Query 012264
Match_columns 467
No_of_seqs 177 out of 314
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frr_A Uncharacterized protein 100.0 1.1E-65 3.7E-70 482.0 22.5 183 15-198 3-186 (191)
2 3ggy_A Increased sodium tolera 100.0 6.1E-61 2.1E-65 450.5 20.1 174 18-194 6-187 (193)
3 2gd5_A Charged multivesicular 90.5 1.7 5.8E-05 39.5 10.2 121 23-148 13-133 (179)
4 3frt_A Charged multivesicular 87.5 8.5 0.00029 36.7 13.0 120 23-147 13-132 (218)
5 1t98_A KICB protein, chromosom 75.0 22 0.00077 35.0 10.9 79 23-102 158-238 (287)
6 3jyw_M 60S ribosomal protein L 66.3 4.3 0.00015 37.8 3.7 24 250-273 142-165 (178)
7 1l9l_A Granulysin; saposin fol 65.8 18 0.00063 28.6 6.8 63 89-163 6-69 (74)
8 3euh_A Protein KICB, chromosom 58.0 39 0.0013 35.4 9.2 80 23-103 158-239 (440)
9 2gtg_A Proactivator polypeptid 50.7 64 0.0022 24.9 7.6 64 89-163 9-73 (83)
10 1nkl_A NK-lysin; saposin fold, 43.7 36 0.0012 26.6 5.1 64 89-163 6-69 (78)
11 3bqp_A Proactivator polypeptid 41.1 79 0.0027 23.8 6.6 64 89-163 7-71 (80)
12 3cay_A LPD-12; alpha helix, ac 38.4 32 0.0011 22.7 3.2 19 258-276 4-22 (27)
13 2xze_A STAM-binding protein; h 34.4 1.3E+02 0.0044 26.6 7.7 73 71-148 48-121 (146)
14 1n69_A Saposin B; lipid bindin 31.8 1.1E+02 0.0037 23.8 6.2 55 88-148 7-63 (81)
15 3h8k_B Autocrine motility fact 26.7 74 0.0025 21.5 3.6 23 32-54 3-25 (28)
16 1abv_A Delta subunit of the F1 24.3 1.1E+02 0.0038 25.5 5.3 57 72-143 78-134 (134)
17 2vxg_A LD41624, GE-1, CG6181-P 24.0 44 0.0015 29.7 2.8 40 50-96 3-42 (139)
18 3us6_A Histidine-containing ph 22.3 1.5E+02 0.0051 26.1 5.9 56 48-103 4-63 (153)
19 3s0r_A De novo designed helica 21.8 1.3E+02 0.0043 20.3 3.9 24 253-276 5-28 (30)
20 2qyp_A Proactivator polypeptid 21.3 90 0.0031 24.7 3.9 58 88-151 9-67 (91)
21 2rr3_B OSBP, oxysterol-binding 21.1 1E+02 0.0034 23.0 3.7 37 403-446 9-45 (47)
No 1
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=100.00 E-value=1.1e-65 Score=481.99 Aligned_cols=183 Identities=32% Similarity=0.573 Sum_probs=178.5
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012264 15 LFFKKFNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIV 94 (467)
Q Consensus 15 lf~~~f~~sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ARIRVE~LIrED~~ieayEILElYCELLl 94 (467)
||+++||++|||++||||++||++||+||+++++++|||||+||++|++++|||||||||+||+++++|||||+|||+|+
T Consensus 3 mf~~~~~~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~ 82 (191)
T 3frr_A 3 MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLL 82 (191)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhhccCCCChhHHHHHHHHHhhCCCC-CCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCCCCCH
Q 012264 95 ARLSIIAKRRECPADLKEGIASVIFAAPRC-SEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVRTPTG 173 (467)
Q Consensus 95 aRl~lIek~KeCP~eLkEAIsSLIfAApR~-sDlPEL~~LR~~f~~KYGKeFv~aA~Elr~~~~VN~kIi~KLSv~~Ps~ 173 (467)
+|+++|+++++||+||+|||+||||||||| +|||||.+||++|+.|||++|+.+|++|++++ ||++|++||++.+|+.
T Consensus 83 ~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~-Vn~~iv~kLs~~~P~~ 161 (191)
T 3frr_A 83 ARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGT-VNDRLMHKLSVEAPPK 161 (191)
T ss_dssp HTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSC-SCHHHHHHTCCSCCCH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCC-cCHHHHHHcCCCCcCH
Confidence 999999999999999999999999999998 89999999999999999999999999999765 9999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhHH
Q 012264 174 EVKLKVMKEIAKEFQIDWDTTESEM 198 (467)
Q Consensus 174 elv~kyL~EIAkEy~I~wdp~~~e~ 198 (467)
++|++||+|||++|||+|+|+++-.
T Consensus 162 ~lv~~yL~EIA~~y~V~w~p~~~~~ 186 (191)
T 3frr_A 162 ILVERYLIEIAKNYNVPYEPDSVVM 186 (191)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhh
Confidence 9999999999999999999987654
No 2
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=100.00 E-value=6.1e-61 Score=450.51 Aligned_cols=174 Identities=30% Similarity=0.493 Sum_probs=168.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhH
Q 012264 18 KKFNSSKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARL 97 (467)
Q Consensus 18 ~~f~~sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ARIRVE~LIrED~~ieayEILElYCELLlaRl 97 (467)
.+| .+|||++||||++||+++|+||+++++++|||||+||++|++++|||||||||+||+++++|||||+|||+|++|+
T Consensus 6 ~~~-~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~ 84 (193)
T 3ggy_A 6 IPF-TIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARV 84 (193)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc--------cCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHHhhcCCC
Q 012264 98 SIIAK--------RRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLIEKLSVR 169 (467)
Q Consensus 98 ~lIek--------~KeCP~eLkEAIsSLIfAApR~sDlPEL~~LR~~f~~KYGKeFv~aA~Elr~~~~VN~kIi~KLSv~ 169 (467)
++|++ +++||++|+|||+|||||||||+|||||.+||++|+.|||++|+.+|++|. ++||++|++||++.
T Consensus 85 ~ll~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~--~gVn~kiv~kLs~~ 162 (193)
T 3ggy_A 85 QVINDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADH--IDVPEKIIKKCSPS 162 (193)
T ss_dssp HHHTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHC--TTCCHHHHHHHSCC
T ss_pred HHHHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcC--CCCCHHHHHHcCCC
Confidence 99999 699999999999999999999999999999999999999999999999995 56999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCc
Q 012264 170 TPTGEVKLKVMKEIAKEFQIDWDTT 194 (467)
Q Consensus 170 ~Ps~elv~kyL~EIAkEy~I~wdp~ 194 (467)
+|+.++|++||+|||++|||+|++-
T Consensus 163 ~P~~elv~~yL~EIA~ey~V~w~~~ 187 (193)
T 3ggy_A 163 VPKEELVDLYLKEIAKTYDVPYSKL 187 (193)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999999864
No 3
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=90.52 E-value=1.7 Score=39.55 Aligned_cols=121 Identities=11% Similarity=0.121 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhc
Q 012264 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAK 102 (467)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ARIRVE~LIrED~~ieayEILElYCELLlaRl~lIek 102 (467)
-+++..|+-++..|.--.+|-+..-++...+|-+.++.|+.+.|+|.+..+|+--+...=|--+..-.+-+..|+..+..
T Consensus 13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~ 92 (179)
T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999999999999999999999999999999999999999999888744443333334444444443332
Q ss_pred cCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHH
Q 012264 103 RRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSA 148 (467)
Q Consensus 103 ~KeCP~eLkEAIsSLIfAApR~sDlPEL~~LR~~f~~KYGKeFv~a 148 (467)
....-..++.+ +-++=+.-+.-++|++..+=.-| .++|...
T Consensus 93 ~~~v~~am~~~-~~~M~~~n~~m~l~~i~~~M~e~----~~e~~~~ 133 (179)
T 2gd5_A 93 VLRVAGSLQKS-TEVMKAMQSLVKIPEIQATMREL----SKEMMKA 133 (179)
T ss_dssp HHHHTSSCCCC-SHHHHTTTSSTTSSSCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHH----HHHHHHH
Confidence 22221122211 12233333434888887665554 4555443
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=87.50 E-value=8.5 Score=36.69 Aligned_cols=120 Identities=10% Similarity=0.115 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhc
Q 012264 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAK 102 (467)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ARIRVE~LIrED~~ieayEILElYCELLlaRl~lIek 102 (467)
-+|+..|+-++--|.--.++-+..-++...+|-+..+.|+.+.|||=+..|||--+...=|--+---.+-+.-|+...-.
T Consensus 13 r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s 92 (218)
T 3frt_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLA 92 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999988777777777777777776665
Q ss_pred cCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHH
Q 012264 103 RRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVS 147 (467)
Q Consensus 103 ~KeCP~eLkEAIsSLIfAApR~sDlPEL~~LR~~f~~KYGKeFv~ 147 (467)
...+-..+..+ +.++=..-+.-++|+|..+=.-| .++|..
T Consensus 93 ~~~v~~sM~~s-t~~M~~~n~~m~l~~i~~tM~ef----ekE~~k 132 (218)
T 3frt_A 93 VLRVAGSLQKS-TEVMKAMQSLVKIPEIQATMREL----SKEMMK 132 (218)
T ss_dssp CC----CCCCC-HHHHHHHHHSTTSHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHH----HHHHHH
Confidence 54444333332 22333333444899988765554 566655
No 5
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=74.98 E-value=22 Score=35.02 Aligned_cols=79 Identities=20% Similarity=0.178 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhHhhh
Q 012264 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQ--NVLAANEFIELFCELIVARLSII 100 (467)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ARIRVE~LIrED--~~ieayEILElYCELLlaRl~lI 100 (467)
.-+|-.+.-...+|.+-|+-..++..+.+.|||.||.+. .-.|-..+|+|+.|- .+-|+-|.|+---+-|.+.+--|
T Consensus 158 apLkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~LL~qD-W~~AI~~CE~LL~eTs~tLRELqDtL~aagd~lqa~Ll~I 236 (287)
T 1t98_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 (287)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 457777778889999999999999999999999999987 677999999999974 67899999999999998888777
Q ss_pred hc
Q 012264 101 AK 102 (467)
Q Consensus 101 ek 102 (467)
+.
T Consensus 237 Q~ 238 (287)
T 1t98_A 237 QD 238 (287)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 6
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=66.32 E-value=4.3 Score=37.80 Aligned_cols=24 Identities=46% Similarity=0.375 Sum_probs=16.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q 012264 250 QFEDTASAAEAAADSAKKAVAAAQ 273 (467)
Q Consensus 250 ~~~Da~~AA~AA~eSA~~Aa~AAr 273 (467)
+|.|+.+||.||+..|+-|++||-
T Consensus 142 k~~~~~~~~~~~~~~~~~~~~~~~ 165 (178)
T 3jyw_M 142 KAAAAAAAAAAAAAAAAAAAAAAA 165 (178)
T ss_dssp CCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 899998888777666555444433
No 7
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=65.75 E-value=18 Score=28.60 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=45.5
Q ss_pred HHHHHHHhHhhhhccCCCChhHHHHHHHHHhhCCCCCCchh-HHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHH
Q 012264 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPE-LGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLI 163 (467)
Q Consensus 89 YCELLlaRl~lIek~KeCP~eLkEAIsSLIfAApR~sDlPE-L~~LR~~f~~KYGKeFv~aA~Elr~~~~VN~kIi 163 (467)
.|++++..+.-+= ...=-.++++++..+ |+-+|- |....+.|+.+||...+..-+. ..+|+.|
T Consensus 6 ~C~~~v~~le~~l-~n~Te~~I~~~L~~v------C~~l~~~~~~~C~~~V~~y~~~Ii~~L~~-----~~~P~~I 69 (74)
T 1l9l_A 6 TCLTIVQKLKKMV-DKPTQRSVSNAATRV------CRTGRSRWRDVCRNFMRRYQSRVIQGLVA-----GETAQQI 69 (74)
T ss_dssp HHHHHHHHHHHHC-SSCCHHHHHHHHHHG------GGSSCHHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHH
T ss_pred HHHHHHHHHHHHh-cccCHHHHHHHHHHH------HHhCChHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHH
Confidence 5888888887655 444455666666554 467787 9999999999999999876543 3566654
No 8
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=58.03 E-value=39 Score=35.39 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhHhhh
Q 012264 23 SKCKTAAKMAVARIKLLRNKREAVVRQMRRDIALLLQSKQDATARIRVEHVIREQ--NVLAANEFIELFCELIVARLSII 100 (467)
Q Consensus 23 sKcKt~LKLAisRLklLqnKr~a~~kq~RrDIAqLL~~Gk~e~ARIRVE~LIrED--~~ieayEILElYCELLlaRl~lI 100 (467)
.-+|-.++-...+|.+-|+--.++..+.|.|||.||.+. ...|-..+|+++.|- .+-|+-+.|+.=-+-|.+.+-.|
T Consensus 158 ~~LkySVaeifd~Idl~QR~mDeQQ~~vk~eIA~LL~~d-W~~AI~~Ce~LL~Ets~tLRELqdtL~aagD~lq~qLl~I 236 (440)
T 3euh_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKD-WRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRI 236 (440)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 568888999999999999999999999999999999887 677999999999974 57788889999999999888888
Q ss_pred hcc
Q 012264 101 AKR 103 (467)
Q Consensus 101 ek~ 103 (467)
+..
T Consensus 237 Q~~ 239 (440)
T 3euh_A 237 QDA 239 (440)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 9
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=50.68 E-value=64 Score=24.90 Aligned_cols=64 Identities=19% Similarity=0.452 Sum_probs=43.7
Q ss_pred HHHHHHHhHhhhhccCCCChhHHHHHHHHHhhCCCCCCchh-HHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHH
Q 012264 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPE-LGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLI 163 (467)
Q Consensus 89 YCELLlaRl~lIek~KeCP~eLkEAIsSLIfAApR~sDlPE-L~~LR~~f~~KYGKeFv~aA~Elr~~~~VN~kIi 163 (467)
.|++++..+.-+-....--.++.+++..+ |.-+|. +......|...||..++..-.. +++|..|
T Consensus 9 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~------C~~lp~~~~~~C~~~V~~y~~~ii~~l~~-----~~~P~~i 73 (83)
T 2gtg_A 9 VCEFLVKEVTKLIDNNKTEKEILDAFDKM------CSKLPKSLSEECQEVVDTYGSSILSILLE-----EVSPELV 73 (83)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH------TTSSCHHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHH
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHH------HHHCCCcchhHHHHHHHHHHHHHHHHHHH-----CCCHHHH
Confidence 58888887766654444445566666553 456675 9999999999999999876432 4555544
No 10
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=43.67 E-value=36 Score=26.62 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=44.7
Q ss_pred HHHHHHHhHhhhhccCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHH
Q 012264 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLI 163 (467)
Q Consensus 89 YCELLlaRl~lIek~KeCP~eLkEAIsSLIfAApR~sDlPEL~~LR~~f~~KYGKeFv~aA~Elr~~~~VN~kIi 163 (467)
.|++++..+.-+-....--.+++.++..+. +-+|.|....+.|..+||...+..-.+ .++|+.|
T Consensus 6 ~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C------~~lp~~~~~C~~~V~~y~~~iI~~l~~-----~~~P~~I 69 (78)
T 1nkl_A 6 SCRKIIQKLEDMVGPQPNEDTVTQAASQVC------DKLKILRGLCKKIMRSFLRRISWDILT-----GKKPQAI 69 (78)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHH------HHSCSTHHHHHHHHHHHHHHHHHHHHT-----TCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------hhCchhHHHHHHHHHHHHHHHHHHHHH-----CCCHHHH
Confidence 477787777666545445566777766553 336669999999999999998876543 4566544
No 11
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=41.14 E-value=79 Score=23.84 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHHHHHhHhhhhccCCCChhHHHHHHHHHhhCCCCCCch-hHHHHHHHHHHHHcHHHHHHHhhcCCCCCCCHHHH
Q 012264 89 FCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIP-ELGAIRDIFEKKYGKDFVSAATDLRPNSGVNRMLI 163 (467)
Q Consensus 89 YCELLlaRl~lIek~KeCP~eLkEAIsSLIfAApR~sDlP-EL~~LR~~f~~KYGKeFv~aA~Elr~~~~VN~kIi 163 (467)
.|+.++..+.-+-....--.++.+++..+.- -+| .+....+.|...||..++.... .+++|..|
T Consensus 7 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~------~lp~~~~~~C~~~v~~y~~~ii~~l~-----~~~~P~~i 71 (80)
T 3bqp_A 7 VCKKLVGYLDRNLEKNSTKQEILAALEKGCS------FLPDPYQKQCDQFVAEYEPVLIEILV-----EVMDPSFV 71 (80)
T ss_dssp HHHHHHHHHHHHSCTTCCHHHHHHHHHHHGG------GSCGGGHHHHHHHHHHHHHHHHHHHT-----TCCCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------hCCCccchhhHHHHHHHHHHHHHHHH-----HCCCHHHH
Confidence 5788887776665544334556666655432 344 3899999999999999987653 24566544
No 12
>3cay_A LPD-12; alpha helix, acyl chains, detergent, amphiphilic, lipopeptide, SELF-assembling peptide, de novo protein; HET: O12 LMT; 1.20A {Synthetic} PDB: 3cba_A*
Probab=38.37 E-value=32 Score=22.71 Aligned_cols=19 Identities=58% Similarity=0.515 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012264 258 AEAAADSAKKAVAAAQAAA 276 (467)
Q Consensus 258 A~AA~eSA~~Aa~AArAAa 276 (467)
|+||-..|.+|+.||.-|+
T Consensus 4 aeaaekaakyaaeaaekaa 22 (27)
T 3cay_A 4 AEAAEKAAKYAAEAAEKAA 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665444
No 13
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=34.39 E-value=1.3e+02 Score=26.59 Aligned_cols=73 Identities=14% Similarity=0.236 Sum_probs=50.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhccCCCC-hhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcHHHHHH
Q 012264 71 EHVIREQNVLAANEFIELFCELIVARLSIIAKRRECP-ADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGKDFVSA 148 (467)
Q Consensus 71 E~LIrED~~ieayEILElYCELLlaRl~lIek~KeCP-~eLkEAIsSLIfAApR~sDlPEL~~LR~~f~~KYGKeFv~a 148 (467)
+....+.+...||-++--||.|++..++-=-.-+.+. ++-+..+..|. .. -+++|-.|+..|..+|-+++..-
T Consensus 48 ~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~----~~-~~~~lE~LK~~L~~rY~~e~~~~ 121 (146)
T 2xze_A 48 SIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLK----EI-AFPKAEELKAELLKRYTKEYTEY 121 (146)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHH----HT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHH----HH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677778888899999987766432222222 45666666655 21 38999999999999999988653
No 14
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=31.79 E-value=1.1e+02 Score=23.78 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHhHh-hhhccCCCChhHHHHHHHHHhhCCCCCCch-hHHHHHHHHHHHHcHHHHHH
Q 012264 88 LFCELIVARLS-IIAKRRECPADLKEGIASVIFAAPRCSEIP-ELGAIRDIFEKKYGKDFVSA 148 (467)
Q Consensus 88 lYCELLlaRl~-lIek~KeCP~eLkEAIsSLIfAApR~sDlP-EL~~LR~~f~~KYGKeFv~a 148 (467)
..|++++..+. +|.+.+.--.++++++-.+ |.-+| .+....+.|..+||..+...
T Consensus 7 ~~C~~~V~~ve~~l~~n~t~~~~I~~~l~~~------C~~lp~~~~~~C~~~V~~y~~~ii~~ 63 (81)
T 1n69_A 7 QDCIQMVTDIQTAVRTNSTFVQALVEHVKEE------CDRLGPGMADICKNYISQYSEIAIQM 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH------GGGGCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 35888888887 5554322114455554443 34555 69999999999999966643
No 15
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=26.71 E-value=74 Score=21.46 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012264 32 AVARIKLLRNKREAVVRQMRRDI 54 (467)
Q Consensus 32 AisRLklLqnKr~a~~kq~RrDI 54 (467)
+-.|-.+||++|..++.++|+=.
T Consensus 3 ~~eRq~~Lq~Rk~~mi~~ARrry 25 (28)
T 3h8k_B 3 ADERQRMLVQRKDELLQQARKRF 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999843
No 16
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=24.31 E-value=1.1e+02 Score=25.48 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhHhhhhccCCCChhHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHcH
Q 012264 72 HVIREQNVLAANEFIELFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPELGAIRDIFEKKYGK 143 (467)
Q Consensus 72 ~LIrED~~ieayEILElYCELLlaRl~lIek~KeCP~eLkEAIsSLIfAApR~sDlPEL~~LR~~f~~KYGK 143 (467)
-|+....+-.+-+|++.|-++..++-+++. +.|+.|.|= +=.++..|.+.|..+||+
T Consensus 78 ll~~~~Rl~~l~~I~~~f~~l~~~~~~~~~-------------a~V~SA~~L--s~~q~~~l~~~L~~~~gk 134 (134)
T 1abv_A 78 VMAENGRLNALPDVLEQFIHLRAVSEATAE-------------VDVISAAAL--SEQQLAKISAAMEKRLSR 134 (134)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHCCeeE-------------EEEEecCCC--CHHHHHHHHHHHHHHhCc
Confidence 355555555666677777766666666554 455555543 345777888888888885
No 17
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=23.98 E-value=44 Score=29.67 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 012264 50 MRRDIALLLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVAR 96 (467)
Q Consensus 50 ~RrDIAqLL~~Gk~e~ARIRVE~LIrED~~ieayEILElYCELLlaR 96 (467)
.|.+|.+||+.|+++.|..++=+- .| .+++.-+|.-+--.
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~aL~s--sd-----~~lv~~lc~~~dp~ 42 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQALLA--ND-----LGLVEFTLRHTDSN 42 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT--TC-----HHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHh--Cc-----HHHHHHHHHcCCHH
Confidence 467899999999999999996332 11 11666677655433
No 18
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=22.26 E-value=1.5e+02 Score=26.06 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=41.7
Q ss_pred HHHHHHHHH----HHhcCchhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhhhcc
Q 012264 48 RQMRRDIAL----LLQSKQDATARIRVEHVIREQNVLAANEFIELFCELIVARLSIIAKR 103 (467)
Q Consensus 48 kq~RrDIAq----LL~~Gk~e~ARIRVE~LIrED~~ieayEILElYCELLlaRl~lIek~ 103 (467)
.++++.|+. |...|-.+...-+++.+..+++---+-++|++|++-.-.++..|...
T Consensus 4 ~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~a 63 (153)
T 3us6_A 4 GQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFA 63 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 45568777667777788666677677899999999998888888754
No 19
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=21.85 E-value=1.3e+02 Score=20.35 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 012264 253 DTASAAEAAADSAKKAVAAAQAAA 276 (467)
Q Consensus 253 Da~~AA~AA~eSA~~Aa~AArAAa 276 (467)
.+.+-||.|.|-|.-|-.|||-|.
T Consensus 5 saleyaqqalekaqlalqaarqal 28 (30)
T 3s0r_A 5 SALEYAQQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355668888898888888888875
No 20
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=21.28 E-value=90 Score=24.65 Aligned_cols=58 Identities=14% Similarity=0.338 Sum_probs=37.3
Q ss_pred HHHHHHHHhHhhhhccCCCChhHHHHHHHHHhhCCCCCCchh-HHHHHHHHHHHHcHHHHHHHhh
Q 012264 88 LFCELIVARLSIIAKRRECPADLKEGIASVIFAAPRCSEIPE-LGAIRDIFEKKYGKDFVSAATD 151 (467)
Q Consensus 88 lYCELLlaRl~lIek~KeCP~eLkEAIsSLIfAApR~sDlPE-L~~LR~~f~~KYGKeFv~aA~E 151 (467)
..|+.++..+.-+-....-..++.+++-.+.- -+|. +....+.|...||..++.....
T Consensus 9 ~~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~------~lp~~~~~~C~~~V~~y~~~ii~~l~~ 67 (91)
T 2qyp_A 9 EVCEFLVKEVTKLIDNNKTEKEILDAFDKMCS------KLPKSLSEECQEVVDTYGSSILSILLE 67 (91)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH------TSCSSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------HCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 35777777775544332223455555555443 3443 7888999999999999876543
No 21
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=21.11 E-value=1e+02 Score=23.03 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=22.2
Q ss_pred cCCCCCccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 012264 403 QWDESDYDEEIEVEAPSGCTSLPPERTPPPIPPSLGKQGSFHRV 446 (467)
Q Consensus 403 k~d~sd~~ee~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v 446 (467)
|=+.||+||++|-=.-+.-|+.| .+|...|..+.+|-
T Consensus 9 KGe~SdEDed~EfFDA~efITv~-------~~~k~~r~~~~~~~ 45 (47)
T 2rr3_B 9 KGDMSDEDDENEFFDAPEIITMP-------ENLGHKRTGSHHHH 45 (47)
T ss_dssp CCCSCCCCCSSCCBCCCSSCSSC-------SCCCSCCSSSCCC-
T ss_pred cccccccccccccccccceeEcc-------CCcccccccccccc
Confidence 77889989988766555545555 23444555554443
Done!