BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012261
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 243 KVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 297
K+ GYG+TE+ PV+A A+ P G+ G + + E+KIVD +T + L G
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431
Query: 298 VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 328
+ +RG Q+M+GY NP+AT + +D+DGWL+T
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 247 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 301
GYG+TE+ PV+A A+ P G+ G + + E+KIVD ET LP G + +R
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
Query: 302 GSQVMQGYFKNPSATKQALDEDGWLNTG 329
G Q+M+GY +P AT + +D++GWL+TG
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKEGWLHTG 416
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
++ GYGLTE++ I + G+VG + E K+VD +T + L +G + VRG
Sbjct: 341 IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGP 400
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
+M GY NP AT +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 224 SGGGSLPMHIDLFYEAIGVK-----VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
SGG L + EA+ + ++ GYGLTE++ I + G+VG + E
Sbjct: 314 SGGAPLSKEVG---EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 370
Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
K+VD +T + L +G + VRG +M GY NP AT +D+DGWL++GDI +
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 224 SGGGSLPMHIDLFYEAIGVK-----VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 278
SGG L + EA+ + ++ GYGLTE++ I + G+VG + E
Sbjct: 314 SGGAPLSKEVG---EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 370
Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
K+VD +T + L +G + VRG +M GY NP AT +D+DGWL++GDI +
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
++ GYGLTE++ I + G+VG + E K+VD +T + L +G + VRG
Sbjct: 341 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 400
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
+M GY NP AT +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
V+ GYGLTE++ I + G+ G + + K++D +T + L +G V V+G
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
+M+GY NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
V+ GYGLTE++ I + G+ G + + K++D +T + L +G V V+G
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
+M+GY NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 244 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
V+ GYGLTE++ I + G+ G + + K++D +T + L +G V V+G
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 304 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
+M+GY NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 244 VQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
++ GYGLTE+ S +I R + G+ G + KIVD +T + L +G + V+G
Sbjct: 370 IRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKG 429
Query: 303 SQVMQGYFKNPSATKQALDEDGWLNTGDIGW 333
+M+GY NP AT +D+DGWL++GDI +
Sbjct: 430 PMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA-----------ARRPTCNVLGSVG 271
V GG + P + +E +GV+V+ GYGLTE+SPV+ + + G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 272 HPINHTEIKIVDAETNEVLPAGSK-GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 330
PI +++ D E V G G V+++G + GY+ N AT+ AL DG+ TGD
Sbjct: 359 LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 331 IG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVI 389
I W + + ++ R KD ++ S GE + +++ V+
Sbjct: 419 IAVWDEEGY-----------VEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 390 G----QDQRRPGAIIVPDKEE 406
+ Q RP A++VP E+
Sbjct: 467 AIPHPKWQERPLAVVVPRGEK 487
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
GS P+ D E G V YG TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 343
ET + LP G G ++V+G V +GY++ P TK +DG+ TGD+G I
Sbjct: 336 PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKI--------- 386
Query: 344 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AI 399
V +L GR KD +V++ G NV P + + VIG G A+
Sbjct: 387 DERGYVHIL-GRGKD-LVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 400 IVPDKEEVLMAAKRLSIVHADASELSKEK 428
+V DK + A+ ++H +L+K K
Sbjct: 445 VVRDKGATIDEAQ---VLHGLDGQLAKFK 470
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 280
++GG +P + Y A ++V GY LTES + GS G T++
Sbjct: 290 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349
Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXX 340
+ + V+ +G V ++ +++ Y+ P AT+ A D +GW TGDIG I
Sbjct: 350 VRG--DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGY- 405
Query: 341 XXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG--- 397
L ++ R KD I+ S GENV P + ++ VIG + G
Sbjct: 406 ---------LYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 398 -AIIVPDKEEV 407
AI+V D+ EV
Sbjct: 456 AAIVVADQNEV 466
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 201 HLLAEKL-VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 258
H +AE L ++ A+ ++ VSG +LP+H + A G +V YG+TE+ +
Sbjct: 255 HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314
Query: 259 ARRPTCNVLGSVGHPINHTEIKIVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSAT 316
R G+VG P+ E+++V+ + + L S G ++VRG + Y P AT
Sbjct: 315 VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 317 KQALDEDGWLNTGDI 331
A EDG+ TGD+
Sbjct: 375 AAAFTEDGFFRTGDM 389
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
GS P+ D E G V YG+TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
ET LP G G+++V G V GY++ P T +DG+ TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
GS P+ D E G V YG+TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
ET LP G G+++V G V GY++ P T +DG+ TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 227 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 283
GS P+ D E G V YG+TE++ + V G+VG + ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 284 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
ET LP G G+++V G V GY++ P T +DG+ TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 269 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 328
S G P+ + +VDAE + LP G G + +RG V +GY+ N +AT+ A +GW +T
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHT 379
Query: 329 GDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST-GENVEPXXXXXXXXRSSLIRQIV 387
GD+G L GRA + ++ T GENV P + I V
Sbjct: 380 GDMGRF----------DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429
Query: 388 VIG 390
VIG
Sbjct: 430 VIG 432
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
G KV GYG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVN-GYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAXNSLYXRQPKT---GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DXII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 225 GGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN--VLGSVGHPIN-HTEIK 280
GG S P + E + K+Q +G+ E V R + + + G PI+ EIK
Sbjct: 315 GGASFPESLARQVPEVLNCKLQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPISSDDEIK 373
Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
IVD + EV P G G++ RG GY+++P Q DED + +GD+ P
Sbjct: 374 IVDEQYREV-PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
G KV + YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVP 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 298
G KV YG TE+ + R+P G+ P +E++IV +E++ G +G +
Sbjct: 298 GEKVN-AYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 299 KVRGSQ-VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 357
V S GY P AT + L +DGW T D+ P V +L GR
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 358 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 410
D I+ S GEN+ P + + ++VVIG +R G A +VP E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 223 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 280
++GG +P + Y A ++V GY LTES + GS G T++
Sbjct: 276 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 335
Query: 281 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 334
+ + V+ +G V ++ +++ Y+ P AT+ A D +GW TGDIG I
Sbjct: 336 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 386
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 248 YGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 306
+G TE+ P + P + + G P + E+K++ E L G G + +RG +
Sbjct: 335 WGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394
Query: 307 QGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVL 362
+GY+K ++ DE G + TGD+G+I L + R K+ I
Sbjct: 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE----------GFLHFQDRVKEVIKY 444
Query: 363 STGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS 422
G + P + + + VIG+ G VP VL R + D
Sbjct: 445 K-GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE--VPKAFIVLKPEYRGKVDEEDII 501
Query: 423 ELSKEK 428
E +E+
Sbjct: 502 EWVRER 507
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 240 IGVKVQVGYGLTESSPVIAARR---PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSK 295
IG ++Q +G+ E ++ R ++ + G+P+ E+ + DAE N LP G
Sbjct: 326 IGCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP-LPQGEV 382
Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 355
G + RG +GY+K+P A D +G+ +GD+ I P + ++GR
Sbjct: 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE----------GYITVQGR 432
Query: 356 AKDTI 360
KD I
Sbjct: 433 EKDQI 437
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 221 AGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 280
A V+G P + F E G+K+ G+G TE+ IA GS+G P +I+
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIE 405
Query: 281 IVDAETN--EVLPAGSKGIVKVRGSQV--MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 336
++D + EV G I + G V Y K+P T++ DG+ +TGD+ W+
Sbjct: 406 LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM-- 462
Query: 337 HHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRP 396
L GRA D I+ ++G V P + + + + G
Sbjct: 463 --------DEDGYLWFVGRADD-IIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVR 513
Query: 397 GAII 400
G +I
Sbjct: 514 GQVI 517
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 14/172 (8%)
Query: 223 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 281
S G +LP I + F G ++ G G TE + + R G+ G P+ EI++
Sbjct: 306 TSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIEL 365
Query: 282 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXX 341
D E +P G G + ++G Y+ N ++ + W+ +GD P+
Sbjct: 366 RD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPN---- 419
Query: 342 XXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 393
V GR+ D + +S G+ V P + + + V+G D
Sbjct: 420 ------GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 229 LPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE 288
LP ++ + G+ ++ YG TE+ + G +G + +++I+D + N
Sbjct: 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN- 393
Query: 289 VLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 343
VLP G++G + +R + GY NP T + D WL GD G
Sbjct: 394 VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG----------I 442
Query: 344 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPD 403
GRA D I+ S+G + P + + VI G ++
Sbjct: 443 KDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV--- 498
Query: 404 KEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 439
K V++A++ LS D +L+KE K+++ Y RK
Sbjct: 499 KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 29/221 (13%)
Query: 229 LPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNE 288
LP ++ + G+ ++ YG TE+ + G +G + +++I+D + N
Sbjct: 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGN- 393
Query: 289 VLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 343
VLP G++G + +R + GY NP T + D WL GD G
Sbjct: 394 VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG----------I 442
Query: 344 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPD 403
GRA D I+ S+G + P + + VI G ++
Sbjct: 443 KDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV--- 498
Query: 404 KEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 439
K V++A++ LS D +L+KE K+++ Y RK
Sbjct: 499 KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 262 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 320
P ++ + G P++ + E ++ D +V P G G + RG ++GY+K +
Sbjct: 345 PEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 321 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 360
EDG+ TGDI +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 262 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 320
P ++ + G P + + E ++ D +V P G G + RG ++GY+K +
Sbjct: 345 PEEIIVNTQGKPXSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 321 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 360
EDG+ TGDI +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 235 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEV 289
LF K+ YG TE++ ++A T ++ + +G+P + I+D + E
Sbjct: 284 LFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKE- 342
Query: 290 LPAGSKGIVKVRGSQVMQGYFKNPSATKQA---LDEDGWLNTGDIG 332
L +G +G + V G V +GY NP T +A +TGDIG
Sbjct: 343 LSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG 388
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 248 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
YG TE++ + + T +V+ VG I I+D E + LP G KG + + G
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAG 351
Query: 303 SQVMQGYFKNPSATKQAL--DEDGWL-NTGDIGWI 334
V +GY P T++A E W TGD G+I
Sbjct: 352 PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 247 GYGLTESSPVIAARRPTCNVLGS---VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 303
YG TE++ T +G +G PI +T+I IVD E ++ G G + + G
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 380
Query: 304 QVMQGYFKNPSATKQAL---------------DEDGWLNTGDIGWIA 335
+ +GY+K P T Q D+ WL+ G+I ++
Sbjct: 381 GLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 40/153 (26%)
Query: 196 ILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV---KVQVGYGLTE 252
++ P + LAE VY + SK G P +D E++ K G G T
Sbjct: 344 VIRPSYWLAEATVY------VATSKPG-----QPPETVDFDTESLSAGHAKPCAGGGATS 392
Query: 253 SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKN 312
+ R P ++IVD++T P G+ G + V G V GY++
Sbjct: 393 LISYMLPRSPI---------------VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQK 437
Query: 313 PSATKQALD-----------EDGWLNTGDIGWI 334
P +++ E WL TGD G++
Sbjct: 438 PDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV 470
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 237 YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKG 296
Y + G+ LT + ++ AR T VG P + ++KI + G
Sbjct: 302 YNSFGMTETCSQFLTATPEMLHARPDT------VGMPSANVDVKIKNPNKE------GHG 349
Query: 297 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRA 356
+ ++G+ VM GY T E+G+ NTGDI I +++ R
Sbjct: 350 ELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDIAEI----------DHEGYVMIYDRR 397
Query: 357 KDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQ 391
KD +++S GEN+ P + I V +G
Sbjct: 398 KD-LIISGGENIYPYQIETVAKQFPGISDAVCVGH 431
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 279 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 327
++IVD++T P G+ G + V G V GY++ P +++ E WL
Sbjct: 404 VRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 328 TGDIGWI 334
TGD G++
Sbjct: 464 TGDSGFV 470
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 248 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
YG TE++ + T VL VG+ + + I+ E + P G KG + + G
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM-KEDGTIAPDGEKGEIVIVG 352
Query: 303 SQVMQGYFKNPSATKQA---LDEDGWLNTGDIGWI 334
V GY +P T++A +D + TGD G++
Sbjct: 353 PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 248 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 302
YG TE++ + T VL VG+ + + I+ E + P G KG + + G
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM-KEDGTIAPDGEKGEIVIVG 352
Query: 303 SQVMQGYFKNPSATKQA---LDEDGWLNTGDIGWI 334
V GY +P T++A +D + TGD G++
Sbjct: 353 PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 222 GVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR--PTCNVLGSVGHPINHTEI 279
GV G P ++ + V + YG TE + +A R P + +GHP+ +
Sbjct: 300 GVGGEKXTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDSVA 358
Query: 280 KIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGDI 331
++ +NE + G G + + GS V GY P A K D +G TGDI
Sbjct: 359 HVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDA-KGFCDINGRKXYRTGDI 411
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 296 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 355
G + + G + GYF + ++ + GWL+TGD+G++ + L + GR
Sbjct: 411 GHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYLLDGY-----------LYVTGR 458
Query: 356 AKDTIVLSTGENVEP 370
KD I++ G N+ P
Sbjct: 459 IKDLIIIR-GRNIWP 472
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 14/165 (8%)
Query: 270 VGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 327
+G P+ ++D +++ PA G+ G + V G+ + GY P+ T + D +
Sbjct: 385 IGVPLAGKRAYVLD---DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAG 441
Query: 328 TGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIV 387
G G VL GRA D + + G VEP +RQ
Sbjct: 442 PG--GERMYRTGDLARRRADGVLEYVGRADDQVKIR-GFRVEPGEVEARLVGHPAVRQAA 498
Query: 388 VIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISL 432
V+ QD R + DK+ V + DA+EL + +L
Sbjct: 499 VLAQDSR------LGDKQLVAYVVAERADAPPDAAELRRHVAEAL 537
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,680,474
Number of Sequences: 62578
Number of extensions: 487064
Number of successful extensions: 1040
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 50
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)