BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012264
(467 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54I39|IST1L_DICDI IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3
SV=1
Length = 369
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 13 IFLFFKKFNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEH 72
+F F ++S K K K+AV+RI++L+NK+ +VR +R++A LL+ K + +ARIRVE
Sbjct: 1 MFGFGPSYDSYKLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVET 60
Query: 73 VIREQNVLAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGA 132
+IR++ ++ + IE+ CEL+ AR+++I E P ++KE I ++++++ R +IPEL
Sbjct: 61 IIRDEYLIECFQIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQRI-QIPELEQ 119
Query: 133 IRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDW 191
I++ + KYGK + A + ++ VN ++ KLS TP + + + EIA++F +DW
Sbjct: 120 IKNQLKAKYGKGLENEA-NCHCSTHVNPKIVHKLSYATPDPSIIFQTLSEIAEKFNVDW 177
>sp|P53990|IST1_HUMAN IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1
Length = 364
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q568Z6|IST1_RAT IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1
Length = 366
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q9CX00|IST1_MOUSE IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1
Length = 362
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q5R6G8|IST1_PONAB IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1
Length = 364
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
F + + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 FKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K + R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKGYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|Q3ZBV1|IST1_BOVIN IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1
Length = 364
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 20 FNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNV 79
+ + + ++ + R+KLL K+ + ++ R++IA L + +D ARIRVEH+IRE +
Sbjct: 6 IKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYL 65
Query: 80 LAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFE 138
+ A E +EL+C+L++AR +I +E + L E ++++I+AAPR SE+ EL + D
Sbjct: 66 VEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLC 125
Query: 139 KKYGKDFVSAATDLRPN--SGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWD 192
KY K++ R N VN L+ KLSV P + + + EIAK + + ++
Sbjct: 126 AKYSKEYGKLC---RTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYE 178
>sp|P53843|IST1_YEAST Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IST1 PE=1
SV=1
Length = 298
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 10/178 (5%)
Query: 22 SSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLA 81
+ K KT KM + R++ + K++A+ +Q RR +A LL + ++ A RVE +I + +
Sbjct: 9 TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIE 68
Query: 82 ANEFIELFCELIVARLSIIAK--------RRECPADLKEGIASVIFAAPRCSEIPELGAI 133
E +EL+CEL++AR+ +I + + E I S+I+A E+ EL +
Sbjct: 69 LLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQL 128
Query: 134 RDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDW 191
+D+ K +FV+ + + V +I+K S P E+ +KEIAK + + +
Sbjct: 129 KDLMAWKINVEFVNGV--IADHIDVPEKIIKKCSPSVPKEELVDLYLKEIAKTYDVPY 184
>sp|O74490|IST1_SCHPO Vacuolar protein sorting-associated protein ist1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ist1 PE=3 SV=1
Length = 271
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAA 82
S+ + K+A +RI++LR K EA+ +Q RR++AL L+S A A+ R+E +I + +
Sbjct: 2 SRLQIQLKLAASRIEILRQKEEALAKQARRNVALGLKSYSPALAKARIEPLIMQDIYIEL 61
Query: 83 NEFIELFCELIVARLSIIAKRR-ECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKY 141
E +++ E++ R ++ KR K + V+ AAP+ +I EL + D K Y
Sbjct: 62 LELLQVDVEILANRCVVLEKRAFNDSMSFKSSLYHVMAAAPQL-QIKELRFVHDFLVKLY 120
Query: 142 GKDF 145
GK+F
Sbjct: 121 GKEF 124
>sp|Q8U1S6|CMR2_PYRFU CRISPR system Cmr subunit Cmr2 OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=cmr2 PE=1 SV=1
Length = 871
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 134 RDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTGEVKLKVMKEIAKEFQIDWDT 193
R IF++KYGKD VS A ++ + + ML++ + T E L K++ + +ID +
Sbjct: 515 RKIFDEKYGKDLVSKAREVSEDFVKDNMLVDSDLYYSSTWESGLS--KKLKNKKEIDEEK 572
Query: 194 TESEMELLKPAEERIGGPDTFFS 216
+ ++ L A + IG P +++
Sbjct: 573 VKEVVDFLNAAYKEIGNPPKYYA 595
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,780,079
Number of Sequences: 539616
Number of extensions: 7157382
Number of successful extensions: 27964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 27879
Number of HSP's gapped (non-prelim): 118
length of query: 467
length of database: 191,569,459
effective HSP length: 121
effective length of query: 346
effective length of database: 126,275,923
effective search space: 43691469358
effective search space used: 43691469358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)