BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012265
(467 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33731|SRP72_CANFA Signal recognition particle 72 kDa protein OS=Canis familiaris
GN=SRP72 PE=1 SV=3
Length = 671
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 238/433 (54%), Gaps = 31/433 (7%)
Query: 18 DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
D + E+D + ELA I Q+AY+ QL G T+EA Y IIK D AV NN++
Sbjct: 213 DSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIIT 272
Query: 78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
+ ++V DS KK+ A ++ +LS KQ +AI N+ LL ++ N+ +Q
Sbjct: 273 INKDQNVFDSKKKVKLTN---------AEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323
Query: 138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197
R++ A+L P+ ++P+L+QAA L RE + KA ELL +F+++ P+ + I L AQ+
Sbjct: 324 RKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383
Query: 198 AAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
+ + A L I +++H P V+ LV + DID A V AI+W+ N +
Sbjct: 384 ISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKS 443
Query: 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYE 316
+ +++EAA+FKL++GR+++A E+L K + I L L++ + VD +KA++
Sbjct: 444 SAHLSLIREAANFKLKYGRKKEAISDLEQLWKQNPKDIHTLAQLISAYSLVDPEKAKALS 503
Query: 317 KRLKPLPGLN-GVDVDSLEKTSGAKHVESASYFEVNEA----HGEGKNKDKAKKKRKRKP 371
K L ++ VDV++LE + GA ++ ++ G+G D KKK+K+K
Sbjct: 504 KHLPSSDSMSLKVDVEALENSPGATYIRKKGGKVAGDSQPKEQGQG---DLKKKKKKKKG 560
Query: 372 RYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQV-RGSQGAVVREKHDAGAAG 430
+ PK +DP PDPERWLP RERS YR R+K K+ Q+ +G+QGA AG
Sbjct: 561 KLPKNYDPK---VTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGAT---------AG 608
Query: 431 ASSNSTSSQATSS 443
ASS +S+ SS
Sbjct: 609 ASSELDASKTVSS 621
>sp|O76094|SRP72_HUMAN Signal recognition particle 72 kDa protein OS=Homo sapiens GN=SRP72
PE=1 SV=3
Length = 671
Score = 198 bits (504), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 238/433 (54%), Gaps = 31/433 (7%)
Query: 18 DDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77
D + E+D + ELA I Q+AY+ QL G T+EA Y IIK D AV NN++
Sbjct: 213 DTDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIIT 272
Query: 78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQA 137
+ ++V DS KK+ A ++ +LS KQ +AI N+ LL ++ N+ +Q
Sbjct: 273 INKDQNVFDSKKKVKLTN---------AEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQC 323
Query: 138 RELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197
R++ A+L P+ ++P+L+QAA L RE + KA ELL +F+++ P+ + I L AQ+
Sbjct: 324 RKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLK 383
Query: 198 AAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257
+ + A L I +++H P V+ LV + DID A V AI+W+ N +
Sbjct: 384 ISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKS 443
Query: 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYE 316
+++EAA+FKL++GR+++A ++L K + I L L++ + VD +KA++
Sbjct: 444 PAHLSLIREAANFKLKYGRKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALS 503
Query: 317 KRLKPLPGLN-GVDVDSLEKTSGAKHVESASYFEVNEA----HGEGKNKDKAKKKRKRKP 371
K L ++ VDV++LE ++GA ++ ++ G+G D KKK+K+K
Sbjct: 504 KHLPSSDSMSLKVDVEALENSAGATYIRKKGGKVTGDSQPKEQGQG---DLKKKKKKKKG 560
Query: 372 RYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDKRAAQV-RGSQGAVVREKHDAGAAG 430
+ PK +DP PDPERWLP RERS YR R+K K+ Q+ +G+QGA AG
Sbjct: 561 KLPKNYDPK---VTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGAT---------AG 608
Query: 431 ASSNSTSSQATSS 443
ASS +S+ SS
Sbjct: 609 ASSELDASKTVSS 621
>sp|Q54EP7|SRP72_DICDI Signal recognition particle 72 kDa protein homolog OS=Dictyostelium
discoideum GN=srp72 PE=3 SV=1
Length = 672
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 123/457 (26%), Positives = 207/457 (45%), Gaps = 78/457 (17%)
Query: 10 RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69
+I ++L D F+E++I+ E I VQL YVQQ+ GN +++ Y +++++ + D ++
Sbjct: 202 KICTDSLKKDGFSEEEIKEEQTSIDVQLGYVQQICGNLEKSLEQYQNVLEQQVGDSATL- 260
Query: 70 VAVNNLVALKG----------PKDVN---DSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 116
VA NN ++++ PK+ DSLK L L RL+ KQ
Sbjct: 261 VATNNSISVRSILQSDQWSTQPKEYTHAMDSLKSL------------LTEAESTRLNSKQ 308
Query: 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL---------LLQAAVLVRENK 167
++ I N LLL+ K+ Q EL+ L + + ++Q ++L++E K
Sbjct: 309 KKVINYNLCLLLVQLKKVSQCEELIKTLKSKYGQQQQQVDTSFVEDLDIIQVSLLIKEKK 368
Query: 168 AGKAEELL-------GQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKI-PDIQHM 219
AE+LL G +L ++I LL VA A N L K+ +
Sbjct: 369 FKDAEKLLLKNNTTTGSIKSQLL-LAQIYLLDNNNVAKALN-------VLEKLDSSVSLR 420
Query: 220 PATVATLVALKERAGDIDGAAAVLDSAIKWW--LNAMTEDNKLSV-IMQEAASFKLRHGR 276
P VAT VAL E++GD++ A LD I + +D ++ V +++ + +FKL+H +
Sbjct: 421 PGIVATKVALYEKSGDLEKAVNSLDDLISIFDKQKKSEKDEEIYVNLLKASGNFKLKHHK 480
Query: 277 EEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEK 335
+AS +F+ ++K + + AL + ++H D ++ YE +L + + +D+D +EK
Sbjct: 481 YREASDMFDRVLKINPNDLIALPSYIVATSHFDPSLSQKYEGKLPNIKFESKIDIDLIEK 540
Query: 336 TSGAKHVESASYFEVNEAHGEGKN---------------KDKAKKKRKRKPRYPKGFDPA 380
FE E N K A + K K K
Sbjct: 541 YGLT--------FEKKLNLNEDSNSSSPTTTTTTTTKSTKPTATEVVKIKKSKKKLPKVM 592
Query: 381 NPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQG 417
P PDP RWLPK +R++ + R K ++G QG
Sbjct: 593 KPNYVPDPGRWLPKWQRANAKAARSKKNKDIIKGPQG 629
>sp|P49965|SRP72_SCHMA Signal recognition particle 72 kDa protein OS=Schistosoma mansoni
GN=SRP72 PE=3 SV=1
Length = 707
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 199/463 (42%), Gaps = 88/463 (19%)
Query: 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLK 89
LAPI VQ AY+ QL +EA Y +I++ +D + AVA NN+V + +++ DS K
Sbjct: 220 LAPIRVQRAYILQLNKEEEEANQVYQSVIRQRASDPALLAVAANNIVCINQDQNIFDSRK 279
Query: 90 KLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP 149
RIK Q +L +QR + N+ L + N+M+ A L +
Sbjct: 280 ---RIKMASTDGLQF------KLFSRQRTDMLINQALFYWYTNQMEAC---TAKLRTVSQ 327
Query: 150 DSVMP--LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI---ILLARAQVA---AAAN 201
+ + P LLL A L++E KA LL + S+I I LA AQ+ +AN
Sbjct: 328 EELSPRALLLSATQLIKEKNVDKAVLLLQSYLSNFAG-SQIDAEIPLALAQLNLRRTSAN 386
Query: 202 H----------PFIAAESLAKI--PDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249
+ A+ L I + H P ++T +AL A + A ++K
Sbjct: 387 NLGTGSPQPKNALNVAQMLENILPQHLIHSPGVLSTRIALYLLASSGENAVQTRPDSMKQ 446
Query: 250 WLNA----------MTEDNKL-SVIMQEAASFKLRHGREEDASHLFE-ELVKTHGSI--- 294
+N + E N++ S ++ A+F L+ G + A+ L E +L + +I
Sbjct: 447 IVNCIESTLHYYEELGEQNEIYSHLLDNCAAFLLQQGEAKLAAELLEKQLARLESNICQE 506
Query: 295 -------EALVG-LVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLEKT--SGAKHVES 344
+ LV LV A D KAE K L+ L+ DVD+LE T GAK ++
Sbjct: 507 KQNSLIKQVLVARLVRAYAQFDRPKAEQTCKSLQAKESLSEADVDTLETTFLYGAKSLK- 565
Query: 345 ASYFEVNEAHGEGKNKDKAKKKRKRKPR----YPKGFDPA-------------------- 380
+ + DK K KR + + P DP
Sbjct: 566 ----RLGKPSEPTDTSDKGKSKRSQIKKSISDIPSSEDPGAQPVISRPKRKKRKVRLPKN 621
Query: 381 -NPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGAVVRE 422
PG PDP RWLP+RER+ YR +R+DKR A RG QG + E
Sbjct: 622 YQPGVMPDPNRWLPRRERTHYRGKRRDKRFAPTRGPQGQITGE 664
>sp|P91240|SRP72_CAEEL Signal recognition particle 72 kDa protein homolog
OS=Caenorhabditis elegans GN=F08D12.1 PE=3 SV=2
Length = 635
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 174/399 (43%), Gaps = 45/399 (11%)
Query: 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLD 92
I VQ AYV Q +G EA Y + N D S A NN+ A + +S K+
Sbjct: 222 IRVQKAYVLQRMGQKAEALAIYEKVQAANHPDSSVKATITNNIPAASSDFALPESRKR-- 279
Query: 93 RIKEKDMQNFQLARVLD-LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS 151
F+ A +D +L+ +QR + N L+LL +N+ + + + L F S
Sbjct: 280 ---------FKAALQIDQTKLTRRQRLTLMLNNALVLLLSNQREPCKRALEELVAKFGSS 330
Query: 152 VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA 211
L++A + K G AE L A ++S LAR V A A ++
Sbjct: 331 KDVALIEATLHF---KMGDAEAALKVLAGSDLEQS----LARLHVLLNAGRLPEAVGAIR 383
Query: 212 KIPDIQHMPAT---VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK----LSVIM 264
+P + A+ +TL+A R D A+K + A T N+ L I+
Sbjct: 384 DLPISGKLGASSLLTSTLIAADSR-----------DEAVKELVAASTAKNQTPEALKSIL 432
Query: 265 QEAASFKLRHGREEDASHLFEELV-KTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLP 323
++ + + G E A+ E+LV K ++ LV + D KAES +L P
Sbjct: 433 EDLVEVEQQRGNETAATKHLEKLVEKFPEDLQLQCRLVGAYSKTDPKKAESLSAKLFPET 492
Query: 324 GLNGVDVDSLEKTS----GAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDP 379
V+VD LE + G K+ + A K K KRKRK R PK +
Sbjct: 493 MEVDVNVDELEDSDWILYGEKYRQKKEAKSPQTAEIAATRKLKIATKRKRKIRLPKNY-- 550
Query: 380 ANPGPPPDPERWLPKRERSSYRPRRKDKRAAQVRGSQGA 418
N PDPERWLP++ERS+Y+ +RK++ RG+QG+
Sbjct: 551 -NSAVTPDPERWLPRQERSTYKRKRKNREREIGRGTQGS 588
>sp|O59787|SRP72_SCHPO Signal recognition particle subunit srp72 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=srp72 PE=3 SV=1
Length = 561
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 172/414 (41%), Gaps = 55/414 (13%)
Query: 17 TDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV 76
+D N + +I L + + AY+Q G+ ++A I K L DE+S A+ VNNL+
Sbjct: 173 SDSNSEDHKSQINLCRLQLFFAYLQA--GDNEKASKESLKISKDCL-DETSQAIFVNNLI 229
Query: 77 ALKGPKDVNDSLKKLDR--IKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKM 134
++ +D I +D+ L + L L+ ++++ I N LL + K
Sbjct: 230 SMS-----------IDNPYISFRDLHGTNLEKALSSLLASQKKQFI-RNLALLDMAVGKQ 277
Query: 135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKIILLA 192
R+ P+ + +L E K+ + + L + E L D I++
Sbjct: 278 RSVRKEKKRNPEE------SIYFSTILLREETKSLISPKKLPGYLENLFKSDSDNIVVAL 331
Query: 193 RAQVAAAANHPFIAAESL----------AKIPDIQHMPATVATLVALKERAGDIDGAAAV 242
+N F A S+ ++ + + P V AL + + +
Sbjct: 332 LLMQHKISNGNFRGALSIYQKLRTSLEASQSLSVLYSPGLVGLGDALHYKIQSTGFKSQL 391
Query: 243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE-------EDASHLFEELVKTHGSIE 295
L A +W + + KL + + L H E +D + ++L++ G I
Sbjct: 392 LHEAANYWRKQQSCEAKLLLCTRSL----LAHLDERAPVSTIQDDMSVIDDLLQWKGPIS 447
Query: 296 ALVGL-VTTSAHVDVDKAESYEKRLKPLPGL-NGVDVDSLEKTSGAKHVESASYFEVNEA 353
LV V ++D + +K L P L G+DVD +E + V ++ +
Sbjct: 448 ELVSCKVAALCYLDKEIESGMDKYLVPTKDLITGIDVDDIE----IRGVPVSAAIGPIKR 503
Query: 354 HGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRPRRKDK 407
E + + +KK RKR+ PK F NP PDP+RW+PKR+R++ + + K K
Sbjct: 504 SVEANSSNSSKKTRKRRKPTPKSF---NPKATPDPQRWIPKRDRTNVKIKSKGK 554
>sp|P38688|SRP72_YEAST Signal recognition particle subunit SRP72 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP72 PE=1
SV=2
Length = 640
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 386 PDPERWLPKRERSSYRPRRKDKRAAQVRG 414
PDPERWLP R+RS+YRP++K + A Q +G
Sbjct: 579 PDPERWLPLRDRSTYRPKKKQQGAKQTQG 607
>sp|Q7N8Q9|XNI_PHOLL Protein Xni OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=xni PE=3 SV=1
Length = 252
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 205 IAAESLAKIPDIQHM-PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI 263
+A S +KIP IQ + P T ATL+ ++AG +D LD + W N + + +++ I
Sbjct: 170 LAGISSSKIPGIQGIGPKTAATLL---QQAGTLDNLFQHLDQQPEKWRNKLESNQEIAFI 226
Query: 264 MQEAASFK 271
+E AS +
Sbjct: 227 SREVASLR 234
>sp|Q4KTY1|KPSH1_PINFU Serine/threonine-protein kinase H1 homolog OS=Pinctada fucata
GN=PSKH1 PE=2 SV=1
Length = 415
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 350 VNEAHGEGKNKDKAKKK--RKRKPRYPKGFDPANPGPPPDPER--WLPKRERSSYRPR-- 403
V E +NK+ ++ + R PR P DP N GPPP+ +R K+ R + PR
Sbjct: 19 VVEVFNNERNKEYNRQNPHQNRGPRDPTK-DPKNAGPPPEGQRSNRKVKKYRDKFDPRVT 77
Query: 404 -RKDKRAAQVRGSQGAVVREKH 424
+ D +A RG+ VVR +H
Sbjct: 78 AKYDIKALIGRGNFSKVVRVEH 99
>sp|Q65T15|LPOA_MANSM Penicillin-binding protein activator LpoA OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=lpoA PE=3 SV=1
Length = 574
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 129 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185
+ NK++Q RE+ D LL A VLV ENK +AE LL + + P++
Sbjct: 48 FYMNKIEQTREV--------EDQQTYKLLAARVLVTENKTAQAEALLAELTKLTPEQ 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,055,564
Number of Sequences: 539616
Number of extensions: 6979244
Number of successful extensions: 25183
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 24664
Number of HSP's gapped (non-prelim): 616
length of query: 467
length of database: 191,569,459
effective HSP length: 121
effective length of query: 346
effective length of database: 126,275,923
effective search space: 43691469358
effective search space used: 43691469358
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)