BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012262
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 173/316 (54%), Gaps = 12/316 (3%)
Query: 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIP 90
IGV YG + +NLP + +L +S I +R+Y AD + AL N+G+G+++ + +
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 91 ALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQXXXXXXXXXXXXXX 150
+A+ + A W+ +NV P+YPA I I GNEV Q +Q
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEV-----QGGATQSILPAMRNLNAALS 115
Query: 151 XSLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQ 210
+ G IKVST +A S PPS+G F + M + + L G+P N YP+FAY+
Sbjct: 116 AAGLGAIKVSTSIRFDEVANSFPPSAGVF-KNAYMTDVARLLASTGAPLLANVYPYFAYR 174
Query: 211 SDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGW 270
+P +L + FQP D G+ Y ++FDA VDAV++AL G V++VV+E+GW
Sbjct: 175 DNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGW 234
Query: 271 PYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFE 330
P G S NA+ YN LI H+ GTP ++++TYIFA+++E+ K G A E
Sbjct: 235 PSAGG---FAASAGNARTYNQGLINHVG--GGTP-KKREALETYIFAMFNENQKTGDATE 288
Query: 331 RSFGLFKPDLSAAYDV 346
RSFGLF PD S AY++
Sbjct: 289 RSFGLFNPDKSPAYNI 304
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 179/318 (56%), Gaps = 10/318 (3%)
Query: 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIP 90
IGV YG + +NLPPP+ L +S +I ++RLY + A ++AL N+ + +++ D+
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 91 ALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQXXXXXXXXXXXXXX 150
+LAS+P+AA WI NV+ ++P+ I VGNE++ +D L
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD--LAQYILPAMRNIYNALSS 118
Query: 151 XSLGGKIKVSTVHAMSVLAQSDPPSSGSF--IRQDTMRGILQFLKDHGSPFTINPYPFFA 208
L +IKVST VL S PPS+G+F Q + I+QFL +G+P +N YP+F+
Sbjct: 119 AGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFS 178
Query: 209 YQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAET 268
Y +P +L + LF + V G Y N+FDA VDAV +AL +G +V +VV+E+
Sbjct: 179 YTGNPGQISLPYALFTASGVVVQDGR-FSYQNLFDAIVDAVFAALERVGGANVAVVVSES 237
Query: 269 GWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPA 328
GWP G E S NA+ YN NLI H+ GTP PGK ++ YIF +++E+ K G
Sbjct: 238 GWPSAGGGAEA--STSNAQTYNQNLIRHVG--GGTPRRPGKEIEAYIFEMFNENQKAG-G 292
Query: 329 FERSFGLFKPDLSAAYDV 346
E++FGLF P+ Y +
Sbjct: 293 IEQNFGLFYPNKQPVYQI 310
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 170/322 (52%), Gaps = 12/322 (3%)
Query: 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIP 90
IGV YG++A+NLP KL + +I+K+R+Y + AL + + I++ + D+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 91 ALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQXXX-XXXXXXXXXX 149
ALA +P+ A W+ N+ +P K I VGNEV + ++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 150 XXSLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFF 207
L +IKVST +L + PP F + + I+ FL H P N YP+F
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 208 AYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAE 267
+ + L++ LF R D+G Y N+FDA VD+++ A +G +++EI+V+E
Sbjct: 182 GHIDNTNAVPLSYALFNQQR-RNDTG----YQNLFDALVDSMYFATEKLGGQNIEIIVSE 236
Query: 268 TGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGP 327
+GWP G P +++NA+ Y NLI H++ AGTP PGK+++TY+FA++DE+ K G
Sbjct: 237 SGWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 328 AFERSFGLFKPDLSAAYDVGIS 349
A E+ FGLF PD Y + +
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/322 (33%), Positives = 169/322 (52%), Gaps = 12/322 (3%)
Query: 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIP 90
IGV YG++A+NLP KL + +I+K+R+Y + AL + + I++ + D+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 91 ALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQXXX-XXXXXXXXXX 149
ALA +P+ A W+ N+ +P K I VGNEV + ++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 150 XXSLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ--DTMRGILQFLKDHGSPFTINPYPFF 207
L +IKVST +L + PP F + + I+ FL H P N YP+F
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 208 AYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAE 267
+ + L++ LF R D+G Y N+FDA VD+++ A +G +++EI+V+
Sbjct: 182 GHIDNTNAVPLSYALFNQQR-RNDTG----YQNLFDALVDSMYFATEKLGGQNIEIIVSA 236
Query: 268 TGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGP 327
+GWP G P +++NA+ Y NLI H++ AGTP PGK+++TY+FA++DE+ K G
Sbjct: 237 SGWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 328 AFERSFGLFKPDLSAAYDVGIS 349
A E+ FGLF PD Y + +
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNFN 315
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 177 bits (450), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 180/326 (55%), Gaps = 18/326 (5%)
Query: 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIP 90
+GV YG +NLPP + L + ++I ++R+Y + A+++AL + + +++G + D+
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 91 ALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQXXX-XXXXXXXXX 148
+L ++P+ A W+ NV F+ + + I VGNE+ ++ ++Q
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 149 XXXSLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRG----ILQFLKDHGSPFTINPY 204
L +IKVST ++++ S PPS+G+F +D +R I++FL SP N Y
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAF--RDDVRSYLNPIIRFLSSIRSPLLANIY 178
Query: 205 PFFAYQSDPRPETLAFCLF-QPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEI 263
P+F Y +PR +L + LF P+ D G Y N+FDA +DA++SAL +E+
Sbjct: 179 PYFTYAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEV 236
Query: 264 VVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDL 323
VV+E+GWP G + +N + Y NLI H++ GTP P ++++TY+FA++DE+
Sbjct: 237 VVSESGWPSAG---AFAATFDNGRTYLSNLIQHVKR--GTPKRPKRAIETYLFAMFDEN- 290
Query: 324 KPGPAFERSFGLFKPDLSAAYDVGIS 349
K P E+ FGLF P+ Y++ S
Sbjct: 291 KKQPEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 167/318 (52%), Gaps = 16/318 (5%)
Query: 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIP 90
IGV YG A+NLP + + +S I+ +RLY + A ++A+ TG+ +V+GA + +
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 91 ALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQXXXXXXXXXXXXXX 150
LA+ P AA W+ SN+ YP + VGNEV +NL+
Sbjct: 61 NLAASPAAAASWVKSNIQA-YPKVSFRYVCVGNEVAGGATRNLVPAMKNVHGALVAAGL- 118
Query: 151 XSLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDT--MRGILQFLKDHGSPFTINPYPFFA 208
G IKV+T + ++L PPS+GSF + M ++QFL +P N YP+ A
Sbjct: 119 ----GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLA 174
Query: 209 YQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAET 268
+ +P + + LF + V G Y N+FD VDA ++A+ G V++VV+E+
Sbjct: 175 WAYNPSAMDMGYALFNASGTVVRDGA-YGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSES 233
Query: 269 GWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPA 328
GWP G + NA+ YN +LI H+ GTP PG +++TYIFA+++E+ K
Sbjct: 234 GWPSGGG---TAATPANARFYNQHLINHVGR--GTPRHPG-AIETYIFAMFNENQKD-SG 286
Query: 329 FERSFGLFKPDLSAAYDV 346
E+++GLF P++ Y +
Sbjct: 287 VEQNWGLFYPNMQHVYPI 304
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 73/87 (83%)
Query: 379 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKN 438
WCVPK G+SD QL +++YACSQGIDC PIQPGGACFEPNTV +HAA+ MNLYYQ + +N
Sbjct: 13 WCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRN 72
Query: 439 PWNCDFSKTATLTSQNPSYNGCVYPSG 465
WNCDFS+TATLT+ NPSY C +PSG
Sbjct: 73 SWNCDFSQTATLTNTNPSYGACNFPSG 99
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 242 FDAQVDAVHSALNAMGFKDVEIVVAETGW 270
D QV A+ AL+A GFKD I+ T +
Sbjct: 167 MDGQVQAIRQALDAAGFKDTAIMSYSTKF 195
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 242 FDAQVDAVHSALNAMGFKDVEIVVAETGW 270
D QV A+ AL+A GFKD I+ T +
Sbjct: 167 MDGQVQAIRQALDAAGFKDTAIMSYSTKF 195
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 242 FDAQVDAVHSALNAMGFKDVEIVVAETGW 270
D QV A+ AL+A GFKD I+ T +
Sbjct: 167 MDGQVQAIRQALDAAGFKDTAIMSYSTKF 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,278,971
Number of Sequences: 62578
Number of extensions: 469704
Number of successful extensions: 946
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 13
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)