0 202 118-357 7-208 (290)
77 2ca6_A RAN GTPase-activating p 99.9 1.4E-26 4.7E-31 231.6 4.4 235 149-384 32-319 (386)
78 4glp_A Monocyte differentiatio 99.9 3.4E-25 1.2E-29 214.8 14.0 224 150-382 65-308 (310)
79 3m19_A Variable lymphocyte rec 99.9 7.1E-25 2.4E-29 205.9 15.3 184 200-413 16-200 (251)
80 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-23 3.7E-28 221.8 25.8 246 86-389 60-305 (622)
81 2ca6_A RAN GTPase-activating p 99.9 7.8E-26 2.7E-30 226.0 8.1 247 111-361 23-320 (386)
82 1h6u_A Internalin H; cell adhe 99.9 5.9E-24 2E-28 205.8 18.6 222 173-413 40-272 (308)
83 3goz_A Leucine-rich repeat-con 99.9 2.2E-25 7.6E-30 220.9 8.4 252 126-383 3-299 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 2.1E-24 7.1E-29 201.1 14.1 203 138-354 25-236 (239)
85 3goz_A Leucine-rich repeat-con 99.9 1.3E-25 4.4E-30 222.5 5.5 254 153-408 2-299 (362)
86 2ast_B S-phase kinase-associat 99.9 1.2E-24 4.1E-29 213.0 11.9 247 149-406 47-306 (336)
87 4glp_A Monocyte differentiatio 99.9 2.1E-24 7.1E-29 209.2 11.5 226 173-406 63-307 (310)
88 2xwt_C Thyrotropin receptor; s 99.9 7.6E-24 2.6E-28 197.3 13.9 178 175-381 32-218 (239)
89 3m19_A Variable lymphocyte rec 99.9 8.5E-23 2.9E-27 191.7 19.6 175 125-308 18-192 (251)
90 2v9t_B SLIT homolog 2 protein 99.9 3.9E-24 1.4E-28 196.7 9.6 189 249-443 14-204 (220)
91 3cvr_A Invasion plasmid antige 99.9 1E-23 3.4E-28 219.5 11.9 213 175-418 60-292 (571)
92 1h6u_A Internalin H; cell adhe 99.9 1.3E-22 4.6E-27 196.3 19.1 193 118-332 38-230 (308)
93 4ay9_X Follicle-stimulating ho 99.9 8.3E-23 2.8E-27 201.4 16.9 240 125-379 13-257 (350)
94 2v70_A SLIT-2, SLIT homolog 2 99.9 1.7E-23 5.9E-28 192.4 11.0 189 249-442 14-204 (220)
95 2xot_A Amphoterin-induced prot 99.9 8.5E-24 2.9E-28 209.4 8.3 217 201-447 21-250 (361)
96 2o6s_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 181.3 16.1 178 125-318 11-188 (208)
97 4ay9_X Follicle-stimulating ho 99.9 2.8E-22 9.4E-27 197.6 13.7 253 151-415 11-267 (350)
98 2o6s_A Variable lymphocyte rec 99.9 8.5E-22 2.9E-26 179.3 13.6 158 199-365 29-186 (208)
99 3ogk_B Coronatine-insensitive 99.9 6.3E-23 2.2E-27 216.2 5.3 283 118-406 189-526 (592)
100 3cvr_A Invasion plasmid antige 99.9 1.7E-21 5.9E-26 202.7 15.2 185 122-340 60-251 (571)
101 3ogk_B Coronatine-insensitive 99.8 2.7E-22 9.2E-27 211.4 5.5 304 88-405 139-500 (592)
102 3e6j_A Variable lymphocyte rec 99.8 1.3E-20 4.5E-25 174.3 13.9 155 249-410 22-176 (229)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 7.5E-20 2.6E-24 168.1 15.7 153 124-284 14-167 (220)
104 2xot_A Amphoterin-induced prot 99.8 4.4E-20 1.5E-24 182.6 15.0 176 124-308 21-202 (361)
105 2wfh_A SLIT homolog 2 protein 99.8 9.5E-21 3.3E-25 170.4 8.5 164 273-444 13-179 (193)
106 1h6t_A Internalin B; cell adhe 99.8 1.7E-19 5.8E-24 173.0 17.7 188 151-357 26-213 (291)
107 1h6t_A Internalin B; cell adhe 99.8 5.4E-20 1.8E-24 176.5 14.1 168 149-332 46-213 (291)
108 2v9t_B SLIT homolog 2 protein 99.8 1.2E-19 4.1E-24 166.7 15.5 152 125-284 15-166 (220)
109 1w8a_A SLIT protein; signaling 99.8 1.3E-20 4.6E-25 169.3 8.6 164 273-442 11-177 (192)
110 4b8c_D Glucose-repressible alc 99.8 4.9E-21 1.7E-25 205.9 6.4 225 30-313 129-359 (727)
111 1m9s_A Internalin B; cell inva 99.8 6.6E-20 2.2E-24 192.7 12.8 192 149-359 21-212 (605)
112 3e6j_A Variable lymphocyte rec 99.8 4.9E-19 1.7E-23 163.6 17.1 150 126-284 24-173 (229)
113 1m9s_A Internalin B; cell inva 99.8 1.8E-19 6E-24 189.4 15.5 173 118-310 40-212 (605)
114 1dce_A Protein (RAB geranylger 99.8 2.2E-22 7.5E-27 210.2 -7.7 120 248-374 443-566 (567)
115 2p1m_B Transport inhibitor res 99.8 2E-20 6.8E-25 197.1 5.7 135 269-405 371-518 (594)
116 4ezg_A Putative uncharacterize 99.8 8.7E-19 3E-23 158.0 14.2 151 149-308 44-194 (197)
117 2p1m_B Transport inhibitor res 99.8 6.7E-21 2.3E-25 200.7 0.3 183 220-405 287-493 (594)
118 4b8c_D Glucose-repressible alc 99.8 6.2E-20 2.1E-24 197.4 6.2 225 121-383 173-406 (727)
119 4ezg_A Putative uncharacterize 99.8 1E-18 3.5E-23 157.6 13.0 154 195-381 41-194 (197)
120 1xeu_A Internalin C; cellular 99.8 4.2E-19 1.4E-23 167.7 9.0 168 173-381 18-185 (263)
121 1dce_A Protein (RAB geranylger 99.8 1.2E-21 4.1E-26 204.6 -10.0 108 271-385 442-550 (567)
122 1w8a_A SLIT protein; signaling 99.8 2.2E-18 7.4E-23 154.8 10.0 177 249-432 11-188 (192)
123 1xeu_A Internalin C; cellular 99.7 1.4E-18 4.8E-23 164.0 8.7 149 170-332 37-185 (263)
124 2ell_A Acidic leucine-rich nuc 99.7 3E-17 1E-21 143.8 10.3 133 173-308 23-160 (168)
125 2ell_A Acidic leucine-rich nuc 99.7 5.9E-17 2E-21 141.9 11.7 133 149-284 24-161 (168)
126 2o6r_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 142.7 10.6 159 272-437 9-172 (177)
127 2je0_A Acidic leucine-rich nuc 99.7 6.5E-17 2.2E-21 138.7 9.8 108 174-283 17-126 (149)
128 2je0_A Acidic leucine-rich nuc 99.7 5.9E-17 2E-21 139.0 9.1 127 149-278 17-148 (149)
129 3sb4_A Hypothetical leucine ri 99.7 2.4E-17 8E-22 160.8 7.1 272 107-399 14-327 (329)
130 2wfh_A SLIT homolog 2 protein 99.7 3.9E-16 1.3E-20 140.1 14.1 127 124-259 13-139 (193)
131 2o6r_A Variable lymphocyte rec 99.7 7.2E-16 2.5E-20 136.2 14.3 129 124-260 10-138 (177)
132 3sb4_A Hypothetical leucine ri 99.6 1.3E-16 4.5E-21 155.5 6.0 245 120-375 48-328 (329)
133 1ds9_A Outer arm dynein; leuci 99.6 2.2E-17 7.6E-22 148.9 -3.9 126 241-374 43-180 (198)
134 3g39_A Variable lymphocyte rec 99.6 2.2E-15 7.7E-20 132.3 8.7 133 297-434 11-154 (170)
135 4fdw_A Leucine rich hypothetic 99.6 2.5E-14 8.5E-19 143.0 16.5 266 118-404 110-381 (401)
136 1ds9_A Outer arm dynein; leuci 99.6 3E-17 1E-21 148.0 -4.3 162 170-357 14-185 (198)
137 1a9n_A U2A', U2A'; complex (nu 99.6 5.1E-15 1.7E-19 130.7 8.6 58 199-258 43-100 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.6 8.6E-15 2.9E-19 129.2 9.8 105 247-357 43-153 (176)
139 4fdw_A Leucine rich hypothetic 99.6 7.9E-14 2.7E-18 139.3 18.0 248 112-378 127-380 (401)
140 2r9u_A Variable lymphocyte rec 99.5 9.8E-15 3.3E-19 128.6 8.1 107 298-410 15-122 (174)
141 2ifg_A High affinity nerve gro 99.5 1.3E-14 4.3E-19 142.4 8.6 131 299-434 12-148 (347)
142 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 120.9 12.2 106 123-236 11-116 (170)
143 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 119.6 11.8 104 124-235 15-118 (174)
144 3un9_A NLR family member X1; l 99.4 4.6E-14 1.6E-18 139.7 0.7 171 173-364 71-259 (372)
145 3un9_A NLR family member X1; l 99.4 5.9E-14 2E-18 138.9 0.4 166 149-315 72-259 (372)
146 2ifg_A High affinity nerve gro 99.3 1.9E-12 6.6E-17 126.7 9.7 102 251-357 13-116 (347)
147 4fs7_A Uncharacterized protein 99.2 2.2E-10 7.4E-15 114.2 15.7 130 264-403 247-376 (394)
148 4gt6_A Cell surface protein; l 99.1 2.1E-09 7.2E-14 107.0 18.0 139 110-255 76-214 (394)
149 2ra8_A Uncharacterized protein 99.1 2E-10 7E-15 112.7 9.8 82 170-254 135-227 (362)
150 4fs7_A Uncharacterized protein 99.1 7.2E-10 2.5E-14 110.4 13.4 254 109-378 82-376 (394)
151 3rfe_A Platelet glycoprotein I 99.0 2.5E-10 8.5E-15 94.9 5.7 94 347-443 11-109 (130)
152 2ra8_A Uncharacterized protein 99.0 4.8E-10 1.6E-14 110.0 8.5 160 238-404 164-341 (362)
153 4gt6_A Cell surface protein; l 99.0 9.5E-09 3.3E-13 102.3 17.2 278 111-404 53-368 (394)
154 4h09_A Hypothetical leucine ri 98.7 3.1E-07 1.1E-11 90.7 18.0 262 87-377 46-319 (379)
155 3rw6_A Nuclear RNA export fact 98.7 5.3E-10 1.8E-14 104.5 -3.2 80 171-252 167-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.6 2.8E-08 9.7E-13 87.9 4.3 88 293-381 63-164 (185)
157 4h09_A Hypothetical leucine ri 98.6 2.1E-06 7.3E-11 84.6 17.8 267 117-403 42-320 (379)
158 1io0_A Tropomodulin; LRR prote 98.5 5.3E-08 1.8E-12 86.1 4.9 88 269-357 64-164 (185)
159 3rw6_A Nuclear RNA export fact 98.4 8E-08 2.7E-12 89.7 3.6 80 292-374 167-257 (267)
160 3e4g_A ATP synthase subunit S, 97.9 5.4E-06 1.9E-10 71.9 4.3 83 150-233 62-150 (176)
161 3e4g_A ATP synthase subunit S, 97.9 8E-06 2.8E-10 70.8 4.1 83 175-257 62-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00028 9.5E-09 62.2 5.8 90 292-381 67-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00047 1.6E-08 60.7 5.4 11 344-354 157-167 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.00098 3.3E-08 54.7 5.6 56 323-381 12-68 (130)
165 2lz0_A Uncharacterized protein 32.7 58 0.002 24.4 4.6 38 215-253 13-50 (100)
166 2lz0_A Uncharacterized protein 32.5 80 0.0027 23.6 5.4 39 191-230 13-51 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-44 Score=350.84 Aligned_cols=302 Identities=27% Similarity=0.440 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCCCCCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCC
Q 012260 29 FLSSLEQDSVYQVLDSVNPT---IHWRSLFPDDLCSSPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPP 105 (467)
Q Consensus 29 ~~~~~~~~all~~~~~~~~~---~~W~~~~~~~C~~~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~ 105 (467)
.|.++|++||++||+++.++ .+|..+ ++||...|.||+|+... ..++|+.|+|++.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~--~~~C~~~w~gv~C~~~~-----------~~~~l~~L~L~~~-------- 60 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT--TDCCNRTWLGVLCDTDT-----------QTYRVNNLDLSGL-------- 60 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTT--SCTTTTCSTTEEECCSS-----------SCCCEEEEEEECC--------
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCC--CCCCcCCCcceEeCCCC-----------CCceEEEEECCCC--------
Confidence 58999999999999999764 478653 46663359999998611 1257777777632
Q ss_pred CCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEccc-CCCcccccchhhcCCCCCCEEEeecC
Q 012260 106 CNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFID-NPSFVGPLGGIIGSFTNLRRLVLTGN 184 (467)
Q Consensus 106 ~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~-n~~l~~~~p~~l~~l~~L~~L~L~~n 184 (467)
.+.| ...+|..+ +++ ++|++|++++ | .+.+.+|..|+++++|++|++++|
T Consensus 61 -~l~~-------------------------~~~~~~~l-~~l-~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 61 -NLPK-------------------------PYPIPSSL-ANL-PYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp -CCSS-------------------------CEECCGGG-GGC-TTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEE
T ss_pred -CccC-------------------------CcccChhH-hCC-CCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCC
Confidence 1222 01234444 666 7778888874 6 777778888888888888888888
Q ss_pred CCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCC-CCCEEEccCCcCCCCcc
Q 012260 185 GVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLT-NLLKLDLSSNVCSGKIP 263 (467)
Q Consensus 185 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p 263 (467)
++++.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..+.+++ +|++|++++|++++.+|
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 88777777777777777777777777777777777777777777777777666666666665 66666666666655555
Q ss_pred ccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcc
Q 012260 264 ESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHL 343 (467)
Q Consensus 264 ~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 343 (467)
..+..++ |++|++++|++++..|..+..+++|++|++++|.+++.+|. +. .+
T Consensus 192 ~~~~~l~--------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-~l 243 (313)
T 1ogq_A 192 PTFANLN--------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-LS 243 (313)
T ss_dssp GGGGGCC--------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC-CC
T ss_pred hHHhCCc--------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc-cc
Confidence 5554443 55555555555555555555666666666666666655544 33 67
Q ss_pred cCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCc
Q 012260 344 KKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 344 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|.. .....+ +.+++++||+.|+.+
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L-~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF-DVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS-CGGGTCSSSEEESTT
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc-ChHHhcCCCCccCCC
Confidence 88999999999999889999999999999999999999999986 444444 889999999999854
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-44 Score=388.65 Aligned_cols=336 Identities=26% Similarity=0.326 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCCCCCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCC
Q 012260 30 LSSLEQDSVYQVLDSVNPT---IHWRSLFPDDLCSSPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPC 106 (467)
Q Consensus 30 ~~~~~~~all~~~~~~~~~---~~W~~~~~~~C~~~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~ 106 (467)
..++|++||++||+++.++ .+|+.+ ++|| .|+||+|+. +||++|+|++.
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~--~~~C--~w~gv~C~~---------------~~v~~L~L~~~--------- 60 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSN--KNPC--TFDGVTCRD---------------DKVTSIDLSSK--------- 60 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTT--SCGG--GSTTEEEET---------------TEEEEEECTTS---------
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCCC--CCCc--CCcceEECC---------------CcEEEEECCCC---------
Confidence 3688999999999999754 479743 5677 599999975 79999999853
Q ss_pred CCCcc---cChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccch--hhcCCCCCCEEEe
Q 012260 107 NANST---LNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGG--IIGSFTNLRRLVL 181 (467)
Q Consensus 107 ~~~g~---l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~--~l~~l~~L~~L~L 181 (467)
.+.|. +|+.+ .++++|+.++++.+.+. .+|+.+ +.+ ++|++|+|++| .++|.+|. .++++++|++|++
T Consensus 61 ~l~g~~~~l~~~l-~~L~~L~~l~~~~~~~~---~l~~~~-~~l-~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L 133 (768)
T 3rgz_A 61 PLNVGFSAVSSSL-LSLTGLESLFLSNSHIN---GSVSGF-KCS-ASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNV 133 (768)
T ss_dssp CCCEEHHHHHHHT-TTCTTCCEEECTTSCEE---ECCCCC-CCC-TTCCEEECCSS-EEEEEGGGGGGGGGCTTCCEEEC
T ss_pred CcCCccCccChhH-hccCcccccCCcCCCcC---CCchhh-ccC-CCCCEEECCCC-cCCCcCCChHHHhCCCCCCEEEC
Confidence 45666 77665 77777777777666543 566677 777 77888888877 77777777 7777777777777
Q ss_pred ecCCCCCCccccc-CCCCCCCEEEccCCcCCCccccc---ccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCc
Q 012260 182 TGNGVYGGIPDKV-GDLVGLEEITLSRNKLSGGFSFS---LDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNV 257 (467)
Q Consensus 182 ~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 257 (467)
++|.+.+.+|..+ .++++|++|++++|++++..|.. +.++++|++|++++|.+++..+. ..+++|++|++++|+
T Consensus 134 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~ 211 (768)
T 3rgz_A 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN 211 (768)
T ss_dssp CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSC
T ss_pred cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCc
Confidence 7777777666654 66777777777777776665554 45555555555555555443332 444555555555555
Q ss_pred CCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCc----------------------CCcEEeccCccCCCCchhHh
Q 012260 258 CSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMD----------------------KLREVYLSGNFLGGEIPEIW 315 (467)
Q Consensus 258 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~----------------------~L~~L~L~~n~l~~~~p~~~ 315 (467)
+++.+|. ++++++|++|++++|++++ .+|..+..++ +|++|++++|++++.+|..+
T Consensus 212 l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 212 FSTGIPF-LGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CCSCCCB-CTTCCSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCS
T ss_pred CCCCCcc-cccCCCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHH
Confidence 5444443 4445555555555555544 4444444444 45555555555555555555
Q ss_pred hcC-CCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchh-hhCCCCCCEEEccCCcccccCCCCcccccc
Q 012260 316 ESL-GGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEE-FGVLEFVGEINLENNNLSGRVPFSAKFSTK 393 (467)
Q Consensus 316 ~~l-~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 393 (467)
... ++|++|++++|.+++.+|..+. .+++|++|++++|+++|.+|.. +..+++|++|++++|+++|.+|..+.....
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred HhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 443 7777777777777777777766 7777777777777777666654 777777788888888777777777665542
Q ss_pred cCCeeeecCCCC
Q 012260 394 VGEKLKLKGNPD 405 (467)
Q Consensus 394 ~~~~l~l~~Np~ 405 (467)
.++.+++++|..
T Consensus 369 ~L~~L~Ls~N~l 380 (768)
T 3rgz_A 369 SLLTLDLSSNNF 380 (768)
T ss_dssp TCSEEECCSSEE
T ss_pred CCcEEEccCCCc
Confidence 347788887764
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-42 Score=352.09 Aligned_cols=363 Identities=19% Similarity=0.164 Sum_probs=305.2
Q ss_pred CCC-CCCCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCC
Q 012260 57 DDL-CSSPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEK 135 (467)
Q Consensus 57 ~~C-~~~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~ 135 (467)
..| |...|..|.|... +....+.+...+++.|+|++ +....+++..|.++++|++|+|++|.+.+
T Consensus 5 ~~C~C~~~~~~v~c~~~----~l~~ip~~~~~~l~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 70 (477)
T 2id5_A 5 PRCECSAQDRAVLCHRK----RFVAVPEGIPTETRLLDLGK----------NRIKTLNQDEFASFPHLEELELNENIVSA 70 (477)
T ss_dssp TTCEEETTTTEEECCSC----CCSSCCSCCCTTCSEEECCS----------SCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred CCCeECCCCCEEEeCCC----CcCcCCCCCCCCCcEEECCC----------CccceECHhHccCCCCCCEEECCCCccCE
Confidence 345 4446889999861 22222333446788999984 33455666667999999999999998874
Q ss_pred CcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCccc
Q 012260 136 QVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFS 215 (467)
Q Consensus 136 ~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 215 (467)
..|..+ .++ ++|++|+|++| .+++..+..|.++++|++|++++|++.+..|..|.++++|++|++++|.+++..+
T Consensus 71 --~~~~~~-~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 71 --VEPGAF-NNL-FNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp --ECTTTT-TTC-TTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred --eChhhh-hCC-ccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 446677 899 99999999999 8988666778999999999999999999889999999999999999999999889
Q ss_pred ccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCc
Q 012260 216 FSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMD 295 (467)
Q Consensus 216 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~ 295 (467)
..|.++++|++|++++|++++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|...+ .+|.......
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~ 224 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGL 224 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC-EECTTTTTTC
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc-ccCcccccCc
Confidence 999999999999999999998878889999999999999999998888899999999999999998877 6776666677
Q ss_pred CCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEc
Q 012260 296 KLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINL 375 (467)
Q Consensus 296 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 375 (467)
+|+.|++++|++++..+..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|++++..|..+..+++|+.|+|
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT-TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc-ccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 999999999999977778899999999999999999955555555 8999999999999999998999999999999999
Q ss_pred cCCcccccCCCCc-ccccccCCeeeecCCCCCCcCcccccCCCCC--CCCCCcccCCCCCCCcccccccc
Q 012260 376 ENNNLSGRVPFSA-KFSTKVGEKLKLKGNPDLCIDEKFSIGKNAS--GSIGQLKLCKKPDNPKAAMFSDA 442 (467)
Q Consensus 376 s~N~l~g~ip~~~-~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~--~~~~~~~~C~~p~~~~g~~~~d~ 442 (467)
++|++++ +|... ..... ++.+++++|||.|+|++.|+.+... ........|..|...+|....|+
T Consensus 304 ~~N~l~~-~~~~~~~~l~~-L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~ 371 (477)
T 2id5_A 304 SGNQLTT-LEESVFHSVGN-LETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDF 371 (477)
T ss_dssp CSSCCSC-CCGGGBSCGGG-CCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGS
T ss_pred CCCcCce-eCHhHcCCCcc-cCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhC
Confidence 9999994 55443 33334 4899999999999999998765432 12234579999999888666543
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-42 Score=370.02 Aligned_cols=272 Identities=17% Similarity=0.234 Sum_probs=208.3
Q ss_pred CCCHHHHHHHHHHHHhcCCC------------CCCCCCCCCCCCCCCC---ceeEcCCCCCCCCcccccCCccceeEEEe
Q 012260 29 FLSSLEQDSVYQVLDSVNPT------------IHWRSLFPDDLCSSPP---HGVVCDYFTISANDTVSSQTETVHITELS 93 (467)
Q Consensus 29 ~~~~~~~~all~~~~~~~~~------------~~W~~~~~~~C~~~~w---~gv~C~~~~~~~~~~~~~~~~~~~v~~L~ 93 (467)
+...+|++||.++++++.++ .+|+.. .+|| .| .||+|+. .+||++|+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c--~w~~~~GV~C~~--------------~~~V~~L~ 87 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELD--MWGAQPGVSLNS--------------NGRVTGLS 87 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGG--GTTCCTTEEECT--------------TCCEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCcc--cccCCCCeEEcC--------------CCCEEEEE
Confidence 34467999999999997543 157643 4555 49 9999987 37999999
Q ss_pred cCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccC-------C--------------------------------
Q 012260 94 FGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFT-------E-------------------------------- 134 (467)
Q Consensus 94 L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~-------~-------------------------------- 134 (467)
|++ +++.|.+|+.+ +++++|++|+|++|.+ +
T Consensus 88 L~~---------~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 88 LEG---------FGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CTT---------SCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred ecC---------cccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 985 46789999888 9999999999998743 0
Q ss_pred ------------------------------------CCcCCCCCCCccccCCccEEEcccCCCcccc-------------
Q 012260 135 ------------------------------------KQVPVPDNIPASFGSSLEELVFIDNPSFVGP------------- 165 (467)
Q Consensus 135 ------------------------------------~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~------------- 165 (467)
....||+.+ +++ ++|++|++++| .++|.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l-~~l-~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV-MRL-TKLRQFYMGNS-PFVAENICEAWENENSEY 234 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGC-TTCCEEEEESC-CCCGGGBSSSCSCTTSHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHH-hcc-cCCCEEECcCC-ccccccccccccccccch
Confidence 011277777 888 89999999999 89986
Q ss_pred ----cchhhc--CCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCc-CCC-cccccccCC------CCCCEEeccC
Q 012260 166 ----LGGIIG--SFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNK-LSG-GFSFSLDKL------KKLRILDLSQ 231 (467)
Q Consensus 166 ----~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l------~~L~~L~L~~ 231 (467)
+|..++ ++++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 999988 99999999999999999999999999999999999998 888 788888776 8999999999
Q ss_pred CcCCCCchh--hhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcC-CcEEeccCccCC
Q 012260 232 NQFDGNVPE--EMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDK-LREVYLSGNFLG 308 (467)
Q Consensus 232 n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~-L~~L~L~~n~l~ 308 (467)
|+++ .+|. .++++++|++|++++|+++|.+| .++.+++|++|++++|+++. +|..+..+++ |++|++++|.++
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE--CCTTSEEECTTCCEEECCSSCCS
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc--ccHhhhhhcccCcEEEccCCcCc
Confidence 9998 7787 88899999999999998887777 77666677777776666653 4555555655 666666666655
Q ss_pred CCchhHhhcCC--CCcEEeccCCCCCCCCc
Q 012260 309 GEIPEIWESLG--GIVGIGLSGTGLVGKIP 336 (467)
Q Consensus 309 ~~~p~~~~~l~--~L~~L~Ls~N~l~~~ip 336 (467)
.+|..+...+ +|++|++++|.+++.+|
T Consensus 391 -~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred -ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 4444443322 44444444444444433
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.3e-42 Score=372.64 Aligned_cols=341 Identities=18% Similarity=0.228 Sum_probs=253.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCCCC----CCCC-CCCCC------------ceeEcCCCCCCCCcccccCCcccee
Q 012260 27 QPFLSSLEQDSVYQVLDSVNPTIHWRSLF----PDDL-CSSPP------------HGVVCDYFTISANDTVSSQTETVHI 89 (467)
Q Consensus 27 ~~~~~~~~~~all~~~~~~~~~~~W~~~~----~~~C-~~~~w------------~gv~C~~~~~~~~~~~~~~~~~~~v 89 (467)
.+++..+|++||++||+++.++ +|+.+. .++| | .| .||+|+. .+||
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C--~W~~~~~~~~w~~~~GV~C~~--------------~~~V 325 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSL--NWNFNKELDMWGDQPGVDLDN--------------NGRV 325 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCC--SCCCSSCGGGTTCCTTEEECT--------------TSCE
T ss_pred ccccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCcc--ccccccccccccCcCceEecC--------------CCCE
Confidence 3445678999999999999654 897653 2442 4 59 9999986 3799
Q ss_pred EEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEec-ccccCCCC--------------------------------
Q 012260 90 TELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFF-YKCFTEKQ-------------------------------- 136 (467)
Q Consensus 90 ~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L-~~~~~~~~-------------------------------- 136 (467)
++|+|++ +++.|.+|+.+ +++++|++|+| ++|.+.+.
T Consensus 326 ~~L~Ls~---------~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~ 395 (876)
T 4ecn_A 326 TGLSLAG---------FGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395 (876)
T ss_dssp EEEECTT---------TCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred EEEECcc---------CCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence 9999985 46789999988 99999999999 66643221
Q ss_pred ------------------------------------------cCCCCCCCccccCCccEEEcccCCCccc----------
Q 012260 137 ------------------------------------------VPVPDNIPASFGSSLEELVFIDNPSFVG---------- 164 (467)
Q Consensus 137 ------------------------------------------~~ip~~l~~~l~~~L~~L~L~~n~~l~~---------- 164 (467)
..||..+ +++ ++|++|+|++| .+++
T Consensus 396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L-~~L~~L~Ls~N-~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRL-TKLQIIYFANS-PFTYDNIAVDWEDA 472 (876)
T ss_dssp GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGC-TTCCEEEEESC-CCCGGGBSSSCSCT
T ss_pred cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcC-CCCCEEECcCC-cCCCCccccccccc
Confidence 0177777 888 89999999999 8998
Q ss_pred -------ccchhhc--CCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCc-CCC-cccccccCCC-------CCCE
Q 012260 165 -------PLGGIIG--SFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNK-LSG-GFSFSLDKLK-------KLRI 226 (467)
Q Consensus 165 -------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~ 226 (467)
.+|..++ ++++|++|+|++|++.+.+|..++++++|++|++++|+ +++ .+|..+.+++ +|++
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 4899887 99999999999999999999999999999999999998 888 7887666554 9999
Q ss_pred EeccCCcCCCCchh--hhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcC-CcEEecc
Q 012260 227 LDLSQNQFDGNVPE--EMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDK-LREVYLS 303 (467)
Q Consensus 227 L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~-L~~L~L~ 303 (467)
|++++|+++ .+|. .++++++|++|++++|+++ .+| .++.+++|++|++++|+++. +|..+..+++ |+.|+|+
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC--CCTTSCEECTTCCEEECC
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcccc--chHHHhhccccCCEEECc
Confidence 999999999 7887 8999999999999999988 777 88888899999999988884 6777778887 8888888
Q ss_pred CccCCCCchhHhhcCCC--CcEEeccCCCCCC----------------------------CCchHHHhcccCCCEEeccC
Q 012260 304 GNFLGGEIPEIWESLGG--IVGIGLSGTGLVG----------------------------KIPASMGIHLKKLSYLSLDN 353 (467)
Q Consensus 304 ~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~----------------------------~ip~~~~~~l~~L~~L~Ls~ 353 (467)
+|.++ .+|..+...+. |+.|++++|++++ .+|..++..+++|+.|+|++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 88877 55555444322 5555555555444 44544443455566666666
Q ss_pred CCCCCCCchhhhCC--------CCCCEEEccCCcccccCCCCcc--cccccCCeeeecCCCCC
Q 012260 354 NKLQGNVPEEFGVL--------EFVGEINLENNNLSGRVPFSAK--FSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 354 N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~g~ip~~~~--~~~~~~~~l~l~~Np~~ 406 (467)
|+++ .+|..+... ++|+.|+|++|+++ .+|..+. ....+ +.|++++|+..
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~ 766 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFS 766 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCS
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCC
Confidence 6655 344332221 15666666666665 5555443 22222 56666666543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.7e-41 Score=363.70 Aligned_cols=282 Identities=32% Similarity=0.489 Sum_probs=216.3
Q ss_pred CCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCC
Q 012260 120 FKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVG 199 (467)
Q Consensus 120 l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 199 (467)
+++|++|++++|.+.+ .+|..+ +++ ++|++|++++| .+++.+|..++++++|++|++++|.+++.+|..+..+++
T Consensus 393 ~~~L~~L~L~~n~l~~--~~p~~l-~~l-~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG--KIPPTL-SNC-SELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TCCCCEEECCSSEEEE--ECCGGG-GGC-TTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred cCCccEEECCCCcccc--ccCHHH-hcC-CCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 4556666666665544 566666 667 77777777777 777777777777778888888888877777777777788
Q ss_pred CCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccc
Q 012260 200 LEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSF 279 (467)
Q Consensus 200 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 279 (467)
|++|++++|++++.+|..+.++++|++|++++|++++.+|..++++++|++|++++|++++.+|..+.++++|++|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 88888888888777777787888888888888888877787788888888888888888777788888888888888888
Q ss_pred cCCCCCChhHHh--------------------------------------------------------------------
Q 012260 280 NGFGNFGVPTFL-------------------------------------------------------------------- 291 (467)
Q Consensus 280 n~l~~~~~p~~~-------------------------------------------------------------------- 291 (467)
|.+++ .+|..+
T Consensus 548 N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 548 NLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CccCC-cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 77765 455433
Q ss_pred --hcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCC
Q 012260 292 --AEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEF 369 (467)
Q Consensus 292 --~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 369 (467)
..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++ .+++|++|||++|+++|.+|..+..++.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~-~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh-CCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 2245677888888888888888888888888888888888888888887 7888888888888888888888888888
Q ss_pred CCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCc
Q 012260 370 VGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 370 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
|++||+++|+++|.+|....+. .. ....+.|||.+|+.+
T Consensus 706 L~~L~ls~N~l~g~iP~~~~~~-~~-~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQFE-TF-PPAKFLNNPGLCGYP 744 (768)
T ss_dssp CSEEECCSSEEEEECCSSSSGG-GS-CGGGGCSCTEEESTT
T ss_pred CCEEECcCCcccccCCCchhhc-cC-CHHHhcCCchhcCCC
Confidence 8888888888888888764332 22 455677888888754
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6e-41 Score=342.94 Aligned_cols=350 Identities=21% Similarity=0.209 Sum_probs=276.9
Q ss_pred Cce--eEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCC
Q 012260 64 PHG--VVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPD 141 (467)
Q Consensus 64 w~g--v~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~ 141 (467)
|.+ |.|+... ....+. ...+++.|+|++ +....+++..|.++++|++|++++|.+.+ .++.
T Consensus 10 ~~~~~~~c~~~~----l~~lp~-l~~~l~~L~Ls~----------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~ 72 (455)
T 3v47_A 10 VIGYNAICINRG----LHQVPE-LPAHVNYVDLSL----------NSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRN 72 (455)
T ss_dssp EETTEEECCSSC----CSSCCC-CCTTCCEEECCS----------SCCCEECTTTTSSCTTCCEEECCCCSTTC--EECT
T ss_pred EEccccCcCCCC----cccCCC-CCCccCEEEecC----------CccCcCChhHhccCccccEEECcCCcccc--eECc
Confidence 544 8887622 111111 346899999984 23445555556999999999999987764 5654
Q ss_pred CCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccc--cCCCCCCCEEEccCCcCCCccccc-c
Q 012260 142 NIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDK--VGDLVGLEEITLSRNKLSGGFSFS-L 218 (467)
Q Consensus 142 ~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~-l 218 (467)
..+.++ ++|++|++++| .+++..|..|+++++|++|++++|++++.+|.. ++.+++|++|++++|.+++..|.. +
T Consensus 73 ~~~~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (455)
T 3v47_A 73 NTFRGL-SSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150 (455)
T ss_dssp TTTTTC-TTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGG
T ss_pred cccccc-ccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccccc
Confidence 433888 99999999999 899888999999999999999999998866554 899999999999999999887876 8
Q ss_pred cCCCCCCEEeccCCcCCCCchhhhhCC----------------------------------CCCCEEEccCCcCCCCccc
Q 012260 219 DKLKKLRILDLSQNQFDGNVPEEMGNL----------------------------------TNLLKLDLSSNVCSGKIPE 264 (467)
Q Consensus 219 ~~l~~L~~L~L~~n~l~~~~p~~l~~l----------------------------------~~L~~L~L~~n~l~~~~p~ 264 (467)
.++++|++|++++|++++..+..+..+ ++|++|++++|++++..|.
T Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 899999999999999988777666543 6788888888887765544
Q ss_pred cccC---------------------------------------CCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCc
Q 012260 265 SLGH---------------------------------------LKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGN 305 (467)
Q Consensus 265 ~~~~---------------------------------------l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 305 (467)
.+.. .++|++|++++|++++ ..|..+..+++|++|++++|
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTS
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcccCCCCCEEECCCC
Confidence 3321 2578899999999888 67888899999999999999
Q ss_pred cCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCC
Q 012260 306 FLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVP 385 (467)
Q Consensus 306 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 385 (467)
++++..|..+..+++|++|++++|.+++..|..+. .+++|++|+|++|++++..|..+..+++|++|++++|++++ +|
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~ 387 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP 387 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CC
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhc-CcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CC
Confidence 99998899999999999999999999866677766 89999999999999998889999999999999999999995 55
Q ss_pred CCc-ccccccCCeeeecCCCCCCcCc-ccccCCC---CCCCCCCcccCCCCCCCcc
Q 012260 386 FSA-KFSTKVGEKLKLKGNPDLCIDE-KFSIGKN---ASGSIGQLKLCKKPDNPKA 436 (467)
Q Consensus 386 ~~~-~~~~~~~~~l~l~~Np~~C~c~-~~~~~~~---~~~~~~~~~~C~~p~~~~g 436 (467)
... ..... ++.+++++||+.|+|+ ..|+.++ ..........|..|....+
T Consensus 388 ~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~~~~~~~ 442 (455)
T 3v47_A 388 DGIFDRLTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVR 442 (455)
T ss_dssp TTTTTTCTT-CCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTTTCCBGG
T ss_pred HhHhccCCc-ccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeeecCCCcccc
Confidence 543 34444 4899999999999998 3333322 1222333468888765544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-40 Score=350.69 Aligned_cols=338 Identities=20% Similarity=0.244 Sum_probs=295.9
Q ss_pred eeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccc
Q 012260 88 HITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLG 167 (467)
Q Consensus 88 ~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p 167 (467)
+++.+++++ +....+++..|.++++|++|++++|.+. .+|..+ ..+ ++|++|++++| .+.+..|
T Consensus 255 ~L~~L~l~~----------n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~lp~~l-~~l-~~L~~L~l~~n-~l~~~~~ 318 (606)
T 3t6q_A 255 SVESINLQK----------HYFFNISSNTFHCFSGLQELDLTATHLS---ELPSGL-VGL-STLKKLVLSAN-KFENLCQ 318 (606)
T ss_dssp EEEEEECTT----------CCCSSCCTTTTTTCTTCSEEECTTSCCS---CCCSSC-CSC-TTCCEEECTTC-CCSBGGG
T ss_pred ceeEEEeec----------CccCccCHHHhccccCCCEEeccCCccC---CCChhh-ccc-ccCCEEECccC-CcCcCch
Confidence 788888874 3456677777799999999999999887 799998 889 99999999999 9999889
Q ss_pred hhhcCCCCCCEEEeecCCCCCCccc-ccCCCCCCCEEEccCCcCCCcc--cccccCCCCCCEEeccCCcCCCCchhhhhC
Q 012260 168 GIIGSFTNLRRLVLTGNGVYGGIPD-KVGDLVGLEEITLSRNKLSGGF--SFSLDKLKKLRILDLSQNQFDGNVPEEMGN 244 (467)
Q Consensus 168 ~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 244 (467)
..+.++++|++|++++|.+.+.+|. .++.+++|++|++++|.+++.. +..+.++++|++|++++|++++..|..+.+
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 9999999999999999999877755 5899999999999999999776 778999999999999999999888999999
Q ss_pred CCCCCEEEccCCcCCCCccc-cccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCC---chhHhhcCCC
Q 012260 245 LTNLLKLDLSSNVCSGKIPE-SLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGE---IPEIWESLGG 320 (467)
Q Consensus 245 l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~ 320 (467)
+++|++|++++|++++..+. .+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++. .+..+..+++
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT-TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC-cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 99999999999999877665 48999999999999999998 6788889999999999999999863 3367899999
Q ss_pred CcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeee
Q 012260 321 IVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKL 400 (467)
Q Consensus 321 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l 400 (467)
|++|++++|++++..|..+. .+++|++|+|++|++++..|..+..++.| +|++++|++++..|..+.....+ +.+++
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L-~~L~l 554 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ-RTINL 554 (606)
T ss_dssp CCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS-SEEEC
T ss_pred ccEEECCCCccCccChhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC-CEEeC
Confidence 99999999999977787777 89999999999999999999999999999 99999999997777666555555 89999
Q ss_pred cCCCCCCcCcccccCCCCCC-----CCCCcccCCCCCCCccccccccccc
Q 012260 401 KGNPDLCIDEKFSIGKNASG-----SIGQLKLCKKPDNPKAAMFSDATAA 445 (467)
Q Consensus 401 ~~Np~~C~c~~~~~~~~~~~-----~~~~~~~C~~p~~~~g~~~~d~~~~ 445 (467)
++|||.|+|+..|+.++... .......|++|+..+|....|+...
T Consensus 555 ~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~ 604 (606)
T 3t6q_A 555 RQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604 (606)
T ss_dssp TTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCCC
T ss_pred CCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeecc
Confidence 99999999997765543221 1233478999999999888877653
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-39 Score=343.71 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=124.7
Q ss_pred cccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCC-CchhHhhcCCCCcEEeccCCCCCCCCchHHHhcc
Q 012260 265 SLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGG-EIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHL 343 (467)
Q Consensus 265 ~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 343 (467)
.+.++++|++|++++|.+++ ..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..+. .+
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l 496 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TL 496 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TC
T ss_pred hhhccccCCEEECcCCCCCc-cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc-cc
Confidence 34445555555555555555 455566677777777777777776 3677788888999999999999877777776 89
Q ss_pred cCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCCCC--
Q 012260 344 KKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASGS-- 421 (467)
Q Consensus 344 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~~-- 421 (467)
++|++|+|++|++++.+|..+..+++|+.|++++|+++ .+|..+....+.++.+++++|||.|+|+..|+.++....
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~ 575 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQ 575 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSS
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcc
Confidence 99999999999999888999999999999999999999 788776555544589999999999999988776654332
Q ss_pred ---CCCcccCCCCCCCccccccccc
Q 012260 422 ---IGQLKLCKKPDNPKAAMFSDAT 443 (467)
Q Consensus 422 ---~~~~~~C~~p~~~~g~~~~d~~ 443 (467)
......|..|+..+|....|+.
T Consensus 576 ~~~~~~~~~C~~p~~~~~~~l~~~~ 600 (606)
T 3vq2_A 576 FLVNVEQMTCATPVEMNTSLVLDFN 600 (606)
T ss_dssp SBSSGGGCCCC--------------
T ss_pred cccCCccceeCCChHhCCCEeeecc
Confidence 1234799999999997666654
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-39 Score=344.37 Aligned_cols=357 Identities=20% Similarity=0.217 Sum_probs=267.6
Q ss_pred eeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCc
Q 012260 66 GVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPA 145 (467)
Q Consensus 66 gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~ 145 (467)
.|.|.. .+-+..+.+....++.|+|++ |....+++..|.++++|++|+|++|.+. .+|+..+.
T Consensus 35 ~~~c~~----~~l~~vP~~lp~~~~~LdLs~----------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~ 97 (635)
T 4g8a_A 35 TYQCME----LNFYKIPDNLPFSTKNLDLSF----------NPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQ 97 (635)
T ss_dssp EEECTT----SCCSSCCSSSCTTCCEEECTT----------SCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTT
T ss_pred EEECCC----CCcCccCCCCCcCCCEEEeeC----------CCCCCCCHHHHhCCCCCCEEECCCCcCC---CcChhHhc
Confidence 467765 223333344556899999984 4567788888899999999999999987 67766548
Q ss_pred cccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCc-ccccccCCCCC
Q 012260 146 SFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGG-FSFSLDKLKKL 224 (467)
Q Consensus 146 ~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L 224 (467)
++ ++|++|+|++| .+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|
T Consensus 98 ~L-~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 98 SL-SHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp TC-TTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CC-CCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 99 99999999999 99987778899999999999999999888888899999999999999999864 67888999999
Q ss_pred CEEeccCCcCCCCchhhhhCCC----------------------------------------------------------
Q 012260 225 RILDLSQNQFDGNVPEEMGNLT---------------------------------------------------------- 246 (467)
Q Consensus 225 ~~L~L~~n~l~~~~p~~l~~l~---------------------------------------------------------- 246 (467)
++|++++|++++..+..+..+.
T Consensus 176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~ 255 (635)
T 4g8a_A 176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 255 (635)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEE
T ss_pred hhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccc
Confidence 9999999988755444332211
Q ss_pred -------------------------------------------------------------------------CCCEEEc
Q 012260 247 -------------------------------------------------------------------------NLLKLDL 253 (467)
Q Consensus 247 -------------------------------------------------------------------------~L~~L~L 253 (467)
.|+.|++
T Consensus 256 l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l 335 (635)
T 4g8a_A 256 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 335 (635)
T ss_dssp EEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhc
Confidence 1122222
Q ss_pred cCCcCCCCcc-------------------ccccCCCCCCeeeccccCC--------------------------------
Q 012260 254 SSNVCSGKIP-------------------ESLGHLKSLEFMDLSFNGF-------------------------------- 282 (467)
Q Consensus 254 ~~n~l~~~~p-------------------~~~~~l~~L~~L~Ls~n~l-------------------------------- 282 (467)
.+|.+.+..+ .....+++|+.++++.|.+
T Consensus 336 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 336 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp ESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred ccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc
Confidence 2221110000 0001223344444443322
Q ss_pred ------------------------------------------CCCChhHHhhcCcCCcEEeccCccC-CCCchhHhhcCC
Q 012260 283 ------------------------------------------GNFGVPTFLAEMDKLREVYLSGNFL-GGEIPEIWESLG 319 (467)
Q Consensus 283 ------------------------------------------~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~ 319 (467)
.. ..+..+..++.|+.|++++|.+ .+..|..+..++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccccccchhhhhcccccccccccccccccccccccccccccc-ccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 22 2233345566777777777764 345677888899
Q ss_pred CCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeee
Q 012260 320 GIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLK 399 (467)
Q Consensus 320 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~ 399 (467)
+|++|+|++|++++..|..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|+|++..|..+......++.++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred ccCEEECCCCccCCcChHHHc-CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 999999999999977777776 8999999999999999988999999999999999999999888877765544458999
Q ss_pred ecCCCCCCcCcccccCCCCC---CC--CCCcccCCCCCCCccccccccc
Q 012260 400 LKGNPDLCIDEKFSIGKNAS---GS--IGQLKLCKKPDNPKAAMFSDAT 443 (467)
Q Consensus 400 l~~Np~~C~c~~~~~~~~~~---~~--~~~~~~C~~p~~~~g~~~~d~~ 443 (467)
+++|||.|+|++.||.++.. .. ....++|++|+..+|..+.++.
T Consensus 574 L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 574 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred eeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence 99999999999988766421 11 1234789999999997777664
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=320.60 Aligned_cols=188 Identities=22% Similarity=0.319 Sum_probs=145.7
Q ss_pred hCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCC-ChhHHhhcCcCCcEEeccCccCCCCchh-HhhcCCC
Q 012260 243 GNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNF-GVPTFLAEMDKLREVYLSGNFLGGEIPE-IWESLGG 320 (467)
Q Consensus 243 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~ 320 (467)
..+++|++|++++|++++.+|..+..+++|++|++++|+++++ .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 5667888888888888877788888888888888888888752 2456678888888888888888874554 3677788
Q ss_pred CcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCC-cccccccCCeee
Q 012260 321 IVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFS-AKFSTKVGEKLK 399 (467)
Q Consensus 321 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~~~l~ 399 (467)
|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..... ++.++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~-L~~L~ 474 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS-LQKIW 474 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC---TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEE
T ss_pred CCEEECcCCCCCcchhhhhc---ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc-ccEEE
Confidence 88888888888877665432 68999999999999 78888889999999999999999 78876 434434 48999
Q ss_pred ecCCCCCCcCccccc-CCC---CCCCCCCcccCCCCCCCcc
Q 012260 400 LKGNPDLCIDEKFSI-GKN---ASGSIGQLKLCKKPDNPKA 436 (467)
Q Consensus 400 l~~Np~~C~c~~~~~-~~~---~~~~~~~~~~C~~p~~~~g 436 (467)
+++||+.|+|+..|+ ..+ .........+|+.|+.+.+
T Consensus 475 l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~ 515 (520)
T 2z7x_B 475 LHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVR 515 (520)
T ss_dssp CCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTCCBGG
T ss_pred CcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcccchh
Confidence 999999999998877 432 2222334579999965443
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-37 Score=329.70 Aligned_cols=295 Identities=20% Similarity=0.190 Sum_probs=190.5
Q ss_pred ccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecC----------------------------CCCCCcccccCC
Q 012260 145 ASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGN----------------------------GVYGGIPDKVGD 196 (467)
Q Consensus 145 ~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n----------------------------~l~~~~p~~~~~ 196 (467)
..+ ++|++|++++| .+++..|..|.++++|++|++++| ++++..|..+..
T Consensus 326 ~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 326 QWL-KCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTC-TTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred ccC-CCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 444 56666666666 666655555555555555555443 343444455555
Q ss_pred CCCCCEEEccCCcCCCccc-ccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCC--CCccccccCCCCCC
Q 012260 197 LVGLEEITLSRNKLSGGFS-FSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCS--GKIPESLGHLKSLE 273 (467)
Q Consensus 197 l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~ 273 (467)
+++|++|++++|.+++.+| ..+.++++|++|++++|++++..+..+..+++|+.|++++|.++ +.+|..+.++++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 5666666666666554443 45555666666666666665555556666666666666666654 45677888888899
Q ss_pred eeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCch--------hHhhcCCCCcEEeccCCCCCCCCchHHHhcccC
Q 012260 274 FMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIP--------EIWESLGGIVGIGLSGTGLVGKIPASMGIHLKK 345 (467)
Q Consensus 274 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 345 (467)
+|++++|++++ ..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|...+..+++
T Consensus 484 ~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~ 561 (680)
T 1ziw_A 484 ILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 561 (680)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred EEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccC
Confidence 99999988887 455667888899999999998875422 23678889999999999998 777654448999
Q ss_pred CCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcc-cccccCCeeeecCCCCCCcCcc-cccCCCCCCC--
Q 012260 346 LSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAK-FSTKVGEKLKLKGNPDLCIDEK-FSIGKNASGS-- 421 (467)
Q Consensus 346 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~l~l~~Np~~C~c~~-~~~~~~~~~~-- 421 (467)
|++|+|++|++++..+..|..+++|+.|++++|++++..|..+. .... ++.+++++|||.|+|+. .||.++....
T Consensus 562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~ 640 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWINETHT 640 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT-CSEEECTTCCCCBCCCCCSSEECCSSCC--
T ss_pred cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc-cCEEEccCCCcccCCccHHHHHHHHHhcCc
Confidence 99999999999977777788999999999999999965554333 2333 48999999999999996 7877654322
Q ss_pred -C---CCcccCCCCCCCcccccccccc
Q 012260 422 -I---GQLKLCKKPDNPKAAMFSDATA 444 (467)
Q Consensus 422 -~---~~~~~C~~p~~~~g~~~~d~~~ 444 (467)
+ .....|++|+..+|....++..
T Consensus 641 ~~~~~~~~~~C~~p~~~~g~~l~~~~~ 667 (680)
T 1ziw_A 641 NIPELSSHYLCNTPPHYHGFPVRLFDT 667 (680)
T ss_dssp ---------------------------
T ss_pred ccccccCCcEECCchHHCCCcccccCh
Confidence 2 2346999999999966655543
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-36 Score=305.52 Aligned_cols=316 Identities=18% Similarity=0.163 Sum_probs=256.6
Q ss_pred ceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCC-CCCccccCCccEEEcccCCCcccc
Q 012260 87 VHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPD-NIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 87 ~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~-~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
.+++.+++++ +..+.+|+.+|.++++|++|++++|.+. .++. .+ ..+ ++|++|++++| .+++.
T Consensus 45 ~~l~~l~l~~----------~~l~~l~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~-~~l-~~L~~L~L~~n-~l~~~ 108 (390)
T 3o6n_A 45 NNQKIVTFKN----------STMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAF-AYA-HTIQKLYMGFN-AIRYL 108 (390)
T ss_dssp CCCSEEEEES----------CEESEECTHHHHHCCCCSEEECTTSCCC---EECTTTT-TTC-TTCCEEECCSS-CCCCC
T ss_pred CCceEEEecC----------CchhhCChhHhcccccCcEEECCCCccc---ccChhhc-cCC-CCcCEEECCCC-CCCcC
Confidence 4666777763 4567899998899999999999999887 4554 55 888 99999999999 99998
Q ss_pred cchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCC
Q 012260 166 LGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNL 245 (467)
Q Consensus 166 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 245 (467)
.|..|+++++|++|++++|+++...+..|+++++|++|++++|.+++..+..+.++++|++|++++|++++.. +..+
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l 185 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI 185 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGC
T ss_pred CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccc
Confidence 8888999999999999999997666666799999999999999999888888999999999999999998653 3445
Q ss_pred CCCCEEEccCCcCCC------------------CccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccC
Q 012260 246 TNLLKLDLSSNVCSG------------------KIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFL 307 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~------------------~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 307 (467)
++|+.|++++|.+++ .+|. ...++|++|++++|++++ . ..+..+++|++|++++|.+
T Consensus 186 ~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCC
T ss_pred cccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcC
Confidence 555555555544432 1222 224689999999999988 2 5678999999999999999
Q ss_pred CCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCC
Q 012260 308 GGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFS 387 (467)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~ 387 (467)
++..|..+..+++|++|++++|+++ .+|..+. .+++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~-- 334 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-- 334 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--
T ss_pred CCcChhHccccccCCEEECCCCcCc-ccCcccC-CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--
Confidence 9998999999999999999999998 5676665 7899999999999999 57778889999999999999998 455
Q ss_pred cccccccCCeeeecCCCCCCcCcccccCCCCCCCCCC-cccCCCCCC
Q 012260 388 AKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASGSIGQ-LKLCKKPDN 433 (467)
Q Consensus 388 ~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~~~~~-~~~C~~p~~ 433 (467)
+.....+ +.+++++|||.|+|...++.......+.. ...|..+..
T Consensus 335 ~~~~~~L-~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 380 (390)
T 3o6n_A 335 LSTHHTL-KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ 380 (390)
T ss_dssp CCTTCCC-SEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTTCE
T ss_pred chhhccC-CEEEcCCCCccchhHHHHHHHHHhhcccccCceeccccc
Confidence 2233344 89999999999999877766544333322 266876544
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=335.58 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=65.0
Q ss_pred cccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcc-------------------cccccCCeeeecC
Q 012260 342 HLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAK-------------------FSTKVGEKLKLKG 402 (467)
Q Consensus 342 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~-------------------~~~~~~~~l~l~~ 402 (467)
.+++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..+. ... .++.+++++
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~-~L~~l~l~~ 556 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFV-SLSVLDITH 556 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCS-SCCEEEEEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhC-CcCEEEecC
Confidence 345555555555555555566667777777777777777743332211 011 236889999
Q ss_pred CCCCCcCcccccCCCCC------CCCCCcccCCCCCCCccccccc--ccccCC
Q 012260 403 NPDLCIDEKFSIGKNAS------GSIGQLKLCKKPDNPKAAMFSD--ATAASP 447 (467)
Q Consensus 403 Np~~C~c~~~~~~~~~~------~~~~~~~~C~~p~~~~g~~~~d--~~~~~~ 447 (467)
|||.|+|++.||.++.. ...+....|..|+..+|....+ ...|..
T Consensus 557 Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~~ 609 (844)
T 3j0a_A 557 NKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDE 609 (844)
T ss_dssp ECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC--
T ss_pred CCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccccCCc
Confidence 99999999887665311 1223447999999998855544 334643
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-36 Score=318.73 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=106.2
Q ss_pred CceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCC
Q 012260 64 PHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNI 143 (467)
Q Consensus 64 w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l 143 (467)
|.|| |+... .+.+..+.+...+++.|+|++. ....+++..|.++++|++|++++|.+.+ ..|..+
T Consensus 6 ~~~~-c~~~~--~~l~~ip~~~~~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~ 70 (549)
T 2z81_A 6 ASGV-CDGRS--RSFTSIPSGLTAAMKSLDLSFN----------KITYIGHGDLRACANLQVLILKSSRINT--IEGDAF 70 (549)
T ss_dssp TTSE-EECTT--SCCSSCCSCCCTTCCEEECCSS----------CCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTT
T ss_pred CCce-EECCC--CccccccccCCCCccEEECcCC----------ccCccChhhhhcCCcccEEECCCCCcCc--cChhhc
Confidence 9999 87521 1222223333468999999853 2334444445888888888888887763 334455
Q ss_pred CccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCC-CcccccCCCCCCCEEEccCCcCCCccc-ccccCC
Q 012260 144 PASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYG-GIPDKVGDLVGLEEITLSRNKLSGGFS-FSLDKL 221 (467)
Q Consensus 144 ~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l 221 (467)
+++ ++|++|++++| .+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++
T Consensus 71 -~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 71 -YSL-GSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp -TTC-TTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred -ccc-ccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 777 78888888888 7887777778888888888888888765 345677777777777777776433433 456666
Q ss_pred CCCCEEeccCCcCCCCchhh
Q 012260 222 KKLRILDLSQNQFDGNVPEE 241 (467)
Q Consensus 222 ~~L~~L~L~~n~l~~~~p~~ 241 (467)
++|++|++++|++++..|..
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp CEEEEEEEEETTCCEECTTT
T ss_pred cccCeeeccCCcccccChhh
Confidence 66666666666655444433
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-36 Score=315.94 Aligned_cols=329 Identities=22% Similarity=0.203 Sum_probs=231.3
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
..+++.|+|++ +....+++..|.++++|++|+|++|.+.+ ..|..+ .++ ++|++|++++| .++ .
T Consensus 51 ~~~L~~L~Ls~----------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~-~~l-~~L~~L~Ls~N-~l~-~ 114 (562)
T 3a79_B 51 PPRTKALSLSQ----------NSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVF-LFN-QDLEYLDVSHN-RLQ-N 114 (562)
T ss_dssp CTTCCEEECCS----------SCCCCCCGGGTTTCTTCCEEECCSCCCCE--ECTTTT-TTC-TTCCEEECTTS-CCC-E
T ss_pred CCCcCEEECCC----------CCccccChhhhccCCCccEEECCCCCCCc--CCHHHh-CCC-CCCCEEECCCC-cCC-c
Confidence 35788888874 33445665555777788888887777763 334455 677 77777777777 666 3
Q ss_pred cchhhcCCCCCCEEEeecCCCCCC-cccccCCCCCCCEEEccCCcCCC-------------------------ccccccc
Q 012260 166 LGGIIGSFTNLRRLVLTGNGVYGG-IPDKVGDLVGLEEITLSRNKLSG-------------------------GFSFSLD 219 (467)
Q Consensus 166 ~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~-------------------------~~p~~l~ 219 (467)
+|.. .+++|++|++++|++++. +|..|+++++|++|++++|.+++ ..|..+.
T Consensus 115 lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCccccc
Confidence 5554 677777777777777653 35667777777777777766543 2233332
Q ss_pred CCC-----------------------------------------------------------------------------
Q 012260 220 KLK----------------------------------------------------------------------------- 222 (467)
Q Consensus 220 ~l~----------------------------------------------------------------------------- 222 (467)
.+.
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 222
Q ss_pred ----CCCEEeccCCcCCCCchhhh-----------------------------------------------------hCC
Q 012260 223 ----KLRILDLSQNQFDGNVPEEM-----------------------------------------------------GNL 245 (467)
Q Consensus 223 ----~L~~L~L~~n~l~~~~p~~l-----------------------------------------------------~~l 245 (467)
+|++|++++|.++|.+|..+ ..+
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l 352 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC
Confidence 45555555666655555443 566
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCC-hhHHhhcCcCCcEEeccCccCCCCch-hHhhcCCCCcE
Q 012260 246 TNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFG-VPTFLAEMDKLREVYLSGNFLGGEIP-EIWESLGGIVG 323 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~ 323 (467)
++|++|++++|++++.+|..+.++++|++|++++|+++++. +|..+..+++|++|++++|++++.+| ..+..+++|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 78888888888888778888888888888888888887632 34567788888888888888887444 34777888888
Q ss_pred EeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCC-cccccccCCeeeecC
Q 012260 324 IGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFS-AKFSTKVGEKLKLKG 402 (467)
Q Consensus 324 L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~~~l~l~~ 402 (467)
|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. +.....+ +.+++++
T Consensus 433 L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L-~~L~l~~ 506 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL-QYIWLHD 506 (562)
T ss_dssp EECCSSCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC-CCEECCS
T ss_pred EECCCCCCCcchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC-CEEEecC
Confidence 88888888876665431 68999999999998 67777779999999999999999 78876 4444444 8999999
Q ss_pred CCCCCcCcccccCC-C---CCC--------CCCCcccCCCCCCCcccccccc
Q 012260 403 NPDLCIDEKFSIGK-N---ASG--------SIGQLKLCKKPDNPKAAMFSDA 442 (467)
Q Consensus 403 Np~~C~c~~~~~~~-~---~~~--------~~~~~~~C~~p~~~~g~~~~d~ 442 (467)
|||.|+|+..|+.+ + ... ..+....|+. +|....|.
T Consensus 507 N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~g~~l~~~ 554 (562)
T 3a79_B 507 NPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG----SGKPVRSI 554 (562)
T ss_dssp CCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS----SCCCTTTC
T ss_pred CCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC----CCcEeeee
Confidence 99999999877632 1 111 2234467876 66655555
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-35 Score=314.18 Aligned_cols=306 Identities=18% Similarity=0.164 Sum_probs=251.2
Q ss_pred CCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCC
Q 012260 107 NANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGV 186 (467)
Q Consensus 107 ~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l 186 (467)
+..+.+|+.+|.++++|++|+|++|.+.+ ..|..+ +.+ ++|++|+|++| .+++..|..|+++++|++|+|++|.+
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~l~~--~~~~~~-~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAF-AYA-HTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSCCCE--ECTTTT-TTC-TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCCCCC--CChHHh-cCC-CCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 45678999998999999999999998874 334466 888 99999999999 99998888899999999999999999
Q ss_pred CCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCC------
Q 012260 187 YGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSG------ 260 (467)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------ 260 (467)
++..+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTT
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCch
Confidence 8777777899999999999999999998989999999999999999998653 3445555555555554442
Q ss_pred ------------CccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccC
Q 012260 261 ------------KIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSG 328 (467)
Q Consensus 261 ------------~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (467)
.++..+ .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++
T Consensus 213 L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 213 VEELDASHNSINVVRGPV--NVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred hheeeccCCccccccccc--CCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 122221 2578999999999988 36788999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCc
Q 012260 329 TGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 329 N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~ 408 (467)
|.++ .+|..+. .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +|. .....+ +.+++++|||.|+
T Consensus 288 N~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~~--~~~~~L-~~L~l~~N~~~~~ 360 (597)
T 3oja_B 288 NRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKL--STHHTL-KNLTLSHNDWDCN 360 (597)
T ss_dssp SCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CCC--CTTCCC-SEEECCSSCEEHH
T ss_pred CCCC-CCCcccc-cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cCh--hhcCCC-CEEEeeCCCCCCh
Confidence 9999 5676665 7899999999999999 678888999999999999999984 442 233333 8999999999999
Q ss_pred CcccccCCCCCCCC-CCcccCCCCC
Q 012260 409 DEKFSIGKNASGSI-GQLKLCKKPD 432 (467)
Q Consensus 409 c~~~~~~~~~~~~~-~~~~~C~~p~ 432 (467)
|...++.......+ .....|..+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 361 SLRALFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp HHHHHTTTCCTTTBCCCCCCCCTTC
T ss_pred hHHHHHHHHhhhccccccccCCcch
Confidence 98777665433322 2225676543
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=313.55 Aligned_cols=167 Identities=18% Similarity=0.248 Sum_probs=128.1
Q ss_pred ccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCC-CCCchHHHhccc
Q 012260 266 LGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLV-GKIPASMGIHLK 344 (467)
Q Consensus 266 ~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~~~~~l~ 344 (467)
+..+++|++|++++|.+++...+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+. .++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~-~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh-ccc
Confidence 4455566666666666655222245677888888888888888888888888999999999999987 56887776 899
Q ss_pred CCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccC-CC---CCC
Q 012260 345 KLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIG-KN---ASG 420 (467)
Q Consensus 345 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~-~~---~~~ 420 (467)
+|++|++++|++++..|..+..+++|++|++++|++++..|..+.....+ +.+++++||+.|+|+..++. ++ ...
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~~~~~~~~~~wl~~~~~ 549 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 549 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCCTTTTHHHHHHHHHTGG
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC-cEEEecCCcccCCCcchHHHHHHHHhccc
Confidence 99999999999998889999999999999999999997666555555444 89999999999999965543 22 112
Q ss_pred CCCCcccCCCCCCC
Q 012260 421 SIGQLKLCKKPDNP 434 (467)
Q Consensus 421 ~~~~~~~C~~p~~~ 434 (467)
.+.....|+.|+.+
T Consensus 550 ~~~~~~~C~~~~~~ 563 (570)
T 2z63_A 550 KEQGSAKCSGSGKP 563 (570)
T ss_dssp GEESCCBBTTTCCB
T ss_pred cCCCchhhCCCCCc
Confidence 22233489988553
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-34 Score=306.03 Aligned_cols=322 Identities=18% Similarity=0.175 Sum_probs=240.3
Q ss_pred CCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCC
Q 012260 63 PPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDN 142 (467)
Q Consensus 63 ~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~ 142 (467)
.+..|.|... +....+.+...+++.|+|++ +....+++..|.++++|++|+|++|.+.. ..|..
T Consensus 13 ~~~~~~c~~~----~l~~iP~~l~~~l~~L~Ls~----------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~ 76 (606)
T 3t6q_A 13 VNKTYNCENL----GLNEIPGTLPNSTECLEFSF----------NVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDT 76 (606)
T ss_dssp TTTEEECTTS----CCSSCCTTSCTTCCEEECTT----------CCCSEECTTTSTTCTTCSEEECTTCCCCE--ECTTT
T ss_pred CCceEECCCC----CcccCcCCCCCcCcEEEccC----------CccCcCChhHhccCccceEEECCCCccce--eChhh
Confidence 3567888752 12222233446789999984 33456666666999999999999998874 45666
Q ss_pred CCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCC
Q 012260 143 IPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLK 222 (467)
Q Consensus 143 l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 222 (467)
+ +++ ++|++|++++| .+++..|..|+++++|++|++++|++++..|..++++++|++|++++|.+++..+..+..++
T Consensus 77 ~-~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 153 (606)
T 3t6q_A 77 F-QSQ-HRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153 (606)
T ss_dssp T-TTC-TTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred c-cCc-cccCeeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence 6 888 89999999999 89888888999999999999999999887788889999999999999999875545555688
Q ss_pred CCCEEeccCCcCCCCchhhhhCCCCCC--EEEccCCcCCCCcc-------------------------------------
Q 012260 223 KLRILDLSQNQFDGNVPEEMGNLTNLL--KLDLSSNVCSGKIP------------------------------------- 263 (467)
Q Consensus 223 ~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p------------------------------------- 263 (467)
+|++|++++|.+++..+..++.+++|+ .|++++|.+++..|
T Consensus 154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence 999999999988877777788887777 67777766554332
Q ss_pred --------------------------------------ccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCc
Q 012260 264 --------------------------------------ESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGN 305 (467)
Q Consensus 264 --------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 305 (467)
..|..+++|++|++++|+++. +|..+..+++|++|++++|
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSAN 311 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccC
Confidence 335666778888888887775 5666777788888888888
Q ss_pred cCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCC--chhhhCCCCCCEEEccCCccccc
Q 012260 306 FLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNV--PEEFGVLEFVGEINLENNNLSGR 383 (467)
Q Consensus 306 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~g~ 383 (467)
.+++..|..+..+++|++|++++|.+.+.+|......+++|++|++++|++++.. +..+..+++|++|++++|++++.
T Consensus 312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 8887777777778888888888887777676553336777777777777777554 56677777777777777777766
Q ss_pred CCCCcccccccCCeeeecCCCCC
Q 012260 384 VPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 384 ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
.|..+.....+ +.+++++|...
T Consensus 392 ~~~~~~~l~~L-~~L~l~~n~l~ 413 (606)
T 3t6q_A 392 KTEAFKECPQL-ELLDLAFTRLK 413 (606)
T ss_dssp CTTTTTTCTTC-SEEECTTCCEE
T ss_pred CHHHhcCCccC-CeEECCCCcCC
Confidence 66555444433 67777776643
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-35 Score=299.47 Aligned_cols=286 Identities=20% Similarity=0.186 Sum_probs=252.2
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
..+++.|+|++ +...+.+++..|.++++|++|+|++|.+.+ ..|..+ +++ ++|++|++++| .+++.
T Consensus 53 l~~L~~L~L~~---------n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~-~~l-~~L~~L~L~~n-~l~~~ 118 (455)
T 3v47_A 53 LQDLQFLKVEQ---------QTPGLVIRNNTFRGLSSLIILKLDYNQFLQ--LETGAF-NGL-ANLEVLTLTQC-NLDGA 118 (455)
T ss_dssp CTTCCEEECCC---------CSTTCEECTTTTTTCTTCCEEECTTCTTCE--ECTTTT-TTC-TTCCEEECTTS-CCBTH
T ss_pred CccccEEECcC---------CcccceECcccccccccCCEEeCCCCccCc--cChhhc-cCc-ccCCEEeCCCC-CCCcc
Confidence 35788888874 345668888878999999999999998874 457777 899 99999999999 99987
Q ss_pred cchh--hcCCCCCCEEEeecCCCCCCcccc-cCCCCCCCEEEccCCcCCCcccccccCC---------------------
Q 012260 166 LGGI--IGSFTNLRRLVLTGNGVYGGIPDK-VGDLVGLEEITLSRNKLSGGFSFSLDKL--------------------- 221 (467)
Q Consensus 166 ~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l--------------------- 221 (467)
+|.. ++++++|++|++++|++++..|.. +.++++|++|++++|.+++..+..+..+
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchh
Confidence 7665 999999999999999998888876 8999999999999999998877666543
Q ss_pred -------------CCCCEEeccCCcCCCCchhhhhCC---------------------------------------CCCC
Q 012260 222 -------------KKLRILDLSQNQFDGNVPEEMGNL---------------------------------------TNLL 249 (467)
Q Consensus 222 -------------~~L~~L~L~~n~l~~~~p~~l~~l---------------------------------------~~L~ 249 (467)
++|++|++++|++++..|..+... ++|+
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 679999999999987776655332 5899
Q ss_pred EEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCC
Q 012260 250 KLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGT 329 (467)
Q Consensus 250 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 329 (467)
+|++++|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred EEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 99999999998889999999999999999999998 56778899999999999999999888999999999999999999
Q ss_pred CCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCC
Q 012260 330 GLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFS 387 (467)
Q Consensus 330 ~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~ 387 (467)
++++..|..+. .+++|++|+|++|++++..+..+..+++|++|++++|++++.+|..
T Consensus 358 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 358 HIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99977787777 8999999999999999877778899999999999999999999853
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.7e-36 Score=291.73 Aligned_cols=233 Identities=23% Similarity=0.363 Sum_probs=200.2
Q ss_pred cChhhhhcCCCCceEeccc-ccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCc
Q 012260 112 LNPLIFTSFKHLRKLFFYK-CFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGI 190 (467)
Q Consensus 112 l~~~~f~~l~~L~~L~L~~-~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 190 (467)
+|+.+ .++++|++|++++ |.+.+ .+|..+ +++ ++|++|++++| .+++.+|..|+++++|++|++++|.+++.+
T Consensus 68 ~~~~l-~~l~~L~~L~L~~~n~l~~--~~p~~l-~~l-~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 68 IPSSL-ANLPYLNFLYIGGINNLVG--PIPPAI-AKL-TQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp CCGGG-GGCTTCSEEEEEEETTEES--CCCGGG-GGC-TTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cChhH-hCCCCCCeeeCCCCCcccc--cCChhH-hcC-CCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcC
Confidence 34555 9999999999995 77765 789888 999 99999999999 999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEccCCcCCCcccccccCCC-CCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCC
Q 012260 191 PDKVGDLVGLEEITLSRNKLSGGFSFSLDKLK-KLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHL 269 (467)
Q Consensus 191 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 269 (467)
|..++.+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|++++..|..+..+
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC
Confidence 99999999999999999999999999999998 999999999999999999999998 9999999999998899999999
Q ss_pred CCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEE
Q 012260 270 KSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYL 349 (467)
Q Consensus 270 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 349 (467)
++|++|++++|++++ .+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. . .+++|+.|
T Consensus 221 ~~L~~L~L~~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~-~l~~L~~l 296 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G-NLQRFDVS 296 (313)
T ss_dssp SCCSEEECCSSEECC-BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T-TGGGSCGG
T ss_pred CCCCEEECCCCceee-ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c-cccccChH
Confidence 999999999998887 4444 566777777777777777777777777777777777777776666654 3 56666666
Q ss_pred eccCCC
Q 012260 350 SLDNNK 355 (467)
Q Consensus 350 ~Ls~N~ 355 (467)
++++|+
T Consensus 297 ~l~~N~ 302 (313)
T 1ogq_A 297 AYANNK 302 (313)
T ss_dssp GTCSSS
T ss_pred HhcCCC
Confidence 666665
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.7e-35 Score=310.85 Aligned_cols=297 Identities=19% Similarity=0.274 Sum_probs=247.0
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcc-----------------cChhhhh--cCCCCceEecccccCCCCcCCCCCCCcc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANST-----------------LNPLIFT--SFKHLRKLFFYKCFTEKQVPVPDNIPAS 146 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~-----------------l~~~~f~--~l~~L~~L~L~~~~~~~~~~ip~~l~~~ 146 (467)
..+++.|+|++. .+.|. +|+.+ + ++++|++|+|++|.+.+ .+|..+ ++
T Consensus 205 l~~L~~L~Ls~n---------~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~--~~p~~l-~~ 271 (636)
T 4eco_A 205 LTKLRQFYMGNS---------PFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLT--KLPTFL-KA 271 (636)
T ss_dssp CTTCCEEEEESC---------CCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCS--SCCTTT-TT
T ss_pred ccCCCEEECcCC---------ccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCc--cChHHH-hc
Confidence 357888888853 34554 88887 7 99999999999998876 899999 99
Q ss_pred ccCCccEEEcccCCC-ccc-ccchhhcCC------CCCCEEEeecCCCCCCccc--ccCCCCCCCEEEccCCcCCCcccc
Q 012260 147 FGSSLEELVFIDNPS-FVG-PLGGIIGSF------TNLRRLVLTGNGVYGGIPD--KVGDLVGLEEITLSRNKLSGGFSF 216 (467)
Q Consensus 147 l~~~L~~L~L~~n~~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~ 216 (467)
+ ++|++|++++| . ++| .+|..++++ ++|++|++++|+++ .+|. .++++++|++|++++|+++|.+|
T Consensus 272 l-~~L~~L~Ls~n-~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 272 L-PEMQLINVACN-RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp C-SSCCEEECTTC-TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred C-CCCCEEECcCC-CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 9 99999999999 7 999 899999887 99999999999997 8888 89999999999999999998888
Q ss_pred cccCCCCCCEEeccCCcCCCCchhhhhCCCC-CCEEEccCCcCCCCccccccCCC--CCCeeeccccCCCCCChhHHhh-
Q 012260 217 SLDKLKKLRILDLSQNQFDGNVPEEMGNLTN-LLKLDLSSNVCSGKIPESLGHLK--SLEFMDLSFNGFGNFGVPTFLA- 292 (467)
Q Consensus 217 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~~p~~~~- 292 (467)
.+.++++|++|++++|+++ .+|..+.++++ |++|++++|+++ .+|..+..++ +|++|++++|++++ ..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~ 424 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDP 424 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT-TTTCSSCT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC-cchhhhcc
Confidence 8899999999999999998 78888999998 999999999988 7788777655 88999999999888 6777666
Q ss_pred ------cCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhccc-------CCCEEeccCCCCCCC
Q 012260 293 ------EMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLK-------KLSYLSLDNNKLQGN 359 (467)
Q Consensus 293 ------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-------~L~~L~Ls~N~l~~~ 359 (467)
.+++|++|++++|+++...+..+..+++|++|++++|+++ .+|...+.... +|++|+|++|+++ .
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 6778888899888888655555667888888888888888 77776552222 7888888888888 6
Q ss_pred Cchhhh--CCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 360 VPEEFG--VLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 360 ~p~~~~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
+|..+. .+++|+.|+|++|++++ +|..+.....+ +.+++++|+..
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L-~~L~Ls~N~~l 549 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL-KGFGIRNQRDA 549 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC-CEEECCSCBCT
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC-CEEECCCCccc
Confidence 777776 78888888888888886 78777655444 78888766533
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=296.48 Aligned_cols=307 Identities=19% Similarity=0.164 Sum_probs=269.0
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
..+++.|+|++ +....+++..|.++++|++|+|++|.+. .+|...+.++ ++|++|++++| .+.+.
T Consensus 55 l~~L~~L~L~~----------n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l-~~L~~L~Ls~n-~i~~~ 119 (477)
T 2id5_A 55 FPHLEELELNE----------NIVSAVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGL-SNLTKLDISEN-KIVIL 119 (477)
T ss_dssp CTTCCEEECTT----------SCCCEECTTTTTTCTTCCEEECCSSCCC---SCCTTSSTTC-TTCCEEECTTS-CCCEE
T ss_pred CCCCCEEECCC----------CccCEeChhhhhCCccCCEEECCCCcCC---ccCcccccCC-CCCCEEECCCC-ccccC
Confidence 35788889884 3345565666699999999999999887 6777655888 99999999999 99998
Q ss_pred cchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCC
Q 012260 166 LGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNL 245 (467)
Q Consensus 166 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 245 (467)
.|..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+.++++|+.|++++|.+.+..+..+..+
T Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l 199 (477)
T 2id5_A 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199 (477)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSC
T ss_pred ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccC
Confidence 89999999999999999999998889999999999999999999998887889999999999999999998888889999
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEe
Q 012260 246 TNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIG 325 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 325 (467)
++|++|++++|...+.+|.......+|++|++++|+++. ..+..+..+++|+.|+|++|.+++..+..+..+++|++|+
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence 999999999999888888877777899999999999998 3446789999999999999999988888899999999999
Q ss_pred ccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCC
Q 012260 326 LSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 326 Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~ 405 (467)
|++|++++..|..+. .+++|++|+|++|++++..+..|..+++|+.|++++|.+++..+.. +.......+.+.++..
T Consensus 279 L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~--~~~~~~~~~~~~~~~~ 355 (477)
T 2id5_A 279 LVGGQLAVVEPYAFR-GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL--WVFRRRWRLNFNRQQP 355 (477)
T ss_dssp CCSSCCSEECTTTBT-TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH--HHHTTTTSSCCTTCCC
T ss_pred CCCCccceECHHHhc-CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH--hHHhhhhccccCccCc
Confidence 999999977777776 8999999999999999888888899999999999999998665432 2222224567788899
Q ss_pred CCcCcc
Q 012260 406 LCIDEK 411 (467)
Q Consensus 406 ~C~c~~ 411 (467)
.|.++.
T Consensus 356 ~C~~p~ 361 (477)
T 2id5_A 356 TCATPE 361 (477)
T ss_dssp BEEESG
T ss_pred eeCCch
Confidence 998864
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.9e-35 Score=284.53 Aligned_cols=285 Identities=18% Similarity=0.173 Sum_probs=178.7
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCC----CCC---CCCCCCCCCCCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCC
Q 012260 28 PFLSSLEQDSVYQVLDSVN-PTI----HWR---SLFPDDLCSSPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSD 99 (467)
Q Consensus 28 ~~~~~~~~~all~~~~~~~-~~~----~W~---~~~~~~C~~~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~ 99 (467)
...-.+|++||++||+++. +.. .|. ....+.|+ |.|+.|+. . ... +.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~---~~g~~~~~-~------------~~~-----l~---- 76 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET---RTGRALKA-T------------ADL-----LE---- 76 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC---SHHHHHHH-H------------HHH-----HH----
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc---cCCcchhh-h------------HHH-----Hh----
Confidence 3455789999999999884 332 463 22234454 99999964 0 000 00
Q ss_pred CCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEE
Q 012260 100 YSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRL 179 (467)
Q Consensus 100 ~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L 179 (467)
....+++++|+|++|.+. .+|..+ +.+ ++|++|++++| .++ .+|..++++++|++|
T Consensus 77 -----------------~~~~~~l~~L~L~~n~l~---~lp~~l-~~l-~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 77 -----------------DATQPGRVALELRSVPLP---QFPDQA-FRL-SHLQHMTIDAA-GLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp -----------------HHTSTTCCEEEEESSCCS---SCCSCG-GGG-TTCSEEEEESS-CCC-CCCSCGGGGTTCSEE
T ss_pred -----------------cccccceeEEEccCCCch---hcChhh-hhC-CCCCEEECCCC-Ccc-chhHHHhccCCCCEE
Confidence 023455666666666665 566666 666 67777777777 666 566667777777777
Q ss_pred EeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCC
Q 012260 180 VLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCS 259 (467)
Q Consensus 180 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 259 (467)
++++|.++ .+|..++++++|++|++++|++.+.+|..+... ..+..+.++++|++|++++|+++
T Consensus 133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC
T ss_pred ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC
Confidence 77777765 556666677777777777766666666554330 01112344555555555555555
Q ss_pred CCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHH
Q 012260 260 GKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASM 339 (467)
Q Consensus 260 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 339 (467)
.+|..++++++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+
T Consensus 197 -~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 197 -SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred -cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence 555555556666666666666654 34455666666666666666666666666666777777777776666777666
Q ss_pred HhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 340 GIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 340 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
. .+++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 274 ~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 274 H-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp G-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred h-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 5 6777777777777777777777777777777777666554
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=9e-34 Score=289.74 Aligned_cols=282 Identities=21% Similarity=0.192 Sum_probs=200.5
Q ss_pred ceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEE
Q 012260 124 RKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEI 203 (467)
Q Consensus 124 ~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 203 (467)
+.++.++..+. .+|..+| ++|++|+|++| .+++..|..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 57 ~~v~c~~~~l~---~iP~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 57 SKVVCTRRGLS---EVPQGIP----SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp CEEECCSSCCS---SCCSCCC----TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cEEEECCCCcC---ccCCCCC----CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 44555555444 6777664 78889999998 8888888888888889999999888887777888888888888
Q ss_pred EccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcc-ccccCCCCCCeeeccccCC
Q 012260 204 TLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIP-ESLGHLKSLEFMDLSFNGF 282 (467)
Q Consensus 204 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l 282 (467)
+|++|++++..+..|.++++|++|++++|+++...+..|.++++|++|++++|...+.++ ..|.++++|++|++++|++
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 888888887777778888888888888888886656677778888888887743333333 3456666666666666665
Q ss_pred CCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCch
Q 012260 283 GNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPE 362 (467)
Q Consensus 283 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~ 362 (467)
++ +| .+..+++|++|+|++|.+++..|..+. .+++|++|+|++|++++..|.
T Consensus 209 ~~--~~-------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 209 KD--MP-------------------------NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp SS--CC-------------------------CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTT
T ss_pred cc--cc-------------------------cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHH
Confidence 54 12 134455666666666666655555555 677777888888888777777
Q ss_pred hhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCC----CCCCCCcccCCCCCCCcccc
Q 012260 363 EFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNA----SGSIGQLKLCKKPDNPKAAM 438 (467)
Q Consensus 363 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~----~~~~~~~~~C~~p~~~~g~~ 438 (467)
.|..+++|+.|+|++|++++..+..+..... ++.+++++|||.|+|++.|+..+. .........|++|...+|..
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~ 339 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRY-LVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRY 339 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTT-CCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCB
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccC-CCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccch
Confidence 7888888888888888888433333333333 489999999999999988865432 12222346899999998855
Q ss_pred cccc
Q 012260 439 FSDA 442 (467)
Q Consensus 439 ~~d~ 442 (467)
..+.
T Consensus 340 l~~~ 343 (452)
T 3zyi_A 340 LVEV 343 (452)
T ss_dssp TTSC
T ss_pred hhcc
Confidence 5443
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=283.81 Aligned_cols=306 Identities=18% Similarity=0.129 Sum_probs=243.8
Q ss_pred cCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCC
Q 012260 119 SFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLV 198 (467)
Q Consensus 119 ~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 198 (467)
.++.....+.+++.+. .+|..++ ++|++|++++| .+++..+..|.++++|++|++++|++++..|..|++++
T Consensus 29 ~C~~~~~c~~~~~~l~---~iP~~~~----~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN---SIPSGLT----EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp EECTTSEEECCSTTCS---SCCTTCC----TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCeEeeCCCCCcc---ccccccc----ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 3444455677777776 7887774 68999999999 88876666899999999999999999888788899999
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCch-hhhhCCCCCCEEEccCCc-CCCCccccccCCCCCCeee
Q 012260 199 GLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVP-EEMGNLTNLLKLDLSSNV-CSGKIPESLGHLKSLEFMD 276 (467)
Q Consensus 199 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 276 (467)
+|++|++++|++++..+..+.++++|++|++++|++++..+ ..+.++++|++|++++|. +.+..+..+.++++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 99999999999997666668899999999999999985433 378889999999999984 6655567889999999999
Q ss_pred ccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHH--hcccCCCEEeccCC
Q 012260 277 LSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMG--IHLKKLSYLSLDNN 354 (467)
Q Consensus 277 Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~--~~l~~L~~L~Ls~N 354 (467)
+++|++++ ..|..+..+++|++|++++|+++...+..+..+++|++|++++|.+++..+..+. ...+.++.++|+++
T Consensus 181 l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 181 IDASDLQS-YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEETTCCE-ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred CCCCCcCc-cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 99999988 5678888999999999999998755555566789999999999999865443332 14667899999999
Q ss_pred CCCC----CCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCc-ccccCC---CCCCCCCCcc
Q 012260 355 KLQG----NVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE-KFSIGK---NASGSIGQLK 426 (467)
Q Consensus 355 ~l~~----~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~-~~~~~~---~~~~~~~~~~ 426 (467)
.+++ .+|..+..+++|++|++++|+++ .+|..+......++.+++++||+.|+|+ +.|+.. .....+....
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~ 338 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 338 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCCCc
Confidence 9886 37888999999999999999999 7887753333344899999999999997 444333 2233345567
Q ss_pred cCCCCCCC
Q 012260 427 LCKKPDNP 434 (467)
Q Consensus 427 ~C~~p~~~ 434 (467)
.|+.|+.+
T Consensus 339 ~C~~p~~~ 346 (353)
T 2z80_A 339 KCSGSGKP 346 (353)
T ss_dssp BBTTTCCB
T ss_pred ccCCCCCc
Confidence 99998553
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=288.31 Aligned_cols=270 Identities=22% Similarity=0.212 Sum_probs=196.3
Q ss_pred CCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCccccc
Q 012260 138 PVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFS 217 (467)
Q Consensus 138 ~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 217 (467)
.+|..+| +++++|+|++| .+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+..
T Consensus 57 ~iP~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 57 EVPDGIS----TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp SCCSCCC----TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred cCCCCCC----CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 6777764 77899999999 888877888888999999999999988777788888888999988888888776677
Q ss_pred ccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcc-ccccCCCCCCeeeccccCCCCCChhHHhhcCcC
Q 012260 218 LDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIP-ESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDK 296 (467)
Q Consensus 218 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 296 (467)
|..+++|++|++++|+++...+..|.++++|++|++++|...+.++ ..|.++++|++|++++|+++. +|.
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~------- 202 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN------- 202 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CCC-------
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--ccc-------
Confidence 8888888888888888886666677888888888888744333333 356666666666666666654 221
Q ss_pred CcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEcc
Q 012260 297 LREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLE 376 (467)
Q Consensus 297 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 376 (467)
+..+++|++|+|++|++++..|..+. .+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 203 ------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 203 ------------------LTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp ------------------CTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ------------------cCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 33445556666666666544444444 67777777777777777777778888888888888
Q ss_pred CCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCC----CCCCCCcccCCCCCCCccccccc
Q 012260 377 NNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNA----SGSIGQLKLCKKPDNPKAAMFSD 441 (467)
Q Consensus 377 ~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~----~~~~~~~~~C~~p~~~~g~~~~d 441 (467)
+|++++..+..+..... ++.+++++|||.|+|++.|+..+. .........|++|+..+|....+
T Consensus 264 ~N~l~~~~~~~~~~l~~-L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~ 331 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHH-LERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGE 331 (440)
T ss_dssp TSCCCCCCTTTTSSCTT-CCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC-
T ss_pred CCCCCccChhHhccccC-CCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhH
Confidence 88888433333333333 489999999999999988875432 22223346899999999955443
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=308.30 Aligned_cols=302 Identities=21% Similarity=0.225 Sum_probs=209.9
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCC-CCCCCccccCCccEEEcccCCCccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPV-PDNIPASFGSSLEELVFIDNPSFVG 164 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~i-p~~l~~~l~~~L~~L~L~~n~~l~~ 164 (467)
..+++.|+|++ +....+++..|.++++|++|+|++|...+ .+ |..+ .++ ++|++|+|++| .+.+
T Consensus 23 p~~l~~LdLs~----------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~--~i~~~~f-~~L-~~L~~L~Ls~N-~l~~ 87 (844)
T 3j0a_A 23 LNTTERLLLSF----------NYIRTVTASSFPFLEQLQLLELGSQYTPL--TIDKEAF-RNL-PNLRILDLGSS-KIYF 87 (844)
T ss_dssp CTTCCEEEEES----------CCCCEECSSSCSSCCSCSEEEECTTCCCC--EECTTTT-SSC-TTCCEEECTTC-CCCE
T ss_pred CCCcCEEECCC----------CcCCccChhHCcccccCeEEeCCCCCCcc--ccCHHHh-cCC-CCCCEEECCCC-cCcc
Confidence 46899999984 33445555556899999999999885543 66 4555 888 89999999999 8888
Q ss_pred ccchhhcCCCCCCEEEeecCCCCCCcccc--cCCCCCCCEEEccCCcCCCccc-ccccCCCCCCEEeccCCcCCCCchhh
Q 012260 165 PLGGIIGSFTNLRRLVLTGNGVYGGIPDK--VGDLVGLEEITLSRNKLSGGFS-FSLDKLKKLRILDLSQNQFDGNVPEE 241 (467)
Q Consensus 165 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~ 241 (467)
..|..|+++++|++|+|++|.+++.+|.. ++++++|++|++++|.+++..+ ..|.++++|++|++++|.+++..+..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 88889999999999999999998866654 8899999999999999987655 57889999999999999998888877
Q ss_pred hhCC--CCCCEEEccCCcCCCCccccccCCCC------CCeeeccccCCCCCChhHHhhc--------------------
Q 012260 242 MGNL--TNLLKLDLSSNVCSGKIPESLGHLKS------LEFMDLSFNGFGNFGVPTFLAE-------------------- 293 (467)
Q Consensus 242 l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L~~L~Ls~n~l~~~~~p~~~~~-------------------- 293 (467)
+..+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+++ ..+..+..
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-DITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST-TTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch-hHHHHHHhhcCcccccceeccccccccc
Confidence 7766 77888888887777776666655554 7777777776554 22222211
Q ss_pred ------------------CcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCC
Q 012260 294 ------------------MDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNK 355 (467)
Q Consensus 294 ------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 355 (467)
.++|+.|++++|.+.+..+..+..+++|+.|+|++|++++..|..+. .+++|++|+|++|+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNL 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCC
Confidence 14566666666666655566666666666666666666644444444 56666666666666
Q ss_pred CCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCC
Q 012260 356 LQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 356 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~ 405 (467)
+++..|..+..+++|+.|++++|++++..+..+.....+ +.|++++|..
T Consensus 326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l 374 (844)
T 3j0a_A 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-QTLDLRDNAL 374 (844)
T ss_dssp CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-CEEEEETCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-CEEECCCCCC
Confidence 665556666666666666666666653333333222222 5555555543
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=8.3e-34 Score=274.85 Aligned_cols=286 Identities=18% Similarity=0.179 Sum_probs=181.0
Q ss_pred ceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC--cccccCCCCCCC
Q 012260 124 RKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG--IPDKVGDLVGLE 201 (467)
Q Consensus 124 ~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~ 201 (467)
+.++.+++.+. .+|..+| ++|++|++++| .++...+..|.++++|++|++++|+++.. .+..+..+++|+
T Consensus 10 ~~l~c~~~~l~---~ip~~~~----~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLT---SVPTGIP----SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCS---SCCSCCC----TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcc---cCCCCCC----CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence 35555555554 5665553 55666666666 55543333355566666666666655422 133344445555
Q ss_pred EEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcc-ccccCCCCCCeeecccc
Q 012260 202 EITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIP-ESLGHLKSLEFMDLSFN 280 (467)
Q Consensus 202 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n 280 (467)
+|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 82 ~L~Ls~n~i~-------------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 82 YLDLSFNGVI-------------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp EEECCSCSEE-------------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCccc-------------------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 5555555544 233334444555555555554443322 34555555555555555
Q ss_pred CCCCCChhHHhhcCcCCcEEeccCccCCC-CchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCC
Q 012260 281 GFGNFGVPTFLAEMDKLREVYLSGNFLGG-EIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 281 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
.+++ ..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+. .+++|++|+|++|++++.
T Consensus 137 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 137 HTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp CCEE-CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBC
T ss_pred cCCc-cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCcc
Confidence 5554 344555566666666666666664 4566677777788888888887755566665 788888888988888877
Q ss_pred CchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCC----C-CCCCCcccCCCCCCC
Q 012260 360 VPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNA----S-GSIGQLKLCKKPDNP 434 (467)
Q Consensus 360 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~----~-~~~~~~~~C~~p~~~ 434 (467)
.+..+..+++|++|++++|++++..|..+......++.+++++|++.|+|+..|+.++. . ........|+.|+..
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 77788888999999999999998888776655434489999999999999976654421 1 112334799999999
Q ss_pred cccccccccc
Q 012260 435 KAAMFSDATA 444 (467)
Q Consensus 435 ~g~~~~d~~~ 444 (467)
+|....++..
T Consensus 295 ~g~~~~~~~~ 304 (306)
T 2z66_A 295 QGMPVLSLNI 304 (306)
T ss_dssp TTCBGGGCCC
T ss_pred CCceeeeecC
Confidence 9976666543
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-33 Score=301.87 Aligned_cols=301 Identities=20% Similarity=0.260 Sum_probs=249.1
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCc-----------------ccChhh-hhcCCCCceEecccccCCCCcCCCCCCCccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANS-----------------TLNPLI-FTSFKHLRKLFFYKCFTEKQVPVPDNIPASF 147 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g-----------------~l~~~~-f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l 147 (467)
..+++.|+|++. .+.| .+|+.+ |.++++|++|+|++|.+.+ .+|..+ +++
T Consensus 447 L~~L~~L~Ls~N---------~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~l-~~L 514 (876)
T 4ecn_A 447 LTKLQIIYFANS---------PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLPDFL-YDL 514 (876)
T ss_dssp CTTCCEEEEESC---------CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCCGGG-GGC
T ss_pred CCCCCEEECcCC---------cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--cChHHH-hCC
Confidence 357888899853 3445 488887 3499999999999998776 899888 999
Q ss_pred cCCccEEEcccCCC-ccc-ccchhhcCCC-------CCCEEEeecCCCCCCccc--ccCCCCCCCEEEccCCcCCCcccc
Q 012260 148 GSSLEELVFIDNPS-FVG-PLGGIIGSFT-------NLRRLVLTGNGVYGGIPD--KVGDLVGLEEITLSRNKLSGGFSF 216 (467)
Q Consensus 148 ~~~L~~L~L~~n~~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~ 216 (467)
++|++|++++| . ++| .+|..+++++ +|++|++++|+++ .+|. .++++++|++|++++|.++ .+|
T Consensus 515 -~~L~~L~Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 515 -PELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp -SSCCEEECTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred -CCCCEEECcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 99999999999 7 998 8998887766 9999999999997 8888 8999999999999999999 778
Q ss_pred cccCCCCCCEEeccCCcCCCCchhhhhCCCC-CCEEEccCCcCCCCccccccCCCC--CCeeeccccCCCCCChhHH---
Q 012260 217 SLDKLKKLRILDLSQNQFDGNVPEEMGNLTN-LLKLDLSSNVCSGKIPESLGHLKS--LEFMDLSFNGFGNFGVPTF--- 290 (467)
Q Consensus 217 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~Ls~n~l~~~~~p~~--- 290 (467)
.+.++++|+.|++++|+++ .+|..+.++++ |++|++++|+++ .+|..+..++. |+.|++++|++++ .+|..
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l~~~ 666 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCS 666 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT-TSSSCSSC
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC-ccccchhh
Confidence 8999999999999999999 88988999999 999999999998 78888877654 9999999999987 44432
Q ss_pred hh--cCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcc-------cCCCEEeccCCCCCCCCc
Q 012260 291 LA--EMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHL-------KKLSYLSLDNNKLQGNVP 361 (467)
Q Consensus 291 ~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l-------~~L~~L~Ls~N~l~~~~p 361 (467)
+. .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|..++... ++|++|+|++|+++ .+|
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 22 3448899999999998554445567889999999999998 8887765222 28999999999998 677
Q ss_pred hhhh--CCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCc
Q 012260 362 EEFG--VLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 362 ~~~~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
..+. .+++|+.|+|++|++++ +|..+.....+ +.|++++|+...++.
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRHQRDAEGNR 793 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEECCCCBCTTCCB
T ss_pred HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEECCCCCCccccc
Confidence 7776 88899999999999986 78777665554 888888877444433
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-32 Score=293.19 Aligned_cols=270 Identities=22% Similarity=0.149 Sum_probs=186.8
Q ss_pred CceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCC
Q 012260 64 PHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNI 143 (467)
Q Consensus 64 w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l 143 (467)
++.|.|... +....+.....+++.|+|++ +....+++..|.++++|++|+|++|.+.+ ..|..+
T Consensus 6 ~~~~~cs~~----~L~~ip~~~~~~l~~L~Ls~----------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~ 69 (680)
T 1ziw_A 6 HEVADCSHL----KLTQVPDDLPTNITVLNLTH----------NQLRRLPAANFTRYSQLTSLDVGFNTISK--LEPELC 69 (680)
T ss_dssp SSEEECCSS----CCSSCCSCSCTTCSEEECCS----------SCCCCCCGGGGGGGTTCSEEECCSSCCCC--CCTTHH
T ss_pred CCeeECCCC----CccccccccCCCCcEEECCC----------CCCCCcCHHHHhCCCcCcEEECCCCccCc--cCHHHH
Confidence 666788651 12222223346899999984 33445676666888888888888887764 345545
Q ss_pred CccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCC
Q 012260 144 PASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKK 223 (467)
Q Consensus 144 ~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 223 (467)
+++ ++|++|++++| .+++..+..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..|..+.++++
T Consensus 70 -~~l-~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 70 -QKL-PMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp -HHC-TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred -hcc-cCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 777 88888888888 787655557888888888888888887777778888888888888888888887888888888
Q ss_pred CCEEeccCCcCCCCchhhhh--CCCCCCEEEccCCcCCCCccccccCC---------------------------CCCCe
Q 012260 224 LRILDLSQNQFDGNVPEEMG--NLTNLLKLDLSSNVCSGKIPESLGHL---------------------------KSLEF 274 (467)
Q Consensus 224 L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l---------------------------~~L~~ 274 (467)
|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+ ++|++
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence 88888888888877766554 45788888888888877666655443 34455
Q ss_pred eeccccCCCCCChhHHhhcCcC--CcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEecc
Q 012260 275 MDLSFNGFGNFGVPTFLAEMDK--LREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLD 352 (467)
Q Consensus 275 L~Ls~n~l~~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls 352 (467)
|++++|.+++ ..|..+..++. |+.|++++|++++..|..+..+++|++|++++|++++..|..+. .+++|++|+++
T Consensus 227 L~L~~n~l~~-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~ 304 (680)
T 1ziw_A 227 LSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLK 304 (680)
T ss_dssp EECTTSCCCE-ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECT
T ss_pred EEccCCcccc-cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEecc
Confidence 5555665555 34445555443 66666666666666666666666666666666666654444443 44445555544
Q ss_pred CC
Q 012260 353 NN 354 (467)
Q Consensus 353 ~N 354 (467)
+|
T Consensus 305 ~~ 306 (680)
T 1ziw_A 305 RS 306 (680)
T ss_dssp TC
T ss_pred ch
Confidence 44
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6e-32 Score=264.66 Aligned_cols=269 Identities=23% Similarity=0.281 Sum_probs=186.2
Q ss_pred CCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCC
Q 012260 122 HLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLE 201 (467)
Q Consensus 122 ~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 201 (467)
+++.++++++.+. .+|..+| ++|++|++++| .+++..+..|+++++|++|++++|++++..|..|+++++|+
T Consensus 32 ~l~~l~~~~~~l~---~lp~~~~----~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLE---KVPKDLP----PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCC---SCCCSCC----TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCCcc---ccCccCC----CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 5666666666555 5666553 66777777777 77776666777777777777777777776677777777777
Q ss_pred EEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCC--CccccccCCCCCCeeeccc
Q 012260 202 EITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSG--KIPESLGHLKSLEFMDLSF 279 (467)
Q Consensus 202 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~ 279 (467)
+|++++|.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 7777777777 3444433 677777777777776666677777777777777777753 5566677777777777777
Q ss_pred cCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCC
Q 012260 280 NGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 280 n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
|+++. +|..+ .++|++|++++|++++..|..+..+++|++|++++|.+++..+..+. .+++|++|+|++|+++ .
T Consensus 181 n~l~~--l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 181 TNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp SCCCS--CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-S
T ss_pred Ccccc--CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-c
Confidence 77766 34332 26777778887777777677777777788888888777755454555 6777888888888777 6
Q ss_pred CchhhhCCCCCCEEEccCCcccccCCCCcccc-----cccCCeeeecCCCCCC
Q 012260 360 VPEEFGVLEFVGEINLENNNLSGRVPFSAKFS-----TKVGEKLKLKGNPDLC 407 (467)
Q Consensus 360 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~-----~~~~~~l~l~~Np~~C 407 (467)
+|..+..+++|++|++++|++++..+..+... ....+.+++++||+.+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 67677777778888888887773332222111 1122567777777654
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.6e-32 Score=266.53 Aligned_cols=270 Identities=21% Similarity=0.205 Sum_probs=232.3
Q ss_pred CCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCC
Q 012260 121 KHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGL 200 (467)
Q Consensus 121 ~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 200 (467)
.+++.++++++.+. .+|..++ ++|++|++++| .+++..|..|.++++|++|++++|++++..|..|+++++|
T Consensus 33 c~l~~l~~~~~~l~---~ip~~~~----~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK---AVPKEIS----PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCS---SCCSCCC----TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred ccCCEEECCCCCcc---ccCCCCC----CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 37899999998876 7888774 78999999999 8998778899999999999999999988889999999999
Q ss_pred CEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCC--CCccccccCCCCCCeeecc
Q 012260 201 EEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCS--GKIPESLGHLKSLEFMDLS 278 (467)
Q Consensus 201 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls 278 (467)
++|++++|.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++ +..+..+..+ +|++|+++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 99999999998 4555544 89999999999999777777999999999999999996 3677888888 99999999
Q ss_pred ccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCC
Q 012260 279 FNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQG 358 (467)
Q Consensus 279 ~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 358 (467)
+|++++ +|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+. .+++|++|+|++|+++
T Consensus 181 ~n~l~~--l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 181 EAKLTG--IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS- 254 (332)
T ss_dssp SSBCSS--CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-
T ss_pred CCCCCc--cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-
Confidence 999988 45443 37899999999999988888999999999999999999976666666 8999999999999999
Q ss_pred CCchhhhCCCCCCEEEccCCcccccCCCCcccc-----cccCCeeeecCCCCCCc
Q 012260 359 NVPEEFGVLEFVGEINLENNNLSGRVPFSAKFS-----TKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 359 ~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~-----~~~~~~l~l~~Np~~C~ 408 (467)
.+|..+..+++|+.|++++|++++..+..+... ...++.+++++||+.+.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence 788889999999999999999995444333221 12237899999998753
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-31 Score=262.72 Aligned_cols=269 Identities=18% Similarity=0.219 Sum_probs=227.0
Q ss_pred CCCceEecccccCCCCcCCCC-CCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCC
Q 012260 121 KHLRKLFFYKCFTEKQVPVPD-NIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVG 199 (467)
Q Consensus 121 ~~L~~L~L~~~~~~~~~~ip~-~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 199 (467)
++|++|++++|.+. .+|. .+ +++ ++|++|++++| .+++..|..|+++++|++|++++|+++ .+|..+. ++
T Consensus 52 ~~l~~L~L~~n~i~---~~~~~~~-~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKIT---EIKDGDF-KNL-KNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KT 122 (330)
T ss_dssp TTCCEEECCSSCCC---CBCTTTT-TTC-TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TT
T ss_pred CCCeEEECCCCcCC---EeChhhh-ccC-CCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--cc
Confidence 67899999999887 4655 55 888 99999999999 999988999999999999999999996 5565554 79
Q ss_pred CCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCC--CchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 200 LEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDG--NVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 200 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
|++|++++|.+++..+..+.++++|+.|++++|.++. ..+..+.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l 199 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHL 199 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEEC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEEC
Confidence 9999999999998888889999999999999999964 67788999999999999999998 4666554 89999999
Q ss_pred cccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCC
Q 012260 278 SFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 278 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
++|++++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++
T Consensus 200 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 200 DGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNIS 276 (330)
T ss_dssp TTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCC
T ss_pred CCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCC
Confidence 9999998 56778899999999999999999888888999999999999999999 8998887 8999999999999999
Q ss_pred CCCchhhhC------CCCCCEEEccCCcccc-cCCCCcccccccCCeeeecCCC
Q 012260 358 GNVPEEFGV------LEFVGEINLENNNLSG-RVPFSAKFSTKVGEKLKLKGNP 404 (467)
Q Consensus 358 ~~~p~~~~~------l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~l~l~~Np 404 (467)
+..+..|.. .+.++.|++++|.+.. .++...+......+.+++++|.
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777766653 3689999999999863 3443333333334788998884
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.1e-32 Score=265.40 Aligned_cols=274 Identities=19% Similarity=0.224 Sum_probs=228.5
Q ss_pred ccChhhhhcCCCCceEecccccCCCCcCCC-CCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC
Q 012260 111 TLNPLIFTSFKHLRKLFFYKCFTEKQVPVP-DNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 111 ~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip-~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
.+|..+ .++|++|++++|.+. .++ ..+ .++ ++|++|++++| .+++..|..|+++++|++|++++|+++ .
T Consensus 47 ~ip~~~---~~~l~~L~l~~n~i~---~~~~~~~-~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~ 116 (332)
T 2ft3_A 47 AVPKEI---SPDTTLLDLQNNDIS---ELRKDDF-KGL-QHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLV-E 116 (332)
T ss_dssp SCCSCC---CTTCCEEECCSSCCC---EECTTTT-TTC-TTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCC-S
T ss_pred ccCCCC---CCCCeEEECCCCcCC---ccCHhHh-hCC-CCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCC-c
Confidence 445443 368999999999887 454 456 888 99999999999 999988999999999999999999996 5
Q ss_pred cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCC--CCchhhhhCCCCCCEEEccCCcCCCCcccccc
Q 012260 190 IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFD--GNVPEEMGNLTNLLKLDLSSNVCSGKIPESLG 267 (467)
Q Consensus 190 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 267 (467)
+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|++++ +|..+.
T Consensus 117 l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~ 192 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP 192 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC
T ss_pred cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc
Confidence 565554 89999999999999877778999999999999999996 3667778888 99999999999985 666554
Q ss_pred CCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCC
Q 012260 268 HLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLS 347 (467)
Q Consensus 268 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 347 (467)
++|++|++++|.+++ ..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+. .+++|+
T Consensus 193 --~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~ 267 (332)
T 2ft3_A 193 --ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQ 267 (332)
T ss_dssp --SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCC
T ss_pred --CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCC
Confidence 799999999999998 55677889999999999999999988889999999999999999999 8998887 899999
Q ss_pred EEeccCCCCCCCCchhhhC------CCCCCEEEccCCccc--ccCCCCcccccccCCeeeecCCC
Q 012260 348 YLSLDNNKLQGNVPEEFGV------LEFVGEINLENNNLS--GRVPFSAKFSTKVGEKLKLKGNP 404 (467)
Q Consensus 348 ~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--g~ip~~~~~~~~~~~~l~l~~Np 404 (467)
+|++++|++++..+..+.. .+.|+.|++++|.+. +..|..+..... ++.+++++|.
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~-L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD-RLAIQFGNYK 331 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC-STTEEC----
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch-hhhhhccccc
Confidence 9999999999777666654 367899999999987 334433333333 4789998885
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=284.97 Aligned_cols=295 Identities=18% Similarity=0.150 Sum_probs=194.8
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
..+++.|+|++ +....+++..|.++++|++|+|++|.+.+ ..|..+ +++ ++|++|++++| .++ .
T Consensus 20 ~~~L~~L~Ls~----------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~-~~l-~~L~~L~Ls~N-~l~-~ 83 (520)
T 2z7x_B 20 SQKTTILNISQ----------NYISELWTSDILSLSKLRILIISHNRIQY--LDISVF-KFN-QELEYLDLSHN-KLV-K 83 (520)
T ss_dssp CTTCSEEECCS----------SCCCCCCHHHHTTCTTCCEEECCSSCCCE--EEGGGG-TTC-TTCCEEECCSS-CCC-E
T ss_pred cccccEEECCC----------CcccccChhhccccccccEEecCCCccCC--cChHHh-hcc-cCCCEEecCCC-cee-e
Confidence 36899999984 33456776667999999999999998874 446666 888 99999999999 888 4
Q ss_pred cchhhcCCCCCCEEEeecCCCCC-CcccccCCCCCCCEEEccCCcCCCcccccccCCCCC--CEEeccCCcC--CCCchh
Q 012260 166 LGGIIGSFTNLRRLVLTGNGVYG-GIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKL--RILDLSQNQF--DGNVPE 240 (467)
Q Consensus 166 ~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~ 240 (467)
+|.. .+++|++|++++|++++ .+|..++++++|++|++++|.+++ ..+..+++| +.|++++|.+ .+..|.
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc
Confidence 7766 79999999999999987 478999999999999999999885 355666666 8888888877 555555
Q ss_pred hhhCCC--------------------------------------------------------------------------
Q 012260 241 EMGNLT-------------------------------------------------------------------------- 246 (467)
Q Consensus 241 ~l~~l~-------------------------------------------------------------------------- 246 (467)
.+..+.
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 554432
Q ss_pred ---------CCCEEEccCCcCCCCccccc-----c---------------------------------------------
Q 012260 247 ---------NLLKLDLSSNVCSGKIPESL-----G--------------------------------------------- 267 (467)
Q Consensus 247 ---------~L~~L~L~~n~l~~~~p~~~-----~--------------------------------------------- 267 (467)
+|++|++++|+++|.+|..+ +
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc
Confidence 67777777777777676665 3
Q ss_pred ---CCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCC--CchhHhhcCCCCcEEeccCCCCCCCCchHHHhc
Q 012260 268 ---HLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGG--EIPEIWESLGGIVGIGLSGTGLVGKIPASMGIH 342 (467)
Q Consensus 268 ---~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 342 (467)
.+++|++|++++|++++ ..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|...+..
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred chhhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 44455555555555554 444445555555555555555554 334445555555555555555554454432224
Q ss_pred ccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 343 LKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 343 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+.....+ +.+++++|+..
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~ 457 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL-QELNVASNQLK 457 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSSCCC
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC-CEEECCCCcCC
Confidence 45555555555555544444332 45555555555555 555544433332 55666666544
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=9.5e-32 Score=282.24 Aligned_cols=144 Identities=16% Similarity=0.099 Sum_probs=114.3
Q ss_pred EEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCC-CCCCccccCCccEEEcccCCCcccccch
Q 012260 90 TELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVP-DNIPASFGSSLEELVFIDNPSFVGPLGG 168 (467)
Q Consensus 90 ~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip-~~l~~~l~~~L~~L~L~~n~~l~~~~p~ 168 (467)
+.+++++. ....+|..++ ++|++|++++|.+. .+| ..+ .++ ++|++|++++| .+++..|.
T Consensus 34 ~~l~ls~~----------~L~~ip~~~~---~~L~~L~Ls~N~i~---~~~~~~~-~~l-~~L~~L~Ls~N-~l~~~~~~ 94 (562)
T 3a79_B 34 SMVDYSNR----------NLTHVPKDLP---PRTKALSLSQNSIS---ELRMPDI-SFL-SELRVLRLSHN-RIRSLDFH 94 (562)
T ss_dssp CEEECTTS----------CCCSCCTTSC---TTCCEEECCSSCCC---CCCGGGT-TTC-TTCCEEECCSC-CCCEECTT
T ss_pred cEEEcCCC----------CCccCCCCCC---CCcCEEECCCCCcc---ccChhhh-ccC-CCccEEECCCC-CCCcCCHH
Confidence 56677642 2335777662 89999999999988 455 466 888 99999999999 99998899
Q ss_pred hhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCc-ccccccCCCCCCEEeccCCcCCCCchhhhhCCCC
Q 012260 169 IIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGG-FSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTN 247 (467)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 247 (467)
.|+++++|++|++++|+++ .+|.. .+++|++|++++|++++. .|..|+++++|++|++++|++++. .+..+++
T Consensus 95 ~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~ 168 (562)
T 3a79_B 95 VFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAH 168 (562)
T ss_dssp TTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTT
T ss_pred HhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhh
Confidence 9999999999999999996 56665 899999999999999974 568999999999999999998753 2333333
Q ss_pred C--CEEEccCCcC
Q 012260 248 L--LKLDLSSNVC 258 (467)
Q Consensus 248 L--~~L~L~~n~l 258 (467)
| ++|++++|.+
T Consensus 169 L~L~~L~L~~n~l 181 (562)
T 3a79_B 169 LHLSCILLDLVSY 181 (562)
T ss_dssp SCEEEEEEEESSC
T ss_pred ceeeEEEeecccc
Confidence 3 5555555544
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=5.1e-32 Score=271.34 Aligned_cols=275 Identities=20% Similarity=0.181 Sum_probs=224.7
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
..++++++|+++++.+. .+|..++..+ ++|++|++++| .+++..+..|.++++|++|++++|++++..|..++++
T Consensus 42 ~~l~~l~~l~l~~~~l~---~l~~~~~~~l-~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR---KLPAALLDSF-RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGGCCCSEEEEESCEES---EECTHHHHHC-CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCCceEEEecCCchh---hCChhHhccc-ccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 46789999999999887 7888765778 99999999999 9998777899999999999999999999889999999
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
++|++|++++|.++...+..|.++++|++|++++|++++..+..+.++++|++|++++|++++.. +..+++|++|++
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l 193 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 193 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeec
Confidence 99999999999999666666799999999999999999888888999999999999999998652 344556666655
Q ss_pred cccCCCCCChhHHh---------------hcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhc
Q 012260 278 SFNGFGNFGVPTFL---------------AEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIH 342 (467)
Q Consensus 278 s~n~l~~~~~p~~~---------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 342 (467)
++|.++++..+..+ ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+. .
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~ 270 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-K 270 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-T
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc-c
Confidence 55555432211111 1235788888888888754 4678889999999999999876677776 8
Q ss_pred ccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 343 LKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 343 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
+++|++|+|++|++++ +|..+..+++|++|++++|+++ .+|..+.....+ +.+++++|+..
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~N~i~ 331 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSIV 331 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCCC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcC-CEEECCCCccc
Confidence 8899999999999884 5666678889999999999988 677666555444 88999998864
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.9e-30 Score=255.55 Aligned_cols=262 Identities=18% Similarity=0.278 Sum_probs=155.5
Q ss_pred hhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCC
Q 012260 117 FTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGD 196 (467)
Q Consensus 117 f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 196 (467)
|..+++|++|++++|.+. .+| .+ ..+ ++|++|++++| .+.+..+ +.++++|++|++++|.....++ .+..
T Consensus 84 ~~~l~~L~~L~L~~n~i~---~~~-~~-~~l-~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~ 153 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKIT---DIS-AL-QNL-TNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLS-PLSN 153 (347)
T ss_dssp GTTCTTCCEEECCSSCCC---CCG-GG-TTC-TTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTT
T ss_pred hhcCCcCCEEEccCCccc---Cch-HH-cCC-CcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCccccc-chhh
Confidence 366666666666666554 233 23 555 66666666666 5554322 5566666666666664433333 2566
Q ss_pred CCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeee
Q 012260 197 LVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMD 276 (467)
Q Consensus 197 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 276 (467)
+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|+
T Consensus 154 l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~ 227 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEE
Confidence 6666666666666654433 5566666666666666663322 5666666666666666654433 56666677777
Q ss_pred ccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCC
Q 012260 277 LSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKL 356 (467)
Q Consensus 277 Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l 356 (467)
+++|++++ ++. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++ ++ .+. .+++|++|++++|++
T Consensus 228 l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~-~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 228 IGNNKITD--LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLN-NLSQLNSLFLNNNQL 299 (347)
T ss_dssp CCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCSSCC
T ss_pred ccCCccCC--Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhc-CCCCCCEEECcCCcC
Confidence 77766665 222 56666677777777766643 345666677777777776663 33 233 566777777777777
Q ss_pred CCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCC
Q 012260 357 QGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 357 ~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~ 405 (467)
++..|..+..+++|++|++++|++++..| +.....+ +.+++++|+.
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~l~~N~i 345 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM-DSADFANQVI 345 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC-SEESSSCC--
T ss_pred CCcChhHhhccccCCEEEccCCccccccC--hhhhhcc-ceeehhhhcc
Confidence 66666666667777777777777665444 3333333 6667766663
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=264.77 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=224.3
Q ss_pred ccChhhhhcCCCCceEecccccCCCCcCCCC-CCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC
Q 012260 111 TLNPLIFTSFKHLRKLFFYKCFTEKQVPVPD-NIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 111 ~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~-~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
.+|..+ .++|++|++++|.+. .+|. .+ .++ ++|++|++++| .+++..|..|+++++|++|++++|++++.
T Consensus 45 ~iP~~~---~~~L~~L~l~~n~i~---~~~~~~~-~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 45 SIPSGL---TEAVKSLDLSNNRIT---YISNSDL-QRC-VNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp SCCTTC---CTTCCEEECTTSCCC---EECTTTT-TTC-TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred cccccc---cccCcEEECCCCcCc---ccCHHHh-ccC-CCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 455544 358999999999887 5666 55 888 99999999999 99998888999999999999999999877
Q ss_pred cccccCCCCCCCEEEccCCcCCCccc-ccccCCCCCCEEeccCC-cCCCCchhhhhCCCCCCEEEccCCcCCCCcccccc
Q 012260 190 IPDKVGDLVGLEEITLSRNKLSGGFS-FSLDKLKKLRILDLSQN-QFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLG 267 (467)
Q Consensus 190 ~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 267 (467)
.+..++++++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..+.++++|++|++++|++++..|..+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 66679999999999999999996544 47899999999999999 47766677899999999999999999988899999
Q ss_pred CCCCCCeeeccccCCCCCChhH-HhhcCcCCcEEeccCccCCCCchhHhh---cCCCCcEEeccCCCCCC----CCchHH
Q 012260 268 HLKSLEFMDLSFNGFGNFGVPT-FLAEMDKLREVYLSGNFLGGEIPEIWE---SLGGIVGIGLSGTGLVG----KIPASM 339 (467)
Q Consensus 268 ~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~ip~~~ 339 (467)
.+++|++|++++|+++. +|. .+..+++|+.|++++|.+++..+..+. ..+.++.++++++.+++ .+|..+
T Consensus 196 ~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 196 SIQNVSHLILHMKQHIL--LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TCSEEEEEEEECSCSTT--HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred ccccCCeecCCCCcccc--chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 99999999999999976 444 456689999999999999976655443 46778999999999886 467777
Q ss_pred HhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCC
Q 012260 340 GIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVP 385 (467)
Q Consensus 340 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 385 (467)
. .+++|++|++++|+++...+..+..+++|++|++++|++++..|
T Consensus 274 ~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 274 N-QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp H-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred h-cccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7 89999999999999994433446899999999999999998776
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.4e-31 Score=278.17 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=140.3
Q ss_pred CCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCC
Q 012260 108 ANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVY 187 (467)
Q Consensus 108 ~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~ 187 (467)
....+|+.+ .++|++|++++|.+.+ ..|..+ .++ ++|++|++++| .+++..|..|+++++|++|++++|+++
T Consensus 16 ~l~~ip~~~---~~~L~~L~Ls~n~l~~--~~~~~~-~~l-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 16 SFTSIPSGL---TAAMKSLDLSFNKITY--IGHGDL-RAC-ANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp CCSSCCSCC---CTTCCEEECCSSCCCE--ECSSTT-SSC-TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccC---CCCccEEECcCCccCc--cChhhh-hcC-CcccEEECCCC-CcCccChhhccccccCCEEECCCCccC
Confidence 345677765 2789999999998874 445667 889 99999999999 999988899999999999999999999
Q ss_pred CCcccccCCCCCCCEEEccCCcCCC-cccccccCCCCCCEEeccCCcCCCCch-hhhhCCCCCCEEEccCCcCCCCcccc
Q 012260 188 GGIPDKVGDLVGLEEITLSRNKLSG-GFSFSLDKLKKLRILDLSQNQFDGNVP-EEMGNLTNLLKLDLSSNVCSGKIPES 265 (467)
Q Consensus 188 ~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~ 265 (467)
+..|..|+++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|++++..|..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8888889999999999999999987 357789999999999999999555565 67999999999999999999888887
Q ss_pred ccCCCCCCeeeccccC
Q 012260 266 LGHLKSLEFMDLSFNG 281 (467)
Q Consensus 266 ~~~l~~L~~L~Ls~n~ 281 (467)
+..+++|++|+++.|.
T Consensus 168 l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTTCSEEEEEEEECSB
T ss_pred hhccccCceEecccCc
Confidence 7665544444444433
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=6.3e-32 Score=258.92 Aligned_cols=243 Identities=22% Similarity=0.238 Sum_probs=148.4
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCc-CCCCccccccCCCCCCeee
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNV-CSGKIPESLGHLKSLEFMD 276 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 276 (467)
++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|. ++...|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554445555555555555555554 4433345555555566666
Q ss_pred ccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCch-HHHhcccCCCEEeccCCC
Q 012260 277 LSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPA-SMGIHLKKLSYLSLDNNK 355 (467)
Q Consensus 277 Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~ 355 (467)
+++|++++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|. .+. .+++|++|++++|+
T Consensus 112 l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 112 LDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR-GLHSLDRLLLHQNR 188 (285)
T ss_dssp CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTT-TCTTCCEEECCSSC
T ss_pred CCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhc-CccccCEEECCCCc
Confidence 66655555 33445555666666666666666555555666667777777777766 3333 343 67777777888877
Q ss_pred CCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCCC--CCCCcccCCCCCC
Q 012260 356 LQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASG--SIGQLKLCKKPDN 433 (467)
Q Consensus 356 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~--~~~~~~~C~~p~~ 433 (467)
+++..|..+..+++|+.|++++|++++..+..+.....+ +.+++++||+.|+|+..|+.++... .......|..|+.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL-QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC-CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc-CEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 777777777777888888888888874333323333333 7888999999999997665442211 1233478999999
Q ss_pred Ccccccccccc
Q 012260 434 PKAAMFSDATA 444 (467)
Q Consensus 434 ~~g~~~~d~~~ 444 (467)
.+|....+...
T Consensus 268 l~g~~l~~l~~ 278 (285)
T 1ozn_A 268 LAGRDLKRLAA 278 (285)
T ss_dssp GTTCBGGGSCG
T ss_pred hCCcChhhcCH
Confidence 88865554443
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.9e-31 Score=279.93 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=130.5
Q ss_pred ceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCC
Q 012260 65 HGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIP 144 (467)
Q Consensus 65 ~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~ 144 (467)
..|.|.. .+.+..+.+...+++.|+|++ +....+++..|.++++|++|++++|.+.+ ..|..+
T Consensus 14 ~~~~c~~----~~l~~ip~~~~~~l~~L~Ls~----------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--i~~~~~- 76 (606)
T 3vq2_A 14 ITYQCMD----QKLSKVPDDIPSSTKNIDLSF----------NPLKILKSYSFSNFSELQWLDLSRCEIET--IEDKAW- 76 (606)
T ss_dssp TEEECTT----SCCSSCCTTSCTTCCEEECTT----------SCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTT-
T ss_pred CceEccC----CCcccCCCCCCCCcCEEECCC----------CCcCEeChhhccCCccCcEEeCCCCcccc--cCHHHh-
Confidence 4688876 222333334457899999984 33456677667999999999999998873 335556
Q ss_pred ccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCC-cccccccCCCC
Q 012260 145 ASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSG-GFSFSLDKLKK 223 (467)
Q Consensus 145 ~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~ 223 (467)
+++ ++|++|++++| .+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+.++++
T Consensus 77 ~~l-~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 77 HGL-HHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TTC-TTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred hch-hhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 899 99999999999 9999889999999999999999999988888899999999999999999986 56999999999
Q ss_pred CCEEeccCCcCCCCchh
Q 012260 224 LRILDLSQNQFDGNVPE 240 (467)
Q Consensus 224 L~~L~L~~n~l~~~~p~ 240 (467)
|++|++++|++++..+.
T Consensus 155 L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCEEECCSSCCCEECTT
T ss_pred CCEEEccCCcceecChh
Confidence 99999999988765443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-31 Score=280.18 Aligned_cols=275 Identities=20% Similarity=0.181 Sum_probs=230.8
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
..+.+++.|++++|.+. .+|..++..+ ++|++|++++| .+++..|..|+++++|++|+|++|.+++..|..|+++
T Consensus 48 l~l~~l~~l~l~~~~l~---~lp~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR---KLPAALLDSF-RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGGCCCSEEEESSCEES---EECTHHHHHC-CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCceEEEeeCCCCC---CcCHHHHccC-CCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 45788999999999887 7888765778 99999999999 9999888899999999999999999999889999999
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++.. +..+++|+.|++
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 99999999999999777777899999999999999999988889999999999999999998653 344566666666
Q ss_pred cccCCCCCChhHHh---------------hcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhc
Q 012260 278 SFNGFGNFGVPTFL---------------AEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIH 342 (467)
Q Consensus 278 s~n~l~~~~~p~~~---------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 342 (467)
++|.++++..|..+ ...++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..|..+. .
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~ 276 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-K 276 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-T
T ss_pred ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc-C
Confidence 66655442222111 1135788888888888863 5688899999999999999987788887 8
Q ss_pred ccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 343 LKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 343 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+.....+ +.|++++|+..
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L-~~L~L~~N~l~ 337 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSIV 337 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCCC
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC-CEEECCCCCCC
Confidence 9999999999999985 6777778899999999999998 788776555554 89999999865
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5.9e-31 Score=257.39 Aligned_cols=233 Identities=18% Similarity=0.256 Sum_probs=179.2
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
+++++|++++| .++ .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|+
T Consensus 81 ~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45666666666 555 45666666666666666666665 55666666666666666666666 4555566666666666
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (467)
+++|++.+.+|..+.. . ..+..+.++++|++|++++|+++. +|..+..+++|++|++++|+++
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCCCCC
Confidence 6665555555543332 0 112235569999999999999985 7888999999999999999999
Q ss_pred CCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCc
Q 012260 309 GEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSA 388 (467)
Q Consensus 309 ~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 388 (467)
+ +|..+..+++|++|++++|.+.+.+|..+. .+++|++|+|++|++.+.+|..+..+++|++|+|++|++.|.+|..+
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 5 555799999999999999999999999888 89999999999999999999999999999999999999999999988
Q ss_pred ccccccCCeeeecCCCC
Q 012260 389 KFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 389 ~~~~~~~~~l~l~~Np~ 405 (467)
.....+ +.+++..|..
T Consensus 298 ~~L~~L-~~l~l~~~~~ 313 (328)
T 4fcg_A 298 AQLPAN-CIILVPPHLQ 313 (328)
T ss_dssp GGSCTT-CEEECCGGGS
T ss_pred hhccCc-eEEeCCHHHH
Confidence 777665 7787776653
No 46
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.3e-29 Score=249.56 Aligned_cols=285 Identities=21% Similarity=0.275 Sum_probs=239.4
Q ss_pred ceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCccccc
Q 012260 87 VHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPL 166 (467)
Q Consensus 87 ~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~ 166 (467)
.+++.|++++. ....++. |..+++|++|++++|.+. .+|. + ..+ ++|++|++++| .++. +
T Consensus 44 ~~L~~L~l~~~----------~i~~~~~--~~~~~~L~~L~l~~n~i~---~~~~-~-~~l-~~L~~L~L~~n-~i~~-~ 103 (347)
T 4fmz_A 44 ESITKLVVAGE----------KVASIQG--IEYLTNLEYLNLNGNQIT---DISP-L-SNL-VKLTNLYIGTN-KITD-I 103 (347)
T ss_dssp TTCSEEECCSS----------CCCCCTT--GGGCTTCCEEECCSSCCC---CCGG-G-TTC-TTCCEEECCSS-CCCC-C
T ss_pred ccccEEEEeCC----------ccccchh--hhhcCCccEEEccCCccc---cchh-h-hcC-CcCCEEEccCC-cccC-c
Confidence 57888888743 2334543 489999999999999887 4555 5 788 99999999999 8876 3
Q ss_pred chhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCC
Q 012260 167 GGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLT 246 (467)
Q Consensus 167 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 246 (467)
+.+.++++|++|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..++
T Consensus 104 -~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~ 177 (347)
T 4fmz_A 104 -SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLT 177 (347)
T ss_dssp -GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred -hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCC
Confidence 468999999999999999976544 8899999999999997665544 48999999999999999986544 88999
Q ss_pred CCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEec
Q 012260 247 NLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGL 326 (467)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 326 (467)
+|++|++++|.+.+..+ +..+++|++|++++|.+++ ..+ +..+++|++|++++|++++..+ +..+++|++|++
T Consensus 178 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEEccCCccccccc--ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 99999999999985433 8899999999999999988 333 7889999999999999997655 889999999999
Q ss_pred cCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 327 SGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 327 s~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
++|.+++ ++ .+. .+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+.....+ +.+++++|++.
T Consensus 251 ~~n~l~~-~~-~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~ 324 (347)
T 4fmz_A 251 GTNQISD-IN-AVK-DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL-TTLFLSQNHIT 324 (347)
T ss_dssp CSSCCCC-CG-GGT-TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC-SEEECCSSSCC
T ss_pred CCCccCC-Ch-hHh-cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC-CEEEccCCccc
Confidence 9999984 54 444 799999999999999964 468899999999999999997777666555554 89999999987
Q ss_pred CcCc
Q 012260 407 CIDE 410 (467)
Q Consensus 407 C~c~ 410 (467)
...+
T Consensus 325 ~~~~ 328 (347)
T 4fmz_A 325 DIRP 328 (347)
T ss_dssp CCGG
T ss_pred cccC
Confidence 6655
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.9e-31 Score=258.26 Aligned_cols=240 Identities=20% Similarity=0.206 Sum_probs=174.2
Q ss_pred CcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcc--cccchhhcCCCCCCEEEeecCCC
Q 012260 109 NSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFV--GPLGGIIGSFTNLRRLVLTGNGV 186 (467)
Q Consensus 109 ~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~--~~~p~~l~~l~~L~~L~L~~n~l 186 (467)
...+|..+ .++|++|++++|.+. .+|..++.++ ++|++|++++| .++ +..|..+.++++|++|++++|.+
T Consensus 19 l~~ip~~~---~~~l~~L~L~~n~l~---~i~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 19 LTSVPTGI---PSSATRLELESNKLQ---SLPHGVFDKL-TQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp CSSCCSCC---CTTCCEEECCSSCCC---CCCTTTTTTC-TTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred cccCCCCC---CCCCCEEECCCCccC---ccCHhHhhcc-ccCCEEECCCC-ccCcccCcccccccccccCEEECCCCcc
Confidence 45566644 368999999999887 7887755888 99999999999 887 34578888899999999999999
Q ss_pred CCCcccccCCCCCCCEEEccCCcCCCccc-ccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCC-Cccc
Q 012260 187 YGGIPDKVGDLVGLEEITLSRNKLSGGFS-FSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSG-KIPE 264 (467)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~ 264 (467)
. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+|.
T Consensus 91 ~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred c-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 5 567778999999999999999986655 578888888888888888887777778888888888888888765 4566
Q ss_pred cccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhccc
Q 012260 265 SLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLK 344 (467)
Q Consensus 265 ~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 344 (467)
.+..+++|++|++++|++++ ..|..+..+++|++|++++|++++..+..+. .++
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------------------------~l~ 223 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-------------------------CLN 223 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSGGGT-------------------------TCT
T ss_pred HHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccChhhcc-------------------------Ccc
Confidence 66666666666666666655 3344445555555555555555443333333 455
Q ss_pred CCCEEeccCCCCCCCCchhhhCCC-CCCEEEccCCccccc
Q 012260 345 KLSYLSLDNNKLQGNVPEEFGVLE-FVGEINLENNNLSGR 383 (467)
Q Consensus 345 ~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~ 383 (467)
+|++|++++|++++..|..+..++ +|++|++++|.+++.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 566666666666555555555553 666666666666644
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=273.85 Aligned_cols=190 Identities=21% Similarity=0.230 Sum_probs=148.2
Q ss_pred ccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcc-ccccCCCCCCeeeccccCCCCCChhHHhhcCcC
Q 012260 218 LDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIP-ESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDK 296 (467)
Q Consensus 218 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 296 (467)
+.++++|++|++++|.+++. +..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+++ ..|..+..+++
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~ 446 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSS 446 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTT
T ss_pred ccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-cchhhhhcCCc
Confidence 33444444444444444432 2236666777777777777766555 578899999999999999988 67888899999
Q ss_pred CcEEeccCccCC-CCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEc
Q 012260 297 LREVYLSGNFLG-GEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINL 375 (467)
Q Consensus 297 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 375 (467)
|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+. .+++|++|++++|++++..|..+..+++|+.|++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh-cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 999999999998 57888999999999999999999977788887 8999999999999999988888999999999999
Q ss_pred cCCcccccCCCCccc---ccccCCeeeecCCCCCCcCcccc
Q 012260 376 ENNNLSGRVPFSAKF---STKVGEKLKLKGNPDLCIDEKFS 413 (467)
Q Consensus 376 s~N~l~g~ip~~~~~---~~~~~~~l~l~~Np~~C~c~~~~ 413 (467)
++|.+++..|..... ... ..-.+.+.+ .|..+...
T Consensus 526 ~~N~~~~~~~~~~~~~~wl~~--~~~~~~~~~-~C~~~~~~ 563 (570)
T 2z63_A 526 HTNPWDCSCPRIDYLSRWLNK--NSQKEQGSA-KCSGSGKP 563 (570)
T ss_dssp CSSCBCCCTTTTHHHHHHHHH--TGGGEESCC-BBTTTCCB
T ss_pred cCCcccCCCcchHHHHHHHHh--ccccCCCch-hhCCCCCc
Confidence 999999999875432 111 123455666 77655333
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.7e-29 Score=257.59 Aligned_cols=283 Identities=25% Similarity=0.322 Sum_probs=163.6
Q ss_pred ceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCccccc
Q 012260 87 VHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPL 166 (467)
Q Consensus 87 ~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~ 166 (467)
.+++.|+|++. ....+++ |.++++|++|++++|.+. .++. + +++ ++|++|++++| .+++..
T Consensus 68 ~~L~~L~Ls~n----------~l~~~~~--~~~l~~L~~L~l~~n~l~---~~~~-~-~~l-~~L~~L~L~~n-~l~~~~ 128 (466)
T 1o6v_A 68 NNLTQINFSNN----------QLTDITP--LKNLTKLVDILMNNNQIA---DITP-L-ANL-TNLTGLTLFNN-QITDID 128 (466)
T ss_dssp TTCCEEECCSS----------CCCCCGG--GTTCTTCCEEECCSSCCC---CCGG-G-TTC-TTCCEEECCSS-CCCCCG
T ss_pred cCCCEEECCCC----------ccCCchh--hhccccCCEEECCCCccc---cChh-h-cCC-CCCCEEECCCC-CCCCCh
Confidence 46777777742 2233444 366666666666666655 2333 3 555 66666666666 555532
Q ss_pred chhhcCCCCCCEEEeecCCCCCCcc-------------------cccCCCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 012260 167 GGIIGSFTNLRRLVLTGNGVYGGIP-------------------DKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRIL 227 (467)
Q Consensus 167 p~~l~~l~~L~~L~L~~n~l~~~~p-------------------~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 227 (467)
+ +.++++|++|++++|.+.+... ..+.++++|++|++++|.+++. ..+..+++|++|
T Consensus 129 ~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 204 (466)
T 1o6v_A 129 P--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 204 (466)
T ss_dssp G--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred H--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEE
Confidence 2 5556666666666555533210 1144455555566666555532 124455555555
Q ss_pred eccCCcCCCCch--------------------hhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCCh
Q 012260 228 DLSQNQFDGNVP--------------------EEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGV 287 (467)
Q Consensus 228 ~L~~n~l~~~~p--------------------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 287 (467)
++++|.+++..| +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +
T Consensus 205 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~ 280 (466)
T 1o6v_A 205 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--I 280 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC--C
T ss_pred EecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc--c
Confidence 555555543332 234445555555555555554332 5555666666666666655 2
Q ss_pred hHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCC
Q 012260 288 PTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVL 367 (467)
Q Consensus 288 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 367 (467)
+. +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +. .+++|++|++++|++++. ..+..+
T Consensus 281 ~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l 352 (466)
T 1o6v_A 281 SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS-SLTKLQRLFFYNNKVSDV--SSLANL 352 (466)
T ss_dssp GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG-GCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc-cCccCCEeECCCCccCCc--hhhccC
Confidence 22 5566666666666666665444 5667777777777777775444 33 667777777777777754 356777
Q ss_pred CCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCC
Q 012260 368 EFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLC 407 (467)
Q Consensus 368 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C 407 (467)
++|+.|++++|++++..| +.....+ +.+++++|++..
T Consensus 353 ~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~~~~ 389 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLTP--LANLTRI-TQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCBCGG--GTTCTTC-CEEECCCEEEEC
T ss_pred CCCCEEeCCCCccCccch--hhcCCCC-CEEeccCCcccC
Confidence 777888888887776666 3333333 677888887765
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=6.8e-29 Score=254.57 Aligned_cols=262 Identities=24% Similarity=0.329 Sum_probs=185.8
Q ss_pred ceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCccccc
Q 012260 87 VHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPL 166 (467)
Q Consensus 87 ~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~ 166 (467)
.+++.|++.+. ....+|. +..+++|++|++++|.+. .+|. + .++ ++|++|++++| .+.+..
T Consensus 46 ~~l~~L~l~~~----------~i~~l~~--~~~l~~L~~L~Ls~n~l~---~~~~-~-~~l-~~L~~L~l~~n-~l~~~~ 106 (466)
T 1o6v_A 46 DQVTTLQADRL----------GIKSIDG--VEYLNNLTQINFSNNQLT---DITP-L-KNL-TKLVDILMNNN-QIADIT 106 (466)
T ss_dssp HTCCEEECCSS----------CCCCCTT--GGGCTTCCEEECCSSCCC---CCGG-G-TTC-TTCCEEECCSS-CCCCCG
T ss_pred ccccEEecCCC----------CCccCcc--hhhhcCCCEEECCCCccC---Cchh-h-hcc-ccCCEEECCCC-ccccCh
Confidence 57888888743 2334553 488999999999999887 4555 5 888 99999999999 898865
Q ss_pred chhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCccc-------------------ccccCCCCCCEE
Q 012260 167 GGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFS-------------------FSLDKLKKLRIL 227 (467)
Q Consensus 167 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-------------------~~l~~l~~L~~L 227 (467)
+ ++++++|++|++++|.+++..+ +.++++|++|++++|.+++... ..+.++++|+.|
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 182 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEE
T ss_pred h--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEE
Confidence 5 9999999999999999977644 8999999999999999875321 125667788888
Q ss_pred eccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccC
Q 012260 228 DLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFL 307 (467)
Q Consensus 228 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 307 (467)
++++|.+++. + .+..+++|++|++++|.+++..| ++.+++|++|++++|++++ + ..+..+++|+.|++++|.+
T Consensus 183 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 183 DISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp ECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCC
T ss_pred ECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCcc
Confidence 8888888753 3 47788888888888888876554 5667777777777777665 2 2355666677777777766
Q ss_pred CCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCC
Q 012260 308 GGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVP 385 (467)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 385 (467)
++..+ +..+++|++|++++|.+++ ++. +. .+++|++|++++|++++..+ +..+++|+.|++++|++++..|
T Consensus 256 ~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 256 SNLAP--LSGLTKLTELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred ccchh--hhcCCCCCEEECCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 65544 5566666666666666663 232 33 55566666666666654333 4555556666666665554433
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=1.1e-31 Score=260.76 Aligned_cols=251 Identities=23% Similarity=0.241 Sum_probs=207.8
Q ss_pred hhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCc-ccccchhhc-------CCCCCCEEEeecCCCC
Q 012260 116 IFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSF-VGPLGGIIG-------SFTNLRRLVLTGNGVY 187 (467)
Q Consensus 116 ~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~ 187 (467)
+++..++|++|++++|.+ .+|..++ ..|++|++++| .+ .+.+|..+. ++++|++|++++|+++
T Consensus 38 ~~~~~~~L~~l~l~~n~l----~~p~~~~----~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE----ADLGQFT----DIIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEEECTTHHHHCCTT----CCCHHHH----HHHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred EEccCCCceeEeeccccc----ccHHHHH----HHHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 447778899999999876 4565442 55899999999 88 567787776 7999999999999999
Q ss_pred CCccccc--CCCCCCCEEEccCCcCCCcccccccCC-----CCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCC
Q 012260 188 GGIPDKV--GDLVGLEEITLSRNKLSGGFSFSLDKL-----KKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSG 260 (467)
Q Consensus 188 ~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 260 (467)
+.+|..+ +.+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++++++|++|++++|++.+
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 8898876 8999999999999999987 7777776 899999999999998888899999999999999999876
Q ss_pred C--ccccc--cCCCCCCeeeccccCCCCC-Chh-HHhhcCcCCcEEeccCccCCCCch-hHhhcCCCCcEEeccCCCCCC
Q 012260 261 K--IPESL--GHLKSLEFMDLSFNGFGNF-GVP-TFLAEMDKLREVYLSGNFLGGEIP-EIWESLGGIVGIGLSGTGLVG 333 (467)
Q Consensus 261 ~--~p~~~--~~l~~L~~L~Ls~n~l~~~-~~p-~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 333 (467)
. .+..+ ..+++|++|++++|++++. .++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|+++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 5 33344 7889999999999999851 122 344677899999999999988764 45566789999999999998
Q ss_pred CCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccc
Q 012260 334 KIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSG 382 (467)
Q Consensus 334 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 382 (467)
.+|..++ ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 267 ~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8887664 7899999999999865 55 8888899999999998875
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=8.4e-30 Score=244.12 Aligned_cols=223 Identities=20% Similarity=0.197 Sum_probs=131.3
Q ss_pred eEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEE
Q 012260 125 KLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEIT 204 (467)
Q Consensus 125 ~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 204 (467)
+++.+++.+. .+|..+| ++|++|++++| .+++..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 15 ~~~c~~~~l~---~ip~~~~----~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 15 TTSCPQQGLQ---AVPVGIP----AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp EEECCSSCCS---SCCTTCC----TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEEcCcCCcc---cCCcCCC----CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 3444444443 5665543 67777777777 77766666677777777777777777666677777777777777
Q ss_pred ccCCc-CCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCC
Q 012260 205 LSRNK-LSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFG 283 (467)
Q Consensus 205 Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 283 (467)
+++|. ++...|..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 77776 66555666667777777777777776665666666666777776666666544445555666666666666555
Q ss_pred CCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCC
Q 012260 284 NFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 284 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
+ ..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 167 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 167 S-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-PLRALQYLRLNDNPWV 238 (285)
T ss_dssp E-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-TCTTCCEEECCSSCEE
T ss_pred c-cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc-cCcccCEEeccCCCcc
Confidence 4 2222344455555555555555544444444444444444444444422222222 3444444444444443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.9e-29 Score=254.65 Aligned_cols=229 Identities=21% Similarity=0.206 Sum_probs=191.0
Q ss_pred CCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCC
Q 012260 121 KHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGL 200 (467)
Q Consensus 121 ~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 200 (467)
++|++|+|++|.+.+ ..|..+ .++ ++|++|+|++| .+++..|..|.++++|++|+|++|++++..+..|.++++|
T Consensus 75 ~~l~~L~L~~n~i~~--~~~~~~-~~l-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM--IQADTF-RHL-HHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCE--ECTTTT-TTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCcCce--ECHHHc-CCC-CCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 578999999998874 345556 888 99999999999 9998888899999999999999999988878889999999
Q ss_pred CEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCch-hhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccc
Q 012260 201 EEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVP-EEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSF 279 (467)
Q Consensus 201 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 279 (467)
++|++++|.++...+..|.++++|+.|++++|...+.++ ..|.++++|++|++++|++++. | .+..+++|++|++++
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSG 227 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcC
Confidence 999999999997777789999999999999854444444 4688999999999999999854 4 577888999999999
Q ss_pred cCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCC
Q 012260 280 NGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQG 358 (467)
Q Consensus 280 n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 358 (467)
|++++ ..|..+.++++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|...+..+++|+.|+|++|.+..
T Consensus 228 N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 228 NHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence 99888 56778888888999999998888888888888888888888888888 4444433377888888888887653
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.6e-28 Score=250.83 Aligned_cols=256 Identities=18% Similarity=0.115 Sum_probs=132.7
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
..+++|++|++++|.+.+ +| + +.+ ++|++|++++| .+++ +| ++++++|++|++++|++++. + ++.+
T Consensus 82 ~~l~~L~~L~Ls~N~l~~---~~--~-~~l-~~L~~L~L~~N-~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l 147 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTN---LD--V-TPL-TKLTYLNCDTN-KLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHN 147 (457)
T ss_dssp TTCTTCSEEECCSSCCSC---CC--C-TTC-TTCCEEECCSS-CCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTC
T ss_pred ccCCCCCEEECcCCCCce---ee--c-CCC-CcCCEEECCCC-cCCe-ec--CCCCCcCCEEECCCCcccee-c--cccC
Confidence 445555555555554442 22 3 444 45555555555 4444 22 44555555555555555442 1 4445
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|+.|++++|++++. .++.+++|++|++
T Consensus 148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence 55555555555333333 24455566666666666654 23 55556666666666666543 2556666666666
Q ss_pred cccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCC-------CCcEEeccCCCCCCCCchHHHhcccCCCEEe
Q 012260 278 SFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLG-------GIVGIGLSGTGLVGKIPASMGIHLKKLSYLS 350 (467)
Q Consensus 278 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 350 (467)
++|++++ +| +..+++|+.|++++|++++..+..+..++ +|+.|++++|.+.+.+|. . .+++|+.|+
T Consensus 220 s~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~ 292 (457)
T 3bz5_A 220 SSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--E-GCRKIKELD 292 (457)
T ss_dssp CSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--T-TCTTCCCCC
T ss_pred cCCcccc--cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--c-ccccCCEEE
Confidence 6666665 23 45566666666666666655443333332 334444444444444442 1 455666666
Q ss_pred ccCCCCCCCCch--------hhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 351 LDNNKLQGNVPE--------EFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 351 Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
+++|+..+.+|. .+..+++|++|++++|+++| ++ +.....+ +.+++++|...
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L-~~L~l~~N~l~ 352 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKL-KSLSCVNAHIQ 352 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTC-SEEECCSSCCC
T ss_pred CCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcC-cEEECCCCCCC
Confidence 666655544442 13344566666666666665 33 3333333 56666666643
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.7e-29 Score=251.54 Aligned_cols=228 Identities=21% Similarity=0.233 Sum_probs=194.3
Q ss_pred CCCceEecccccCCCCcCCC-CCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCC
Q 012260 121 KHLRKLFFYKCFTEKQVPVP-DNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVG 199 (467)
Q Consensus 121 ~~L~~L~L~~~~~~~~~~ip-~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 199 (467)
++++.|+|++|.+. .++ ..+ .++ ++|++|+|++| .+++..+..|.++++|++|+|++|++++..+..|..+++
T Consensus 64 ~~l~~L~L~~n~i~---~~~~~~~-~~l-~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ---IIKVNSF-KHL-RHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCCCC---EECTTTT-SSC-SSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCcCC---eeCHHHh-hCC-CCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 67899999999887 444 455 888 99999999999 899888889999999999999999998877788999999
Q ss_pred CCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCch-hhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeecc
Q 012260 200 LEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVP-EEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLS 278 (467)
Q Consensus 200 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 278 (467)
|++|++++|.++...+..|.++++|++|++++|...+.++ ..|.++++|++|++++|+++ .+| .+..+++|++|+++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECT
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECC
Confidence 9999999999998777789999999999999855444444 46889999999999999998 455 47888999999999
Q ss_pred ccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCC
Q 012260 279 FNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQG 358 (467)
Q Consensus 279 ~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 358 (467)
+|++++ ..|..+..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|...+..+++|+.|+|++|.+..
T Consensus 216 ~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 216 GNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccC
Confidence 999988 55778888999999999999999888888888899999999999988 4554443378888999999888753
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.4e-28 Score=249.43 Aligned_cols=277 Identities=18% Similarity=0.078 Sum_probs=214.0
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
..+++.|++++. . ...+| .+ ..+++|++|++++|.+. .+| + +.+ ++|++|++++| .+++.
T Consensus 41 l~~L~~L~Ls~n---------~-l~~~~-~l-~~l~~L~~L~Ls~n~l~---~~~--~-~~l-~~L~~L~Ls~N-~l~~~ 100 (457)
T 3bz5_A 41 LATLTSLDCHNS---------S-ITDMT-GI-EKLTGLTKLICTSNNIT---TLD--L-SQN-TNLTYLACDSN-KLTNL 100 (457)
T ss_dssp HTTCCEEECCSS---------C-CCCCT-TG-GGCTTCSEEECCSSCCS---CCC--C-TTC-TTCSEEECCSS-CCSCC
T ss_pred cCCCCEEEccCC---------C-cccCh-hh-cccCCCCEEEccCCcCC---eEc--c-ccC-CCCCEEECcCC-CCcee
Confidence 357888888842 2 23344 44 89999999999999887 454 5 778 89999999999 88874
Q ss_pred cchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCC
Q 012260 166 LGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNL 245 (467)
Q Consensus 166 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 245 (467)
| ++++++|++|++++|++++. | ++.+++|++|++++|++++. .+.++++|++|++++|+..+.+ .+..+
T Consensus 101 -~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 101 -D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred -e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccC
Confidence 3 88899999999999999774 4 88899999999999999874 3788999999999999766566 47889
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEe
Q 012260 246 TNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIG 325 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 325 (467)
++|++|++++|++++ +| +..+++|++|++++|+++++ .++.+++|++|++++|++++ +| +..+++|++|+
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 999999999999986 44 78889999999999999883 26788999999999999997 45 78889999999
Q ss_pred ccCCCCCCCCchHHHhccc-------CCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccc-------
Q 012260 326 LSGTGLVGKIPASMGIHLK-------KLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFS------- 391 (467)
Q Consensus 326 Ls~N~l~~~ip~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~------- 391 (467)
+++|++++..+..+. .++ +|+.|++++|++.+.+| +..+++|+.|++++|.+.|.+|......
T Consensus 240 l~~N~l~~~~~~~l~-~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 240 CSVNPLTELDVSTLS-KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CCSSCCSCCCCTTCT-TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred eeCCcCCCcCHHHCC-CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 999999964333222 222 45566666666666666 4678899999999999888887532111
Q ss_pred cccCCeeeecCCCCC
Q 012260 392 TKVGEKLKLKGNPDL 406 (467)
Q Consensus 392 ~~~~~~l~l~~Np~~ 406 (467)
...++.+++++|...
T Consensus 317 ~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 317 NPKLVYLYLNNTELT 331 (457)
T ss_dssp CTTCCEEECTTCCCS
T ss_pred cccCCEEECCCCccc
Confidence 012256777777654
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.9e-30 Score=251.98 Aligned_cols=248 Identities=23% Similarity=0.215 Sum_probs=209.5
Q ss_pred ccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCC-CCCcccccC-------CCCCCCEEEccCCcCCCcccc
Q 012260 145 ASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGV-YGGIPDKVG-------DLVGLEEITLSRNKLSGGFSF 216 (467)
Q Consensus 145 ~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~p~ 216 (467)
+.. ++|++|++++| .+ .+|..+... |++|++++|++ ...+|..+. ++++|++|++++|++++..|.
T Consensus 40 ~~~-~~L~~l~l~~n-~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 40 GGG-RSLEYLLKRVD-TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEE-EECTTHHHHCC-TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred ccC-CCceeEeeccc-cc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 445 78999999999 88 788877654 99999999998 445666665 799999999999999999998
Q ss_pred cc--cCCCCCCEEeccCCcCCCCchhhhhCC-----CCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCC--h
Q 012260 217 SL--DKLKKLRILDLSQNQFDGNVPEEMGNL-----TNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFG--V 287 (467)
Q Consensus 217 ~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~--~ 287 (467)
.+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..|+++++|++|++++|++.+ . .
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 191 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGL 191 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH-HHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc-chHH
Confidence 76 8999999999999999977 8778877 999999999999998888999999999999999999876 3 3
Q ss_pred hHHh--hcCcCCcEEeccCccCCCC---chhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCch
Q 012260 288 PTFL--AEMDKLREVYLSGNFLGGE---IPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPE 362 (467)
Q Consensus 288 p~~~--~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~ 362 (467)
+..+ ..+++|++|++++|++++. ....+..+++|++|++++|++++..|...+..+++|++|+|++|+++ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 4444 7899999999999999842 22445678999999999999998775433336899999999999999 7787
Q ss_pred hhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 363 EFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 363 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
.+. ++|++|++++|++++. |. +.....+ +.+++++|++.
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L-~~L~L~~N~l~ 309 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PS-PDELPQV-GNLSLKGNPFL 309 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CC-TTTSCEE-EEEECTTCTTT
T ss_pred hcc--CCceEEECCCCCCCCC-hh-HhhCCCC-CEEeccCCCCC
Confidence 766 7999999999999955 66 5445444 89999999975
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.3e-28 Score=261.17 Aligned_cols=145 Identities=24% Similarity=0.239 Sum_probs=127.0
Q ss_pred ccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCc
Q 012260 111 TLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGI 190 (467)
Q Consensus 111 ~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 190 (467)
+||+.+ -+++++|+|++|.+. .+|+..+.++ ++|++|+|++| .+++..|..|.++++|++|+|++|++++..
T Consensus 45 ~vP~~l---p~~~~~LdLs~N~i~---~l~~~~f~~l-~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 45 KIPDNL---PFSTKNLDLSFNPLR---HLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp SCCSSS---CTTCCEEECTTSCCC---EECTTTTTTC-TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred ccCCCC---CcCCCEEEeeCCCCC---CCCHHHHhCC-CCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 455433 136899999999998 6776444899 99999999999 999877889999999999999999998888
Q ss_pred ccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCC-CchhhhhCCCCCCEEEccCCcCCCCcc
Q 012260 191 PDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDG-NVPEEMGNLTNLLKLDLSSNVCSGKIP 263 (467)
Q Consensus 191 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p 263 (467)
+..|+++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 8899999999999999999998888889999999999999999975 467889999999999999998875433
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=3.9e-28 Score=231.39 Aligned_cols=235 Identities=21% Similarity=0.185 Sum_probs=132.2
Q ss_pred CCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEc
Q 012260 174 TNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDL 253 (467)
Q Consensus 174 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 253 (467)
++|++|++++|++++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34666666666665555555666666666666666665554555555666666666666655554455555555555555
Q ss_pred cCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCC
Q 012260 254 SSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVG 333 (467)
Q Consensus 254 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 333 (467)
++|.+++..+..+..+++|++|++++|+++++.+ |..+..+++|++|++++|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l------------------------~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKL------------------------PEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC------------------------CGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecC------------------------chhhccCCCCCEEECCCCCCCc
Confidence 5555554444445555555555555555544333 4444555555555555555553
Q ss_pred CCchHHHhcccCCC----EEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCc-ccccccCCeeeecCCCCCCc
Q 012260 334 KIPASMGIHLKKLS----YLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSA-KFSTKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 334 ~ip~~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~-~~~~~~~~~l~l~~Np~~C~ 408 (467)
..+..+. .+++|+ .|++++|++++..+..+. ..+|+.|++++|+++ .+|... ..... ++.+++++||+.|+
T Consensus 164 ~~~~~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~~l~~-L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 164 IYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK-SVPDGIFDRLTS-LQKIWLHTNPWDCS 239 (276)
T ss_dssp ECGGGGH-HHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS-CCCTTTTTTCCS-CCEEECCSSCBCCC
T ss_pred CCHHHhh-hhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee-ecCHhHhccccc-ccEEEccCCccccc
Confidence 3333333 444444 677777777754444433 347888888888887 444443 33333 37889999999999
Q ss_pred Cc-ccccCCC---CCCCCCCcccCCCCCCCcc
Q 012260 409 DE-KFSIGKN---ASGSIGQLKLCKKPDNPKA 436 (467)
Q Consensus 409 c~-~~~~~~~---~~~~~~~~~~C~~p~~~~g 436 (467)
|+ +.|+..+ .........+|..|..+..
T Consensus 240 c~~l~~l~~~~~~~~~~~~~~~~C~~~~~~~~ 271 (276)
T 2z62_A 240 CPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVR 271 (276)
T ss_dssp TTTTHHHHHHHHHTGGGBCSCCBBTTTCCBGG
T ss_pred CCchHHHHHHHHhcccccCCCceeeCCCCccc
Confidence 97 3333221 1122333468988865443
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.9e-29 Score=244.22 Aligned_cols=216 Identities=19% Similarity=0.194 Sum_probs=104.4
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
++|++|++++| .+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+
T Consensus 34 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 45555555555 5555545555555555555555555544333 555555555555555554221 224555555
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHh-hcCcCCcEEeccCccC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFL-AEMDKLREVYLSGNFL 307 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l 307 (467)
+++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++ ..+..+ ..+++|++|++++|.+
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-ccHHHHhhccCcCCEEECCCCcC
Confidence 555555533322 23445555555555554444445555555555555555544 222222 2445555555555555
Q ss_pred CCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 308 GGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
++..+ ...+++|++|++++|+++ .+|..+. .+++|++|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 182 YDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccc--ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 43311 112445555555555554 3333333 4455555555555554 33444444455555555555554
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1e-29 Score=247.38 Aligned_cols=238 Identities=23% Similarity=0.169 Sum_probs=103.9
Q ss_pred EEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCc
Q 012260 154 LVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQ 233 (467)
Q Consensus 154 L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 233 (467)
.+++.+ .+...++..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|+
T Consensus 15 ~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred eecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 333443 3333333333334445555555555444444444445555555555554443322 4444455555555544
Q ss_pred CCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchh
Q 012260 234 FDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPE 313 (467)
Q Consensus 234 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 313 (467)
+++.. ..++|++|++++|++++..+. .+++|++|++++|++++ ..+..+..+++|++|++++|.+++..+.
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHH
Confidence 44211 124445555555544433222 13444455555554444 2233344444455555555544444333
Q ss_pred Hh-hcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCccccc
Q 012260 314 IW-ESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFST 392 (467)
Q Consensus 314 ~~-~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 392 (467)
.+ ..+++|++|++++|.++ .++... .+++|++|+|++|++++ +|..+..+++|++|++++|+++ .+|..+....
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHhhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 33 23444555555555444 222221 24445555555555442 2223444444555555555444 3444333222
Q ss_pred ccCCeeeecCCCCCCcC
Q 012260 393 KVGEKLKLKGNPDLCID 409 (467)
Q Consensus 393 ~~~~~l~l~~Np~~C~c 409 (467)
.+ +.+++++|++.|++
T Consensus 238 ~L-~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 238 NL-EHFDLRGNGFHCGT 253 (317)
T ss_dssp TC-CEEECTTCCCBHHH
T ss_pred CC-CEEEccCCCccCcC
Confidence 22 44455555554444
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=4.7e-28 Score=232.61 Aligned_cols=211 Identities=25% Similarity=0.244 Sum_probs=140.0
Q ss_pred CCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCee
Q 012260 196 DLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFM 275 (467)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 275 (467)
+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++. +.. +.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEE
Confidence 3444444444444444 2222221 3455555555555544444555555555555555555432 211 455666666
Q ss_pred eccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCC
Q 012260 276 DLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNK 355 (467)
Q Consensus 276 ~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 355 (467)
++++|+++. +|..+..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|...+..+++|+.|+|++|+
T Consensus 83 ~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence 666666654 4555566677777777777777666677777888888888888887 4444443378899999999999
Q ss_pred CCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCC
Q 012260 356 LQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGK 416 (467)
Q Consensus 356 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~ 416 (467)
+++..+..+..+++|+.|+|++|+++ .+|..++....+ +.+++++|||.|+|++.|+.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L-~~l~L~~Np~~C~c~~~~l~~ 218 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL-PFAFLHGNPWLCNCEILYFRR 218 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC-SEEECCSCCBCCSGGGHHHHH
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC-CeEEeCCCCccCcCccHHHHH
Confidence 98766667788999999999999998 888887665544 899999999999999766543
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.1e-29 Score=256.55 Aligned_cols=245 Identities=18% Similarity=0.187 Sum_probs=189.2
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
++|++|+|++| .+++..|..|+++++|++|+|++|.+++..| ++.+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 57888888888 8888777788888888888888888876655 7888888888888888874432 37888888
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhh-cCcCCcEEeccCccC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLA-EMDKLREVYLSGNFL 307 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~L~~n~l 307 (467)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++ ..|..+. .+++|+.|+|++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCcc
Confidence 888888866553 45788888888888888778888888888888888888887 4555554 688888888888888
Q ss_pred CCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccc-ccCCC
Q 012260 308 GGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS-GRVPF 386 (467)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-g~ip~ 386 (467)
++..+ ...+++|++|+|++|.+++ +|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|.++ +.+|.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 86533 2357889999999999884 555566 78899999999999984 6777888889999999999887 55554
Q ss_pred CcccccccCCeeeec-------CCCCCCcCcc
Q 012260 387 SAKFSTKVGEKLKLK-------GNPDLCIDEK 411 (467)
Q Consensus 387 ~~~~~~~~~~~l~l~-------~Np~~C~c~~ 411 (467)
.+.....+ +.+++. .|++.|.|..
T Consensus 257 ~~~~l~~L-~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 257 FFSKNQRV-QTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHTTCHHH-HHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHHhCCCC-cEEeccccccccCCCcccccCCc
Confidence 44333333 455665 8888888863
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=3.1e-27 Score=225.18 Aligned_cols=230 Identities=22% Similarity=0.179 Sum_probs=182.2
Q ss_pred EecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEc
Q 012260 126 LFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITL 205 (467)
Q Consensus 126 L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 205 (467)
.+..+..+. .+|..+| ++|++|++++| .+++..+..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 12 ~~c~~~~l~---~ip~~l~----~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (276)
T 2z62_A 12 YQCMELNFY---KIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83 (276)
T ss_dssp EECTTSCCS---SCCSSSC----TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred EEecCCCcc---ccCCCCC----CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEEC
Confidence 344444443 6887774 78999999999 999877779999999999999999998887889999999999999
Q ss_pred cCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCC-ccccccCCCCCCeeeccccCCCC
Q 012260 206 SRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGK-IPESLGHLKSLEFMDLSFNGFGN 284 (467)
Q Consensus 206 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~ 284 (467)
++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++. +|..+.++++|++|++++|++++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 99999988888999999999999999999987777899999999999999999863 68889989999999999988877
Q ss_pred CChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhh
Q 012260 285 FGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEF 364 (467)
Q Consensus 285 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 364 (467)
..+..+..+.+|+.+.+ +|++++|.++ .++...+ ...+|++|++++|++++..+..+
T Consensus 164 -~~~~~~~~l~~L~~l~l--------------------~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 164 -IYCTDLRVLHQMPLLNL--------------------SLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp -ECGGGGHHHHTCTTCCE--------------------EEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTT
T ss_pred -CCHHHhhhhhhccccce--------------------eeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHh
Confidence 33444444444441111 4555566655 3333333 34578888888888876666667
Q ss_pred hCCCCCCEEEccCCcccccCCC
Q 012260 365 GVLEFVGEINLENNNLSGRVPF 386 (467)
Q Consensus 365 ~~l~~L~~L~Ls~N~l~g~ip~ 386 (467)
..+++|+.|++++|++++..|.
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTTT
T ss_pred cccccccEEEccCCcccccCCc
Confidence 7788888888888888877663
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=9.6e-27 Score=221.13 Aligned_cols=184 Identities=26% Similarity=0.255 Sum_probs=116.4
Q ss_pred CCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEec
Q 012260 223 KLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYL 302 (467)
Q Consensus 223 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L 302 (467)
++++|++++|++++..+..|.++++|++|++++|+++...+..|.++++|++|++++|+++. ..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEEC
Confidence 34444444444443333344444455555555554443333334445555555555555554 22334455666666666
Q ss_pred cCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccc
Q 012260 303 SGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSG 382 (467)
Q Consensus 303 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 382 (467)
++|++++..+..|..+++|++|++++|.++ .+|...+..+++|++|+|++|++++..+..+..+++|++|++++|++++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 666666666666677777777777777777 4444332277888888888888887777778888889999999998884
Q ss_pred cCCCC-cccccccCCeeeecCCCCCCcCc
Q 012260 383 RVPFS-AKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 383 ~ip~~-~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
+|.. +..... ++.+++++|||.|+|+
T Consensus 196 -~~~~~~~~l~~-L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 196 -VPEGAFDSLEK-LKMLQLQENPWDCTCN 222 (270)
T ss_dssp -CCTTTTTTCTT-CCEEECCSSCBCCSSS
T ss_pred -CCHHHhccccC-CCEEEecCCCeeCCCc
Confidence 4443 333333 3889999999999997
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.1e-26 Score=234.83 Aligned_cols=231 Identities=23% Similarity=0.289 Sum_probs=106.1
Q ss_pred CCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCC
Q 012260 122 HLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLE 201 (467)
Q Consensus 122 ~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 201 (467)
+|++|++++|.+. .+| .+ +++ ++|++|++++| .+++ +|.. ..+|++|++++|++++ +| .++++++|+
T Consensus 132 ~L~~L~L~~n~l~---~lp-~~-~~l-~~L~~L~l~~N-~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~ 198 (454)
T 1jl5_A 132 LLEYLGVSNNQLE---KLP-EL-QNS-SFLKIIDVDNN-SLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLT 198 (454)
T ss_dssp TCCEEECCSSCCS---SCC-CC-TTC-TTCCEEECCSS-CCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CCCEEECcCCCCC---CCc-cc-CCC-CCCCEEECCCC-cCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCC
Confidence 3444444444433 233 23 444 44444444444 4443 2322 1244444444444433 23 344455555
Q ss_pred EEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccC
Q 012260 202 EITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNG 281 (467)
Q Consensus 202 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 281 (467)
+|++++|++++ +|.. .++|++|++++|.++ .+| .++.+++|++|++++|++++ +|.. +++|++|++++|+
T Consensus 199 ~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 199 AIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNY 268 (454)
T ss_dssp EEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSC
T ss_pred EEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCc
Confidence 55555555443 2211 134455555555544 344 25555555555555555553 3321 2445555555555
Q ss_pred CCCCChhHHhhcCcCCcEEeccCccCCC--CchhHhh-------------cC-CCCcEEeccCCCCCCCCchHHHhcccC
Q 012260 282 FGNFGVPTFLAEMDKLREVYLSGNFLGG--EIPEIWE-------------SL-GGIVGIGLSGTGLVGKIPASMGIHLKK 345 (467)
Q Consensus 282 l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~-------------~l-~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 345 (467)
+++ +|.. +++|++|++++|++++ ..|..+. .+ ++|++|++++|++++ +|. .+++
T Consensus 269 l~~--l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~----~~~~ 338 (454)
T 1jl5_A 269 LTD--LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA----LPPR 338 (454)
T ss_dssp CSC--CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC----CCTT
T ss_pred ccc--cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc----cCCc
Confidence 544 2221 2455555555555553 1221110 11 345555555555552 443 2355
Q ss_pred CCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccc--cCCCCcc
Q 012260 346 LSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSG--RVPFSAK 389 (467)
Q Consensus 346 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~ 389 (467)
|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.
T Consensus 339 L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 339 LERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred CCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 666666666665 2443 34556666666666665 4555443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.8e-28 Score=248.66 Aligned_cols=233 Identities=23% Similarity=0.163 Sum_probs=199.3
Q ss_pred cchhhcCC----CCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhh
Q 012260 166 LGGIIGSF----TNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEE 241 (467)
Q Consensus 166 ~p~~l~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 241 (467)
+|..+..+ ++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|++++|.+++..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence 44444444 489999999999999889999999999999999999997665 899999999999999998543
Q ss_pred hhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhh-cCCC
Q 012260 242 MGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWE-SLGG 320 (467)
Q Consensus 242 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~ 320 (467)
..++|++|++++|.+++..+. .+++|++|++++|.+++ ..|..++.+++|+.|+|++|.+++..|..+. .+++
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 238999999999999976654 45889999999999999 6677889999999999999999998888876 7999
Q ss_pred CcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeee
Q 012260 321 IVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKL 400 (467)
Q Consensus 321 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l 400 (467)
|++|+|++|.+++. |... .+++|++|+|++|++++..| .+..+++|+.|+|++|+++ .+|..+.....+ +.+++
T Consensus 171 L~~L~Ls~N~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L-~~L~l 244 (487)
T 3oja_A 171 LEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNL-EHFDL 244 (487)
T ss_dssp CCEEECTTSCCCEE-ECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTC-CEEEC
T ss_pred ccEEecCCCccccc-cccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCC-CEEEc
Confidence 99999999999944 4433 58999999999999996544 5889999999999999999 478776655554 89999
Q ss_pred cCCCCCCcCcccccC
Q 012260 401 KGNPDLCIDEKFSIG 415 (467)
Q Consensus 401 ~~Np~~C~c~~~~~~ 415 (467)
++|++.|++...++.
T Consensus 245 ~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 245 RGNGFHCGTLRDFFS 259 (487)
T ss_dssp TTCCBCHHHHHHHHT
T ss_pred CCCCCcCcchHHHHH
Confidence 999999998654443
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-26 Score=236.77 Aligned_cols=256 Identities=23% Similarity=0.312 Sum_probs=167.7
Q ss_pred cccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC
Q 012260 110 STLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 110 g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
..+| + |.++++|++|++++|.+. .+|..+ .+|++|++++| .+++ +| .++++++|++|++++|++++
T Consensus 144 ~~lp-~-~~~l~~L~~L~l~~N~l~---~lp~~~-----~~L~~L~L~~n-~l~~-l~-~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 144 EKLP-E-LQNSSFLKIIDVDNNSLK---KLPDLP-----PSLEFIAAGNN-QLEE-LP-ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp SSCC-C-CTTCTTCCEEECCSSCCS---CCCCCC-----TTCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSS-
T ss_pred CCCc-c-cCCCCCCCEEECCCCcCc---ccCCCc-----ccccEEECcCC-cCCc-Cc-cccCCCCCCEEECCCCcCCc-
Confidence 3477 3 599999999999999887 577655 78999999999 8887 66 68999999999999999976
Q ss_pred cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCC
Q 012260 190 IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHL 269 (467)
Q Consensus 190 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 269 (467)
+|... ++|++|++++|.++ .+| .+..+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .
T Consensus 210 l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 210 LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---C
T ss_pred CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---c
Confidence 44332 58888999998888 566 48888888999998888875 4432 3677777777777764 4432 2
Q ss_pred CCCCeeeccccCCCCCC-hhHHh-------------hcC-cCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCC
Q 012260 270 KSLEFMDLSFNGFGNFG-VPTFL-------------AEM-DKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGK 334 (467)
Q Consensus 270 ~~L~~L~Ls~n~l~~~~-~p~~~-------------~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 334 (467)
++|++|++++|+++++. +|..+ ..+ ++|++|++++|++++ +|.. +++|++|++++|+++ .
T Consensus 277 ~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~ 351 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-E 351 (454)
T ss_dssp TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-c
Confidence 45566666666555410 11111 112 578899999999886 4433 589999999999999 6
Q ss_pred CchHHHhcccCCCEEeccCCCCCC--CCchhhhCC-------------CCCCEEEccCCcccc--cCCCCcccccccCCe
Q 012260 335 IPASMGIHLKKLSYLSLDNNKLQG--NVPEEFGVL-------------EFVGEINLENNNLSG--RVPFSAKFSTKVGEK 397 (467)
Q Consensus 335 ip~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~~~ 397 (467)
+|. .+++|++|++++|++++ .+|.++..+ ++|+.|++++|+++| .+|..+ +.
T Consensus 352 lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl-------~~ 420 (454)
T 1jl5_A 352 VPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV-------ED 420 (454)
T ss_dssp CCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------
T ss_pred ccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH-------hh
Confidence 887 36899999999999998 788888776 789999999999986 666542 45
Q ss_pred eeecCCCCCCc
Q 012260 398 LKLKGNPDLCI 408 (467)
Q Consensus 398 l~l~~Np~~C~ 408 (467)
+++.+|.+.|.
T Consensus 421 L~~~~~~~~~~ 431 (454)
T 1jl5_A 421 LRMNSERVVDP 431 (454)
T ss_dssp -----------
T ss_pred eeCcCcccCCc
Confidence 66667665543
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=8e-29 Score=253.32 Aligned_cols=280 Identities=18% Similarity=0.162 Sum_probs=170.0
Q ss_pred CCceEecccccCCCCc--CCCCCCCccccCCccEEEcccCCCcccccchhhc-----CCCCCCEEEeecCCCCCCc----
Q 012260 122 HLRKLFFYKCFTEKQV--PVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIG-----SFTNLRRLVLTGNGVYGGI---- 190 (467)
Q Consensus 122 ~L~~L~L~~~~~~~~~--~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~---- 190 (467)
+|++|+|++|.+...+ .+|..+ ..+ ++|++|++++| .+++..+..+. ..++|++|++++|++++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l-~~~-~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTL-RTL-PTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHT-TSC-TTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHH-ccC-CceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 5777777776654211 344445 555 67777777777 56544333332 2446777777777665532
Q ss_pred ccccCCCCCCCEEEccCCcCCCccccccc-----CCCCCCEEeccCCcCCCC----chhhhhCCCCCCEEEccCCcCCCC
Q 012260 191 PDKVGDLVGLEEITLSRNKLSGGFSFSLD-----KLKKLRILDLSQNQFDGN----VPEEMGNLTNLLKLDLSSNVCSGK 261 (467)
Q Consensus 191 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 261 (467)
+..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44455567777777777776544333332 255777777777777653 455666677777777777766532
Q ss_pred c-----cccccCCCCCCeeeccccCCCCCC---hhHHhhcCcCCcEEeccCccCCCCchhHhhcC-----CCCcEEeccC
Q 012260 262 I-----PESLGHLKSLEFMDLSFNGFGNFG---VPTFLAEMDKLREVYLSGNFLGGEIPEIWESL-----GGIVGIGLSG 328 (467)
Q Consensus 262 ~-----p~~~~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~ 328 (467)
. +..+..+++|++|++++|+++... ++..+..+++|++|++++|.+++..+..+... ++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 222234677777777777766511 45556667777777777777765444444332 5777777777
Q ss_pred CCCCCC----CchHHHhcccCCCEEeccCCCCCCCCchhhhC-----CCCCCEEEccCCcccc----cCCCCcccccccC
Q 012260 329 TGLVGK----IPASMGIHLKKLSYLSLDNNKLQGNVPEEFGV-----LEFVGEINLENNNLSG----RVPFSAKFSTKVG 395 (467)
Q Consensus 329 N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~g----~ip~~~~~~~~~~ 395 (467)
|.+++. ++..+. .+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+.....+
T Consensus 323 n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L- 400 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL- 400 (461)
T ss_dssp SCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC-
T ss_pred CCCchHHHHHHHHHHh-hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc-
Confidence 777654 344444 5677777777777776554444432 5677777777777775 555554444443
Q ss_pred CeeeecCCCCC
Q 012260 396 EKLKLKGNPDL 406 (467)
Q Consensus 396 ~~l~l~~Np~~ 406 (467)
+.+++++|+..
T Consensus 401 ~~L~l~~N~i~ 411 (461)
T 1z7x_W 401 RELDLSNNCLG 411 (461)
T ss_dssp CEEECCSSSCC
T ss_pred cEEECCCCCCC
Confidence 67777777654
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.1e-26 Score=216.78 Aligned_cols=198 Identities=22% Similarity=0.192 Sum_probs=127.1
Q ss_pred EecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEc
Q 012260 126 LFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITL 205 (467)
Q Consensus 126 L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 205 (467)
++++++.+. .+|..+| ++|++|++++| .+++..+..|.++++|++|++++|+++...+..|.++++|++|++
T Consensus 21 l~~~~~~l~---~ip~~~~----~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 21 VDCSSKKLT---AIPSNIP----ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp EECTTSCCS---SCCSCCC----TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred EEccCCCCC---ccCCCCC----CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 344444444 5666553 67788888888 777766667788888888888888887666666677788888888
Q ss_pred cCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCC
Q 012260 206 SRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNF 285 (467)
Q Consensus 206 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 285 (467)
++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-
Confidence 8887776666667777777777777777776666666777777777777777665444455666666666666666655
Q ss_pred ChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCC
Q 012260 286 GVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLV 332 (467)
Q Consensus 286 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 332 (467)
..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 22333445555555555555555444444444444444444444443
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.2e-26 Score=238.87 Aligned_cols=259 Identities=22% Similarity=0.240 Sum_probs=190.5
Q ss_pred ceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCccccc
Q 012260 87 VHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPL 166 (467)
Q Consensus 87 ~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~ 166 (467)
..++.|++++. ....+|..++ ++|++|++++|.+. .+|..+ ++|++|++++| .+++ +
T Consensus 40 ~~l~~L~ls~n----------~L~~lp~~l~---~~L~~L~L~~N~l~---~lp~~l-----~~L~~L~Ls~N-~l~~-l 96 (622)
T 3g06_A 40 NGNAVLNVGES----------GLTTLPDCLP---AHITTLVIPDNNLT---SLPALP-----PELRTLEVSGN-QLTS-L 96 (622)
T ss_dssp HCCCEEECCSS----------CCSCCCSCCC---TTCSEEEECSCCCS---CCCCCC-----TTCCEEEECSC-CCSC-C
T ss_pred CCCcEEEecCC----------CcCccChhhC---CCCcEEEecCCCCC---CCCCcC-----CCCCEEEcCCC-cCCc-C
Confidence 35888898842 3447777662 78999999999887 677643 88999999999 8875 5
Q ss_pred chhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCC
Q 012260 167 GGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLT 246 (467)
Q Consensus 167 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 246 (467)
|. .+++|++|++++|++++. |. .+++|++|++++|++++ +|.. +++|++|++++|++++ +|. .++
T Consensus 97 p~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~ 161 (622)
T 3g06_A 97 PV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPS 161 (622)
T ss_dssp CC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred CC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccC
Confidence 55 688999999999998664 43 56889999999999885 4443 4889999999998885 443 346
Q ss_pred CCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEec
Q 012260 247 NLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGL 326 (467)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 326 (467)
+|+.|++++|.+++ +| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++. +|. .+++|++|++
T Consensus 162 ~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~--l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~L 228 (622)
T 3g06_A 162 ELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS--LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIV 228 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEEC
T ss_pred CCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC--CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEc
Confidence 78888888888874 55 446788888888888876 343 24678888888888774 332 2467888888
Q ss_pred cCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCC
Q 012260 327 SGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 327 s~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~ 406 (467)
++|.++ .+|. .+++|+.|+|++|+++ .+|. .+++|+.|+|++|+|+ .+|..+.....+ +.+++++|++.
T Consensus 229 s~N~L~-~lp~----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l~ 297 (622)
T 3g06_A 229 SGNRLT-SLPV----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLS 297 (622)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCCC
T ss_pred cCCccC-cCCC----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCCC
Confidence 888887 4662 5677888888888887 4454 5567888888888887 777666555444 77888888765
Q ss_pred C
Q 012260 407 C 407 (467)
Q Consensus 407 C 407 (467)
.
T Consensus 298 ~ 298 (622)
T 3g06_A 298 E 298 (622)
T ss_dssp H
T ss_pred C
Confidence 3
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=2e-28 Score=250.32 Aligned_cols=285 Identities=16% Similarity=0.131 Sum_probs=167.6
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccC----CccEEEcccCCCccc----ccchhhcCCCCCCEEEeecCCCCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGS----SLEELVFIDNPSFVG----PLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~----~L~~L~L~~n~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
..+++|++|+|++|.+.. ..+..+...+ + +|++|++++| .++. .++..+.++++|++|++++|.+++.
T Consensus 53 ~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l-~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGD--VGVHCVLQGL-QTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HTCTTCCEEECTTCCCHH--HHHHHHHHTT-CSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HhCCCcCEEeCCCCcCCh--HHHHHHHHHH-hhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 556666666666655432 1111110112 2 4666666666 5552 4456666666666666666666443
Q ss_pred ccccc-----CCCCCCCEEEccCCcCCCcc----cccccCCCCCCEEeccCCcCCCCchhhhh-----CCCCCCEEEccC
Q 012260 190 IPDKV-----GDLVGLEEITLSRNKLSGGF----SFSLDKLKKLRILDLSQNQFDGNVPEEMG-----NLTNLLKLDLSS 255 (467)
Q Consensus 190 ~p~~~-----~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~ 255 (467)
.+..+ ...++|++|++++|.+++.. +..+..+++|++|++++|.++...+..+. ..++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 33222 12445666666666666432 44455566777777777766544333332 245677777777
Q ss_pred CcCCCC----ccccccCCCCCCeeeccccCCCCCCh----hHHhhcCcCCcEEeccCccCCCC----chhHhhcCCCCcE
Q 012260 256 NVCSGK----IPESLGHLKSLEFMDLSFNGFGNFGV----PTFLAEMDKLREVYLSGNFLGGE----IPEIWESLGGIVG 323 (467)
Q Consensus 256 n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~ 323 (467)
|.+++. ++..+..+++|++|++++|.++...+ +..+..+++|++|++++|++++. ++..+..+++|++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 776643 45556667777777777777655111 11222467777777777777753 5666667778888
Q ss_pred EeccCCCCCCCCchHHHh----cccCCCEEeccCCCCCCC----CchhhhCCCCCCEEEccCCcccccCCCCcccc----
Q 012260 324 IGLSGTGLVGKIPASMGI----HLKKLSYLSLDNNKLQGN----VPEEFGVLEFVGEINLENNNLSGRVPFSAKFS---- 391 (467)
Q Consensus 324 L~Ls~N~l~~~ip~~~~~----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~---- 391 (467)
|++++|.+++..+..+.. ..++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+...
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCC
Confidence 888888776444433331 125788888888887755 45666677888888888888875443332210
Q ss_pred cccCCeeeecCCCCC
Q 012260 392 TKVGEKLKLKGNPDL 406 (467)
Q Consensus 392 ~~~~~~l~l~~Np~~ 406 (467)
...++.+++++|...
T Consensus 369 ~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 369 GSVLRVLWLADCDVS 383 (461)
T ss_dssp TCCCCEEECTTSCCC
T ss_pred CCceEEEECCCCCCC
Confidence 123378888888654
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.9e-25 Score=212.39 Aligned_cols=206 Identities=21% Similarity=0.223 Sum_probs=129.5
Q ss_pred CCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEE
Q 012260 172 SFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKL 251 (467)
Q Consensus 172 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 251 (467)
.+++|+.|++++|.+.. + ..++.+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34555555555555432 1 2345555555666665555542 245556666666666666665555555666666666
Q ss_pred EccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCC
Q 012260 252 DLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGL 331 (467)
Q Consensus 252 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 331 (467)
++++|++++..+..+..+++|++|++++|++++ ..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 666666665555556666666666666666665 3344456666777777777777766666667777777777777777
Q ss_pred CCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCccc
Q 012260 332 VGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKF 390 (467)
Q Consensus 332 ~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 390 (467)
++..+..+. .+++|++|++++|.+.+. ++.|+.|+++.|+++|.+|..+..
T Consensus 194 ~~~~~~~~~-~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 194 KSVPDGVFD-RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp SCCCTTTTT-TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CccCHHHHh-CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 754444444 677888888888877644 446778888888888888877543
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.2e-25 Score=211.95 Aligned_cols=209 Identities=23% Similarity=0.258 Sum_probs=164.6
Q ss_pred ccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCC
Q 012260 145 ASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKL 224 (467)
Q Consensus 145 ~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 224 (467)
..+ ++|++|++++| .++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|
T Consensus 38 ~~l-~~L~~L~l~~~-~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NEL-NSIDQIIANNS-DIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHH-TTCCEEECTTS-CCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccc-cceeeeeeCCC-Cccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 556 78888888888 6654 2 3477788888888888888653 367788888888888888887777777888888
Q ss_pred CEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccC
Q 012260 225 RILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSG 304 (467)
Q Consensus 225 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 304 (467)
++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++ ..+..+..+++|++|++++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCC
Confidence 888888888887777777888888888888888887666677888888888888888887 4555667788888888888
Q ss_pred ccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCC
Q 012260 305 NFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLE 368 (467)
Q Consensus 305 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 368 (467)
|++++..+..+..+++|++|++++|.+.+. +++|+.|+++.|+++|.+|.+++.++
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 888887777778888888888888887743 44677788888888888887776654
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=2e-26 Score=225.70 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=162.8
Q ss_pred CCCCCCCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCCCCCCCcccChhhhhcC--CCCceEecccccCC
Q 012260 57 DDLCSSPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSF--KHLRKLFFYKCFTE 134 (467)
Q Consensus 57 ~~C~~~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l--~~L~~L~L~~~~~~ 134 (467)
..|. .|.++.|+. ..++.+++++. .+.+..+..+ ++++.|++++|.+.
T Consensus 34 ~vc~--~W~~~~~~~---------------~~~~~l~l~~~-------------~~~~~~~~~~~~~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 34 GVCK--RWYRLASDE---------------SLWQTLDLTGK-------------NLHPDVTGRLLSQGVIAFRCPRSFMD 83 (336)
T ss_dssp SSCH--HHHHHHTCS---------------TTSSEEECTTC-------------BCCHHHHHHHHHTTCSEEECTTCEEC
T ss_pred HHHH--HHHHHhcCc---------------hhheeeccccc-------------cCCHHHHHhhhhccceEEEcCCcccc
Confidence 4565 699998875 34677888732 1224455777 88899999888776
Q ss_pred CCcCCCCCCCccccCCccEEEcccCCCcccc-cchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCC-cCCC
Q 012260 135 KQVPVPDNIPASFGSSLEELVFIDNPSFVGP-LGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRN-KLSG 212 (467)
Q Consensus 135 ~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~ 212 (467)
+ .+..+ ..+ ++|++|++++| .+++. +|..+.++++|++|++++|.+++..+..++.+++|++|++++| .+++
T Consensus 84 ~---~~~~~-~~~-~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 84 Q---PLAEH-FSP-FRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp S---CCCSC-CCC-BCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred c---cchhh-ccC-CCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence 4 33445 566 78888888888 77765 7777777888888888888777666777777777777777777 4554
Q ss_pred c-ccccccCCCCCCEEeccCC-cCCCC-chhhhhCCC-CCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChh
Q 012260 213 G-FSFSLDKLKKLRILDLSQN-QFDGN-VPEEMGNLT-NLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVP 288 (467)
Q Consensus 213 ~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p 288 (467)
. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++|.+ .++...++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~----------------------~~~~~~l~ 215 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK----------------------NLQKSDLS 215 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG----------------------GSCHHHHH
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc----------------------cCCHHHHH
Confidence 2 4555666666666666666 66543 445555566 666666665521 22211344
Q ss_pred HHhhcCcCCcEEeccCcc-CCCCchhHhhcCCCCcEEeccCCC-CCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhC
Q 012260 289 TFLAEMDKLREVYLSGNF-LGGEIPEIWESLGGIVGIGLSGTG-LVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGV 366 (467)
Q Consensus 289 ~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 366 (467)
..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+. .+++|++|++++| ++...-..+.
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-i~~~~~~~l~- 292 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI-VPDGTLQLLK- 292 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS-SCTTCHHHHH-
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc-cCHHHHHHHH-
Confidence 444555555555555555 444445555555666666666653 2111111233 5666666666666 3322222221
Q ss_pred CCCCCEEEccCCcccccCCCCc
Q 012260 367 LEFVGEINLENNNLSGRVPFSA 388 (467)
Q Consensus 367 l~~L~~L~Ls~N~l~g~ip~~~ 388 (467)
..+..|++++|++++..|...
T Consensus 293 -~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 293 -EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp -HHSTTSEESCCCSCCTTCSSC
T ss_pred -hhCcceEEecccCccccCCcc
Confidence 124455567777776666543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.6e-24 Score=207.89 Aligned_cols=202 Identities=21% Similarity=0.190 Sum_probs=128.1
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
.+++++++++++++.+. .+|..+| +++++|++++| .+++..|..|.++++|++|++++|.+++..+. +.+
T Consensus 7 ~~l~~l~~l~~~~~~l~---~ip~~~~----~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l 76 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT---ALPPDLP----KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTL 76 (290)
T ss_dssp ECSTTCCEEECTTSCCS---SCCSCCC----TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCC
T ss_pred cccCCccEEECCCCCCC---cCCCCCC----CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCC
Confidence 67778888888887776 6777664 67788888888 78777777788888888888888877554332 566
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------- 147 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-------- 147 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc--------
Confidence 67777777777666 445555566666666666666665444555555555555555555554434444444
Q ss_pred cccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCC
Q 012260 278 SFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 278 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..++ ..++|+.|+|++|.+.
T Consensus 148 -----------------~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 148 -----------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -----------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred -----------------cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCcc
Confidence 45555555555555444444455556666666666665 5565555 5556666666666665
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.4e-26 Score=231.56 Aligned_cols=235 Identities=19% Similarity=0.180 Sum_probs=122.9
Q ss_pred CCccEEEcccCCCcccccc----hhhcCCCCCCEEEeecCC---CCCCccccc-------CCCCCCCEEEccCCcCCC--
Q 012260 149 SSLEELVFIDNPSFVGPLG----GIIGSFTNLRRLVLTGNG---VYGGIPDKV-------GDLVGLEEITLSRNKLSG-- 212 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~Ls~n~l~~-- 212 (467)
++|++|++++| .+.+..+ ..+.++++|++|+|++|. +++.+|..+ ..+++|++|+|++|.++.
T Consensus 32 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 44555555554 4444322 223445555555555532 222333332 455555555555555554
Q ss_pred --cccccccCCCCCCEEeccCCcCCCCchhhhh----CC---------CCCCEEEccCCcCC-CCcc---ccccCCCCCC
Q 012260 213 --GFSFSLDKLKKLRILDLSQNQFDGNVPEEMG----NL---------TNLLKLDLSSNVCS-GKIP---ESLGHLKSLE 273 (467)
Q Consensus 213 --~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~ 273 (467)
.+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++ +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 2444555555666666666655433222222 22 56666666666654 2233 3444555666
Q ss_pred eeeccccCCCCCC----hhHHhhcCcCCcEEeccCccCC----CCchhHhhcCCCCcEEeccCCCCCCC----CchHHH-
Q 012260 274 FMDLSFNGFGNFG----VPTFLAEMDKLREVYLSGNFLG----GEIPEIWESLGGIVGIGLSGTGLVGK----IPASMG- 340 (467)
Q Consensus 274 ~L~Ls~n~l~~~~----~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~- 340 (467)
+|++++|+++... .+..+..+++|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 6666666555210 1224455666666666666664 34555566666666666666666543 333332
Q ss_pred hcccCCCEEeccCCCCCC----CCchhh-hCCCCCCEEEccCCcccccC
Q 012260 341 IHLKKLSYLSLDNNKLQG----NVPEEF-GVLEFVGEINLENNNLSGRV 384 (467)
Q Consensus 341 ~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~g~i 384 (467)
..+++|++|+|++|++++ .+|..+ .++++|++|++++|++++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 025666666666666665 355555 44666777777777666544
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=3.4e-25 Score=214.75 Aligned_cols=224 Identities=21% Similarity=0.237 Sum_probs=175.7
Q ss_pred CccEEEcccCCCccccc-ch--hhcCCCCCCEEEeecCCCCCCccccc--CCCCCCCEEEccCCcCCCccc----ccccC
Q 012260 150 SLEELVFIDNPSFVGPL-GG--IIGSFTNLRRLVLTGNGVYGGIPDKV--GDLVGLEEITLSRNKLSGGFS----FSLDK 220 (467)
Q Consensus 150 ~L~~L~L~~n~~l~~~~-p~--~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~ 220 (467)
.++.+.+.++ .++... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4677777776 554321 11 12235779999999999988888887 889999999999999987554 34557
Q ss_pred CCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCC--cc--ccccCCCCCCeeeccccCCCCCChhH----Hhh
Q 012260 221 LKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGK--IP--ESLGHLKSLEFMDLSFNGFGNFGVPT----FLA 292 (467)
Q Consensus 221 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p--~~~~~l~~L~~L~Ls~n~l~~~~~p~----~~~ 292 (467)
+++|++|++++|++++..+..+.++++|++|++++|++.+. ++ ..+..+++|++|++++|+++. ++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hHHHHHHHHh
Confidence 88999999999999888888889999999999999987653 22 234678899999999999875 343 357
Q ss_pred cCcCCcEEeccCccCCCCchhHhhcC---CCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCC
Q 012260 293 EMDKLREVYLSGNFLGGEIPEIWESL---GGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEF 369 (467)
Q Consensus 293 ~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 369 (467)
.+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 78899999999999998877766665 68999999999998 7787653 7899999999999864 33 577788
Q ss_pred CCEEEccCCcccc
Q 012260 370 VGEINLENNNLSG 382 (467)
Q Consensus 370 L~~L~Ls~N~l~g 382 (467)
|+.|++++|+++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999998863
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=7.1e-25 Score=205.89 Aligned_cols=184 Identities=22% Similarity=0.220 Sum_probs=97.0
Q ss_pred CCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccc
Q 012260 200 LEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSF 279 (467)
Q Consensus 200 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 279 (467)
.++++++++.++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-- 90 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL-- 90 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC--
Confidence 445555555555 3333332 35555555555555544445555555555555555555444444444444555554
Q ss_pred cCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCC
Q 012260 280 NGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 280 n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
++|++++..+..|..+++|++|+|++|+++ .+|...+..+++|++|+|++|++++.
T Consensus 91 -----------------------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 91 -----------------------ANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp -----------------------TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred -----------------------CCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCcc
Confidence 444444444444455555555555555555 33322222556666666666666655
Q ss_pred CchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCc-Ccccc
Q 012260 360 VPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCI-DEKFS 413 (467)
Q Consensus 360 ~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~-c~~~~ 413 (467)
.+..+..+++|++|+|++|++++..|..+.....+ +.+++++|+|.|+ |+..+
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~~~~~~~ 200 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL-QTITLFGNQFDCSRCEILY 200 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSCCBCTTSTTHHH
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC-CEEEeeCCceeCCccccHH
Confidence 55556666666666666666664333333333333 5666667777666 55444
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-23 Score=221.83 Aligned_cols=246 Identities=26% Similarity=0.257 Sum_probs=204.7
Q ss_pred cceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccc
Q 012260 86 TVHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGP 165 (467)
Q Consensus 86 ~~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~ 165 (467)
..+++.|+|++. ....+|+ .+++|++|+|++|.+. .+|..+ ++|++|++++| .+++
T Consensus 60 ~~~L~~L~L~~N----------~l~~lp~----~l~~L~~L~Ls~N~l~---~lp~~l-----~~L~~L~Ls~N-~l~~- 115 (622)
T 3g06_A 60 PAHITTLVIPDN----------NLTSLPA----LPPELRTLEVSGNQLT---SLPVLP-----PGLLELSIFSN-PLTH- 115 (622)
T ss_dssp CTTCSEEEECSC----------CCSCCCC----CCTTCCEEEECSCCCS---CCCCCC-----TTCCEEEECSC-CCCC-
T ss_pred CCCCcEEEecCC----------CCCCCCC----cCCCCCEEEcCCCcCC---cCCCCC-----CCCCEEECcCC-cCCC-
Confidence 357889999842 3445665 5789999999999887 677644 89999999999 8887
Q ss_pred cchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCC
Q 012260 166 LGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNL 245 (467)
Q Consensus 166 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 245 (467)
+|. .+++|++|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|++++|.+++ +| ..+
T Consensus 116 l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~ 180 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLP 180 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccC
Confidence 444 57899999999999966 5543 48999999999999853 43 35789999999999995 55 557
Q ss_pred CCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEe
Q 012260 246 TNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIG 325 (467)
Q Consensus 246 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 325 (467)
++|+.|++++|++++ +|.. +++|+.|++++|.++. +|. .+++|+.|++++|++++ +| ..+++|++|+
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~--l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~ 247 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS--LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELM 247 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS--CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEE
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc--cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEE
Confidence 899999999999985 5543 4789999999999987 443 35889999999999996 44 5578999999
Q ss_pred ccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcc
Q 012260 326 LSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAK 389 (467)
Q Consensus 326 Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 389 (467)
+++|.++ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+.
T Consensus 248 Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 248 VSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 9999999 7876 4789999999999999 7788999999999999999999988876543
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=7.8e-26 Score=226.04 Aligned_cols=247 Identities=17% Similarity=0.209 Sum_probs=203.1
Q ss_pred ccChhhhhcCCCCceEecccccCCCCc--CCCCCCCccccCCccEEEcccC--CCcccccchhh-------cCCCCCCEE
Q 012260 111 TLNPLIFTSFKHLRKLFFYKCFTEKQV--PVPDNIPASFGSSLEELVFIDN--PSFVGPLGGII-------GSFTNLRRL 179 (467)
Q Consensus 111 ~l~~~~f~~l~~L~~L~L~~~~~~~~~--~ip~~l~~~l~~~L~~L~L~~n--~~l~~~~p~~l-------~~l~~L~~L 179 (467)
.++..+ ..+++|++|+|++|.+.... .++..+ ..+ ++|++|+|++| ..+++.+|..+ .++++|++|
T Consensus 23 ~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 23 SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENI-ASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTT-TTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHH-HhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 355555 88999999999999876411 133445 667 89999999996 25666777665 789999999
Q ss_pred EeecCCCCC----CcccccCCCCCCCEEEccCCcCCCccccccc----CC---------CCCCEEeccCCcCC-CCch--
Q 012260 180 VLTGNGVYG----GIPDKVGDLVGLEEITLSRNKLSGGFSFSLD----KL---------KKLRILDLSQNQFD-GNVP-- 239 (467)
Q Consensus 180 ~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~l~-~~~p-- 239 (467)
+|++|.+.+ .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++ +.++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999999987 4788889999999999999999754444443 34 89999999999998 4455
Q ss_pred -hhhhCCCCCCEEEccCCcCCC-----CccccccCCCCCCeeeccccCCC----CCChhHHhhcCcCCcEEeccCccCCC
Q 012260 240 -EEMGNLTNLLKLDLSSNVCSG-----KIPESLGHLKSLEFMDLSFNGFG----NFGVPTFLAEMDKLREVYLSGNFLGG 309 (467)
Q Consensus 240 -~~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~~p~~~~~l~~L~~L~L~~n~l~~ 309 (467)
..+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ . .+|..+..+++|++|+|++|.+++
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCch
Confidence 467789999999999999972 34448889999999999999996 4 578888999999999999999987
Q ss_pred C----chhHhhc--CCCCcEEeccCCCCCC----CCchHHHhcccCCCEEeccCCCCCCCCc
Q 012260 310 E----IPEIWES--LGGIVGIGLSGTGLVG----KIPASMGIHLKKLSYLSLDNNKLQGNVP 361 (467)
Q Consensus 310 ~----~p~~~~~--l~~L~~L~Ls~N~l~~----~ip~~~~~~l~~L~~L~Ls~N~l~~~~p 361 (467)
. ++..+.. +++|++|+|++|.+++ .+|..+...+++|++|++++|++++..+
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5 5666644 8999999999999996 4888885478999999999999998774
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=5.9e-24 Score=205.83 Aligned_cols=222 Identities=20% Similarity=0.259 Sum_probs=116.8
Q ss_pred CCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEE
Q 012260 173 FTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLD 252 (467)
Q Consensus 173 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 252 (467)
+++|++|++++|.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. + .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 4444555555554432 22 34445555555555555543322 45555555555555555432 2 355555555555
Q ss_pred ccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCC
Q 012260 253 LSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLV 332 (467)
Q Consensus 253 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 332 (467)
+++|++++. + .+..+++|++|++++|++++ ++. +..+++|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 555555532 2 25555556666666665555 222 4556666666666666654333 556666666666666666
Q ss_pred CCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccc-----------cccCCeeeec
Q 012260 333 GKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFS-----------TKVGEKLKLK 401 (467)
Q Consensus 333 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~-----------~~~~~~l~l~ 401 (467)
+ ++. +. .+++|++|+|++|++++..+ +..+++|+.|++++|++++ .|..+... .......+++
T Consensus 187 ~-~~~-l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~is 260 (308)
T 1h6u_A 187 D-ISP-LA-SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPVFYNNNLVVPNVVKGPSGAPIAPATIS 260 (308)
T ss_dssp C-CGG-GG-GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCEECCSEEEEECCCBCTTSCBCCCSEEG
T ss_pred c-Chh-hc-CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCeeecccEeccceeECCCCCCCCCCccc
Confidence 3 332 33 56667777777776664432 5666667777777776663 22211100 0011234666
Q ss_pred CCCCCCcCcccc
Q 012260 402 GNPDLCIDEKFS 413 (467)
Q Consensus 402 ~Np~~C~c~~~~ 413 (467)
.|.+.|.+...|
T Consensus 261 ~~g~y~~~~~~w 272 (308)
T 1h6u_A 261 DNGTYASPNLTW 272 (308)
T ss_dssp GGCEEETTEEEE
T ss_pred cCCEEeCCceeE
Confidence 776667666555
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.2e-25 Score=220.87 Aligned_cols=252 Identities=20% Similarity=0.192 Sum_probs=126.9
Q ss_pred EecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccc----hhhcCCC-CCCEEEeecCCCCCCcccccCCC---
Q 012260 126 LFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLG----GIIGSFT-NLRRLVLTGNGVYGGIPDKVGDL--- 197 (467)
Q Consensus 126 L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l--- 197 (467)
++++.|.+.+ .+|..+ ... ++|++|++++| .+++..+ ..+.+++ +|++|+|++|++++..+..+..+
T Consensus 3 ~~ls~n~~~~--~~~~~~-~~~-~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSN--PVEEFT-SIP-HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCCCTTCC--HHHHHH-TSC-TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred cccccccchH--HHHHHH-hCC-CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 3444554443 333332 222 44666666666 5555444 4555555 56666666666655545444443
Q ss_pred --CCCCEEEccCCcCCCccccccc----CC-CCCCEEeccCCcCCCCchhhhh----C-CCCCCEEEccCCcCCCCc---
Q 012260 198 --VGLEEITLSRNKLSGGFSFSLD----KL-KKLRILDLSQNQFDGNVPEEMG----N-LTNLLKLDLSSNVCSGKI--- 262 (467)
Q Consensus 198 --~~L~~L~Ls~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~L~~n~l~~~~--- 262 (467)
++|++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+. . .++|++|++++|.+++..
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 5666666666666554444322 22 5666666666666544443332 2 245666666666655322
Q ss_pred -cccccCCC-CCCeeeccccCCCCCChhHH----hhcC-cCCcEEeccCccCCCC----chhHhhc-CCCCcEEeccCCC
Q 012260 263 -PESLGHLK-SLEFMDLSFNGFGNFGVPTF----LAEM-DKLREVYLSGNFLGGE----IPEIWES-LGGIVGIGLSGTG 330 (467)
Q Consensus 263 -p~~~~~l~-~L~~L~Ls~n~l~~~~~p~~----~~~l-~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~ 330 (467)
+..+..++ +|++|++++|++++ ..+.. +... ++|++|+|++|++++. ++..+.. .++|++|+|++|.
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHhcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 22233333 56666666666654 22222 2223 3566666666665542 3333433 2356666666666
Q ss_pred CCCCCchHHH---hcccCCCEEeccCCCCCCCCch-------hhhCCCCCCEEEccCCccccc
Q 012260 331 LVGKIPASMG---IHLKKLSYLSLDNNKLQGNVPE-------EFGVLEFVGEINLENNNLSGR 383 (467)
Q Consensus 331 l~~~ip~~~~---~~l~~L~~L~Ls~N~l~~~~p~-------~~~~l~~L~~L~Ls~N~l~g~ 383 (467)
+++..+..+. ..+++|++|+|++|++.+..+. .+..+++|+.||+++|++.+.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 6543332221 1345566666666654433222 334455566666666665544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.1e-24 Score=201.11 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=131.7
Q ss_pred CCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCC-CCCCcccccCCCCCCCEEEccC-CcCCCccc
Q 012260 138 PVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNG-VYGGIPDKVGDLVGLEEITLSR-NKLSGGFS 215 (467)
Q Consensus 138 ~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p 215 (467)
.+|. +| ++|++|++++| .+++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+
T Consensus 25 ~ip~-~~----~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 25 RIPS-LP----PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCCC-CC----TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccCC-CC----CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 5665 53 57788888888 7777666678888888888888886 7665566777888888888887 78876666
Q ss_pred ccccCCCCCCEEeccCCcCCCCchhhhhCCCCCC---EEEccCC-cCCCCccccccCCCCCC-eeeccccCCCCCChhHH
Q 012260 216 FSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLL---KLDLSSN-VCSGKIPESLGHLKSLE-FMDLSFNGFGNFGVPTF 290 (467)
Q Consensus 216 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~~p~~ 290 (467)
..|.++++|++|++++|++++ +|. +..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++. +|..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~ 174 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGY 174 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHh
Confidence 677778888888888887775 554 66666666 7777777 66655455566666666 66666666654 3332
Q ss_pred hhcCcCCcEEeccCcc-CCCCchhHhhcC-CCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCC
Q 012260 291 LAEMDKLREVYLSGNF-LGGEIPEIWESL-GGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNN 354 (467)
Q Consensus 291 ~~~l~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N 354 (467)
....++|+.|++++|+ +++..+..|..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 2222556666666663 554444455555 55555555555555 34432 2345555555443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.3e-25 Score=222.55 Aligned_cols=254 Identities=19% Similarity=0.139 Sum_probs=148.8
Q ss_pred EEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcc----cccCCCC-CCCEEEccCCcCCCcccccccCC-----C
Q 012260 153 ELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIP----DKVGDLV-GLEEITLSRNKLSGGFSFSLDKL-----K 222 (467)
Q Consensus 153 ~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~ 222 (467)
+++++.| .++|.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3556666 6777666666666667777777777765555 5566666 67777777777766655555553 6
Q ss_pred CCCEEeccCCcCCCCchhhhh----CC-CCCCEEEccCCcCCCCccccc----cC-CCCCCeeeccccCCCCCC---hhH
Q 012260 223 KLRILDLSQNQFDGNVPEEMG----NL-TNLLKLDLSSNVCSGKIPESL----GH-LKSLEFMDLSFNGFGNFG---VPT 289 (467)
Q Consensus 223 ~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~Ls~n~l~~~~---~p~ 289 (467)
+|++|++++|++++..+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|+++... ++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 777777777777655554333 33 677777777777665444332 22 246777777777766411 223
Q ss_pred HhhcCc-CCcEEeccCccCCCCchhHhh----cC-CCCcEEeccCCCCCCC----CchHHHhcccCCCEEeccCCCCCCC
Q 012260 290 FLAEMD-KLREVYLSGNFLGGEIPEIWE----SL-GGIVGIGLSGTGLVGK----IPASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 290 ~~~~l~-~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
.+...+ +|++|+|++|++++..+..+. .. ++|++|+|++|.+++. ++..+....++|++|+|++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 677777777777665554433 23 4777777777777642 3444431234677777777777654
Q ss_pred Cch----hhhCCCCCCEEEccCCcccccCC-------CCcccccccCCeeeecCCCCCCc
Q 012260 360 VPE----EFGVLEFVGEINLENNNLSGRVP-------FSAKFSTKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 360 ~p~----~~~~l~~L~~L~Ls~N~l~g~ip-------~~~~~~~~~~~~l~l~~Np~~C~ 408 (467)
.+. .+..+++|+.|++++|.+.+..+ ..+.....+ +.+++++|+....
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L-~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI-ILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE-EEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce-EEEecCCCcCCCc
Confidence 442 23455667777777776442211 122222222 5667777765443
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.2e-24 Score=212.96 Aligned_cols=247 Identities=17% Similarity=0.173 Sum_probs=204.7
Q ss_pred CCccEEEcccCCCcccccchhhcCC--CCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCc-ccccccCCCCCC
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSF--TNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGG-FSFSLDKLKKLR 225 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~ 225 (467)
..++.++++++ .+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 45789999998 766 4566667 8999999999999877665 56799999999999999866 788899999999
Q ss_pred EEeccCCcCCCCchhhhhCCCCCCEEEccCC-cCCCC-ccccccCCCCCCeeecccc-CCCCCChhHHhhcCc-CCcEEe
Q 012260 226 ILDLSQNQFDGNVPEEMGNLTNLLKLDLSSN-VCSGK-IPESLGHLKSLEFMDLSFN-GFGNFGVPTFLAEMD-KLREVY 301 (467)
Q Consensus 226 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~-~L~~L~ 301 (467)
+|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++..++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999999888999999999999999999 67753 6777888999999999999 888733688889999 999999
Q ss_pred ccCc--cCC-CCchhHhhcCCCCcEEeccCCC-CCCCCchHHHhcccCCCEEeccCCC-CCCCCchhhhCCCCCCEEEcc
Q 012260 302 LSGN--FLG-GEIPEIWESLGGIVGIGLSGTG-LVGKIPASMGIHLKKLSYLSLDNNK-LQGNVPEEFGVLEFVGEINLE 376 (467)
Q Consensus 302 L~~n--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls 376 (467)
+++| .++ +.++..+..+++|++|++++|. +++..+..+. .+++|++|++++|. ++......+..+++|+.|+++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 9999 565 5677888899999999999999 7777777777 89999999999996 322222368889999999999
Q ss_pred CCcccccCCC-CcccccccCCeeeecCCCCC
Q 012260 377 NNNLSGRVPF-SAKFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 377 ~N~l~g~ip~-~~~~~~~~~~~l~l~~Np~~ 406 (467)
+| ++. .+.........+++++|...
T Consensus 281 ~~-----i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 281 GI-----VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TS-----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred Cc-----cCHHHHHHHHhhCcceEEecccCc
Confidence 99 333 23333232478888887754
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=209.19 Aligned_cols=226 Identities=19% Similarity=0.152 Sum_probs=182.0
Q ss_pred CCCCCEEEeecCCCCCCccc---ccCCCCCCCEEEccCCcCCCcccccc--cCCCCCCEEeccCCcCCCCch----hhhh
Q 012260 173 FTNLRRLVLTGNGVYGGIPD---KVGDLVGLEEITLSRNKLSGGFSFSL--DKLKKLRILDLSQNQFDGNVP----EEMG 243 (467)
Q Consensus 173 l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~ 243 (467)
...++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34588899988877532111 12245679999999999999999888 899999999999999997554 4456
Q ss_pred CCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCC---CChhHHhhcCcCCcEEeccCccCCCCchh----Hhh
Q 012260 244 NLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGN---FGVPTFLAEMDKLREVYLSGNFLGGEIPE----IWE 316 (467)
Q Consensus 244 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~ 316 (467)
.+++|++|++++|++++..+..++.+++|++|++++|++.+ +..+..+..+++|++|+|++|+++. ++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 79999999999999998888999999999999999999865 1112234678999999999999973 333 357
Q ss_pred cCCCCcEEeccCCCCCCCCchHHHhcc---cCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccc
Q 012260 317 SLGGIVGIGLSGTGLVGKIPASMGIHL---KKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTK 393 (467)
Q Consensus 317 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 393 (467)
.+++|++|+|++|++++.+|..+. .+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++ +|. ......
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCC
Confidence 889999999999999988787766 55 69999999999999 6777664 799999999999995 343 223333
Q ss_pred cCCeeeecCCCCC
Q 012260 394 VGEKLKLKGNPDL 406 (467)
Q Consensus 394 ~~~~l~l~~Np~~ 406 (467)
+ +.+++++|++.
T Consensus 296 L-~~L~L~~N~l~ 307 (310)
T 4glp_A 296 V-DNLTLDGNPFL 307 (310)
T ss_dssp C-SCEECSSTTTS
T ss_pred c-cEEECcCCCCC
Confidence 3 89999999975
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=7.6e-24 Score=197.28 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=100.8
Q ss_pred CCCEEEeecCCCCCCcccccCCCCCCCEEEccCCc-CCCcccccccCCCCCCEEeccC-CcCCCCchhhhhCCCCCCEEE
Q 012260 175 NLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNK-LSGGFSFSLDKLKKLRILDLSQ-NQFDGNVPEEMGNLTNLLKLD 252 (467)
Q Consensus 175 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 252 (467)
+|++|++++|++++..+..|+++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 66777777777766555566667777777777775 6655555666666666666666 666654445566666666666
Q ss_pred ccCCcCCCCccccccCCCCCC---eeecccc-CCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCc-EEecc
Q 012260 253 LSSNVCSGKIPESLGHLKSLE---FMDLSFN-GFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIV-GIGLS 327 (467)
Q Consensus 253 L~~n~l~~~~p~~~~~l~~L~---~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls 327 (467)
+++|++++ +|. +..+++|+ +|++++| +++. ..+..|..+++|+ +|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~-------------------------i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS-------------------------IPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE-------------------------ECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhh-------------------------cCcccccchhcceeEEEcC
Confidence 66666653 443 55555554 5555555 4444 3333444444455 55555
Q ss_pred CCCCCCCCchHHHhcccCCCEEeccCCC-CCCCCchhhhCC-CCCCEEEccCCccc
Q 012260 328 GTGLVGKIPASMGIHLKKLSYLSLDNNK-LQGNVPEEFGVL-EFVGEINLENNNLS 381 (467)
Q Consensus 328 ~N~l~~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 381 (467)
+|+++ .+|...+ ..++|++|++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 165 ~n~l~-~i~~~~~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 165 NNGFT-SVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp SCCCC-EECTTTT-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCc-ccCHhhc-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 55554 4444433 22455555555553 554444445555 55555555555555
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.5e-23 Score=191.67 Aligned_cols=175 Identities=23% Similarity=0.223 Sum_probs=114.7
Q ss_pred eEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEE
Q 012260 125 KLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEIT 204 (467)
Q Consensus 125 ~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 204 (467)
+++++++.+. .+|..+| +++++|++++| .+.+..+..|.++++|++|++++|++++..+..|.++++|++|+
T Consensus 18 ~l~~~~~~l~---~~p~~~~----~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 18 EVDCQGKSLD---SVPSGIP----ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp EEECTTCCCS---SCCSCCC----TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEecCCCCcc---ccCCCCC----CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 4444444444 5666653 67788888888 77777777777778888888888877777777777777777777
Q ss_pred ccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCC
Q 012260 205 LSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGN 284 (467)
Q Consensus 205 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 284 (467)
+++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77777776666666777777777777777775555556666667777776666665544455556666666666665555
Q ss_pred CChhHHhhcCcCCcEEeccCccCC
Q 012260 285 FGVPTFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 285 ~~~p~~~~~l~~L~~L~L~~n~l~ 308 (467)
..+..+..+++|+.|++++|.+.
T Consensus 170 -~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 -VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -CCTTTTTTCTTCCEEECCSCCBC
T ss_pred -cCHHHHhCCCCCCEEEeeCCcee
Confidence 23334444555555555555544
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.90 E-value=3.9e-24 Score=196.74 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=137.1
Q ss_pred CEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccC
Q 012260 249 LKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSG 328 (467)
Q Consensus 249 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (467)
+.++++++.++ .+|..+. +++++|++++|++++ ..+..+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 35566666655 4454443 566677777777665 3334566677777777777777777777788888888888888
Q ss_pred CCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCc
Q 012260 329 TGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 329 N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~ 408 (467)
|+++ .+|...+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+.....+ +.+++++|||.|+
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI-QTMHLAQNPFICD 167 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCEECS
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC-CEEEeCCCCcCCC
Confidence 8888 6666554478899999999999998888889999999999999999985555444444444 8999999999999
Q ss_pred CcccccCCCCC--CCCCCcccCCCCCCCccccccccc
Q 012260 409 DEKFSIGKNAS--GSIGQLKLCKKPDNPKAAMFSDAT 443 (467)
Q Consensus 409 c~~~~~~~~~~--~~~~~~~~C~~p~~~~g~~~~d~~ 443 (467)
|++.|+.++.. ........|+.|...+|..+.+..
T Consensus 168 c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~ 204 (220)
T 2v9t_B 168 CHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIK 204 (220)
T ss_dssp GGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSC
T ss_pred CccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCC
Confidence 99988765321 112234689999999996555443
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.90 E-value=1e-23 Score=219.53 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=97.5
Q ss_pred CCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEcc
Q 012260 175 NLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLS 254 (467)
Q Consensus 175 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 254 (467)
+|++|++++|++++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444433 33322 134444444444444 233 223444445554444443 333 332 45555555
Q ss_pred CCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCC
Q 012260 255 SNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGK 334 (467)
Q Consensus 255 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 334 (467)
+|++++ +|. .+++|++|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+|+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 555443 333 34445555555555544 222 34455555555555553 333 32 45555555555555 4
Q ss_pred CchHHHhcccCC-------CEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCccccccc------CCeeeec
Q 012260 335 IPASMGIHLKKL-------SYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKV------GEKLKLK 401 (467)
Q Consensus 335 ip~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~------~~~l~l~ 401 (467)
+|. +. . +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+...... ...++++
T Consensus 195 lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~ 269 (571)
T 3cvr_A 195 LPA-VP-V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269 (571)
T ss_dssp CCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC-
T ss_pred hhh-HH-H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeec
Confidence 444 22 1 34 55666666555 345555555556666666666655555443322110 0122232
Q ss_pred -------CCCCCCcCcccccCCCC
Q 012260 402 -------GNPDLCIDEKFSIGKNA 418 (467)
Q Consensus 402 -------~Np~~C~c~~~~~~~~~ 418 (467)
.|| .|+|...|+.+..
T Consensus 270 ~~~~~~~~~p-~~~~~~~Wl~~~~ 292 (571)
T 3cvr_A 270 DGQQNTLHRP-LADAVTAWFPENK 292 (571)
T ss_dssp ---------C-CSHHHHTTCC---
T ss_pred cccccccccc-chhhHHHHhhhhc
Confidence 356 8999999987644
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.3e-22 Score=196.29 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=108.5
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
.++++|++|++++|.+. .+| .+ ..+ ++|++|++++| .+++..+ +.++++|++|++++|++++. + .+..+
T Consensus 38 ~~l~~L~~L~l~~~~i~---~l~-~~-~~l-~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l 106 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT---TIE-GV-QYL-NNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGL 106 (308)
T ss_dssp HHHHTCCEEECTTSCCC---CCT-TG-GGC-TTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTC
T ss_pred HHcCCcCEEEeeCCCcc---Cch-hh-hcc-CCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCC
Confidence 45566666666666554 344 34 555 66666666666 5555333 66666666666666666442 2 45566
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
++|++|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++
T Consensus 107 ~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 180 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180 (308)
T ss_dssp TTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence 6666666666666543 2 25566666666666666654322 5556666666666666553322 555566666666
Q ss_pred cccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCC
Q 012260 278 SFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLV 332 (467)
Q Consensus 278 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 332 (467)
++|++++ ++. +..+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 181 ~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCccCc--Chh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 6665555 222 4555555555555555554332 455555555555555554
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=8.3e-23 Score=201.38 Aligned_cols=240 Identities=19% Similarity=0.172 Sum_probs=171.4
Q ss_pred eEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcc-cccCCCCCCCE-
Q 012260 125 KLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIP-DKVGDLVGLEE- 202 (467)
Q Consensus 125 ~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~- 202 (467)
+++.+++.++ .||..+| +++++|+|++| .++...+..|.++++|++|+|++|++.+.+| ..|.+++++++
T Consensus 13 ~v~C~~~~Lt---~iP~~l~----~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 13 VFLCQESKVT---EIPSDLP----RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp EEEEESTTCC---SCCTTCC----TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred EEEecCCCCC---ccCcCcC----CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 4455555555 6777764 67888888888 8876545578888888888888888866654 46778887765
Q ss_pred EEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccC-CcCCCCccccccCCC-CCCeeecccc
Q 012260 203 ITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSS-NVCSGKIPESLGHLK-SLEFMDLSFN 280 (467)
Q Consensus 203 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~-~L~~L~Ls~n 280 (467)
+.++.|+++...|..|.++++|++|++++|++++..+..+....++..+++.+ +++....+..|..+. .++.|++++|
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 56667888877778888888888888888888866666666667777888865 455544444555553 5778888888
Q ss_pred CCCCCChhHHhhcCcCCcEEeccC-ccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCC
Q 012260 281 GFGNFGVPTFLAEMDKLREVYLSG-NFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 281 ~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
+++. ++.......+|+.|++.+ |.++...+..|..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.--..
T Consensus 165 ~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 165 GIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTYNLKK 238 (350)
T ss_dssp CCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCTTCCC
T ss_pred cccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCCCcCc
Confidence 8876 455444566788888874 5666555566788888888888888888 67764 346677777666554446
Q ss_pred CchhhhCCCCCCEEEccCCc
Q 012260 360 VPEEFGVLEFVGEINLENNN 379 (467)
Q Consensus 360 ~p~~~~~l~~L~~L~Ls~N~ 379 (467)
+| .+..+++|+.++++++.
T Consensus 239 lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 239 LP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CC-CTTTCCSCCEEECSCHH
T ss_pred CC-CchhCcChhhCcCCCCc
Confidence 66 46778888888887643
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=192.44 Aligned_cols=189 Identities=21% Similarity=0.212 Sum_probs=141.4
Q ss_pred CEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccC
Q 012260 249 LKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSG 328 (467)
Q Consensus 249 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (467)
+.+++++|.++ .+|..+. +.+++|++++|++++...+..+..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46666666665 3555443 34567777777777622234467788888888888888877777888888888888988
Q ss_pred CCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCc
Q 012260 329 TGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 329 N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~ 408 (467)
|++++..+..+. .+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+.....+ +.+++++|||.|+
T Consensus 91 N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL-STLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGT-TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC-CEEECCSCCEECS
T ss_pred CccCccCHhHhc-CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC-CEEEecCcCCcCC
Confidence 888855555555 88999999999999998888889999999999999999997777776655554 8999999999999
Q ss_pred CcccccCCCCC--CCCCCcccCCCCCCCcccccccc
Q 012260 409 DEKFSIGKNAS--GSIGQLKLCKKPDNPKAAMFSDA 442 (467)
Q Consensus 409 c~~~~~~~~~~--~~~~~~~~C~~p~~~~g~~~~d~ 442 (467)
|++.|+.++.. ........|..|...+|....+.
T Consensus 169 c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l 204 (220)
T 2v70_A 169 CYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDV 204 (220)
T ss_dssp GGGHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGS
T ss_pred CchHHHHHHHHhcCccccCCccCCChHHCCCChhhC
Confidence 99888765321 11233358999999999555443
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.89 E-value=8.5e-24 Score=209.36 Aligned_cols=217 Identities=21% Similarity=0.198 Sum_probs=118.4
Q ss_pred CEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhh-CCCCCCEEEccCCcCCCCccccccCCCCCCeeeccc
Q 012260 201 EEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMG-NLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSF 279 (467)
Q Consensus 201 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 279 (467)
+.++++++.++. +|..+. +.++.|++++|++++..+..+. ++++|++|++++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666663 344332 3456666666666654444454 566666666666666554445555555555555555
Q ss_pred cCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCC
Q 012260 280 NGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 280 n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
|+++. ..+..|..+++|++|+|++|++++..|..|.. +++|++|+|++|++++.
T Consensus 98 N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 98 NHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-------------------------MAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-------------------------CTTCCEEECCSSCCCSC
T ss_pred CcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCC-------------------------cccCCEEECCCCcCCee
Confidence 55554 22333444555555555555555444444444 45555555555555533
Q ss_pred Cchhh---hCCCCCCEEEccCCcccccCCCC-ccccccc-CCeeeecCCCCCCcCcccccC-CCCC------CCCCCccc
Q 012260 360 VPEEF---GVLEFVGEINLENNNLSGRVPFS-AKFSTKV-GEKLKLKGNPDLCIDEKFSIG-KNAS------GSIGQLKL 427 (467)
Q Consensus 360 ~p~~~---~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~-~~~l~l~~Np~~C~c~~~~~~-~~~~------~~~~~~~~ 427 (467)
.+..+ ..+++|+.|+|++|+|+ .+|.. +...... ++.+++++|||.|+|++.|+. .+.. ........
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~ 230 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLY 230 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCE
T ss_pred CHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCE
Confidence 33333 34556666666666665 33322 1111111 257899999999999976531 1111 12234578
Q ss_pred CCCCCCCcccccccccccCC
Q 012260 428 CKKPDNPKAAMFSDATAASP 447 (467)
Q Consensus 428 C~~p~~~~g~~~~d~~~~~~ 447 (467)
|+.|....+....+...|.+
T Consensus 231 C~~p~~~~~~~~~~~~~C~~ 250 (361)
T 2xot_A 231 CMHSKKLHNIFSLDFFNCSE 250 (361)
T ss_dssp EESSSCCEEGGGCCCTTCCS
T ss_pred eCCChHHcCccccccccCCC
Confidence 99998877765555666654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.3e-22 Score=181.31 Aligned_cols=178 Identities=25% Similarity=0.226 Sum_probs=119.8
Q ss_pred eEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEE
Q 012260 125 KLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEIT 204 (467)
Q Consensus 125 ~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 204 (467)
.++.+++.+. .+|..++ ++|++|++++| .+++..+..|.++++|++|++++|++++..+..|..+++|++|+
T Consensus 11 ~v~c~~~~l~---~~p~~~~----~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 11 TVECYSQGRT---SVPTGIP----AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp EEECCSSCCS---SCCSCCC----TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEecCCCcc---CCCCCCC----CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 3444444443 5665553 67778888887 77766556677777888888888777766666677777777777
Q ss_pred ccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCC
Q 012260 205 LSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGN 284 (467)
Q Consensus 205 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 284 (467)
+++|++++..+..+.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 77777776666666777777777777777776555556777777777777777775555556667777777777776554
Q ss_pred CChhHHhhcCcCCcEEeccCccCCCCchhHhhcC
Q 012260 285 FGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESL 318 (467)
Q Consensus 285 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 318 (467)
.+++|++|+++.|+++|.+|..++.+
T Consensus 163 --------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 --------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp --------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred --------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 23456666666666666666555443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=2.8e-22 Score=197.64 Aligned_cols=253 Identities=13% Similarity=0.020 Sum_probs=192.3
Q ss_pred ccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCccc-ccccCCCCCCE-Ee
Q 012260 151 LEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFS-FSLDKLKKLRI-LD 228 (467)
Q Consensus 151 L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~ 228 (467)
-++++.+++ .++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.
T Consensus 11 ~~~v~C~~~-~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 11 NRVFLCQES-KVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TTEEEEEST-TCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CCEEEecCC-CCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 367788888 777 477665 4689999999999977666789999999999999999977665 47889998875 66
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccc-cCCCCCChhHHhhcC-cCCcEEeccCcc
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSF-NGFGNFGVPTFLAEM-DKLREVYLSGNF 306 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l-~~L~~L~L~~n~ 306 (467)
+.+|+++...|..|.++++|++|++++|++++..+..+....++..+++.+ +++.. ..+..+..+ ..++.|+|++|+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccc
Confidence 678999987788899999999999999999977666777777888899866 55655 222334444 468999999999
Q ss_pred CCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCC
Q 012260 307 LGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPF 386 (467)
Q Consensus 307 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~ 386 (467)
++...+.. ....+|+++++++|+..+.+|...+..+++|++|||++|+++...+.. +.+|+.|.+.++.--..+|.
T Consensus 166 i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 166 IQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred ccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 99544444 456789999998655445898876658999999999999999544433 45677777766543347774
Q ss_pred CcccccccCCeeeecCCCCCCcCcccccC
Q 012260 387 SAKFSTKVGEKLKLKGNPDLCIDEKFSIG 415 (467)
Q Consensus 387 ~~~~~~~~~~~l~l~~Np~~C~c~~~~~~ 415 (467)
+.....+ +.+++. ||+.|.|-..|..
T Consensus 242 -l~~l~~L-~~l~l~-~~~~c~~~~~~~~ 267 (350)
T 4ay9_X 242 -LEKLVAL-MEASLT-YPSHCCAFANWRR 267 (350)
T ss_dssp -TTTCCSC-CEEECS-CHHHHHHHHHSCC
T ss_pred -chhCcCh-hhCcCC-CCccccchhhhhh
Confidence 3334444 677774 7888977555543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=8.5e-22 Score=179.34 Aligned_cols=158 Identities=22% Similarity=0.187 Sum_probs=68.3
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeecc
Q 012260 199 GLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLS 278 (467)
Q Consensus 199 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 278 (467)
+|++|++++|++++..+..+.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333334444444444444444443333334444444444444
Q ss_pred ccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCC
Q 012260 279 FNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQG 358 (467)
Q Consensus 279 ~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 358 (467)
+|++++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|
T Consensus 109 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 109 TNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT
T ss_pred CCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc
Confidence 444443 222223344444444444444443333334444444444444444332 12334444444444444
Q ss_pred CCchhhh
Q 012260 359 NVPEEFG 365 (467)
Q Consensus 359 ~~p~~~~ 365 (467)
.+|..++
T Consensus 180 ~ip~~~~ 186 (208)
T 2o6s_A 180 VVRNSAG 186 (208)
T ss_dssp TBBCTTS
T ss_pred eeeccCc
Confidence 4444433
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=6.3e-23 Score=216.17 Aligned_cols=283 Identities=13% Similarity=0.056 Sum_probs=173.4
Q ss_pred hcCCCCceEecccccCCC--CcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCC---------
Q 012260 118 TSFKHLRKLFFYKCFTEK--QVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGV--------- 186 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~--~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l--------- 186 (467)
..+++|++|++++|.+.+ ...++..+ .++ ++|++|++++| .+.+ +|..+.++++|++|++++...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~-~~L~~L~L~~~-~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIA-RNC-RSLVSVKVGDF-EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHH-HHC-TTCCEEECSSC-BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHH-hhC-CCCcEEeccCc-cHHH-HHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 667777777777765541 01222222 455 67777777777 6655 556666666666666653221
Q ss_pred -----------------CCCcccccCCCCCCCEEEccCCcCCCccc-ccccCCCCCCEEeccCCcCCCCchhhhhCCCCC
Q 012260 187 -----------------YGGIPDKVGDLVGLEEITLSRNKLSGGFS-FSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNL 248 (467)
Q Consensus 187 -----------------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 248 (467)
.+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 13344455556666666666666553332 234566666666666322222233334556777
Q ss_pred CEEEccC-----------CcCCCC-ccccccCCCCCCeeeccccCCCCCChhHHhhc-CcCCcEEecc----CccCCCC-
Q 012260 249 LKLDLSS-----------NVCSGK-IPESLGHLKSLEFMDLSFNGFGNFGVPTFLAE-MDKLREVYLS----GNFLGGE- 310 (467)
Q Consensus 249 ~~L~L~~-----------n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~L~L~----~n~l~~~- 310 (467)
++|++++ |.+++. ++.....+++|++|+++.|++++ ..+..+.. +++|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 7777772 444432 12223457778888887777776 44444544 7788888885 5667653
Q ss_pred ----chhHhhcCCCCcEEeccCC--CCCCCCchHHHhcccCCCEEeccCCCCCC-CCchhhhCCCCCCEEEccCCccccc
Q 012260 311 ----IPEIWESLGGIVGIGLSGT--GLVGKIPASMGIHLKKLSYLSLDNNKLQG-NVPEEFGVLEFVGEINLENNNLSGR 383 (467)
Q Consensus 311 ----~p~~~~~l~~L~~L~Ls~N--~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~g~ 383 (467)
++..+..+++|++|++++| .+++..+..+...+++|++|++++|++++ .++..+..+++|++|++++|.+++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 4445667888888888743 36666666666457888999999888875 3455667888899999999988754
Q ss_pred CCCCc-ccccccCCeeeecCCCCC
Q 012260 384 VPFSA-KFSTKVGEKLKLKGNPDL 406 (467)
Q Consensus 384 ip~~~-~~~~~~~~~l~l~~Np~~ 406 (467)
....+ .... .++.|++++|+..
T Consensus 504 ~~~~~~~~l~-~L~~L~ls~n~it 526 (592)
T 3ogk_B 504 AIAAAVTKLP-SLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHCS-SCCEEEEESCBCC
T ss_pred HHHHHHHhcC-ccCeeECcCCcCC
Confidence 32222 2233 3478899888843
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.7e-21 Score=202.73 Aligned_cols=185 Identities=24% Similarity=0.300 Sum_probs=121.4
Q ss_pred CCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCC
Q 012260 122 HLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLE 201 (467)
Q Consensus 122 ~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 201 (467)
+|++|++++|.+. .+|..++ ++|++|++++| .++ .+| ..+++|++|++++|++++ +|. +.+ +|+
T Consensus 60 ~L~~L~Ls~n~L~---~lp~~l~----~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLS---SLPDNLP----PQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCS---CCCSCCC----TTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred CccEEEeCCCCCC---ccCHhHc----CCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence 7888888888776 4776653 67888888888 777 466 457888888888888866 565 554 788
Q ss_pred EEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccC
Q 012260 202 EITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNG 281 (467)
Q Consensus 202 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 281 (467)
+|++++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. |. ++|++|++++|+
T Consensus 124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred EEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 88888888876 454 56778888888888775 454 46777777777777775 555 54 677777777777
Q ss_pred CCCCChhHHhhcCcCC-------cEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHH
Q 012260 282 FGNFGVPTFLAEMDKL-------REVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMG 340 (467)
Q Consensus 282 l~~~~~p~~~~~l~~L-------~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 340 (467)
++. +|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+.
T Consensus 192 L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 192 LES--LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CSS--CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCc--hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 765 343 322 44 55555555555 2344444455555555555555544444443
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=2.7e-22 Score=211.35 Aligned_cols=304 Identities=14% Similarity=0.069 Sum_probs=197.0
Q ss_pred eeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcC--CCCCCCccccCCccEEEcccCCCcc--
Q 012260 88 HITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVP--VPDNIPASFGSSLEELVFIDNPSFV-- 163 (467)
Q Consensus 88 ~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~--ip~~l~~~l~~~L~~L~L~~n~~l~-- 163 (467)
+++.|+|++... .....++ .+..++++|++|+|++|.+.+.+. ++... ..+ ++|++|++++| .++
T Consensus 139 ~L~~L~L~~~~~-------~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~~-~~L~~L~L~~n-~~~~~ 207 (592)
T 3ogk_B 139 DLETLKLDKCSG-------FTTDGLL-SIVTHCRKIKTLLMEESSFSEKDGKWLHELA-QHN-TSLEVLNFYMT-EFAKI 207 (592)
T ss_dssp GCCEEEEESCEE-------EEHHHHH-HHHHHCTTCSEEECTTCEEECCCSHHHHHHH-HHC-CCCCEEECTTC-CCSSC
T ss_pred cCcEEECcCCCC-------cCHHHHH-HHHhhCCCCCEEECccccccCcchhHHHHHH-hcC-CCccEEEeecc-CCCcc
Confidence 488999974210 0001122 223689999999999987653110 22222 566 89999999999 886
Q ss_pred --cccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcC--------------------------CCccc
Q 012260 164 --GPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKL--------------------------SGGFS 215 (467)
Q Consensus 164 --~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l--------------------------~~~~p 215 (467)
+.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.... .+.+|
T Consensus 208 ~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~ 286 (592)
T 3ogk_B 208 SPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG
T ss_pred CHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH
Confidence 4566677889999999999999865 667777778888888764321 12334
Q ss_pred ccccCCCCCCEEeccCCcCCCCch-hhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeecc-----------ccCCC
Q 012260 216 FSLDKLKKLRILDLSQNQFDGNVP-EEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLS-----------FNGFG 283 (467)
Q Consensus 216 ~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls-----------~n~l~ 283 (467)
..+..+++|++|++++|.+++... ..+.++++|++|+++++...+.++.....+++|++|+++ .|.++
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 445556667777777766553333 334566777777776332222233333556778888887 35555
Q ss_pred CCChhHHhhcCcCCcEEeccCccCCCCchhHhhc-CCCCcEEecc----CCCCCCC-----CchHHHhcccCCCEEeccC
Q 012260 284 NFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWES-LGGIVGIGLS----GTGLVGK-----IPASMGIHLKKLSYLSLDN 353 (467)
Q Consensus 284 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----ip~~~~~~l~~L~~L~Ls~ 353 (467)
...++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+. .+++|++|++++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~-~~~~L~~L~L~~ 445 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI-GCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH-HCTTCCEEEEEC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH-hCCCCCEEEEec
Confidence 4224444556788888888888887766666655 8888888886 6677642 333343 688888888875
Q ss_pred CC--CCCCCchhhh-CCCCCCEEEccCCccccc-CCCCcccccccCCeeeecCCCC
Q 012260 354 NK--LQGNVPEEFG-VLEFVGEINLENNNLSGR-VPFSAKFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 354 N~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~~~~l~l~~Np~ 405 (467)
|. +++..+..+. .+++|++|++++|++++. ++..+..... +++|++++|+.
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~l~~n~l 500 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN-LQKLEMRGCCF 500 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT-CCEEEEESCCC
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc-cCeeeccCCCC
Confidence 43 6655554444 488899999999998752 3322222333 48999999984
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=1.3e-20 Score=174.26 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=89.8
Q ss_pred CEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccC
Q 012260 249 LKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSG 328 (467)
Q Consensus 249 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (467)
+.++.++++++ .+|..+. ++|++|++++|++++ ..|..+..+++|++|+|++|+++...+..|..+++|++|+|++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34444444443 3343332 455555555555555 3344455555556666666655544445555666666666666
Q ss_pred CCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCc
Q 012260 329 TGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 329 N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~ 408 (467)
|+++ .++...+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+.....+ +.+++++|||.|+
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL-THAYLFGNPWDCE 174 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECTTSCBCTT
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC-CEEEeeCCCccCC
Confidence 6666 333332225667777777777776 566666777777777777777773333333333333 7788888888888
Q ss_pred Cc
Q 012260 409 DE 410 (467)
Q Consensus 409 c~ 410 (467)
|+
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 86
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=168.07 Aligned_cols=153 Identities=22% Similarity=0.269 Sum_probs=121.5
Q ss_pred ceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccc-hhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCE
Q 012260 124 RKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLG-GIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEE 202 (467)
Q Consensus 124 ~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 202 (467)
++++++++.+. .+|..+| ..+++|++++| .+++..| ..|.++++|++|++++|++++..+..|.++++|++
T Consensus 14 ~~l~~s~n~l~---~iP~~~~----~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLN---KIPEHIP----QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCS---SCCSCCC----TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcc---cCccCCC----CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 35666666665 5777663 56788888888 8887654 45778888888888888887777778888888888
Q ss_pred EEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCC
Q 012260 203 ITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGF 282 (467)
Q Consensus 203 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 282 (467)
|+|++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..|..|..+++|++|++++|.+
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 88888888877777788888888888888888877777888888888888888888877777888888888888888877
Q ss_pred CC
Q 012260 283 GN 284 (467)
Q Consensus 283 ~~ 284 (467)
..
T Consensus 166 ~c 167 (220)
T 2v70_A 166 NC 167 (220)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=4.4e-20 Score=182.62 Aligned_cols=176 Identities=26% Similarity=0.196 Sum_probs=129.5
Q ss_pred ceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhc-CCCCCCEEEeecCCCCCCcccccCCCCCCCE
Q 012260 124 RKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIG-SFTNLRRLVLTGNGVYGGIPDKVGDLVGLEE 202 (467)
Q Consensus 124 ~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 202 (467)
+.++++++.+. .+|..+| +.+++|+|++| .+++..+..+. ++++|++|+|++|++++..+..|.++++|++
T Consensus 21 ~~l~c~~~~l~---~iP~~~~----~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLP---NVPQSLP----SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCS---SCCSSCC----TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcC---ccCccCC----CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 34555555555 5776663 56788888888 88776666676 7888888888888887777777888888888
Q ss_pred EEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccc---cCCCCCCeeeccc
Q 012260 203 ITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESL---GHLKSLEFMDLSF 279 (467)
Q Consensus 203 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~ 279 (467)
|+|++|++++..+..|.++++|+.|++++|++++..+..|.++++|++|+|++|++++..+..| ..+++|++|+|++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 8888888887767778888888888888888887777778888888888888888875433444 4577788888888
Q ss_pred cCCCCCChhHHhhcCcC--CcEEeccCccCC
Q 012260 280 NGFGNFGVPTFLAEMDK--LREVYLSGNFLG 308 (467)
Q Consensus 280 n~l~~~~~p~~~~~l~~--L~~L~L~~n~l~ 308 (467)
|+++. ..+..+..++. ++.|+|++|.+.
T Consensus 173 N~l~~-l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKK-LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCC-CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCc-cCHHHhhhccHhhcceEEecCCCcc
Confidence 88877 33455666665 367777777765
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.82 E-value=9.5e-21 Score=170.38 Aligned_cols=164 Identities=20% Similarity=0.246 Sum_probs=120.0
Q ss_pred CeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEecc
Q 012260 273 EFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLD 352 (467)
Q Consensus 273 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls 352 (467)
+++++++|+++. +|..+ .++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+. .+++|++|+|+
T Consensus 13 ~~l~~~~~~l~~--ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred CEEEcCCCCCCc--CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECC
Confidence 456666666655 34322 246777777777777 5556777888888888888888854444555 78889999999
Q ss_pred CCCCCCCCchhhhCCCCCCEEEccCCcccccCCCC-cccccccCCeeeecCCCCCCcCcccccCCCCCC--CCCCcccCC
Q 012260 353 NNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFS-AKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASG--SIGQLKLCK 429 (467)
Q Consensus 353 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~--~~~~~~~C~ 429 (467)
+|++++..|..|..+++|++|+|++|+++ .+|.. +..... ++.+++++|||.|+|++.|+.++... .......|+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~ 164 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA-LSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCA 164 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTT-CCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCcc-ccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcC
Confidence 99998877888889999999999999998 55554 333434 48999999999999999887764322 223447899
Q ss_pred CCCCCcccccccccc
Q 012260 430 KPDNPKAAMFSDATA 444 (467)
Q Consensus 430 ~p~~~~g~~~~d~~~ 444 (467)
.|+.++|..+.+...
T Consensus 165 ~P~~l~g~~l~~~~~ 179 (193)
T 2wfh_A 165 GPGEMADKLLLTTPS 179 (193)
T ss_dssp ESGGGTTCBTTTSCG
T ss_pred CchHHCCCCcccCCh
Confidence 999999966655443
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.7e-19 Score=172.95 Aligned_cols=188 Identities=22% Similarity=0.274 Sum_probs=96.9
Q ss_pred ccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEecc
Q 012260 151 LEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLS 230 (467)
Q Consensus 151 L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 230 (467)
+..+.+..+ .+.+..+ +..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +.++++|++|+++
T Consensus 26 ~~~~~l~~~-~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCS-CTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCC-Ccccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 334444444 4443222 23466677777777776443 2 35666667777777766665433 6666666666666
Q ss_pred CCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCC
Q 012260 231 QNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGE 310 (467)
Q Consensus 231 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 310 (467)
+|++++ ++ .+..+++|++|++++|++++. ..+..+++|++|++++|+++++ ..+..+++|+.|++++|++++.
T Consensus 99 ~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 99 ENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccc
Confidence 666653 22 255666666666666665532 2345555555555555555541 2344445555555555554433
Q ss_pred chhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCC
Q 012260 311 IPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 311 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
.+ +..+++|++|++++|.++ .++. +. .+++|+.|++++|+++
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~-~l~~-l~-~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHIS-DLRA-LA-GLKNLDVLELFSQECL 213 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCC-BCGG-GT-TCTTCSEEEEEEEEEE
T ss_pred hh--hcCCCccCEEECCCCcCC-CChh-hc-cCCCCCEEECcCCccc
Confidence 32 444444444444444444 2222 22 3444444444444443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=5.4e-20 Score=176.46 Aligned_cols=168 Identities=27% Similarity=0.339 Sum_probs=98.3
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
++|++|++++| .+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. + .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~-~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTS-CCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred CcccEEEccCC-CcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEE
Confidence 55556666555 44432 2 25555666666666666654433 55666666666666666542 2 355666666666
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (467)
+++|++++. +.+..+++|++|++++|++++. ..+..+++|++|++++|++++ ..+ +..+++|+.|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCC
Confidence 666666542 3455666666666666666543 455666666666666666665 222 566666666666666666
Q ss_pred CCchhHhhcCCCCcEEeccCCCCC
Q 012260 309 GEIPEIWESLGGIVGIGLSGTGLV 332 (467)
Q Consensus 309 ~~~p~~~~~l~~L~~L~Ls~N~l~ 332 (467)
+. + .+..+++|+.|++++|.++
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 43 2 2566666777777766665
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.2e-19 Score=166.68 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=116.3
Q ss_pred eEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEE
Q 012260 125 KLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEIT 204 (467)
Q Consensus 125 ~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 204 (467)
.++++++.+. .+|..+| ++|++|++++| .+++..+..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 15 ~v~c~~~~l~---~iP~~l~----~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 15 IVDCRGKGLT---EIPTNLP----ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp EEECTTSCCS---SCCSSCC----TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred EEEcCCCCcC---cCCCccC----cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 4555555554 6776663 67888888888 78776666788888888888888888777788888888888888
Q ss_pred ccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCC
Q 012260 205 LSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGN 284 (467)
Q Consensus 205 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 284 (467)
|++|+++...+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|.+..
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88888886666667778888888888888887777778888888888888888876666667777777777777777654
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=1.3e-20 Score=169.27 Aligned_cols=164 Identities=21% Similarity=0.251 Sum_probs=121.0
Q ss_pred CeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchh-HhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEec
Q 012260 273 EFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPE-IWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSL 351 (467)
Q Consensus 273 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L 351 (467)
+++++++|+++. +|..+ ..++++|++++|++++..+. .+..+++|++|+|++|++++..|..+. .+++|++|+|
T Consensus 11 ~~l~~s~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKE--IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEEC
T ss_pred CEEEcCCCCcCc--CccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEEC
Confidence 456666666654 34332 22677777777777765554 477788888888888888866677766 7888999999
Q ss_pred cCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCC--CCCCCcccCC
Q 012260 352 DNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNAS--GSIGQLKLCK 429 (467)
Q Consensus 352 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~--~~~~~~~~C~ 429 (467)
++|++++..+..|..+++|++|+|++|++++..|..+.....+ +.+++++|||.|+|++.|+..+.. ........|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL-TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG 164 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC-CEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC-CEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCC
Confidence 9999988888788889999999999999998888776655555 899999999999999887654211 1123346899
Q ss_pred CCCCCcccccccc
Q 012260 430 KPDNPKAAMFSDA 442 (467)
Q Consensus 430 ~p~~~~g~~~~d~ 442 (467)
.|+..+|..+.+.
T Consensus 165 ~P~~l~~~~l~~l 177 (192)
T 1w8a_A 165 APSKVRDVQIKDL 177 (192)
T ss_dssp SSTTTTTSBGGGS
T ss_pred CChHHcCCChhhC
Confidence 9999999655444
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=4.9e-21 Score=205.92 Aligned_cols=225 Identities=18% Similarity=0.190 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHhcC-----CCCCCCCCCCCCCCCCCCceeEcCCCCCCCCcccccCCccceeEEEecCCCCCCCCCC
Q 012260 30 LSSLEQDSVYQVLDSVN-----PTIHWRSLFPDDLCSSPPHGVVCDYFTISANDTVSSQTETVHITELSFGYVSDYSPNP 104 (467)
Q Consensus 30 ~~~~~~~all~~~~~~~-----~~~~W~~~~~~~C~~~~w~gv~C~~~~~~~~~~~~~~~~~~~v~~L~L~~~~~~~~~~ 104 (467)
....++++|+++..+.. ....|... ..++. .|.+++++. .+++.++|....
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~s~---------------~~~~~l~L~~n~------ 184 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGD-STPSG--TATNSAVST---------------PLTPKIELFANG------ 184 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCC-CCccc--cCCCceecC---------------CccceEEeeCCC------
Confidence 44567889999987652 22345332 23343 488888765 678888886321
Q ss_pred CCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecC
Q 012260 105 PCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGN 184 (467)
Q Consensus 105 ~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n 184 (467)
...++..+ |+.++|+.+.+. .++++.| .+. ..|..+..+++|+.|+|++|
T Consensus 185 ----~~~~~~~~------l~~l~Ls~~~i~------------------~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n 234 (727)
T 4b8c_D 185 ----KDEANQAL------LQHKKLSQYSID------------------EDDDIEN-RMV-MPKDSKYDDQLWHALDLSNL 234 (727)
T ss_dssp -------------------------------------------------------------------CCCCCCEEECTTS
T ss_pred ----CCcchhhH------hhcCccCccccc------------------Ccccccc-cee-cChhhhccCCCCcEEECCCC
Confidence 22233322 344444443322 2233333 333 34455666666666666666
Q ss_pred CCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccc
Q 012260 185 GVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPE 264 (467)
Q Consensus 185 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 264 (467)
.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|+.|+|++|.++ .+|..++++++|++|+|++|.++ .+|.
T Consensus 235 ~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~ 310 (727)
T 4b8c_D 235 QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW 310 (727)
T ss_dssp CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS
T ss_pred CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh
Confidence 664 45555556666666666666666 55666666666666666666666 55666666666666666666665 5566
Q ss_pred cccCCCCCCeeeccccCCCCCChhHHhhcCcC-CcEEeccCccCCCCchh
Q 012260 265 SLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDK-LREVYLSGNFLGGEIPE 313 (467)
Q Consensus 265 ~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~ 313 (467)
.|+.+++|++|+|++|.+++ .+|..+..... +..++|++|.+++.+|.
T Consensus 311 ~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp STTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred hhhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66666666666666666666 55555543321 22355666666665553
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=6.6e-20 Score=192.69 Aligned_cols=192 Identities=21% Similarity=0.272 Sum_probs=136.3
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
..+..+.+..+ .+...++ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~-~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCS-CTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCC-Ccccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 45666677766 6665443 45678888888888887543 3 47778888888888888886554 77888888888
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (467)
|++|.+++ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|+++++ ..+..+++|+.|+|++|.++
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCC
Confidence 88888874 33 577778888888888877743 3567777778888877777762 45667777777777777777
Q ss_pred CCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCC
Q 012260 309 GEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGN 359 (467)
Q Consensus 309 ~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 359 (467)
+..| +..+++|+.|+|++|++++ +| .+. .+++|+.|+|++|++++.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~-~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISD-LR-ALA-GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CG-GGT-TCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCC-Ch-HHc-cCCCCCEEEccCCcCcCC
Confidence 6655 6677777777777777763 44 344 677777777777777643
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=4.9e-19 Score=163.63 Aligned_cols=150 Identities=25% Similarity=0.245 Sum_probs=120.4
Q ss_pred EecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEc
Q 012260 126 LFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITL 205 (467)
Q Consensus 126 L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 205 (467)
++.+++.+. .+|..+| ++|++|++++| .+++..|..|.++++|++|+|++|++....+..|..+++|++|+|
T Consensus 24 v~c~~~~l~---~ip~~~~----~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 24 VDCRSKRHA---SVPAGIP----TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EECTTSCCS---SCCSCCC----TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eEccCCCcC---ccCCCCC----CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 444444444 6776664 78889999998 888888888888899999999999987666677888888899999
Q ss_pred cCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCC
Q 012260 206 SRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGN 284 (467)
Q Consensus 206 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 284 (467)
++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888888777777888888888888888888 677778888888888888888886666677778888888888887765
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.8e-19 Score=189.43 Aligned_cols=173 Identities=23% Similarity=0.266 Sum_probs=130.1
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
..+++|+.|++++|.+. .+| .+ ..+ ++|++|+|++| .+.+..| +.++++|+.|+|++|.+.+ +| .+..+
T Consensus 40 ~~L~~L~~L~l~~n~i~---~l~-~l-~~l-~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK---SVQ-GI-QYL-PNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCC---CCT-TG-GGC-TTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTC
T ss_pred hcCCCCCEEECcCCCCC---CCh-HH-ccC-CCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccC
Confidence 66778888888887776 454 35 677 78888888888 7777554 7788888888888888855 33 67778
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
++|++|+|++|.+++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 8888888888888753 3577788888888888888754 467778888888888888876655 777888888888
Q ss_pred cccCCCCCChhHHhhcCcCCcEEeccCccCCCC
Q 012260 278 SFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGE 310 (467)
Q Consensus 278 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 310 (467)
++|.+++ ++ .+..+++|+.|+|++|++.+.
T Consensus 183 s~N~i~~--l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 183 SKNHISD--LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCB--CG-GGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCC--Ch-HHccCCCCCEEEccCCcCcCC
Confidence 8888776 23 467778888888888877654
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=2.2e-22 Score=210.23 Aligned_cols=120 Identities=22% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEecc
Q 012260 248 LLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLS 327 (467)
Q Consensus 248 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 327 (467)
|+.|++++|.+++ +|. ++.+++|+.|++++|+++. +|..++.+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 4555555555543 343 5555555555555555553 44455555555555555555554 33 45555555555555
Q ss_pred CCCCCCCC-chHHHhcccCCCEEeccCCCCCCCCch---hhhCCCCCCEEE
Q 012260 328 GTGLVGKI-PASMGIHLKKLSYLSLDNNKLQGNVPE---EFGVLEFVGEIN 374 (467)
Q Consensus 328 ~N~l~~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~ 374 (467)
+|++++.. |..+. .+++|+.|+|++|++++.+|. .+..+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGG-GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHh-cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55555443 55554 555555566655555544331 223355566554
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2e-20 Score=197.07 Aligned_cols=135 Identities=14% Similarity=0.097 Sum_probs=89.9
Q ss_pred CCCCCeeeccccCCCCCChhHHh-hcCcCCcEEecc--C----ccCCCC-----chhHhhcCCCCcEEeccCCCCCCCCc
Q 012260 269 LKSLEFMDLSFNGFGNFGVPTFL-AEMDKLREVYLS--G----NFLGGE-----IPEIWESLGGIVGIGLSGTGLVGKIP 336 (467)
Q Consensus 269 l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~ip 336 (467)
+++|++|.+..|++++ .....+ ..+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+
T Consensus 371 ~~~L~~L~~~~~~l~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTN-AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCH-HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCH-HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 5667777666666665 333333 357788888887 3 455522 223356778888888876 6665555
Q ss_pred hHHHhcccCCCEEeccCCCCCCCCchhh-hCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCC
Q 012260 337 ASMGIHLKKLSYLSLDNNKLQGNVPEEF-GVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 337 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~ 405 (467)
..+...+++|++|+|++|.+++..+..+ ..+++|+.|++++|.+++..+..+......++.|++++|+.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5665348889999999999876555444 67889999999999986543332222223348999999986
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=8.7e-19 Score=158.00 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=77.3
Q ss_pred CCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEe
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILD 228 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 228 (467)
++|++|++++| .++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANI-NVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESS-CCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCC-Ccc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 55555565555 554 233 35555566666666554422 22455555555555555555554555555555555555
Q ss_pred ccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCC
Q 012260 229 LSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 229 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 308 (467)
+++|++++..+..+..+++|++|++++|...+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCcccC
Confidence 55555555455555555555555555555222333 34455555555555555544 11 3344455555555555443
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=6.7e-21 Score=200.69 Aligned_cols=183 Identities=16% Similarity=0.063 Sum_probs=102.3
Q ss_pred CCCCCCEEeccCCcCCCCch-hhhhCCCCCCEEEccCCcCCCC-ccccccCCCCCCeeecc---------ccCCCCCChh
Q 012260 220 KLKKLRILDLSQNQFDGNVP-EEMGNLTNLLKLDLSSNVCSGK-IPESLGHLKSLEFMDLS---------FNGFGNFGVP 288 (467)
Q Consensus 220 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls---------~n~l~~~~~p 288 (467)
.+++|++|++++|.+++... ..+.++++|++|++++| ++.. ++.....+++|++|++. .+.+++..+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 34555555555555443221 12345555555555555 2211 11112235666666662 2334331122
Q ss_pred HHhhcCcCCcEEeccCccCCCCchhHhh-cCCCCcEEecc--C----CCCCCCCch-----HHHhcccCCCEEeccCCCC
Q 012260 289 TFLAEMDKLREVYLSGNFLGGEIPEIWE-SLGGIVGIGLS--G----TGLVGKIPA-----SMGIHLKKLSYLSLDNNKL 356 (467)
Q Consensus 289 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~ip~-----~~~~~l~~L~~L~Ls~N~l 356 (467)
.....+++|+.|.+..|++++..+..+. .+++|++|+++ + +.++ ..|. .+...+++|++|+|++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 2223467777777777777655555554 57888888888 3 4554 2221 1122677888888876 66
Q ss_pred CCCCchhhhC-CCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCC
Q 012260 357 QGNVPEEFGV-LEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPD 405 (467)
Q Consensus 357 ~~~~p~~~~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~ 405 (467)
++..+..+.. +++|+.|+|++|.+++..+..+......++.|++++|+.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 6555555554 788999999999887544433312123348999999986
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=6.2e-20 Score=197.37 Aligned_cols=225 Identities=20% Similarity=0.132 Sum_probs=127.8
Q ss_pred CCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCC
Q 012260 121 KHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGL 200 (467)
Q Consensus 121 ~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 200 (467)
++++.|+|.++.+. .+|. ..|+.++|+.| .+. .+++..|.+. ..|..+..++.|
T Consensus 173 ~~~~~l~L~~n~~~---~~~~-------~~l~~l~Ls~~-~i~--------------~~~~~~n~~~-~~~~~~~~l~~L 226 (727)
T 4b8c_D 173 PLTPKIELFANGKD---EANQ-------ALLQHKKLSQY-SID--------------EDDDIENRMV-MPKDSKYDDQLW 226 (727)
T ss_dssp ---------------------------------------------------------------------------CCCCC
T ss_pred CccceEEeeCCCCC---cchh-------hHhhcCccCcc-ccc--------------Ccccccccee-cChhhhccCCCC
Confidence 44566666665544 2222 23455566665 333 3455556663 668889999999
Q ss_pred CEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeecccc
Q 012260 201 EEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFN 280 (467)
Q Consensus 201 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n 280 (467)
+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|
T Consensus 227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 227 HALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred cEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence 99999999998 67777889999999999999999 88999999999999999999999 78999999999999999999
Q ss_pred CCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCC-CcEEeccCCCCCCCCchHHHhcccCCCEEeccCC-----
Q 012260 281 GFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGG-IVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNN----- 354 (467)
Q Consensus 281 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N----- 354 (467)
.++. +|..++.+++|+.|+|++|.+++.+|..+..... +..++|++|.+++.+|.. |+.|++++|
T Consensus 304 ~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-------l~~l~l~~n~~~~~ 374 (727)
T 4b8c_D 304 MVTT--LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-------RRFIEINTDGEPQR 374 (727)
T ss_dssp CCCC--CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------
T ss_pred CCCc--cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-------cceeEeeccccccc
Confidence 9976 6878999999999999999999999988865432 234789999999888853 556777777
Q ss_pred ---CCCCCCchhhhCCCCCCEEEccCCccccc
Q 012260 355 ---KLQGNVPEEFGVLEFVGEINLENNNLSGR 383 (467)
Q Consensus 355 ---~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 383 (467)
.+.+..+..+..+..+....+++|.+.+.
T Consensus 375 ~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 375 EYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ---------------------------CCCGG
T ss_pred ccCCccccccchhhcccccceeeeeccccccc
Confidence 44444555566677778888899988643
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1e-18 Score=157.58 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=82.4
Q ss_pred CCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCe
Q 012260 195 GDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEF 274 (467)
Q Consensus 195 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 274 (467)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45566666777666666 333 46666666666666665442 224555666666666666665545555555555555
Q ss_pred eeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCC
Q 012260 275 MDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNN 354 (467)
Q Consensus 275 L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N 354 (467)
|++++|++++ ..+..+..+++|++|++++|++ ++ .+| .+. .+++|++|++++|
T Consensus 117 L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~~-----------------------i~-~~~-~l~-~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDD-SILTKINTLPKVNSIDLSYNGA-----------------------IT-DIM-PLK-TLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBG-GGHHHHTTCSSCCEEECCSCTB-----------------------CC-CCG-GGG-GCSSCCEEECTTB
T ss_pred EEecCCccCc-HhHHHHhhCCCCCEEEccCCCC-----------------------cc-ccH-hhc-CCCCCCEEECCCC
Confidence 5555555554 3444444444555555544441 22 333 233 4555555555555
Q ss_pred CCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 355 KLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 355 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
++++ ++ .+..+++|+.|++++|++.
T Consensus 170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 GVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 5553 22 4555566666666666554
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.2e-19 Score=167.65 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=92.0
Q ss_pred CCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEE
Q 012260 173 FTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLD 252 (467)
Q Consensus 173 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 252 (467)
+.+++.++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455666667777664432 45566677777777776663 33 56666666666666666664333 66666666666
Q ss_pred ccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCC
Q 012260 253 LSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLV 332 (467)
Q Consensus 253 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 332 (467)
+++|++++ +|.. .. ++|++|++++|++++ ++ .+..+++|+.|++++|++++. + .+.
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~---------------- 147 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD--TD-SLIHLKNLEILSIRNNKLKSI-V-MLG---------------- 147 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB--SG-GGTTCTTCCEEECTTSCCCBC-G-GGG----------------
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccCC--Ch-hhcCcccccEEECCCCcCCCC-h-HHc----------------
Confidence 66666653 2221 11 555555555555554 11 244444555555555544432 1 233
Q ss_pred CCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 333 GKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 333 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
.+++|++|++++|++++. ..+..+++|+.|++++|+++
T Consensus 148 ---------~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 148 ---------FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ---------GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ---------cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 455555555555555533 34455555555555555555
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=1.2e-21 Score=204.63 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=83.9
Q ss_pred CCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEe
Q 012260 271 SLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLS 350 (467)
Q Consensus 271 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 350 (467)
.|+.|++++|++++ +|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+. .+++|+.|+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~-~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA-NLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT-TCSSCCEEE
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC-CCCCCcEEE
Confidence 47788888888877 455 777888888888888887 667778888888888888888884 67 555 788888888
Q ss_pred ccCCCCCCCC-chhhhCCCCCCEEEccCCcccccCC
Q 012260 351 LDNNKLQGNV-PEEFGVLEFVGEINLENNNLSGRVP 385 (467)
Q Consensus 351 Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g~ip 385 (467)
|++|++++.. |..+..+++|+.|+|++|++++..|
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 8888888766 7788888888888888888885554
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=2.2e-18 Score=154.80 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=116.3
Q ss_pred CEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccC
Q 012260 249 LKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSG 328 (467)
Q Consensus 249 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (467)
+++++++|+++ .+|..+. .++++|++++|+++++.....+..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666664 4555443 26777777777776621112367777888888888888877777788888888888888
Q ss_pred CCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCc
Q 012260 329 TGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCI 408 (467)
Q Consensus 329 N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~ 408 (467)
|++++..+..+. .+++|++|+|++|++++..|..+..+++|++|+|++|.+++..+... .....+...+.++...|.
T Consensus 88 N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~--~~~~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 88 NKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW--FAEWLRKKSLNGGAARCG 164 (192)
T ss_dssp CCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH--HHHHHHHHCCSGGGCBBC
T ss_pred CcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH--HHHHHHHcCCCCCCCCCC
Confidence 888855555555 78888999999999888888888888899999999999987766322 111112234556666776
Q ss_pred CcccccCCCCCCC-CCCcccCCCCC
Q 012260 409 DEKFSIGKNASGS-IGQLKLCKKPD 432 (467)
Q Consensus 409 c~~~~~~~~~~~~-~~~~~~C~~p~ 432 (467)
-+.. +.+..... ......|..++
T Consensus 165 ~P~~-l~~~~l~~l~~~~~~C~~~~ 188 (192)
T 1w8a_A 165 APSK-VRDVQIKDLPHSEFKCSSEN 188 (192)
T ss_dssp SSTT-TTTSBGGGSCTTTCCCCCC-
T ss_pred CChH-HcCCChhhCcHhhcCcCCCC
Confidence 5432 22222112 22335677553
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-18 Score=164.02 Aligned_cols=149 Identities=23% Similarity=0.303 Sum_probs=72.8
Q ss_pred hcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCC
Q 012260 170 IGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLL 249 (467)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 249 (467)
+..+++|++|++++|+++. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|++++ +|. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-Cccc
Confidence 3344444444444444432 22 34444455555555555443322 4445555555555555543 222 112 5555
Q ss_pred EEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCC
Q 012260 250 KLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGT 329 (467)
Q Consensus 250 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 329 (467)
+|++++|++++. ..+..+++|++|++++|++++ ++ .+..+++|+.|++++|++++. ..+..+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 555555555432 235555555555555555554 22 345555566666666655544 33455555555555555
Q ss_pred CCC
Q 012260 330 GLV 332 (467)
Q Consensus 330 ~l~ 332 (467)
.++
T Consensus 183 ~~~ 185 (263)
T 1xeu_A 183 KCV 185 (263)
T ss_dssp EEE
T ss_pred ccc
Confidence 555
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=3e-17 Score=143.84 Aligned_cols=133 Identities=27% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCCCCEEEeecCCCC-CCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEE
Q 012260 173 FTNLRRLVLTGNGVY-GGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKL 251 (467)
Q Consensus 173 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 251 (467)
.++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356667777777665 45566666666666666666666644 455666666666666666665555555556666666
Q ss_pred EccCCcCCCCc-cccccCCCCCCeeeccccCCCCCChh---HHhhcCcCCcEEeccCccCC
Q 012260 252 DLSSNVCSGKI-PESLGHLKSLEFMDLSFNGFGNFGVP---TFLAEMDKLREVYLSGNFLG 308 (467)
Q Consensus 252 ~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~p---~~~~~l~~L~~L~L~~n~l~ 308 (467)
++++|.+++.. +..+..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666655321 1444555555555555555544 111 23444444444444444443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=5.9e-17 Score=141.93 Aligned_cols=133 Identities=26% Similarity=0.321 Sum_probs=102.5
Q ss_pred CCccEEEcccCCCcc-cccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 012260 149 SSLEELVFIDNPSFV-GPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRIL 227 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 227 (467)
++|++|++++| .++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 67778888887 776 66777777788888888888887665 677788888888888888887677777778888888
Q ss_pred eccCCcCCCCc-hhhhhCCCCCCEEEccCCcCCCCcc---ccccCCCCCCeeeccccCCCC
Q 012260 228 DLSQNQFDGNV-PEEMGNLTNLLKLDLSSNVCSGKIP---ESLGHLKSLEFMDLSFNGFGN 284 (467)
Q Consensus 228 ~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l~~ 284 (467)
++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888887542 2667888888888888888875544 367788888888888887765
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=7.2e-17 Score=142.70 Aligned_cols=159 Identities=23% Similarity=0.216 Sum_probs=108.0
Q ss_pred CCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEec
Q 012260 272 LEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSL 351 (467)
Q Consensus 272 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L 351 (467)
.+.+++++|+++. +|.. ..++|+.|++++|++++..+..+..+++|++|++++|+++ .+|...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~--~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTS--VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSS--CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCcc--CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 3556666666665 3322 2357778888888877666666777888888888888887 444433227888888888
Q ss_pred cCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCc-ccccccCCeeeecCCCCCCcCc-ccccCCC---CCCCCCCcc
Q 012260 352 DNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSA-KFSTKVGEKLKLKGNPDLCIDE-KFSIGKN---ASGSIGQLK 426 (467)
Q Consensus 352 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~-~~~~~~~~~l~l~~Np~~C~c~-~~~~~~~---~~~~~~~~~ 426 (467)
++|++++..+..+..+++|++|++++|+++ .+|... ..... ++.+++++|++.|+|+ ..++..+ .........
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~ 161 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTS-LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 161 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTT-CCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcc-cCEEEecCCCeeccCccHHHHHHHHhhCccccccCc
Confidence 888888777777888888999999999888 455543 33333 3789999999999997 3443321 122223456
Q ss_pred cCCCCCCCccc
Q 012260 427 LCKKPDNPKAA 437 (467)
Q Consensus 427 ~C~~p~~~~g~ 437 (467)
.|+.+..+...
T Consensus 162 ~C~~~~~~~~~ 172 (177)
T 2o6r_A 162 KCSGSGKPVRS 172 (177)
T ss_dssp BBTTTCCBGGG
T ss_pred EeCCCCcccce
Confidence 88876554443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=6.5e-17 Score=138.70 Aligned_cols=108 Identities=27% Similarity=0.316 Sum_probs=52.9
Q ss_pred CCCCEEEeecCCCC-CCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEE
Q 012260 174 TNLRRLVLTGNGVY-GGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLD 252 (467)
Q Consensus 174 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 252 (467)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555554 44555555555555555555555543 3444555555555555555544444444445555555
Q ss_pred ccCCcCCCC-ccccccCCCCCCeeeccccCCC
Q 012260 253 LSSNVCSGK-IPESLGHLKSLEFMDLSFNGFG 283 (467)
Q Consensus 253 L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~ 283 (467)
+++|++++. .+..+..+++|++|++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 555544431 1233344444444444444433
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=5.9e-17 Score=138.99 Aligned_cols=127 Identities=28% Similarity=0.347 Sum_probs=98.9
Q ss_pred CCccEEEcccCCCcc-cccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 012260 149 SSLEELVFIDNPSFV-GPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRIL 227 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 227 (467)
++|++|++++| .++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 67788888888 776 67777777888888888888888665 667788888888888888887777777778888888
Q ss_pred eccCCcCCCC-chhhhhCCCCCCEEEccCCcCCCCcc---ccccCCCCCCeeecc
Q 012260 228 DLSQNQFDGN-VPEEMGNLTNLLKLDLSSNVCSGKIP---ESLGHLKSLEFMDLS 278 (467)
Q Consensus 228 ~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls 278 (467)
++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 34678888888888888888876544 467777778877765
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.4e-17 Score=160.85 Aligned_cols=272 Identities=13% Similarity=0.059 Sum_probs=163.2
Q ss_pred CCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCcc-ccCCccEEEcccCCCcc--cccchhhcCCCCCCEEEeec
Q 012260 107 NANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPAS-FGSSLEELVFIDNPSFV--GPLGGIIGSFTNLRRLVLTG 183 (467)
Q Consensus 107 ~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~-l~~~L~~L~L~~n~~l~--~~~p~~l~~l~~L~~L~L~~ 183 (467)
.+.+.+++. .+++++.|.++++.... .+ ..+ .. + ++|++|||++| .+. ...+ +.++.++.+.+..
T Consensus 14 ~l~~~l~~~---~~~~l~~L~l~g~i~~~--~~-~~l-~~~l-~~L~~LdLs~n-~i~~~~~~~---~~~~~~~~~~~~~ 81 (329)
T 3sb4_A 14 TLISMMTEE---EANSITHLTLTGKLNAE--DF-RHL-RDEF-PSLKVLDISNA-EIKMYSGKA---GTYPNGKFYIYMA 81 (329)
T ss_dssp CGGGGSCHH---HHHHCSEEEEEEEECHH--HH-HHH-HHSC-TTCCEEEEEEE-EECCEEESS---SSSGGGCCEEECT
T ss_pred cHHhhccch---hhCceeEEEEeccccHH--HH-HHH-HHhh-ccCeEEecCcc-eeEEecCcc---ccccccccccccc
Confidence 344445442 46678888888642110 11 011 12 4 78999999998 776 1111 1122234444444
Q ss_pred CCCCCCcccccCC--------CCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccC
Q 012260 184 NGVYGGIPDKVGD--------LVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSS 255 (467)
Q Consensus 184 n~l~~~~p~~~~~--------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 255 (467)
|.+ .+..|.+ +++|++|+|.+ .++...+.+|.++++|+.+++++|.+....+..|.++.++..+....
T Consensus 82 ~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 82 NFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 422 2344555 77777777777 66655566777777777777777777655556666666666655544
Q ss_pred Cc----CCCCccccccCCCCCC--------------------------eeeccccCCCCCChhHHhhcCcCCcEEeccCc
Q 012260 256 NV----CSGKIPESLGHLKSLE--------------------------FMDLSFNGFGNFGVPTFLAEMDKLREVYLSGN 305 (467)
Q Consensus 256 n~----l~~~~p~~~~~l~~L~--------------------------~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 305 (467)
+. ........|.++..|+ .+.+.++-... ........+++|+.++|++|
T Consensus 158 ~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 158 SDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp THHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTB
T ss_pred hhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCC
Confidence 21 1111223333344443 33333221111 11112224788888888888
Q ss_pred cCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCC-EEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccC
Q 012260 306 FLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLS-YLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRV 384 (467)
Q Consensus 306 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i 384 (467)
+++...+..|.++++|+++++.+| ++ .|+...+.++++|+ .+++.+ +++.+.+.+|.+|++|+.+++++|+++ .+
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I 312 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TL 312 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EE
T ss_pred CcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-cc
Confidence 888777777888888888888887 65 67766666888888 888888 677566688888888888888888888 66
Q ss_pred CCCcccccccCCeee
Q 012260 385 PFSAKFSTKVGEKLK 399 (467)
Q Consensus 385 p~~~~~~~~~~~~l~ 399 (467)
+...+.....++.++
T Consensus 313 ~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 313 GDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTCTTCCCCEEE
T ss_pred chhhhcCCcchhhhc
Confidence 655443333334443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=140.14 Aligned_cols=127 Identities=21% Similarity=0.243 Sum_probs=92.1
Q ss_pred ceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEE
Q 012260 124 RKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEI 203 (467)
Q Consensus 124 ~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 203 (467)
++++++++.+. .+|..+| ++|++|++++| .++ .+|..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 13 ~~l~~~~~~l~---~ip~~~~----~~l~~L~L~~n-~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLK---VLPKGIP----RDVTELYLDGN-QFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCS---SCCSCCC----TTCCEEECCSS-CCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCC---cCCCCCC----CCCCEEECCCC-cCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 45666666655 6776663 67788888888 776 466777788888888888888877777777777778888
Q ss_pred EccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCC
Q 012260 204 TLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCS 259 (467)
Q Consensus 204 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 259 (467)
+|++|++++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|.+.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88777777776667777777777777777777555555666777777777777664
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=7.2e-16 Score=136.23 Aligned_cols=129 Identities=26% Similarity=0.251 Sum_probs=64.9
Q ss_pred ceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEE
Q 012260 124 RKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEI 203 (467)
Q Consensus 124 ~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 203 (467)
+.++++++.+. .+|..++ ++|++|++++| .+++..+..|+++++|++|++++|++++..+..++.+++|++|
T Consensus 10 ~~l~~~~~~l~---~~p~~~~----~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSKGLT---SVPTGIP----SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSSCCS---SCCTTCC----TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCCc---cCCCCCC----CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 34444444443 4554432 45566666666 5555444445555555555555555554444445555555555
Q ss_pred EccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCC
Q 012260 204 TLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSG 260 (467)
Q Consensus 204 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 260 (467)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 555555554444444455555555555555543333333444444444444444443
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.3e-16 Score=155.54 Aligned_cols=245 Identities=13% Similarity=0.071 Sum_probs=167.7
Q ss_pred CCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCC----CcccccchhhcCCCCCCEEEeecCCCCCCcccccC
Q 012260 120 FKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNP----SFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVG 195 (467)
Q Consensus 120 l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~----~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 195 (467)
+++|++|||++|.+.. ...+. +.+ +.++.+.+..|. .|.+..+..+.++++|+.|+|.+ +++...+.+|.
T Consensus 48 l~~L~~LdLs~n~i~~-~~~~~---~~~-~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-YSGKA---GTY-PNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECC-EEESS---SSS-GGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEE-ecCcc---ccc-cccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 7889999999998761 01111 122 233444444440 22222222233389999999988 88777778899
Q ss_pred CCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCc----CCCCchhhhhCCCCCC----------------------
Q 012260 196 DLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQ----FDGNVPEEMGNLTNLL---------------------- 249 (467)
Q Consensus 196 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~---------------------- 249 (467)
++++|+++++++|.+....+.+|.++.++..+....+. ........|.++..|+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 99999999999998887777788887777777665522 1111222343444444
Q ss_pred ----EEEccCCcCCCCccccc-cCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCc-E
Q 012260 250 ----KLDLSSNVCSGKIPESL-GHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIV-G 323 (467)
Q Consensus 250 ----~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~ 323 (467)
.+.+.++-.. .....+ ..+++|+.+++++|+++. -.+..|.++.+|+.+++.+| ++...+.+|.++++|+ .
T Consensus 202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 3333222110 000111 137899999999999887 33456889999999999998 7777778899999999 9
Q ss_pred EeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEc
Q 012260 324 IGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINL 375 (467)
Q Consensus 324 L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 375 (467)
+++.+ +++ .|+...+.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 279 l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99998 777 676655558999999999999999777789999999998863
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=2.2e-17 Score=148.88 Aligned_cols=126 Identities=23% Similarity=0.262 Sum_probs=60.4
Q ss_pred hhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCC
Q 012260 241 EMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGG 320 (467)
Q Consensus 241 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 320 (467)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+..+++|++|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 45555555555555555543 33 44445555555555555543 33444444555555555555543 22 3444455
Q ss_pred CcEEeccCCCCCCCCch--HHHhcccCCCEEeccCCCCCCCCch----------hhhCCCCCCEEE
Q 012260 321 IVGIGLSGTGLVGKIPA--SMGIHLKKLSYLSLDNNKLQGNVPE----------EFGVLEFVGEIN 374 (467)
Q Consensus 321 L~~L~Ls~N~l~~~ip~--~~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l~~L~~L~ 374 (467)
|++|++++|+++ .++. .+. .+++|++|++++|++++.+|. .+..+++|+.||
T Consensus 117 L~~L~l~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKIT-NWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECC-CHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCC-chhHHHHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 555555555554 2222 222 455555555555555443332 244555555554
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=2.2e-15 Score=132.25 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=90.1
Q ss_pred CcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEcc
Q 012260 297 LREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLE 376 (467)
Q Consensus 297 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 376 (467)
.+.+++++|+++. +|..+ .++|++|+|++|++++..|..+. .+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4667777777764 44333 36778888888888855566665 78888888888888887777777888888888888
Q ss_pred CCcccccCCCCcccccccCCeeeecCCCCCCcCc-ccccCC----CCCC------CCCCcccCCCCCCC
Q 012260 377 NNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDE-KFSIGK----NASG------SIGQLKLCKKPDNP 434 (467)
Q Consensus 377 ~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~-~~~~~~----~~~~------~~~~~~~C~~p~~~ 434 (467)
+|+|++..+..+.....+ +.+++++|||.|+|+ +.|+.+ .... .......|+.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L-~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~~~~ 154 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSL-THIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGTNTP 154 (170)
T ss_dssp SSCCCCCCTTTTTTCTTC-CEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-CCB
T ss_pred CCccCEeCHHHhcCCCCC-CEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCCCcc
Confidence 888884444334444444 889999999999996 544432 1111 12344789876443
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=2.5e-14 Score=142.96 Aligned_cols=266 Identities=12% Similarity=0.088 Sum_probs=175.4
Q ss_pred hcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCC
Q 012260 118 TSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDL 197 (467)
Q Consensus 118 ~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 197 (467)
..+..++.+.+.+. +. .|+...|.++ +|+.+++..+ ++..-..+|.+ .+|+.+.+.. .+....+..|.++
T Consensus 110 ~~~~~l~~i~ip~~-i~---~I~~~aF~~~--~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VK---SIPKDAFRNS--QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp EECSSCSEEECCTT-CC---EECTTTTTTC--CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTC
T ss_pred EecCCccEEEECCc-cC---EehHhhcccC--CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCc
Confidence 44456666666543 22 4555554543 5777777654 44434455666 3688888875 5655556778888
Q ss_pred CCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeec
Q 012260 198 VGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDL 277 (467)
Q Consensus 198 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 277 (467)
++|+.+++.+|+++.....+|. ..+|+.+.+..+ ++..-...|.++++|+.+++..| ++..-..+|.+ .+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 8888888888877755555555 578888888744 66555567778888888888765 44344456666 67888888
Q ss_pred cccCCCCCChhHHhhcCcCCcEEeccCccCC-----CCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEecc
Q 012260 278 SFNGFGNFGVPTFLAEMDKLREVYLSGNFLG-----GEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLD 352 (467)
Q Consensus 278 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls 352 (467)
. ++++. --...|.++++|+.+.+.+|.+. ...+..|.++++|+.+++. +.++ .++...+.++++|+.++|.
T Consensus 256 p-~~i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 256 P-NGVTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp E-TTCCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEEC
T ss_pred C-CCccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEEC
Confidence 4 44444 22456677888888888777654 3455678888888888888 4466 6666666578889998886
Q ss_pred CCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCccc-ccccCCeeeecCCC
Q 012260 353 NNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKF-STKVGEKLKLKGNP 404 (467)
Q Consensus 353 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~l~l~~Np 404 (467)
.| ++..-+.+|.++ +|+.+++++|.+. .++...+. .......+++..|.
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence 55 665556788888 8999999888877 44444332 22223566665543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=3e-17 Score=147.96 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=84.2
Q ss_pred hcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCC
Q 012260 170 IGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLL 249 (467)
Q Consensus 170 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 249 (467)
+.....++.++++.+.+++.+|. ++ .+|..+..+++|++|++++|++++ +| .+.++++|+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~ 73 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR 73 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC
Confidence 34455566666666666555443 00 112244455555555555555543 33 455555555
Q ss_pred EEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCch-hHhhcCCCCcEEeccC
Q 012260 250 KLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIP-EIWESLGGIVGIGLSG 328 (467)
Q Consensus 250 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~ 328 (467)
+|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 74 ~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 74 ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 5555555555 344444445555566666655555 33 34555666666666666654322 3455566666666666
Q ss_pred CCCCCCCch---------HHHhcccCCCEEeccCCCCC
Q 012260 329 TGLVGKIPA---------SMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 329 N~l~~~ip~---------~~~~~l~~L~~L~Ls~N~l~ 357 (467)
|.+++.+|. .....+++|++|| +|.++
T Consensus 150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666544332 1122667777765 55554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5.1e-15 Score=130.66 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=22.7
Q ss_pred CCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcC
Q 012260 199 GLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVC 258 (467)
Q Consensus 199 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 258 (467)
+|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 444444444444422 2333444444444444444422222223344444444444444
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=8.6e-15 Score=129.20 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=48.4
Q ss_pred CCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchh--HhhcCCCCcEE
Q 012260 247 NLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPE--IWESLGGIVGI 324 (467)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L 324 (467)
+|++|++++|.+++. ..+..+++|++|++++|++++ ..+..+..+++|++|++++|+++ .+|. .+..+++|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 444444444444322 334444444444444444443 11222344445555555555543 2222 44455555555
Q ss_pred eccCCCCCCCCchH----HHhcccCCCEEeccCCCCC
Q 012260 325 GLSGTGLVGKIPAS----MGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 325 ~Ls~N~l~~~ip~~----~~~~l~~L~~L~Ls~N~l~ 357 (467)
++++|.++ .+|.. +. .+++|+.||+++|...
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~-~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIY-KVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHH-HCTTCSEETTEECCHH
T ss_pred EecCCCCC-CcHhHHHHHHH-HCCccceeCCCcCCHH
Confidence 55555554 34432 33 5556666666655543
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=7.9e-14 Score=139.30 Aligned_cols=248 Identities=13% Similarity=0.076 Sum_probs=106.0
Q ss_pred cChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcc
Q 012260 112 LNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIP 191 (467)
Q Consensus 112 l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 191 (467)
|+...|.+. +|+.+.+.++ +. .|+...|.++ +|+.+.+.. .+...-+..|.++++|+.+++.+|+++....
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~---~I~~~aF~~~--~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LK---SIGDMAFFNS--TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CC---EECTTTTTTC--CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECT
T ss_pred ehHhhcccC-CccEEEeCCC-cc---EECHHhcCCC--CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEech
Confidence 344444443 4555554433 22 3443333332 355555543 2333233344455555555555555433333
Q ss_pred cccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCC
Q 012260 192 DKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKS 271 (467)
Q Consensus 192 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 271 (467)
..|. ..+|+.+.+..+ ++.....+|.++++|+.+++..+ ++..-...|.+ .+|+.+.+. +.++..-..+|.++++
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCC
Confidence 3333 345555555422 33333444555555555555442 33222333333 445555552 2233233344555555
Q ss_pred CCeeeccccCCC-----CCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCC
Q 012260 272 LEFMDLSFNGFG-----NFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKL 346 (467)
Q Consensus 272 L~~L~Ls~n~l~-----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 346 (467)
|+.+++.+|.+. . --+..|.++++|+.+.+.+ .++......|.++++|+.++|..| ++ .++...+.++ +|
T Consensus 273 L~~l~l~~~~~~~~~~~~-I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L 347 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAM-IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GI 347 (401)
T ss_dssp CCEEEEESSCCCCCTTCE-ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CC
T ss_pred CCEEEeCCccccCCcccE-ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CC
Confidence 555555444432 1 0123344455555555542 244333444445555555555332 33 3333333244 55
Q ss_pred CEEeccCCCCCCCCchhhhCCC-CCCEEEccCC
Q 012260 347 SYLSLDNNKLQGNVPEEFGVLE-FVGEINLENN 378 (467)
Q Consensus 347 ~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N 378 (467)
+.+++++|.+....+..|.+++ .++.|.+..+
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 5555555544433334444442 3444444443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=9.8e-15 Score=128.64 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=71.3
Q ss_pred cEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccC
Q 012260 298 REVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLEN 377 (467)
Q Consensus 298 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 377 (467)
+.+++++|+++ .+|..+ .++|++|+|++|++++..|..+. .+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666665 334333 25677777777777755555555 677777777777777765555667777888888888
Q ss_pred CcccccCCCC-cccccccCCeeeecCCCCCCcCc
Q 012260 378 NNLSGRVPFS-AKFSTKVGEKLKLKGNPDLCIDE 410 (467)
Q Consensus 378 N~l~g~ip~~-~~~~~~~~~~l~l~~Np~~C~c~ 410 (467)
|+|+ .+|.. +.....+ +.+++++|||.|+|+
T Consensus 91 N~l~-~l~~~~~~~l~~L-~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSL-THIYLYNNPWDCECR 122 (174)
T ss_dssp SCCC-CCCTTTTTTCTTC-SEEECCSSCBCTTBG
T ss_pred Cccc-eeCHHHhccccCC-CEEEeCCCCcccccc
Confidence 8887 44443 3333333 778888888888886
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=1.3e-14 Score=142.39 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=94.7
Q ss_pred EEeccCc-cCCCCchhHhhcCCCCcEEeccC-CCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEcc
Q 012260 299 EVYLSGN-FLGGEIPEIWESLGGIVGIGLSG-TGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLE 376 (467)
Q Consensus 299 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 376 (467)
.++++++ +++. +|. +..+++|++|+|++ |.+++..+..+. .+++|++|+|++|+|++..|..|..+++|++|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 6663 555 77777788888875 777744445555 78888888888888888888888888899999999
Q ss_pred CCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCCC---C-CCCcccCCCCCCC
Q 012260 377 NNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASG---S-IGQLKLCKKPDNP 434 (467)
Q Consensus 377 ~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~---~-~~~~~~C~~p~~~ 434 (467)
+|+|+ .+|...+.... ++.|++.+|++.|+|++.|+..+... . ....+.|..|...
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l 148 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPL 148 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCS
T ss_pred CCccc-eeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHH
Confidence 99988 55555443333 48999999999999998887653221 1 1244788887743
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.3e-13 Score=120.86 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=64.2
Q ss_pred CceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCE
Q 012260 123 LRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEE 202 (467)
Q Consensus 123 L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 202 (467)
.++++++++.+. .+|..++ ++|++|++++| .+++..|..|.++++|++|+|++|++++..+..|.++++|++
T Consensus 11 ~~~l~~s~n~l~---~ip~~~~----~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLA---SVPTGIP----TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCS---SCCSCCC----TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcC---ccCccCC----CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 345666666555 4665552 56666666666 666665666666666666666666665555555566666666
Q ss_pred EEccCCcCCCcccccccCCCCCCEEeccCCcCCC
Q 012260 203 ITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDG 236 (467)
Q Consensus 203 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 236 (467)
|+|++|++++..+..|.++++|++|++++|+++.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6666666665555555566666666666665553
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.4e-13 Score=119.64 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=67.0
Q ss_pred ceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEE
Q 012260 124 RKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEI 203 (467)
Q Consensus 124 ~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 203 (467)
+.++++++.+. .+|..+| ++|++|++++| .+++..|..|+++++|++|+|++|++++..+..|.++++|++|
T Consensus 15 ~~l~~~~n~l~---~iP~~~~----~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA---SVPAGIP----TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS---SCCSCCC----TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC---ccCCCcC----CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 45566666554 5666553 56777777777 6776666667777777777777777766555556666666666
Q ss_pred EccCCcCCCcccccccCCCCCCEEeccCCcCC
Q 012260 204 TLSRNKLSGGFSFSLDKLKKLRILDLSQNQFD 235 (467)
Q Consensus 204 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 235 (467)
+|++|++++..+..|..+++|++|++++|++.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666666554445666666666666666655
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=4.6e-14 Score=139.67 Aligned_cols=171 Identities=18% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCCCEEEeecCCCCCCcccccC-----CCCCCCEEEccCCcCCCcccccc-cCCCCCCEEeccCCcCCCCchhhhhCCC
Q 012260 173 FTNLRRLVLTGNGVYGGIPDKVG-----DLVGLEEITLSRNKLSGGFSFSL-DKLKKLRILDLSQNQFDGNVPEEMGNLT 246 (467)
Q Consensus 173 l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 246 (467)
++.|++|+|++|.++......+. ..++|++|+|++|.++......+ ..+++|+.|++++|.++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~-- 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD-- 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH--
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH--
Confidence 35667777777776543332222 12456666666666553222222 12345555555555554332222210
Q ss_pred CCCEEEccCCcCCCCccccc-cCCCCCCeeeccccCCCCC---ChhHHhhcCcCCcEEeccCccCCCC----chhHhhcC
Q 012260 247 NLLKLDLSSNVCSGKIPESL-GHLKSLEFMDLSFNGFGNF---GVPTFLAEMDKLREVYLSGNFLGGE----IPEIWESL 318 (467)
Q Consensus 247 ~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l 318 (467)
.+ ...++|++|+|++|.++.. .++..+...++|++|+|++|.+++. ++..+...
T Consensus 149 ------------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 149 ------------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp ------------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred ------------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 01 1233444444444444320 1222334455555555555555432 23344455
Q ss_pred CCCcEEeccCCCCCCC----CchHHHhcccCCCEEeccCCCCCCCCchhh
Q 012260 319 GGIVGIGLSGTGLVGK----IPASMGIHLKKLSYLSLDNNKLQGNVPEEF 364 (467)
Q Consensus 319 ~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 364 (467)
++|++|+|++|.+++. +...+. ..++|++|+|++|.+++.-...+
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~-~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAR-EHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHH-HCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHH-hCCCCCEEeccCCCCCHHHHHHH
Confidence 5666666666666532 122222 34666666666666654433333
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=5.9e-14 Score=138.89 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=102.2
Q ss_pred CCccEEEcccCCCcccccchhhcC-----CCCCCEEEeecCCCCCCccccc-CCCCCCCEEEccCCcCCCcccccc----
Q 012260 149 SSLEELVFIDNPSFVGPLGGIIGS-----FTNLRRLVLTGNGVYGGIPDKV-GDLVGLEEITLSRNKLSGGFSFSL---- 218 (467)
Q Consensus 149 ~~L~~L~L~~n~~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l---- 218 (467)
++|++|++++| .++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 67888888888 776644443332 2689999999998865433333 345688999999998875544443
Q ss_pred -cCCCCCCEEeccCCcCCCC----chhhhhCCCCCCEEEccCCcCCCC----ccccccCCCCCCeeeccccCCCCC---C
Q 012260 219 -DKLKKLRILDLSQNQFDGN----VPEEMGNLTNLLKLDLSSNVCSGK----IPESLGHLKSLEFMDLSFNGFGNF---G 286 (467)
Q Consensus 219 -~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~---~ 286 (467)
...++|++|++++|.++.. ++..+...++|++|+|++|.++.. ++..+...++|++|++++|.++.. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2467888888888887642 344456677788888888776532 233444555566666666665431 1
Q ss_pred hhHHhhcCcCCcEEeccCccCCCCchhHh
Q 012260 287 VPTFLAEMDKLREVYLSGNFLGGEIPEIW 315 (467)
Q Consensus 287 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 315 (467)
+...+...++|++|+|++|.+++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 12223344555555555555554333333
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=1.9e-12 Score=126.74 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=49.2
Q ss_pred EEccCC-cCCCCccccccCCCCCCeeeccc-cCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccC
Q 012260 251 LDLSSN-VCSGKIPESLGHLKSLEFMDLSF-NGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSG 328 (467)
Q Consensus 251 L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 328 (467)
++++++ +++ .+|. +..+++|++|+|++ |++++ ..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 454 3444 55555555555553 55554 2334445555555555555555555554555555555555555
Q ss_pred CCCCCCCchHHHhcccCCCEEeccCCCCC
Q 012260 329 TGLVGKIPASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 329 N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
|+|+ .+|...+..+ .|+.|+|.+|++.
T Consensus 90 N~l~-~~~~~~~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALE-SLSWKTVQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp SCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred Cccc-eeCHHHcccC-CceEEEeeCCCcc
Confidence 5554 3333332122 2555555555444
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.20 E-value=2.2e-10 Score=114.23 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=68.2
Q ss_pred ccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcc
Q 012260 264 ESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHL 343 (467)
Q Consensus 264 ~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 343 (467)
..+..+..|+.+.+..+...- ....+..+..++.+....+.+. ...|..+.+|+.+.+..+ ++ .|+...+.++
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c 319 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESC 319 (394)
T ss_dssp STTTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTC
T ss_pred ccccccccceeEEcCCCccee--eccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCC
Confidence 344555566666555443211 1223344555555555443321 234556667777776543 44 4554444466
Q ss_pred cCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCC
Q 012260 344 KKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGN 403 (467)
Q Consensus 344 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~N 403 (467)
++|+.+++.++ ++..-..+|.+|.+|+.+++..| ++ .++...+.....++.+++..+
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 77777777543 54344556777777777777655 44 455444433333356666443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=2.1e-09 Score=107.05 Aligned_cols=139 Identities=9% Similarity=0.048 Sum_probs=81.7
Q ss_pred cccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCC
Q 012260 110 STLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGG 189 (467)
Q Consensus 110 g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 189 (467)
..|....|.++.+|+.+.+.++.-.....|....|.++ .+|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...
T Consensus 76 t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 76 TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc--cceehhhhhhhhcccccccccce-eeee
Confidence 34556667888888888877653222225665555666 67777766553 33333356677788888887643 3344
Q ss_pred cccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccC
Q 012260 190 IPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSS 255 (467)
Q Consensus 190 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 255 (467)
....|.++.+|+.+.+..+ ++..-..+|.+ .+|+.+.+..+-.. .....|.++.+++......
T Consensus 152 ~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDS 214 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECC
T ss_pred cccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccc
Confidence 4566777778888777654 33233334443 56777777654322 3344556666666655443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=2e-10 Score=112.68 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred hcCCCCCCEEEeecCCCC---------CCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchh
Q 012260 170 IGSFTNLRRLVLTGNGVY---------GGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPE 240 (467)
Q Consensus 170 l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 240 (467)
..++++|+.|.+..+... +.+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 344556666666543221 112233344556666666554211 1121 2 255666666666655433333
Q ss_pred hhh--CCCCCCEEEcc
Q 012260 241 EMG--NLTNLLKLDLS 254 (467)
Q Consensus 241 ~l~--~l~~L~~L~L~ 254 (467)
.+. .+++|++|+|+
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 333 45666666654
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.08 E-value=7.2e-10 Score=110.44 Aligned_cols=254 Identities=13% Similarity=0.022 Sum_probs=168.4
Q ss_pred CcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCC--------------------Ccccccch
Q 012260 109 NSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNP--------------------SFVGPLGG 168 (467)
Q Consensus 109 ~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~--------------------~l~~~~p~ 168 (467)
...|....|.++++|+.+++.++ +. .|+...|.++ .+|+.+.+..+- .....-..
T Consensus 82 i~~I~~~aF~~c~~L~~i~lp~~-l~---~I~~~aF~~c-~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~ 156 (394)
T 4fs7_A 82 VREIGEFAFENCSKLEIINIPDS-VK---MIGRCTFSGC-YALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDE 156 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CC---EECTTTTTTC-TTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTT
T ss_pred ccCcchhHhhCCCCCcEEEeCCC-ce---Eccchhhccc-ccchhhcccCceeeecceeeecccccccccCccccccchh
Confidence 44567777888899999988654 22 3444443444 445444433210 11111124
Q ss_pred hhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCc---------------
Q 012260 169 IIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQ--------------- 233 (467)
Q Consensus 169 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~--------------- 233 (467)
.|.++++|+.+.+..+- .......|.++.+|+.+++..+ ++.....+|.++..|+.+.+..+.
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 57778888888886543 3444567777888888877655 333334455555555555544332
Q ss_pred ------CCCCchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccC
Q 012260 234 ------FDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFL 307 (467)
Q Consensus 234 ------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 307 (467)
++..-...+.++..|+.+.+..+... .....|..+..++.+....+.+.. ..+..+.+|+.+.+.++ +
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEECTT-C
T ss_pred EEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc----ccccccccccccccccc-c
Confidence 12122334666778888888766433 455678888999998887665433 34677889999999765 6
Q ss_pred CCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCC
Q 012260 308 GGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENN 378 (467)
Q Consensus 308 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 378 (467)
+.....+|.++++|+.+++..+ ++ .|....+.++++|+.+++..+ ++..-..+|.+|++|+.+++..+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6566678999999999999754 66 676666658999999999877 66566678999999999998754
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.02 E-value=2.5e-10 Score=94.94 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=67.1
Q ss_pred CEEeccCCCCC-CCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCCCCCCcCcccccCCCCCC----C
Q 012260 347 SYLSLDNNKLQ-GNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGNPDLCIDEKFSIGKNASG----S 421 (467)
Q Consensus 347 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~Np~~C~c~~~~~~~~~~~----~ 421 (467)
..++.+++.++ ..+|..+. ++|++|+|++|+|+ .+|...+.....++.++|++|||.|+|++.||.++... .
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~ 87 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence 36777888776 34554432 36888888888888 67766554444458899999999999999887664322 2
Q ss_pred CCCcccCCCCCCCccccccccc
Q 012260 422 IGQLKLCKKPDNPKAAMFSDAT 443 (467)
Q Consensus 422 ~~~~~~C~~p~~~~g~~~~d~~ 443 (467)
......|++|+.++|..+.++.
T Consensus 88 ~~~~~~C~~P~~l~g~~l~~l~ 109 (130)
T 3rfe_A 88 PYRDLRCVAPPALRGRLLPYLA 109 (130)
T ss_dssp GGTTCBCCBSTTTTTCBGGGCC
T ss_pred cccCcEeCcChHHcCCCcccCC
Confidence 2345799999999997666554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=4.8e-10 Score=110.05 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=97.2
Q ss_pred chhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhh--cCcCCcEEeccC--ccCCCC---
Q 012260 238 VPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLA--EMDKLREVYLSG--NFLGGE--- 310 (467)
Q Consensus 238 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~--~l~~L~~L~L~~--n~l~~~--- 310 (467)
+...+..+|+|+.|++++|.-. .++. + .+++|+.|++..+.++. .....+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 4455566677777777666311 2222 3 26777788877777655 2223333 577788887753 221111
Q ss_pred --chhHh--hcCCCCcEEeccCCCCCCCCchHHHh--cccCCCEEeccCCCCCCC----CchhhhCCCCCCEEEccCCcc
Q 012260 311 --IPEIW--ESLGGIVGIGLSGTGLVGKIPASMGI--HLKKLSYLSLDNNKLQGN----VPEEFGVLEFVGEINLENNNL 380 (467)
Q Consensus 311 --~p~~~--~~l~~L~~L~Ls~N~l~~~ip~~~~~--~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 380 (467)
+...+ ..+++|++|+|++|.+.+..+..+.. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11112 24688999999888887544444442 367899999999988764 333445678899999999988
Q ss_pred cccCCCCcccccc-cCCeeeecCCC
Q 012260 381 SGRVPFSAKFSTK-VGEKLKLKGNP 404 (467)
Q Consensus 381 ~g~ip~~~~~~~~-~~~~l~l~~Np 404 (467)
+... ...... +...+++++|+
T Consensus 320 ~d~~---~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEM---KKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp CHHH---HHHHHHHCCSEEECCSBC
T ss_pred CHHH---HHHHHHHcCCEEEecCCc
Confidence 7432 211221 23567888877
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.99 E-value=9.5e-09 Score=102.26 Aligned_cols=278 Identities=12% Similarity=0.142 Sum_probs=184.2
Q ss_pred ccChhhhhcCC-CCceEecccccCCCCcCCCCCCCccccCCccEEEcccCC--CcccccchhhcCCCCCCEEEeecCCCC
Q 012260 111 TLNPLIFTSFK-HLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNP--SFVGPLGGIIGSFTNLRRLVLTGNGVY 187 (467)
Q Consensus 111 ~l~~~~f~~l~-~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~--~l~~~~p~~l~~l~~L~~L~L~~n~l~ 187 (467)
.|....|.+++ .|+++.+-+. +. .|.+..|.++ ++|+.+.+..|. .++..-..+|.++.+|+.+.+..+ ++
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt---~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VT---EIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CC---EECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred EcCHhhccCCCCcCEEEEECCC-ee---EEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence 35555677775 5899888653 33 5767666888 999999998761 233333457888899998887654 54
Q ss_pred CCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCCCCcccccc
Q 012260 188 GGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCSGKIPESLG 267 (467)
Q Consensus 188 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 267 (467)
......|.++.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++..-...|. ...|+.+.+..+.. ..-...|.
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~ 202 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFS 202 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTT
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhh
Confidence 555678889999999999754 44355668888999999999765 4433334454 46799988866532 23345566
Q ss_pred CCCCCCeeeccccCCC---------------------------CCChh--------HHhhcCcCCcEEeccCccCCCCch
Q 012260 268 HLKSLEFMDLSFNGFG---------------------------NFGVP--------TFLAEMDKLREVYLSGNFLGGEIP 312 (467)
Q Consensus 268 ~l~~L~~L~Ls~n~l~---------------------------~~~~p--------~~~~~l~~L~~L~L~~n~l~~~~p 312 (467)
.+.+++......+... .+.+| ..|.++..|+.+.+.++..+ ...
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~ 281 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGT 281 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECT
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecC
Confidence 6666665544322110 00112 24566777888887655332 445
Q ss_pred hHhhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCccccc
Q 012260 313 EIWESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFST 392 (467)
Q Consensus 313 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 392 (467)
..|.++++|+.+.+. +.++ .++...+.++.+|+.+++..+ ++.+-..+|.+|.+|+.+.+..+ ++ .|....+...
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C 356 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNC 356 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTC
T ss_pred cccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCC
Confidence 567778888888885 4455 677666667888999888765 55455567888888998888654 55 6666555444
Q ss_pred ccCCeeeecCCC
Q 012260 393 KVGEKLKLKGNP 404 (467)
Q Consensus 393 ~~~~~l~l~~Np 404 (467)
..++.+++.+|.
T Consensus 357 ~~L~~i~~~~~~ 368 (394)
T 4gt6_A 357 TALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEESSCH
T ss_pred CCCCEEEECCce
Confidence 444788887765
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=3.1e-07 Score=90.67 Aligned_cols=262 Identities=12% Similarity=0.083 Sum_probs=127.0
Q ss_pred ceeEEEecCCCCCCCCCCCCCCCcccChhhhhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCccccc
Q 012260 87 VHITELSFGYVSDYSPNPPCNANSTLNPLIFTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPL 166 (467)
Q Consensus 87 ~~v~~L~L~~~~~~~~~~~~~~~g~l~~~~f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~ 166 (467)
.+++++.+. .....|+...|.++.+|+.++|.++ +. .|+...|.++ +|+.+.+..+ ++..-
T Consensus 46 ~~i~~v~ip-----------~~vt~Ig~~aF~~C~~L~~I~lp~~-v~---~Ig~~aF~~c--~l~~i~~~~~--l~~I~ 106 (379)
T 4h09_A 46 DRISEVRVN-----------SGITSIGEANFNSCYNMTKVTVAST-VT---SIGDGAFADT--KLQSYTGMER--VKKFG 106 (379)
T ss_dssp GGCSEEEEC-----------TTEEEECTTTTTTCTTCCEEEECTT-CC---EECTTTTTTC--CCCEEEECTT--CCEEC
T ss_pred cCCEEEEeC-----------CCccChHHHHhhCCCCCCEEEeCCc-ce---EechhhhcCC--CCceEECCce--eeEec
Confidence 356666665 2245677788899999999998654 33 5666665554 5777766543 33222
Q ss_pred chhhcCCCCCCEEEeecCCCCCCcccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCC----------
Q 012260 167 GGIIGSFTNLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDG---------- 236 (467)
Q Consensus 167 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------- 236 (467)
...|.+ .+|+.+.+..+ +.......|.+. +++.+.+.. .++......+.++.+++.+.+..+....
T Consensus 107 ~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
T 4h09_A 107 DYVFQG-TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNK 182 (379)
T ss_dssp TTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEET
T ss_pred cceecc-CCcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceeccc
Confidence 234444 47888888654 222223344443 455554433 2333334455666666666655433211
Q ss_pred --CchhhhhCCCCCCEEEccCCcCCCCccccccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhH
Q 012260 237 --NVPEEMGNLTNLLKLDLSSNVCSGKIPESLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEI 314 (467)
Q Consensus 237 --~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 314 (467)
.....+.....+..+.+.... .......+..+.+|+.+.+..+ +.. -....+.++..|+.+.+..+ ++......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~-i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 183 NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTT-LGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCE-ECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeE-EccccccCCccceEEEcCCC-ccEeCccc
Confidence 111122233334444333221 1122233444455555554332 111 01123344455555555443 33233344
Q ss_pred hhcCCCCcEEeccCCCCCCCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccC
Q 012260 315 WESLGGIVGIGLSGTGLVGKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLEN 377 (467)
Q Consensus 315 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 377 (467)
|.++.+|+.+.+..+ +. .++...+..+++|+.+.+.++.++..-...|.+|.+|+.+.|..
T Consensus 259 F~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred cceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 455555555555432 32 33333333455555555555555433344555555555555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.71 E-value=5.3e-10 Score=104.45 Aligned_cols=80 Identities=30% Similarity=0.361 Sum_probs=46.9
Q ss_pred cCCCCCCEEEeecCCCCC--CcccccCCCCCCCEEEccCCcCCCcccccccCCC--CCCEEeccCCcCCCCch-------
Q 012260 171 GSFTNLRRLVLTGNGVYG--GIPDKVGDLVGLEEITLSRNKLSGGFSFSLDKLK--KLRILDLSQNQFDGNVP------- 239 (467)
Q Consensus 171 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p------- 239 (467)
.++++|++|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777766 3345555667777777777776654 2222222 66666666666654433
Q ss_pred hhhhCCCCCCEEE
Q 012260 240 EEMGNLTNLLKLD 252 (467)
Q Consensus 240 ~~l~~l~~L~~L~ 252 (467)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.8e-08 Score=87.91 Aligned_cols=88 Identities=8% Similarity=0.112 Sum_probs=45.2
Q ss_pred cCcCCcEEeccCccCCCC----chhHhhcCCCCcEEeccCCCCCCC----CchHHHhcccCCCEEec--cCCCCCCC---
Q 012260 293 EMDKLREVYLSGNFLGGE----IPEIWESLGGIVGIGLSGTGLVGK----IPASMGIHLKKLSYLSL--DNNKLQGN--- 359 (467)
Q Consensus 293 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~L--s~N~l~~~--- 359 (467)
..++|++|+|++|.+.+. +...+...++|++|+|++|.+... +...+. ..++|++|+| ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHH
Confidence 334455555555544421 222333445555555555555532 122222 3456666666 56666532
Q ss_pred -CchhhhCCCCCCEEEccCCccc
Q 012260 360 -VPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 360 -~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
+...+...++|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455567777777777764
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=2.1e-06 Score=84.57 Aligned_cols=267 Identities=8% Similarity=-0.007 Sum_probs=175.2
Q ss_pred hhcCCCCceEecccccCCCCcCCCCCCCccccCCccEEEcccCCCcccccchhhcCCCCCCEEEeecCCCCCCcccccCC
Q 012260 117 FTSFKHLRKLFFYKCFTEKQVPVPDNIPASFGSSLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNGVYGGIPDKVGD 196 (467)
Q Consensus 117 f~~l~~L~~L~L~~~~~~~~~~ip~~l~~~l~~~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 196 (467)
|....+|+.+.+... ++ .|++..|.++ .+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +......+|..
T Consensus 42 ~~~~~~i~~v~ip~~-vt---~Ig~~aF~~C-~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT---SIGEANFNSC-YNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp GGGGGGCSEEEECTT-EE---EECTTTTTTC-TTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred cccccCCEEEEeCCC-cc---ChHHHHhhCC-CCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceecc
Confidence 456677888888653 22 6777776888 89999999754 544334567776 6888887643 44444455655
Q ss_pred CCCCCEEEccCCcCCCcccccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEccCCcCC------------CCccc
Q 012260 197 LVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDLSSNVCS------------GKIPE 264 (467)
Q Consensus 197 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------~~~p~ 264 (467)
. +|+.+.+..+ ++.....+|.+. +|+.+.+..+ ++......+..+..++.+.+..+... .....
T Consensus 113 ~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 T-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp C-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred C-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence 4 7999998764 332333445443 6777766554 44344556778888888887654332 12223
Q ss_pred cccCCCCCCeeeccccCCCCCChhHHhhcCcCCcEEeccCccCCCCchhHhhcCCCCcEEeccCCCCCCCCchHHHhccc
Q 012260 265 SLGHLKSLEFMDLSFNGFGNFGVPTFLAEMDKLREVYLSGNFLGGEIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLK 344 (467)
Q Consensus 265 ~~~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 344 (467)
.+.....+..+.+....-. .....+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++ .+....+..+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~--i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~ 263 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT--VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCT 263 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE--ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCT
T ss_pred cccccccccccccccceeE--Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceee
Confidence 3445555666555433211 12334566788898888665 44455667888999999999765 55 56655555889
Q ss_pred CCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCcccccCCCCcccccccCCeeeecCC
Q 012260 345 KLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLSGRVPFSAKFSTKVGEKLKLKGN 403 (467)
Q Consensus 345 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~l~l~~N 403 (467)
+|+.+.+..+ ++......|.++.+|+.+.+.++.++ .|+...+.....++.+++.++
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT
T ss_pred hhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc
Confidence 9999999765 55455578899999999999999888 677665544444477877544
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=5.3e-08 Score=86.14 Aligned_cols=88 Identities=10% Similarity=0.153 Sum_probs=43.2
Q ss_pred CCCCCeeeccccCCCCC---ChhHHhhcCcCCcEEeccCccCCCC----chhHhhcCCCCcEEec--cCCCCCCCC----
Q 012260 269 LKSLEFMDLSFNGFGNF---GVPTFLAEMDKLREVYLSGNFLGGE----IPEIWESLGGIVGIGL--SGTGLVGKI---- 335 (467)
Q Consensus 269 l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~i---- 335 (467)
.++|++|+|++|.+... .+...+...++|++|+|++|.+++. +...+...+.|++|+| ++|.+....
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 34444444444444320 1223334445566666666655532 2334444556666666 556665322
Q ss_pred chHHHhcccCCCEEeccCCCCC
Q 012260 336 PASMGIHLKKLSYLSLDNNKLQ 357 (467)
Q Consensus 336 p~~~~~~l~~L~~L~Ls~N~l~ 357 (467)
...+. ..++|++|+|++|.+.
T Consensus 144 ~~~L~-~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLE-KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH-HCSSCCEEECCCSSHH
T ss_pred HHHHH-hCCCcCEEeccCCCCC
Confidence 22222 3456777777776654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=8e-08 Score=89.66 Aligned_cols=80 Identities=23% Similarity=0.237 Sum_probs=46.1
Q ss_pred hcCcCCcEEeccCccCCC--CchhHhhcCCCCcEEeccCCCCCCCCchHHHhccc--CCCEEeccCCCCCCCCc------
Q 012260 292 AEMDKLREVYLSGNFLGG--EIPEIWESLGGIVGIGLSGTGLVGKIPASMGIHLK--KLSYLSLDNNKLQGNVP------ 361 (467)
Q Consensus 292 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~--~L~~L~Ls~N~l~~~~p------ 361 (467)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+. .++ +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-KIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-GGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-hcccCCcceEEccCCcCccccCcchhHH
Confidence 345666666666666665 3345556666666666666666632 1122 233 66666666666665443
Q ss_pred -hhhhCCCCCCEEE
Q 012260 362 -EEFGVLEFVGEIN 374 (467)
Q Consensus 362 -~~~~~l~~L~~L~ 374 (467)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2345566666664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=5.4e-06 Score=71.86 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=45.0
Q ss_pred CccEEEcccCCCcccccchhhcCCCCCCEEEeecCC-CCCCcccccCCC----CCCCEEEccCCc-CCCcccccccCCCC
Q 012260 150 SLEELVFIDNPSFVGPLGGIIGSFTNLRRLVLTGNG-VYGGIPDKVGDL----VGLEEITLSRNK-LSGGFSFSLDKLKK 223 (467)
Q Consensus 150 ~L~~L~L~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 223 (467)
+|++||++++ .++..--..+.++++|++|+|++|. ++..--..++.+ ++|++|++++|. ++..--..+..+++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 5777777777 5655444455666667777776663 443333333332 246666666553 44333334445555
Q ss_pred CCEEeccCCc
Q 012260 224 LRILDLSQNQ 233 (467)
Q Consensus 224 L~~L~L~~n~ 233 (467)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555553
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=8e-06 Score=70.78 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCCEEEeecCCCCCCcccccCCCCCCCEEEccCCc-CCCcccccccCC----CCCCEEeccCCc-CCCCchhhhhCCCCC
Q 012260 175 NLRRLVLTGNGVYGGIPDKVGDLVGLEEITLSRNK-LSGGFSFSLDKL----KKLRILDLSQNQ-FDGNVPEEMGNLTNL 248 (467)
Q Consensus 175 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L 248 (467)
+|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|++++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665554444445556666666666653 443322333333 246666666553 443333344555666
Q ss_pred CEEEccCCc
Q 012260 249 LKLDLSSNV 257 (467)
Q Consensus 249 ~~L~L~~n~ 257 (467)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666665553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00028 Score=62.24 Aligned_cols=90 Identities=9% Similarity=0.097 Sum_probs=45.0
Q ss_pred hcCcCCcEEeccCccCCC----CchhHhhcCCCCcEEeccCCCCCCCCchHHHh---cccCCCEEeccCCCC---CC---
Q 012260 292 AEMDKLREVYLSGNFLGG----EIPEIWESLGGIVGIGLSGTGLVGKIPASMGI---HLKKLSYLSLDNNKL---QG--- 358 (467)
Q Consensus 292 ~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~---~l~~L~~L~Ls~N~l---~~--- 358 (467)
..-..|+.|+|++|++.+ .+.+.+..-+.|++|+|+.|.|...--..+.. .-+.|++|+|++|.. ..
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 334455555555555542 22333444455666666666655322222221 234577777765432 21
Q ss_pred -CCchhhhCCCCCCEEEccCCccc
Q 012260 359 -NVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 359 -~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
.+...+..-++|+.|+++.|.+.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhCCCcCeEeccCCCcc
Confidence 13344555567777777766543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.12 E-value=0.00047 Score=60.74 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=5.0
Q ss_pred cCCCEEeccCC
Q 012260 344 KKLSYLSLDNN 354 (467)
Q Consensus 344 ~~L~~L~Ls~N 354 (467)
+.|+.|+++.|
T Consensus 157 ~tL~~L~l~~~ 167 (197)
T 1pgv_A 157 ESLLRVGISFA 167 (197)
T ss_dssp SSCCEEECCCC
T ss_pred CCcCeEeccCC
Confidence 34444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.00098 Score=54.73 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=34.1
Q ss_pred EEeccCCCCC-CCCchHHHhcccCCCEEeccCCCCCCCCchhhhCCCCCCEEEccCCccc
Q 012260 323 GIGLSGTGLV-GKIPASMGIHLKKLSYLSLDNNKLQGNVPEEFGVLEFVGEINLENNNLS 381 (467)
Q Consensus 323 ~L~Ls~N~l~-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 381 (467)
.++.++++++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 3455432 245667777777776555556666677777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.69 E-value=58 Score=24.42 Aligned_cols=38 Identities=18% Similarity=0.048 Sum_probs=15.9
Q ss_pred cccccCCCCCCEEeccCCcCCCCchhhhhCCCCCCEEEc
Q 012260 215 SFSLDKLKKLRILDLSQNQFDGNVPEEMGNLTNLLKLDL 253 (467)
Q Consensus 215 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 253 (467)
..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 334444444444444432 22222333444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.47 E-value=80 Score=23.62 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=17.8
Q ss_pred ccccCCCCCCCEEEccCCcCCCcccccccCCCCCCEEecc
Q 012260 191 PDKVGDLVGLEEITLSRNKLSGGFSFSLDKLKKLRILDLS 230 (467)
Q Consensus 191 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 230 (467)
...|.++.+|+.+.+-.+ ++..-..+|.++.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344555555555544432 222333345555555555443
Done!