Query 012262
Match_columns 467
No_of_seqs 284 out of 1658
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 00:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 3.6E-84 7.8E-89 652.2 19.3 308 31-348 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 5.3E-46 1.1E-50 356.1 22.7 252 27-340 42-305 (305)
3 smart00768 X8 Possibly involve 100.0 2.3E-29 5.1E-34 207.5 8.8 85 378-462 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 2.8E-22 6.1E-27 162.5 6.5 72 378-449 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.8 1E-18 2.3E-23 173.8 15.2 237 30-341 29-294 (314)
6 PF07745 Glyco_hydro_53: Glyco 99.1 6.3E-09 1.4E-13 106.3 18.2 247 45-346 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.7 6.3E-07 1.4E-11 88.7 15.8 202 46-299 66-328 (403)
8 PRK10150 beta-D-glucuronidase; 98.4 8.8E-05 1.9E-09 82.1 24.5 242 46-346 316-585 (604)
9 PF00150 Cellulase: Cellulase 98.3 8.6E-05 1.9E-09 72.9 20.0 205 30-275 10-251 (281)
10 smart00633 Glyco_10 Glycosyl h 97.5 0.01 2.2E-07 58.6 19.4 213 68-345 20-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 97.2 0.015 3.2E-07 57.2 15.4 189 78-341 39-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 96.9 0.053 1.1E-06 54.6 17.4 96 30-125 17-132 (298)
13 TIGR03356 BGL beta-galactosida 96.5 0.41 8.9E-06 51.1 21.0 44 46-89 57-119 (427)
14 PRK10340 ebgA cryptic beta-D-g 94.9 0.68 1.5E-05 54.7 16.3 98 30-127 336-452 (1021)
15 PLN02998 beta-glucosidase 94.4 7.2 0.00016 42.5 21.5 45 46-90 85-148 (497)
16 PLN02814 beta-glucosidase 94.2 8.7 0.00019 42.0 21.7 45 46-90 80-143 (504)
17 PF03662 Glyco_hydro_79n: Glyc 90.2 1.5 3.2E-05 45.1 8.9 193 68-291 113-316 (319)
18 PF02449 Glyco_hydro_42: Beta- 88.5 1.1 2.4E-05 46.7 6.8 82 46-127 13-140 (374)
19 PF01229 Glyco_hydro_39: Glyco 86.6 28 0.0006 37.8 16.4 247 51-343 48-350 (486)
20 PRK09936 hypothetical protein; 85.7 5 0.00011 40.6 9.2 58 31-88 22-96 (296)
21 cd02875 GH18_chitobiase Chitob 83.4 8 0.00017 40.3 10.0 136 56-208 55-191 (358)
22 COG3934 Endo-beta-mannanase [C 80.1 5.8 0.00013 42.7 7.5 186 100-346 123-312 (587)
23 PF00232 Glyco_hydro_1: Glycos 79.8 1.3 2.8E-05 47.6 2.8 116 46-166 61-224 (455)
24 PRK09593 arb 6-phospho-beta-gl 74.9 1.3E+02 0.0029 32.7 24.5 45 46-90 76-140 (478)
25 PRK09525 lacZ beta-D-galactosi 73.5 16 0.00034 43.6 9.5 97 30-126 352-464 (1027)
26 PF00925 GTP_cyclohydro2: GTP 67.7 8 0.00017 35.9 4.4 38 48-85 131-168 (169)
27 PRK13511 6-phospho-beta-galact 62.3 31 0.00068 37.3 8.4 45 46-90 57-120 (469)
28 TIGR00505 ribA GTP cyclohydrol 61.7 13 0.00028 35.3 4.7 33 49-81 131-163 (191)
29 PRK00393 ribA GTP cyclohydrola 61.3 13 0.00028 35.4 4.7 33 49-81 134-166 (197)
30 smart00481 POLIIIAc DNA polyme 61.1 31 0.00067 26.3 6.0 44 43-86 15-63 (67)
31 cd00598 GH18_chitinase-like Th 61.0 34 0.00074 31.9 7.5 85 68-153 53-142 (210)
32 PF13547 GTA_TIM: GTA TIM-barr 56.4 18 0.0004 36.5 4.8 80 114-205 18-108 (299)
33 PF14488 DUF4434: Domain of un 54.7 93 0.002 28.8 9.1 100 46-151 23-151 (166)
34 cd02874 GH18_CFLE_spore_hydrol 54.0 47 0.001 33.5 7.6 83 67-153 48-138 (313)
35 COG4782 Uncharacterized protei 53.6 49 0.0011 34.7 7.5 59 238-299 125-186 (377)
36 PRK09589 celA 6-phospho-beta-g 53.2 28 0.0006 37.8 6.1 45 46-90 70-134 (476)
37 TIGR01579 MiaB-like-C MiaB-lik 53.2 1.1E+02 0.0024 32.3 10.5 61 132-209 270-330 (414)
38 PRK12485 bifunctional 3,4-dihy 52.2 17 0.00037 38.2 4.1 33 48-81 330-362 (369)
39 PLN02849 beta-glucosidase 52.0 55 0.0012 35.9 8.1 45 46-90 82-145 (503)
40 cd00641 GTP_cyclohydro2 GTP cy 51.3 24 0.00052 33.5 4.6 36 49-84 133-168 (193)
41 PRK14019 bifunctional 3,4-dihy 49.2 20 0.00044 37.6 4.1 35 49-84 328-362 (367)
42 PRK09314 bifunctional 3,4-dihy 45.8 27 0.00059 36.3 4.3 34 48-81 300-334 (339)
43 PRK09318 bifunctional 3,4-dihy 45.7 30 0.00064 36.6 4.7 38 49-86 320-357 (387)
44 PF14587 Glyco_hydr_30_2: O-Gl 45.6 2.8E+02 0.006 29.4 11.7 96 68-165 108-228 (384)
45 PRK08815 GTP cyclohydrolase; P 45.4 30 0.00064 36.5 4.6 37 49-85 305-341 (375)
46 PLN03059 beta-galactosidase; P 45.2 2.5E+02 0.0054 32.9 12.1 116 46-164 62-223 (840)
47 PRK15014 6-phospho-beta-glucos 44.3 38 0.00082 36.8 5.4 45 46-90 72-136 (477)
48 PLN02831 Bifunctional GTP cycl 44.2 31 0.00067 37.3 4.6 37 49-85 373-409 (450)
49 COG2113 ProX ABC-type proline/ 44.0 37 0.00079 34.7 4.9 42 47-89 48-91 (302)
50 PRK09311 bifunctional 3,4-dihy 43.9 32 0.00069 36.6 4.6 38 48-85 338-375 (402)
51 COG2730 BglC Endoglucanase [Ca 43.4 1.7E+02 0.0036 31.1 10.0 105 46-151 76-218 (407)
52 PRK09319 bifunctional 3,4-dihy 43.3 33 0.00071 37.9 4.7 39 48-86 342-380 (555)
53 KOG0626 Beta-glucosidase, lact 42.4 46 0.00099 36.5 5.6 76 256-339 403-486 (524)
54 PF05990 DUF900: Alpha/beta hy 41.5 76 0.0016 30.9 6.6 43 254-299 43-88 (233)
55 COG1433 Uncharacterized conser 40.1 63 0.0014 28.5 5.2 40 46-85 55-94 (121)
56 cd06545 GH18_3CO4_chitinase Th 39.3 1.4E+02 0.003 29.2 8.1 81 68-153 50-133 (253)
57 PRK14328 (dimethylallyl)adenos 38.7 3.6E+02 0.0078 28.8 11.8 60 132-208 279-338 (439)
58 smart00636 Glyco_18 Glycosyl h 38.2 1.1E+02 0.0024 31.0 7.4 125 70-208 57-188 (334)
59 PF02449 Glyco_hydro_42: Beta- 36.5 3.5E+02 0.0077 28.0 11.1 55 134-206 208-262 (374)
60 cd02876 GH18_SI-CLP Stabilin-1 36.4 2.4E+02 0.0051 28.5 9.6 129 67-208 54-191 (318)
61 PLN00196 alpha-amylase; Provis 36.2 98 0.0021 33.2 6.9 57 30-86 28-114 (428)
62 cd02872 GH18_chitolectin_chito 36.2 93 0.002 32.0 6.6 120 71-208 62-192 (362)
63 PRK14334 (dimethylallyl)adenos 36.0 5.3E+02 0.011 27.5 12.5 59 132-207 269-327 (440)
64 PRK07198 hypothetical protein; 35.0 35 0.00076 36.1 3.2 38 49-86 338-376 (418)
65 TIGR01233 lacG 6-phospho-beta- 34.7 1.6E+02 0.0034 32.0 8.3 45 46-90 56-119 (467)
66 cd07937 DRE_TIM_PC_TC_5S Pyruv 34.4 4.3E+02 0.0094 26.3 10.9 92 46-148 94-191 (275)
67 COG0807 RibA GTP cyclohydrolas 34.1 78 0.0017 30.3 5.1 40 49-88 133-172 (193)
68 COG4669 EscJ Type III secretor 33.6 98 0.0021 30.6 5.8 65 46-128 34-98 (246)
69 PF14871 GHL6: Hypothetical gl 33.4 1.1E+02 0.0023 27.3 5.7 43 45-87 2-67 (132)
70 PF00331 Glyco_hydro_10: Glyco 32.4 47 0.001 33.9 3.7 218 67-344 62-311 (320)
71 TIGR03628 arch_S11P archaeal r 32.2 1.1E+02 0.0023 26.9 5.2 36 46-81 53-101 (114)
72 PF12876 Cellulase-like: Sugar 32.2 72 0.0016 25.9 4.1 48 113-162 8-63 (88)
73 PRK09989 hypothetical protein; 32.1 4.3E+02 0.0094 25.5 10.4 51 31-82 4-58 (258)
74 PF06117 DUF957: Enterobacteri 31.8 98 0.0021 24.2 4.3 42 97-150 11-54 (65)
75 PRK14327 (dimethylallyl)adenos 31.6 5.2E+02 0.011 28.4 11.7 60 132-208 344-403 (509)
76 TIGR03632 bact_S11 30S ribosom 31.2 98 0.0021 26.6 4.9 37 46-82 50-91 (108)
77 PRK14330 (dimethylallyl)adenos 31.1 5.7E+02 0.012 27.2 11.8 76 117-209 251-332 (434)
78 PF06180 CbiK: Cobalt chelatas 31.0 4.4E+02 0.0095 26.4 10.1 142 41-211 56-210 (262)
79 PRK14336 (dimethylallyl)adenos 30.7 4.9E+02 0.011 27.6 11.1 60 132-208 256-315 (418)
80 PRK13347 coproporphyrinogen II 30.2 57 0.0012 35.0 4.0 21 134-154 262-282 (453)
81 PF00834 Ribul_P_3_epim: Ribul 29.4 3.8E+02 0.0083 25.5 9.1 92 45-154 69-166 (201)
82 PF02055 Glyco_hydro_30: O-Gly 28.3 8.2E+02 0.018 26.8 13.3 91 75-165 166-283 (496)
83 CHL00041 rps11 ribosomal prote 28.2 1.4E+02 0.003 26.1 5.4 36 46-81 63-103 (116)
84 cd07944 DRE_TIM_HOA_like 4-hyd 27.7 4.5E+02 0.0098 26.0 9.7 89 47-148 86-180 (266)
85 PRK14332 (dimethylallyl)adenos 27.5 4.5E+02 0.0097 28.3 10.2 130 116-269 261-396 (449)
86 cd06418 GH25_BacA-like BacA is 27.3 5.7E+02 0.012 24.6 11.8 104 47-154 24-143 (212)
87 COG3250 LacZ Beta-galactosidas 26.5 2.4E+02 0.0052 32.9 8.3 80 46-127 324-409 (808)
88 PRK09607 rps11p 30S ribosomal 26.5 1.6E+02 0.0035 26.4 5.5 36 46-81 60-108 (132)
89 PRK09852 cryptic 6-phospho-bet 26.3 1.5E+02 0.0033 32.2 6.4 46 46-91 74-139 (474)
90 COG4213 XylF ABC-type xylose t 26.2 1.6E+02 0.0035 30.4 6.1 77 67-163 175-251 (341)
91 PRK14339 (dimethylallyl)adenos 25.7 6.6E+02 0.014 26.7 11.0 60 132-208 262-321 (420)
92 COG0621 MiaB 2-methylthioadeni 25.5 2.5E+02 0.0055 30.3 7.8 134 27-208 192-336 (437)
93 cd04743 NPD_PKS 2-Nitropropane 25.3 7.7E+02 0.017 25.5 10.9 79 29-125 56-134 (320)
94 TIGR01125 MiaB-like tRNA modif 25.0 8.1E+02 0.018 25.9 11.6 61 132-209 267-327 (430)
95 COG4213 XylF ABC-type xylose t 24.9 2.7E+02 0.0058 28.8 7.3 35 5-39 2-36 (341)
96 PRK14331 (dimethylallyl)adenos 24.8 7.9E+02 0.017 26.1 11.5 112 132-268 277-388 (437)
97 cd02873 GH18_IDGF The IDGF's ( 24.6 4.9E+02 0.011 27.6 9.8 59 133-209 167-225 (413)
98 PF14606 Lipase_GDSL_3: GDSL-l 24.5 3E+02 0.0066 25.9 7.3 54 240-299 78-133 (178)
99 PRK15014 6-phospho-beta-glucos 24.5 1.5E+02 0.0033 32.2 6.0 48 24-71 81-140 (477)
100 PRK09997 hydroxypyruvate isome 24.3 6.5E+02 0.014 24.3 11.3 50 32-82 5-58 (258)
101 PF07172 GRP: Glycine rich pro 23.9 58 0.0013 27.5 2.1 20 4-23 1-20 (95)
102 PF00411 Ribosomal_S11: Riboso 23.6 1.1E+02 0.0024 26.3 3.9 37 46-82 50-91 (110)
103 PF13547 GTA_TIM: GTA TIM-barr 23.5 85 0.0018 31.9 3.5 41 259-299 205-265 (299)
104 PRK09852 cryptic 6-phospho-bet 23.4 1.6E+02 0.0034 32.1 5.9 48 24-71 83-142 (474)
105 PF13377 Peripla_BP_3: Peripla 23.1 1.4E+02 0.0029 26.0 4.5 93 49-164 1-105 (160)
106 PF01055 Glyco_hydro_31: Glyco 22.2 4.7E+02 0.01 27.6 9.2 131 132-318 40-178 (441)
107 TIGR03822 AblA_like_2 lysine-2 22.1 5E+02 0.011 26.5 9.0 41 47-87 157-207 (321)
108 TIGR03234 OH-pyruv-isom hydrox 21.6 2.2E+02 0.0048 27.4 6.1 51 31-82 3-57 (254)
109 cd06598 GH31_transferase_CtsZ 21.3 8.6E+02 0.019 24.6 11.9 69 133-209 22-96 (317)
110 PRK08091 ribulose-phosphate 3- 20.8 4.9E+02 0.011 25.5 8.1 95 45-154 80-179 (228)
111 PRK06552 keto-hydroxyglutarate 20.8 7.6E+02 0.016 23.7 10.3 88 44-149 118-210 (213)
112 PF13756 Stimulus_sens_1: Stim 20.7 1E+02 0.0023 26.5 3.1 24 45-68 3-29 (112)
113 TIGR01233 lacG 6-phospho-beta- 20.4 2E+02 0.0044 31.1 6.0 48 24-71 65-123 (467)
114 cd01543 PBP1_XylR Ligand-bindi 20.1 5.7E+02 0.012 24.2 8.6 100 46-166 98-210 (265)
115 KOG0078 GTP-binding protein SE 20.0 2E+02 0.0044 27.8 5.2 62 58-125 61-127 (207)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=3.6e-84 Score=652.20 Aligned_cols=308 Identities=51% Similarity=0.913 Sum_probs=252.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhcccc
Q 012262 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPF 110 (467)
Q Consensus 31 ~GvnYg~~~~nlp~~~~vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~ 110 (467)
||||||+.++|||+|.+++++||+++|++||||++|+++|+|++++||+|++||+|++++++++++.+|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccc-cch-hhhH
Q 012262 111 YPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIR-QDT-MRGI 188 (467)
Q Consensus 111 ~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~-~~~-~~~l 188 (467)
+|.++|++|+||||++... ... .|+|+|+++|++|++.||+++|||+|+++++++.++||||+|.|+. ... |+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~-~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGT-DNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCS-GGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCc-cce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 9999999999999999863 222 8999999999999999999889999999999999999999999998 445 9999
Q ss_pred HHHHHhcCCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEEee
Q 012262 189 LQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAET 268 (467)
Q Consensus 189 l~fL~~~~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtET 268 (467)
++||.++++|||+|+||||.+..+|.+++||||+|+++.+++|. +++|+||||+|+|++++||+|+|+++++|+|+||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998877765 7899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCCCCcCCCceeeecCCCCeeeeeec
Q 012262 269 GWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFERSFGLFKPDLSAAYDVGI 348 (467)
Q Consensus 269 GWPS~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF~~FDE~wK~g~~~E~~wGlf~~d~~~ky~l~~ 348 (467)
||||+|+ .+++++||+.|++++++++. .|||+||+..+++||||||||+||+|+.+|||||||++||++||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999998 45899999999999999986 699999999999999999999999997899999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-46 Score=356.06 Aligned_cols=252 Identities=25% Similarity=0.382 Sum_probs=206.1
Q ss_pred cCCcceEEecCCCCCCCCh--HH---HHHHHhhCCCCeEEEecCC----HHHHHHHHhcCCEEEEeeCCCCcccccCCHH
Q 012262 27 SQSFIGVNYGQVADNLPPP--AA---TAKLLQSTSIQKLRLYGAD----PAIIKALANTGVGIVIGASSGDIPALASDPN 97 (467)
Q Consensus 27 ~~~~~GvnYg~~~~nlp~~--~~---vv~llk~~~i~~VRiY~~d----~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~ 97 (467)
+.+..+|+||++.+++.|| ++ ++++|++.+ ..||+|.+| .+|++|+...|++|.||||..+..+- +
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~--~-- 116 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHD--A-- 116 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhh--h--
Confidence 4467899999999999998 33 577788765 399999987 58999999999999999998654332 1
Q ss_pred HHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCc
Q 012262 98 AATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSG 177 (467)
Q Consensus 98 ~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g 177 (467)
.++-+...+.++..++.|++|.||||+|+| +..++.+|+.+|.++|.+|+.+|++ +||+|++.|.++.++
T Consensus 117 -~~~til~ay~~~~~~d~v~~v~VGnEal~r-~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n------ 186 (305)
T COG5309 117 -VEKTILSAYLPYNGWDDVTTVTVGNEALNR-NDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN------ 186 (305)
T ss_pred -HHHHHHHHHhccCCCCceEEEEechhhhhc-CCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC------
Confidence 222355668888888999999999999999 5899999999999999999999997 589999999998873
Q ss_pred cccccchhhhHHHHHHhcCCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcC
Q 012262 178 SFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMG 257 (467)
Q Consensus 178 ~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g 257 (467)
| -|+++.||+|+|.||||+.....+ .. + .++-.|++-|+.+. |
T Consensus 187 ---------p---~l~~~SDfia~N~~aYwd~~~~a~--------------~~-------~-~f~~~q~e~vqsa~---g 229 (305)
T COG5309 187 ---------P---ELCQASDFIAANAHAYWDGQTVAN--------------AA-------G-TFLLEQLERVQSAC---G 229 (305)
T ss_pred ---------h---HHhhhhhhhhcccchhccccchhh--------------hh-------h-HHHHHHHHHHHHhc---C
Confidence 1 255789999999999999754210 00 1 24545676665542 3
Q ss_pred CCCceEEEEeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCC-CC-cCCCcee
Q 012262 258 FKDVEIVVAETGWPYRGDPNE-VGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKP-GP-AFERSFG 334 (467)
Q Consensus 258 ~~~~~vvVtETGWPS~G~~~~-~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF~~FDE~wK~-g~-~~E~~wG 334 (467)
.+|+++|+||||||+|..+| +.||++||+.|++++++.+++ .++++|+||+|||+||. |. .+|+|||
T Consensus 230 -~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywG 299 (305)
T COG5309 230 -TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWG 299 (305)
T ss_pred -CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhcee
Confidence 34999999999999999986 569999999999999999876 68999999999999994 54 7999999
Q ss_pred eecCCC
Q 012262 335 LFKPDL 340 (467)
Q Consensus 335 lf~~d~ 340 (467)
+++.|+
T Consensus 300 v~~s~~ 305 (305)
T COG5309 300 VLSSDR 305 (305)
T ss_pred eeccCC
Confidence 998874
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=2.3e-29 Score=207.52 Aligned_cols=85 Identities=52% Similarity=1.031 Sum_probs=82.6
Q ss_pred eeEEecCCCChHHHHHHHhhhcCCCCCCCccCCCCCcCCCCchhhhHhHHHhHHHHhcCCCCCCCCCCCceEEEecCCCC
Q 012262 378 GWCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSY 457 (467)
Q Consensus 378 ~~Cv~~~~~~~~~l~~~l~~aC~~~~dC~~I~~~g~C~~~~t~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~~~~~~ps~ 457 (467)
+|||+|+++++++||++|||||++++||++|++||+||+|+++++|||||||+|||++++..++|||+|+|+++++|||+
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 59999999999999999999999659999999999999999999999999999999999999999999999999999999
Q ss_pred CCeec
Q 012262 458 NGCVY 462 (467)
Q Consensus 458 ~~C~~ 462 (467)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99986
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.86 E-value=2.8e-22 Score=162.51 Aligned_cols=72 Identities=49% Similarity=0.918 Sum_probs=60.5
Q ss_pred eeEEecCCCChHHHHHHHhhhcCC-CCCCCccCCCCC-----cCCCCchhhhHhHHHhHHHHhcCCCCCCCCCCCceE
Q 012262 378 GWCVPKAGISDAQLQASLDYACSQ-GIDCSPIQPGGA-----CFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTAT 449 (467)
Q Consensus 378 ~~Cv~~~~~~~~~l~~~l~~aC~~-~~dC~~I~~~g~-----C~~~~t~~~~aSya~N~Yyq~~~~~~~~CdF~G~a~ 449 (467)
+|||+|+++++++|+++|||||++ ++||++|+++|. .|++|+.++|||||||+|||++++...+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999997 699999999998 444445799999999999999999999999999997
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.79 E-value=1e-18 Score=173.80 Aligned_cols=237 Identities=19% Similarity=0.341 Sum_probs=129.8
Q ss_pred cceEEecCCCC-------C-CCCh---HHHHHHHhhCCCCeEEEecCC-----HHHHHHHHhcCCEEEEeeCCCCccccc
Q 012262 30 FIGVNYGQVAD-------N-LPPP---AATAKLLQSTSIQKLRLYGAD-----PAIIKALANTGVGIVIGASSGDIPALA 93 (467)
Q Consensus 30 ~~GvnYg~~~~-------n-lp~~---~~vv~llk~~~i~~VRiY~~d-----~~vl~A~~~tgi~V~lGv~~~~~~~~a 93 (467)
..||.|-+-++ | |..+ ++++.+||++|++.||+|..| ..+|++|++.||.|+++|.... .+|.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 37999998776 2 1122 578999999999999999988 3799999999999999999873 3454
Q ss_pred CCHHHHHHHHHhh-------ccccCCCCeEEEEEeccceeccC-CcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeec
Q 012262 94 SDPNAATQWINSN-------VLPFYPASKIILITVGNEVMISN-DQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAM 165 (467)
Q Consensus 94 ~~~~~a~~Wv~~~-------v~~~~p~~~I~~I~VGNEvl~~~-~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~ 165 (467)
+.. -+..|-... |..|...+|+.++.+||||+... +...++.+.+++|++|+.+++.+++ .|||+.+.+.
T Consensus 108 r~~-P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD 185 (314)
T PF03198_consen 108 RSD-PAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAAD 185 (314)
T ss_dssp TTS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCC-CcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccC
Confidence 332 123452222 33444558999999999999863 4567899999999999999999997 5999999765
Q ss_pred ccccccCCCCCccccccchhhhHHHHHHhc-----CCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccc
Q 012262 166 SVLAQSDPPSSGSFIRQDTMRGILQFLKDH-----GSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMN 240 (467)
Q Consensus 166 ~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~-----~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n 240 (467)
.. .+ ..++.+||.+. .||+++|.|-|.... .|+ .+| |..
T Consensus 186 ~~----------~~-----r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~S-----------tf~-~SG---------y~~ 229 (314)
T PF03198_consen 186 DA----------EI-----RQDLANYLNCGDDDERIDFFGLNSYEWCGDS-----------TFE-TSG---------YDR 229 (314)
T ss_dssp -T----------TT-----HHHHHHHTTBTT-----S-EEEEE----SS-------------HH-HHS---------HHH
T ss_pred Ch----------hH-----HHHHHHHhcCCCcccccceeeeccceecCCC-----------ccc-ccc---------HHH
Confidence 31 11 34788999864 599999999877532 122 122 333
Q ss_pred hHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeec
Q 012262 241 MFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYD 320 (467)
Q Consensus 241 ~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF~~FD 320 (467)
+.+ .+ .++ .+||+.+|.|+.+... |.|.+ +..+.+..+|....| ..+||.|.
T Consensus 230 l~~--------~f--~~y-~vPvffSEyGCn~~~p-----------R~f~e--v~aly~~~Mt~v~SG----GivYEy~~ 281 (314)
T PF03198_consen 230 LTK--------EF--SNY-SVPVFFSEYGCNTVTP-----------RTFTE--VPALYSPEMTDVWSG----GIVYEYFQ 281 (314)
T ss_dssp HHH--------HH--TT--SS-EEEEEE---SSSS--------------TH--HHHHTSHHHHTTEEE----EEES-SB-
T ss_pred HHH--------Hh--hCC-CCCeEEcccCCCCCCC-----------ccchH--hHHhhCccchhheec----eEEEEEec
Confidence 222 22 233 6999999999986652 34433 344443333433333 46889998
Q ss_pred CCCCCCCcCCCceeeecCCCC
Q 012262 321 EDLKPGPAFERSFGLFKPDLS 341 (467)
Q Consensus 321 E~wK~g~~~E~~wGlf~~d~~ 341 (467)
| +.+|||...++.
T Consensus 282 e--------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 282 E--------ANNYGLVEISGD 294 (314)
T ss_dssp ---------SSS--SEEE-TT
T ss_pred c--------CCceEEEEEcCC
Confidence 7 378999887654
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.07 E-value=6.3e-09 Score=106.26 Aligned_cols=247 Identities=17% Similarity=0.223 Sum_probs=123.1
Q ss_pred hHHHHHHHhhCCCCeEEEe--c-------CC-HHH---HHHHHhcCCEEEEeeCCCC---------cc-cccC-CHHH--
Q 012262 45 PAATAKLLQSTSIQKLRLY--G-------AD-PAI---IKALANTGVGIVIGASSGD---------IP-ALAS-DPNA-- 98 (467)
Q Consensus 45 ~~~vv~llk~~~i~~VRiY--~-------~d-~~v---l~A~~~tgi~V~lGv~~~~---------~~-~~a~-~~~~-- 98 (467)
..+.+++||..|++.||+= . .| ..+ .+.+++.||+|+|..--+| ++ +... +.+.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 3678999999999876654 1 12 234 4555689999999987653 11 1111 1111
Q ss_pred --HHHHHHhhccccC-CCCeEEEEEeccceecc--C---CcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccc
Q 012262 99 --ATQWINSNVLPFY-PASKIILITVGNEVMIS--N---DQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQ 170 (467)
Q Consensus 99 --a~~Wv~~~v~~~~-p~~~I~~I~VGNEvl~~--~---~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~ 170 (467)
..++.++-+.... -+..+..|-||||+-.. + .....+.+...++...+++|+..- .+||-.-.. .....
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-~~~~~ 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-NGGDN 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES--TTSH
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-CCCch
Confidence 1122221111110 24678899999997543 1 223456677777777777777443 355432211 11100
Q ss_pred cCCCCCccccccchhhhHHHHHHhc---CCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccchHHHHHH
Q 012262 171 SDPPSSGSFIRQDTMRGILQFLKDH---GSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVD 247 (467)
Q Consensus 171 s~pPS~g~F~~~~~~~~ll~fL~~~---~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~d 247 (467)
.. .+-..+.|... -|+++++.||||... + +-+...++
T Consensus 183 ------~~------~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l---------------------~~l~~~l~ 222 (332)
T PF07745_consen 183 ------DL------YRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L---------------------EDLKNNLN 222 (332)
T ss_dssp ------HH------HHHHHHHHHHTTGG-SEEEEEE-STTST--------H---------------------HHHHHHHH
T ss_pred ------HH------HHHHHHHHHhcCCCcceEEEecCCCCcch-------H---------------------HHHHHHHH
Confidence 01 22333444343 399999999999861 1 11222333
Q ss_pred HHHHHHHHcCCCCceEEEEeeccCCCCCC-----C---------CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccE
Q 012262 248 AVHSALNAMGFKDVEIVVAETGWPYRGDP-----N---------EVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDT 313 (467)
Q Consensus 248 av~~a~~k~g~~~~~vvVtETGWPS~G~~-----~---------~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~ 313 (467)
.+ .++. +|+|+|.|||||..-.. + +-.+|++.|+.|++++++.+.+-.+ +.++-+
T Consensus 223 ~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~Gv 291 (332)
T PF07745_consen 223 DL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGLGV 291 (332)
T ss_dssp HH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEE
T ss_pred HH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeEEE
Confidence 32 2343 58999999999998211 1 0126899999999999999876211 235566
Q ss_pred EEEEee-cCCC-----CCCCcCCCceeeecCCCCeeeee
Q 012262 314 YIFALY-DEDL-----KPGPAFERSFGLFKPDLSAAYDV 346 (467)
Q Consensus 314 yiF~~F-DE~w-----K~g~~~E~~wGlf~~d~~~ky~l 346 (467)
|+-|-- -..+ ..|...|.. +||+.+|++--.|
T Consensus 292 fYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 292 FYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred EeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 655531 1111 123233333 8898888765443
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=6.3e-07 Score=88.67 Aligned_cols=202 Identities=16% Similarity=0.259 Sum_probs=112.9
Q ss_pred HHHHHHHhhCCCCeEEE--e----cCC-----------H---HHHHHHHhcCCEEEEeeCCCCc---ccccCCHHHHHHH
Q 012262 46 AATAKLLQSTSIQKLRL--Y----GAD-----------P---AIIKALANTGVGIVIGASSGDI---PALASDPNAATQW 102 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi--Y----~~d-----------~---~vl~A~~~tgi~V~lGv~~~~~---~~~a~~~~~a~~W 102 (467)
++.++.||..|++.||+ | +.| . ++-+-+++.||||++..--+|- +.-.. .-.+|
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~---kPkaW 142 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK---KPKAW 142 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC---CcHHh
Confidence 56789999999986665 4 333 1 3334456789999999876541 11111 11234
Q ss_pred HHh-------hccccC---------CCCeEEEEEeccceecc--C---CcchHHHHHHHHHHHHHHHHhCCCCCceEEEE
Q 012262 103 INS-------NVLPFY---------PASKIILITVGNEVMIS--N---DQNLISQLLPAMANMQNALNAASLGGKIKVST 161 (467)
Q Consensus 103 v~~-------~v~~~~---------p~~~I~~I~VGNEvl~~--~---~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT 161 (467)
..- .|-.|. -...+..|-||||.-.. + .......+...++.--+++|.. +..|||-.
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~l 220 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVAL 220 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEEE
Confidence 222 221221 13567889999998542 1 1113344444444444444442 23466654
Q ss_pred eeecccccccCCCCCccccccchhhhHHHHHHhcC---CCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccc
Q 012262 162 VHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHG---SPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKY 238 (467)
Q Consensus 162 ~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~---d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y 238 (467)
-.+ + |--.+.|| -+.+-|.+.+ |.|++-.||||...-+ . .
T Consensus 221 Hla-----~--g~~n~~y~------~~fd~ltk~nvdfDVig~SyYpyWhgtl~----------------------n--L 263 (403)
T COG3867 221 HLA-----E--GENNSLYR------WIFDELTKRNVDFDVIGSSYYPYWHGTLN----------------------N--L 263 (403)
T ss_pred Eec-----C--CCCCchhh------HHHHHHHHcCCCceEEeeeccccccCcHH----------------------H--H
Confidence 322 1 11123444 3334444433 8899999999997421 0 1
Q ss_pred cchHHHHHHHHHHHHHHcCCCCceEEEEeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 012262 239 MNMFDAQVDAVHSALNAMGFKDVEIVVAETGW--------------PYRGDPNEVGPSVENAKAYNGNLIAHLRS 299 (467)
Q Consensus 239 ~n~fda~~dav~~a~~k~g~~~~~vvVtETGW--------------PS~G~~~~~~as~~na~~y~~~lv~~~~~ 299 (467)
++.++++-+ + -+|.|+|-||+. |+.+...+-..+++-|++|.+++|..+..
T Consensus 264 ~~nl~dia~-------r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 264 TTNLNDIAS-------R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred HhHHHHHHH-------H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 112222221 2 368999999998 44442212236788899999999999875
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.37 E-value=8.8e-05 Score=82.10 Aligned_cols=242 Identities=13% Similarity=0.088 Sum_probs=136.9
Q ss_pred HHHHHHHhhCCCCeEEEec--CCHHHHHHHHhcCCEEEEeeCCCC---------------ccccc---C---CHHHHHHH
Q 012262 46 AATAKLLQSTSIQKLRLYG--ADPAIIKALANTGVGIVIGASSGD---------------IPALA---S---DPNAATQW 102 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~--~d~~vl~A~~~tgi~V~lGv~~~~---------------~~~~a---~---~~~~a~~W 102 (467)
.++++++|++|++.||+-. .++..+.++-..||-|+.-++.-. ..... . ..+....-
T Consensus 316 ~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA 395 (604)
T ss_pred HHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4578899999999999932 357899999999999997664210 00111 0 01112222
Q ss_pred HHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCcccccc
Q 012262 103 INSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQ 182 (467)
Q Consensus 103 v~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~ 182 (467)
+++.|..+...-.|..-.+|||.-... ......++.+.+.+++..-+ =+|+.+..+.. +|...
T Consensus 396 ~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~Dpt--R~vt~~~~~~~-----~~~~~----- 458 (604)
T PRK10150 396 IRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDPT--RPVTCVNVMFA-----TPDTD----- 458 (604)
T ss_pred HHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCCC--CceEEEecccC-----Ccccc-----
Confidence 444555554334588999999964321 12234455555555554433 35776643210 01000
Q ss_pred chhhhHHHHHHhcCCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCCCce
Q 012262 183 DTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVE 262 (467)
Q Consensus 183 ~~~~~ll~fL~~~~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~~~~ 262 (467)
. +.+..|+++.|.|+=|-. +..+. + .....++..++.. .++ + ++|
T Consensus 459 ----~----~~~~~Dv~~~N~Y~~wy~--~~~~~--~-----------------~~~~~~~~~~~~~---~~~--~-~kP 503 (604)
T PRK10150 459 ----T----VSDLVDVLCLNRYYGWYV--DSGDL--E-----------------TAEKVLEKELLAW---QEK--L-HKP 503 (604)
T ss_pred ----c----ccCcccEEEEcccceecC--CCCCH--H-----------------HHHHHHHHHHHHH---HHh--c-CCC
Confidence 0 123468999999763221 10000 0 0011223233221 111 2 799
Q ss_pred EEEEeeccCCCCCCC--C-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCCCC--cCCCceeeec
Q 012262 263 IVVAETGWPYRGDPN--E-VGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGP--AFERSFGLFK 337 (467)
Q Consensus 263 vvVtETGWPS~G~~~--~-~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF~~FDE~wK~g~--~~E~~wGlf~ 337 (467)
++++|.|+.+.-+.. + ..-|.+.|..|++...+.+.+ +|. -+-.||..+||-.+..|. ....+.||++
T Consensus 504 ~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~ 576 (604)
T PRK10150 504 IIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFT 576 (604)
T ss_pred EEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEc
Confidence 999999976632111 1 124688999998877776653 233 456799999996554331 1235789999
Q ss_pred CCCCeeeee
Q 012262 338 PDLSAAYDV 346 (467)
Q Consensus 338 ~d~~~ky~l 346 (467)
.||+||-..
T Consensus 577 ~dr~~k~~~ 585 (604)
T PRK10150 577 RDRQPKSAA 585 (604)
T ss_pred CCCCChHHH
Confidence 999999544
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.29 E-value=8.6e-05 Score=72.90 Aligned_cols=205 Identities=14% Similarity=0.146 Sum_probs=116.6
Q ss_pred cceEEecCCCCCCCChHHHHHHHhhCCCCeEEEecC-------------C-------HHHHHHHHhcCCEEEEeeCCCC-
Q 012262 30 FIGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGA-------------D-------PAIIKALANTGVGIVIGASSGD- 88 (467)
Q Consensus 30 ~~GvnYg~~~~nlp~~~~vv~llk~~~i~~VRiY~~-------------d-------~~vl~A~~~tgi~V~lGv~~~~- 88 (467)
..|+|-. ..+.. ..+++++.++++|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566655 22112 5688999999999999999721 1 2678899999999999998741
Q ss_pred ---cccccCCHHHHHHHHHh---hc-cccCCCCeEEEEEeccceeccCCc-----chHHHHHHHHHHHHHHHHhCCCCCc
Q 012262 89 ---IPALASDPNAATQWINS---NV-LPFYPASKIILITVGNEVMISNDQ-----NLISQLLPAMANMQNALNAASLGGK 156 (467)
Q Consensus 89 ---~~~~a~~~~~a~~Wv~~---~v-~~~~p~~~I~~I~VGNEvl~~~~~-----~~~~~l~~am~~v~~aL~~~gl~~~ 156 (467)
.............|+.+ .| ..|.....|.++=+.||+...... .....+...++.+.+++++.+-..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~- 166 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH- 166 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS-
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc-
Confidence 11111222233333322 22 233233557899999999875311 134678889999999999988764
Q ss_pred eEEEEeeecccccccCCCCCccccccchhhh-HHHHH---HhcCCCceecCCCCCccCCCCCCccccccccCCCCccccC
Q 012262 157 IKVSTVHAMSVLAQSDPPSSGSFIRQDTMRG-ILQFL---KDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDS 232 (467)
Q Consensus 157 IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~-ll~fL---~~~~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~ 232 (467)
+|..... .|... ... ..+ + ....+.+.+|.|+.+....... .
T Consensus 167 -~i~~~~~--~~~~~-------------~~~~~~~-~P~~~~~~~~~~~H~Y~~~~~~~~~~------------~----- 212 (281)
T PF00150_consen 167 -LIIVGGG--GWGAD-------------PDGAAAD-NPNDADNNDVYSFHFYDPYDFSDQWN------------P----- 212 (281)
T ss_dssp -EEEEEEH--HHHTB-------------HHHHHHH-STTTTTTSEEEEEEEETTTCHHTTTS------------T-----
T ss_pred -eeecCCC--ccccc-------------cchhhhc-CcccccCceeEEeeEeCCCCcCCccc------------c-----
Confidence 3333321 01110 001 111 1 1345677777777554322100 0
Q ss_pred CCCccccchHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCC
Q 012262 233 GTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGD 275 (467)
Q Consensus 233 ~~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~ 275 (467)
......+.+...++.....+.+ .++||+|+|.|+++..+
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~---~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 213 -GNWGDASALESSFRAALNWAKK---NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEEEESSTTTS
T ss_pred -ccchhhhHHHHHHHHHHHHHHH---cCCeEEEeCcCCcCCCC
Confidence 0011122334445544444444 35799999999996543
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.53 E-value=0.01 Score=58.56 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=111.6
Q ss_pred HHHHHHHhcCCEEEE--eeCCCCcccccCC------HHHHHHHHHhhccccCCCCeEEEEEeccceeccCCc----chHH
Q 012262 68 AIIKALANTGVGIVI--GASSGDIPALASD------PNAATQWINSNVLPFYPASKIILITVGNEVMISNDQ----NLIS 135 (467)
Q Consensus 68 ~vl~A~~~tgi~V~l--Gv~~~~~~~~a~~------~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~----~~~~ 135 (467)
.+++.+++.||+|-- =+|-...+....+ ..+..+++++.+..| . ..|..+=|.||.+...+. ....
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry-~-g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY-K-GKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh-C-CcceEEEEeeecccCCCcccccchHH
Confidence 456666677777621 1454333322211 234455666666665 3 468999999999865211 1221
Q ss_pred HHH--HHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcC---CCceecCCCCCccC
Q 012262 136 QLL--PAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHG---SPFTINPYPFFAYQ 210 (467)
Q Consensus 136 ~l~--~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~---d~~~vNiyPyf~~~ 210 (467)
..+ .+|+...++.++..= .+++-.-+ +++.. ++. ....+..+++.|.+.+ |-+++..|-+...
T Consensus 98 ~~~G~~~i~~af~~ar~~~P--~a~l~~Nd-y~~~~---~~~-----k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~- 165 (254)
T smart00633 98 QILGEDYIEKAFRYAREADP--DAKLFYND-YNTEE---PNA-----KRQAIYELVKKLKAKGVPIDGIGLQSHLSLGS- 165 (254)
T ss_pred HhcChHHHHHHHHHHHHhCC--CCEEEEec-cCCcC---ccH-----HHHHHHHHHHHHHHCCCccceeeeeeeecCCC-
Confidence 222 334444444444332 35554432 22221 110 0011455666665543 3344433311000
Q ss_pred CCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCCCCCCCCCHHHHHHHH
Q 012262 211 SDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYN 290 (467)
Q Consensus 211 ~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~ 290 (467)
+ + ++.+...|++++-.++||+|||.+-|.. ++.+.|+.++
T Consensus 166 --~--------------------------~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~-------~~~~~qA~~~ 205 (254)
T smart00633 166 --P--------------------------N-----IAEIRAALDRFASLGLEIQITELDISGY-------PNPQAQAADY 205 (254)
T ss_pred --C--------------------------C-----HHHHHHHHHHHHHcCCceEEEEeecCCC-------CcHHHHHHHH
Confidence 0 0 1112233344433479999999998864 2348889999
Q ss_pred HHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCcCCCceeeecCCCCeeee
Q 012262 291 GNLIAHLRSMAGTPLMPGKSVDTYIFALYDE-DLKPGPAFERSFGLFKPDLSAAYD 345 (467)
Q Consensus 291 ~~lv~~~~~~~gTp~rpg~~~~~yiF~~FDE-~wK~g~~~E~~wGlf~~d~~~ky~ 345 (467)
+++++.+.+. | + ...+++..+.|. .|.++ .+-|||+.|++||-.
T Consensus 206 ~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~kpa 250 (254)
T smart00633 206 EEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQPKPA 250 (254)
T ss_pred HHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----CCceeECCCCCCChh
Confidence 9999988763 2 1 233455566653 45543 467999999988843
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.17 E-value=0.015 Score=57.15 Aligned_cols=189 Identities=16% Similarity=0.120 Sum_probs=103.7
Q ss_pred CEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEEEEeccceeccC-CcchHHHHHHHHHHHHHHHHhCCCCCc
Q 012262 78 VGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISN-DQNLISQLLPAMANMQNALNAASLGGK 156 (467)
Q Consensus 78 i~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~-~~~~~~~l~~am~~v~~aL~~~gl~~~ 156 (467)
++-+-.+|.....+ ..|+. +|... ...++.|..=||+=... ...++++.+...+++.+.|+. ..
T Consensus 39 ~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~ 103 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PG 103 (239)
T ss_pred eeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CC
Confidence 67777777643221 12222 12222 24678899999975442 245667777777776666663 24
Q ss_pred eEEEEeeecccccccCCCCCccccccch-hhhHHHHHH--hcCCCceecCCCCCccCCCCCCccccccccCCCCccccCC
Q 012262 157 IKVSTVHAMSVLAQSDPPSSGSFIRQDT-MRGILQFLK--DHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSG 233 (467)
Q Consensus 157 IkVsT~~~~~~l~~s~pPS~g~F~~~~~-~~~ll~fL~--~~~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~ 233 (467)
++++.+..-.. +..+|+. .. +++.++-.. +..|++.||.| ..+.
T Consensus 104 ~~l~sPa~~~~--~~~~~~g------~~Wl~~F~~~~~~~~~~D~iavH~Y-----~~~~-------------------- 150 (239)
T PF11790_consen 104 VKLGSPAVAFT--NGGTPGG------LDWLSQFLSACARGCRVDFIAVHWY-----GGDA-------------------- 150 (239)
T ss_pred cEEECCeeccc--CCCCCCc------cHHHHHHHHhcccCCCccEEEEecC-----CcCH--------------------
Confidence 77776643110 0000111 11 444433222 35688887777 1100
Q ss_pred CCccccchHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccE
Q 012262 234 TGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDT 313 (467)
Q Consensus 234 ~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~ 313 (467)
.-|...++. ..++.| +||+|||.|+...+ ...+.+.++.|.+..+..+.+. +. --.+
T Consensus 151 ------~~~~~~i~~---~~~~~~---kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~-Very 207 (239)
T PF11790_consen 151 ------DDFKDYIDD---LHNRYG---KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY-VERY 207 (239)
T ss_pred ------HHHHHHHHH---HHHHhC---CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeEE
Confidence 012223333 334433 99999999987622 2378899999999999988652 22 3446
Q ss_pred EEEEeecCCCCCCCcCCCceeeecCCCC
Q 012262 314 YIFALYDEDLKPGPAFERSFGLFKPDLS 341 (467)
Q Consensus 314 yiF~~FDE~wK~g~~~E~~wGlf~~d~~ 341 (467)
++|. |-..+. ....+-.|++.+|+
T Consensus 208 awF~-~~~~~~---~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 208 AWFG-FMNDGS---GVNPNSALLDADGS 231 (239)
T ss_pred Eecc-cccccC---CCccccccccCCCC
Confidence 6777 322222 33455667777764
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.93 E-value=0.053 Score=54.63 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=56.3
Q ss_pred cceEEecCCCCCC---CCh---HHHHHHHhhCCCCeEEEec--CCHHHHHHHHhcCCEEEEeeCCCCc---ccc------
Q 012262 30 FIGVNYGQVADNL---PPP---AATAKLLQSTSIQKLRLYG--ADPAIIKALANTGVGIVIGASSGDI---PAL------ 92 (467)
Q Consensus 30 ~~GvnYg~~~~nl---p~~---~~vv~llk~~~i~~VRiY~--~d~~vl~A~~~tgi~V~lGv~~~~~---~~~------ 92 (467)
..|||+......+ .++ .++++++|++|++.||+.. .++..+.++-..||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 4699988653322 233 4578899999999999964 3479999999999999988876211 101
Q ss_pred cCCH---HHHHHHHHhhccccCCCCeEEEEEeccce
Q 012262 93 ASDP---NAATQWINSNVLPFYPASKIILITVGNEV 125 (467)
Q Consensus 93 a~~~---~~a~~Wv~~~v~~~~p~~~I~~I~VGNEv 125 (467)
..++ +...+.+++.|..+...-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1122 22233345555554322347888899998
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=96.48 E-value=0.41 Score=51.08 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCCeEEEe-------c-----CC-------HHHHHHHHhcCCEEEEeeCCCCc
Q 012262 46 AATAKLLQSTSIQKLRLY-------G-----AD-------PAIIKALANTGVGIVIGASSGDI 89 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY-------~-----~d-------~~vl~A~~~tgi~V~lGv~~~~~ 89 (467)
++++++|+++|++.+|+= - .| ..++..+.+.||+++|.+.--++
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 689999999999999862 1 12 36889999999999999964443
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.92 E-value=0.68 Score=54.73 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=59.3
Q ss_pred cceEEecCCCCC---CCCh---HHHHHHHhhCCCCeEEEec--CCHHHHHHHHhcCCEEEEeeCCCCc--------cccc
Q 012262 30 FIGVNYGQVADN---LPPP---AATAKLLQSTSIQKLRLYG--ADPAIIKALANTGVGIVIGASSGDI--------PALA 93 (467)
Q Consensus 30 ~~GvnYg~~~~n---lp~~---~~vv~llk~~~i~~VRiY~--~d~~vl~A~~~tgi~V~lGv~~~~~--------~~~a 93 (467)
..|+|+-..... -.++ .++++++|+.|++.||+-. .++..+.++-+.||-|+--+..+.. ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 458886433211 1223 4578899999999999864 2368899999999999986532210 1122
Q ss_pred CCHH---HHHHHHHhhccccCCCCeEEEEEeccceec
Q 012262 94 SDPN---AATQWINSNVLPFYPASKIILITVGNEVMI 127 (467)
Q Consensus 94 ~~~~---~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~ 127 (467)
.++. +..+-+++.|......-.|..-++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 2221 112224455555433345888889999743
No 15
>PLN02998 beta-glucosidase
Probab=94.39 E-value=7.2 Score=42.55 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCeEEE-------ec-----CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG-----AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~-----~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|+++++++|++.-|+ += .| .+++.++.+.||+-+|.+.--+++
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP 148 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLP 148 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 68999999999887775 21 23 378999999999999999876654
No 16
>PLN02814 beta-glucosidase
Probab=94.23 E-value=8.7 Score=42.01 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=35.9
Q ss_pred HHHHHHHhhCCCCeEEE-------ec-----CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG-----AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~-----~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|++|+|++|++.-|. += .| .+++.++.+.||+-+|.+.--+++
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 68999999999877764 31 13 378999999999999999876655
No 17
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=90.17 E-value=1.5 Score=45.09 Aligned_cols=193 Identities=17% Similarity=0.187 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCC-----CCeEEEEEeccceeccC--CcchHHHHHHH
Q 012262 68 AIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYP-----ASKIILITVGNEVMISN--DQNLISQLLPA 140 (467)
Q Consensus 68 ~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p-----~~~I~~I~VGNEvl~~~--~~~~~~~l~~a 140 (467)
++.+-++.+|++|+.|+-.-.-..........-.|--+|...++. .-+|.+-=.|||.-..+ ...++.++...
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 444556689999999997421111001113346788888655431 23577888999965432 13457778888
Q ss_pred HHHHHHHHHhC---CCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHh-cCCCceecCCCCCccCCCCCCc
Q 012262 141 MANMQNALNAA---SLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKD-HGSPFTINPYPFFAYQSDPRPE 216 (467)
Q Consensus 141 m~~v~~aL~~~---gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~-~~d~~~vNiyPyf~~~~~~~~~ 216 (467)
...+|+.|+.. .+. .-+|.-|...- .. +-+++.|+-... ..|.+.-|+|+ +....++
T Consensus 193 ~~~Lr~il~~iy~~~~~-~P~v~gP~~~~--d~------------~w~~~FL~~~g~~~vD~vT~H~Y~-lg~g~d~--- 253 (319)
T PF03662_consen 193 FIQLRKILNEIYKNALP-GPLVVGPGGFF--DA------------DWLKEFLKASGPGVVDAVTWHHYN-LGSGRDP--- 253 (319)
T ss_dssp H---HHHHHHHHHH-TT----EEEEEESS---G------------GGHHHHHHHTTTT--SEEEEEEEE-E--TT-T---
T ss_pred HHHHHHHHHHHHhcCCC-CCeEECCCCCC--CH------------HHHHHHHHhcCCCccCEEEEEecC-CCCCchH---
Confidence 88888877652 111 12455554321 00 114444443334 36899999995 3322221
Q ss_pred cccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCCCCCCCCCHHHHHHHHH
Q 012262 217 TLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNG 291 (467)
Q Consensus 217 ~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~na~~y~~ 291 (467)
.+-. .+.++ .|-+-+..++..+...+++.+ ++++++|+|||=...|+..+..-+-.+.-.|++
T Consensus 254 ~l~~-------~~l~p----~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLD 316 (319)
T PF03662_consen 254 ALIE-------DFLNP----SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLD 316 (319)
T ss_dssp T-HH-------HHTS------HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT--TTTTTSTHHHHHHHH
T ss_pred HHHH-------HhcCh----hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCCCCCccHHHHHHHHHHH
Confidence 1100 11122 122223333333433333333 689999999996666655433333333334433
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=88.45 E-value=1.1 Score=46.66 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCCeEEEecCC----------------HHHHHHHHhcCCEEEEeeCCCCcc--------cc---------
Q 012262 46 AATAKLLQSTSIQKLRLYGAD----------------PAIIKALANTGVGIVIGASSGDIP--------AL--------- 92 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~d----------------~~vl~A~~~tgi~V~lGv~~~~~~--------~~--------- 92 (467)
+++++++|+.||+.|||.... ..+|..+++.||+|+|+++....+ .+
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 678999999999999984321 368888999999999999753211 10
Q ss_pred ---cC-------C---HHHHHHHHHhhccccCCCCeEEEEEeccceec
Q 012262 93 ---AS-------D---PNAATQWINSNVLPFYPASKIILITVGNEVMI 127 (467)
Q Consensus 93 ---a~-------~---~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~ 127 (467)
.. + ...+.+.++..+..|-..-.|.++.|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 00 0 12345555554555544457999999999754
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=86.56 E-value=28 Score=37.76 Aligned_cols=247 Identities=15% Similarity=0.170 Sum_probs=112.1
Q ss_pred HHhhCCCCeEEEecC---C--------------------HHHHHHHHhcCCEEEEeeCCCCccccc--------------
Q 012262 51 LLQSTSIQKLRLYGA---D--------------------PAIIKALANTGVGIVIGASSGDIPALA-------------- 93 (467)
Q Consensus 51 llk~~~i~~VRiY~~---d--------------------~~vl~A~~~tgi~V~lGv~~~~~~~~a-------------- 93 (467)
+.+..||+.||+... | ..++..+.+.||+.+|-+.-.. ..++
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p-~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMP-MALASGYQTVFWYKGNIS 126 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTTEE-S
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEech-hhhcCCCCccccccCCcC
Confidence 334678999998732 1 3688999999999877664211 1111
Q ss_pred --CCHHHHH----HHHHhhccccCCCCeEE--EEEeccceecc--CCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEee
Q 012262 94 --SDPNAAT----QWINSNVLPFYPASKII--LITVGNEVMIS--NDQNLISQLLPAMANMQNALNAASLGGKIKVSTVH 163 (467)
Q Consensus 94 --~~~~~a~----~Wv~~~v~~~~p~~~I~--~I~VGNEvl~~--~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~ 163 (467)
.+...-. ++++..+..| +...|. .+=|=||.=.. +...+..+-....+.+.++|++.. ..++|+-+-
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~ 203 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPA 203 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCcc
Confidence 1222222 2223223232 111111 45578885332 112334456677777778888764 358899772
Q ss_pred e-cccccccCCCCCccccccchhhhHHHHHHhc---CCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCcccc
Q 012262 164 A-MSVLAQSDPPSSGSFIRQDTMRGILQFLKDH---GSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYM 239 (467)
Q Consensus 164 ~-~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~---~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~ 239 (467)
. +... .-+...++|..+. .||+..|.||+-...... ......-. ...
T Consensus 204 ~~~~~~--------------~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~-------------~~~~~~~~--~~~ 254 (486)
T PF01229_consen 204 FAWAYD--------------EWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN-------------ENMYERIE--DSR 254 (486)
T ss_dssp EETT-T--------------HHHHHHHHHHHHCT---SEEEEEEE-BESESE-S-------------S-EEEEB----HH
T ss_pred ccccHH--------------HHHHHHHHHHhcCCCCCCEEEEEecccccccccc-------------hhHHhhhh--hHH
Confidence 1 1100 1155677776653 499999999853211100 00000000 011
Q ss_pred chHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEE--
Q 012262 240 NMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEV-GPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIF-- 316 (467)
Q Consensus 240 n~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~~~~~-~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF-- 316 (467)
.+++. +.-+...+...+.+++++.++| |.+.-..... --|.-+|+-..++++..... .++.|-|
T Consensus 255 ~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt 321 (486)
T PF01229_consen 255 RLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWT 321 (486)
T ss_dssp HHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-
T ss_pred HHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccc
Confidence 12222 2222234455678899999999 7765443221 14556666655656655421 2333211
Q ss_pred --EeecCCCCCCCcCCCceeeecCCCCee
Q 012262 317 --ALYDEDLKPGPAFERSFGLFKPDLSAA 343 (467)
Q Consensus 317 --~~FDE~wK~g~~~E~~wGlf~~d~~~k 343 (467)
..|.|.--+...+-.-|||++.+|-+|
T Consensus 322 ~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 322 FSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hhhhhhccCCCCCceecchhhhhccCCCc
Confidence 234443332224556699999998655
No 20
>PRK09936 hypothetical protein; Provisional
Probab=85.66 E-value=5 Score=40.57 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=42.5
Q ss_pred ceEEecCCCCCC-CCh---HHHHHHHhhCCCCeEEE-e----cCC--------HHHHHHHHhcCCEEEEeeCCCC
Q 012262 31 IGVNYGQVADNL-PPP---AATAKLLQSTSIQKLRL-Y----GAD--------PAIIKALANTGVGIVIGASSGD 88 (467)
Q Consensus 31 ~GvnYg~~~~nl-p~~---~~vv~llk~~~i~~VRi-Y----~~d--------~~vl~A~~~tgi~V~lGv~~~~ 88 (467)
.|+=|-|...|. -++ ++..+.++..|++.+=+ | +.| ...|+++.+.||+|.||++-|.
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 466699998773 344 45677888889876543 2 223 4788999999999999999864
No 21
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.37 E-value=8 Score=40.28 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=76.8
Q ss_pred CCCeEEEec-CCHHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchH
Q 012262 56 SIQKLRLYG-ADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLI 134 (467)
Q Consensus 56 ~i~~VRiY~-~d~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~ 134 (467)
.++.|-+|+ .|++++..+...|++|++..-.. .+.+ .+++.-.+|+++-| .+...-...+|-+==|-....+....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 367888885 46899999999999999864322 2223 34444444544432 22222234555554443322112234
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 135 SQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 135 ~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
..+..-|+++|++|++.+.. ..|+.+..+. |+....+. -.++ -|.+..|++.|-.|=|..
T Consensus 132 ~~~t~llkelr~~l~~~~~~--~~Lsvav~~~-------p~~~~~~~-yd~~----~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 132 YALTELVKETTKAFKKENPG--YQISFDVAWS-------PSCIDKRC-YDYT----GIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC--cEEEEEEecC-------cccccccc-cCHH----HHHhhCCEeeEEeecccC
Confidence 67889999999999987643 2344443321 11111110 0123 345678999999998754
No 22
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=80.09 E-value=5.8 Score=42.72 Aligned_cols=186 Identities=15% Similarity=0.136 Sum_probs=101.4
Q ss_pred HHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccc
Q 012262 100 TQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSF 179 (467)
Q Consensus 100 ~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F 179 (467)
.+.|...|.+|--...|.+-..-||.+.+. +.+...++...+.+.++|+..+-..-|.|+ +...-|..--||+ +.
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~-p~s~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~~~pyN-~r- 197 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEA-PISVNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQYAPYN-AR- 197 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccc-cCChhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccccCCcc-cc-
Confidence 345666677775556688888899977763 567778888999999999887765434444 3332233211221 21
Q ss_pred cccchhhhHHHHHHhcCCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCC
Q 012262 180 IRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFK 259 (467)
Q Consensus 180 ~~~~~~~~ll~fL~~~~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~ 259 (467)
.++||-+-|+||+|... + -....+..+.+ |-+.+ ..+ +
T Consensus 198 --------------~~vDya~~hLY~hyd~s--l-~~r~s~~yg~~------------~l~i~-----------~~~--g 235 (587)
T COG3934 198 --------------FYVDYAANHLYRHYDTS--L-VSRVSTVYGKP------------YLDIP-----------TIM--G 235 (587)
T ss_pred --------------eeeccccchhhhhccCC--h-hheeeeeecch------------hhccc-----------hhc--c
Confidence 26788899999977643 2 01111111110 11100 112 2
Q ss_pred CceEEEEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCC--CCCCC--cCCCceee
Q 012262 260 DVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDED--LKPGP--AFERSFGL 335 (467)
Q Consensus 260 ~~~vvVtETGWPS~G~~~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF~~FDE~--wK~g~--~~E~~wGl 335 (467)
-+||+.-|.|-|++=+.. |.+.|.- ++..+....| .+--..-|+=|-+- -.|+. .-|-.|||
T Consensus 236 ~~pV~leefGfsta~g~e-------~s~ayfi-w~~lal~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~fgi 301 (587)
T COG3934 236 WQPVNLEEFGFSTAFGQE-------NSPAYFI-WIRLALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEFGI 301 (587)
T ss_pred cceeeccccCCccccccc-------ccchhhh-hhhhHHhhcC------CceEEEEecCCccCCCCCCCccccccceeee
Confidence 489999999999874432 2222211 1122222111 11223333433311 11111 34778999
Q ss_pred ecCCCCeeeee
Q 012262 336 FKPDLSAAYDV 346 (467)
Q Consensus 336 f~~d~~~ky~l 346 (467)
.+.|+.+|+..
T Consensus 302 Iradgpek~~a 312 (587)
T COG3934 302 IRADGPEKIDA 312 (587)
T ss_pred ecCCCchhhhH
Confidence 99999999865
No 23
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=79.82 E-value=1.3 Score=47.58 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=66.8
Q ss_pred HHHHHHHhhCCCCeEEEe--------c-----CC-------HHHHHHHHhcCCEEEEeeCCCCccc-cc-----CCHHHH
Q 012262 46 AATAKLLQSTSIQKLRLY--------G-----AD-------PAIIKALANTGVGIVIGASSGDIPA-LA-----SDPNAA 99 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY--------~-----~d-------~~vl~A~~~tgi~V~lGv~~~~~~~-~a-----~~~~~a 99 (467)
++|+++||++|++..|+= + .| .+++..|...||+.+|.+.--+++. +. .+...
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~- 139 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET- 139 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH-
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH-
Confidence 789999999999999874 1 12 3788999999999999998655543 11 01111
Q ss_pred HHHHHhh----ccccCCCCeEEEEEeccceeccC-----------Ccc-------hHHHHHHHHHHHHHHHHhCCCCCce
Q 012262 100 TQWINSN----VLPFYPASKIILITVGNEVMISN-----------DQN-------LISQLLPAMANMQNALNAASLGGKI 157 (467)
Q Consensus 100 ~~Wv~~~----v~~~~p~~~I~~I~VGNEvl~~~-----------~~~-------~~~~l~~am~~v~~aL~~~gl~~~I 157 (467)
..|..+- +..| .+.|+.-+.=||...-. +.. ..-.++-|-..+.+++++..-. .
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--G 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--S
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--e
Confidence 1121111 1122 35688888889975420 001 1223555555666667766643 5
Q ss_pred EEEEeeecc
Q 012262 158 KVSTVHAMS 166 (467)
Q Consensus 158 kVsT~~~~~ 166 (467)
+|+.+.+..
T Consensus 216 ~IGi~~~~~ 224 (455)
T PF00232_consen 216 KIGIALNFS 224 (455)
T ss_dssp EEEEEEEEE
T ss_pred EEecccccc
Confidence 777766654
No 24
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=74.88 E-value=1.3e+02 Score=32.67 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=35.8
Q ss_pred HHHHHHHhhCCCCeEEE-------ec------CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG------AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|++||+++|++..|+ +- .| ..++.+|.+.||+-+|.+.--+++
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 78999999999887764 31 13 368899999999999999876555
No 25
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=73.53 E-value=16 Score=43.55 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=59.9
Q ss_pred cceEEecCCCCC---CCCh---HHHHHHHhhCCCCeEEEec--CCHHHHHHHHhcCCEEEEeeCCCCc-----ccccCCH
Q 012262 30 FIGVNYGQVADN---LPPP---AATAKLLQSTSIQKLRLYG--ADPAIIKALANTGVGIVIGASSGDI-----PALASDP 96 (467)
Q Consensus 30 ~~GvnYg~~~~n---lp~~---~~vv~llk~~~i~~VRiY~--~d~~vl~A~~~tgi~V~lGv~~~~~-----~~~a~~~ 96 (467)
..|+|+-..... -.++ .++++++|++|++.||+-. .++..+..+-..||-|+--++.+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 457887543221 1233 4578899999999999943 3578999999999999988654210 1122222
Q ss_pred H---HHHHHHHhhccccCCCCeEEEEEecccee
Q 012262 97 N---AATQWINSNVLPFYPASKIILITVGNEVM 126 (467)
Q Consensus 97 ~---~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl 126 (467)
. +..+-+++.|......-.|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 2 12222344454443334588899999963
No 26
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=67.73 E-value=8 Score=35.95 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=27.5
Q ss_pred HHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeC
Q 012262 48 TAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGAS 85 (467)
Q Consensus 48 vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~ 85 (467)
-.++|+.+|+++||+.+.+|.-+.++.+.||+|.=-|+
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 47799999999999999999999999999999975443
No 27
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=62.30 E-value=31 Score=37.30 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCCeEEE-------ec-----CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG-----AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~-----~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|++|++++|++..|. += .| .+++.+|.+.||+-+|.+.--+++
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 78999999999887775 21 13 378999999999999999876655
No 28
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=61.66 E-value=13 Score=35.28 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=30.6
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEE
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIV 81 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~ 81 (467)
.|+|+.+|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999888889999999987
No 29
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=61.28 E-value=13 Score=35.44 Aligned_cols=33 Identities=33% Similarity=0.666 Sum_probs=30.8
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEE
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIV 81 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~ 81 (467)
.|+|+.+||++||+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999888889999999997
No 30
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=61.14 E-value=31 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=35.6
Q ss_pred CChHHHHHHHhhCCCCeEEEecCC-----HHHHHHHHhcCCEEEEeeCC
Q 012262 43 PPPAATAKLLQSTSIQKLRLYGAD-----PAIIKALANTGVGIVIGASS 86 (467)
Q Consensus 43 p~~~~vv~llk~~~i~~VRiY~~d-----~~vl~A~~~tgi~V~lGv~~ 86 (467)
-++++.++..+++|++.|=+=|-+ +...+.++..||+|+.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 357888999999999998887766 45667777899999999864
No 31
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=60.98 E-value=34 Score=31.85 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=47.0
Q ss_pred HHHHHHHhc--CCEEEEeeCCCCccc---ccCCHHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHH
Q 012262 68 AIIKALANT--GVGIVIGASSGDIPA---LASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMA 142 (467)
Q Consensus 68 ~vl~A~~~t--gi~V~lGv~~~~~~~---~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~ 142 (467)
..++.++.. |++|++.|....... +..+....++.++ ++..+....++.+|-+==|-....+......++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 446666665 999999998743222 3445444333322 2232222224555555334332211113567999999
Q ss_pred HHHHHHHhCCC
Q 012262 143 NMQNALNAASL 153 (467)
Q Consensus 143 ~v~~aL~~~gl 153 (467)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977644
No 32
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=56.37 E-value=18 Score=36.48 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=53.3
Q ss_pred CeEEEEEeccceec--c--CC---cchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCc----ccccc
Q 012262 114 SKIILITVGNEVMI--S--ND---QNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSG----SFIRQ 182 (467)
Q Consensus 114 ~~I~~I~VGNEvl~--~--~~---~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g----~F~~~ 182 (467)
..|..++||.|..- + .+ --.+..|..-+.+||+.| | ..+|||++..|+.+.. +.|..| .|.
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~-- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFH-- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCccccc--
Confidence 56899999999642 2 11 123467888888888877 3 2479999999987764 344444 343
Q ss_pred chhhhHHHHHHhcCCCceecCCC
Q 012262 183 DTMRGILQFLKDHGSPFTINPYP 205 (467)
Q Consensus 183 ~~~~~ll~fL~~~~d~~~vNiyP 205 (467)
|.||.. ....||++|+.|.
T Consensus 90 --LDpLWa--~~~IDfIGID~Y~ 108 (299)
T PF13547_consen 90 --LDPLWA--DPNIDFIGIDNYF 108 (299)
T ss_pred --Cccccc--CCcCCEEEeeccc
Confidence 445431 3467999999885
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=54.68 E-value=93 Score=28.78 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHHHHhhCCCCeEEE----------ecC------------C--HHHHHHHHhcCCEEEEeeCCCCc-ccccCCHHHHH
Q 012262 46 AATAKLLQSTSIQKLRL----------YGA------------D--PAIIKALANTGVGIVIGASSGDI-PALASDPNAAT 100 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi----------Y~~------------d--~~vl~A~~~tgi~V~lGv~~~~~-~~~a~~~~~a~ 100 (467)
.+.++.+|..||+.|=+ |.+ | ..+|+++.+.||+|.+|++.+.. -. ..+.+...
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~ 101 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEA 101 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHH
Confidence 46788899999877622 111 1 36789999999999999997521 11 12211110
Q ss_pred ---HHHHhhcc-ccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhC
Q 012262 101 ---QWINSNVL-PFYPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAA 151 (467)
Q Consensus 101 ---~Wv~~~v~-~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~ 151 (467)
.-|.+.+. .|.....+.+--+-.|+=... ....++.+.+.+.|+..
T Consensus 102 ~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 102 ERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEecccCCcc-----cchHHHHHHHHHHHHHh
Confidence 01111121 221122466666777764331 22355666666666654
No 34
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=53.99 E-value=47 Score=33.52 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCEEEEeeCCCC--------cccccCCHHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHH
Q 012262 67 PAIIKALANTGVGIVIGASSGD--------IPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLL 138 (467)
Q Consensus 67 ~~vl~A~~~tgi~V~lGv~~~~--------~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~ 138 (467)
+.++.++++.++||++.|.+.. ...+.+++..-.+++ ++|..+...-.+.+|-+-=|.+. .......+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~---~~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVP---PEDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCC---HHHHHHHH
Confidence 6888888888999999987642 123344443222332 23333222223456665545542 23456688
Q ss_pred HHHHHHHHHHHhCCC
Q 012262 139 PAMANMQNALNAASL 153 (467)
Q Consensus 139 ~am~~v~~aL~~~gl 153 (467)
.-|+.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987664
No 35
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.60 E-value=49 Score=34.73 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 012262 238 YMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNE---VGPSVENAKAYNGNLIAHLRS 299 (467)
Q Consensus 238 y~n~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~na~~y~~~lv~~~~~ 299 (467)
|.|-|++-+-....-.-..|++.++|+.+ |||.|.-.+ .-.|-..++.-+.++++.+..
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 66777755443333334567788999987 999997642 125555566667777777664
No 36
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=53.24 E-value=28 Score=37.85 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCeEEE-------ec------CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG------AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|++||+++|++.-|+ += .| .+++.+|.+.||+-+|.+.--+++
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 78999999999877764 31 23 378999999999999999876655
No 37
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=53.15 E-value=1.1e+02 Score=32.31 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCcc
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAY 209 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~~ 209 (467)
.+..++..+++.+|+.. .| +.|++..-. .+| .. + .+.+...++|+.+. .+-.+++|||--.
T Consensus 270 ~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P-gE-T---~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 270 YTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP-GE-S---EEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred CCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC-CC-C---HHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 45567778888777642 22 445544322 132 11 0 12377888888754 3556677776444
No 38
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=52.18 E-value=17 Score=38.21 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=30.0
Q ss_pred HHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEE
Q 012262 48 TAKLLQSTSIQKLRLYGADPAIIKALANTGVGIV 81 (467)
Q Consensus 48 vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~ 81 (467)
-.++|+.+||++||+. .+|.=+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3789999999999999 78888899999999997
No 39
>PLN02849 beta-glucosidase
Probab=52.03 E-value=55 Score=35.88 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=35.8
Q ss_pred HHHHHHHhhCCCCeEEE-------ec-----CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG-----AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~-----~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|++||+++|++.-|. +- .| .+++.++.+.||+-+|.+.--+++
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 68999999999887764 31 13 378999999999999999876554
No 40
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=51.26 E-value=24 Score=33.47 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=31.7
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEee
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGA 84 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv 84 (467)
.|+|+.+|+.++|+.+..+.-+.++.+.||+|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 779999999999999998878889999999998333
No 41
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=49.19 E-value=20 Score=37.57 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=31.2
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEee
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGA 84 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv 84 (467)
.++|+.+||++||+.. +|.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999999 8988999999999997433
No 42
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=45.84 E-value=27 Score=36.27 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=31.1
Q ss_pred HHHHHhhCCCCeEEEecCC-HHHHHHHHhcCCEEE
Q 012262 48 TAKLLQSTSIQKLRLYGAD-PAIIKALANTGVGIV 81 (467)
Q Consensus 48 vv~llk~~~i~~VRiY~~d-~~vl~A~~~tgi~V~ 81 (467)
..++|+.+|+++||+...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999999 888889999999986
No 43
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=45.67 E-value=30 Score=36.65 Aligned_cols=38 Identities=29% Similarity=0.446 Sum_probs=33.7
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeCC
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASS 86 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~~ 86 (467)
.++|+.+|+++||+.+.+|.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999999999999999999855443
No 44
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=45.64 E-value=2.8e+02 Score=29.44 Aligned_cols=96 Identities=20% Similarity=0.109 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCEEEEeeCCCCccc----------------ccCC-HHHHHHHHHhhccccC-CCCeEEEEEeccceeccC
Q 012262 68 AIIKALANTGVGIVIGASSGDIPA----------------LASD-PNAATQWINSNVLPFY-PASKIILITVGNEVMISN 129 (467)
Q Consensus 68 ~vl~A~~~tgi~V~lGv~~~~~~~----------------~a~~-~~~a~~Wv~~~v~~~~-p~~~I~~I~VGNEvl~~~ 129 (467)
..|+++++.|+..+++..|+..-- |..+ ..+-..-+.+-++.|- -+.+|++|.-=||+-..+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 578999999999999988863110 1111 1111112222121110 147899999999998764
Q ss_pred C-------cchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeec
Q 012262 130 D-------QNLISQLLPAMANMQNALNAASLGGKIKVSTVHAM 165 (467)
Q Consensus 130 ~-------~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~ 165 (467)
. ..+..+....|+.++++|++.||.. +|..+++.
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea~ 228 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEAG 228 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEES
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecchh
Confidence 1 1246778899999999999999975 45555553
No 45
>PRK08815 GTP cyclohydrolase; Provisional
Probab=45.41 E-value=30 Score=36.48 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.9
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeC
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGAS 85 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~ 85 (467)
.|+|+.+|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888999999999984444
No 46
>PLN03059 beta-galactosidase; Provisional
Probab=45.23 E-value=2.5e+02 Score=32.89 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=72.5
Q ss_pred HHHHHHHhhCCCCeEEEecC-----------C-------HHHHHHHHhcCCEEEEee---------------CCCCccc-
Q 012262 46 AATAKLLQSTSIQKLRLYGA-----------D-------PAIIKALANTGVGIVIGA---------------SSGDIPA- 91 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~-----------d-------~~vl~A~~~tgi~V~lGv---------------~~~~~~~- 91 (467)
.+.++.+|..|++.|-+|-. | ..-|+.+++.||.|+|=. |.-..+.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i 141 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGI 141 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCc
Confidence 45788999999999999831 1 356788889999999843 2211111
Q ss_pred -cc-CCH---HHHHHHHHhhcc-----cc--CCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCCCceEE
Q 012262 92 -LA-SDP---NAATQWINSNVL-----PF--YPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLGGKIKV 159 (467)
Q Consensus 92 -~a-~~~---~~a~~Wv~~~v~-----~~--~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~~~IkV 159 (467)
+. .++ ++.++|+..-+. ++ -.+-.|..+=|=||-=.-. ......-..+|+.+++.+++.|+. ||.
T Consensus 142 ~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~-~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl 218 (840)
T PLN03059 142 EFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVE-WEIGAPGKAYTKWAADMAVKLGTG--VPW 218 (840)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccccee-cccCcchHHHHHHHHHHHHHcCCC--cce
Confidence 11 122 355666554322 11 1235799999999952210 001112367999999999999984 777
Q ss_pred EEeee
Q 012262 160 STVHA 164 (467)
Q Consensus 160 sT~~~ 164 (467)
-|.+.
T Consensus 219 ~t~dg 223 (840)
T PLN03059 219 VMCKQ 223 (840)
T ss_pred EECCC
Confidence 77654
No 47
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=44.31 E-value=38 Score=36.84 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCCeEEE-------ec------CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG------AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|++||+++|++..|+ +- .| ..++.++.+.||+.+|.+.=-+++
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 78999999998877664 31 23 378999999999999999654443
No 48
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=44.19 E-value=31 Score=37.26 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=32.8
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeC
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGAS 85 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~ 85 (467)
.++|+.+||++||+...+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7799999999999999999989999999999974443
No 49
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=44.02 E-value=37 Score=34.73 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=31.2
Q ss_pred HHHH-HHhhCCCCeEEEecCC-HHHHHHHHhcCCEEEEeeCCCCc
Q 012262 47 ATAK-LLQSTSIQKLRLYGAD-PAIIKALANTGVGIVIGASSGDI 89 (467)
Q Consensus 47 ~vv~-llk~~~i~~VRiY~~d-~~vl~A~~~tgi~V~lGv~~~~~ 89 (467)
.+++ .|+.+|.+. .+-..| .-..+++++-.+.++++.|.+..
T Consensus 48 ~v~~~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~~ 91 (302)
T COG2113 48 NVAKKILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPTT 91 (302)
T ss_pred HHHHHHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCCC
Confidence 3444 678899655 666677 45568899889999999998644
No 50
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=43.89 E-value=32 Score=36.61 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.1
Q ss_pred HHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeC
Q 012262 48 TAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGAS 85 (467)
Q Consensus 48 vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~ 85 (467)
..++|+.+|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 37799999999999999999888999999999984443
No 51
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=43.41 E-value=1.7e+02 Score=31.06 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=60.2
Q ss_pred HHHHHHHhhCCCCeEEEecC----------CH------------HHHHHHHhcCCEEEEeeCCCC-------c----ccc
Q 012262 46 AATAKLLQSTSIQKLRLYGA----------DP------------AIIKALANTGVGIVIGASSGD-------I----PAL 92 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~----------d~------------~vl~A~~~tgi~V~lGv~~~~-------~----~~~ 92 (467)
+++...+++.||+.|||.-. +| ++++.+.+.||+|++.+-.-. . ...
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56788999999999999732 21 456777889999999855422 0 011
Q ss_pred cCC----HHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHH-HHHHHHHHHHHHhC
Q 012262 93 ASD----PNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQL-LPAMANMQNALNAA 151 (467)
Q Consensus 93 a~~----~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l-~~am~~v~~aL~~~ 151 (467)
..+ ......| +.-...|-....|.+|-+=||+..-..+..+..- -+|..-|++.+...
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 110 1122223 1112233335677888888999841011223333 47777776555543
No 52
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=43.33 E-value=33 Score=37.90 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=34.3
Q ss_pred HHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeCC
Q 012262 48 TAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASS 86 (467)
Q Consensus 48 vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~~ 86 (467)
..++|+.+||++||+...+|.=+.++.+.||+|.=-++.
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 377999999999999999999999999999999855543
No 53
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=42.43 E-value=46 Score=36.50 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=49.8
Q ss_pred cCCCCceEEEEeeccCCCCCCC---C----CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCC
Q 012262 256 MGFKDVEIVVAETGWPYRGDPN---E----VGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDE-DLKPGP 327 (467)
Q Consensus 256 ~g~~~~~vvVtETGWPS~G~~~---~----~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF~~FDE-~wK~g~ 327 (467)
-.|+|.+|.|+|-|-+...+.. + ...=++..+.|++.+.+.+.. .|- ....+|+.++-|- .|..|
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G- 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG- 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC-
Confidence 3478999999999998765432 1 113345566777777777653 121 1235788898873 45554
Q ss_pred cCCCceeeecCC
Q 012262 328 AFERSFGLFKPD 339 (467)
Q Consensus 328 ~~E~~wGlf~~d 339 (467)
..-.|||++.|
T Consensus 476 -y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 -YKVRFGLYYVD 486 (524)
T ss_pred -cccccccEEEe
Confidence 66889999853
No 54
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=41.51 E-value=76 Score=30.89 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=25.8
Q ss_pred HHcCCCCceEEEEeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 012262 254 NAMGFKDVEIVVAETGWPYRGDPNE---VGPSVENAKAYNGNLIAHLRS 299 (467)
Q Consensus 254 ~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~na~~y~~~lv~~~~~ 299 (467)
..+++++++|+. .|||.|...+ ...+....+..+.++++.+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 456777766665 5999997543 123444455555666666654
No 55
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=40.11 E-value=63 Score=28.55 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=36.7
Q ss_pred HHHHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeC
Q 012262 46 AATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGAS 85 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~ 85 (467)
.++.++|+.+|++.|=+-..-+..+.+|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4689999999999999988889999999999999999977
No 56
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=39.26 E-value=1.4e+02 Score=29.21 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCEEEEeeCCCCcc---cccCCHHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHH
Q 012262 68 AIIKALANTGVGIVIGASSGDIP---ALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMANM 144 (467)
Q Consensus 68 ~vl~A~~~tgi~V~lGv~~~~~~---~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v 144 (467)
..+++++..|+||++.|...... .+..++....+++++ |..+.....+.+|-+==|-... ........|+++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~----~~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV----TFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc----cHhHHHHHHHHH
Confidence 45677777899999988764322 233454444444433 3222221234455554444321 135577889999
Q ss_pred HHHHHhCCC
Q 012262 145 QNALNAASL 153 (467)
Q Consensus 145 ~~aL~~~gl 153 (467)
|++|++.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987654
No 57
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.66 E-value=3.6e+02 Score=28.76 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
.+..+++.+++.+|+++ . .+.+++..-. .+| -. + .+.+...++|+.+. .+-.+++++|--
T Consensus 279 ~~~~~~~~~i~~lr~~~-----~-~i~i~~d~Iv-----G~P-gE-T---~ed~~~tl~~i~~l-~~~~~~~~~~sp 338 (439)
T PRK14328 279 YTREYYLELVEKIKSNI-----P-DVAITTDIIV-----GFP-GE-T---EEDFEETLDLVKEV-RYDSAFTFIYSK 338 (439)
T ss_pred CCHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECC-CC-C---HHHHHHHHHHHHhc-CCCcccceEecC
Confidence 45677788888877753 2 2445443221 132 10 0 12377788888654 355667776543
No 58
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=38.19 E-value=1.1e+02 Score=30.99 Aligned_cols=125 Identities=14% Similarity=0.214 Sum_probs=62.2
Q ss_pred HHHHHh--cCCEEEEeeCCC----CcccccCCHHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHHH
Q 012262 70 IKALAN--TGVGIVIGASSG----DIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMAN 143 (467)
Q Consensus 70 l~A~~~--tgi~V~lGv~~~----~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~ 143 (467)
+.++++ .+++|++.|-.. ....+..+...-.++++ +|..+.......+|-+==|.... .......++..|+.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~-~~~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGA-RGDDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCC-CccHHHHHHHHHHH
Confidence 455665 389999988652 22334444433333322 22222222245566664343322 11234568889999
Q ss_pred HHHHHHhCCC-CCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 144 MQNALNAASL-GGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 144 v~~aL~~~gl-~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
+|+.|.+... .....++.+.... ...... ..+.+.-|.+..|++.|-.|=|..
T Consensus 135 lr~~l~~~~~~~~~~~lsi~v~~~---------~~~~~~---~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 135 LREALDKEGAEGKGYLLTIAVPAG---------PDKIDK---GYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHHhcccCCceEEEEEecCC---------hHHHHh---hhhhHHHHHhhCcEEEEeeeccCC
Confidence 9999986410 0113344442211 100000 001124466788999988887765
No 59
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=36.46 E-value=3.5e+02 Score=27.98 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCC
Q 012262 134 ISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPF 206 (467)
Q Consensus 134 ~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPy 206 (467)
...+...++.+++.|++..- ..+|+|-.-.. +. .. + +... +++..|++..|.||.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~-~~----------~~---~-d~~~-~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDP--DHPVTTNFMGS-WF----------NG---I-DYFK-WAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-EEE-EE-TT--------------S---S--HHH-HGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEeCcccc-cc----------Cc---C-CHHH-HHhhCCcceeccccC
Confidence 45678889999999998763 46888764322 11 10 1 1111 356789999999997
No 60
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=36.42 E-value=2.4e+02 Score=28.54 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=62.7
Q ss_pred HHHHHHHHh--cCCEEE--E--eeCCCC-cccccCCHHHHHHHHHhhccccCCCCeEEEEEec-cceecc-CCcchHHHH
Q 012262 67 PAIIKALAN--TGVGIV--I--GASSGD-IPALASDPNAATQWINSNVLPFYPASKIILITVG-NEVMIS-NDQNLISQL 137 (467)
Q Consensus 67 ~~vl~A~~~--tgi~V~--l--Gv~~~~-~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VG-NEvl~~-~~~~~~~~l 137 (467)
...+.+++. .++||+ + |=|... ...+++++..-.+++++ +..+...-.+.+|-+= =|.... +.......+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 344556664 479998 4 334322 34455565544444433 3333222234455432 111111 011234568
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 138 LPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 138 ~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
+..|+.+|++|.+.|+. +-|+.+-.... .+....|.. ..++ -|.+..|++.|=.|=|..
T Consensus 133 ~~~l~el~~~l~~~~~~--l~~~v~~~~~~-----~~~~~~~~~-~d~~----~l~~~vD~v~lMtYD~~~ 191 (318)
T cd02876 133 IQLVIHLGETLHSANLK--LILVIPPPREK-----GNQNGLFTR-KDFE----KLAPHVDGFSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHHhhcCCE--EEEEEcCcccc-----ccccccccc-cCHH----HHHhhccEEEEEeeccCC
Confidence 88999999999887652 43443321110 000011111 0122 245678999999987654
No 61
>PLN00196 alpha-amylase; Provisional
Probab=36.25 E-value=98 Score=33.18 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=38.3
Q ss_pred cceEEecCCCCCCCC---hHHHHHHHhhCCCCeE-----------------EEecCC----------HHHHHHHHhcCCE
Q 012262 30 FIGVNYGQVADNLPP---PAATAKLLQSTSIQKL-----------------RLYGAD----------PAIIKALANTGVG 79 (467)
Q Consensus 30 ~~GvnYg~~~~nlp~---~~~vv~llk~~~i~~V-----------------RiY~~d----------~~vl~A~~~tgi~ 79 (467)
..|+++-....+.-. -.+-+..|+++||+.| +.|+.| .++++++.+.||+
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 468887553322211 2344668899998887 445554 2567888899999
Q ss_pred EEEeeCC
Q 012262 80 IVIGASS 86 (467)
Q Consensus 80 V~lGv~~ 86 (467)
|++.+-.
T Consensus 108 VilDvV~ 114 (428)
T PLN00196 108 VIADIVI 114 (428)
T ss_pred EEEEECc
Confidence 9998754
No 62
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=36.16 E-value=93 Score=32.01 Aligned_cols=120 Identities=10% Similarity=0.174 Sum_probs=60.2
Q ss_pred HHHHh--cCCEEEEeeCC--C---CcccccCCHHHHHHHHHhhccccCCCCeEEEEEeccceecc--CCcchHHHHHHHH
Q 012262 71 KALAN--TGVGIVIGASS--G---DIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMIS--NDQNLISQLLPAM 141 (467)
Q Consensus 71 ~A~~~--tgi~V~lGv~~--~---~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~--~~~~~~~~l~~am 141 (467)
.+++. .++||++.|-- . ....+.+++..-.++++. +..+.....+.+|-+==|-... ........++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34443 58999988743 2 123344554433333332 2222211234444443332211 0123456788999
Q ss_pred HHHHHHHHhCCCCCceEEEEeeecc--cccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 142 ANMQNALNAASLGGKIKVSTVHAMS--VLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 142 ~~v~~aL~~~gl~~~IkVsT~~~~~--~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
+.+|++|++.+- ...++.+.... .+...| .++. |.+..|++.|-.|-|..
T Consensus 141 ~~lr~~l~~~~~--~~~ls~av~~~~~~~~~~~-----------d~~~----l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 141 KELREAFEPEAP--RLLLTAAVSAGKETIDAAY-----------DIPE----ISKYLDFINVMTYDFHG 192 (362)
T ss_pred HHHHHHHHhhCc--CeEEEEEecCChHHHhhcC-----------CHHH----HhhhcceEEEecccCCC
Confidence 999999998731 12344443211 111111 1222 45578999998888764
No 63
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.97 E-value=5.3e+02 Score=27.52 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCC
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFF 207 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf 207 (467)
.+..+++.+++.+|++. . .+.+++..-.. +| .. + .+.+...++|+.+. .+-.+++|+|-
T Consensus 269 ~~~~~~~~~v~~lr~~~----~--~i~i~~d~IvG-----~P-gE-t---~ed~~~tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 269 YRREKYLERIAEIREAL----P--DVVLSTDIIVG-----FP-GE-T---EEDFQETLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred CCHHHHHHHHHHHHHhC----C--CcEEEEeEEEE-----CC-CC-C---HHHHHHHHHHHHhc-CCCEeeeeEee
Confidence 45667778888877653 2 24455442221 22 10 0 12366788887654 35566777643
No 64
>PRK07198 hypothetical protein; Validated
Probab=34.98 E-value=35 Score=36.11 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=33.7
Q ss_pred HHHHhhCCCCeE-EEecCCHHHHHHHHhcCCEEEEeeCC
Q 012262 49 AKLLQSTSIQKL-RLYGADPAIIKALANTGVGIVIGASS 86 (467)
Q Consensus 49 v~llk~~~i~~V-RiY~~d~~vl~A~~~tgi~V~lGv~~ 86 (467)
.++|+.+||++| |+.+.++.-+.++.+.||+|.==++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 678999999999 99999998899999999999855543
No 65
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.67 E-value=1.6e+02 Score=31.98 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHhhCCCCeEEE-------ec-----CC-------HHHHHHHHhcCCEEEEeeCCCCcc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG-----AD-------PAIIKALANTGVGIVIGASSGDIP 90 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~-----~d-------~~vl~A~~~tgi~V~lGv~~~~~~ 90 (467)
++|++||+++|++..|+ +- .| .+++.++.+.||+-+|.+.--+++
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 78999999999877764 31 12 378899999999999999976655
No 66
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.38 E-value=4.3e+02 Score=26.26 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=52.3
Q ss_pred HHHHHHHhhCCCCeEEEecCC------HHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEEE
Q 012262 46 AATAKLLQSTSIQKLRLYGAD------PAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILI 119 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~d------~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I 119 (467)
.++++.....|++.||++..- ...++.+++.|++|.+.+-..+... .+++....+++.. ... +.+ .|
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~--~~~~~~~~~~~~~-~~~-Ga~---~i 166 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPV--HTLEYYVKLAKEL-EDM-GAD---SI 166 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCC--CCHHHHHHHHHHH-HHc-CCC---EE
Confidence 556777777899999999653 2455667789999987764221111 2334434444332 222 222 23
Q ss_pred EeccceeccCCcchHHHHHHHHHHHHHHH
Q 012262 120 TVGNEVMISNDQNLISQLLPAMANMQNAL 148 (467)
Q Consensus 120 ~VGNEvl~~~~~~~~~~l~~am~~v~~aL 148 (467)
.+.. . .+..++.++...++.+|+.+
T Consensus 167 ~l~D--T--~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 167 CIKD--M--AGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred EEcC--C--CCCCCHHHHHHHHHHHHHhC
Confidence 2221 1 13456777777777777654
No 67
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=34.07 E-value=78 Score=30.27 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=36.0
Q ss_pred HHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeCCCC
Q 012262 49 AKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGD 88 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~~~~ 88 (467)
.++|+.+||+.||+-..+|.=..++.+.||+|.=-+++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 6789999999999999999889999999999998888753
No 68
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=33.62 E-value=98 Score=30.61 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEEEEeccce
Q 012262 46 AATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEV 125 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEv 125 (467)
.|++.+|.++||+.-|. +-++.|.. +-|.. ++...|..|++.+=.|.-+.+++.-|+=.+-.
T Consensus 34 NemlAlL~~~gI~A~K~---------~~~~g~~~--l~Ve~-------~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgL 95 (246)
T COG4669 34 NEMLALLMSHGINAEKK---------ADKDGGTS--LLVEE-------SDFAEAVEILNQNGLPRKKFTTLGDIFPKDGL 95 (246)
T ss_pred HHHHHHHHHcCCcceee---------ccCCCceE--EEEcH-------HHHHHHHHHHHhcCCCCCCCCcHHHhCCcccc
Confidence 57899999999988887 21223333 33332 12357889999887766555666555555544
Q ss_pred ecc
Q 012262 126 MIS 128 (467)
Q Consensus 126 l~~ 128 (467)
+..
T Consensus 96 VsS 98 (246)
T COG4669 96 VSS 98 (246)
T ss_pred cCC
Confidence 443
No 69
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.36 E-value=1.1e+02 Score=27.30 Aligned_cols=43 Identities=12% Similarity=0.253 Sum_probs=33.1
Q ss_pred hHHHHHHHhhCCCCeEEEecC---------------------C--HHHHHHHHhcCCEEEEeeCCC
Q 012262 45 PAATAKLLQSTSIQKLRLYGA---------------------D--PAIIKALANTGVGIVIGASSG 87 (467)
Q Consensus 45 ~~~vv~llk~~~i~~VRiY~~---------------------d--~~vl~A~~~tgi~V~lGv~~~ 87 (467)
|++.++.||+.+++.|-+|.- | .++++|+.+.||+|++-+...
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 567778888877887777643 1 378899999999999887754
No 70
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=32.36 E-value=47 Score=33.94 Aligned_cols=218 Identities=17% Similarity=0.245 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCEEE--EeeCCCCccc----c-cCC-------HHHHHHHHHhhccccCCC-CeEEEEEeccceeccCC-
Q 012262 67 PAIIKALANTGVGIV--IGASSGDIPA----L-ASD-------PNAATQWINSNVLPFYPA-SKIILITVGNEVMISND- 130 (467)
Q Consensus 67 ~~vl~A~~~tgi~V~--lGv~~~~~~~----~-a~~-------~~~a~~Wv~~~v~~~~p~-~~I~~I~VGNEvl~~~~- 130 (467)
..+++-++..||+|- .=||-...+. . ..+ .+...++|++-+..| .. .+|...=|=||++...+
T Consensus 62 D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~ 140 (320)
T PF00331_consen 62 DAILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGN 140 (320)
T ss_dssp HHHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSS
T ss_pred hHHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCc
Confidence 356777778888874 3345433221 1 011 233456666655555 43 37888888899998631
Q ss_pred -----cch------HHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCC-
Q 012262 131 -----QNL------ISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSP- 198 (467)
Q Consensus 131 -----~~~------~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~- 198 (467)
... ...+..+.+-.|++..+ ++.-.-+ ++++.. .....+..+++.|.+.+-+
T Consensus 141 ~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~~---------~k~~~~~~lv~~l~~~gvpI 204 (320)
T PF00331_consen 141 PGGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIESP---------AKRDAYLNLVKDLKARGVPI 204 (320)
T ss_dssp SSSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTST---------HHHHHHHHHHHHHHHTTHCS
T ss_pred cccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccch---------HHHHHHHHHHHHHHhCCCcc
Confidence 012 23455677777776642 3433322 222221 0011255677777655422
Q ss_pred --ceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEEeeccCCCCCC
Q 012262 199 --FTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDP 276 (467)
Q Consensus 199 --~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtETGWPS~G~~ 276 (467)
+++-.| .... +. .+.+..+|+++.--+++|.|||.-=......
T Consensus 205 dgIG~Q~H-------------------------~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 205 DGIGLQSH-------------------------FDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp -EEEEEEE-------------------------EETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred ceechhhc-------------------------cCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 222111 1110 00 2334444555544569999999754333221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEE-EEEeecC-CCCCCCcCCCceeeecCCCCeee
Q 012262 277 NEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTY-IFALYDE-DLKPGPAFERSFGLFKPDLSAAY 344 (467)
Q Consensus 277 ~~~~as~~na~~y~~~lv~~~~~~~gTp~rpg~~~~~y-iF~~FDE-~wK~g~~~E~~wGlf~~d~~~ky 344 (467)
.. ....+.|+.+++.+++.+.+. | |. .++.+ +.-+.|. .|.+... -.+=+||+.|.+||-
T Consensus 250 ~~-~~~~~~qA~~~~~~~~~~~~~---~--~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 250 PD-AEEEEAQAEYYRDFLTACFSH---P--PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKP 311 (320)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHT---T--HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-H
T ss_pred cc-hHHHHHHHHHHHHHHHHHHhC---C--cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCH
Confidence 10 234677888999999988873 1 01 23333 3344553 3554311 233478999988884
No 71
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.24 E-value=1.1e+02 Score=26.89 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCeEEEe--c--------CC---HHHHHHHHhcCCEEE
Q 012262 46 AATAKLLQSTSIQKLRLY--G--------AD---PAIIKALANTGVGIV 81 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY--~--------~d---~~vl~A~~~tgi~V~ 81 (467)
+++.+.++++|++.|+++ . .. ..+|++|+..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 556778888999988887 3 22 578999999999975
No 72
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=32.24 E-value=72 Score=25.94 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=30.9
Q ss_pred CCeEEEEEeccc-eeccC-------CcchHHHHHHHHHHHHHHHHhCCCCCceEEEEe
Q 012262 113 ASKIILITVGNE-VMISN-------DQNLISQLLPAMANMQNALNAASLGGKIKVSTV 162 (467)
Q Consensus 113 ~~~I~~I~VGNE-vl~~~-------~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~ 162 (467)
...|.+-=|+|| ..... +......+.+.|+++-+++|+.+= ..|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 467999999999 55110 122357789999999999998764 4678765
No 73
>PRK09989 hypothetical protein; Provisional
Probab=32.13 E-value=4.3e+02 Score=25.52 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=38.4
Q ss_pred ceEEecCCCCCCCChHHHHHHHhhCCCCeEEEe---cCC-HHHHHHHHhcCCEEEE
Q 012262 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLY---GAD-PAIIKALANTGVGIVI 82 (467)
Q Consensus 31 ~GvnYg~~~~nlp~~~~vv~llk~~~i~~VRiY---~~d-~~vl~A~~~tgi~V~l 82 (467)
..+|.+..-.++ +-.+.++.+++.||+.|-+. +.+ .++.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456666666555 34678999999999999984 333 4677788899999886
No 74
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=31.84 E-value=98 Score=24.23 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=28.4
Q ss_pred HHHHHHHHhhccccCCCCeEEEEEeccceeccC--CcchHHHHHHHHHHHHHHHHh
Q 012262 97 NAATQWINSNVLPFYPASKIILITVGNEVMISN--DQNLISQLLPAMANMQNALNA 150 (467)
Q Consensus 97 ~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~--~~~~~~~l~~am~~v~~aL~~ 150 (467)
.-...|+++||.- |+|.++.+ +......|+|++...++.++.
T Consensus 11 ~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 11 EILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 3456899988743 44555543 223456799999999988875
No 75
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.57 E-value=5.2e+02 Score=28.38 Aligned_cols=60 Identities=8% Similarity=0.147 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
.+..+.+.+++.+|+++. .|.++|..-. .|| |. ..+.+...++|+.+. -|-.+++|+|--
T Consensus 344 ~t~e~~~~~v~~lr~~~p------~i~i~tdiIv-----GfP---gE--T~edf~~Tl~~v~~l-~~d~~~~f~ysp 403 (509)
T PRK14327 344 YTRESYLELVRKIKEAIP------NVALTTDIIV-----GFP---NE--TDEQFEETLSLYREV-GFDHAYTFIYSP 403 (509)
T ss_pred CCHHHHHHHHHHHHHhCC------CcEEeeeEEE-----eCC---CC--CHHHHHHHHHHHHHc-CCCeEEEeeeeC
Confidence 456778888888887531 2555544221 233 10 012266777877654 333456665433
No 76
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=31.17 E-value=98 Score=26.62 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCCCeEEEec--CC---HHHHHHHHhcCCEEEE
Q 012262 46 AATAKLLQSTSIQKLRLYG--AD---PAIIKALANTGVGIVI 82 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~--~d---~~vl~A~~~tgi~V~l 82 (467)
+++.+.++++|+..|+++- .. ..+|++|+..||++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4567788889999999883 33 6899999999998653
No 77
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.14 E-value=5.7e+02 Score=27.18 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=39.9
Q ss_pred EEEEeccceecc------CCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHH
Q 012262 117 ILITVGNEVMIS------NDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQ 190 (467)
Q Consensus 117 ~~I~VGNEvl~~------~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~ 190 (467)
..+.+|=|-... +...+..+...+++.+|+.+ . .+.|++..-. .+| |. ..+.+...++
T Consensus 251 ~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~-~i~i~~d~Iv-----GfP---gE--T~edf~~tl~ 314 (434)
T PRK14330 251 KSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV-----P-DASISSDIIV-----GFP---TE--TEEDFMETVD 314 (434)
T ss_pred CceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECC---CC--CHHHHHHHHH
Confidence 456666554332 01235667777888777752 1 2556655322 232 10 0122778888
Q ss_pred HHHhcCCCceecCCCCCcc
Q 012262 191 FLKDHGSPFTINPYPFFAY 209 (467)
Q Consensus 191 fL~~~~d~~~vNiyPyf~~ 209 (467)
|+.+.. +-.+|+++|-..
T Consensus 315 fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 315 LVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHhcC-CCEEeeeeccCC
Confidence 887543 445666665443
No 78
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.99 E-value=4.4e+02 Score=26.37 Aligned_cols=142 Identities=13% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCCChHHHHHHHhhCCCCeEEEecCC-------HHHHHHHH---hcCCEEEEeeCCCCcccccCCH---HHHHHHHHhhc
Q 012262 41 NLPPPAATAKLLQSTSIQKLRLYGAD-------PAIIKALA---NTGVGIVIGASSGDIPALASDP---NAATQWINSNV 107 (467)
Q Consensus 41 nlp~~~~vv~llk~~~i~~VRiY~~d-------~~vl~A~~---~tgi~V~lGv~~~~~~~~a~~~---~~a~~Wv~~~v 107 (467)
+.+++.+.++.|+..|++.|-+-.+. ..+++.+. ..--++.+|-|.=.......+. .....-+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 56889999999999999999998876 24444433 3346899998862210111122 22222233332
Q ss_pred cccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhh
Q 012262 108 LPFYPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRG 187 (467)
Q Consensus 108 ~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ 187 (467)
..-.++..+..+-=||+- .+.. +-..++..|++.++. ++-|+|.+. +| .+..
T Consensus 136 ~~~~~~~a~vlmGHGt~h-------~an~---~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P----------~~~~ 187 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPH-------PANA---AYSALQAMLKKHGYP-NVFVGTVEG-------YP----------SLED 187 (262)
T ss_dssp -TT-TTEEEEEEE---SC-------HHHH---HHHHHHHHHHCCT-T-TEEEEETTS-------SS----------BHHH
T ss_pred cccCCCCEEEEEeCCCCC-------CccH---HHHHHHHHHHhCCCC-eEEEEEeCC-------CC----------CHHH
Confidence 211133444344444432 2222 334456778888776 588999864 32 1456
Q ss_pred HHHHHHhcCCCceecCCCCCccCC
Q 012262 188 ILQFLKDHGSPFTINPYPFFAYQS 211 (467)
Q Consensus 188 ll~fL~~~~d~~~vNiyPyf~~~~ 211 (467)
++..|.+. .+=-|.+.||.--..
T Consensus 188 vi~~L~~~-g~k~V~L~PlMlVAG 210 (262)
T PF06180_consen 188 VIARLKKK-GIKKVHLIPLMLVAG 210 (262)
T ss_dssp HHHHHHHH-T-SEEEEEEESSS--
T ss_pred HHHHHHhc-CCCeEEEEecccccc
Confidence 77777654 344588899876443
No 79
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.66 E-value=4.9e+02 Score=27.64 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
.+..++..+++.+|+++ . .+.++|..-. .|| |. ..+.+...++|+.+. .+-.+|+++|--
T Consensus 256 ~~~~~~~~~i~~lr~~~-----p-gi~i~~d~Iv-----GfP---GE--T~edf~~tl~fi~~~-~~~~~~v~~ysp 315 (418)
T PRK14336 256 YTNQQYRELVERLKTAM-----P-DISLQTDLIV-----GFP---SE--TEEQFNQSYKLMADI-GYDAIHVAAYSP 315 (418)
T ss_pred CCHHHHHHHHHHHHhhC-----C-CCEEEEEEEE-----ECC---CC--CHHHHHHHHHHHHhc-CCCEEEeeecCC
Confidence 45677888888888753 2 2555544322 233 10 012377888888764 334456666543
No 80
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.23 E-value=57 Score=35.05 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 012262 134 ISQLLPAMANMQNALNAASLG 154 (467)
Q Consensus 134 ~~~l~~am~~v~~aL~~~gl~ 154 (467)
....+.-++.+.+.|.++||.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 345667777888999999986
No 81
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=29.35 E-value=3.8e+02 Score=25.55 Aligned_cols=92 Identities=14% Similarity=0.321 Sum_probs=56.0
Q ss_pred hHHHHHHHhhCCCCeEEEecCC-----HHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCC-CeEEE
Q 012262 45 PAATAKLLQSTSIQKLRLYGAD-----PAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPA-SKIIL 118 (467)
Q Consensus 45 ~~~vv~llk~~~i~~VRiY~~d-----~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~-~~I~~ 118 (467)
|.+.++.+...|.+.|= +..+ ..+++.+++.|+++-|.+.... .+. .+.+|.+. +.|.-
T Consensus 69 P~~~i~~~~~~g~~~i~-~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~------------~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 69 PERYIEEFAEAGADYIT-FHAEATEDPKETIKYIKEAGIKAGIALNPET--PVE------------ELEPYLDQVDMVLV 133 (201)
T ss_dssp GGGHHHHHHHHT-SEEE-EEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GG------------GGTTTGCCSSEEEE
T ss_pred HHHHHHHHHhcCCCEEE-EcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cch------------HHHHHhhhcCEEEE
Confidence 46677777777766553 3222 4788999999999988876531 221 13344433 34444
Q ss_pred EEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCC
Q 012262 119 ITVGNEVMISNDQNLISQLLPAMANMQNALNAASLG 154 (467)
Q Consensus 119 I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~ 154 (467)
.+| |+=.. ++...+..+..|+.+|+.+.+.|++
T Consensus 134 MsV--~PG~~-Gq~f~~~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 134 MSV--EPGFG-GQKFIPEVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp ESS---TTTS-SB--HGGHHHHHHHHHHHHHHHTCG
T ss_pred EEe--cCCCC-cccccHHHHHHHHHHHHHHHhcCCc
Confidence 443 33122 4677888999999999999998875
No 82
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=28.31 E-value=8.2e+02 Score=26.81 Aligned_cols=91 Identities=21% Similarity=0.153 Sum_probs=51.0
Q ss_pred hcCCEEEEeeCCCC--------c---ccccC---CH--HHHHHHHHhhccccC-CCCeEEEEEeccceecc------CC-
Q 012262 75 NTGVGIVIGASSGD--------I---PALAS---DP--NAATQWINSNVLPFY-PASKIILITVGNEVMIS------ND- 130 (467)
Q Consensus 75 ~tgi~V~lGv~~~~--------~---~~~a~---~~--~~a~~Wv~~~v~~~~-p~~~I~~I~VGNEvl~~------~~- 130 (467)
+.+|+|+..-|-.. . ..+.. +. ++-...+.+-|+.|- -+..|-+|.+.||+... ..
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 45699999999631 1 11211 10 122233444455553 24789999999999862 11
Q ss_pred -cchHHHHHHHHHH-HHHHHHhCCCCCceEEE-Eeeec
Q 012262 131 -QNLISQLLPAMAN-MQNALNAASLGGKIKVS-TVHAM 165 (467)
Q Consensus 131 -~~~~~~l~~am~~-v~~aL~~~gl~~~IkVs-T~~~~ 165 (467)
.-++.++...|++ +.-+|++.++...+|+- ..|++
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 2346777888876 99999999985458864 34544
No 83
>CHL00041 rps11 ribosomal protein S11
Probab=28.24 E-value=1.4e+02 Score=26.07 Aligned_cols=36 Identities=6% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCCCeEEEec--CC---HHHHHHHHhcCCEEE
Q 012262 46 AATAKLLQSTSIQKLRLYG--AD---PAIIKALANTGVGIV 81 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~--~d---~~vl~A~~~tgi~V~ 81 (467)
+++.+.++++|++.|+++= .. ..++++|+..||+|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4566777888999988883 22 688999999999864
No 84
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.69 E-value=4.5e+02 Score=26.04 Aligned_cols=89 Identities=7% Similarity=0.023 Sum_probs=51.5
Q ss_pred HHHHHHhhCCCCeEEEecCC------HHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEEEE
Q 012262 47 ATAKLLQSTSIQKLRLYGAD------PAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILIT 120 (467)
Q Consensus 47 ~vv~llk~~~i~~VRiY~~d------~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~ 120 (467)
++++.....|++.||++... ...++.+++.|++|.+++..... .+.+....+++.. ..+ + +..|.
T Consensus 86 ~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~----~~~~~~~~~~~~~-~~~-g---~~~i~ 156 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG----YSDEELLELLELV-NEI-K---PDVFY 156 (266)
T ss_pred HHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecC----CCHHHHHHHHHHH-HhC-C---CCEEE
Confidence 45666667789999999654 24556667889999988875321 3444444444443 222 2 22233
Q ss_pred eccceeccCCcchHHHHHHHHHHHHHHH
Q 012262 121 VGNEVMISNDQNLISQLLPAMANMQNAL 148 (467)
Q Consensus 121 VGNEvl~~~~~~~~~~l~~am~~v~~aL 148 (467)
+..- .+..++.++-..++.+|+.+
T Consensus 157 l~DT----~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 157 IVDS----FGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred EecC----CCCCCHHHHHHHHHHHHHhc
Confidence 2210 13456667777777776644
No 85
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.51 E-value=4.5e+02 Score=28.29 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=62.9
Q ss_pred EEEEEec-----cceecc-CCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHH
Q 012262 116 IILITVG-----NEVMIS-NDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGIL 189 (467)
Q Consensus 116 I~~I~VG-----NEvl~~-~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll 189 (467)
...|.+| +++|-+ +-..+..+...+++.+|++.. .+.++|.. +. .|| |.= .+.+...+
T Consensus 261 ~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~----Iv-GfP---gET--~edf~~tl 324 (449)
T PRK14332 261 CPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDI----IV-GFP---NET--EEEFEDTL 324 (449)
T ss_pred cceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEE----Ee-eCC---CCC--HHHHHHHH
Confidence 3566666 333322 123567788888888887632 24455432 21 233 110 12267788
Q ss_pred HHHHhcCCCceecCCCCCccCCCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEEeec
Q 012262 190 QFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETG 269 (467)
Q Consensus 190 ~fL~~~~d~~~vNiyPyf~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtETG 269 (467)
+|+.+ ..|=.+++|+|-..-..+ .+..+.. .+.+.....++..+.+-|-.-.....++.-....+|+|.|.+
T Consensus 325 ~~v~~-l~~~~~~~f~ys~~~GT~-----a~~~~~~--~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~ 396 (449)
T PRK14332 325 AVVRE-VQFDMAFMFKYSEREGTM-----AKRKLPD--NVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTS 396 (449)
T ss_pred HHHHh-CCCCEEEEEEecCCCCCh-----hHHhCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 88754 445566777754432221 1111211 122222223455555555443344444432256888887644
No 86
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=27.29 E-value=5.7e+02 Score=24.60 Aligned_cols=104 Identities=16% Similarity=0.270 Sum_probs=64.6
Q ss_pred HHHHHHhhCCCCeEEEecCC-----------HHHHHHHHhcCCEEEEeeCCCC---cccc--cCCHHHHHHHHHhhcccc
Q 012262 47 ATAKLLQSTSIQKLRLYGAD-----------PAIIKALANTGVGIVIGASSGD---IPAL--ASDPNAATQWINSNVLPF 110 (467)
Q Consensus 47 ~vv~llk~~~i~~VRiY~~d-----------~~vl~A~~~tgi~V~lGv~~~~---~~~~--a~~~~~a~~Wv~~~v~~~ 110 (467)
...+.||+.|+..|=.|=++ +.=++.+...|++|+. |++.. .... +.-...|.+-++.+..--
T Consensus 24 ~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A~~lG 102 (212)
T cd06418 24 ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAARALG 102 (212)
T ss_pred HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHHHHcC
Confidence 55677788888777666333 3446778889998764 23321 1111 122234444455444444
Q ss_pred CCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCC
Q 012262 111 YPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLG 154 (467)
Q Consensus 111 ~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~ 154 (467)
.|...+.++.|=.... .......++|+++-+.++|...||.
T Consensus 103 ~p~gs~IYfavD~d~~---~~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 103 FPPGTIIYFAVDFDAL---DDEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred CCCCCEEEEEeecCCC---cchhHHHHHHHHHHHHHHHHhcCCc
Confidence 5766677888843332 1234568999999999999999875
No 87
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=26.51 E-value=2.4e+02 Score=32.93 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred HHHHHHHhhCCCCeEEEecC--CHHHHHHHHhcCCEEEEeeCCCC--cccccCCHHHHHHHHHhhcccc--CCCCeEEEE
Q 012262 46 AATAKLLQSTSIQKLRLYGA--DPAIIKALANTGVGIVIGASSGD--IPALASDPNAATQWINSNVLPF--YPASKIILI 119 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~--d~~vl~A~~~tgi~V~lGv~~~~--~~~~a~~~~~a~~Wv~~~v~~~--~p~~~I~~I 119 (467)
.++++++|..|++.||+..- ++.-++.+...||-|+--..... .+.-..-.+.+..=+++.|... .| .|.-=
T Consensus 324 ~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~~~i~~mver~knHP--SIiiW 401 (808)
T COG3250 324 ERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVSEEVRRMVERDRNHP--SIIIW 401 (808)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHHHHHHHHHHhccCCC--cEEEE
Confidence 56788999999999999842 37888888899999987665432 1100011122223344444432 35 47778
Q ss_pred Eeccceec
Q 012262 120 TVGNEVMI 127 (467)
Q Consensus 120 ~VGNEvl~ 127 (467)
++|||.-.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999753
No 88
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=26.45 E-value=1.6e+02 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCeEEEe--c--------CC---HHHHHHHHhcCCEEE
Q 012262 46 AATAKLLQSTSIQKLRLY--G--------AD---PAIIKALANTGVGIV 81 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY--~--------~d---~~vl~A~~~tgi~V~ 81 (467)
+++.+.++++|++.|+++ . .. ..+|++|+..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 456778888999988887 3 33 479999999999975
No 89
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=26.32 E-value=1.5e+02 Score=32.21 Aligned_cols=46 Identities=11% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCCeEEE-------ec------CC-------HHHHHHHHhcCCEEEEeeCCCCccc
Q 012262 46 AATAKLLQSTSIQKLRL-------YG------AD-------PAIIKALANTGVGIVIGASSGDIPA 91 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRi-------Y~------~d-------~~vl~A~~~tgi~V~lGv~~~~~~~ 91 (467)
++++++|+++|++..|+ +- .| ..++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 78999999999877764 31 13 3788999999999999998766553
No 90
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=26.23 E-value=1.6e+02 Score=30.35 Aligned_cols=77 Identities=26% Similarity=0.283 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHH
Q 012262 67 PAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMANMQN 146 (467)
Q Consensus 67 ~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~ 146 (467)
-.||+++.++|-.+.+|=.-- . .-.++.|..|+...+..++ .+|.+|+.-|.-+.. - + -+
T Consensus 175 m~VLkp~idsGkik~~Ge~~~--d--~W~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag-------G---a----I~ 234 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQWT--D--GWLPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG-------G---A----IA 234 (341)
T ss_pred HHHHHHHhhCCceEEeeeccc--c--ccCHHHHHHHHHHHHhccc--CceeEEEcCCCchhH-------H---H----HH
Confidence 378998888884444664322 2 2467888999988888875 458888876652221 1 1 24
Q ss_pred HHHhCCCCCceEEEEee
Q 012262 147 ALNAASLGGKIKVSTVH 163 (467)
Q Consensus 147 aL~~~gl~~~IkVsT~~ 163 (467)
+|++.||.+.+|||=-+
T Consensus 235 aL~a~Gl~g~vpVsGQD 251 (341)
T COG4213 235 ALKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHHhcccCCCCcccCcc
Confidence 67888999889876443
No 91
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.66 E-value=6.6e+02 Score=26.66 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
.+..+.+.+++.+|+++. .+.++|. ++. .|| |. ..+.+...++|+.+ ..+-.+++|+|-.
T Consensus 262 ~t~~~~~~~v~~lr~~~p------~i~i~~d----~Iv-GfP---gE--Teedf~~Tl~fl~~-l~~~~~~~f~~sp 321 (420)
T PRK14339 262 YTKEWFLNRAEKLRALVP------EVSISTD----IIV-GFP---GE--SDKDFEDTMDVLEK-VRFEQIFSFKYSP 321 (420)
T ss_pred CCHHHHHHHHHHHHHHCC------CCEEEEE----EEE-ECC---CC--CHHHHHHHHHHHHh-cCCCEEeeEecCC
Confidence 356678888888887532 2556663 222 233 10 01227778888764 3444567776433
No 92
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=2.5e+02 Score=30.26 Aligned_cols=134 Identities=15% Similarity=0.197 Sum_probs=77.1
Q ss_pred cCCcceEEecCCCCCCCC-h---HHHHHHHhh-CCCCeEEEecCC-----HHHHHHHHhc-CCEEEEeeCCCCcccccCC
Q 012262 27 SQSFIGVNYGQVADNLPP-P---AATAKLLQS-TSIQKLRLYGAD-----PAIIKALANT-GVGIVIGASSGDIPALASD 95 (467)
Q Consensus 27 ~~~~~GvnYg~~~~nlp~-~---~~vv~llk~-~~i~~VRiY~~d-----~~vl~A~~~t-gi~V~lGv~~~~~~~~a~~ 95 (467)
....+|.|=+.||-+++. . .+.++.|.+ .|+.+||+=..+ .++++|++++ .+-=.+-+|. ++-..
T Consensus 192 EI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPv---QsGsd- 267 (437)
T COG0621 192 EIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPV---QSGSD- 267 (437)
T ss_pred EEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCcc---ccCCH-
Confidence 445789999999988863 2 333443322 468899997766 4788888864 3333344442 22110
Q ss_pred HHHHHHHHHhhccccCCCCeEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCC
Q 012262 96 PNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPS 175 (467)
Q Consensus 96 ~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS 175 (467)
. |-+ .+.| ..+..+.+.-++.+|+++...-++..|=|+ ||
T Consensus 268 --~----ILk-------------------~M~R--~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVG-----------FP-- 307 (437)
T COG0621 268 --R----ILK-------------------RMKR--GYTVEEYLEIIEKLRAARPDIAISTDIIVG-----------FP-- 307 (437)
T ss_pred --H----HHH-------------------HhCC--CcCHHHHHHHHHHHHHhCCCceEeccEEEE-----------CC--
Confidence 0 111 1233 356778888889998877655544444444 33
Q ss_pred CccccccchhhhHHHHHHhcCCCceecCCCCCc
Q 012262 176 SGSFIRQDTMRGILQFLKDHGSPFTINPYPFFA 208 (467)
Q Consensus 176 ~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~ 208 (467)
|.- .+.....++|+. ..-|=.+|+++|=.
T Consensus 308 -gET--eedFe~tl~lv~-e~~fd~~~~F~YSp 336 (437)
T COG0621 308 -GET--EEDFEETLDLVE-EVRFDRLHVFKYSP 336 (437)
T ss_pred -CCC--HHHHHHHHHHHH-HhCCCEEeeeecCC
Confidence 100 011445666654 55677889998643
No 93
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.26 E-value=7.7e+02 Score=25.46 Aligned_cols=79 Identities=23% Similarity=0.287 Sum_probs=49.0
Q ss_pred CcceEEecCCCCCCCChHHHHHHHhhCCCCeEEEecCCHHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhcc
Q 012262 29 SFIGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVL 108 (467)
Q Consensus 29 ~~~GvnYg~~~~nlp~~~~vv~llk~~~i~~VRiY~~d~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~ 108 (467)
..+|||.-...++ +..++.++.+.+.+...|=+..-+|..++.+++.||+|+.-|+. ...|..+.+..
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~G-- 123 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENG-- 123 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcC--
Confidence 4677777443322 22345677666667777766555566678899999999977764 23444444432
Q ss_pred ccCCCCeEEEEEeccce
Q 012262 109 PFYPASKIILITVGNEV 125 (467)
Q Consensus 109 ~~~p~~~I~~I~VGNEv 125 (467)
.+. -|+-|.|.
T Consensus 124 ----aD~--vVaqG~EA 134 (320)
T cd04743 124 ----ARK--FIFEGREC 134 (320)
T ss_pred ----CCE--EEEecCcC
Confidence 232 37788887
No 94
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=24.98 E-value=8.1e+02 Score=25.92 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCcc
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAY 209 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~~ 209 (467)
.+..+++.+++.+|++. . .+.|++..-. .+| |. ..+.+...++|+.+. .+-.+++++|--+
T Consensus 267 ~~~~~~~~~i~~l~~~~----~--~i~i~~~~I~-----G~P---gE--T~e~~~~t~~fl~~~-~~~~~~~~~~sp~ 327 (430)
T TIGR01125 267 GSGEQQLDFIERLREKC----P--DAVLRTTFIV-----GFP---GE--TEEDFQELLDFVEEG-QFDRLGAFTYSPE 327 (430)
T ss_pred CCHHHHHHHHHHHHHhC----C--CCeEeEEEEE-----ECC---CC--CHHHHHHHHHHHHhc-CCCEEeeeeccCC
Confidence 45667888888877752 1 2445543211 122 10 012377888988754 4556777776554
No 95
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=24.90 E-value=2.7e+02 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHHHHhhhcccCCcceEEecCCC
Q 012262 5 NSNSSLFLFVSLLLFQVLHFSSSQSFIGVNYGQVA 39 (467)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~ 39 (467)
.|-+.++..++++++...+.....+.|||......
T Consensus 2 k~~~~lla~va~~~a~~~aa~~~d~~IGis~~d~~ 36 (341)
T COG4213 2 KSKSTLLALVASLAATAAAAAAKDGVIGISMPDLR 36 (341)
T ss_pred cHHHHHHHHHHHhhhhhhhhhccCCeEEEEcCChh
Confidence 44555555566666555555566778999987643
No 96
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.77 E-value=7.9e+02 Score=26.11 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCccCC
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQS 211 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~~~~ 211 (467)
.+..+...+++.+|+++. .|.|++..-. .+| |.- .+.+...++|+.+.. +-.+++|+|--.
T Consensus 277 ~t~~~~~~~v~~lr~~~~------gi~i~~d~Iv-----G~P---gET--~ed~~~tl~~l~~l~-~~~i~~f~~sp~-- 337 (437)
T PRK14331 277 YTKEEYLEKIELLKEYIP------DITFSTDIIV-----GFP---TET--EEDFEETLDVLKKVE-FEQVFSFKYSPR-- 337 (437)
T ss_pred CCHHHHHHHHHHHHHhCC------CCEEecCEEE-----ECC---CCC--HHHHHHHHHHHHhcC-cceeeeeEecCC--
Confidence 466778888888877532 2444443221 132 100 123777888886543 445677765322
Q ss_pred CCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCCCCceEEEEee
Q 012262 212 DPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAET 268 (467)
Q Consensus 212 ~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~~~~~vvVtET 268 (467)
|..- -|.+. . .+.+.....+...+.+-+.+-.....+++-...++|+|.|.
T Consensus 338 -pGT~--~~~~~--~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~ 388 (437)
T PRK14331 338 -PGTP--AAYME--G-QEPDEVKTKRMNRLLELQKEITFKKALSYEGTVQEVLVEEE 388 (437)
T ss_pred -CCcc--hhhCC--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEe
Confidence 2111 11111 1 11111112345555555555444444443225678888653
No 97
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=24.59 E-value=4.9e+02 Score=27.57 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccccchhhhHHHHHHhcCCCceecCCCCCcc
Q 012262 133 LISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAY 209 (467)
Q Consensus 133 ~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~~~~~~~ll~fL~~~~d~~~vNiyPyf~~ 209 (467)
....++..|+.+|++|+..++. +-++.+..... . ..|. +. -|.+..||+.+-.|=|+..
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~~--ls~av~~~~~~--~------~~~d----~~----~l~~~vD~inlMtYD~~g~ 225 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGLL--LTLTVLPHVNS--T------WYFD----VP----AIANNVDFVNLATFDFLTP 225 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCcE--EEEEecCCchh--c------cccC----HH----HHhhcCCEEEEEEecccCC
Confidence 3456888999999999876642 32322111000 0 0011 22 3556789999999987653
No 98
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.54 E-value=3e+02 Score=25.91 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHcCCCCceEEEEe-eccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHh
Q 012262 240 NMFDAQVDAVHSALNAMGFKDVEIVVAE-TGWPYRGDPN-EVGPSVENAKAYNGNLIAHLRS 299 (467)
Q Consensus 240 n~fda~~dav~~a~~k~g~~~~~vvVtE-TGWPS~G~~~-~~~as~~na~~y~~~lv~~~~~ 299 (467)
..++..++.+ +.++|++||++.| .++|.. ... ......+..+...+..++.+..
T Consensus 78 ~~~~~fv~~i-----R~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 78 ERLDGFVKTI-----REAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp HHHHHHHHHH-----HTT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 4578999999999 455544 332 2346777777888888888754
No 99
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=24.48 E-value=1.5e+02 Score=32.17 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=32.9
Q ss_pred hcccCCcceEEecCCCCCC----CCh------HHHHHHHhhCCC-CeEEEecCC-HHHHH
Q 012262 24 FSSSQSFIGVNYGQVADNL----PPP------AATAKLLQSTSI-QKLRLYGAD-PAIIK 71 (467)
Q Consensus 24 ~~~~~~~~GvnYg~~~~nl----p~~------~~vv~llk~~~i-~~VRiY~~d-~~vl~ 71 (467)
++..+--++|.|.++-.+. +.+ .++++.|+++|| ..|=||.=| |.-|.
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~ 140 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLV 140 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHH
Confidence 3444556899999985442 343 457888888998 578888777 65453
No 100
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.34 E-value=6.5e+02 Score=24.28 Aligned_cols=50 Identities=10% Similarity=0.079 Sum_probs=36.2
Q ss_pred eEEecCCCCCCCChHHHHHHHhhCCCCeEEEecC---C-HHHHHHHHhcCCEEEE
Q 012262 32 GVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGA---D-PAIIKALANTGVGIVI 82 (467)
Q Consensus 32 GvnYg~~~~nlp~~~~vv~llk~~~i~~VRiY~~---d-~~vl~A~~~tgi~V~l 82 (467)
.+|.+..-.++| .++.++.+++.||+.|-++.. + ..+.+.++.+||+|..
T Consensus 5 ~~~~~~~~~~~~-l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 5 SANLSMLFGEYD-FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeehhccCCC-HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 345444444443 477899999999999998754 3 4677788899999975
No 101
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.94 E-value=58 Score=27.50 Aligned_cols=20 Identities=20% Similarity=0.188 Sum_probs=8.8
Q ss_pred cccchhHHHHHHHHHHHHhh
Q 012262 4 ANSNSSLFLFVSLLLFQVLH 23 (467)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (467)
|.|-.-++|.++|++||.++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 34555444444433444443
No 102
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=23.65 E-value=1.1e+02 Score=26.33 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=28.2
Q ss_pred HHHHHHHhhCCCCeEEEe--cCC---HHHHHHHHhcCCEEEE
Q 012262 46 AATAKLLQSTSIQKLRLY--GAD---PAIIKALANTGVGIVI 82 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY--~~d---~~vl~A~~~tgi~V~l 82 (467)
+.+++.++++|++.|+++ +.. ..+|++|+.+|++|..
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 345667788899988888 333 5789999999998653
No 103
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=23.47 E-value=85 Score=31.86 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCceEEEEeeccCCCCCC-CCC----C-CC--------------HHHHHHHHHHHHHHHHh
Q 012262 259 KDVEIVVAETGWPYRGDP-NEV----G-PS--------------VENAKAYNGNLIAHLRS 299 (467)
Q Consensus 259 ~~~~vvVtETGWPS~G~~-~~~----~-as--------------~~na~~y~~~lv~~~~~ 299 (467)
..|||++||.|+|+.-.. +++ . -| ---|++|++.++.+..+
T Consensus 205 ~sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 205 QSKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CCcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 369999999999985422 221 1 12 22377777777776543
No 104
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=23.38 E-value=1.6e+02 Score=32.06 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=32.5
Q ss_pred hcccCCcceEEecCCCCCC----CCh------HHHHHHHhhCCCC-eEEEecCC-HHHHH
Q 012262 24 FSSSQSFIGVNYGQVADNL----PPP------AATAKLLQSTSIQ-KLRLYGAD-PAIIK 71 (467)
Q Consensus 24 ~~~~~~~~GvnYg~~~~nl----p~~------~~vv~llk~~~i~-~VRiY~~d-~~vl~ 71 (467)
.+...--++|+|.++-.+. +.+ .++++.|++.||. .|=||.-| |.-|.
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~ 142 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLV 142 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHH
Confidence 4445667899999985432 333 3567788888984 67888777 55443
No 105
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=23.10 E-value=1.4e+02 Score=26.05 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHhhCCCCeEEEecCC----------HHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEE
Q 012262 49 AKLLQSTSIQKLRLYGAD----------PAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIIL 118 (467)
Q Consensus 49 v~llk~~~i~~VRiY~~d----------~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~ 118 (467)
++.|.+.|.++|-+.... ....+++++.|++...-.......... .......|+++. .| ++
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cE
Confidence 355666788888887633 245678888999865543332211110 111223376543 22 47
Q ss_pred EEeccceeccCCcchHHHHHHHHHHHHHHHHhCCC--CCceEEEEeee
Q 012262 119 ITVGNEVMISNDQNLISQLLPAMANMQNALNAASL--GGKIKVSTVHA 164 (467)
Q Consensus 119 I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl--~~~IkVsT~~~ 164 (467)
|+++|+.+.. .+ ..+|++.|+ .+.|.|-+-+.
T Consensus 72 ii~~~~~~a~-------~~-------~~~l~~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 72 IICSNDRLAL-------GV-------LRALRELGIRVPQDISVVSFDD 105 (160)
T ss_dssp EEESSHHHHH-------HH-------HHHHHHTTSCTTTTSEEEEESS
T ss_pred EEEcCHHHHH-------HH-------HHHHHHcCCcccccccEEEecC
Confidence 8887754322 22 244555665 34576666544
No 106
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=22.20 E-value=4.7e+02 Score=27.57 Aligned_cols=131 Identities=15% Similarity=0.255 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCCCCccccc---c-chhhhHHHHHHhcCCCceecCCCCC
Q 012262 132 NLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIR---Q-DTMRGILQFLKDHGSPFTINPYPFF 207 (467)
Q Consensus 132 ~~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pPS~g~F~~---~-~~~~~ll~fL~~~~d~~~vNiyPyf 207 (467)
.+..++...++++|+. .||+..-....-+...+ +.|.- . ..++.+++.|.+.+=-++++++|+.
T Consensus 40 ~~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v 107 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFV 107 (441)
T ss_dssp TSHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEE
T ss_pred CCHHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeeccc
Confidence 3456677777777662 48888776544454432 23321 1 1278899999999888999999977
Q ss_pred ccCCCCCCccccccccCCCCccccCCCCccccchHHHHHHHHHHHHHHcCC----CCceEEEEeeccCCCCCCCCCCCCH
Q 012262 208 AYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGF----KDVEIVVAETGWPYRGDPNEVGPSV 283 (467)
Q Consensus 208 ~~~~~~~~~~l~~A~f~~~~~~~d~~~~~~y~n~fda~~dav~~a~~k~g~----~~~~vvVtETGWPS~G~~~~~~as~ 283 (467)
..... +|. .++. +...|+ ++-...+++. ||-.+. -..-+-
T Consensus 108 ~~~~~------~~~-------------------~~~~--------~~~~~~~v~~~~g~~~~~~~-w~g~~~--~~Dftn 151 (441)
T PF01055_consen 108 SNDSP------DYE-------------------NYDE--------AKEKGYLVKNPDGSPYIGRV-WPGKGG--FIDFTN 151 (441)
T ss_dssp ETTTT------B-H-------------------HHHH--------HHHTT-BEBCTTSSB-EEEE-TTEEEE--EB-TTS
T ss_pred CCCCC------cch-------------------hhhh--------HhhcCceeecccCCcccccc-cCCccc--ccCCCC
Confidence 65321 111 1111 112222 2235667777 883321 122444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEe
Q 012262 284 ENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFAL 318 (467)
Q Consensus 284 ~na~~y~~~lv~~~~~~~gTp~rpg~~~~~yiF~~ 318 (467)
.+++.++++.++.+.+. .+++.++..+
T Consensus 152 p~a~~w~~~~~~~~~~~--------~Gvdg~w~D~ 178 (441)
T PF01055_consen 152 PEARDWWKEQLKELLDD--------YGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHHHHHTT--------ST-SEEEEES
T ss_pred hhHHHHHHHHHHHHHhc--------cCCceEEeec
Confidence 55788887777777652 2688888776
No 107
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.11 E-value=5e+02 Score=26.47 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHHHHhhCC-CCeEEEec---------CCHHHHHHHHhcCCEEEEeeCCC
Q 012262 47 ATAKLLQSTS-IQKLRLYG---------ADPAIIKALANTGVGIVIGASSG 87 (467)
Q Consensus 47 ~vv~llk~~~-i~~VRiY~---------~d~~vl~A~~~tgi~V~lGv~~~ 87 (467)
+.++.|++.+ +..||+.. .+++.++.++++|..+.+++--.
T Consensus 157 ~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~ 207 (321)
T TIGR03822 157 DIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHAN 207 (321)
T ss_pred HHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCC
Confidence 3444455443 55677754 23577788888887777776553
No 108
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.64 E-value=2.2e+02 Score=27.39 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=38.1
Q ss_pred ceEEecCCCCCCCChHHHHHHHhhCCCCeEEEecC---C-HHHHHHHHhcCCEEEE
Q 012262 31 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGA---D-PAIIKALANTGVGIVI 82 (467)
Q Consensus 31 ~GvnYg~~~~nlp~~~~vv~llk~~~i~~VRiY~~---d-~~vl~A~~~tgi~V~l 82 (467)
+.||++..-..+ +-++.++.+++.|++.|-++.. + ..+.+.+.++||+|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 467777655444 4578899999999999999742 2 4567778899999763
No 109
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.27 E-value=8.6e+02 Score=24.59 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCceEEEEeeecccccccCCC--CCccccc---c-chhhhHHHHHHhcCCCceecCCCC
Q 012262 133 LISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPP--SSGSFIR---Q-DTMRGILQFLKDHGSPFTINPYPF 206 (467)
Q Consensus 133 ~~~~l~~am~~v~~aL~~~gl~~~IkVsT~~~~~~l~~s~pP--S~g~F~~---~-~~~~~ll~fL~~~~d~~~vNiyPy 206 (467)
+.+++...++++|+. .||+..-.-..-|.....+ ..|.|.= . ...+.+++.|.+.+=-+++++.|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 456677777777653 4666665433233221100 0123321 1 126788999988888899999998
Q ss_pred Ccc
Q 012262 207 FAY 209 (467)
Q Consensus 207 f~~ 209 (467)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 764
No 110
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.84 E-value=4.9e+02 Score=25.52 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred hHHHHHHHhhCCCCeEEEe-cCC---HHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCC-CeEEEE
Q 012262 45 PAATAKLLQSTSIQKLRLY-GAD---PAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPA-SKIILI 119 (467)
Q Consensus 45 ~~~vv~llk~~~i~~VRiY-~~d---~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~-~~I~~I 119 (467)
|++-++.+...|.+.|=+- .+. ..+|+.+++.|+.|-.|+-...-.. .+.. .+|.+. +.|.-.
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp----~~~i--------~~~l~~vD~VLiM 147 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETP----ISLL--------EPYLDQIDLIQIL 147 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCC----HHHH--------HHHHhhcCEEEEE
Confidence 4666776666676665432 221 3677778888985555666532222 2221 122221 344444
Q ss_pred EeccceeccCCcchHHHHHHHHHHHHHHHHhCCCC
Q 012262 120 TVGNEVMISNDQNLISQLLPAMANMQNALNAASLG 154 (467)
Q Consensus 120 ~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl~ 154 (467)
+| |.=.. ++...+..+..|+++|+.+...|+.
T Consensus 148 tV--~PGfg-GQ~f~~~~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 148 TL--DPRTG-TKAPSDLILDRVIQVENRLGNRRVE 179 (228)
T ss_pred EE--CCCCC-CccccHHHHHHHHHHHHHHHhcCCC
Confidence 44 33222 4666778999999999999988875
No 111
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.80 E-value=7.6e+02 Score=23.74 Aligned_cols=88 Identities=15% Similarity=0.324 Sum_probs=53.5
Q ss_pred ChHHHHHHHhhCCCCeEEEecCC---HHHHHHHHh--cCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEE
Q 012262 44 PPAATAKLLQSTSIQKLRLYGAD---PAIIKALAN--TGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIIL 118 (467)
Q Consensus 44 ~~~~vv~llk~~~i~~VRiY~~d---~~vl~A~~~--tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~ 118 (467)
+++++.+.+ +.|.+.|++|-++ ++-++++++ .+++++. ...+ +.+.+..|++. .+.+
T Consensus 118 T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI-----~~~N~~~~l~a---------Ga~~ 179 (213)
T PRK06552 118 TVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGV-----NLDNVKDWFAA---------GADA 179 (213)
T ss_pred CHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCC-----CHHHHHHHHHC---------CCcE
Confidence 456666665 4689999999665 567777774 2355442 1222 23556677654 3567
Q ss_pred EEeccceeccCCcchHHHHHHHHHHHHHHHH
Q 012262 119 ITVGNEVMISNDQNLISQLLPAMANMQNALN 149 (467)
Q Consensus 119 I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~ 149 (467)
|.||...+.......++.+-...+++++.++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 8899877543112344566667777766654
No 112
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.71 E-value=1e+02 Score=26.53 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.3
Q ss_pred hHHHHHHHhhCC---CCeEEEecCCHH
Q 012262 45 PAATAKLLQSTS---IQKLRLYGADPA 68 (467)
Q Consensus 45 ~~~vv~llk~~~---i~~VRiY~~d~~ 68 (467)
|+++..+|+.+. =+++||||.|..
T Consensus 3 pe~a~plLrrL~~Pt~~RARlyd~dG~ 29 (112)
T PF13756_consen 3 PERARPLLRRLISPTRTRARLYDPDGN 29 (112)
T ss_pred HHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 577778888763 379999999943
No 113
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=20.42 E-value=2e+02 Score=31.09 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=33.3
Q ss_pred hcccCCcceEEecCCCCCCC---Ch------HHHHHHHhhCCC-CeEEEecCC-HHHHH
Q 012262 24 FSSSQSFIGVNYGQVADNLP---PP------AATAKLLQSTSI-QKLRLYGAD-PAIIK 71 (467)
Q Consensus 24 ~~~~~~~~GvnYg~~~~nlp---~~------~~vv~llk~~~i-~~VRiY~~d-~~vl~ 71 (467)
++..+--++|.|+++-.+.. .+ .++++.|++.|| ..|=||.-| |.-|+
T Consensus 65 lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~ 123 (467)
T TIGR01233 65 YGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALH 123 (467)
T ss_pred cCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHH
Confidence 44455568999998865532 22 457788888898 688888877 66554
No 114
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.09 E-value=5.7e+02 Score=24.15 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=49.3
Q ss_pred HHHHHHHhhCCCCeEEEecCC---------HHHHHHHHhcCCEEEEe--eCCCCcccccCCHHHHHHHHHhhccccCCCC
Q 012262 46 AATAKLLQSTSIQKLRLYGAD---------PAIIKALANTGVGIVIG--ASSGDIPALASDPNAATQWINSNVLPFYPAS 114 (467)
Q Consensus 46 ~~vv~llk~~~i~~VRiY~~d---------~~vl~A~~~tgi~V~lG--v~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~ 114 (467)
...++.|.+.|.++|=+.... ....++++..|+++.+- .+.....+.......+.+|++++ +
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-- 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P-- 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--
Confidence 445666777787777665433 12345667788876211 11111111112234556666542 1
Q ss_pred eEEEEEeccceeccCCcchHHHHHHHHHHHHHHHHhCCC--CCceEEEEeeecc
Q 012262 115 KIILITVGNEVMISNDQNLISQLLPAMANMQNALNAASL--GGKIKVSTVHAMS 166 (467)
Q Consensus 115 ~I~~I~VGNEvl~~~~~~~~~~l~~am~~v~~aL~~~gl--~~~IkVsT~~~~~ 166 (467)
.+++|++.|+.+.. -++ ++|++.|+ .+.|.|.+-+...
T Consensus 171 ~~~ai~~~~d~~a~-------g~~-------~~l~~~g~~vp~di~vigfd~~~ 210 (265)
T cd01543 171 KPVGIFACTDARAR-------QLL-------EACRRAGIAVPEEVAVLGVDNDE 210 (265)
T ss_pred CCcEEEecChHHHH-------HHH-------HHHHHhCCCCCCceEEEeeCCch
Confidence 25677776654322 122 34444565 3457766655443
No 115
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.04 E-value=2e+02 Score=27.80 Aligned_cols=62 Identities=21% Similarity=0.377 Sum_probs=37.5
Q ss_pred CeEEEecCC-----HHHHHHHHhcCCEEEEeeCCCCcccccCCHHHHHHHHHhhccccCCCCeEEEEEeccce
Q 012262 58 QKLRLYGAD-----PAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEV 125 (467)
Q Consensus 58 ~~VRiY~~d-----~~vl~A~~~tgi~V~lGv~~~~~~~~a~~~~~a~~Wv~~~v~~~~p~~~I~~I~VGNEv 125 (467)
-+++|||+- ..+.++....-+.++|..-.....++ .....|++ +|..+.+. .+.-|.|||-.
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHHH-HHHhhCCC-CCcEEEeeccc
Confidence 456788876 46677765444444444433333444 34556865 47777553 68889999965
Done!