Query 012261
Match_columns 467
No_of_seqs 164 out of 1987
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 3.1E-52 1.1E-56 441.9 24.6 322 36-466 155-490 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 6.2E-52 2.1E-56 442.8 27.1 324 36-466 178-525 (536)
3 2d1s_A Luciferase, luciferin 4 100.0 7.1E-52 2.4E-56 443.7 27.0 323 36-466 192-533 (548)
4 3rix_A Luciferase, luciferin 4 100.0 7.2E-52 2.5E-56 443.6 21.0 323 37-466 191-531 (550)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.7E-51 1.3E-55 437.2 26.4 321 37-466 183-521 (539)
6 3nyq_A Malonyl-COA ligase; A/B 100.0 9.3E-51 3.2E-55 430.9 26.7 326 36-466 155-498 (505)
7 3g7s_A Long-chain-fatty-acid-- 100.0 3.4E-51 1.2E-55 438.3 23.4 328 36-466 180-532 (549)
8 3r44_A Fatty acyl COA syntheta 100.0 2.7E-50 9.2E-55 428.4 28.7 320 36-466 170-503 (517)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.2E-50 7.7E-55 427.4 27.5 321 37-466 154-494 (504)
10 1v25_A Long-chain-fatty-acid-C 100.0 7E-51 2.4E-55 435.3 22.0 322 36-466 176-526 (541)
11 1pg4_A Acetyl-COA synthetase; 100.0 5.8E-50 2E-54 437.5 28.4 324 37-466 257-611 (652)
12 3etc_A AMP-binding protein; ad 100.0 7.1E-50 2.4E-54 431.2 28.0 324 36-466 225-569 (580)
13 1amu_A GRSA, gramicidin synthe 100.0 5.7E-50 2E-54 430.4 26.7 314 36-466 182-519 (563)
14 3o83_A Peptide arylation enzym 100.0 1.2E-50 4.2E-55 433.6 19.6 322 36-466 191-530 (544)
15 3e7w_A D-alanine--poly(phospho 100.0 2.1E-49 7.3E-54 420.6 28.5 323 35-466 142-493 (511)
16 4gr5_A Non-ribosomal peptide s 100.0 2.8E-50 9.7E-55 433.1 20.3 321 36-466 214-561 (570)
17 3c5e_A Acyl-coenzyme A synthet 100.0 4.9E-49 1.7E-53 423.8 28.2 326 36-466 206-552 (570)
18 3fce_A D-alanine--poly(phospho 100.0 2.6E-49 8.8E-54 419.9 24.5 322 36-466 144-494 (512)
19 3ipl_A 2-succinylbenzoate--COA 100.0 9.9E-49 3.4E-53 414.1 28.8 311 36-466 163-487 (501)
20 1ry2_A Acetyl-coenzyme A synth 100.0 3.1E-49 1.1E-53 432.5 24.0 333 36-466 262-627 (663)
21 2v7b_A Benzoate-coenzyme A lig 100.0 9.4E-49 3.2E-53 417.2 25.6 325 36-466 183-522 (529)
22 3rg2_A Enterobactin synthase c 100.0 3.2E-48 1.1E-52 421.0 27.5 322 37-466 185-524 (617)
23 3ivr_A Putative long-chain-fat 100.0 3.4E-49 1.2E-53 418.7 18.6 316 37-466 161-491 (509)
24 3l8c_A D-alanine--poly(phospho 100.0 7.5E-49 2.6E-53 417.0 21.3 326 35-466 144-502 (521)
25 4dg8_A PA1221; ANL superfamily 100.0 3.9E-48 1.3E-52 420.7 26.1 314 37-466 165-503 (620)
26 3tsy_A Fusion protein 4-coumar 100.0 1.3E-48 4.4E-53 445.0 19.4 324 36-466 225-572 (979)
27 3kxw_A Saframycin MX1 syntheta 100.0 1.3E-46 4.6E-51 405.2 21.6 327 36-466 167-557 (590)
28 3gqw_A Fatty acid AMP ligase; 100.0 4.9E-46 1.7E-50 399.2 25.1 324 36-466 176-553 (576)
29 3ite_A SIDN siderophore synthe 100.0 2E-46 6.9E-51 402.1 18.0 330 37-466 176-533 (562)
30 2vsq_A Surfactin synthetase su 100.0 4.9E-45 1.7E-49 426.3 31.1 317 37-466 608-950 (1304)
31 4gs5_A Acyl-COA synthetase (AM 100.0 5.3E-46 1.8E-50 378.0 17.9 293 37-466 38-344 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 1.6E-42 5.4E-47 360.5 29.1 320 38-466 88-427 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 7.4E-42 2.5E-46 356.2 29.7 313 37-466 93-434 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 7.2E-42 2.5E-46 355.7 27.6 313 37-466 91-429 (437)
35 3t5a_A Long-chain-fatty-acid-- 100.0 1.7E-37 5.8E-42 325.5 14.5 235 37-355 184-480 (480)
36 3hgu_A EHPF; phenazine, antibi 100.0 8.2E-28 2.8E-32 244.2 17.7 233 38-366 93-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.0 1.3E-09 4.3E-14 90.8 8.5 93 354-465 1-99 (109)
38 4b2g_A GH3-1 auxin conjugating 98.9 2.6E-08 8.8E-13 106.2 16.8 145 220-392 308-479 (609)
39 3gxs_A Phenylacetate-coenzyme 98.9 4.9E-09 1.7E-13 87.3 8.9 94 354-466 1-100 (109)
40 4epl_A Jasmonic acid-amido syn 98.9 3E-07 1E-11 97.6 24.3 151 216-393 301-475 (581)
41 4eql_A 4-substituted benzoates 98.9 9.5E-08 3.3E-12 101.6 20.3 145 220-392 303-467 (581)
42 2cvi_A 75AA long hypothetical 48.3 31 0.0011 25.7 5.3 39 370-408 15-53 (83)
43 2zbc_A 83AA long hypothetical 44.6 32 0.0011 25.3 4.9 37 370-406 15-51 (83)
44 3ezx_A MMCP 1, monomethylamine 43.9 1.7E+02 0.0058 26.1 10.6 51 72-122 92-149 (215)
45 2djw_A Probable transcriptiona 41.2 39 0.0013 25.6 5.0 42 370-411 15-56 (92)
46 3g7s_A Long-chain-fatty-acid-- 34.8 1E+02 0.0036 31.4 8.6 71 61-132 66-140 (549)
47 2v7b_A Benzoate-coenzyme A lig 32.1 1.1E+02 0.0037 31.0 8.1 70 62-132 63-136 (529)
48 1v25_A Long-chain-fatty-acid-C 32.0 1.2E+02 0.004 31.0 8.4 69 62-131 62-134 (541)
49 3ni2_A 4-coumarate:COA ligase; 30.8 1.1E+02 0.0037 31.1 7.9 72 61-133 63-138 (536)
50 3rix_A Luciferase, luciferin 4 30.0 1.1E+02 0.0037 31.3 7.7 72 61-133 64-139 (550)
51 3r44_A Fatty acyl COA syntheta 27.2 1.6E+02 0.0054 29.7 8.3 70 61-131 57-130 (517)
52 3c5e_A Acyl-coenzyme A synthet 26.9 1.5E+02 0.005 30.5 8.1 64 67-131 94-161 (570)
53 3ivr_A Putative long-chain-fat 25.9 1.3E+02 0.0045 30.1 7.4 71 61-132 45-119 (509)
54 1ry2_A Acetyl-coenzyme A synth 25.9 2.3E+02 0.008 29.7 9.6 66 60-126 126-196 (663)
55 4fuq_A Malonyl COA synthetase; 25.7 1.2E+02 0.0042 30.5 7.1 69 61-130 42-114 (503)
56 2cg4_A Regulatory protein ASNC 24.4 1.3E+02 0.0046 24.7 6.0 38 370-407 82-119 (152)
57 3gqw_A Fatty acid AMP ligase; 23.7 2E+02 0.0068 29.2 8.3 69 62-131 64-143 (576)
58 3kxw_A Saframycin MX1 syntheta 23.2 2.1E+02 0.0071 29.2 8.4 71 61-132 54-131 (590)
59 3etc_A AMP-binding protein; ad 22.9 1.6E+02 0.0054 30.4 7.4 65 60-125 99-167 (580)
60 2d1s_A Luciferase, luciferin 4 22.8 1.2E+02 0.0042 30.9 6.5 70 62-132 67-140 (548)
61 1t5h_X 4-chlorobenzoyl COA lig 21.9 2E+02 0.0068 28.8 7.8 67 62-129 44-116 (504)
62 3i4p_A Transcriptional regulat 21.8 1.2E+02 0.0041 25.6 5.2 34 370-403 79-112 (162)
63 1amu_A GRSA, gramicidin synthe 21.1 2.2E+02 0.0074 29.2 8.0 66 62-128 79-148 (563)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3.1e-52 Score=441.91 Aligned_cols=322 Identities=23% Similarity=0.321 Sum_probs=277.6
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CHH
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVR 106 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~~ 106 (467)
-.+++|+|||||||.||+|+++|+ .......++++++|++++.+|++|.+++.. .+.++..|+++++. ++.
T Consensus 155 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 234 (503)
T 4fuq_A 155 DDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPD 234 (503)
T ss_dssp TSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHH
T ss_pred CCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHH
Confidence 345699999999999999999998 334556678999999999999999999765 45668899998885 688
Q ss_pred HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261 107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 186 (467)
Q Consensus 107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (467)
.+++.++ ++|++.++|+++..+.+....
T Consensus 235 ~~~~~i~--~~t~~~~~P~~~~~l~~~~~~-------------------------------------------------- 262 (503)
T 4fuq_A 235 KILDLMA--RATVLMGVPTFYTRLLQSPRL-------------------------------------------------- 262 (503)
T ss_dssp HHHHHHT--TCCEEEECHHHHHHHHTCTTC--------------------------------------------------
T ss_pred HHHHHHh--hcCEEEEHHHHHHHHHhCCCc--------------------------------------------------
Confidence 8999987 899999999999988762100
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCCCC
Q 012261 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTCN 265 (467)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~ 265 (467)
....++++|.+++||+++++++. ++.+.+|.++++.||+||++...........
T Consensus 263 -------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~ 317 (503)
T 4fuq_A 263 -------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDR 317 (503)
T ss_dssp -------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCC
T ss_pred -------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCC
Confidence 01345667999999999999985 4555779999999999999877655444556
Q ss_pred CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261 266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR 345 (467)
Q Consensus 266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~ 345 (467)
.++++|.|+++++++++|+++++++|.|+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++
T Consensus 318 ~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~--------- 388 (503)
T 4fuq_A 318 VPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE--------- 388 (503)
T ss_dssp CTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT---------
T ss_pred cCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC---------
Confidence 77899999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCc
Q 012261 346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADA 421 (467)
Q Consensus 346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~ 421 (467)
||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.++|+++++
T Consensus 389 -dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---------------- 450 (503)
T 4fuq_A 389 -RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG---------------- 450 (503)
T ss_dssp -TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT----------------
T ss_pred -CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC----------------
Confidence 9999999999999997 9999999999999999999999999998664 35678887653
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 451 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 490 (503)
T 4fuq_A 451 ATIDEAQVLHGLDGQLAKF-----KMPKKVIFVDDLPRNTMGKVQ 490 (503)
T ss_dssp CCCCHHHHHHHHBTTBCGG-----GCCSEEEEESCCCBCTTSCBC
T ss_pred CCCCHHHHHHHHHhhcccC-----CCCCEEEEECCCCCCccccee
Confidence 4567788999999998888 578899999999999999985
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=6.2e-52 Score=442.78 Aligned_cols=324 Identities=24% Similarity=0.362 Sum_probs=278.8
Q ss_pred CCceEEEeeeCCCCCCcceehhhhh--H---hhh----cccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec--
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQI--R---SLY----DIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-- 103 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~~--~---~~~----~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~-- 103 (467)
-.+++|+|||||||.||+|+++|+. . ... ..+++.++|++++++|++|++++... +.++..|+++++.
T Consensus 178 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~ 257 (536)
T 3ni2_A 178 DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPK 257 (536)
T ss_dssp TSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSS
T ss_pred cCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 4456999999999999999999981 1 111 13567899999999999999998655 5569999999985
Q ss_pred -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261 104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 182 (467)
Q Consensus 104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (467)
++..+++.++++++|++.++|+++..+.+....
T Consensus 258 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------- 291 (536)
T 3ni2_A 258 FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL---------------------------------------------- 291 (536)
T ss_dssp CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG----------------------------------------------
T ss_pred CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCccc----------------------------------------------
Confidence 688999999999999999999999988752100
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHh-CCceeecccccccccccccc
Q 012261 183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAI-GVKVQVGYGLTESSPVIAAR 260 (467)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~ 260 (467)
-..+++++|.+++||+++++++.+.+ +.+ ++++++.||+||++++.+.+
T Consensus 292 -----------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 342 (536)
T 3ni2_A 292 -----------------------------DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMC 342 (536)
T ss_dssp -----------------------------GGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEEC
T ss_pred -----------------------------ccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcc
Confidence 01456677999999999999995554 566 89999999999999765544
Q ss_pred C-----CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEc
Q 012261 261 R-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335 (467)
Q Consensus 261 ~-----~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~ 335 (467)
. .....++++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|+++
T Consensus 343 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~ 422 (536)
T 3ni2_A 343 LAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422 (536)
T ss_dssp GGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEc
Confidence 2 22346789999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 411 (467)
Q Consensus 336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~ 411 (467)
+ ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+.+++
T Consensus 423 ~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------ 485 (536)
T 3ni2_A 423 D----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK------ 485 (536)
T ss_dssp T----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------
T ss_pred C----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC------
Confidence 9 9999999999999998 9999999999999999999999999997654 45678887643
Q ss_pred HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| .+|++|.++++.|.+.+||+.
T Consensus 486 ----------~~~~~~~l~~~l~~~l~~~-----~~p~~i~~v~~lP~t~~GKi~ 525 (536)
T 3ni2_A 486 ----------SQATEDEIKQYISKQVIFY-----KRIKRVFFIEAIPKAPSGKIL 525 (536)
T ss_dssp ----------CCCCHHHHHHHHHTTSCGG-----GCCSEEEECSCCCBCTTSCBC
T ss_pred ----------CCCCHHHHHHHHHHhccCC-----ccccEEEEEecCCCCCCCCee
Confidence 4567789999999999888 578899999999999999985
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7.1e-52 Score=443.69 Aligned_cols=323 Identities=23% Similarity=0.322 Sum_probs=278.3
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcc---cCCCCCCEEEEECChhHHHHHHHhHH-HhhcCceEEec---
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDI---VPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT--- 103 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~---~~~~~~d~~l~~lPl~h~~g~~~~~~-~l~~G~~~v~~--- 103 (467)
-.+++|+|||||||.||+|+++|+ +...... ++++++|++++++|++|++++...+. ++ .|+++++.
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~ 270 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKF 270 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCC
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCC
Confidence 346799999999999999999998 1222233 67889999999999999999876544 46 99999985
Q ss_pred CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261 104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA 183 (467)
Q Consensus 104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (467)
++..+++.++++++|++.++|+++..|.+.... .
T Consensus 271 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------~---------------- 304 (548)
T 2d1s_A 271 DEETFLKTLQDYKCTSVILVPTLFAILNKSELL------------------------------N---------------- 304 (548)
T ss_dssp CHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCG------------------------------G----------------
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhCccc------------------------------c----------------
Confidence 689999999999999999999999988752000 0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHh-CCceeeccccccccccccccC
Q 012261 184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI-GVKVQVGYGLTESSPVIAARR 261 (467)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~-g~~v~~~YG~TE~~~~~~~~~ 261 (467)
...++++|.+++||+++++++.+ +.+.+ +.++++.||+||+++..+.++
T Consensus 305 -----------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 355 (548)
T 2d1s_A 305 -----------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP 355 (548)
T ss_dssp -----------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC
T ss_pred -----------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC
Confidence 02456679999999999999954 45567 688999999999998776655
Q ss_pred CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261 262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341 (467)
Q Consensus 262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~ 341 (467)
......+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|++++
T Consensus 356 ~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----- 430 (548)
T 2d1s_A 356 EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----- 430 (548)
T ss_dssp TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT-----
T ss_pred cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC-----
Confidence 445677899999999999999988899999999999999999999999999999999998899999999999999
Q ss_pred CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261 342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV 417 (467)
Q Consensus 342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~ 417 (467)
||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++++
T Consensus 431 -----dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~------------ 492 (548)
T 2d1s_A 431 -----EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG------------ 492 (548)
T ss_dssp -----TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT------------
T ss_pred -----CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC------------
Confidence 9999999999999997 9999999999999999999999999998765 45688887643
Q ss_pred ccCcccCCHHHHHHHHHHHHHHHhhcCCCccc-cEEEeCCCCCCCCCccC
Q 012261 418 HADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~-~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| .+|+ .|.++++.|.+.+||+.
T Consensus 493 ----~~~~~~~l~~~~~~~l~~~-----~~p~~~i~~v~~lP~t~~GKi~ 533 (548)
T 2d1s_A 493 ----KNMTEKEVMDYVASQVSNA-----KRLRGGVRFVDEVPKGLTGKID 533 (548)
T ss_dssp ----CCCCHHHHHHHHHTTSCGG-----GSCTTCEEECSSCCBCTTSCBC
T ss_pred ----CCCCHHHHHHHHHHhcccc-----ccccccEEEccCCCCCCcchhH
Confidence 3467788999999888888 5777 89999999999999984
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=7.2e-52 Score=443.60 Aligned_cols=323 Identities=22% Similarity=0.304 Sum_probs=197.7
Q ss_pred CceEEEeeeCCCCCCcceehhhhh-----Hhhhcc---cCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV 105 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~~---~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~ 105 (467)
.+++|+|||||||.||+|+++|+. ...... +++.++|++++++|++|++++...+.++..|+++++. ++
T Consensus 191 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~ 270 (550)
T 3rix_A 191 TIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEE 270 (550)
T ss_dssp SEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCH
T ss_pred CEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCH
Confidence 357999999999999999999981 122222 4678899999999999999998778889999999995 68
Q ss_pred HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261 106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 185 (467)
Q Consensus 106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (467)
..+++.++++++|++.++|+++..+.+.....
T Consensus 271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------ 302 (550)
T 3rix_A 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLID------------------------------------------------ 302 (550)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG------------------------------------------------
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc------------------------------------------------
Confidence 99999999999999999999999887621000
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCc-eeeccccccccccccccCCC
Q 012261 186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVK-VQVGYGLTESSPVIAARRPT 263 (467)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~-v~~~YG~TE~~~~~~~~~~~ 263 (467)
..+++++|.+++||+++++++.+ +.+.++.. +++.||+||+++..+..+..
T Consensus 303 ---------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 355 (550)
T 3rix_A 303 ---------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG 355 (550)
T ss_dssp ---------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred ---------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC
Confidence 13456779999999999999954 45577765 99999999999888877776
Q ss_pred CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261 264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 343 (467)
Q Consensus 264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~ 343 (467)
....+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|++++
T Consensus 356 ~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~------- 428 (550)
T 3rix_A 356 DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE------- 428 (550)
T ss_dssp CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT-------
T ss_pred CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC-------
Confidence 6788999999999999999988999999999999999999999999999999999998899999999999999
Q ss_pred cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHcccccc
Q 012261 344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHA 419 (467)
Q Consensus 344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~ 419 (467)
||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++. +.++|+++++
T Consensus 429 ---dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-------------- 490 (550)
T 3rix_A 429 ---DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG-------------- 490 (550)
T ss_dssp ---TCCEEEC----------------------------------------------------------------------
T ss_pred ---CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC--------------
Confidence 9999999999999997 99999999999999999999999999987653 4567776543
Q ss_pred CcccCCHHHHHHHHHHHHHHHhhcCCCccc-cEEEeCCCCCCCCCccC
Q 012261 420 DASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~-~i~~~~~~~~~~~g~~~ 466 (467)
...+.+++++++++++..+ .++. .|.++++.|.+.+||+.
T Consensus 491 --~~~~~~~l~~~~~~~l~~~-----~~~~~~i~~v~~lP~t~~GKi~ 531 (550)
T 3rix_A 491 --KTMTEKEIVDYVASQVTTA-----KKLRGGVVFVDEVPKGLTGKLD 531 (550)
T ss_dssp ------------------------------------------------
T ss_pred --CCCCHHHHHHHHHHhcccc-----cccCCceEEEeecCCCCCccee
Confidence 3456678999999998887 4554 69999999999999985
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.7e-51 Score=437.19 Aligned_cols=321 Identities=17% Similarity=0.254 Sum_probs=273.1
Q ss_pred CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CHH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AVR 106 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~~ 106 (467)
.+++|+|||||||.||||+++|+ +......++++++|++++++|++|.+++.. .+.++..|+++++. ++.
T Consensus 183 d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~ 262 (539)
T 1mdb_A 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262 (539)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHH
T ss_pred ceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHH
Confidence 45699999999999999999998 233445578899999999999999999875 56679999999985 689
Q ss_pred HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261 107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 186 (467)
Q Consensus 107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (467)
.+++.++++++|++.++|+++..+.+.....
T Consensus 263 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------- 293 (539)
T 1mdb_A 263 DAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------------------------------- 293 (539)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------------------------------
Confidence 9999999999999999999999987742211
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC-C
Q 012261 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT-C 264 (467)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~ 264 (467)
..+++++|.+++||+++++++.+ +.+.+|+++++.||+||++......... .
T Consensus 294 --------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~ 347 (539)
T 1mdb_A 294 --------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEE 347 (539)
T ss_dssp --------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHH
T ss_pred --------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHH
Confidence 13456779999999999999854 4556799999999999965433322111 1
Q ss_pred CCCCcccccCCC-eEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261 265 NVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 343 (467)
Q Consensus 265 ~~~g~vG~p~~~-~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~ 343 (467)
...+++|.|+++ .+++++| +.+++++.|+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++
T Consensus 348 ~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~------- 419 (539)
T 1mdb_A 348 IIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR------- 419 (539)
T ss_dssp HHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT-------
T ss_pred hcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC-------
Confidence 245789999975 5899999 6789999999999999999999999999999999998899999999999999
Q ss_pred cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261 344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA 419 (467)
Q Consensus 344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~ 419 (467)
||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ .+.|+|+++.
T Consensus 420 ---dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~--------------- 480 (539)
T 1mdb_A 420 ---DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD--------------- 480 (539)
T ss_dssp ---TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------------
T ss_pred ---CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC---------------
Confidence 9999999999999995 9999999999999999999999999998765 4567777752
Q ss_pred CcccCCHHHHHHHHHHH-HHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 420 DASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 420 ~~~~~~~~~l~~~~~~~-l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++ |+.| ..|+.|.++++.|.+.+||+.
T Consensus 481 --~~~~~~~l~~~l~~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 521 (539)
T 1mdb_A 481 --EAPKAAELKAFLRERGLAAY-----KIPDRVEFVESFPQTGVGKVS 521 (539)
T ss_dssp --SCCCHHHHHHHHHHTTCCGG-----GSCSEEEECSSCCBCTTSCBC
T ss_pred --CCCCHHHHHHHHHhCCCCcc-----cCCCEEEEeccCCCCCCcCEe
Confidence 235678899999987 8888 578899999999999999985
No 6
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=9.3e-51 Score=430.88 Aligned_cols=326 Identities=24% Similarity=0.292 Sum_probs=268.7
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CHH
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AVR 106 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~~ 106 (467)
-.+++|+|||||||.||+|+++|+ +......++++++|++++.+|++|.+++.. .+.++..|+++++. ++.
T Consensus 155 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~ 234 (505)
T 3nyq_A 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTE 234 (505)
T ss_dssp TSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHH
T ss_pred CCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChH
Confidence 345699999999999999999998 334455678999999999999999999875 46679999999985 678
Q ss_pred HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261 107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 186 (467)
Q Consensus 107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (467)
.+++.+ ++++|++.++|+++..+.+..... +.
T Consensus 235 ~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~----~~------------------------------------------- 266 (505)
T 3nyq_A 235 GAAREL-NDGATMLFGVPTMYHRIAETLPAD----PE------------------------------------------- 266 (505)
T ss_dssp HHHHHH-TTTCCEEEECHHHHHHHHHHGGGC----HH-------------------------------------------
T ss_pred HHHHHH-hhCCeEEEehHHHHHHHHHhhhcC----ch-------------------------------------------
Confidence 888888 789999999999999987732211 00
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCCCC
Q 012261 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCN 265 (467)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~ 265 (467)
....++++|.+++||+++++++.+ +.+.+|.++++.||+||++...+.......
T Consensus 267 -------------------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~ 321 (505)
T 3nyq_A 267 -------------------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEP 321 (505)
T ss_dssp -------------------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCC
T ss_pred -------------------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCC
Confidence 012344459999999999999855 445679999999999999987776666666
Q ss_pred CCCcccccCCCeEEEEEeCCCCcccCC---CCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261 266 VLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 342 (467)
Q Consensus 266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~---g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~ 342 (467)
..+++|.|+++++++++| +++++++. |+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++
T Consensus 322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~------ 394 (505)
T 3nyq_A 322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP------ 394 (505)
T ss_dssp CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT------
T ss_pred CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC------
Confidence 788999999999999999 55788776 89999999999999999999999999998899999999999999
Q ss_pred ccccCceEEEEccC-CCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261 343 SRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV 417 (467)
Q Consensus 343 ~~~~~G~l~i~GR~-~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~ 417 (467)
||.+++.||+ ||+|+. +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++.+
T Consensus 395 ----dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~------------ 457 (505)
T 3nyq_A 395 ----DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP------------ 457 (505)
T ss_dssp ----TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST------------
T ss_pred ----CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC------------
Confidence 9999999998 588986 9999999999999999999999999998764 56788887642
Q ss_pred ccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 418 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 418 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
....+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 458 ---~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 498 (505)
T 3nyq_A 458 ---AAPPALGTLADHVAARLAPH-----KRPRVVRYLDAVPRNDMGKIM 498 (505)
T ss_dssp ---TSCCCHHHHHHHHHHHTCGG-----GSCSEEEECSCCCC-------
T ss_pred ---CCCCCHHHHHHHHHhhCCCC-----cCccEEEEECCCCCCCCcCee
Confidence 14466789999999999999 578899999999999999985
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.4e-51 Score=438.26 Aligned_cols=328 Identities=20% Similarity=0.321 Sum_probs=258.4
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN 107 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~ 107 (467)
-.+++|+|||||||.||||+++|. +......+++.++|++++++|++|.+++...+.++..|+++++. ++..
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 259 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEM 259 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHH
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHH
Confidence 345799999999999999999997 33445567899999999999999999988766779999999884 7899
Q ss_pred HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261 108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW 187 (467)
Q Consensus 108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (467)
+++.++++++|++.++|+++..+.+.......
T Consensus 260 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------------ 291 (549)
T 3g7s_A 260 LAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------------------------------------------ 291 (549)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------------------------------------------
T ss_pred HHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------------------------------------------
Confidence 99999999999999999999999874322100
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHH----hC---Cceeeccccccccccccc
Q 012261 188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEA----IG---VKVQVGYGLTESSPVIAA 259 (467)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~----~g---~~v~~~YG~TE~~~~~~~ 259 (467)
..+++.+|.+++||+++++++.+ +.+. ++ +++++.||+||+++..+.
T Consensus 292 -------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 346 (549)
T 3g7s_A 292 -------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTT 346 (549)
T ss_dssp -------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEE
T ss_pred -------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhc
Confidence 02456679999999999999844 4444 56 899999999999987776
Q ss_pred cCCCC-CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccC--CCC--eeecccEEEE
Q 012261 260 RRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGWI 334 (467)
Q Consensus 260 ~~~~~-~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~--~~g--w~~TGD~~~~ 334 (467)
..... ...+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.|...|. .+| ||+|||+|++
T Consensus 347 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~ 426 (549)
T 3g7s_A 347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426 (549)
T ss_dssp CCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEE
T ss_pred CCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEE
Confidence 65433 467899999999999999989999999999999999999999999999999999984 577 9999999999
Q ss_pred cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHH
Q 012261 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA 410 (467)
Q Consensus 335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~ 410 (467)
++ ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++++.
T Consensus 427 ~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~---- 491 (549)
T 3g7s_A 427 DE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY---- 491 (549)
T ss_dssp CT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT----
T ss_pred cC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc----
Confidence 99 9999999999999997 9999999999999999999999999998765 466888887541
Q ss_pred HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
....+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 492 ----------~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 532 (549)
T 3g7s_A 492 ----------RGKVDEEDIIEWVRERISGY-----KRVREVEFVEELPRTASGKLL 532 (549)
T ss_dssp ----------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC--------
T ss_pred ----------cCcCCHHHHHHHHHHhccCc-----ccceEEEEeccCCCCCCcCEe
Confidence 13467889999999999888 578899999999999999985
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.7e-50 Score=428.40 Aligned_cols=320 Identities=21% Similarity=0.284 Sum_probs=273.9
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN 107 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~ 107 (467)
-.+++|+|||||||.||+|+++|+ +......++++++|++++++|++|++++...+.++..|+++++. ++..
T Consensus 170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~ 249 (517)
T 3r44_A 170 DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATK 249 (517)
T ss_dssp TSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred CCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHH
Confidence 345699999999999999999998 33445667899999999999999999998777776699999985 6899
Q ss_pred HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261 108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW 187 (467)
Q Consensus 108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (467)
+++.++++++|++.++|+++..+.+....
T Consensus 250 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------------------------------- 278 (517)
T 3r44_A 250 VWSLIVEERVCIGGAVPAILNFMRQVPEF--------------------------------------------------- 278 (517)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHHHSHHH---------------------------------------------------
T ss_pred HHHHHHHhCCeEEEeHHHHHHHHHhCccc---------------------------------------------------
Confidence 99999999999999999999988763111
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC--CC
Q 012261 188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT--CN 265 (467)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~ 265 (467)
...+++++|.+++||+++++++.+.+...++++++.||+||+++..+..... ..
T Consensus 279 ------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 334 (517)
T 3r44_A 279 ------------------------AELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALR 334 (517)
T ss_dssp ------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECGGGTTT
T ss_pred ------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCCccccc
Confidence 0134567799999999999999777776699999999999998766654432 34
Q ss_pred CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261 266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR 345 (467)
Q Consensus 266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~ 345 (467)
..+++|.|.++++++++| +++..++.| .|||+++|++++.|||++|+.|...| .+|||+|||+|++++
T Consensus 335 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~--------- 402 (517)
T 3r44_A 335 KAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD--------- 402 (517)
T ss_dssp TTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT---------
T ss_pred cCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC---------
Confidence 678999999999999999 668889988 89999999999999999999999999 689999999999999
Q ss_pred cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCc
Q 012261 346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADA 421 (467)
Q Consensus 346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~ 421 (467)
||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++. +.++| +.++
T Consensus 403 -dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~---------------- 463 (517)
T 3r44_A 403 -EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQ---------------- 463 (517)
T ss_dssp -TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECT----------------
T ss_pred -CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCC----------------
Confidence 9999999999999996 99999999999999999999999999987654 33444 3222
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 464 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 503 (517)
T 3r44_A 464 NEVSEQQIVEYCGTRLARY-----KLPKKVIFAEAIPRNPTGKIL 503 (517)
T ss_dssp TTCCHHHHHHHHHHHSCGG-----GSCSEEEECSCCCBCTTCCBC
T ss_pred CCCCHHHHHHHHHHhCCCC-----CCCCEEEEECCCCCCCCcCcc
Confidence 4567889999999999999 578899999999999999985
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.2e-50 Score=427.42 Aligned_cols=321 Identities=19% Similarity=0.237 Sum_probs=269.2
Q ss_pred CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCC--CCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AV 105 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~--~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~ 105 (467)
.+++|+|||||||.||+|+++|+ +......+++ .++|++++++|++|++++.. .+.++..|+++++. ++
T Consensus 154 ~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~ 233 (504)
T 1t5h_X 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRP 233 (504)
T ss_dssp SEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCH
T ss_pred CeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCH
Confidence 45699999999999999999998 2233345677 78899999999999999854 56679999999985 68
Q ss_pred HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261 106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 185 (467)
Q Consensus 106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (467)
..+++.++++++|++.++|+++..+.+...+.. .
T Consensus 234 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------~------------------ 267 (504)
T 1t5h_X 234 VDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------------------S------------------ 267 (504)
T ss_dssp HHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------------C------------------
T ss_pred HHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------------c------------------
Confidence 899999999999999999999999876321000 0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCCC
Q 012261 186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTC 264 (467)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~~ 264 (467)
...++++|.+++||+++++++.+ +.+.++..+++.||+||++...... .
T Consensus 268 ---------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~---~ 317 (504)
T 1t5h_X 268 ---------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMR---Q 317 (504)
T ss_dssp ---------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEE---S
T ss_pred ---------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccccccc---C
Confidence 02456679999999999999954 4556799999999999994332222 3
Q ss_pred CCCCcccccCCCeEEEEEeCCCC--cccCCCCceEEEEe-CCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261 265 NVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341 (467)
Q Consensus 265 ~~~g~vG~p~~~~~v~i~d~~~~--~~~~~g~~GEL~v~-~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~ 341 (467)
...+++|.|.++++++++|.+.+ ++++.|+.|||+++ |++++.|||++|+.|...| .+|||+|||+|++++
T Consensus 318 ~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~----- 391 (504)
T 1t5h_X 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP----- 391 (504)
T ss_dssp CSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT-----
T ss_pred CCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECC-----
Confidence 45689999999999999995432 89999999999999 9999999999999999999 689999999999999
Q ss_pred CccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccc
Q 012261 342 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV 417 (467)
Q Consensus 342 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~ 417 (467)
||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++++
T Consensus 392 -----dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------------ 453 (504)
T 1t5h_X 392 -----EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG------------ 453 (504)
T ss_dssp -----TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT------------
T ss_pred -----CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC------------
Confidence 9999999999999996 9999999999999999999999999998764 47788888654
Q ss_pred ccCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 418 HADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 418 ~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.+++++++++ +|+.| +.|++|+++++.|.+.+||+.
T Consensus 454 ----~~~~~~~l~~~~~~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 494 (504)
T 1t5h_X 454 ----ETLSADALDTFCRSSELADF-----KRPKRYFILDQLPKNALNKVL 494 (504)
T ss_dssp ----CCCCHHHHHHHHHTSSCCGG-----GSCSEEEECSCCCBCTTSCBC
T ss_pred ----cCcCHHHHHHHHhhccCccc-----ccceEEEEhhhCCCCCCCCEe
Confidence 34677889999988 78888 688999999999999999985
No 10
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7e-51 Score=435.25 Aligned_cols=322 Identities=24% Similarity=0.345 Sum_probs=238.3
Q ss_pred CCceEEEeeeCCCCCCcceehhhhhH-----h--hhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----C
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQIR-----S--LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----A 104 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~~~-----~--~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~ 104 (467)
-.+++|+|||||||.||+|+++|+.. . ....++++++|++++++|++|++++...+.++..|+++++. +
T Consensus 176 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~ 255 (541)
T 1v25_A 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLD 255 (541)
T ss_dssp TSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCS
T ss_pred CCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCC
Confidence 34568999999999999999999821 1 22346788999999999999999987677789999999984 6
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.++++++|++.++|+++..|.+.....
T Consensus 256 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------------- 288 (541)
T 1v25_A 256 PASLVELFDGEGVTFTAGVPTVWLALADYLEST----------------------------------------------- 288 (541)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-----------------------------------------------
Confidence 889999999999999999999999997743221
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC 264 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~ 264 (467)
..+++++|.+++||+++++++.+.++.+|+++++.||+||+++..+.+....
T Consensus 289 ----------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~ 340 (541)
T 1v25_A 289 ----------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKS 340 (541)
T ss_dssp ----------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEECCCCG
T ss_pred ----------------------------CCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecccccc
Confidence 1345677999999999999996555778999999999999987766654321
Q ss_pred -----------CCCCcccccCCCeEEEEEeCCCCcccCC--CCceEEEEeCCCcCcccCCCccccccccCCCCeeecccE
Q 012261 265 -----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI 331 (467)
Q Consensus 265 -----------~~~g~vG~p~~~~~v~i~d~~~~~~~~~--g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~ 331 (467)
...+++|.|+++++++|+| +.+++++. ++.|||+++|++++.|||++|+.|...|..+|||+|||+
T Consensus 341 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl 419 (541)
T 1v25_A 341 HLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDI 419 (541)
T ss_dssp GGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEE
T ss_pred cccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCE
Confidence 2357899999999999999 56788884 368999999999999999999999999987999999999
Q ss_pred EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHH
Q 012261 332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 407 (467)
Q Consensus 332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~ 407 (467)
|++++ ||.+++.||+||+||. +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++ +
T Consensus 420 g~~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~-- 485 (541)
T 1v25_A 420 AVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-G-- 485 (541)
T ss_dssp EEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------
T ss_pred EEEcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-C--
Confidence 99999 9999999999999996 9999999999999999999999999998765 456666664 1
Q ss_pred HHHHHHccccccCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 408 LMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.+++++++++ +|+.| +.|+.|+++++.|.+.+||+.
T Consensus 486 --------------~~~~~~~l~~~~~~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 526 (541)
T 1v25_A 486 --------------EKPTPEELNEHLLKAGFAKW-----QLPDAYVFAEEIPRTSAGKFL 526 (541)
T ss_dssp -----------------------------CCCTT-----TSCSBC--------------C
T ss_pred --------------CCCCHHHHHHHHHhccCccc-----cCCcEEEEeCCCCCCCccCee
Confidence 22345677788877 67777 678899999999999999985
No 11
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=5.8e-50 Score=437.54 Aligned_cols=324 Identities=15% Similarity=0.100 Sum_probs=273.1
Q ss_pred CceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHH-HhHHHhhcCceEEec------
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT------ 103 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~-~~~~~l~~G~~~v~~------ 103 (467)
.+++|+|||||||.||||+++|+. ......++++++|++++++|++|+++.. ..+.+|..|+++++.
T Consensus 257 d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~ 336 (652)
T 1pg4_A 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336 (652)
T ss_dssp SEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTS
T ss_pred CCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCC
Confidence 456999999999999999999981 1233457899999999999999999984 456789999999984
Q ss_pred -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261 104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 182 (467)
Q Consensus 104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (467)
++..+++.++++++|++.++|+++..|.+...+..
T Consensus 337 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------------------- 372 (652)
T 1pg4_A 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI-------------------------------------------- 372 (652)
T ss_dssp SSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT--------------------------------------------
T ss_pred CCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc--------------------------------------------
Confidence 47889999999999999999999998876211000
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhC---Cceeecccccccccccc
Q 012261 183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIG---VKVQVGYGLTESSPVIA 258 (467)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g---~~v~~~YG~TE~~~~~~ 258 (467)
...+++++|.+++||+++++++.++ .+.+| +++++.||+||+++.++
T Consensus 373 -----------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 423 (652)
T 1pg4_A 373 -----------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 423 (652)
T ss_dssp -----------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred -----------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence 0134677899999999999999555 45677 89999999999997666
Q ss_pred ccCCC--CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC--CCcCcccCCCccccccccC--CCCeeecccEE
Q 012261 259 ARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIG 332 (467)
Q Consensus 259 ~~~~~--~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~--~~gw~~TGD~~ 332 (467)
...+. ..+.+++|.|+++++++|+| +.+++++.|+.|||+++| |+++.|||++++.+...+. .+|||+|||+|
T Consensus 424 ~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg 502 (652)
T 1pg4_A 424 TPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGA 502 (652)
T ss_dssp CCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEE
T ss_pred cCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEE
Confidence 65432 34679999999999999999 568999999999999999 7999999999998887763 38999999999
Q ss_pred EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261 333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL 408 (467)
Q Consensus 333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~ 408 (467)
++++ ||.++|.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++++
T Consensus 503 ~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~--- 568 (652)
T 1pg4_A 503 RRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG--- 568 (652)
T ss_dssp EECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT---
T ss_pred EEcC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCC---
Confidence 9999 9999999999999998 8999999999999999999999999998654 47788988754
Q ss_pred HHHHHccccccCcccCC---HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 409 MAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 409 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+ .++++++++++|..| ..|+.|+++++.|.+.+||+.
T Consensus 569 -------------~~~~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~T~sGKi~ 611 (652)
T 1pg4_A 569 -------------EEPSPELYAEVRNWVRKEIGPL-----ATPDVLHWTDSLPKTRSGKIM 611 (652)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTCGG-----GCCSEEEECSCCCBCTTSCBC
T ss_pred -------------CCCCHHHHHHHHHHHHHhCCCC-----cCCeEEEEcCCCCCCCCccch
Confidence 1122 456777888777777 588899999999999999984
No 12
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=7.1e-50 Score=431.18 Aligned_cols=324 Identities=20% Similarity=0.222 Sum_probs=264.4
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec-----C
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----A 104 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~-----~ 104 (467)
-.+++|+|||||||.||+|+++|. .......+++.++|+++...|+.|..+... .+.++..|+++++. +
T Consensus 225 ~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 304 (580)
T 3etc_A 225 EDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFE 304 (580)
T ss_dssp TSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCC
T ss_pred CCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 345699999999999999999997 223334568889999999999999888765 45668999998874 5
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.++++++|++.++|+++..|.+.. .
T Consensus 305 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------------------------~--------------- 335 (580)
T 3etc_A 305 AKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------------------------L--------------- 335 (580)
T ss_dssp HHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------------------------C---------------
T ss_pred HHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------------------------c---------------
Confidence 889999999999999999999998886510 0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPT 263 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~ 263 (467)
-..+++++|.+++||+++++++. ++.+.+|+++++.||+||++...+..+..
T Consensus 336 ---------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~ 388 (580)
T 3etc_A 336 ---------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM 388 (580)
T ss_dssp ------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS
T ss_pred ---------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCC
Confidence 01356677999999999999994 55557799999999999998777766666
Q ss_pred CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeC-----CCcCcccCCCccccccccCCCCeeecccEEEEcCCC
Q 012261 264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338 (467)
Q Consensus 264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~-----~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~ 338 (467)
..+++++|.|+++++++|+| +++++++.|+.|||++++ ++++.|||++|+.|...| .+|||+|||+|++++
T Consensus 389 ~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~-- 464 (580)
T 3etc_A 389 EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDE-- 464 (580)
T ss_dssp CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECT--
T ss_pred CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECC--
Confidence 66889999999999999999 559999999999999997 789999999999999999 599999999999999
Q ss_pred CCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHc
Q 012261 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL 414 (467)
Q Consensus 339 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~ 414 (467)
||.++++||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++++.
T Consensus 465 --------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~-------- 527 (580)
T 3etc_A 465 --------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY-------- 527 (580)
T ss_dssp --------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------
T ss_pred --------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC--------
Confidence 9999999999999997 8999999999999999999999999998765 355778876541
Q ss_pred cccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 415 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 415 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+...+++++++++.|+.| ..|+.|.++++.|.+.+||+.
T Consensus 528 -----~~~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~sGKi~ 569 (580)
T 3etc_A 528 -----TPSDSLKNELQDHVKNVTAPY-----KYPRIIEFVPELPKTISGKIR 569 (580)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCGG-----GCCSEEEEECC----------
T ss_pred -----CCCHHHHHHHHHHHHhhCCCc-----cCCeEEEEeCCCCCCCCcCCc
Confidence 001112457777777777777 578899999999999999984
No 13
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=5.7e-50 Score=430.41 Aligned_cols=314 Identities=18% Similarity=0.170 Sum_probs=265.3
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A 104 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~ 104 (467)
-.+++|+|||||||.||||+++|+ .......++++++|++++++|++|.++....+.++..|+++++. +
T Consensus 182 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~ 261 (563)
T 1amu_A 182 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTIND 261 (563)
T ss_dssp TSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTC
T ss_pred CCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcC
Confidence 345799999999999999999998 22344567889999999999999999987777889999999985 4
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.++++++|++.++|+++..+..
T Consensus 262 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~---------------------------------------------------- 289 (563)
T 1amu_A 262 FVKFEQYINQKEITVITLPPTYVVHLDP---------------------------------------------------- 289 (563)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHTTSCT----------------------------------------------------
T ss_pred HHHHHHHHHHcCCcEEEeCHHHHHHHHh----------------------------------------------------
Confidence 6789999999999999999999866532
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC 264 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~ 264 (467)
..+.++|.+++||+++++++.+.+.. .+++++.||+||++...+......
T Consensus 290 -----------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~ 339 (563)
T 1amu_A 290 -----------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTWVATK 339 (563)
T ss_dssp -----------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEEECCS
T ss_pred -----------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheeeeccc
Confidence 23455699999999999998655544 389999999999987665543222
Q ss_pred ---CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC------CCeeecccEEEEc
Q 012261 265 ---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDIGWIA 335 (467)
Q Consensus 265 ---~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~------~gw~~TGD~~~~~ 335 (467)
...+++|.|+++++++|+| +++++++.|+.|||+++|++++.|||++|+.|...|.. ++||+|||+|+++
T Consensus 340 ~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d 418 (563)
T 1amu_A 340 ETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWL 418 (563)
T ss_dssp SCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEEC
T ss_pred ccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEc
Confidence 3567899999999999999 67899999999999999999999999999999888843 4699999999999
Q ss_pred CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 411 (467)
Q Consensus 336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~ 411 (467)
+ ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.+++ .+.|+|+++
T Consensus 419 ~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-------- 479 (563)
T 1amu_A 419 S----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE-------- 479 (563)
T ss_dssp T----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEES--------
T ss_pred C----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeC--------
Confidence 9 9999999999999997 9999999999999999999999999998654 466777764
Q ss_pred HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 480 ----------~~~~~~~l~~~l~~~L~~y-----~~P~~i~~v~~lP~t~~GKi~ 519 (563)
T 1amu_A 480 ----------KHIPLEQLRQFSSEELPTY-----MIPSYFIQLDKMPLTSNGKID 519 (563)
T ss_dssp ----------SCCCHHHHHHHHHHHSCGG-----GSCSEEEECSSCCBCTTSSBC
T ss_pred ----------CCCCHHHHHHHHHhhCchh-----hCCcEEEEecccCCCCCcChh
Confidence 2356788999999999988 578899999999999999985
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.2e-50 Score=433.62 Aligned_cols=322 Identities=22% Similarity=0.275 Sum_probs=200.6
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CH
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AV 105 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~ 105 (467)
-.+++|+|||||||.||+|+++|+ +......++++++|++++++|++|.+++.. .+.++..|+++++. ++
T Consensus 191 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~ 270 (544)
T 3o83_A 191 DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEP 270 (544)
T ss_dssp TSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCH
T ss_pred cceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCH
Confidence 345699999999999999999998 344555678999999999999999999875 56679999999995 68
Q ss_pred HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261 106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 185 (467)
Q Consensus 106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (467)
..+++.++++++|++.++|+++..+.+.....
T Consensus 271 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------------ 302 (544)
T 3o83_A 271 LNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY------------------------------------------------ 302 (544)
T ss_dssp HHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT------------------------------------------------
T ss_pred HHHHHHHHHHCCCEEEechHHHHHHHhchhhc------------------------------------------------
Confidence 89999999999999999999999887742110
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCCC
Q 012261 186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPTC 264 (467)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~~ 264 (467)
...++++|.+++||+++++++.+. .+.+|+++++.||+||++..........
T Consensus 303 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~ 355 (544)
T 3o83_A 303 ---------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSD 355 (544)
T ss_dssp ---------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCH
T ss_pred ---------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCch
Confidence 134567799999999999999554 4567999999999999885544433222
Q ss_pred -CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCC
Q 012261 265 -NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 342 (467)
Q Consensus 265 -~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~ 342 (467)
...+++|.|+ ++++++++| ++++++++|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|++++
T Consensus 356 ~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~------ 428 (544)
T 3o83_A 356 EQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP------ 428 (544)
T ss_dssp HHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT------
T ss_pred hhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC------
Confidence 2457899996 899999999 7899999999999999999999999999999999998899999999999999
Q ss_pred ccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccc
Q 012261 343 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVH 418 (467)
Q Consensus 343 ~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~ 418 (467)
||.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++. +.|+|++++
T Consensus 429 ----dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-------------- 489 (544)
T 3o83_A 429 ----DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-------------- 489 (544)
T ss_dssp ----TSCEEEEEEEC-----------------------------------------------------------------
T ss_pred ----CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC--------------
Confidence 9999999999999995 99999999999999999999999999987654 456666643
Q ss_pred cCcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 419 ADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 419 ~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.+++++++++ .|+.| ..|+.|.++++.|.+.+||+.
T Consensus 490 ---~~~~~~~l~~~~~~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~ 530 (544)
T 3o83_A 490 ---PELKAVVLRRHLMELGIAQY-----KLPDQIKLIESLPLTAVGKVD 530 (544)
T ss_dssp -------------------------------------------------
T ss_pred ---CCCCHHHHHHHHHhCCCCcc-----cCCcEEEEeccCCCCCCCCCc
Confidence 22455678888888 78888 578899999999999999985
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.1e-49 Score=420.60 Aligned_cols=323 Identities=22% Similarity=0.223 Sum_probs=270.3
Q ss_pred CCCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------
Q 012261 35 DLPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------ 103 (467)
Q Consensus 35 ~~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------ 103 (467)
.-.+++|+|||||||.||+|+++|. +......++++++|++++++|++|.+++...+.++..|+++++.
T Consensus 142 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 221 (511)
T 3e7w_A 142 EHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVN 221 (511)
T ss_dssp TTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred CCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhc
Confidence 3456799999999999999999998 33444567899999999999999999988778889999999985
Q ss_pred CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHH
Q 012261 104 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA 183 (467)
Q Consensus 104 ~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (467)
++..+++.++++++|++.++|+++..+.+.... .
T Consensus 222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------~------------- 255 (511)
T 3e7w_A 222 KPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF---------------------------------S------------- 255 (511)
T ss_dssp SHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC---------------------------------S-------------
T ss_pred CHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc---------------------------------c-------------
Confidence 577899999999999999999999887652000 0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccC
Q 012261 184 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARR 261 (467)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~ 261 (467)
...++++|.+++||+++++++. ++.+.+ ++++++.||+||+++..+...
T Consensus 256 -----------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 306 (511)
T 3e7w_A 256 -----------------------------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVE 306 (511)
T ss_dssp -----------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEE
T ss_pred -----------------------------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEe
Confidence 1345677999999999999995 455567 899999999999987766543
Q ss_pred CC-----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC-CC--eeecccEEE
Q 012261 262 PT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGW 333 (467)
Q Consensus 262 ~~-----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~-~g--w~~TGD~~~ 333 (467)
.. ....+++|.|.++++++++| +++++++.|+.|||+++|++++.|||++|+.|...|.. +| ||+|||+|+
T Consensus 307 ~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~ 385 (511)
T 3e7w_A 307 ITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF 385 (511)
T ss_dssp ECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEE
T ss_pred ccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEE
Confidence 21 23557899999999999999 56999999999999999999999999999999998832 33 799999999
Q ss_pred EcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHH
Q 012261 334 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM 409 (467)
Q Consensus 334 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~ 409 (467)
+ + ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++++
T Consensus 386 ~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~---- 449 (511)
T 3e7w_A 386 I-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEH---- 449 (511)
T ss_dssp E-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCC----
T ss_pred c-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccc----
Confidence 9 5 7999999999999997 9999999999999999999999999997654 57788888643
Q ss_pred HHHHccccccCcccCC----HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 410 AAKRLSIVHADASELS----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 410 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
.... .++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 450 ------------~~~~~~~~~~~l~~~l~~~L~~~-----~~P~~~~~v~~lP~t~~GKi~ 493 (511)
T 3e7w_A 450 ------------EFEKEFQLTSAIKKELAASLPAY-----MIPRKFIYQDHIQMTANGKID 493 (511)
T ss_dssp ------------CCSSHHHHHHHHHHHHHHHSCGG-----GSCSEEEECSCCCBCTTSCBC
T ss_pred ------------cccchhhHHHHHHHHHHhhCchh-----hCCeeEEEeccCCCCCCcCcc
Confidence 1122 245666777777677 578899999999999999985
No 16
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.8e-50 Score=433.14 Aligned_cols=321 Identities=18% Similarity=0.184 Sum_probs=196.1
Q ss_pred CCceEEEeeeCCCCCCcceehhhhhH----hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----CHH
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQIR----SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----AVR 106 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~~~----~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----~~~ 106 (467)
-.+++|+|||||||.||||+++|+.. .....++++++|++++++|++|..+....+.++..|+++++. ++.
T Consensus 214 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~ 293 (570)
T 4gr5_A 214 EDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPL 293 (570)
T ss_dssp TSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHH
T ss_pred CCeEEEEECCcCCCCCeEEEEecHHHHHHHHhhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHH
Confidence 34569999999999999999999821 223446788999999999999877776777789999999884 578
Q ss_pred HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261 107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 186 (467)
Q Consensus 107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (467)
.+++.++++++|++.++|+++..+.+..
T Consensus 294 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~---------------------------------------------------- 321 (570)
T 4gr5_A 294 EIGELVARHGVTMLQLSASLFNFLVDEV---------------------------------------------------- 321 (570)
T ss_dssp HHHHHHHHHTCCEEEEEHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHcCCcEEEecHHHHHHHHhhc----------------------------------------------------
Confidence 9999999999999999999999887521
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccCCC-
Q 012261 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT- 263 (467)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~- 263 (467)
...++++|.+++||++++.++ .++.+.+ ++++++.||+||+++..+.....
T Consensus 322 --------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~ 375 (570)
T 4gr5_A 322 --------------------------PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA 375 (570)
T ss_dssp --------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCG
T ss_pred --------------------------hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecc
Confidence 134566799999999999877 5666666 89999999999998766654321
Q ss_pred ---CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC--------CeeecccEE
Q 012261 264 ---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWLNTGDIG 332 (467)
Q Consensus 264 ---~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~--------gw~~TGD~~ 332 (467)
.....++|.|+++++++|+| +++++++.|+.|||+++|++++.|||++|+.|...|..+ |||+|||+|
T Consensus 376 ~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 376 GDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 23456799999999999999 669999999999999999999999999999999988543 799999999
Q ss_pred EEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHH
Q 012261 333 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVL 408 (467)
Q Consensus 333 ~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~ 408 (467)
++++ ||.++|.||+||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++ .+.|+|+++++.
T Consensus 455 ~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-- 521 (570)
T 4gr5_A 455 RRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERAD-- 521 (570)
T ss_dssp EECT----------TSCEEEEEC---------------------------------------------------------
T ss_pred EECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCC--
Confidence 9999 9999999999999997 9999999999999999999999999998654 466777765431
Q ss_pred HHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 409 MAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 522 -------------~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~~GKi~ 561 (570)
T 4gr5_A 522 -------------APPDAAELRRHVAEALPAY-----MVPVECVPVDELPRTPNGKLD 561 (570)
T ss_dssp ----------------------------------------------------------
T ss_pred -------------CCcCHHHHHHHHHhhCccc-----cCCcEEEEcccCCCCCCcCcc
Confidence 3356678999999999999 577899999999999999985
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.9e-49 Score=423.76 Aligned_cols=326 Identities=17% Similarity=0.199 Sum_probs=272.0
Q ss_pred CCceEEEeeeCCCCCCcceehhhhhHh-----hhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec-----C
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQIRS-----LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-----A 104 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~~~~-----~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~-----~ 104 (467)
-.+++|+|||||||.||+|+++|.... ....++++++|++++++|++|++++.. .+.++..|+++++. +
T Consensus 206 ~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 285 (570)
T 3c5e_A 206 QEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFD 285 (570)
T ss_dssp TSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCC
T ss_pred CCcEEEEECCCCCCCCCEEEechHHHHhhhhhhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCC
Confidence 345699999999999999999998221 114567889999999999999999874 56679999998874 6
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.++++++|++.++|+++..+.+.. ..
T Consensus 286 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------~~------------------------------------------ 317 (570)
T 3c5e_A 286 PLVILKTLSSYPIKSMMGAPIVYRMLLQQD------LS------------------------------------------ 317 (570)
T ss_dssp HHHHHHHHHHSCCCEEEECHHHHHHHHTSC------TT------------------------------------------
T ss_pred HHHHHHHHHHhCCeEEeccHHHHHHHHhcc------cc------------------------------------------
Confidence 889999999999999999999999886520 00
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HHHHhCCceeeccccccccccccccCCC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPT 263 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~~~~ 263 (467)
..+++++|.+++||+++++++.+ +.+.+|+++++.||+||++..++.....
T Consensus 318 ----------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~ 369 (570)
T 3c5e_A 318 ----------------------------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM 369 (570)
T ss_dssp ----------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS
T ss_pred ----------------------------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCccc
Confidence 02456679999999999999854 5556799999999999998766555444
Q ss_pred CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEe-----CCCcCcccCCCccccccccCCCCeeecccEEEEcCCC
Q 012261 264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 338 (467)
Q Consensus 264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~-----~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~ 338 (467)
....+++|.|+++++++|+| ++++++|.|+.|||+++ |++++.|||++|+.|...| .+|||+|||+|++++
T Consensus 370 ~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~-- 445 (570)
T 3c5e_A 370 KIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDE-- 445 (570)
T ss_dssp CCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECT--
T ss_pred ccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcC--
Confidence 45778999999999999999 56899999999999999 9999999999999999998 489999999999999
Q ss_pred CCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHc
Q 012261 339 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL 414 (467)
Q Consensus 339 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~ 414 (467)
||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.+++ .+.|+|+++++..
T Consensus 446 --------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------- 509 (570)
T 3c5e_A 446 --------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL------- 509 (570)
T ss_dssp --------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT-------
T ss_pred --------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc-------
Confidence 9999999999999996 9999999999999999999999999998654 4568888765420
Q ss_pred cccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 415 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 415 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
....+...++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 510 ----~~~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 552 (570)
T 3c5e_A 510 ----SHDPEQLTKELQQHVKSVTAPY-----KYPRKIEFVLNLPKTVTGKIQ 552 (570)
T ss_dssp ----TSCHHHHHHHHHHHHHHHSCGG-----GSCSEEEEESCCCBCTTCCBC
T ss_pred ----CcchHHHHHHHHHHHHhhCccc-----cCCcEEEEeccCCCCCCcCCc
Confidence 0000112456777777777777 578899999999999999985
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.6e-49 Score=419.92 Aligned_cols=322 Identities=20% Similarity=0.190 Sum_probs=266.1
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------C
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------A 104 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~ 104 (467)
-.+++|+|||||||.||+|+++|. +......++++++|++++++|++|.+++...+.++..|+++++. +
T Consensus 144 ~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~ 223 (512)
T 3fce_A 144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIAR 223 (512)
T ss_dssp TSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHS
T ss_pred CCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhC
Confidence 455699999999999999999998 33444567899999999999999999987778889999999985 5
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.++++++|++.++|+++..+...... .
T Consensus 224 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------~-------------- 256 (512)
T 3fce_A 224 PKDLFASLEQSDIQVWTSTPSFAEMCLMEASF---------------------------------S-------------- 256 (512)
T ss_dssp HHHHHHHHHHHCCCEEEECHHHHHHHTTSTTC---------------------------------S--------------
T ss_pred HHHHHHHHHHcCCcEEEecHHHHHHHHhhccc---------------------------------c--------------
Confidence 77899999999999999999999887542100 0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh-CCceeeccccccccccccccCC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIAARRP 262 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~~~~~ 262 (467)
...++++|.+++||+++++++. ++.+.+ ++++++.||+||+++..+....
T Consensus 257 ----------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 308 (512)
T 3fce_A 257 ----------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV 308 (512)
T ss_dssp ----------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred ----------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence 1346677999999999999994 555567 8999999999999877665433
Q ss_pred CC-----CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcccccccc---CCCCeeecccEEEE
Q 012261 263 TC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDIGWI 334 (467)
Q Consensus 263 ~~-----~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~---~~~gw~~TGD~~~~ 334 (467)
.. ...+++|.|.++++++++| ++++++++|+.|||+++|++++.|||++|+.|...| +++|||+|||+|++
T Consensus 309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 21 3567899999999999999 779999999999999999999999999999999887 45779999999999
Q ss_pred cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHH
Q 012261 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA 410 (467)
Q Consensus 335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~ 410 (467)
+ ||.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.++. .+.|+|+++++
T Consensus 388 -~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~----- 450 (512)
T 3fce_A 388 -E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH----- 450 (512)
T ss_dssp -E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC-----
T ss_pred -c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc-----
Confidence 6 8999999999999997 9999999999999999999999999987553 46688887643
Q ss_pred HHHccccccCcccCC----HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 411 AKRLSIVHADASELS----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 411 ~~~~~~~~~~~~~~~----~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+ .++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 451 -----------~~~~~~~~~~~l~~~l~~~L~~~-----~~P~~~~~~~~lP~t~~GKi~ 494 (512)
T 3fce_A 451 -----------SFEKEFKLTSAIKKELNERLPNY-----MIPRKFMYQSSIPMTPNGKVD 494 (512)
T ss_dssp -----------CCSSHHHHHHHHHHHHHTTSCGG-----GSCSEEEECSCCCBCTTSSBC
T ss_pred -----------cccchhhhHHHHHHHHHhhCchh-----cCCeEEEEecccCCCCCcChH
Confidence 1112 235666666666666 578899999999999999985
No 19
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9.9e-49 Score=414.14 Aligned_cols=311 Identities=21% Similarity=0.260 Sum_probs=261.7
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec---CHHH
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRN 107 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---~~~~ 107 (467)
-.+++|+|||||||.||+|+++|. .......++++++|++++++|++|++++...+.++..|+++++. ++..
T Consensus 163 ~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~ 242 (501)
T 3ipl_A 163 DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQ 242 (501)
T ss_dssp TSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHH
T ss_pred CCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHH
Confidence 456799999999999999999998 33445567899999999999999999998877889999999995 6899
Q ss_pred HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261 108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW 187 (467)
Q Consensus 108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (467)
+++.++++++|++.++|+++..|.+...
T Consensus 243 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------------------------- 270 (501)
T 3ipl_A 243 ILTMIKNERITHISLVPQTLNWLMQQGL---------------------------------------------------- 270 (501)
T ss_dssp HHHHHHHSCCCEEEECHHHHHHHHHHTC----------------------------------------------------
T ss_pred HHHHHHHcCCcEEEchHHHHHHHHhcCC----------------------------------------------------
Confidence 9999999999999999999998876210
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCC--CC
Q 012261 188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT--CN 265 (467)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~ 265 (467)
....++|.+++||+++++++.+.+..+++++++.||+||+++..+..... ..
T Consensus 271 --------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 324 (501)
T 3ipl_A 271 --------------------------HEPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHA 324 (501)
T ss_dssp --------------------------CSCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECHHHHHH
T ss_pred --------------------------CCcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCcccccc
Confidence 00014599999999999999776667899999999999998765554332 23
Q ss_pred CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccc
Q 012261 266 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR 345 (467)
Q Consensus 266 ~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~ 345 (467)
..+++|.|+++++++++|++ .|+.|||+++|++++.|||++++.+.. + .+|||+|||+|++++
T Consensus 325 ~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~--------- 387 (501)
T 3ipl_A 325 RPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH--------- 387 (501)
T ss_dssp CTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT---------
T ss_pred CCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC---------
Confidence 67899999999999999954 466899999999999999999999987 5 689999999999999
Q ss_pred cCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCc
Q 012261 346 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADA 421 (467)
Q Consensus 346 ~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~ 421 (467)
+|.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|+|.+++. +.++++..
T Consensus 388 -~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~------------------ 447 (501)
T 3ipl_A 388 -EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE------------------ 447 (501)
T ss_dssp -TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES------------------
T ss_pred -CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC------------------
Confidence 9999999999999995 99999999999999999999999999987664 44666653
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 448 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 487 (501)
T 3ipl_A 448 SDISKAQLIAYLSKHLAKY-----KVPKHFEKVDTLPYTSTGKLQ 487 (501)
T ss_dssp SCCCHHHHHHHHHHHSCGG-----GSCSEEEECSSCC--------
T ss_pred CCCCHHHHHHHHHhhCccc-----cCCCEEEEecccCCCCCCCEe
Confidence 4467889999999999998 578899999999999999985
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.1e-49 Score=432.48 Aligned_cols=333 Identities=15% Similarity=0.145 Sum_probs=272.4
Q ss_pred CCceEEEeeeCCCCCCcceehhhhh------HhhhcccCCCCCCEEEEECChhHHHHHH-HhHHHhhcCceEEec-----
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQI------RSLYDIVPAENGDKFLSMLPPWHVYERA-CGYFIFSRGIELMYT----- 103 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~~------~~~~~~~~~~~~d~~l~~lPl~h~~g~~-~~~~~l~~G~~~v~~----- 103 (467)
-.+++|+|||||||.||||+++|.. ......++++++|++++..|++|+++.. ..+.+|..|+++++.
T Consensus 262 ~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~ 341 (663)
T 1ry2_A 262 EDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPA 341 (663)
T ss_dssp TSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTT
T ss_pred CCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCC
Confidence 3456999999999999999999981 1233457899999999999999999984 456789999998884
Q ss_pred --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261 104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 181 (467)
Q Consensus 104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (467)
++..+++.++++++|++.++|+++..+.+...+. .
T Consensus 342 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-------------------------------~------------ 378 (663)
T 1ry2_A 342 YPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY-------------------------------I------------ 378 (663)
T ss_dssp SSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS-------------------------------S------------
T ss_pred CCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc-------------------------------c------------
Confidence 4678999999999999999999998886521000 0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhC---Cceeeccccccccccc
Q 012261 182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIG---VKVQVGYGLTESSPVI 257 (467)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g---~~v~~~YG~TE~~~~~ 257 (467)
-..+++++|.+++||+++++++.+++. .+| +++++.||+||+++.+
T Consensus 379 ------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~ 428 (663)
T 1ry2_A 379 ------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 428 (663)
T ss_dssp ------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCS
T ss_pred ------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCee
Confidence 003567789999999999999966655 567 8999999999998766
Q ss_pred cccCC---CCCCCCcccccCCCeEEEEEeCCCCcccCC-CCceEEEEeC--CCcCcccCCCccccccccCC--CCeeecc
Q 012261 258 AARRP---TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWLNTG 329 (467)
Q Consensus 258 ~~~~~---~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~-g~~GEL~v~~--~~~~~gY~~~~~~t~~~~~~--~gw~~TG 329 (467)
+...+ ...+++++|.|+++++++|+|++++++++. |+.|||+++| |+++.|||++++.+...+.. +|||+||
T Consensus 429 ~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TG 508 (663)
T 1ry2_A 429 VTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG 508 (663)
T ss_dssp EECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE
T ss_pred eccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcC
Confidence 65543 234679999999999999999658999998 9999999999 58999999999998887744 8999999
Q ss_pred cEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChH
Q 012261 330 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE 405 (467)
Q Consensus 330 D~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~ 405 (467)
|+|++++ ||.++|.||+||+||+ +|++|+|.|||++|.+||.|.+++|+|.+++ .+.|+|+++++
T Consensus 509 Dlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~ 577 (663)
T 1ry2_A 509 DGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNK 577 (663)
T ss_dssp EEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--
T ss_pred CEEEEcC----------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCC
Confidence 9999999 9999999999999997 8999999999999999999999999998653 58899998765
Q ss_pred HHHHHHHHccccccC-ccc--CCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 406 EVLMAAKRLSIVHAD-ASE--LSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 406 ~~~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
.... .. ..+ -..++++++++++|..| .+|+.|+++++.|.+.+||+.
T Consensus 578 ~~~~---------~~~~~~~~~l~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~T~sGKi~ 627 (663)
T 1ry2_A 578 SSWS---------TATDDELQDIKKHLVFTVRKDIGPF-----AAPKLIILVDDLPKTRSGKIM 627 (663)
T ss_dssp -------------------CCSHHHHHHHHHHHHTCTT-----TSCSEEEECSCCCBCTTSCBC
T ss_pred Cccc---------cccchhHHHHHHHHHHHHHHhCCCC-----cCCeEEEEcCCCCCCCccCch
Confidence 2100 00 000 11456777777777777 588999999999999999984
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=9.4e-49 Score=417.21 Aligned_cols=325 Identities=21% Similarity=0.289 Sum_probs=260.2
Q ss_pred CCceEEEeeeCCCCCCcceehhhhhH------hhhcccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec----C
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQIR------SLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT----A 104 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~~~------~~~~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~----~ 104 (467)
-.+++|+|||||||.||+|+++|+.. .....+++.++|++++++|++|.+++... +.++..|+++++. +
T Consensus 183 ~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~ 262 (529)
T 2v7b_A 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPT 262 (529)
T ss_dssp TSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCC
T ss_pred CCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCC
Confidence 34569999999999999999999832 12234678899999999999999998754 5679999999974 6
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.++++++|++.++|+++..+.+.... + .
T Consensus 263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~-------------------------~---------------- 296 (529)
T 2v7b_A 263 ADAIFARLVEHRPTVFYGVPTLYANMLVSPNL-----P-------------------------A---------------- 296 (529)
T ss_dssp HHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-----C-------------------------C----------------
T ss_pred HHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-----c-------------------------c----------------
Confidence 88999999999999999999999888652000 0 0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHH-HHHhCCceeeccccccccccccccCCC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPT 263 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~ 263 (467)
....++|.+++||+++++++.+. .+.+|+++++.||+||+++..+.+...
T Consensus 297 -----------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~ 347 (529)
T 2v7b_A 297 -----------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAG 347 (529)
T ss_dssp -----------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTT
T ss_pred -----------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccC
Confidence 10125699999999999999554 456799999999999997766665554
Q ss_pred CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261 264 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 343 (467)
Q Consensus 264 ~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~ 343 (467)
....+++|.|+++++++++| ++++++|+|+.|||+++|++++.|||++++.|...| .+|||+|||+|++++
T Consensus 348 ~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~------- 418 (529)
T 2v7b_A 348 AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLP------- 418 (529)
T ss_dssp CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT-------
T ss_pred CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECC-------
Confidence 46778999999999999999 679999999999999999999999999999999998 489999999999999
Q ss_pred cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC---CceEEEEecChHHHHHHHHHccccccC
Q 012261 344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHAD 420 (467)
Q Consensus 344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~ 420 (467)
+|.+++.||+||+||+ +|++|+|.|||++|.+||+|.+++|++... +.+.++|+++++. .
T Consensus 419 ---~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~-------------~ 481 (529)
T 2v7b_A 419 ---NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF-------------A 481 (529)
T ss_dssp ---TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C
T ss_pred ---CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC-------------C
Confidence 9999999999999997 999999999999999999999999999822 3467888876431 0
Q ss_pred cccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 421 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 421 ~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
..+...++++++++++|+.| +.|+.|.++++.|.+.+||+.
T Consensus 482 ~~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 522 (529)
T 2v7b_A 482 PSEILAEELKAFVKDRLAPH-----KYPRDIVFVDDLPKTATGKIQ 522 (529)
T ss_dssp CCHHHHHHHHHHHHTTSCTT-----TSCSEEEEESCCCBCTTSCBC
T ss_pred cchhHHHHHHHHHHhhcchh-----hCCeEEEEeccCCCCCccchh
Confidence 00112345666666666666 578999999999999999985
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.2e-48 Score=421.04 Aligned_cols=322 Identities=20% Similarity=0.290 Sum_probs=274.1
Q ss_pred CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH--hHHHhhcCceEEec---CHH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT---AVR 106 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~--~~~~l~~G~~~v~~---~~~ 106 (467)
.+++|+|||||||.||||+++|+ +......+++.++|++++++|++|.++... .+.++..|+++++. ++.
T Consensus 185 ~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~ 264 (617)
T 3rg2_A 185 EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSAT 264 (617)
T ss_dssp SEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHH
T ss_pred CeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHH
Confidence 45699999999999999999998 334455678999999999999999999874 56779999999995 578
Q ss_pred HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261 107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 186 (467)
Q Consensus 107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (467)
.+++.++++++|++.++|+++..+.+......
T Consensus 265 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------------ 296 (617)
T 3rg2_A 265 LCFPLIEKHQVNVTALVPPAVSLWLQALIEGE------------------------------------------------ 296 (617)
T ss_dssp HHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC------------------------------------------------
T ss_pred HHHHHHHHhCCcEEEcchHHHHHHHHhhhccc------------------------------------------------
Confidence 89999999999999999999999877432210
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHhCCceeeccccccccccccccCCCC-
Q 012261 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAARRPTC- 264 (467)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~- 264 (467)
....++++|.+++||+++++++. ++.+.+|+++++.||+||++..........
T Consensus 297 -------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 297 -------------------------SRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp -------------------------CTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred -------------------------ccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 01356677999999999999985 455577999999999999986554433221
Q ss_pred CCCCcccccC-CCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCc
Q 012261 265 NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 343 (467)
Q Consensus 265 ~~~g~vG~p~-~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~ 343 (467)
....++|.|+ ++.+++++| ++++++|.|+.|||+++|++++.|||++|+.|...|..+|||+|||+|++++
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~------- 423 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP------- 423 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT-------
T ss_pred ccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC-------
Confidence 2345789997 788999999 7799999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHcccccc
Q 012261 344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA 419 (467)
Q Consensus 344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~ 419 (467)
||.+++.||+||+||+ +|++|+|.|||+.|.+||+|.+++|++.+++ .+.+++++.
T Consensus 424 ---dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~---------------- 483 (617)
T 3rg2_A 424 ---EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK---------------- 483 (617)
T ss_dssp ---TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES----------------
T ss_pred ---CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeC----------------
Confidence 9999999999999996 9999999999999999999999999997654 466777775
Q ss_pred CcccCCHHHHHHHHHH-HHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 420 DASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 420 ~~~~~~~~~l~~~~~~-~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.+++.+++++ .|+.| ..|+.|.++++.|.+.|||++
T Consensus 484 --~~~~~~~l~~~l~~~~lp~~-----~vP~~~~~v~~lP~t~~GKid 524 (617)
T 3rg2_A 484 --EPLRAVQVRRFLREQGIAEF-----KLPDRVECVDSLPLTAVGKVD 524 (617)
T ss_dssp --SCCCHHHHHHHHHTTTCCGG-----GSCSEEEECSCCCBCTTSSBC
T ss_pred --CCCCHHHHHHHHHhCCCccc-----cCCcEEEEecccCCCCCCCCc
Confidence 23567788888887 57777 578899999999999999985
No 23
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.4e-49 Score=418.67 Aligned_cols=316 Identities=22% Similarity=0.286 Sum_probs=191.3
Q ss_pred CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHh-hcCceEEec--CHHHH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIF-SRGIELMYT--AVRNL 108 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l-~~G~~~v~~--~~~~l 108 (467)
.+++|+|||||||.||+|+++|+ +......++++++|++++++|++|++++...+.++ ..|+.++.. ++..+
T Consensus 161 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (509)
T 3ivr_A 161 DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQA 240 (509)
T ss_dssp SEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH
T ss_pred ccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHH
Confidence 44599999999999999999998 33445667899999999999999999998777764 445555543 78999
Q ss_pred HHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHH
Q 012261 109 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL 188 (467)
Q Consensus 109 ~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (467)
++.++++++|++.++|+++..+.+...
T Consensus 241 ~~~i~~~~~t~~~~~p~~~~~l~~~~~----------------------------------------------------- 267 (509)
T 3ivr_A 241 ARDIEAHKVTVMAEFAPMLGNILDQAA----------------------------------------------------- 267 (509)
T ss_dssp HHHHHHHTCCEEEEETTHHHHHHHHCC-----------------------------------------------------
T ss_pred HHHHHHHCCcEEEecHHHHHHHHhccc-----------------------------------------------------
Confidence 999999999999999999999876310
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHh-CCceeeccccccccccccccCCCCCCC
Q 012261 189 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVL 267 (467)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~ 267 (467)
...++.+|.++++|++ ....++.+.+ ++++++.||+||+++..+..... ...
T Consensus 268 ------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~ 320 (509)
T 3ivr_A 268 ------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRP 320 (509)
T ss_dssp ------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GST
T ss_pred ------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCC
Confidence 1455667999999988 3346666677 99999999999999876665433 234
Q ss_pred CcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccC
Q 012261 268 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG 347 (467)
Q Consensus 268 g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~ 347 (467)
.++|.|+++++++++| +.+++++.|+.|||+++|++++.|||++|+.|...| .+|||+|||+|++++ |
T Consensus 321 ~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~----------d 388 (509)
T 3ivr_A 321 KSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDA----------D 388 (509)
T ss_dssp TSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECT----------T
T ss_pred CcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECC----------C
Confidence 5699999999999999 558999999999999999999999999999999999 489999999999999 9
Q ss_pred ceEEEEccC--CCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCc----eEEEEecChHHHHHHHHHccccccCc
Q 012261 348 GVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADA 421 (467)
Q Consensus 348 G~l~i~GR~--~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~ 421 (467)
|.+++.||+ ||+||+ +|++|+|.|||++|.+||+|.+++|+|.+++. +.++|+++++
T Consensus 389 G~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---------------- 451 (509)
T 3ivr_A 389 GYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG---------------- 451 (509)
T ss_dssp SCEEEEEEC-----------------------------------------------------------------------
T ss_pred ceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----------------
Confidence 999999999 999996 99999999999999999999999999987764 5577776543
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 422 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 422 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 452 ~~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKid 491 (509)
T 3ivr_A 452 ESIAADALAEFVASLIARY-----KKPKHVVFVEALPKDAKGAID 491 (509)
T ss_dssp ---------------------------------------------
T ss_pred CCCCHHHHHHHHHhhCccc-----CCCcEEEEecCCCCCCCCCcc
Confidence 3456678999999999999 578899999999999999985
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.5e-49 Score=417.01 Aligned_cols=326 Identities=17% Similarity=0.163 Sum_probs=261.4
Q ss_pred CCCceEEEeeeCCCCCCcceehhhhh-----Hhhhc--ccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----
Q 012261 35 DLPLFSFVLIDLNTWMPIPKMTNFQI-----RSLYD--IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---- 103 (467)
Q Consensus 35 ~~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~~--~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~---- 103 (467)
.-.+++|+|||||||.||+|+++|+. ..... .++..++|+++...|++|.++....+.++..|+++++.
T Consensus 144 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 223 (521)
T 3l8c_A 144 GDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKEL 223 (521)
T ss_dssp TTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGG
T ss_pred CCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHH
Confidence 34567999999999999999999981 11222 26778899999999999999887777789999999885
Q ss_pred --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261 104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 181 (467)
Q Consensus 104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (467)
++..+++.++++++|++.++|+++..+......
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------------------------- 258 (521)
T 3l8c_A 224 VADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF--------------------------------------------- 258 (521)
T ss_dssp TTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC---------------------------------------------
T ss_pred hhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc---------------------------------------------
Confidence 577899999999999999999999877541000
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccc
Q 012261 182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA 259 (467)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~ 259 (467)
....++++|.+++||+++++++ +++.+.+ ++++++.||+||+++..+.
T Consensus 259 ------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 308 (521)
T 3l8c_A 259 ------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSA 308 (521)
T ss_dssp ------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEE
T ss_pred ------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhce
Confidence 0134667799999999999998 5556677 8999999999999877665
Q ss_pred cCCC-----CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcccccccc---CCCCeeecccE
Q 012261 260 RRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDI 331 (467)
Q Consensus 260 ~~~~-----~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~---~~~gw~~TGD~ 331 (467)
.... ....+++|.|.++++++++| +++++++.|+.|||+++|++++.|||++|+.|...| +++|||+|||+
T Consensus 309 ~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl 387 (521)
T 3l8c_A 309 IEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDI 387 (521)
T ss_dssp EEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred eecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCE
Confidence 4322 13567899999999999999 669999999999999999999999999999999987 56789999999
Q ss_pred EEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC-----CceEEEEecChHH
Q 012261 332 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ-----RRPGAIIVPDKEE 406 (467)
Q Consensus 332 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~-----~~~~a~vv~~~~~ 406 (467)
|++++ +|.+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++..+ +.+.|+|+++++.
T Consensus 388 g~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~ 456 (521)
T 3l8c_A 388 GSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV 456 (521)
T ss_dssp EEECS----------SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred EEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence 99999 9999999999999997 899999999999999999999999998643 3577889887542
Q ss_pred HHHHHHHccccccCcccCC-----HHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 407 VLMAAKRLSIVHADASELS-----KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
. ...+ .++++++++++|+.| ..|+.|.++++.|.+.+||++
T Consensus 457 ~--------------~~~~~~~~~~~~l~~~l~~~l~~~-----~~P~~i~~v~~lP~t~~GKid 502 (521)
T 3l8c_A 457 K--------------ERFDRELELTKAIKASVKDHMMSY-----MMPSKFLYRDSLPLTPNGKID 502 (521)
T ss_dssp G--------------GGCSSHHHHHHHHHHHSGGGSCGG-----GSCSEEEECSSCCBCTTSSBC
T ss_pred c--------------cccccchhhHHHHHHHHHhhCccc-----cCCeEEEEecccCCCCCcCcc
Confidence 0 1111 345666666666666 577899999999999999985
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.9e-48 Score=420.69 Aligned_cols=314 Identities=16% Similarity=0.103 Sum_probs=260.0
Q ss_pred CceEEEeeeCCCCCCcceehhhhh----HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-----CHHH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQI----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-----AVRN 107 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~~----~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-----~~~~ 107 (467)
.+++|+|||||||.||||+++|+. ......+++.++|++++++|++|.++....+.++..|+++++. ++..
T Consensus 165 d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 244 (620)
T 4dg8_A 165 QIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGV 244 (620)
T ss_dssp SEEEEEEEBSSSSSCEEEEEEHHHHHHHHSSCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHH
T ss_pred CeEEEEECCCccccCeEEEEchHHHHHHHHHHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHH
Confidence 456999999999999999999982 1223456788999999999999999988888889999999984 5889
Q ss_pred HHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHH
Q 012261 108 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDW 187 (467)
Q Consensus 108 l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (467)
+++.++++++|++.++|+++..+.+..
T Consensus 245 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~----------------------------------------------------- 271 (620)
T 4dg8_A 245 LRQLIGERGADSAWLTASLFNTLVDLD----------------------------------------------------- 271 (620)
T ss_dssp HHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------------
T ss_pred HHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------------
Confidence 999999999999999999998886510
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccCCC--
Q 012261 188 LWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT-- 263 (467)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-- 263 (467)
...++++|.+++||+++++++ .++.+.+ ++++++.||+||++...+.....
T Consensus 272 -------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~ 326 (620)
T 4dg8_A 272 -------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD 326 (620)
T ss_dssp -------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTG
T ss_pred -------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccc
Confidence 034566799999999999776 6666665 89999999999998766543321
Q ss_pred --CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCC-------CeeecccEEEE
Q 012261 264 --CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNTGDIGWI 334 (467)
Q Consensus 264 --~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~-------gw~~TGD~~~~ 334 (467)
....+++|.|+++++++|+|++....+|.|+.|||+++|++++.|||++|+.|...|..+ +||+|||+|++
T Consensus 327 ~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 327 DLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred ccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 235679999999999999995544448999999999999999999999999999998653 79999999999
Q ss_pred cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCCceEE---EEecChHHHHHHH
Q 012261 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA---IIVPDKEEVLMAA 411 (467)
Q Consensus 335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a---~vv~~~~~~~~~~ 411 (467)
++ ||.++++||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++.... +++...
T Consensus 407 ~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~------- 468 (620)
T 4dg8_A 407 DE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKA------- 468 (620)
T ss_dssp CT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECT-------
T ss_pred CC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecCh-------
Confidence 99 9999999999999998 99999999999999999999999999987665443 333221
Q ss_pred HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
+.+.+.+.++|+.| ..|+.|.++++.|.+.|||++
T Consensus 469 ---------------~~~~~~l~~~Lp~y-----~~P~~~~~v~~lP~t~~GKid 503 (620)
T 4dg8_A 469 ---------------DASPQALLRQLPTW-----QRPHACVRVEALPLTAHGKLD 503 (620)
T ss_dssp ---------------TCCCHHHHHHSCGG-----GSCSEEEECSSCCCC----CC
T ss_pred ---------------HHHHHHHHHhChhh-----cCCcEEEEECcCCCCcccCHh
Confidence 12335566778888 578899999999999999985
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.3e-48 Score=444.98 Aligned_cols=324 Identities=25% Similarity=0.365 Sum_probs=203.5
Q ss_pred CCceEEEeeeCCCCCCcceehhhhh-----Hhhh----cccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec--
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQI-----RSLY----DIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-- 103 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~----~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~-- 103 (467)
-.+++|+|||||||.||+|+++|+. .... ..+++.++|++++++|++|++++... +.++..|+++++.
T Consensus 225 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~ 304 (979)
T 3tsy_A 225 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK 304 (979)
T ss_dssp TSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSS
T ss_pred cceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCC
Confidence 3456999999999999999999981 1111 24567889999999999999998655 5569999999985
Q ss_pred -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261 104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 182 (467)
Q Consensus 104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (467)
++..+++.++++++|++.++|+++..+.+.....
T Consensus 305 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------- 339 (979)
T 3tsy_A 305 FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE--------------------------------------------- 339 (979)
T ss_dssp CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG---------------------------------------------
T ss_pred CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc---------------------------------------------
Confidence 6889999999999999999999999887621100
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHh-CCceeecccccccccccccc
Q 012261 183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAI-GVKVQVGYGLTESSPVIAAR 260 (467)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~ 260 (467)
..+++++|.+++||+++++++.+.+ +.+ ++++++.||+||++++.+.+
T Consensus 340 ------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 389 (979)
T 3tsy_A 340 ------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS 389 (979)
T ss_dssp ------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEEC
T ss_pred ------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhC
Confidence 1346677999999999999985554 566 89999999999999765543
Q ss_pred C-----CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEc
Q 012261 261 R-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 335 (467)
Q Consensus 261 ~-----~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~ 335 (467)
. +.....+++|.|+++++++|+|++++++++.|+.|||+++|++++.|||++|+.|...|+.+|||+|||+|+++
T Consensus 390 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~ 469 (979)
T 3tsy_A 390 LGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469 (979)
T ss_dssp GGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred CCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEc
Confidence 2 22346789999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHH
Q 012261 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 411 (467)
Q Consensus 336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~ 411 (467)
+ ||.++++||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ .+.++|+++++
T Consensus 470 ~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~------ 532 (979)
T 3tsy_A 470 D----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD------ 532 (979)
T ss_dssp T----------TSCEEEEEESCC---------------------------------------------------------
T ss_pred C----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC------
Confidence 9 9999999999999997 9999999999999999999999999997664 45677776543
Q ss_pred HHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 412 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.++++++++++|+.| ..|+.|.++++.|.+.+||+.
T Consensus 533 ----------~~~~~~~l~~~l~~~l~~~-----~~p~~i~~v~~lP~t~~GKi~ 572 (979)
T 3tsy_A 533 ----------SELSEDDVKQFVSKQVVFY-----KRINKVFFTESIPKAPSGKIL 572 (979)
T ss_dssp -------------------------------------------------------
T ss_pred ----------CCCCHHHHHHHHHHhcccc-----cCCeEEEEeCCcCcCCCCCee
Confidence 3456678999999999999 578899999999999999985
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.3e-46 Score=405.17 Aligned_cols=327 Identities=17% Similarity=0.227 Sum_probs=263.2
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec------
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT------ 103 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~------ 103 (467)
-.+++|+|||||||.||||+++|+ +......++++++|++++++|++|++++.. .+.++..|+++++.
T Consensus 167 ~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~ 246 (590)
T 3kxw_A 167 NDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFL 246 (590)
T ss_dssp TSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHH
T ss_pred CCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHH
Confidence 345799999999999999999998 334455678999999999999999999986 56779999999985
Q ss_pred -CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHH
Q 012261 104 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 182 (467)
Q Consensus 104 -~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (467)
++..+++.++++++|++.++|.++..+.+.+.....
T Consensus 247 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------------------------------- 283 (590)
T 3kxw_A 247 QNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK------------------------------------------- 283 (590)
T ss_dssp HCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-------------------------------------------
T ss_pred HCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-------------------------------------------
Confidence 467889999999999999999999888763221100
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHH-HHHHHh------CCceeeccccccccc
Q 012261 183 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI------GVKVQVGYGLTESSP 255 (467)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~-~~~~~~------g~~v~~~YG~TE~~~ 255 (467)
...+++++|.+++||+++++++. ++.+.+ +.++++.||+||+++
T Consensus 284 -----------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~ 334 (590)
T 3kxw_A 284 -----------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATL 334 (590)
T ss_dssp -----------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSS
T ss_pred -----------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccc
Confidence 01356677999999999999984 455565 247999999999998
Q ss_pred cccccCCC---------------------------CCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcc
Q 012261 256 VIAARRPT---------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQG 308 (467)
Q Consensus 256 ~~~~~~~~---------------------------~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~g 308 (467)
..+..... ....+++|.|+++ ++|+|++++.+++.|+.|||+++|++++.|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~G 412 (590)
T 3kxw_A 335 LVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKG 412 (590)
T ss_dssp EEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCC
T ss_pred eeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCccccc
Confidence 76654321 1234688999988 888998889999999999999999999999
Q ss_pred cCCCccccccccCC------CC--eeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHH-Hc
Q 012261 309 YFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-LR 379 (467)
Q Consensus 309 Y~~~~~~t~~~~~~------~g--w~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l-~~ 379 (467)
||++|+.|..+|.. +| ||+|||+|+++ +|.++|.||+||+||+ +|++|+|.|||++| ..
T Consensus 413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~ 480 (590)
T 3kxw_A 413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHS 480 (590)
T ss_dssp BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----------TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHS
T ss_pred ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----------CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhc
Confidence 99999999999854 25 99999999998 4899999999999997 99999999999999 78
Q ss_pred CcCcc--eEEEEeeCCC---ceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccc-cEEE
Q 012261 380 SSLIR--QIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHV 453 (467)
Q Consensus 380 ~p~V~--~~~Vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~-~i~~ 453 (467)
+|.|. +++|++.+++ .+.+++++.++. ....+.+++.+++++.|.++. ..+. .+.+
T Consensus 481 ~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~l~~~l~~~l~~~~----~~p~~~i~~ 542 (590)
T 3kxw_A 481 PLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRF--------------MDDVAQDNLFNEIFELVYENH----QLEVHTIVL 542 (590)
T ss_dssp GGGGGEEEEEEEEEEETTEEEEEEEEEESCTT--------------CCHHHHHHHHHHHHHHHHHHH----SCCCCEEEE
T ss_pred CccccCccEEEEEecCCCCceEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHc----CCceeEEEE
Confidence 99998 8999987543 456777765431 023456789999999998631 2332 5666
Q ss_pred e--CCCCCCCCCccC
Q 012261 454 V--DEPFTVNFLCLA 466 (467)
Q Consensus 454 ~--~~~~~~~~g~~~ 466 (467)
+ ++.|.+.+||+.
T Consensus 543 v~~~~lP~t~sGKi~ 557 (590)
T 3kxw_A 543 IPLKAMPHTTSGKIR 557 (590)
T ss_dssp EETTCSCCCSCHHHH
T ss_pred ECCCccCcCCCcHHH
Confidence 6 699999999973
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.9e-46 Score=399.17 Aligned_cols=324 Identities=18% Similarity=0.240 Sum_probs=261.2
Q ss_pred CCceEEEeeeCCCCCCcceehhhh-----hHhhh-cccCCCCCCEEEEECChhHHHHHHHh-HHHhhcCceEEec-----
Q 012261 36 LPLFSFVLIDLNTWMPIPKMTNFQ-----IRSLY-DIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT----- 103 (467)
Q Consensus 36 ~~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~-~~~~~~~~d~~l~~lPl~h~~g~~~~-~~~l~~G~~~v~~----- 103 (467)
-.+++|+|||||||.||+|+++|+ +.... ..++++++|++++++|++|++++... +.++..|+++++.
T Consensus 176 ~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~ 255 (576)
T 3gqw_A 176 NDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDF 255 (576)
T ss_dssp TSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHH
T ss_pred CCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHh
Confidence 345699999999999999999998 11222 23788999999999999999998764 4568899988874
Q ss_pred --CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhH
Q 012261 104 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 181 (467)
Q Consensus 104 --~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (467)
++..+++.++++++|++.++|+++..+.+......
T Consensus 256 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------- 292 (576)
T 3gqw_A 256 AMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD------------------------------------------- 292 (576)
T ss_dssp HHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH-------------------------------------------
T ss_pred hhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc-------------------------------------------
Confidence 46788999999999999999999987765321110
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh------CCceeecccccccc
Q 012261 182 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGYGLTESS 254 (467)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~------g~~v~~~YG~TE~~ 254 (467)
....+++++|.+++||+++++++ .++.+.+ +.++++.||+||++
T Consensus 293 -----------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 343 (576)
T 3gqw_A 293 -----------------------------LAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENA 343 (576)
T ss_dssp -----------------------------HTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGS
T ss_pred -----------------------------cccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCccccc
Confidence 00134667799999999999998 4455565 67899999999999
Q ss_pred ccccccCCCCC----------------------------CCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcC
Q 012261 255 PVIAARRPTCN----------------------------VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 306 (467)
Q Consensus 255 ~~~~~~~~~~~----------------------------~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~ 306 (467)
...+....... ...++|.|+++++++|+| +++++++.|+.|||+++|++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~ 422 (576)
T 3gqw_A 344 LAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHICISGPSLM 422 (576)
T ss_dssp SEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEEEEESTTSC
T ss_pred ceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEEEEeCcccc
Confidence 87765532210 113799999999999999 7899999999999999999999
Q ss_pred cccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceE
Q 012261 307 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 386 (467)
Q Consensus 307 ~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~ 386 (467)
.|||++++.+...+ .+|||+|||+|++ + ||.+++.||+||+||+ +|++|+|.|||++|.+||+|.++
T Consensus 423 ~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~ 489 (576)
T 3gqw_A 423 SGYFGDQVSQDEIA-ATGWLDTGDLGYL-L----------DGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSG 489 (576)
T ss_dssp CCBTTCHHHHHHHH-HHSCEEEEEEEEE-E----------TTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTT
T ss_pred ccccCCcccccccc-CCCeeeccceEEE-E----------CCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccc
Confidence 99999998887655 6899999999999 6 8999999999999998 99999999999999999999988
Q ss_pred EEEeeCC--CceEEEEecChHHHHHHHHHccccccCcccCCHHHHHHHHHHHH-HHHhhcCCCccccEEEeC--CCCCCC
Q 012261 387 VVIGQDQ--RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGEL-RKWTSKCSFQIGPIHVVD--EPFTVN 461 (467)
Q Consensus 387 ~Vvg~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~~~~~~i~~i~~~~--~~~~~~ 461 (467)
+|++..+ ....++++...+ .+...+++++.+++++ +.+ ..+..|.+++ +.|.+.
T Consensus 490 ~vv~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~~p~~i~~v~~~~lP~t~ 548 (576)
T 3gqw_A 490 DAIAFVTAQEKIILQIQCRIS----------------DEERRGQLIHALAARIQSEF-----GVTAAIDLLPPHSIPRTS 548 (576)
T ss_dssp SEEEEECTTSCEEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHH-----SCCEEEEEECSSCSCBCT
T ss_pred cEEEEEcCCccEEEEEEEecC----------------chhHHHHHHHHHHHHHHHHh-----CCceeEEEECCCCcCcCC
Confidence 8777643 445555554321 1223567888888888 456 4667888887 899999
Q ss_pred CCccC
Q 012261 462 FLCLA 466 (467)
Q Consensus 462 ~g~~~ 466 (467)
+||+.
T Consensus 549 ~GKi~ 553 (576)
T 3gqw_A 549 SGKPA 553 (576)
T ss_dssp TSSBC
T ss_pred Cccch
Confidence 99985
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2e-46 Score=402.07 Aligned_cols=330 Identities=15% Similarity=0.089 Sum_probs=190.3
Q ss_pred CceEEEeeeCCCCCCcceehhhhh-----Hhhh--------cccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQI-----RSLY--------DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT 103 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~~-----~~~~--------~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~ 103 (467)
.+++|+|||||||.||||+++|+. ..+. ..+.+...++++++.|++|.++....+.++..|+++++.
T Consensus 176 ~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 255 (562)
T 3ite_A 176 LDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTG 255 (562)
T ss_dssp SEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEec
Confidence 347999999999999999999981 1111 124577889999999999998887778889999999986
Q ss_pred C----HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCch
Q 012261 104 A----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 179 (467)
Q Consensus 104 ~----~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (467)
+ +..+++.++++++|++.++|+++..+...
T Consensus 256 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~---------------------------------------------- 289 (562)
T 3ite_A 256 ERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV---------------------------------------------- 289 (562)
T ss_dssp CHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------------------------------------
T ss_pred chhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------------------------------------
Confidence 3 46678899999999999999987654220
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeecccccccccccc
Q 012261 180 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIA 258 (467)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~ 258 (467)
..+++++|.+++||+++++++.+.++ .+++++++.||+||++..++
T Consensus 290 ---------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 336 (562)
T 3ite_A 290 ---------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCS 336 (562)
T ss_dssp ---------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSE
T ss_pred ---------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeee
Confidence 03556779999999999999966555 45899999999999987665
Q ss_pred ccCC-CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCC--eeecccEEEEc
Q 012261 259 ARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGDIGWIA 335 (467)
Q Consensus 259 ~~~~-~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~g--w~~TGD~~~~~ 335 (467)
.... .....+++|.|+++++++++|++++++++.|+.|||+++|++++.|||++|+.+...+ .+| ||+|||+|+++
T Consensus 337 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d 415 (562)
T 3ite_A 337 AGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMD 415 (562)
T ss_dssp EEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEEC
T ss_pred eeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEc
Confidence 5443 3346789999999999999998899999999999999999999999999999988765 355 99999999999
Q ss_pred CCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcC-cCcceEEEEeeCCCce----EEEEecChH-HHHH
Q 012261 336 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRRP----GAIIVPDKE-EVLM 409 (467)
Q Consensus 336 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~-p~V~~~~Vvg~~~~~~----~a~vv~~~~-~~~~ 409 (467)
+ ||.++|.||+||+||+ +|++|+|.|||++|.++ |.+.+++|++.+++.. .+.++...+ ....
T Consensus 416 ~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~ 484 (562)
T 3ite_A 416 A----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG 484 (562)
T ss_dssp T----------TSCEEEEEEC-----------------------------------------------------------
T ss_pred C----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc
Confidence 9 9999999999999997 99999999999999998 8888999998766532 233333222 1110
Q ss_pred HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCC-CCCccC
Q 012261 410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCLA 466 (467)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~-~~g~~~ 466 (467)
... . .........++++++++++|+.| ..|+.|.++++.|.+ .+||+.
T Consensus 485 ~~~---~-~~~~~~~~~~~l~~~~~~~L~~y-----~~P~~i~~v~~lP~t~~~GKi~ 533 (562)
T 3ite_A 485 ELR---W-INENYKEINNSLRQACEQTLPAY-----MVPDFIIPISFIPLRDTSAKTD 533 (562)
T ss_dssp ----------------------------------------------------------
T ss_pred ccc---c-cccchhhHHHHHHHHHHhhCCcc-----cCCcEEEEeccCCCCCCCCcch
Confidence 000 0 00111223458999999999999 688899999999966 899985
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.9e-45 Score=426.26 Aligned_cols=317 Identities=19% Similarity=0.213 Sum_probs=272.0
Q ss_pred CceEEEeeeCCCCCCcceehhhh-hH---hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec------CHH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQ-IR---SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AVR 106 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~-~~---~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~------~~~ 106 (467)
.+++|+|||||||.||||+++|+ +. .....++++++|+++.+.|++|..+....+.++..|+++++. ++.
T Consensus 608 ~~ayiiyTSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~ 687 (1304)
T 2vsq_A 608 DPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTE 687 (1304)
T ss_dssp SEEEEEEECCSSSSCEEEEEEHHHHHHHHSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHH
T ss_pred CeEEEEeCCCCCCCCCEEEEehHHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHH
Confidence 45699999999999999999998 22 223446788999999999999999887778889999999995 477
Q ss_pred HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHH
Q 012261 107 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 186 (467)
Q Consensus 107 ~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (467)
.+++.++++++|++.++|+++..+.+.. .
T Consensus 688 ~l~~~i~~~~vt~~~~~p~~~~~l~~~~-------~-------------------------------------------- 716 (1304)
T 2vsq_A 688 RLTDLILQENVNVMFATTALFNLLTDAG-------E-------------------------------------------- 716 (1304)
T ss_dssp HHHHHHHHHTCCEEEEEHHHHHHHHHHC-------S--------------------------------------------
T ss_pred HHHHHHHHcCCcEEEccHHHHHHHHhhc-------h--------------------------------------------
Confidence 8999999999999999999998886520 0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHh-CCceeeccccccccccccccCC--
Q 012261 187 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP-- 262 (467)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-- 262 (467)
..++++|.+++||++++.++ .++.+.+ +.++++.||+||++..++....
T Consensus 717 ---------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~ 769 (1304)
T 2vsq_A 717 ---------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHD 769 (1304)
T ss_dssp ---------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCC
T ss_pred ---------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccC
Confidence 12234599999999999887 6666666 4789999999999876665432
Q ss_pred --CCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCC------CCeeecccEEEE
Q 012261 263 --TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDIGWI 334 (467)
Q Consensus 263 --~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~------~gw~~TGD~~~~ 334 (467)
......++|.|+++++++|+| +.++++|.|+.|||+|+|+++++||+++|+.|..+|.. ++||+|||+|++
T Consensus 770 ~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~ 848 (1304)
T 2vsq_A 770 LPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARW 848 (1304)
T ss_dssp CCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEE
T ss_pred ccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEE
Confidence 223457899999999999999 66899999999999999999999999999999988842 459999999999
Q ss_pred cCCCCCCCccccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHH
Q 012261 335 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMA 410 (467)
Q Consensus 335 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~ 410 (467)
++ ||.++++||+||+||+ +|++|+|.|||.+|.+||+|.+++|++.++ ..++|+|+.+
T Consensus 849 ~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~------- 910 (1304)
T 2vsq_A 849 LP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR------- 910 (1304)
T ss_dssp CT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS-------
T ss_pred cC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC-------
Confidence 99 9999999999999998 999999999999999999999999999754 4677888875
Q ss_pred HHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 411 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
...+.+++++++++.|+.| ..|+.|.++++.|.+.|||++
T Consensus 911 -----------~~~~~~~l~~~l~~~Lp~y-----mvP~~~~~l~~lP~t~~GKid 950 (1304)
T 2vsq_A 911 -----------TQLSAEDVKAHLKKQLPAY-----MVPQTFTFLDELPLTTNGKVN 950 (1304)
T ss_dssp -----------SSSCHHHHHHHHHHHSCGG-----GSCSEEEEESCCCCCSSCSSC
T ss_pred -----------CCCCHHHHHHHHHHhChHh-----hhccEEEEecccCCCCCcccC
Confidence 2356788999999999999 578899999999999999985
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.3e-46 Score=378.00 Aligned_cols=293 Identities=13% Similarity=0.073 Sum_probs=244.8
Q ss_pred CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec-CHHHHHH
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-AVRNLKD 110 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~-~~~~l~~ 110 (467)
.|++|+|||||||.||||++||+ +......++++++|++++++|++|++++...+.++..|+++++. +..++++
T Consensus 38 ~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~~~ 117 (358)
T 4gs5_A 38 AREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANPLA 117 (358)
T ss_dssp CSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCTTT
T ss_pred CCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccHHH
Confidence 57899999999999999999998 34555678999999999999999999998888889999998885 3455678
Q ss_pred HHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHHHHHHH
Q 012261 111 DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWA 190 (467)
Q Consensus 111 ~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (467)
.++++++|++.++|+++..+.+....
T Consensus 118 ~i~~~~~t~~~~~P~~l~~ll~~~~~------------------------------------------------------ 143 (358)
T 4gs5_A 118 GLDHADFDFVAMVPMQLQSILENSAT------------------------------------------------------ 143 (358)
T ss_dssp TCSSCCCSEEEECHHHHHHHHHCTTT------------------------------------------------------
T ss_pred HHHHhCCeEEEcChHHHHHhhccccc------------------------------------------------------
Confidence 89999999999999999988762110
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHHHhCCceeeccccccccccccccCCCCCCCCcc
Q 012261 191 RIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV 270 (467)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~g~v 270 (467)
...++++|.+++||+++++++.+.++.+++++++.||+||+++..+..+......+.+
T Consensus 144 ----------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~ 201 (358)
T 4gs5_A 144 ----------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEASEL 201 (358)
T ss_dssp ----------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCCSC
T ss_pred ----------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeeccccccccccee
Confidence 1345566999999999999998878888999999999999998888877777778999
Q ss_pred cccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceE
Q 012261 271 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 350 (467)
Q Consensus 271 G~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l 350 (467)
|.+.|++++.+.+ .|||+++|+. ..+|||+|||+|++++ || +
T Consensus 202 ~~~~pgv~~~~~~-----------~Gel~~~g~~----------------~~~g~~~TGDlg~~d~----------~g-~ 243 (358)
T 4gs5_A 202 YVFLPGIQYGVDE-----------RGCLHISGAV----------------TNGQTVQTNDLVEIHG----------NA-F 243 (358)
T ss_dssp EEECTTCEEEECT-----------TSEEEEESGG----------------GTTCCEEEEEEEEECS----------SE-E
T ss_pred eccCCCeEEEecC-----------cCceEEeccc----------------ccCcceecCCcccccc----------Cc-e
Confidence 9999999888743 6999998752 1578999999999998 78 6
Q ss_pred EEEccCCCeeeeCCceeeccHHHHHHHH---cCcCcceEEEE-eeCCCc----eEEEEecChHHHHHHHHHccccccCcc
Q 012261 351 VLEGRAKDTIVLSTGENVEPLELEEAAL---RSSLIRQIVVI-GQDQRR----PGAIIVPDKEEVLMAAKRLSIVHADAS 422 (467)
Q Consensus 351 ~i~GR~~d~i~~~~G~~v~p~eIE~~l~---~~p~V~~~~Vv-g~~~~~----~~a~vv~~~~~~~~~~~~~~~~~~~~~ 422 (467)
.++||+||+||+ +|++|+|.|||+.|. +||.|.+++|+ +.+++. +.++|+.+..
T Consensus 244 ~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~----------------- 305 (358)
T 4gs5_A 244 QWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP----------------- 305 (358)
T ss_dssp EEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-----------------
T ss_pred EEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-----------------
Confidence 667999999996 999999999998874 68999999887 555543 4566655432
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCccccEEEeCCCCCCCCCccC
Q 012261 423 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 466 (467)
Q Consensus 423 ~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~~~g~~~ 466 (467)
+...++++++++++|+.| ++|++|.++++.|.+.+||+.
T Consensus 306 ~~~~~~l~~~l~~~L~~~-----~~P~~i~~v~~lP~t~~GKi~ 344 (358)
T 4gs5_A 306 EALTERLTAEIRSRVSTY-----ENPKHIYFAKAFAKTQTDKID 344 (358)
T ss_dssp HHHHHHHHHHHHHHSCGG-----GSCSCEEEESSCCBCTTSCBC
T ss_pred CcCHHHHHHHHHhhCCCC-----CCceEEEEECCcCCCCCCChh
Confidence 234567899999999888 688899999999999999985
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.6e-42 Score=360.51 Aligned_cols=320 Identities=14% Similarity=0.074 Sum_probs=243.3
Q ss_pred ceEEEeeeCCCCCCcceehhhhh-----Hhh---hcccCCCCCCEEEEECChhHHHHHHH-hHHHhhcCceEEec---CH
Q 012261 38 LFSFVLIDLNTWMPIPKMTNFQI-----RSL---YDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---AV 105 (467)
Q Consensus 38 ~~~i~~TSGTTG~PK~v~~t~~~-----~~~---~~~~~~~~~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~---~~ 105 (467)
++.|+|||||||.||+|+++|.. ... ...+++.++|++++++|++|..+... .+.++..|+++++. ++
T Consensus 88 ~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~ 167 (436)
T 3qov_A 88 GVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNS 167 (436)
T ss_dssp EEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCH
T ss_pred eEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCH
Confidence 36899999999999999999981 111 23458899999999999976666554 45669999999885 58
Q ss_pred HHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHHH
Q 012261 106 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 185 (467)
Q Consensus 106 ~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (467)
..+++.+++++||++.++|+++..|.+.......
T Consensus 168 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------------------------------- 201 (436)
T 3qov_A 168 KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI---------------------------------------------- 201 (436)
T ss_dssp HHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred HHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC----------------------------------------------
Confidence 8999999999999999999999999875433210
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHHH-HhCCceeeccccccccccccccCCCC
Q 012261 186 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTC 264 (467)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~~~~~~~~ 264 (467)
...++++|.+++||+++++++.+.++ .+|+++++.||+||+++..+.....
T Consensus 202 ---------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~- 253 (436)
T 3qov_A 202 ---------------------------DPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ- 253 (436)
T ss_dssp ---------------------------CTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT-
T ss_pred ---------------------------CcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC-
Confidence 01245679999999999999965554 6699999999999995442222111
Q ss_pred CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCC-CCCc
Q 012261 265 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS-RGRS 343 (467)
Q Consensus 265 ~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~-~~~~ 343 (467)
....+|.|.++++++++|+++++++++|+.|||+++|. +...+ .++||+|||+|+++++.| ||+.
T Consensus 254 -~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~ 319 (436)
T 3qov_A 254 -EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRT 319 (436)
T ss_dssp -TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCC
T ss_pred -CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCC
Confidence 11336778889999999999999999999999999983 22334 578999999999998655 4432
Q ss_pred cccCceEEEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHHHHHcccccc
Q 012261 344 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHA 419 (467)
Q Consensus 344 ~~~~G~l~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~ 419 (467)
.+ ..+++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.++ +.+.++|+++ +. .
T Consensus 320 ~~--~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~------------~ 383 (436)
T 3qov_A 320 HL--RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL------------S 383 (436)
T ss_dssp SC--EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT------------C
T ss_pred cc--ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc------------c
Confidence 10 025999999999998 999999999999999999999999998764 4677888887 41 0
Q ss_pred CcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEeC--CCCCCCCCccC
Q 012261 420 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA 466 (467)
Q Consensus 420 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~~--~~~~~~~g~~~ 466 (467)
.....+.+++.+.+++.|+++. ..+..|.+++ +.|.+. ||+.
T Consensus 384 ~~~~~~~~~l~~~l~~~l~~~~----~~p~~i~~v~~~~lP~t~-GKi~ 427 (436)
T 3qov_A 384 TDNYIELEKIRRDIIRQLKDEI----LVTPKVKLVKKGSLPQSE-GKAV 427 (436)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH----SSCCEEEEECTTCCC--------
T ss_pred ccchhhHHHHHHHHHHHHHHhc----CCceEEEEeCCCcccCcC-Ccce
Confidence 0011125789999999999985 2445889998 899988 9874
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=7.4e-42 Score=356.17 Aligned_cols=313 Identities=17% Similarity=0.117 Sum_probs=246.3
Q ss_pred CceEEEeeeCCCCCCcceehhhhhH-----h---hhcccCCCCCCEEEEECCh-hHHHHHHHhHHHhhcCceEEec---C
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQIR-----S---LYDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMYT---A 104 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~~~-----~---~~~~~~~~~~d~~l~~lPl-~h~~g~~~~~~~l~~G~~~v~~---~ 104 (467)
.++.|+|||||||.||+|+++|+.. . ....++++++|++++.+|+ +|..++...+.++..|+++++. +
T Consensus 93 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 172 (443)
T 2y4o_A 93 QVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGGQ 172 (443)
T ss_dssp GCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSCC
T ss_pred heEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCCC
Confidence 3458999999999999999999721 1 1225788999999999998 5777776667779999999885 6
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.+++++||++.++|+++..|.+...+....
T Consensus 173 ~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------------------------------- 208 (443)
T 2y4o_A 173 TEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD-------------------------------------------- 208 (443)
T ss_dssp HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------------------------------
T ss_pred HHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC--------------------------------------------
Confidence 899999999999999999999999998753321100
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccc--cccccC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSP--VIAARR 261 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~--~~~~~~ 261 (467)
..++++|.+++||+++++++.+.+ +.+|+++++.||+||+++ +...+.
T Consensus 209 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~ 259 (443)
T 2y4o_A 209 -----------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECV 259 (443)
T ss_dssp -----------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECT
T ss_pred -----------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccC
Confidence 123566999999999999996555 467999999999999743 333332
Q ss_pred CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261 262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341 (467)
Q Consensus 262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~ 341 (467)
.. ...++.|.+++.++++|+++++++++|+.|||+++|. +...+ .++||+|||+|++++
T Consensus 260 ~~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~----- 318 (443)
T 2y4o_A 260 ET---KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PVIRYRTRDLTALLP----- 318 (443)
T ss_dssp TT---CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCSSEEEEEEECEEC-----
T ss_pred CC---CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hhheeecCCEEEEcC-----
Confidence 21 1125667789999999988899999999999999973 22334 578999999999998
Q ss_pred CccccC-ceE-----EEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecCh--HHHHH
Q 012261 342 RSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDK--EEVLM 409 (467)
Q Consensus 342 ~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~--~~~~~ 409 (467)
+ |.+ ++.||+||+|++ +|++|+|.|||++|.+||+|.+++|++.++ +.+.++|++++ +.
T Consensus 319 -----~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~--- 389 (443)
T 2y4o_A 319 -----PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA--- 389 (443)
T ss_dssp -----CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT---
T ss_pred -----CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc---
Confidence 5 765 899999999997 899999999999999999999999888533 45778888875 20
Q ss_pred HHHHccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEe--CCCCCCCCCccC
Q 012261 410 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFLCLA 466 (467)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~--~~~~~~~~g~~~ 466 (467)
.....+.+++.++++++|+.+. ..+..|.++ ++.|.+.+||+.
T Consensus 390 ----------~~~~~~~~~l~~~l~~~l~~~~----~~p~~v~~v~~~~lP~t~~GKi~ 434 (443)
T 2y4o_A 390 ----------SVTDGERAALARELQHRIKTMV----GVSSGVTVLAAGGIPATATGKAR 434 (443)
T ss_dssp ----------TCCHHHHHHHHHHHHHHHHHHT----CCCCEEEEECTTCSCCCTTSCCC
T ss_pred ----------cchhhHHHHHHHHHHHHHHHHh----CCceEEEEeCCCcccCccCCcce
Confidence 0012345688999999998873 244578888 499999999974
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=7.2e-42 Score=355.66 Aligned_cols=313 Identities=18% Similarity=0.129 Sum_probs=245.6
Q ss_pred CceEEEeeeCCCCCCcceehhhhhH--------hhhcccCCCCCCEEEEECCh-hHHHHHHHhHHHhhcCceEEec---C
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQIR--------SLYDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMYT---A 104 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~~~--------~~~~~~~~~~~d~~l~~lPl-~h~~g~~~~~~~l~~G~~~v~~---~ 104 (467)
.++.|+|||||||.||+|+++|... .....++++++|++++.+|+ +|..++...+.++..|++++.. +
T Consensus 91 ~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 170 (437)
T 2y27_A 91 RISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQ 170 (437)
T ss_dssp GCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSCC
T ss_pred HeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCCC
Confidence 3458999999999999999999821 11235788999999999998 6888777777789999999874 6
Q ss_pred HHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCCchhHHHH
Q 012261 105 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL 184 (467)
Q Consensus 105 ~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (467)
+..+++.+++++||++.++|+++..|.+..++.. .+
T Consensus 171 ~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~------------------------------~~-------------- 206 (437)
T 2y27_A 171 TEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG------------------------------LD-------------- 206 (437)
T ss_dssp HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT------------------------------CC--------------
T ss_pred HHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC------------------------------CC--------------
Confidence 8899999999999999999999999987543311 00
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHHHH-HHhCCceeeccccccccc--cccccC
Q 012261 185 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSP--VIAARR 261 (467)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~--~~~~~~ 261 (467)
..++++|.+++||+++++++.+.+ +.+|+++++.||+||+++ +...++
T Consensus 207 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~ 257 (437)
T 2y27_A 207 -----------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECV 257 (437)
T ss_dssp -----------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCT
T ss_pred -----------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecC
Confidence 123566999999999999996655 467999999999999843 233232
Q ss_pred CCCCCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCC
Q 012261 262 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 341 (467)
Q Consensus 262 ~~~~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~ 341 (467)
.. ...++.|.+++.++++|+++++++|+|+.|||+++|. +...+ .++||+|||+|+++++
T Consensus 258 ~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~---- 317 (437)
T 2y27_A 258 ET---KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPG---- 317 (437)
T ss_dssp TT---CSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEEEEEEECEECC----
T ss_pred CC---CCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheeecCCEEEEeCC----
Confidence 21 1126677899999999988899999999999999972 23334 5789999999999972
Q ss_pred CccccCceE-----EEEccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeC----CCceEEEEecChHHHHHHHH
Q 012261 342 RSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPDKEEVLMAAK 412 (467)
Q Consensus 342 ~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~----~~~~~a~vv~~~~~~~~~~~ 412 (467)
+|.+ ++.||+||+|++ +|++|+|.+||++|.+||+|.+++|++.+ .+.+.++|+++++.
T Consensus 318 -----~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~------ 385 (437)
T 2y27_A 318 -----TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET------ 385 (437)
T ss_dssp -----SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTT------
T ss_pred -----CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCc------
Confidence 2764 899999999997 99999999999999999999999988853 34677888887531
Q ss_pred HccccccCcccCCHHHHHHHHHHHHHHHhhcCCCccccEEEe--CCCCCCCCCccC
Q 012261 413 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFLCLA 466 (467)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~i~~~--~~~~~~~~g~~~ 466 (467)
.....+.+++.++++++|+++. ..+..|.++ ++.|.+. ||+.
T Consensus 386 -------~~~~~~~~~l~~~l~~~l~~~~----~~p~~v~~v~~~~lP~t~-GKi~ 429 (437)
T 2y27_A 386 -------APDTAAIQVAKQALAYDIKSLI----GVTAVINVLPVNGIERSV-GKAR 429 (437)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCSCCCS-SSCC
T ss_pred -------cchhhhHHHHHHHHHHHHHHhc----CCceEEEEeCCCCccCCC-Ccce
Confidence 0011345789999999998874 234578888 4888888 9974
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.7e-37 Score=325.54 Aligned_cols=235 Identities=20% Similarity=0.265 Sum_probs=186.0
Q ss_pred CceEEEeeeCCCCCCcceehhhh-----hHhhhcccCCCC------CCEEEEECChhHHHHHHH-hHHHhhcCceEEec-
Q 012261 37 PLFSFVLIDLNTWMPIPKMTNFQ-----IRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 103 (467)
Q Consensus 37 ~~~~i~~TSGTTG~PK~v~~t~~-----~~~~~~~~~~~~------~d~~l~~lPl~h~~g~~~-~~~~l~~G~~~v~~- 103 (467)
.+++|+|||||||.||||+++|+ +......+++.+ +|++++++|++|++++.. .+.++..|+++++.
T Consensus 184 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~ 263 (480)
T 3t5a_A 184 STAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTS 263 (480)
T ss_dssp SEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECC
T ss_pred ceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEEC
Confidence 45699999999999999999998 223344456666 899999999999999875 46679999999985
Q ss_pred ------CHHHHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhhhcCcccccCCCC
Q 012261 104 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 177 (467)
Q Consensus 104 ------~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (467)
++..+++.++++++| +..+|+++..+....... +..
T Consensus 264 ~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~----~~~--------------------------------- 305 (480)
T 3t5a_A 264 PVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD----DDM--------------------------------- 305 (480)
T ss_dssp HHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----GGG---------------------------------
T ss_pred HHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----ccc---------------------------------
Confidence 567889999999999 889999988876531100 000
Q ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHH-HHHHHHhC------Cceeecccc
Q 012261 178 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------VKVQVGYGL 250 (467)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~-~~~~~~~g------~~v~~~YG~ 250 (467)
...+++++|.+++||+++++++ .++.+.++ +.+++.||+
T Consensus 306 ----------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 306 ----------------------------------AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ----------------------------------TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ----------------------------------cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 0145677899999999999998 55555663 479999999
Q ss_pred ccccccccccCCCC-------------------------CCCCcccccCCCeEEEEEeCCCCcccCCCCceEEEEeCCCc
Q 012261 251 TESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 305 (467)
Q Consensus 251 TE~~~~~~~~~~~~-------------------------~~~g~vG~p~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~ 305 (467)
||++...+...... ...+++|.|++ ++++|+|++++++++.|+.|||+|+|+++
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v 430 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNV 430 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTS
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCcc
Confidence 99998776654321 23468999999 99999998889999999999999999999
Q ss_pred CcccCCCccccccccC-----------CCCeeecccEEEEcCCCCCCCccccCceEEEEcc
Q 012261 306 MQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 355 (467)
Q Consensus 306 ~~gY~~~~~~t~~~~~-----------~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR 355 (467)
+.|||++|+.|.++|. ++|||+|||+|+++ ||.|+|+||
T Consensus 431 ~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR 480 (480)
T 3t5a_A 431 ANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480 (480)
T ss_dssp CCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred ccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence 9999999999999985 57799999999994 799999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=8.2e-28 Score=244.21 Aligned_cols=233 Identities=16% Similarity=0.086 Sum_probs=163.2
Q ss_pred ceEEEeeeCCCCCCcceehhhh-h----H---hhhcccCCCCCCEEEEECCh-hHHHHHHHhHHHhhcCceEEec--CHH
Q 012261 38 LFSFVLIDLNTWMPIPKMTNFQ-I----R---SLYDIVPAENGDKFLSMLPP-WHVYERACGYFIFSRGIELMYT--AVR 106 (467)
Q Consensus 38 ~~~i~~TSGTTG~PK~v~~t~~-~----~---~~~~~~~~~~~d~~l~~lPl-~h~~g~~~~~~~l~~G~~~v~~--~~~ 106 (467)
++.|+|||||||.||+|+++|+ . . .....++++++|++++.+|+ +|++++...+.++..|+.++.. ++.
T Consensus 93 ~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~~dp~ 172 (369)
T 3hgu_A 93 HPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPR 172 (369)
T ss_dssp CCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCCCCHH
T ss_pred cEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECccCChH
Confidence 3689999999999999999998 1 1 23345678899999999999 9999998888889999954442 455
Q ss_pred -----------------------HHHHHHhhcCCcEeecchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhh
Q 012261 107 -----------------------NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFK 163 (467)
Q Consensus 107 -----------------------~l~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (467)
.+++.++++++|++.++|+++..|++.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~-------------------------- 226 (369)
T 3hgu_A 173 WVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV-------------------------- 226 (369)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH--------------------------
T ss_pred HHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh--------------------------
Confidence 7777999999999999999999987631100
Q ss_pred hhhcCcccccCCCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCceEEEEecCCchHHHHH-HH-HHh-
Q 012261 164 RIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FY-EAI- 240 (467)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~-~~-~~~- 240 (467)
...++++|.+++||+++++++.+ +. +.+
T Consensus 227 -------------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p 257 (369)
T 3hgu_A 227 -------------------------------------------------LQMKQSLAQITLGGTELNLDEIKFIASEILP 257 (369)
T ss_dssp -------------------------------------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCT
T ss_pred -------------------------------------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCC
Confidence 02233459999999999999955 45 456
Q ss_pred CCceeeccccccccccccccCCCCCCCCccccc------CCCeEEEEEeCCCCcccCCCCceEEEEeCCCcCcccCCCcc
Q 012261 241 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 314 (467)
Q Consensus 241 g~~v~~~YG~TE~~~~~~~~~~~~~~~g~vG~p------~~~~~v~i~d~~~~~~~~~g~~GEL~v~~~~~~~gY~~~~~ 314 (467)
++++++.||+||+++++..++. .++|.| .++++++|+|+++++++|+|+.|||++++.+-
T Consensus 258 ~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~--------- 323 (369)
T 3hgu_A 258 DCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSP--------- 323 (369)
T ss_dssp TSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEET---------
T ss_pred CcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCc---------
Confidence 8999999999999876644432 147888 99999999998799999999999999987321
Q ss_pred ccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCce
Q 012261 315 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 366 (467)
Q Consensus 315 ~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~ 366 (467)
..+ --.|+|||++...+... |...+....+..++|.++..++ .|.
T Consensus 324 ---~~~--l~ry~tgD~~~~~~~~~-g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 324 ---WAF--YPRVAERDTAIRLPGVS-GFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp ---TEE--EEEEEEEEEEEEECCST-TCSSCEEEEEEECC------------
T ss_pred ---ccc--cccccCCceEEEecCCC-CCcCcccccceeccccCCCcee-eec
Confidence 111 11389999998876322 1111112235556776766665 453
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.98 E-value=1.3e-09 Score=90.83 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=63.9
Q ss_pred ccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCCC----ceEEEEecChHHHHHHHHHccccccCcccCCHHHH
Q 012261 354 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 429 (467)
Q Consensus 354 GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l 429 (467)
.|+||||++ +|.||+|.|||++|.+||+|.++++++.+++ .+.++|++.+.. .......+++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-------------~~~~~~~~~l 66 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-------------TDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-------------CCCHHHHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-------------ccccchhhhh
Confidence 499999997 9999999999999999999999999997654 355667765431 0011123456
Q ss_pred HHHHHHHHHHHhhcCCCccccEEEeC--CCCCCCCCcc
Q 012261 430 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 465 (467)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~i~~i~~~~--~~~~~~~g~~ 465 (467)
.+.+++.++.+..- ...+.+++ +.|++ +||+
T Consensus 67 ~~~i~~~l~~~~gv----~~~v~~v~~~~lPrt-sGKi 99 (109)
T 3lax_A 67 TREITRQLKDEILV----TPRVKLVPKGALPKS-EGKA 99 (109)
T ss_dssp HHHHHHHHHHHHSS----CCEEEEECTTCSCCC----C
T ss_pred HHHHHHHHHHHhCC----ccceEEEcCCeecCC-CCCc
Confidence 67777777665421 23577775 67777 6986
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.89 E-value=2.6e-08 Score=106.15 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=90.6
Q ss_pred eEEEEecCCchHHHHHHHHHh-CCcee-eccccccccccccccCCCCCCCCcccc--cCCCeEEEEEeCCCC--------
Q 012261 220 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH--PINHTEIKIVDAETN-------- 287 (467)
Q Consensus 220 r~i~~gG~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~g~vG~--p~~~~~v~i~d~~~~-------- 287 (467)
.++++|| +.+-...+...+ +.+++ ..|++||.....-.. + ...++..+. .....-++.++.+..
T Consensus 308 ~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~-p-~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~ 383 (609)
T 4b2g_A 308 DVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECYFGLNLN-P-MSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS 383 (609)
T ss_dssp EEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCEEEECSC-T-TSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSS
T ss_pred EEEccCC--hHHHHHHHHHHcCCCccccCcccccceeeeeecC-C-CCCcccCceeecCCcEEEEEEeccccccccccCC
Confidence 3444444 444433333333 67777 999999974322221 1 111122221 112355667753321
Q ss_pred -------cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCee
Q 012261 288 -------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 360 (467)
Q Consensus 288 -------~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i 360 (467)
.++..|+.+||+++..+ |+|. |++||+++++.-+. . ...+.|.||.++++
T Consensus 384 ~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~-----~-~p~i~~~gR~~~~l 440 (609)
T 4b2g_A 384 PPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHN-----S-APQFHFVRRKNVLL 440 (609)
T ss_dssp CCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEET-----T-EEEEEEEEETTCCB
T ss_pred CCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCC-----C-CcEEEEEEecCCeE
Confidence 46778999999998643 4443 99999998873100 0 35899999999999
Q ss_pred eeCCceeeccHHHHHHHHcC------c--CcceEEEEeeC
Q 012261 361 VLSTGENVEPLELEEAALRS------S--LIRQIVVIGQD 392 (467)
Q Consensus 361 ~~~~G~~v~p~eIE~~l~~~------p--~V~~~~Vvg~~ 392 (467)
++ .|++|++.+||+++.+. . .|.|..++...
T Consensus 441 ~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~ 479 (609)
T 4b2g_A 441 SI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADT 479 (609)
T ss_dssp CS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEEC
T ss_pred Ec-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCC
Confidence 97 89999999999998732 2 35677666543
No 39
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.89 E-value=4.9e-09 Score=87.33 Aligned_cols=94 Identities=13% Similarity=0.035 Sum_probs=66.4
Q ss_pred ccCCCeeeeCCceeeccHHHHHHHHcCcCcceEEEEeeCC----CceEEEEecChHHHHHHHHHccccccCcccCCHHHH
Q 012261 354 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 429 (467)
Q Consensus 354 GR~~d~i~~~~G~~v~p~eIE~~l~~~p~V~~~~Vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l 429 (467)
||.||+|++ +|.||+|.|||++|.+||+|.++++++.++ +.+.++|++ ++. ......+.+++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~------------~~~~~~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL------------FTDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT------------CCCCHHHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc------------cccchhHHHHH
Confidence 799999997 999999999999999999999888887644 346677776 331 00001234678
Q ss_pred HHHHHHHHHHHhhcCCCccccEEEeC--CCCCCCCCccC
Q 012261 430 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCLA 466 (467)
Q Consensus 430 ~~~~~~~l~~~~~~~~~~i~~i~~~~--~~~~~~~g~~~ 466 (467)
.+.+++.+...... . ..|.+++ +.|.+ +||+.
T Consensus 67 ~~~i~~~l~~~~~~---~-~~v~~v~~~~lPrt-sGKi~ 100 (109)
T 3gxs_A 67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKAV 100 (109)
T ss_dssp HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----CC
T ss_pred HHHHHHHHHHhhCC---c-eEEEEECCCCccCC-CCceE
Confidence 88888888754322 2 2788888 88988 99873
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.88 E-value=3e-07 Score=97.59 Aligned_cols=151 Identities=12% Similarity=0.066 Sum_probs=92.2
Q ss_pred cCCceE--EEEecCCchHHHHHHHHHh-CCcee-eccccccccccccccCCCCCCCCcccc-cC-CCeEEEEEeCCC---
Q 012261 216 IGISKA--GVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PI-NHTEIKIVDAET--- 286 (467)
Q Consensus 216 l~~lr~--i~~gG~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~g~vG~-p~-~~~~v~i~d~~~--- 286 (467)
-+++++ ++.+| .+.+-...+...+ +++++ ..|++||.... . +......++..+. .. ...-++.++.+.
T Consensus 301 WPnl~~i~~~~~G-~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i-~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~ 377 (581)
T 4epl_A 301 FPNAKYVYGIMTG-SMEPYVPKLRHYAGDLPLVSHDYGSSEGWIA-A-NVTPRLSPEEATFAVIPNLGYFEFLPVSETGE 377 (581)
T ss_dssp CTTCCCEEEECSG-GGGGGHHHHHHHHTTSCEEECCEEETTEEEE-E-CCCTTSCTTTCCEEECTTSCEEEEEEC-----
T ss_pred CCCCceEEEEeCC-ChHHHHHHHHHHcCCCccccCceeccceeee-e-ecCCCCCccccceeecCCcEEEEEEecccccC
Confidence 355542 33333 4444433333333 67777 99999996422 2 2211122222222 11 224455654221
Q ss_pred -------CcccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCe
Q 012261 287 -------NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 359 (467)
Q Consensus 287 -------~~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~ 359 (467)
-..+..|+.+||+++..+ |.|. |++||++++...+. . ...+.|.||.+++
T Consensus 378 ~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~-----~-~p~~~~~gR~~~~ 434 (581)
T 4epl_A 378 GEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYN-----N-TPQLKFICRRNLI 434 (581)
T ss_dssp --CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEET-----T-EEEEEEEEETTCC
T ss_pred CCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccC-----C-CcEEEEEeecCCe
Confidence 157788999999998753 3332 99999998875211 0 2479999999999
Q ss_pred eeeCCceeeccHHHHHHHHcC------c--CcceEEEEeeCC
Q 012261 360 IVLSTGENVEPLELEEAALRS------S--LIRQIVVIGQDQ 393 (467)
Q Consensus 360 i~~~~G~~v~p~eIE~~l~~~------p--~V~~~~Vvg~~~ 393 (467)
+++ .|+++++.+||+++.+. . .|.|..++.+..
T Consensus 435 l~~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~ 475 (581)
T 4epl_A 435 LSI-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS 475 (581)
T ss_dssp BCS-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS
T ss_pred EEe-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC
Confidence 997 89999999999998742 2 366777776543
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.87 E-value=9.5e-08 Score=101.56 Aligned_cols=145 Identities=12% Similarity=0.136 Sum_probs=86.9
Q ss_pred eEEEEecCCchHHHHHHHHHh-CCcee-eccccccccccccccCCCCCCCCcccc-cC-CCeEEEEEeCCC--------C
Q 012261 220 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PI-NHTEIKIVDAET--------N 287 (467)
Q Consensus 220 r~i~~gG~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~g~vG~-p~-~~~~v~i~d~~~--------~ 287 (467)
.++++|| +.+-...+...+ +.+++ ..|++||... . .+......+...+. .. ...-++.++.+. -
T Consensus 303 ~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-g-i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~l 378 (581)
T 4eql_A 303 ETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSETTF-G-INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVDL 378 (581)
T ss_dssp EEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSCEE-E-ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEEG
T ss_pred EEEcCCC--hHHHHHHHHHHcCCCccccCcccccccee-e-eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEeCH
Confidence 4555555 433333333333 67777 9999999642 2 22111111122221 11 235567775332 2
Q ss_pred cccCCCCceEEEEeCCCcCcccCCCccccccccCCCCeeecccEEEEcCCCCCCCccccCceEEEEccCCCeeeeCCcee
Q 012261 288 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 367 (467)
Q Consensus 288 ~~~~~g~~GEL~v~~~~~~~gY~~~~~~t~~~~~~~gw~~TGD~~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~ 367 (467)
..+..|+.+||+++..+ |.|. |++||++++..-+. . ...+.|.||.+|++++ .|++
T Consensus 379 ~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~-----~-~p~i~f~gR~~~~l~~-~Gek 434 (581)
T 4eql_A 379 EDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYN-----N-APQFKFVRRENVVLSI-DSDK 434 (581)
T ss_dssp GGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEET-----T-EEEEEEEEETTEEECS-SSCC
T ss_pred HHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCC-----C-CcEEEEEEecCCEEEe-eeeE
Confidence 45668899999998753 3332 99999998874110 0 2589999999999997 8999
Q ss_pred eccHHHHHHHHcCc--------CcceEEEEeeC
Q 012261 368 VEPLELEEAALRSS--------LIRQIVVIGQD 392 (467)
Q Consensus 368 v~p~eIE~~l~~~p--------~V~~~~Vvg~~ 392 (467)
+++.+||+++.+.- .|.|..++...
T Consensus 435 l~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~ 467 (581)
T 4eql_A 435 TNEEDLFKAVSQAKLVLESSGLDLKDFTSYADT 467 (581)
T ss_dssp EEHHHHHHHHHHC--------------CEEEEC
T ss_pred CCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCC
Confidence 99999999988532 25566665543
No 42
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=48.27 E-value=31 Score=25.70 Aligned_cols=39 Identities=10% Similarity=0.010 Sum_probs=30.8
Q ss_pred cHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHHH
Q 012261 370 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL 408 (467)
Q Consensus 370 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~ 408 (467)
..++++.|.+.|.|.+|..+..+...+.-+.+.+.+++.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~ 53 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLD 53 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHH
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHH
Confidence 378999999999999999998777777766666654433
No 43
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=44.65 E-value=32 Score=25.33 Aligned_cols=37 Identities=11% Similarity=-0.072 Sum_probs=28.8
Q ss_pred cHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHH
Q 012261 370 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 406 (467)
Q Consensus 370 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~ 406 (467)
..++++.|.+.|.|.+|..+..+...+.-+.+.+.++
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~ 51 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDK 51 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHH
Confidence 3789999999999999999987766666666655443
No 44
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.85 E-value=1.7e+02 Score=26.14 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=37.6
Q ss_pred CCEEEEECChh--HHHHHHHhH-HHhhcCceEEec----CHHHHHHHHhhcCCcEeec
Q 012261 72 GDKFLSMLPPW--HVYERACGY-FIFSRGIELMYT----AVRNLKDDLQRYQPHYMIS 122 (467)
Q Consensus 72 ~d~~l~~lPl~--h~~g~~~~~-~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~ 122 (467)
.-+++...+.. |..|....- ..-..|..++.. +++++++.+++++|+++..
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34566666543 888876554 446788888774 7899999999999998766
No 45
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=41.24 E-value=39 Score=25.63 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=34.3
Q ss_pred cHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHHHHHH
Q 012261 370 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAA 411 (467)
Q Consensus 370 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~~~~~ 411 (467)
..++++.|.++|.|.+|..+..+...+.-+.+.+.+++..+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D~ll~v~~~d~~~l~~~l 56 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDDVV 56 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHHHC
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCEEEEEEECCHHHHHHHH
Confidence 478999999999999999998888888877777776655543
No 46
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=34.84 E-value=1e+02 Score=31.38 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=53.8
Q ss_pred HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHHH
Q 012261 61 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYS 132 (467)
Q Consensus 61 ~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~ 132 (467)
+......|+.++|++...+|-+..+ ....+.++..|+..+.. +...+...+++.+++.++..+.....+..
T Consensus 66 A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 66 ASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp HHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 3444456899999999999876432 33445668999988885 47788999999999999998877766544
No 47
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=32.12 E-value=1.1e+02 Score=31.02 Aligned_cols=70 Identities=7% Similarity=-0.000 Sum_probs=52.6
Q ss_pred hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHHH
Q 012261 62 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYS 132 (467)
Q Consensus 62 ~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~ 132 (467)
......++.++|++...+|-+..+ ....+.++..|+..+.. ++..+...+++.++..++..+.....+..
T Consensus 63 ~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 136 (529)
T 2v7b_A 63 SALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQ 136 (529)
T ss_dssp HHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHH
T ss_pred HHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHH
Confidence 334456899999999999876433 33445668999988875 47789999999999999998877655443
No 48
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=31.98 E-value=1.2e+02 Score=30.97 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=51.9
Q ss_pred hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHH
Q 012261 62 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLY 131 (467)
Q Consensus 62 ~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~ 131 (467)
......|+.++|++...+|-+..+ ....+.++..|+..+.. +...+...+++.++.+++..+.....+.
T Consensus 62 ~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 62 GGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp HHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred HHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 344457899999999999876332 33445668999988885 4678889999999999998887665443
No 49
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=30.81 E-value=1.1e+02 Score=31.10 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=54.0
Q ss_pred HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHHHH
Q 012261 61 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSG 133 (467)
Q Consensus 61 ~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~ 133 (467)
+......|+.++|++...+|-+..+ ....+.++..|+..+.. +...+...++..++.+++..+.....+...
T Consensus 63 A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~ 138 (536)
T 3ni2_A 63 ASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDF 138 (536)
T ss_dssp HHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHH
Confidence 3344457899999999999876432 33445668999988875 577889999999999999888776666543
No 50
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=29.96 E-value=1.1e+02 Score=31.30 Aligned_cols=72 Identities=7% Similarity=-0.022 Sum_probs=54.1
Q ss_pred HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHHHH
Q 012261 61 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSG 133 (467)
Q Consensus 61 ~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~~ 133 (467)
+......|+.++|++...+|-+..+ ....+.++..|+..+.. +...+...++..++++++..+.....+...
T Consensus 64 A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 64 AEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp HHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 3344456899999999999866332 33445668999988875 577899999999999999988877666543
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=27.19 E-value=1.6e+02 Score=29.72 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=51.8
Q ss_pred HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHH
Q 012261 61 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLY 131 (467)
Q Consensus 61 ~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~ 131 (467)
+......++.++|++...+|-+..+ ....+.++..|+..+.. +...+...+++.++.+++..+.....+.
T Consensus 57 A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 57 ADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp HHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred HHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 3444456899999999999876332 33445668999988885 4678888999999999998776655443
No 52
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=26.87 E-value=1.5e+02 Score=30.54 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=49.3
Q ss_pred cCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHH
Q 012261 67 VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLY 131 (467)
Q Consensus 67 ~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~ 131 (467)
+|+.++|++...+|-+..+ ....+.++..|+..+.. +...+...++..++.+++..+.....+.
T Consensus 94 ~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 94 CGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred cCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 3899999999999876433 33445668999988875 4678889999999999998887665543
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=25.93 E-value=1.3e+02 Score=30.14 Aligned_cols=71 Identities=10% Similarity=-0.086 Sum_probs=52.8
Q ss_pred HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHHH
Q 012261 61 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYS 132 (467)
Q Consensus 61 ~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~ 132 (467)
+......++.++|++...+|-+..+ ....+.++..|+..+.. +.+.+...+++.++.+++..+.....+..
T Consensus 45 A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 45 ASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp HHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 3344456899999999999876432 33445668999988885 47788899999999999988877665433
No 54
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=25.92 E-value=2.3e+02 Score=29.70 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=49.6
Q ss_pred hHhhhc-ccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHH
Q 012261 60 IRSLYD-IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLV 126 (467)
Q Consensus 60 ~~~~~~-~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~ 126 (467)
++.... ..|+.++|++..++|-.-.+ .+..+.++..|+..+.. ++..+...+++.++.+++..+..
T Consensus 126 lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 126 VAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp HHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 334444 67899999999999977432 33445668999887774 57889999999999999886643
No 55
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=25.67 E-value=1.2e+02 Score=30.47 Aligned_cols=69 Identities=9% Similarity=0.005 Sum_probs=51.3
Q ss_pred HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHH
Q 012261 61 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETL 130 (467)
Q Consensus 61 ~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l 130 (467)
+......++.++|++...+|-+..+ ....+.++..|+..+.. +...+...+++.++.+++..+.....+
T Consensus 42 A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 114 (503)
T 4fuq_A 42 ANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGI 114 (503)
T ss_dssp HHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTT
T ss_pred HHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHH
Confidence 3344456899999999999877332 33445668999988885 467888999999999999887665443
No 56
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=24.36 E-value=1.3e+02 Score=24.74 Aligned_cols=38 Identities=0% Similarity=-0.210 Sum_probs=29.5
Q ss_pred cHHHHHHHHcCcCcceEEEEeeCCCceEEEEecChHHH
Q 012261 370 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEV 407 (467)
Q Consensus 370 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~~~~~ 407 (467)
..++.+.+.++|.|.+|..+..+...+..+.+.+.+++
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l 119 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDAL 119 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHH
T ss_pred HHHHHHHHhCCcCeEEEEEEecccCEEEEEEECCHHHH
Confidence 46899999999999999999766666666666665443
No 57
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=23.65 E-value=2e+02 Score=29.16 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=50.9
Q ss_pred hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecC-----------HHHHHHHHhhcCCcEeecchHHHHHH
Q 012261 62 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-----------VRNLKDDLQRYQPHYMISVPLVYETL 130 (467)
Q Consensus 62 ~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~-----------~~~l~~~i~~~~~t~l~~~P~~~~~l 130 (467)
......++.++|++...+|-+..+ ....+.++..|+..+..+ ...+...++..++..+.........+
T Consensus 64 ~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 64 KRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred HHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHH
Confidence 344456899999999999876433 334456689998888753 56788889999999999887765554
Q ss_pred H
Q 012261 131 Y 131 (467)
Q Consensus 131 ~ 131 (467)
.
T Consensus 143 ~ 143 (576)
T 3gqw_A 143 N 143 (576)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=23.16 E-value=2.1e+02 Score=29.19 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=51.4
Q ss_pred HhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEecCH-------HHHHHHHhhcCCcEeecchHHHHHHHH
Q 012261 61 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV-------RNLKDDLQRYQPHYMISVPLVYETLYS 132 (467)
Q Consensus 61 ~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~~~-------~~l~~~i~~~~~t~l~~~P~~~~~l~~ 132 (467)
+......++.++|++...+|-+..+ ....+.++..|+..+..++ ..+...++..++.++...+.....+..
T Consensus 54 A~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (590)
T 3kxw_A 54 AATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA 131 (590)
T ss_dssp HHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC
T ss_pred HHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHH
Confidence 3344456899999999999876432 3344566899998887532 457778899999999998887766543
No 59
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=22.91 E-value=1.6e+02 Score=30.42 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=49.0
Q ss_pred hHhhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchH
Q 012261 60 IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPL 125 (467)
Q Consensus 60 ~~~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~ 125 (467)
++......|+.++|++...+|-...+ ....+.++..|+..+-. +++.+...+++.++..++..+.
T Consensus 99 ~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 99 AANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp HHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecc
Confidence 33444557999999999999876433 33445668999988874 5788999999999999987654
No 60
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=22.77 E-value=1.2e+02 Score=30.90 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=51.9
Q ss_pred hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHHHHHH
Q 012261 62 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYS 132 (467)
Q Consensus 62 ~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~~l~~ 132 (467)
......|+.++|++...+|-+..+ ....+.++..|+..+.. +.+.+...+++.++.+++..+.....+..
T Consensus 67 ~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (548)
T 2d1s_A 67 KALQNYGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140 (548)
T ss_dssp HHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred HHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 333446899999999998866322 23445668899988874 47789999999999999988877665543
No 61
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=21.90 E-value=2e+02 Score=28.78 Aligned_cols=67 Identities=7% Similarity=-0.072 Sum_probs=47.8
Q ss_pred hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeec--chHHHHH
Q 012261 62 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMIS--VPLVYET 129 (467)
Q Consensus 62 ~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~--~P~~~~~ 129 (467)
......|+.++|++...+|-+..+ ....+.++..|+..+.. +++.+...+++.+++.+.. .+.....
T Consensus 44 ~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 44 ARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp HHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred HHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 333446899999999999876433 33445668999988875 4678888999999999887 5554433
No 62
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.76 E-value=1.2e+02 Score=25.59 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=25.7
Q ss_pred cHHHHHHHHcCcCcceEEEEeeCCCceEEEEecC
Q 012261 370 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD 403 (467)
Q Consensus 370 p~eIE~~l~~~p~V~~~~Vvg~~~~~~~a~vv~~ 403 (467)
..++.+.|.++|.|.+|..+..+...+.-+.+.+
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d 112 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPD 112 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEeeecCCCCCEEEEEEECC
Confidence 4688899999999999998865555555555544
No 63
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=21.14 E-value=2.2e+02 Score=29.16 Aligned_cols=66 Identities=6% Similarity=-0.070 Sum_probs=49.0
Q ss_pred hhhcccCCCCCCEEEEECChhHHHHHHHhHHHhhcCceEEec----CHHHHHHHHhhcCCcEeecchHHHH
Q 012261 62 SLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYE 128 (467)
Q Consensus 62 ~~~~~~~~~~~d~~l~~lPl~h~~g~~~~~~~l~~G~~~v~~----~~~~l~~~i~~~~~t~l~~~P~~~~ 128 (467)
......++.++|++...+|-+..+ ....+.++..|+..+.. +...+...+++.++..++..+....
T Consensus 79 ~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 79 RIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp HHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred HHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 333446899999999998876432 33445668999988875 4678888999999999988775543
Done!