Query 012265
Match_columns 467
No_of_seqs 330 out of 1382
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2376 Signal recognition par 100.0 6.5E-78 1.4E-82 596.4 37.6 426 2-434 195-630 (652)
2 KOG4626 O-linked N-acetylgluco 99.8 3.7E-19 8E-24 178.6 18.6 252 26-304 213-466 (966)
3 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-17 3.9E-22 178.9 27.8 257 5-293 310-574 (615)
4 KOG4626 O-linked N-acetylgluco 99.8 9.2E-18 2E-22 168.7 22.8 250 27-304 248-500 (966)
5 PF08492 SRP72: SRP72 RNA-bind 99.8 9.9E-20 2.2E-24 129.2 3.8 35 365-402 25-59 (59)
6 PRK15174 Vi polysaccharide exp 99.8 1.8E-16 3.9E-21 171.5 31.0 274 4-293 91-384 (656)
7 PRK11788 tetratricopeptide rep 99.8 3.9E-16 8.5E-21 158.9 30.4 266 32-318 36-307 (389)
8 PRK15174 Vi polysaccharide exp 99.8 3.2E-16 6.9E-21 169.6 29.6 294 7-318 60-377 (656)
9 TIGR00990 3a0801s09 mitochondr 99.8 2E-16 4.4E-21 170.8 26.6 270 29-318 289-567 (615)
10 PRK11447 cellulose synthase su 99.8 7.6E-16 1.6E-20 177.1 31.5 288 5-321 285-665 (1157)
11 PRK11447 cellulose synthase su 99.7 1.5E-15 3.3E-20 174.6 32.5 288 5-319 367-697 (1157)
12 TIGR02917 PEP_TPR_lipo putativ 99.7 1.8E-15 3.8E-20 168.7 31.4 291 5-318 583-896 (899)
13 PRK11788 tetratricopeptide rep 99.7 3.8E-15 8.2E-20 151.6 30.6 261 5-301 51-322 (389)
14 TIGR02917 PEP_TPR_lipo putativ 99.7 4E-15 8.6E-20 165.8 30.3 169 116-292 123-292 (899)
15 KOG0547 Translocase of outer m 99.7 7.8E-15 1.7E-19 144.6 21.4 236 29-291 324-567 (606)
16 PRK09782 bacteriophage N4 rece 99.7 1.6E-14 3.5E-19 160.7 26.0 233 31-294 477-710 (987)
17 PRK10049 pgaA outer membrane p 99.6 1.3E-13 2.9E-18 152.0 31.0 276 34-319 119-453 (765)
18 PRK10049 pgaA outer membrane p 99.6 2.3E-13 5E-18 150.2 29.5 156 162-318 247-418 (765)
19 PRK11189 lipoprotein NlpI; Pro 99.6 2.8E-13 6.1E-18 132.9 25.9 170 119-293 99-268 (296)
20 PRK12370 invasion protein regu 99.6 1.4E-13 3.1E-18 146.5 24.1 179 132-318 318-498 (553)
21 PF13429 TPR_15: Tetratricopep 99.6 8.8E-15 1.9E-19 142.5 12.3 255 34-317 11-272 (280)
22 PF13429 TPR_15: Tetratricopep 99.6 7E-15 1.5E-19 143.2 11.5 229 32-289 45-276 (280)
23 TIGR02521 type_IV_pilW type IV 99.6 5.9E-13 1.3E-17 123.9 23.0 192 118-317 31-227 (234)
24 PRK09782 bacteriophage N4 rece 99.6 3.7E-13 8.1E-18 149.9 24.5 233 33-294 511-744 (987)
25 PRK12370 invasion protein regu 99.6 5.1E-13 1.1E-17 142.3 24.7 248 5-290 277-535 (553)
26 TIGR02521 type_IV_pilW type IV 99.6 1.5E-12 3.2E-17 121.2 24.7 202 29-291 29-233 (234)
27 KOG1126 DNA-binding cell divis 99.5 1.7E-13 3.8E-18 140.0 17.9 244 32-306 354-603 (638)
28 KOG1155 Anaphase-promoting com 99.5 1.8E-12 3.8E-17 127.5 22.5 262 31-319 262-533 (559)
29 TIGR00540 hemY_coli hemY prote 99.5 4.4E-12 9.6E-17 130.2 26.5 261 33-317 86-394 (409)
30 COG3063 PilF Tfp pilus assembl 99.5 2E-12 4.3E-17 117.1 20.3 195 118-320 35-234 (250)
31 KOG2003 TPR repeat-containing 99.5 3.1E-12 6.6E-17 125.1 23.1 290 10-318 403-718 (840)
32 PRK10747 putative protoheme IX 99.5 5.3E-12 1.1E-16 129.1 26.1 256 34-317 87-385 (398)
33 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.4E-17 134.2 16.9 255 4-293 368-623 (638)
34 TIGR03302 OM_YfiO outer membra 99.5 3.4E-12 7.4E-17 120.8 18.0 173 117-293 32-235 (235)
35 KOG1840 Kinesin light chain [C 99.4 1.5E-11 3.2E-16 126.7 23.0 253 30-290 198-479 (508)
36 PRK10747 putative protoheme IX 99.4 4.7E-11 1E-15 122.2 26.5 229 35-290 157-390 (398)
37 KOG1129 TPR repeat-containing 99.4 4.8E-12 1E-16 119.5 16.2 254 6-318 196-454 (478)
38 TIGR00540 hemY_coli hemY prote 99.4 2.9E-11 6.4E-16 124.1 23.6 147 138-290 245-399 (409)
39 KOG2376 Signal recognition par 99.4 1.5E-10 3.3E-15 117.0 27.6 70 222-291 378-447 (652)
40 KOG2002 TPR-containing nuclear 99.4 1.2E-10 2.7E-15 123.5 26.6 275 5-290 180-481 (1018)
41 KOG2002 TPR-containing nuclear 99.4 5.8E-11 1.3E-15 125.9 23.2 196 121-318 345-555 (1018)
42 PLN03218 maturation of RBCL 1; 99.4 3.4E-10 7.3E-15 127.3 30.9 187 124-318 585-779 (1060)
43 COG3063 PilF Tfp pilus assembl 99.4 5.7E-11 1.2E-15 107.7 19.7 203 27-249 31-236 (250)
44 PRK11189 lipoprotein NlpI; Pro 99.4 6E-11 1.3E-15 116.4 21.4 196 111-318 57-261 (296)
45 PLN03218 maturation of RBCL 1; 99.4 4.7E-10 1E-14 126.1 30.3 260 34-319 475-745 (1060)
46 KOG1173 Anaphase-promoting com 99.4 1.7E-10 3.8E-15 116.2 23.1 267 30-316 243-512 (611)
47 KOG1174 Anaphase-promoting com 99.4 3.5E-10 7.6E-15 110.0 24.0 241 33-301 234-512 (564)
48 KOG3060 Uncharacterized conser 99.3 8.1E-11 1.7E-15 108.0 17.8 185 120-312 54-244 (289)
49 KOG0547 Translocase of outer m 99.3 2.1E-10 4.5E-15 113.7 21.1 190 121-318 329-528 (606)
50 COG2956 Predicted N-acetylgluc 99.3 9.2E-10 2E-14 104.3 23.8 259 6-301 52-322 (389)
51 PRK14574 hmsH outer membrane p 99.3 6.1E-10 1.3E-14 122.1 26.3 184 33-237 36-220 (822)
52 cd05804 StaR_like StaR_like; a 99.3 2E-09 4.2E-14 108.2 27.7 263 34-316 46-330 (355)
53 cd05804 StaR_like StaR_like; a 99.3 1.6E-10 3.5E-15 116.1 19.4 201 28-248 3-214 (355)
54 TIGR03302 OM_YfiO outer membra 99.3 1.7E-10 3.8E-15 109.1 18.3 171 28-248 30-231 (235)
55 PRK14574 hmsH outer membrane p 99.3 2.5E-10 5.4E-15 125.2 21.3 194 119-321 35-231 (822)
56 COG2956 Predicted N-acetylgluc 99.3 4.2E-09 9.1E-14 99.9 25.4 251 35-307 39-298 (389)
57 PLN03081 pentatricopeptide (PP 99.3 7.5E-10 1.6E-14 121.5 23.7 186 125-320 297-489 (697)
58 KOG2076 RNA polymerase III tra 99.3 1.2E-09 2.6E-14 115.5 23.7 259 34-318 142-508 (895)
59 PRK10370 formate-dependent nit 99.3 3.3E-10 7.1E-15 104.4 17.4 159 124-301 22-184 (198)
60 KOG1173 Anaphase-promoting com 99.3 1.2E-09 2.5E-14 110.3 22.5 256 7-297 262-525 (611)
61 KOG0495 HAT repeat protein [RN 99.3 1.3E-09 2.8E-14 111.3 22.9 249 32-304 585-861 (913)
62 PRK15179 Vi polysaccharide bio 99.2 4.7E-10 1E-14 120.9 20.3 157 135-299 69-227 (694)
63 KOG1125 TPR repeat-containing 99.2 1.7E-10 3.6E-15 116.7 15.4 186 122-315 289-520 (579)
64 PF09976 TPR_21: Tetratricopep 99.2 3.9E-10 8.4E-15 98.6 15.9 129 119-247 12-145 (145)
65 PLN03077 Protein ECB2; Provisi 99.2 4.9E-09 1.1E-13 117.8 28.4 186 123-320 429-652 (857)
66 KOG1155 Anaphase-promoting com 99.2 7.5E-09 1.6E-13 102.3 24.7 260 5-292 278-538 (559)
67 PLN03081 pentatricopeptide (PP 99.2 3E-09 6.5E-14 116.8 23.1 180 124-317 366-552 (697)
68 COG4783 Putative Zn-dependent 99.2 1.7E-09 3.7E-14 107.8 18.4 150 117-291 305-455 (484)
69 KOG0624 dsRNA-activated protei 99.2 6.5E-09 1.4E-13 99.2 20.7 250 25-300 100-381 (504)
70 KOG1840 Kinesin light chain [C 99.1 7.8E-10 1.7E-14 114.1 15.5 197 119-315 200-431 (508)
71 KOG0495 HAT repeat protein [RN 99.1 2.3E-08 5.1E-13 102.4 25.3 266 8-293 498-785 (913)
72 PRK15179 Vi polysaccharide bio 99.1 3.2E-09 6.9E-14 114.5 19.3 132 118-250 86-218 (694)
73 KOG1125 TPR repeat-containing 99.1 1.8E-09 3.8E-14 109.4 16.1 231 35-292 289-529 (579)
74 PLN03077 Protein ECB2; Provisi 99.1 2.2E-08 4.8E-13 112.5 26.2 295 5-319 238-615 (857)
75 PRK10370 formate-dependent nit 99.1 3.5E-09 7.5E-14 97.5 16.1 119 131-250 52-174 (198)
76 COG5010 TadD Flp pilus assembl 99.1 7.6E-09 1.7E-13 95.9 17.6 171 137-316 52-225 (257)
77 KOG1129 TPR repeat-containing 99.0 5.2E-09 1.1E-13 99.3 14.3 222 3-294 237-462 (478)
78 KOG0550 Molecular chaperone (D 99.0 1.1E-08 2.4E-13 99.9 16.7 166 121-293 172-353 (486)
79 TIGR02552 LcrH_SycD type III s 99.0 7.3E-09 1.6E-13 89.0 14.1 111 139-250 4-115 (135)
80 PRK15359 type III secretion sy 99.0 6.1E-09 1.3E-13 90.9 13.3 107 139-249 14-121 (144)
81 KOG0624 dsRNA-activated protei 99.0 1.9E-07 4.1E-12 89.4 23.8 247 21-293 33-301 (504)
82 PRK15359 type III secretion sy 99.0 4.2E-09 9.1E-14 91.9 11.8 109 121-230 27-136 (144)
83 PF12569 NARP1: NMDA receptor- 99.0 6.1E-08 1.3E-12 101.1 22.0 256 32-292 39-336 (517)
84 PLN02789 farnesyltranstransfer 99.0 1.2E-07 2.7E-12 93.5 22.8 193 37-248 43-249 (320)
85 KOG4162 Predicted calmodulin-b 99.0 6.1E-08 1.3E-12 101.2 20.2 237 4-252 493-786 (799)
86 TIGR02552 LcrH_SycD type III s 98.9 1.2E-08 2.7E-13 87.5 12.4 116 173-296 4-120 (135)
87 PF13525 YfiO: Outer membrane 98.9 5.9E-08 1.3E-12 89.8 17.6 173 118-313 5-197 (203)
88 COG3071 HemY Uncharacterized e 98.9 1.3E-06 2.8E-11 85.4 26.6 257 38-315 91-383 (400)
89 KOG2076 RNA polymerase III tra 98.9 5.9E-08 1.3E-12 102.9 18.4 184 121-308 142-333 (895)
90 COG3071 HemY Uncharacterized e 98.9 3.3E-07 7E-12 89.5 22.0 190 118-311 84-312 (400)
91 PLN02789 farnesyltranstransfer 98.9 2.3E-07 5E-12 91.6 20.7 180 119-306 72-267 (320)
92 COG5010 TadD Flp pilus assembl 98.9 1E-07 2.2E-12 88.5 16.0 160 122-289 70-230 (257)
93 PF09976 TPR_21: Tetratricopep 98.9 1.2E-07 2.5E-12 82.9 15.8 118 163-288 22-145 (145)
94 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.8E-12 92.2 17.5 169 120-301 104-276 (290)
95 KOG2003 TPR repeat-containing 98.9 2.9E-07 6.4E-12 90.8 19.5 199 32-250 491-690 (840)
96 PRK10866 outer membrane biogen 98.8 3.3E-07 7.1E-12 87.1 19.6 177 120-319 34-238 (243)
97 KOG3060 Uncharacterized conser 98.8 3.1E-07 6.7E-12 84.7 18.1 128 121-249 89-220 (289)
98 KOG1174 Anaphase-promoting com 98.8 2.1E-06 4.5E-11 84.2 23.9 170 124-294 272-471 (564)
99 PRK14720 transcript cleavage f 98.8 3.3E-07 7.1E-12 100.1 20.3 193 120-316 33-281 (906)
100 KOG0548 Molecular co-chaperone 98.8 2.4E-06 5.3E-11 86.4 24.0 246 27-305 220-471 (539)
101 PRK10866 outer membrane biogen 98.8 3.9E-06 8.4E-11 79.8 23.3 184 34-288 35-239 (243)
102 KOG1156 N-terminal acetyltrans 98.7 7.8E-07 1.7E-11 91.5 19.1 243 35-304 11-263 (700)
103 COG4783 Putative Zn-dependent 98.7 1.9E-06 4.2E-11 86.3 19.8 149 149-305 303-453 (484)
104 PRK04841 transcriptional regul 98.7 1E-05 2.2E-10 91.7 28.1 172 33-214 454-639 (903)
105 PRK15363 pathogenicity island 98.7 2.4E-07 5.2E-12 80.5 11.3 106 144-250 26-133 (157)
106 PLN03088 SGT1, suppressor of 98.7 2.7E-07 5.8E-12 92.9 13.2 104 122-226 6-110 (356)
107 TIGR02795 tol_pal_ybgF tol-pal 98.7 3.1E-07 6.6E-12 76.5 11.2 97 120-216 4-105 (119)
108 KOG0548 Molecular co-chaperone 98.7 4.8E-06 1E-10 84.3 21.4 251 34-305 5-403 (539)
109 PRK14720 transcript cleavage f 98.6 1.9E-06 4.2E-11 94.3 19.3 218 29-250 29-253 (906)
110 PF04733 Coatomer_E: Coatomer 98.6 1.5E-06 3.3E-11 84.7 16.2 126 122-248 135-264 (290)
111 KOG0553 TPR repeat-containing 98.6 5.5E-07 1.2E-11 85.2 12.1 104 122-226 85-189 (304)
112 KOG4162 Predicted calmodulin-b 98.6 1.4E-05 3E-10 84.0 23.4 130 155-292 653-785 (799)
113 PF14938 SNAP: Soluble NSF att 98.6 3.3E-07 7.2E-12 89.3 11.1 194 124-317 41-258 (282)
114 PF13432 TPR_16: Tetratricopep 98.6 1.8E-07 3.9E-12 69.6 7.0 63 123-185 2-64 (65)
115 cd00189 TPR Tetratricopeptide 98.6 4.4E-07 9.5E-12 70.6 9.5 94 121-215 3-96 (100)
116 TIGR02795 tol_pal_ybgF tol-pal 98.6 7.1E-07 1.5E-11 74.2 11.1 98 153-250 3-106 (119)
117 PF12569 NARP1: NMDA receptor- 98.6 1.2E-05 2.6E-10 84.2 22.0 236 34-291 7-292 (517)
118 KOG0553 TPR repeat-containing 98.5 4.2E-07 9.2E-12 86.0 10.0 91 158-249 87-178 (304)
119 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.6E-06 3.5E-11 87.4 14.9 118 125-246 176-294 (395)
120 PF12895 Apc3: Anaphase-promot 98.5 3.1E-07 6.7E-12 72.2 7.7 81 165-246 2-84 (84)
121 KOG0550 Molecular chaperone (D 98.5 5.5E-06 1.2E-10 81.3 17.5 186 31-226 169-360 (486)
122 CHL00033 ycf3 photosystem I as 98.5 2.7E-06 5.8E-11 76.2 14.3 118 136-253 17-146 (168)
123 COG4235 Cytochrome c biogenesi 98.5 1.9E-06 4E-11 82.1 13.7 119 168-294 138-260 (287)
124 PF13525 YfiO: Outer membrane 98.5 1.1E-05 2.4E-10 74.6 18.3 178 33-281 7-198 (203)
125 PRK15363 pathogenicity island 98.5 1.2E-06 2.5E-11 76.3 10.8 97 119-216 36-132 (157)
126 PLN03088 SGT1, suppressor of 98.5 2.2E-06 4.7E-11 86.4 14.2 93 156-249 6-99 (356)
127 PF14559 TPR_19: Tetratricopep 98.5 8.3E-07 1.8E-11 66.5 8.3 64 163-227 2-66 (68)
128 KOG3081 Vesicle coat complex C 98.4 3.3E-05 7.3E-10 72.0 19.4 168 139-320 94-269 (299)
129 PF12895 Apc3: Anaphase-promot 98.4 2.6E-07 5.6E-12 72.6 4.9 81 131-213 2-84 (84)
130 PRK10803 tol-pal system protei 98.4 2.4E-06 5.2E-11 82.0 11.6 98 154-251 144-248 (263)
131 COG4105 ComL DNA uptake lipopr 98.4 6.8E-05 1.5E-09 70.1 20.2 169 119-313 35-224 (254)
132 KOG1128 Uncharacterized conser 98.4 5.3E-05 1.2E-09 79.4 21.0 194 30-250 423-617 (777)
133 PRK02603 photosystem I assembl 98.4 1.1E-05 2.3E-10 72.6 14.2 85 155-239 38-125 (172)
134 cd00189 TPR Tetratricopeptide 98.4 3.8E-06 8.3E-11 65.2 10.0 93 155-248 3-96 (100)
135 KOG3785 Uncharacterized conser 98.4 1.7E-05 3.7E-10 76.5 15.9 164 32-200 58-232 (557)
136 KOG1156 N-terminal acetyltrans 98.4 1.4E-05 3.1E-10 82.4 16.1 166 118-291 7-173 (700)
137 PF14559 TPR_19: Tetratricopep 98.3 8.7E-07 1.9E-11 66.4 5.4 68 128-196 1-68 (68)
138 PRK02603 photosystem I assembl 98.3 1.2E-05 2.7E-10 72.2 13.8 93 116-209 33-128 (172)
139 PF13432 TPR_16: Tetratricopep 98.3 1E-06 2.2E-11 65.4 5.4 60 157-217 2-61 (65)
140 PRK10803 tol-pal system protei 98.3 5.3E-06 1.1E-10 79.6 11.5 100 119-218 143-248 (263)
141 COG4235 Cytochrome c biogenesi 98.3 2.4E-05 5.3E-10 74.6 15.7 115 134-249 138-256 (287)
142 KOG1915 Cell cycle control pro 98.3 0.0001 2.2E-09 73.8 20.2 175 120-301 367-547 (677)
143 PRK04841 transcriptional regul 98.3 0.00015 3.3E-09 82.1 24.9 171 119-291 453-642 (903)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.5E-05 3.2E-10 80.5 14.5 92 122-214 204-295 (395)
145 KOG1128 Uncharacterized conser 98.2 1.9E-05 4E-10 82.7 13.2 210 33-291 400-617 (777)
146 CHL00033 ycf3 photosystem I as 98.2 2.5E-05 5.4E-10 69.9 12.6 94 117-211 34-137 (168)
147 PF13414 TPR_11: TPR repeat; P 98.2 3.2E-06 6.9E-11 63.5 5.7 61 154-215 5-66 (69)
148 KOG4340 Uncharacterized conser 98.2 5.9E-05 1.3E-09 71.4 15.2 160 34-215 47-206 (459)
149 PF13414 TPR_11: TPR repeat; P 98.2 4.5E-06 9.7E-11 62.7 6.1 65 119-183 4-69 (69)
150 KOG1070 rRNA processing protei 98.2 0.00021 4.6E-09 79.5 21.0 171 131-310 1510-1688(1710)
151 PF13371 TPR_9: Tetratricopept 98.2 1E-05 2.2E-10 61.4 8.1 64 125-188 2-65 (73)
152 COG4700 Uncharacterized protei 98.2 6.1E-05 1.3E-09 66.7 13.5 126 155-289 92-221 (251)
153 KOG4340 Uncharacterized conser 98.1 3.2E-05 6.9E-10 73.1 12.1 197 129-335 21-231 (459)
154 PF14938 SNAP: Soluble NSF att 98.1 4.6E-05 9.9E-10 74.3 13.7 157 160-318 43-221 (282)
155 COG3898 Uncharacterized membra 98.1 0.0034 7.5E-08 61.8 26.0 258 32-318 121-388 (531)
156 PRK10153 DNA-binding transcrip 98.1 0.00018 3.8E-09 75.8 18.7 140 146-294 331-486 (517)
157 COG1729 Uncharacterized protei 98.1 1.8E-05 3.9E-10 74.5 10.0 95 157-251 146-246 (262)
158 KOG1130 Predicted G-alpha GTPa 98.1 4E-05 8.6E-10 75.4 12.4 254 28-291 52-345 (639)
159 KOG1127 TPR repeat-containing 98.1 0.00015 3.3E-09 78.3 17.4 206 27-250 488-701 (1238)
160 KOG1070 rRNA processing protei 98.1 0.00098 2.1E-08 74.5 23.7 197 33-249 1460-1663(1710)
161 KOG0543 FKBP-type peptidyl-pro 98.1 6.8E-05 1.5E-09 74.0 13.5 147 29-214 206-353 (397)
162 PF13424 TPR_12: Tetratricopep 98.1 2.4E-05 5.2E-10 60.2 8.4 70 221-290 6-75 (78)
163 KOG1127 TPR repeat-containing 98.0 0.00027 5.8E-09 76.4 18.3 246 26-291 448-701 (1238)
164 COG2976 Uncharacterized protei 98.0 0.00017 3.7E-09 64.5 14.2 133 116-249 51-188 (207)
165 PF12688 TPR_5: Tetratrico pep 98.0 0.00012 2.6E-09 61.4 12.4 97 33-179 3-102 (120)
166 KOG3081 Vesicle coat complex C 98.0 0.00034 7.3E-09 65.4 16.0 167 119-300 109-281 (299)
167 PRK10153 DNA-binding transcrip 98.0 0.00011 2.4E-09 77.3 14.7 128 121-249 342-482 (517)
168 COG1729 Uncharacterized protei 98.0 8.3E-05 1.8E-09 70.1 12.1 95 121-216 144-244 (262)
169 KOG3785 Uncharacterized conser 98.0 0.0021 4.5E-08 62.5 21.4 157 119-284 286-451 (557)
170 PF13512 TPR_18: Tetratricopep 97.9 0.00011 2.3E-09 63.0 10.7 116 119-252 11-131 (142)
171 PF12688 TPR_5: Tetratrico pep 97.9 0.00015 3.3E-09 60.9 11.3 93 120-213 3-101 (120)
172 PRK15331 chaperone protein Sic 97.9 6.5E-05 1.4E-09 65.8 8.9 95 153-248 38-133 (165)
173 PRK15331 chaperone protein Sic 97.9 0.00013 2.8E-09 63.9 10.3 94 121-215 40-133 (165)
174 KOG2047 mRNA splicing factor [ 97.8 0.0085 1.8E-07 62.5 24.3 274 29-315 246-572 (835)
175 PF13371 TPR_9: Tetratricopept 97.8 5.2E-05 1.1E-09 57.4 6.6 58 160-218 3-60 (73)
176 COG4700 Uncharacterized protei 97.8 0.00043 9.4E-09 61.4 12.9 126 122-248 93-221 (251)
177 KOG1585 Protein required for f 97.8 0.0011 2.3E-08 61.4 15.7 209 120-334 33-264 (308)
178 COG3118 Thioredoxin domain-con 97.8 0.0019 4.2E-08 61.5 17.9 169 136-317 121-297 (304)
179 KOG0543 FKBP-type peptidyl-pro 97.8 0.00016 3.6E-09 71.4 10.7 114 122-236 212-341 (397)
180 PRK11906 transcriptional regul 97.8 0.0012 2.5E-08 67.0 16.8 153 156-316 259-430 (458)
181 KOG2047 mRNA splicing factor [ 97.8 0.014 3.1E-07 60.9 24.5 246 22-292 16-279 (835)
182 COG4785 NlpI Lipoprotein NlpI, 97.8 0.00064 1.4E-08 61.8 13.2 161 122-291 102-267 (297)
183 KOG2053 Mitochondrial inherita 97.8 0.0012 2.7E-08 70.9 17.3 110 128-238 19-128 (932)
184 COG4105 ComL DNA uptake lipopr 97.8 0.0089 1.9E-07 56.1 21.1 191 32-294 35-237 (254)
185 PRK11906 transcriptional regul 97.7 0.0019 4.1E-08 65.5 17.1 162 122-290 259-436 (458)
186 COG0457 NrfG FOG: TPR repeat [ 97.7 0.032 7E-07 49.8 25.0 170 117-293 94-268 (291)
187 KOG3617 WD40 and TPR repeat-co 97.7 0.0083 1.8E-07 64.1 22.0 181 120-322 914-1134(1416)
188 PF13512 TPR_18: Tetratricopep 97.7 0.00066 1.4E-08 58.2 11.2 75 148-222 5-83 (142)
189 KOG1915 Cell cycle control pro 97.7 0.0027 5.8E-08 63.9 16.7 177 123-308 78-254 (677)
190 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0091 2E-07 54.5 17.2 208 16-249 54-266 (297)
191 PF05843 Suf: Suppressor of fo 97.6 0.0017 3.8E-08 63.1 14.0 128 122-250 5-137 (280)
192 KOG4234 TPR repeat-containing 97.6 0.0012 2.7E-08 59.2 11.5 72 116-187 132-203 (271)
193 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00061 1.3E-08 68.9 10.6 70 147-216 70-141 (453)
194 COG2976 Uncharacterized protei 97.5 0.0041 8.9E-08 55.8 14.3 115 170-293 70-191 (207)
195 KOG1586 Protein required for f 97.4 0.0062 1.3E-07 56.1 14.6 171 156-329 77-266 (288)
196 KOG0545 Aryl-hydrocarbon recep 97.4 0.0036 7.8E-08 58.0 12.9 131 21-187 169-299 (329)
197 COG0457 NrfG FOG: TPR repeat [ 97.4 0.02 4.3E-07 51.2 18.1 167 120-293 61-234 (291)
198 PF13424 TPR_12: Tetratricopep 97.4 0.00027 5.9E-09 54.2 4.7 61 190-250 8-76 (78)
199 PF07079 DUF1347: Protein of u 97.4 0.06 1.3E-06 54.3 21.8 134 32-181 7-157 (549)
200 KOG2610 Uncharacterized conser 97.3 0.0073 1.6E-07 58.4 13.7 163 124-289 109-275 (491)
201 PF13281 DUF4071: Domain of un 97.2 0.028 6.1E-07 56.3 18.0 171 119-293 142-337 (374)
202 PF10300 DUF3808: Protein of u 97.2 0.0081 1.8E-07 62.8 14.9 119 133-251 248-378 (468)
203 KOG1130 Predicted G-alpha GTPa 97.2 0.005 1.1E-07 61.0 12.1 268 35-316 21-338 (639)
204 PF13428 TPR_14: Tetratricopep 97.2 0.0011 2.3E-08 45.0 5.3 38 33-70 3-40 (44)
205 KOG1586 Protein required for f 97.2 0.0081 1.8E-07 55.4 12.4 149 127-291 23-184 (288)
206 PF13428 TPR_14: Tetratricopep 97.1 0.0012 2.7E-08 44.7 5.5 41 154-195 3-43 (44)
207 KOG1941 Acetylcholine receptor 97.1 0.054 1.2E-06 53.1 18.4 249 31-291 6-276 (518)
208 KOG4234 TPR repeat-containing 97.1 0.003 6.4E-08 56.9 9.1 94 124-218 101-199 (271)
209 PF05843 Suf: Suppressor of fo 97.1 0.0048 1E-07 60.0 11.5 142 161-307 10-153 (280)
210 PF08631 SPO22: Meiosis protei 97.1 0.14 3.1E-06 49.7 21.6 243 42-288 4-273 (278)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0017 3.8E-08 65.7 8.3 68 181-249 70-141 (453)
212 KOG4555 TPR repeat-containing 97.1 0.0056 1.2E-07 51.3 9.6 92 157-249 48-144 (175)
213 KOG2053 Mitochondrial inherita 97.1 0.011 2.3E-07 63.9 13.9 122 163-293 20-142 (932)
214 KOG2796 Uncharacterized conser 97.0 0.011 2.4E-07 55.4 12.3 148 25-185 171-319 (366)
215 KOG2471 TPR repeat-containing 97.0 0.014 3.1E-07 59.0 13.8 148 157-305 211-380 (696)
216 KOG4648 Uncharacterized conser 97.0 0.0044 9.4E-08 60.1 9.6 95 192-293 102-197 (536)
217 PF08424 NRDE-2: NRDE-2, neces 97.0 0.051 1.1E-06 53.9 17.4 151 140-291 7-184 (321)
218 COG2909 MalT ATP-dependent tra 97.0 0.15 3.3E-06 55.5 21.6 243 30-286 414-684 (894)
219 COG3898 Uncharacterized membra 97.0 0.046 1E-06 54.1 16.3 182 113-304 115-306 (531)
220 PF07719 TPR_2: Tetratricopept 96.9 0.0018 3.9E-08 40.8 4.5 33 32-64 2-34 (34)
221 KOG3617 WD40 and TPR repeat-co 96.9 0.034 7.3E-07 59.7 15.9 186 123-320 805-1035(1416)
222 PF10300 DUF3808: Protein of u 96.9 0.018 3.8E-07 60.2 13.9 151 130-290 200-376 (468)
223 COG3118 Thioredoxin domain-con 96.8 0.096 2.1E-06 50.2 16.7 128 120-249 136-265 (304)
224 KOG2796 Uncharacterized conser 96.7 0.026 5.7E-07 53.0 12.0 130 157-293 182-318 (366)
225 PF00515 TPR_1: Tetratricopept 96.7 0.0033 7.2E-08 39.7 4.3 33 32-64 2-34 (34)
226 PF03704 BTAD: Bacterial trans 96.6 0.062 1.3E-06 46.5 13.2 115 123-251 11-127 (146)
227 PF13431 TPR_17: Tetratricopep 96.6 0.0027 5.8E-08 40.5 3.3 32 175-207 2-33 (34)
228 KOG1585 Protein required for f 96.4 0.19 4E-06 47.0 15.4 175 32-249 32-219 (308)
229 PF09613 HrpB1_HrpK: Bacterial 96.2 0.23 5E-06 43.5 14.1 72 163-235 21-93 (160)
230 KOG4555 TPR repeat-containing 96.2 0.068 1.5E-06 45.0 10.2 95 123-217 48-145 (175)
231 KOG4648 Uncharacterized conser 96.2 0.02 4.3E-07 55.7 7.9 96 122-218 101-196 (536)
232 PF13181 TPR_8: Tetratricopept 96.2 0.0083 1.8E-07 37.8 3.8 32 32-63 2-33 (34)
233 COG4649 Uncharacterized protei 96.1 0.29 6.3E-06 43.3 14.2 124 162-291 68-197 (221)
234 PF09613 HrpB1_HrpK: Bacterial 96.1 0.21 4.6E-06 43.8 13.3 84 120-204 12-95 (160)
235 PF07719 TPR_2: Tetratricopept 96.0 0.018 3.9E-07 36.1 4.9 31 263-293 3-33 (34)
236 PF03704 BTAD: Bacterial trans 96.0 0.1 2.2E-06 45.1 11.2 54 160-214 70-123 (146)
237 PF13174 TPR_6: Tetratricopept 96.0 0.011 2.3E-07 36.8 3.6 31 33-63 2-32 (33)
238 KOG1308 Hsp70-interacting prot 96.0 0.007 1.5E-07 58.8 3.9 123 124-247 120-242 (377)
239 PF04184 ST7: ST7 protein; In 95.8 0.43 9.4E-06 49.0 16.0 148 39-216 176-324 (539)
240 PF00515 TPR_1: Tetratricopept 95.8 0.025 5.4E-07 35.6 4.9 31 263-293 3-33 (34)
241 KOG0551 Hsp90 co-chaperone CNS 95.7 0.084 1.8E-06 51.3 9.9 65 118-182 119-183 (390)
242 KOG0985 Vesicle coat protein c 95.6 4.7 0.0001 45.1 23.2 192 119-317 1105-1336(1666)
243 KOG2471 TPR repeat-containing 95.5 0.2 4.4E-06 51.0 12.3 146 120-272 208-380 (696)
244 PF06552 TOM20_plant: Plant sp 95.5 0.047 1E-06 48.6 6.9 68 134-202 7-84 (186)
245 PF10345 Cohesin_load: Cohesin 95.4 1 2.2E-05 49.0 18.5 178 109-288 50-252 (608)
246 PF14561 TPR_20: Tetratricopep 95.4 0.18 3.9E-06 39.9 9.4 68 171-239 7-77 (90)
247 PF10602 RPN7: 26S proteasome 95.4 0.13 2.9E-06 46.3 9.7 102 189-292 38-144 (177)
248 PF13281 DUF4071: Domain of un 95.3 0.8 1.7E-05 46.0 15.8 129 119-249 180-334 (374)
249 PF13174 TPR_6: Tetratricopept 95.3 0.035 7.6E-07 34.4 4.1 29 156-184 4-32 (33)
250 KOG4642 Chaperone-dependent E3 95.2 0.035 7.7E-07 51.4 5.5 84 131-215 23-106 (284)
251 TIGR02561 HrpB1_HrpK type III 95.1 0.82 1.8E-05 39.6 13.0 53 164-217 22-74 (153)
252 PF04184 ST7: ST7 protein; In 94.9 0.9 1.9E-05 46.8 14.9 60 222-286 261-320 (539)
253 COG4649 Uncharacterized protei 94.9 2.1 4.5E-05 38.1 15.1 127 122-248 62-195 (221)
254 PF13176 TPR_7: Tetratricopept 94.9 0.04 8.6E-07 35.4 3.5 27 34-60 2-28 (36)
255 KOG2041 WD40 repeat protein [G 94.8 3.1 6.8E-05 44.5 18.7 142 35-214 738-879 (1189)
256 PF04910 Tcf25: Transcriptiona 94.7 0.71 1.5E-05 46.6 13.8 188 5-227 10-231 (360)
257 KOG1464 COP9 signalosome, subu 94.6 0.7 1.5E-05 43.9 12.1 117 193-315 197-325 (440)
258 PF13181 TPR_8: Tetratricopept 94.5 0.093 2E-06 32.8 4.6 31 263-293 3-33 (34)
259 PF13431 TPR_17: Tetratricopep 94.5 0.024 5.2E-07 36.0 1.7 32 141-172 2-33 (34)
260 PF06552 TOM20_plant: Plant sp 94.5 0.12 2.5E-06 46.2 6.5 98 168-296 7-115 (186)
261 KOG2300 Uncharacterized conser 94.4 3.1 6.8E-05 42.7 17.1 169 120-291 325-515 (629)
262 PF04910 Tcf25: Transcriptiona 94.4 0.99 2.1E-05 45.5 13.9 132 121-252 43-225 (360)
263 PRK10941 hypothetical protein; 94.3 0.32 6.9E-06 46.8 9.6 67 122-188 185-251 (269)
264 PF13176 TPR_7: Tetratricopept 94.2 0.099 2.1E-06 33.5 4.2 28 264-291 2-29 (36)
265 TIGR02561 HrpB1_HrpK type III 94.2 0.53 1.1E-05 40.7 9.7 81 121-202 13-93 (153)
266 PF09986 DUF2225: Uncharacteri 94.2 0.41 8.9E-06 44.5 9.9 71 221-291 119-195 (214)
267 KOG2610 Uncharacterized conser 94.1 0.73 1.6E-05 45.0 11.6 159 38-214 110-274 (491)
268 KOG1914 mRNA cleavage and poly 93.9 5.4 0.00012 41.6 17.8 131 120-251 368-503 (656)
269 PF02259 FAT: FAT domain; Int 93.8 7.6 0.00016 38.4 20.5 29 32-60 30-58 (352)
270 KOG1497 COP9 signalosome, subu 93.8 5.8 0.00012 38.7 16.7 102 187-291 103-214 (399)
271 PF14561 TPR_20: Tetratricopep 93.6 0.23 5.1E-06 39.3 6.2 67 139-205 9-76 (90)
272 PF12968 DUF3856: Domain of Un 93.6 1.4 3.1E-05 36.6 10.6 99 191-289 13-128 (144)
273 KOG1941 Acetylcholine receptor 93.5 1.4 3E-05 43.6 12.3 151 162-312 93-265 (518)
274 KOG0376 Serine-threonine phosp 93.4 0.11 2.3E-06 53.0 4.8 102 121-223 7-109 (476)
275 smart00028 TPR Tetratricopepti 93.3 0.17 3.6E-06 29.9 4.0 31 33-63 3-33 (34)
276 COG2909 MalT ATP-dependent tra 93.2 10 0.00022 42.0 19.3 196 121-316 461-682 (894)
277 KOG4642 Chaperone-dependent E3 93.2 0.34 7.3E-06 45.1 7.2 92 162-254 20-112 (284)
278 PF04053 Coatomer_WDAD: Coatom 93.1 3.2 6.9E-05 43.1 15.2 131 125-288 268-400 (443)
279 KOG2300 Uncharacterized conser 93.1 12 0.00025 38.7 18.3 135 115-252 364-517 (629)
280 KOG3616 Selective LIM binding 93.0 11 0.00025 40.7 18.8 75 161-244 800-874 (1636)
281 PF11207 DUF2989: Protein of u 93.0 4.6 0.0001 36.9 14.2 143 124-281 54-198 (203)
282 KOG0376 Serine-threonine phosp 92.8 0.15 3.3E-06 51.9 4.8 69 120-188 40-108 (476)
283 KOG1914 mRNA cleavage and poly 92.5 8.5 0.00018 40.2 16.8 144 168-318 347-497 (656)
284 PF12862 Apc5: Anaphase-promot 92.3 2.2 4.8E-05 33.8 10.2 62 230-291 8-71 (94)
285 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 0.4 8.7E-06 33.8 4.9 38 121-158 4-41 (53)
286 PF10345 Cohesin_load: Cohesin 92.0 3.1 6.7E-05 45.2 14.2 119 170-291 39-169 (608)
287 KOG0545 Aryl-hydrocarbon recep 91.9 1.6 3.4E-05 41.0 9.8 98 120-218 180-295 (329)
288 KOG1258 mRNA processing protei 91.7 13 0.00027 39.4 17.3 162 127-294 306-474 (577)
289 PF04190 DUF410: Protein of un 91.1 3.9 8.5E-05 39.2 12.3 105 164-284 2-113 (260)
290 PF10602 RPN7: 26S proteasome 90.8 5.3 0.00011 35.9 12.2 115 23-149 28-144 (177)
291 PF13374 TPR_10: Tetratricopep 90.7 0.45 9.7E-06 30.9 3.9 30 31-60 2-31 (42)
292 KOG4507 Uncharacterized conser 90.5 0.52 1.1E-05 49.2 5.8 96 155-250 609-706 (886)
293 COG5159 RPN6 26S proteasome re 90.4 6 0.00013 38.1 12.3 132 156-290 7-154 (421)
294 KOG3616 Selective LIM binding 90.4 16 0.00035 39.6 16.5 73 163-244 743-815 (1636)
295 PF14853 Fis1_TPR_C: Fis1 C-te 90.3 0.77 1.7E-05 32.4 4.9 37 34-70 4-40 (53)
296 KOG3364 Membrane protein invol 90.2 1.8 4E-05 36.7 7.8 69 120-188 34-107 (149)
297 KOG4507 Uncharacterized conser 90.0 0.61 1.3E-05 48.7 5.9 100 122-222 610-712 (886)
298 KOG1538 Uncharacterized conser 90.0 17 0.00038 38.8 16.2 111 125-246 710-830 (1081)
299 PF12862 Apc5: Anaphase-promot 90.0 1.5 3.2E-05 34.9 7.0 28 225-252 46-73 (94)
300 PF07721 TPR_4: Tetratricopept 89.8 0.58 1.3E-05 27.5 3.4 23 190-212 4-26 (26)
301 PF13374 TPR_10: Tetratricopep 89.5 0.92 2E-05 29.3 4.7 31 222-252 4-34 (42)
302 PF12968 DUF3856: Domain of Un 89.2 12 0.00026 31.3 13.4 96 157-252 14-132 (144)
303 PF04053 Coatomer_WDAD: Coatom 89.2 4.3 9.3E-05 42.1 11.5 128 123-286 299-427 (443)
304 smart00028 TPR Tetratricopepti 89.1 0.65 1.4E-05 27.1 3.6 30 264-293 4-33 (34)
305 KOG0985 Vesicle coat protein c 88.9 8.7 0.00019 43.1 13.6 85 219-315 1103-1188(1666)
306 PF07720 TPR_3: Tetratricopept 88.6 0.96 2.1E-05 29.1 4.0 30 34-63 4-35 (36)
307 KOG3824 Huntingtin interacting 88.2 1.3 2.8E-05 42.8 6.3 65 123-187 121-185 (472)
308 PF08424 NRDE-2: NRDE-2, neces 88.0 6.4 0.00014 39.0 11.5 112 135-249 48-183 (321)
309 PF07721 TPR_4: Tetratricopept 87.7 0.76 1.7E-05 27.0 3.0 23 33-55 3-25 (26)
310 COG4455 ImpE Protein of avirul 87.4 5.9 0.00013 36.7 9.7 126 161-293 10-137 (273)
311 PF13041 PPR_2: PPR repeat fam 86.8 2.9 6.4E-05 28.6 6.0 39 267-305 9-49 (50)
312 PRK10941 hypothetical protein; 86.7 3.3 7.2E-05 39.9 8.3 53 162-215 191-243 (269)
313 KOG0551 Hsp90 co-chaperone CNS 86.3 3.5 7.7E-05 40.4 8.1 94 124-218 87-184 (390)
314 KOG1258 mRNA processing protei 86.2 50 0.0011 35.1 24.8 149 119-275 332-489 (577)
315 KOG2422 Uncharacterized conser 85.6 21 0.00044 37.8 13.6 163 32-227 285-457 (665)
316 PF08631 SPO22: Meiosis protei 85.6 36 0.00077 32.9 20.8 226 5-247 9-273 (278)
317 KOG2422 Uncharacterized conser 84.7 59 0.0013 34.5 16.4 160 130-293 250-451 (665)
318 PF04781 DUF627: Protein of un 84.1 15 0.00033 30.1 9.7 29 159-187 3-31 (111)
319 COG2912 Uncharacterized conser 83.8 5.3 0.00012 38.2 8.0 55 161-216 190-244 (269)
320 KOG4814 Uncharacterized conser 83.7 17 0.00036 38.9 12.0 64 119-182 395-458 (872)
321 KOG3824 Huntingtin interacting 83.6 14 0.0003 36.0 10.6 59 159-218 123-181 (472)
322 COG4455 ImpE Protein of avirul 83.5 9.5 0.00021 35.4 9.1 64 125-188 8-71 (273)
323 PF11207 DUF2989: Protein of u 83.5 8.9 0.00019 35.1 9.0 73 164-239 118-197 (203)
324 TIGR03504 FimV_Cterm FimV C-te 83.2 1.5 3.3E-05 29.6 3.0 27 34-60 2-28 (44)
325 PF09986 DUF2225: Uncharacteri 83.1 3.9 8.4E-05 38.0 6.8 58 3-62 139-196 (214)
326 PF00244 14-3-3: 14-3-3 protei 83.0 29 0.00062 32.8 12.7 166 122-289 5-197 (236)
327 PRK15490 Vi polysaccharide bio 82.9 22 0.00047 38.0 12.9 130 121-253 11-151 (578)
328 PF02259 FAT: FAT domain; Int 82.6 52 0.0011 32.4 23.7 114 189-302 148-300 (352)
329 TIGR03504 FimV_Cterm FimV C-te 82.2 1.4 3E-05 29.8 2.5 24 191-214 3-26 (44)
330 PRK15180 Vi polysaccharide bio 81.9 4.9 0.00011 41.3 7.3 84 130-214 301-384 (831)
331 KOG1463 26S proteasome regulat 81.9 16 0.00034 36.1 10.4 131 156-289 8-156 (411)
332 PRK15180 Vi polysaccharide bio 81.7 6.5 0.00014 40.4 8.1 51 163-214 300-350 (831)
333 PF09797 NatB_MDM20: N-acetylt 81.5 14 0.0003 37.2 10.8 107 169-285 200-310 (365)
334 KOG1920 IkappaB kinase complex 81.1 42 0.00092 38.5 14.7 24 121-144 883-906 (1265)
335 PF10255 Paf67: RNA polymerase 80.4 17 0.00036 37.2 10.7 62 225-289 127-192 (404)
336 PF12854 PPR_1: PPR repeat 80.2 4.3 9.2E-05 25.5 4.2 26 220-245 7-32 (34)
337 KOG1839 Uncharacterized protei 80.0 21 0.00045 41.3 12.1 162 123-285 937-1123(1236)
338 COG3629 DnrI DNA-binding trans 79.8 6.4 0.00014 38.0 7.1 59 190-248 156-215 (280)
339 COG4976 Predicted methyltransf 79.4 3.1 6.8E-05 38.7 4.6 60 128-187 5-64 (287)
340 KOG2581 26S proteasome regulat 79.4 31 0.00068 34.9 11.7 100 191-293 173-279 (493)
341 COG4976 Predicted methyltransf 79.3 3.3 7.1E-05 38.6 4.7 58 230-294 5-62 (287)
342 COG5191 Uncharacterized conser 79.0 4.3 9.4E-05 39.4 5.6 80 146-225 101-181 (435)
343 PF04190 DUF410: Protein of un 78.4 64 0.0014 30.9 19.1 70 219-290 89-170 (260)
344 PF07079 DUF1347: Protein of u 77.9 91 0.002 32.3 21.6 194 39-246 306-521 (549)
345 KOG2396 HAT (Half-A-TPR) repea 77.6 18 0.0004 37.5 9.8 58 131-188 118-176 (568)
346 PF04097 Nic96: Nup93/Nic96; 77.6 32 0.0007 37.4 12.6 18 39-56 266-283 (613)
347 PRK12798 chemotaxis protein; R 77.5 89 0.0019 32.0 17.3 163 38-217 119-287 (421)
348 COG0790 FOG: TPR repeat, SEL1 77.5 70 0.0015 30.7 16.1 143 120-275 75-236 (292)
349 PF11817 Foie-gras_1: Foie gra 77.3 20 0.00043 34.0 9.7 83 205-288 163-245 (247)
350 PF04781 DUF627: Protein of un 77.1 14 0.0003 30.4 7.3 39 124-162 2-43 (111)
351 PF09797 NatB_MDM20: N-acetylt 76.9 25 0.00053 35.5 10.9 108 201-315 197-308 (365)
352 PF09670 Cas_Cas02710: CRISPR- 76.9 60 0.0013 33.0 13.6 62 120-181 133-198 (379)
353 COG3629 DnrI DNA-binding trans 75.8 13 0.00029 35.9 8.0 60 155-215 156-215 (280)
354 COG3914 Spy Predicted O-linked 75.5 67 0.0015 34.2 13.4 37 267-303 148-185 (620)
355 KOG1308 Hsp70-interacting prot 75.1 2.7 5.8E-05 41.3 3.1 91 194-291 121-212 (377)
356 PRK13184 pknD serine/threonine 74.6 11 0.00025 42.6 8.3 94 161-254 484-586 (932)
357 PF09670 Cas_Cas02710: CRISPR- 74.0 44 0.00096 34.0 11.8 59 157-215 136-197 (379)
358 PF04348 LppC: LppC putative l 73.9 1 2.3E-05 47.9 0.0 58 119-176 25-85 (536)
359 PRK12798 chemotaxis protein; R 73.0 1.2E+02 0.0025 31.2 24.1 205 123-335 117-336 (421)
360 KOG1550 Extracellular protein 72.1 1.5E+02 0.0032 31.9 15.8 142 135-291 229-394 (552)
361 KOG0687 26S proteasome regulat 71.7 1.1E+02 0.0024 30.3 13.1 96 189-292 106-212 (393)
362 COG1747 Uncharacterized N-term 71.5 1.4E+02 0.003 31.5 16.0 21 271-291 215-235 (711)
363 TIGR02508 type_III_yscG type I 70.2 49 0.0011 26.8 8.5 72 169-245 22-93 (115)
364 PF10938 YfdX: YfdX protein; 70.0 14 0.00031 32.3 6.3 57 191-248 79-145 (155)
365 PF10579 Rapsyn_N: Rapsyn N-te 70.0 23 0.00051 27.2 6.5 21 164-184 18-38 (80)
366 KOG2062 26S proteasome regulat 68.4 1.9E+02 0.0042 31.8 15.8 163 117-291 58-240 (929)
367 KOG3364 Membrane protein invol 68.0 14 0.0003 31.6 5.4 57 166-222 49-107 (149)
368 KOG1497 COP9 signalosome, subu 67.8 78 0.0017 31.2 11.0 109 25-179 97-211 (399)
369 PF10255 Paf67: RNA polymerase 67.7 30 0.00065 35.4 8.8 60 191-250 126-194 (404)
370 KOG1538 Uncharacterized conser 67.2 20 0.00044 38.4 7.5 51 160-214 781-831 (1081)
371 PF12854 PPR_1: PPR repeat 67.1 10 0.00023 23.7 3.6 24 190-213 10-33 (34)
372 KOG2396 HAT (Half-A-TPR) repea 66.8 35 0.00075 35.6 8.9 83 141-224 94-178 (568)
373 TIGR03362 VI_chp_7 type VI sec 65.6 1.4E+02 0.0031 29.3 13.9 57 194-250 220-280 (301)
374 KOG0128 RNA-binding protein SA 64.8 2.4E+02 0.0051 31.5 16.7 94 119-214 114-217 (881)
375 PF13041 PPR_2: PPR repeat fam 64.8 20 0.00044 24.2 5.0 25 191-215 7-31 (50)
376 PF11817 Foie-gras_1: Foie gra 64.0 45 0.00098 31.6 9.0 73 234-307 152-231 (247)
377 PF10938 YfdX: YfdX protein; 63.9 58 0.0013 28.5 8.9 94 121-215 5-145 (155)
378 PF10516 SHNi-TPR: SHNi-TPR; 63.6 16 0.00035 23.7 3.9 28 264-291 4-31 (38)
379 KOG3783 Uncharacterized conser 63.4 2E+02 0.0044 30.4 14.1 114 135-250 250-376 (546)
380 COG2912 Uncharacterized conser 63.3 15 0.00033 35.1 5.4 59 192-250 186-245 (269)
381 KOG1550 Extracellular protein 62.3 2.3E+02 0.0049 30.5 17.4 158 120-290 246-426 (552)
382 PF04348 LppC: LppC putative l 61.9 2.6 5.6E-05 44.9 0.0 64 111-174 54-120 (536)
383 KOG0276 Vesicle coat complex C 61.8 48 0.001 35.4 9.0 23 265-287 670-692 (794)
384 COG0790 FOG: TPR repeat, SEL1 60.2 1.6E+02 0.0035 28.1 18.8 158 129-301 52-230 (292)
385 PF12583 TPPII_N: Tripeptidyl 60.1 11 0.00025 31.7 3.4 48 24-75 73-120 (139)
386 COG3947 Response regulator con 59.7 33 0.00072 33.3 6.9 57 157-214 284-340 (361)
387 PF12234 Rav1p_C: RAVE protein 59.4 2.7E+02 0.0058 30.4 15.0 110 108-245 442-553 (631)
388 COG5107 RNA14 Pre-mRNA 3'-end 58.9 1.7E+02 0.0037 30.4 12.0 80 145-225 35-114 (660)
389 PF01535 PPR: PPR repeat; Int 58.8 15 0.00033 21.5 3.2 25 223-247 3-27 (31)
390 KOG4814 Uncharacterized conser 58.0 56 0.0012 35.1 8.7 95 119-214 355-455 (872)
391 PF07720 TPR_3: Tetratricopept 57.9 34 0.00074 21.8 4.7 29 264-292 4-34 (36)
392 TIGR00756 PPR pentatricopeptid 57.3 25 0.00054 21.0 4.1 25 267-291 6-30 (35)
393 KOG1839 Uncharacterized protei 57.1 77 0.0017 36.9 10.3 133 158-291 938-1087(1236)
394 PF09205 DUF1955: Domain of un 56.6 41 0.0009 28.8 6.2 32 38-69 9-40 (161)
395 KOG3807 Predicted membrane pro 56.2 1.9E+02 0.0041 28.8 11.4 89 125-215 191-303 (556)
396 KOG4318 Bicoid mRNA stability 55.6 1.3E+02 0.0027 34.0 11.1 112 192-308 712-828 (1088)
397 PF10516 SHNi-TPR: SHNi-TPR; 55.3 47 0.001 21.6 5.0 25 191-215 5-29 (38)
398 TIGR00756 PPR pentatricopeptid 54.9 26 0.00056 20.9 3.9 26 223-248 3-28 (35)
399 smart00299 CLH Clathrin heavy 54.7 1.3E+02 0.0028 25.2 10.0 83 193-284 13-105 (140)
400 PF10579 Rapsyn_N: Rapsyn N-te 54.0 91 0.002 24.0 7.1 51 228-283 15-65 (80)
401 KOG1464 COP9 signalosome, subu 53.9 1.1E+02 0.0024 29.5 9.2 24 267-290 151-174 (440)
402 PF07219 HemY_N: HemY protein 53.7 54 0.0012 26.6 6.6 28 120-147 61-88 (108)
403 COG3914 Spy Predicted O-linked 53.7 1.5E+02 0.0031 31.8 10.9 107 125-232 74-188 (620)
404 PRK11619 lytic murein transgly 53.4 3.4E+02 0.0074 29.8 24.4 119 164-289 253-374 (644)
405 PF10037 MRP-S27: Mitochondria 53.0 1.7E+02 0.0037 30.3 11.3 92 194-291 73-168 (429)
406 KOG0686 COP9 signalosome, subu 52.4 1.8E+02 0.004 29.7 10.9 121 188-310 151-286 (466)
407 PF09477 Type_III_YscG: Bacter 52.4 1.3E+02 0.0028 24.7 8.4 76 167-247 21-96 (116)
408 KOG2041 WD40 repeat protein [G 52.0 1.8E+02 0.004 31.8 11.4 60 257-323 792-852 (1189)
409 PF00637 Clathrin: Region in C 50.9 5.6 0.00012 33.9 0.2 52 163-214 18-69 (143)
410 PRK13184 pknD serine/threonine 50.9 45 0.00098 38.0 7.3 95 191-293 479-584 (932)
411 KOG3807 Predicted membrane pro 50.8 1.8E+02 0.004 28.8 10.4 51 161-214 193-243 (556)
412 KOG0276 Vesicle coat complex C 49.6 1.5E+02 0.0033 31.8 10.3 101 162-287 647-747 (794)
413 PF07163 Pex26: Pex26 protein; 49.5 2.6E+02 0.0056 27.2 11.4 118 161-284 44-181 (309)
414 COG3947 Response regulator con 49.3 48 0.001 32.2 6.1 58 191-248 283-341 (361)
415 smart00386 HAT HAT (Half-A-TPR 49.1 41 0.00088 19.7 4.0 21 167-187 2-22 (33)
416 KOG0530 Protein farnesyltransf 48.7 2.6E+02 0.0056 27.0 11.3 117 132-249 57-176 (318)
417 PF15297 CKAP2_C: Cytoskeleton 47.7 1.5E+02 0.0032 29.7 9.4 61 170-231 121-186 (353)
418 PF07219 HemY_N: HemY protein 47.3 83 0.0018 25.5 6.7 46 156-202 63-108 (108)
419 COG4941 Predicted RNA polymera 45.9 3.2E+02 0.007 27.3 13.7 153 135-294 213-398 (415)
420 COG3107 LppC Putative lipoprot 45.4 1.7E+02 0.0036 31.0 9.7 58 121-178 66-125 (604)
421 cd00280 TRFH Telomeric Repeat 45.3 1.6E+02 0.0034 26.7 8.4 51 191-241 115-165 (200)
422 cd00280 TRFH Telomeric Repeat 44.8 1.5E+02 0.0032 26.9 8.1 37 31-68 111-147 (200)
423 cd02682 MIT_AAA_Arch MIT: doma 44.6 74 0.0016 24.2 5.4 18 277-294 29-46 (75)
424 cd02682 MIT_AAA_Arch MIT: doma 44.0 43 0.00094 25.4 4.1 32 29-60 4-35 (75)
425 KOG2034 Vacuolar sorting prote 43.5 5.3E+02 0.012 29.1 13.8 181 5-245 374-555 (911)
426 PF13934 ELYS: Nuclear pore co 43.3 1.8E+02 0.0039 27.2 9.1 85 155-245 81-165 (226)
427 PF11846 DUF3366: Domain of un 43.2 35 0.00075 30.8 4.3 46 206-251 130-175 (193)
428 PF06957 COPI_C: Coatomer (COP 42.8 1.4E+02 0.003 30.8 8.7 28 33-60 206-233 (422)
429 PF14863 Alkyl_sulf_dimr: Alky 42.6 1.3E+02 0.0029 25.9 7.4 46 155-201 73-118 (141)
430 KOG3783 Uncharacterized conser 42.6 4.4E+02 0.0096 28.0 19.1 72 223-294 452-524 (546)
431 KOG2280 Vacuolar assembly/sort 42.2 5.2E+02 0.011 28.7 13.1 102 127-244 693-794 (829)
432 KOG2063 Vacuolar assembly/sort 42.2 2.9E+02 0.0063 31.4 11.7 93 197-289 601-712 (877)
433 TIGR03362 VI_chp_7 type VI sec 42.0 50 0.0011 32.4 5.4 57 159-215 220-278 (301)
434 PF04762 IKI3: IKI3 family; I 41.9 4.2E+02 0.0091 30.5 13.4 109 201-324 792-903 (928)
435 PRK10316 hypothetical protein; 41.7 2.8E+02 0.0061 25.5 11.1 124 122-248 58-197 (209)
436 PF13812 PPR_3: Pentatricopept 41.2 71 0.0015 19.0 4.3 26 223-248 4-29 (34)
437 PF15015 NYD-SP12_N: Spermatog 40.0 2.5E+02 0.0055 28.9 9.7 105 32-173 177-283 (569)
438 PF04840 Vps16_C: Vps16, C-ter 39.9 1.9E+02 0.0041 28.7 9.1 98 162-283 187-284 (319)
439 PF12739 TRAPPC-Trs85: ER-Golg 38.1 4.6E+02 0.01 26.9 14.0 159 119-292 209-401 (414)
440 COG5107 RNA14 Pre-mRNA 3'-end 37.3 5E+02 0.011 27.1 11.4 115 134-249 413-531 (660)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 37.2 2.5E+02 0.0054 23.5 9.4 45 203-247 79-126 (126)
442 KOG1920 IkappaB kinase complex 36.8 3.9E+02 0.0084 31.3 11.6 25 191-215 1003-1027(1265)
443 COG5191 Uncharacterized conser 36.2 60 0.0013 31.9 4.7 69 120-188 109-178 (435)
444 COG4259 Uncharacterized protei 35.6 66 0.0014 26.0 4.0 32 219-250 71-102 (121)
445 COG4715 Uncharacterized conser 35.6 5.8E+02 0.013 27.3 15.3 117 156-283 307-427 (587)
446 PF04212 MIT: MIT (microtubule 35.1 78 0.0017 23.2 4.3 29 31-59 5-33 (69)
447 KOG2063 Vacuolar assembly/sort 34.9 7.4E+02 0.016 28.3 14.1 86 163-248 602-712 (877)
448 TIGR02710 CRISPR-associated pr 34.0 5.2E+02 0.011 26.3 13.2 53 161-213 139-197 (380)
449 KOG4279 Serine/threonine prote 34.0 1.7E+02 0.0037 32.4 7.9 171 121-293 204-398 (1226)
450 KOG2581 26S proteasome regulat 33.8 5.5E+02 0.012 26.4 15.1 60 124-185 215-280 (493)
451 PF06112 Herpes_capsid: Gammah 33.7 46 0.00099 28.7 3.1 14 448-461 133-146 (147)
452 PF12739 TRAPPC-Trs85: ER-Golg 33.5 5.4E+02 0.012 26.4 15.5 39 34-72 211-249 (414)
453 KOG0292 Vesicle coat complex C 33.3 4.4E+02 0.0096 29.9 11.0 31 32-62 992-1022(1202)
454 PF10366 Vps39_1: Vacuolar sor 33.2 2E+02 0.0044 23.4 6.8 26 264-289 42-67 (108)
455 KOG1310 WD40 repeat protein [G 32.7 89 0.0019 33.0 5.5 22 223-244 448-469 (758)
456 KOG0890 Protein kinase of the 32.2 1.2E+03 0.026 29.8 21.5 106 186-292 1669-1786(2382)
457 PF02184 HAT: HAT (Half-A-TPR) 32.2 84 0.0018 19.6 3.3 26 276-301 2-27 (32)
458 COG3107 LppC Putative lipoprot 32.1 6.3E+02 0.014 27.0 11.4 78 138-215 48-127 (604)
459 cd02681 MIT_calpain7_1 MIT: do 31.4 92 0.002 23.7 4.2 30 31-60 6-35 (76)
460 PF15297 CKAP2_C: Cytoskeleton 30.2 2.9E+02 0.0063 27.6 8.4 31 219-249 139-169 (353)
461 KOG2066 Vacuolar assembly/sort 29.9 8.3E+02 0.018 27.3 14.7 178 127-315 365-567 (846)
462 PF02064 MAS20: MAS20 protein 29.8 1.3E+02 0.0028 25.2 5.2 33 267-299 69-101 (121)
463 PF14863 Alkyl_sulf_dimr: Alky 29.8 1E+02 0.0022 26.5 4.7 44 122-165 74-117 (141)
464 cd02683 MIT_1 MIT: domain cont 29.5 1E+02 0.0022 23.5 4.1 29 32-60 7-35 (77)
465 PF14689 SPOB_a: Sensor_kinase 28.9 94 0.002 22.5 3.7 27 34-60 26-52 (62)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 28.7 3.5E+02 0.0075 22.6 9.6 46 238-288 81-126 (126)
467 TIGR02710 CRISPR-associated pr 28.5 4.5E+02 0.0098 26.7 9.7 57 121-177 133-196 (380)
468 KOG2114 Vacuolar assembly/sort 28.4 2E+02 0.0044 32.1 7.5 57 227-290 341-397 (933)
469 KOG2908 26S proteasome regulat 28.1 6.2E+02 0.013 25.3 15.9 153 163-321 86-261 (380)
470 PF10373 EST1_DNA_bind: Est1 D 28.1 2.1E+02 0.0045 27.0 7.2 61 171-232 1-62 (278)
471 KOG0292 Vesicle coat complex C 27.9 3.9E+02 0.0084 30.3 9.4 127 163-320 654-780 (1202)
472 COG5159 RPN6 26S proteasome re 27.9 5.9E+02 0.013 25.0 21.7 168 119-292 126-316 (421)
473 KOG0991 Replication factor C, 27.8 5.4E+02 0.012 24.5 11.0 72 159-230 199-282 (333)
474 KOG1310 WD40 repeat protein [G 27.5 2.4E+02 0.0052 30.0 7.5 93 204-303 391-487 (758)
475 PF02064 MAS20: MAS20 protein 27.4 1.6E+02 0.0035 24.6 5.3 40 32-71 64-103 (121)
476 COG4941 Predicted RNA polymera 26.9 2.1E+02 0.0046 28.5 6.7 86 134-221 312-399 (415)
477 COG3014 Uncharacterized protei 26.7 6.7E+02 0.014 25.2 11.3 27 267-293 219-245 (449)
478 KOG4521 Nuclear pore complex, 26.4 1.1E+03 0.024 27.8 14.5 171 116-292 918-1134(1480)
479 PF00637 Clathrin: Region in C 26.0 11 0.00024 32.0 -1.9 51 194-244 14-66 (143)
480 KOG2280 Vacuolar assembly/sort 26.0 2.1E+02 0.0045 31.6 7.0 100 161-283 693-792 (829)
481 KOG4322 Anaphase-promoting com 25.9 7.6E+02 0.016 25.6 15.8 175 116-293 271-474 (482)
482 PF10037 MRP-S27: Mitochondria 24.4 5.9E+02 0.013 26.4 9.9 78 134-214 82-165 (429)
483 KOG4121 Nuclear pore complex, 24.4 7.9E+02 0.017 28.4 11.2 108 159-289 779-894 (1128)
484 KOG4056 Translocase of outer m 23.6 3.5E+02 0.0075 23.2 6.5 49 22-71 73-121 (143)
485 KOG0530 Protein farnesyltransf 23.5 6.8E+02 0.015 24.2 12.5 125 160-291 51-177 (318)
486 PF09477 Type_III_YscG: Bacter 23.4 4.2E+02 0.0092 21.8 12.2 89 120-214 8-96 (116)
487 KOG1064 RAVE (regulator of V-A 23.4 5E+02 0.011 32.2 9.8 77 49-138 1219-1295(2439)
488 PF15015 NYD-SP12_N: Spermatog 23.2 8.6E+02 0.019 25.2 11.9 89 156-244 180-286 (569)
489 cd02680 MIT_calpain7_2 MIT: do 23.1 1.2E+02 0.0027 23.0 3.5 27 34-60 9-35 (75)
490 KOG2561 Adaptor protein NUB1, 23.0 7.8E+02 0.017 25.6 10.0 24 268-291 274-297 (568)
491 KOG2062 26S proteasome regulat 22.9 1.1E+03 0.024 26.4 15.5 22 267-289 613-634 (929)
492 PF05053 Menin: Menin; InterP 22.9 9.4E+02 0.02 25.9 10.9 67 219-287 276-344 (618)
493 PF12583 TPPII_N: Tripeptidyl 22.8 3.1E+02 0.0068 23.3 6.1 34 271-304 86-120 (139)
494 PF14689 SPOB_a: Sensor_kinase 22.6 1.6E+02 0.0034 21.3 4.0 26 225-250 28-53 (62)
495 PRK14388 hypothetical protein; 22.2 65 0.0014 24.9 1.9 18 374-395 62-79 (82)
496 cd02683 MIT_1 MIT: domain cont 22.1 1.7E+02 0.0036 22.3 4.2 21 230-250 16-36 (77)
497 PF11846 DUF3366: Domain of un 22.0 5.7E+02 0.012 22.8 9.9 32 263-294 146-177 (193)
498 PF15071 TMEM220: Transmembran 21.8 14 0.0003 30.1 -2.0 11 385-395 12-22 (104)
499 TIGR01870 cas_TM1810_Csm2 CRIS 21.1 1.9E+02 0.0041 23.0 4.5 43 2-45 7-49 (97)
500 cd02678 MIT_VPS4 MIT: domain c 20.6 1.8E+02 0.0039 21.7 4.1 29 32-60 7-35 (75)
No 1
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-78 Score=596.39 Aligned_cols=426 Identities=51% Similarity=0.709 Sum_probs=374.8
Q ss_pred cchHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC
Q 012265 2 ILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP 81 (467)
Q Consensus 2 ~~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~ 81 (467)
|..|..|+++|+++|+++|..+|||+.||++|++|+|||+|++|+.+||..+|..++..+|.|.++.+|+.|||+++.++
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH
Q 012265 82 KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV 161 (467)
Q Consensus 82 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l 161 (467)
.++++...... ...+.+.+.+.++++|+..|+..+++|.+++.+++|+.++++++...+...+|.+....++.+..
T Consensus 275 ~~~~d~~~l~~----k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t 350 (652)
T KOG2376|consen 275 QNYFDGDLLKS----KKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEAT 350 (652)
T ss_pred cccCchHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHH
Confidence 98887421111 11234566777889999999999999999999999999999999999999999998888888888
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHh--------ccccCCCChhHHHHHHHHHHHc
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA--------KIPDIQHMPATVATLVALKERA 233 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~--------~~~~~~~~p~~~~~l~~ly~~~ 233 (467)
.++...+.+|+.+|..+.+.+|+....+.|+++|+.+.+|++..|+.+|. ++.++.+.|+++..++.+|...
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKI 430 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhc
Confidence 88888999999999999999999866667999999999999999999999 7888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHhccCChhHH
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG-SIEALVGLVTTSAHVDVDKA 312 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~~d~~kA 312 (467)
++.+.|.++|.+|+.||....+....+..+|..++.|.++.|+.++|..+|+++++.+| |.++++++|.+|+.+|+++|
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka 510 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKA 510 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999988877778888999999999999999999999999999884 68999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcChhhhhhhcCCCcccccccccccccccCCCcchhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 012265 313 ESYEKRLKPLPGLNGVDVDSLEKTSGAKHVESASYFEVNEAHGEGKNKDKAKKKRKRKPRYPKGFDPANPGPPPDPERWL 392 (467)
Q Consensus 313 ~~l~~~L~~~~~~~~vDvd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~krkrk~~~pk~~dp~~~~~~pDPERWL 392 (467)
+.|.+.|||.+.+.+||||+||.+.|+++.......+............++|++||||.++|||||| .++|||||||
T Consensus 511 ~~l~k~L~p~~~l~~vdVd~LE~s~ga~~~~~~k~ta~S~~~~~~~~~~kKKk~rKrkgk~pknyn~---~~tPDPERWL 587 (652)
T KOG2376|consen 511 ESLSKKLPPLKGLKAVDVDALEKSDGAKYSEAYKKTAVSQVEEKKSKELKKKKKRKRKGKLPKNYNP---KVTPDPERWL 587 (652)
T ss_pred HHHhhcCCCcccchhcCchHhhhccCcchhhhhccccccchhhccchhhhhhcccccccCCcccCCC---CCCCChhhcc
Confidence 9999999999998899999999988999987741111111111111112334458899999999999 5899999999
Q ss_pred CccccccCCccchhhhhhhhcCCCCCcccccc-ccCCCCCCCC
Q 012265 393 PKRERSSYRPRRKDKRAAQVRGSQGAVVREKH-DAGAAGASSN 434 (467)
Q Consensus 393 P~~eRs~yr~k~k~~~~~~~~gtQG~~~~~~~-~~~~~~~~~~ 434 (467)
|+||||+||||||++++++++|||||++.++. ..++++++|.
T Consensus 588 P~reRS~yr~KrK~k~~~~~kgtQG~~~~~~se~v~~~~~s~~ 630 (652)
T KOG2376|consen 588 PRRERSTYRPKRKGKRAAIIKGTQGGAANDKSEQVPSTSKSPR 630 (652)
T ss_pred cchhccccCcccccchhhhhccccccccccchhhccCCCCCCC
Confidence 99999999999998888899999999998776 3345666666
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=3.7e-19 Score=178.64 Aligned_cols=252 Identities=12% Similarity=0.070 Sum_probs=169.3
Q ss_pred HHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265 26 IEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA 105 (467)
Q Consensus 26 ~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 105 (467)
.++-++.+|.-||-++-.+|++..|+..|+++++++|.-..+++-++|=+-.++.+.++...+.+...+ .
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---r------- 282 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL---R------- 282 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc---C-------
Confidence 345577888888888888888888888888888888887777765544333334444444433332221 1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
+...+++-|.+.+|..+|.+|-|+..+++.+...|..++++-..|..+-..|+..+|+.+|.+++...|+.
T Consensus 283 ---------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 283 ---------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred ---------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 12345666777777777777777777777777777777777666666666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265 186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 264 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll 264 (467)
.+.+ ..||.+|.++|.+++|...|++++++.+ ..+..+.|+.+|.++|++++|+..|++|+.. .+.+...+
T Consensus 354 adam-~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-------~P~fAda~ 425 (966)
T KOG4626|consen 354 ADAM-NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-------KPTFADAL 425 (966)
T ss_pred HHHH-HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-------CchHHHHH
Confidence 6655 6777777777777777777777776543 2334566777777777777777777777653 23445555
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265 265 QEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS 304 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~ 304 (467)
..+|..|-.+|+.+.|+..|.+++..+|. .++..+|...|
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 66666666666666666666666666664 45666666655
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.8e-17 Score=178.90 Aligned_cols=257 Identities=15% Similarity=0.146 Sum_probs=201.4
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
+..|.+.+++.+..... ....+.++..+|.++..+|++++|+..|++++..+|.+...++..+..+... ++.
T Consensus 310 y~~A~~~~~~al~~~~~-----~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~---g~~ 381 (615)
T TIGR00990 310 YEEAARAFEKALDLGKL-----GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL---GDP 381 (615)
T ss_pred HHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---CCH
Confidence 55777788887764422 2345567888999999999999999999999999998877665443333333 345
Q ss_pred hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265 85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 164 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~ 164 (467)
.++...+.+.....| ....++++++.+++..|++++|+..+++++..+|++..+++..|.++..
T Consensus 382 ~eA~~~~~~al~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 382 DKAEEDFDKALKLNS----------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHhCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 555555544332221 1235788999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC-h----h---HHHHHHHHHHHcCCH
Q 012265 165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM-P----A---TVATLVALKERAGDI 236 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p----~---~~~~l~~ly~~~g~~ 236 (467)
.|++++|+..|++++..+|++.... ..+|.+|...|++++|+..|++++.+.+. . . ++.....++...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~-~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVY-NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999998754 88999999999999999999999876431 1 1 122234455567999
Q ss_pred HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 237 DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 237 ~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
++|+.++++++... + .....+..+|.++++.|++++|+.+|+++++..+.
T Consensus 525 ~eA~~~~~kAl~l~----p---~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 525 IEAENLCEKALIID----P---ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhcC----C---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99999999998752 1 22234666899999999999999999999998754
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=9.2e-18 Score=168.68 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=212.3
Q ss_pred HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC-CChhHHHHhhhhhhhhhhhHHHHH
Q 012265 27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP-KDVNDSLKKLDRIKEKDMQNFQLA 105 (467)
Q Consensus 27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~-~~~~~a~~~l~~~~~~~~~~~~~~ 105 (467)
++-+.+..+-||.||...+.+++|...|.+++...|++..++ .|+.++-.. +...-+....++..+..|+
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~----gNla~iYyeqG~ldlAI~~Ykral~~~P~----- 318 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH----GNLACIYYEQGLLDLAIDTYKRALELQPN----- 318 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc----cceEEEEeccccHHHHHHHHHHHHhcCCC-----
Confidence 355788999999999999999999999999999999776554 365544322 2334444444444333333
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
...++.|.+..+-..|+..+|...+.+.+...|.+.++...+|.++..+|+.++|..+|..+++.+|+-
T Consensus 319 -----------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 319 -----------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF 387 (966)
T ss_pred -----------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh
Confidence 235788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265 186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 264 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll 264 (467)
... +..||.+|-++|++++|+.+|+.++.+.+ ..+.+..++..|..+|+.++|++.+.+|+.. ++.+..++
T Consensus 388 aaa-~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~-------nPt~AeAh 459 (966)
T KOG4626|consen 388 AAA-HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI-------NPTFAEAH 459 (966)
T ss_pred hhh-hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-------CcHHHHHH
Confidence 764 58999999999999999999999999876 3456789999999999999999999999975 36677889
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265 265 QEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS 304 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~ 304 (467)
..+|.+|-..|+..+|+..|+.++++.|| +++..++..|.
T Consensus 460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred hhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 99999999999999999999999999998 67877776665
No 5
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=99.78 E-value=9.9e-20 Score=129.18 Aligned_cols=35 Identities=77% Similarity=1.492 Sum_probs=32.0
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q 012265 365 KKRKRKPRYPKGFDPANPGPPPDPERWLPKRERSSYRP 402 (467)
Q Consensus 365 ~krkrk~~~pk~~dp~~~~~~pDPERWLP~~eRs~yr~ 402 (467)
++|||+++||||||| +++||||||||++|||+|||
T Consensus 25 ~kkkRk~rlPK~~dp---~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 25 KKKKRKPRLPKNYDP---GKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhhcccCCCCCCCCC---CCCCCccccCchhhhcccCC
Confidence 378889999999998 57999999999999999996
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.8e-16 Score=171.52 Aligned_cols=274 Identities=12% Similarity=-0.002 Sum_probs=190.5
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
-++.|...++..+..+ ++ -...+..+|.++..+|++++|+..|++++..+|++..++...++.+...++..+
T Consensus 91 ~~~~A~~~l~~~l~~~---P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN---VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred CHHHHHHHHHHHHHhC---CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH
Confidence 3566777777777643 22 224578889999999999999999999999999888877655544444443333
Q ss_pred hhHHHHhhhhhhhhhhhH-------------HHHHHHhhc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC
Q 012265 84 VNDSLKKLDRIKEKDMQN-------------FQLARVLDL--RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF 148 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~-------------~~~~~~l~~--kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~ 148 (467)
+...++.+....+..+.. ......+.. +..+..........+.+++..|++++|...+..++..+
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 333333332211110000 000000000 00000011122344567778899999999999999899
Q ss_pred CCCchHHHHHHHHHHhcCChhH----HHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265 149 PDSVMPLLLQAAVLVRENKAGK----AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV 223 (467)
Q Consensus 149 P~~~~~~ll~a~l~~~~~~~~~----A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~ 223 (467)
|++..+....|.++...|++++ |+..|++++..+|++... +..+|.++..+|++++|+..|++++.+.+ ++.++
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a-~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI-VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9988888888888888999885 789999999999988765 48889999999999999999999887765 66777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
..++.+|...|++++|+..|++++... |+. ...+..+|.++...|++++|+..|+++++.+|+
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~----P~~---~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREK----GVT---SKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----ccc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 888999999999999999998887641 211 122333577888899999999999999988875
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=3.9e-16 Score=158.88 Aligned_cols=266 Identities=15% Similarity=0.071 Sum_probs=200.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
...+++|..+...|++++|+..|++++..+|++..++...+.-+.. .+++..+...+..+... ..
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~------------~~ 100 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR---RGEVDRAIRIHQNLLSR------------PD 100 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---cCcHHHHHHHHHHHhcC------------CC
Confidence 4457789999999999999999999999999887766644333322 23455555544433221 01
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH----
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK---- 187 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~---- 187 (467)
.........+++.+.+++..|++++|...++++...+|.+..+....+.++...|++++|+..++.++...|.+..
T Consensus 101 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (389)
T PRK11788 101 LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA 180 (389)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH
Confidence 1222233467788999999999999999999999888888888888888999999999999999999988876522
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE 266 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~ 266 (467)
..+..++.++..+|++++|+..|+++++..+ ....+..++.+|...|++++|+.+|++++...+ ......+..
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~ 254 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP------EYLSEVLPK 254 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh------hhHHHHHHH
Confidence 1235688899999999999999999987654 445677889999999999999999999886421 122234555
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
++.++...|++++|...|++++...|+......++..+ ...+.+.|..+...
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 78889999999999999999999888765555555555 34567888777653
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=3.2e-16 Score=169.63 Aligned_cols=294 Identities=13% Similarity=0.054 Sum_probs=204.8
Q ss_pred HHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhH
Q 012265 7 IFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVND 86 (467)
Q Consensus 7 ~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~ 86 (467)
.|+.+++..+.... +. ..++..++.++...|++++|+..|++++..+|++..++...+..+...++...+.+
T Consensus 60 ~A~~l~~~~l~~~p---~~-----~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 60 VGLTLLSDRVLTAK---NG-----RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hhHHHhHHHHHhCC---Cc-----hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 45555655555332 11 24466778888899999999999999999999999888766555544444333344
Q ss_pred HHHhhhhhhhhhh--------------hHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC
Q 012265 87 SLKKLDRIKEKDM--------------QNFQLARVLDL--RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD 150 (467)
Q Consensus 87 a~~~l~~~~~~~~--------------~~~~~~~~l~~--kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~ 150 (467)
.+.+...+.+..+ +.......+.. .+. +....++++. ..++..|++++|...++.++..+|.
T Consensus 132 ~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 132 LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4443333211100 00000000100 000 0111233333 3477889999999999998888764
Q ss_pred C-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHH----HHHHHhccccCCC-ChhHHH
Q 012265 151 S-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI----AAESLAKIPDIQH-MPATVA 224 (467)
Q Consensus 151 ~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~----A~~~L~~~~~~~~-~p~~~~ 224 (467)
. .....+.+.++...|++++|+..+.+++..+|++... ++.+|.+|...|++++ |+..|++++.+.+ ++.++.
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~-~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~ 288 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL-RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT 288 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3 3334455677889999999999999999999999765 4889999999999996 8999999998876 677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTT 303 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a 303 (467)
.++.+|..+|++++|+.+|++++... |++ ..++..+|.++...|++++|+..|++++..+|+. .....+..+
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~----P~~---~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATH----PDL---PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999999998752 222 2345568999999999999999999999998874 333333334
Q ss_pred h-ccCChhHHHHHHhc
Q 012265 304 S-AHVDVDKAESYEKR 318 (467)
Q Consensus 304 ~-~~~d~~kA~~l~~~ 318 (467)
+ ...+.+.|.....+
T Consensus 362 l~~~G~~deA~~~l~~ 377 (656)
T PRK15174 362 LLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 4 45567888777654
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=2e-16 Score=170.75 Aligned_cols=270 Identities=14% Similarity=0.043 Sum_probs=200.6
Q ss_pred hhhhHHHHHHHHH---HHhCChHHHHHHHHHHhccC---CCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHH
Q 012265 29 ELAPIAVQLAYVQ---QLLGNTQEAFGAYTDIIKRN---LADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNF 102 (467)
Q Consensus 29 El~~i~~qlA~v~---~~~G~~~eA~~~y~~~l~~~---p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~ 102 (467)
++....+++++.+ ...+++++|+..|+.++... |.+..++...+.-+.. .++..+++..+.+....+|
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~---~g~~~eA~~~~~kal~l~P--- 362 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL---KGKHLEALADLSKSIELDP--- 362 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC---
Confidence 3344445555543 33579999999999999864 4333333333222222 2356666666655433222
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265 103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL 182 (467)
Q Consensus 103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~ 182 (467)
.....+++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..|++++..+
T Consensus 363 -------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 363 -------------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred -------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1234678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265 183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 261 (467)
Q Consensus 183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 261 (467)
|++... ++.+|.++...|++++|+..|++++...+ ++.++..++.+|..+|++++|+..|++++...+..........
T Consensus 430 P~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~ 508 (615)
T TIGR00990 430 PDFIFS-HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508 (615)
T ss_pred ccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence 999865 48899999999999999999999987655 6788889999999999999999999999986432111111222
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 262 VIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
.++...+.++...|++++|..+|++++..+|+. .++..+..++ ...+.+.|..+..+
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 222322333344799999999999999999864 4566666665 45667888776544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=7.6e-16 Score=177.05 Aligned_cols=288 Identities=13% Similarity=0.061 Sum_probs=205.7
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH-----------HHHh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA-----------VAVN 73 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~-----------va~n 73 (467)
+..|+..+++.|..+ + +...++..+|.+|..+|++++|+..|++++..+|++..... +...
T Consensus 285 ~~~A~~~l~~aL~~~---P-----~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 285 GGKAIPELQQAVRAN---P-----KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHHHHHHHHHhC---C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 466777777777643 1 22356788899999999999999999999988886543210 0000
Q ss_pred hhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch
Q 012265 74 NLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM 153 (467)
Q Consensus 74 nl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~ 153 (467)
.-......++..++...+.++....| ....++++.+.+++..|++++|++.|+++++.+|++..
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P----------------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDN----------------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 00001122445555555554433222 12346778899999999999999999999999998876
Q ss_pred HHHH------------------------------------------HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 154 PLLL------------------------------------------QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 154 ~~ll------------------------------------------~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
++.. .+.++...|++++|+..|+++++.+|++... ++
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~-~~ 499 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL-TY 499 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HH
Confidence 5432 2333456799999999999999999998765 58
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI----------------------- 247 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al----------------------- 247 (467)
.+|.+|...|++++|+..|++++...+ ++..+..++.++...++.++|+..|+++.
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 999999999999999999999987654 66666667777777888888877766421
Q ss_pred --------------HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhH
Q 012265 248 --------------KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDK 311 (467)
Q Consensus 248 --------------~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~k 311 (467)
..+.. .+.++ .++..+|.++...|++++|+..|+++++.+|+ .+++.+++.++ ...+.+.
T Consensus 580 a~~l~~~G~~~eA~~~l~~-~p~~~---~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-QPPST---RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-CCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 11111 12222 23455899999999999999999999999986 67888888877 5567899
Q ss_pred HHHHHhcCCC
Q 012265 312 AESYEKRLKP 321 (467)
Q Consensus 312 A~~l~~~L~~ 321 (467)
|..+...++.
T Consensus 656 A~~~l~~ll~ 665 (1157)
T PRK11447 656 ARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHhc
Confidence 9888877654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=1.5e-15 Score=174.57 Aligned_cols=288 Identities=16% Similarity=0.127 Sum_probs=209.5
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
+..|+..+++.+..+. + -..+++.+|.++..+|++++|+..|++++..+|.+..++.-... ++.. .+.
T Consensus 367 ~~eA~~~~~~Al~~~P---~-----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~-l~~~---~~~ 434 (1157)
T PRK11447 367 LAQAERLYQQARQVDN---T-----DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN-LYRQ---QSP 434 (1157)
T ss_pred HHHHHHHHHHHHHhCC---C-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHh---cCH
Confidence 4567778888777542 2 22467789999999999999999999999999988766543222 2221 234
Q ss_pred hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265 85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 164 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~ 164 (467)
.++...+..+....+... ......+ ....+.+.+.+++..|++++|+..+++++..+|++..+.+..|.++..
T Consensus 435 ~~A~~~l~~l~~~~~~~~---~~~~~~l----~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 435 EKALAFIASLSASQRRSI---DDIERSL----QNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHHHHHHhCCHHHHHHH---HHHHHHh----hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445444443322211100 0000001 112456788899999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----------------------------
Q 012265 165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---------------------------- 216 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---------------------------- 216 (467)
.|++++|+..+++++..+|++.... +.++.++...|++++|+.+|+++...
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~-~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQV-YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999987653 66666666677777777766654311
Q ss_pred -------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHH
Q 012265 217 -------------QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 283 (467)
Q Consensus 217 -------------~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~ 283 (467)
..++.+...++.+|...|++++|+.+|++++... |+ ...++..+|.++...|++++|..+
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~---~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PG---NADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1245566788999999999999999999999752 22 234567789999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhcC
Q 012265 284 FEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKRL 319 (467)
Q Consensus 284 le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~L 319 (467)
|+.+++..|+ ..+...+..++ ...+.+.|.++...+
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999988875 45555566665 456688888887665
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=1.8e-15 Score=168.65 Aligned_cols=291 Identities=13% Similarity=0.089 Sum_probs=190.1
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
...|..+++..+.....+ ..++..+|.++...|++++|+..|+.++...|.+...+...+..+...++ .
T Consensus 583 ~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~ 651 (899)
T TIGR02917 583 LKKALAILNEAADAAPDS--------PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN---Y 651 (899)
T ss_pred HHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---H
Confidence 456666666666433211 13456666677777777777777777766666665554433333322222 2
Q ss_pred hHHHHhhhhhhhhhhhHHH--------------------HHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 012265 85 NDSLKKLDRIKEKDMQNFQ--------------------LARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAAL 144 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~--------------------~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l 144 (467)
..+...+.+.....++... ..+.+... . +....++...+.++...|++++|...++.+
T Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-H-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222222222111111000 00000000 0 112234566778888888888898888888
Q ss_pred cccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265 145 PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV 223 (467)
Q Consensus 145 ~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~ 223 (467)
+..+|++ ......+.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+.+|+++++..+ ++.++
T Consensus 730 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 730 LKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL-RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred HhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888877 445566777888889999999998888888888765 48888889889999999999988887654 56677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHH
Q 012265 224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG-SIEALVGLVT 302 (467)
Q Consensus 224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~ 302 (467)
..++.+|...|+ .+|+..+++++... ++++ .++..+|.++...|++++|..+|+++++.+| +..+...++.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLA----PNIP---AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhC----CCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 788888888888 77888888888652 2222 2345578888889999999999999998886 4566666666
Q ss_pred Hhc-cCChhHHHHHHhc
Q 012265 303 TSA-HVDVDKAESYEKR 318 (467)
Q Consensus 303 a~~-~~d~~kA~~l~~~ 318 (467)
++. ..+.+.|..+.+.
T Consensus 880 ~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 880 ALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 663 4557778777654
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=3.8e-15 Score=151.62 Aligned_cols=261 Identities=13% Similarity=0.126 Sum_probs=195.3
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH----HHHHHhhhhhccC
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS----FAVAVNNLVALKG 80 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~----~~va~nnl~~l~~ 80 (467)
.+.|...+++.+..+. + ...++..+|.++..+|++++|..+++.++...+.+... +..++..+..
T Consensus 51 ~~~A~~~~~~al~~~p---~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~--- 119 (389)
T PRK11788 51 PDKAIDLFIEMLKVDP---E-----TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK--- 119 (389)
T ss_pred hHHHHHHHHHHHhcCc---c-----cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH---
Confidence 5678888888887542 1 23567889999999999999999999999863322211 1112222222
Q ss_pred CCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----HH
Q 012265 81 PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-----PL 155 (467)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~ 155 (467)
.++...+...+.+..... +.....+.+.+.++...|++++|.+.++.+++.+|.+.. .+
T Consensus 120 ~g~~~~A~~~~~~~l~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG----------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred CCCHHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 234555655554432211 112346678899999999999999999999988887643 23
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC--hhHHHHHHHHHHHc
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM--PATVATLVALKERA 233 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~--p~~~~~l~~ly~~~ 233 (467)
...+.++...|++++|+..++++++..|++... ++.++.+|...|++++|+..|+++.+..+. +.++..++.+|...
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRA-SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 356677889999999999999999999998765 488999999999999999999999875442 34567889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLV 301 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv 301 (467)
|++++|+..+++++... ++ .. . +..+|.++...|++++|..+|+++++.+|+...+..+.
T Consensus 263 g~~~~A~~~l~~~~~~~----p~-~~--~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 263 GDEAEGLEFLRRALEEY----PG-AD--L-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred CCHHHHHHHHHHHHHhC----CC-ch--H-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 99999999999988752 22 21 2 24479999999999999999999999999865544333
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.72 E-value=4e-15 Score=165.82 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
....+++..+..++..|++++|...++.++..+|++..+++..|.++...|++++|+..+++++..+|++.... +.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~ 201 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL-LLKGD 201 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH-HHHHH
Confidence 34455666777777777777777777777777777777777777777777777777777777777777766543 66777
Q ss_pred HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265 196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH 274 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~ 274 (467)
++...|++++|+..|+++++..+ ++.++..++.++...|++++|...++.++...+ .+.. .+...|.++...
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~ 274 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAP----NSPL---AHYLKALVDFQK 274 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCch---HHHHHHHHHHHh
Confidence 77777777777777777776554 455566667777777777777777766654321 1111 111234444455
Q ss_pred CChhHHHHHHHHHHHhcC
Q 012265 275 GREEDASHLFEELVKTHG 292 (467)
Q Consensus 275 g~~~~A~~~le~ll~~~p 292 (467)
|++++|...|++++..+|
T Consensus 275 ~~~~~A~~~~~~~l~~~~ 292 (899)
T TIGR02917 275 KNYEDARETLQDALKSAP 292 (899)
T ss_pred cCHHHHHHHHHHHHHhCC
Confidence 555555555555554444
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7.8e-15 Score=144.58 Aligned_cols=236 Identities=17% Similarity=0.214 Sum_probs=185.8
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
-++..+...|..++..|+.-+|.+.++.+++.+|.+..++.-.+.-++ +..+....++.|......+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~---d~~~~~~~~~~F~~A~~ld---------- 390 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA---DENQSEKMWKDFNKAEDLD---------- 390 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh---hhhccHHHHHHHHHHHhcC----------
Confidence 356667778899999999999999999999999988876443322222 2233444444443332221
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
++...+++.++.+++-.+++++|..-|++.+.++|++..+++-++.++++++++.++...++++..++|+.++.
T Consensus 391 ------p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Ev 464 (606)
T KOG0547|consen 391 ------PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEV 464 (606)
T ss_pred ------CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 23446899999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVAL-KERAGDIDGAAAVLDSAIKWWLNAMTEDNKL 260 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~l-y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 260 (467)
....|+++..+++|+.|+..|..++++.+ ++..+..-+.+ +.=.+++..|+.++++|++. |+..
T Consensus 465 -y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~-------Dpkc 536 (606)
T KOG0547|consen 465 -YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL-------DPKC 536 (606)
T ss_pred -HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc-------CchH
Confidence 47789999999999999999999987654 22222222222 22358999999999999985 3444
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 261 SVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 261 ~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..+...+|.+.+++|+.++|+++|++....-
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5567778999999999999999999998765
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=1.6e-14 Score=160.67 Aligned_cols=233 Identities=15% Similarity=0.033 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
..++..+|.++.. |+.++|+..|.+++...|++...+.++ ..+... ++..++...+.++....+
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA-~al~~~---Gr~eeAi~~~rka~~~~p----------- 540 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVA-YQAYQV---EDYATALAAWQKISLHDM----------- 540 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHH-HHHHHC---CCHHHHHHHHHHHhccCC-----------
Confidence 3567889999987 899999999999999999765322211 111122 344445444443211100
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
+ ....++.+.+++..|++++|...+..++..+|++.......+..+...|++++|+..|++++..+|+ .. ++
T Consensus 541 -----~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~-a~ 612 (987)
T PRK09782 541 -----S-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN-AY 612 (987)
T ss_pred -----C-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH-HH
Confidence 1 1235688999999999999999999999999988665544444455679999999999999999996 55 45
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
+.+|.++.+.|++++|+..|++++.+.+ ++.++..++.++...|++++|+..|++++... | ....++..+|.
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P---~~~~a~~nLA~ 685 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----P---DDPALIRQLAY 685 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----C---CCHHHHHHHHH
Confidence 8999999999999999999999998876 77888999999999999999999999999863 2 22346777999
Q ss_pred HHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 270 FKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
++...|++++|...|+++++..|+.
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999863
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=1.3e-13 Score=152.05 Aligned_cols=276 Identities=13% Similarity=0.022 Sum_probs=185.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhh---------hh-----
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEK---------DM----- 99 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~---------~~----- 99 (467)
+..+|+++..+|++++|+..|++++...|++..+....+..+...+ ....++..+.++... .+
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~---~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR---LSAPALGAIDDANLTPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999988877654333222111 112222222111000 00
Q ss_pred -----------hHH---H-HH---HHhhc---CCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HH
Q 012265 100 -----------QNF---Q-LA---RVLDL---RLS--PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-PL 155 (467)
Q Consensus 100 -----------~~~---~-~~---~~l~~---kL~--~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ 155 (467)
... . .. +.+.. +.. .+......+....+++..|++++|+..|+.+++..|..+. +.
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~ 275 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ 275 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH
Confidence 000 0 00 01100 000 0011112222233456789999999999999988754332 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-------------C
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKS---KIILLARAQVAAAANHPFIAAESLAKIPDIQH-------------M 219 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~---~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------------~ 219 (467)
...+.+++..|++++|+..|++++...|.+. ......|+.+++.+|++++|+..|+++.+..+ +
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 4458889999999999999999998887651 12235677788999999999999999876432 1
Q ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HH
Q 012265 220 ---PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IE 295 (467)
Q Consensus 220 ---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ 295 (467)
..+...++.++...|++++|+.+|++++... |++ ..++..+|.++...|++++|+..|++++..+|+ ..
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~----P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA----PGN---QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 2345678999999999999999999998753 222 346777899999999999999999999999987 45
Q ss_pred HHHHHHHHh-ccCChhHHHHHHhcC
Q 012265 296 ALVGLVTTS-AHVDVDKAESYEKRL 319 (467)
Q Consensus 296 ala~Lv~a~-~~~d~~kA~~l~~~L 319 (467)
+...++.++ ...+.+.|+.++..+
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555555544 455678888777654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=2.3e-13 Score=150.22 Aligned_cols=156 Identities=12% Similarity=-0.043 Sum_probs=112.3
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-C----hhHHHHHHHHHHHcCCH
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M----PATVATLVALKERAGDI 236 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~----p~~~~~l~~ly~~~g~~ 236 (467)
++..|++++|+..|+++++..|..+..+...++.+|+.+|++++|+.+|++++...+ . ......|+.++..+|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 356688888888888888876443333335578899999999999999998876543 1 23455677778889999
Q ss_pred HHHHHHHHHHHHHHHH---------hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-c
Q 012265 237 DGAAAVLDSAIKWWLN---------AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-A 305 (467)
Q Consensus 237 ~~A~~~l~~al~~~~~---------~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~ 305 (467)
++|+.+|+.+....+. ..|+ +....++..+|.++...|++++|+.+|++++...|+ ..++..+...+ .
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999888754210 0011 122223445799999999999999999999999986 56666777766 4
Q ss_pred cCChhHHHHHHhc
Q 012265 306 HVDVDKAESYEKR 318 (467)
Q Consensus 306 ~~d~~kA~~l~~~ 318 (467)
..+++.|+..++.
T Consensus 406 ~g~~~~A~~~l~~ 418 (765)
T PRK10049 406 RGWPRAAENELKK 418 (765)
T ss_pred cCCHHHHHHHHHH
Confidence 5668889888764
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.61 E-value=2.8e-13 Score=132.90 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
.++++.+.++...|++++|...+++++..+|++..+++..|.++...|++++|+..+++++..+|++... .....++.
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~--~~~~~l~~ 176 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR--ALWLYLAE 176 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999998632 23334556
Q ss_pred HcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265 199 AANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE 278 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~ 278 (467)
..+++++|+..|.+..... .+..+. .+.++...|+...+ ..+..+.........-.+.....+..+|.++...|+++
T Consensus 177 ~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 177 SKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred ccCCHHHHHHHHHHHHhhC-CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 6789999999997765322 222222 23444456666544 24444432211111011233456778999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 012265 279 DASHLFEELVKTHGS 293 (467)
Q Consensus 279 ~A~~~le~ll~~~pd 293 (467)
+|+..|+++++.+|.
T Consensus 254 ~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 254 EAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999999964
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=1.4e-13 Score=146.52 Aligned_cols=179 Identities=15% Similarity=0.040 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHh
Q 012265 132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLA 211 (467)
Q Consensus 132 ~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~ 211 (467)
+++++|...++++++.+|++..++...|.++...|++++|+..|+++++.+|++... ++.+|.+|...|++++|+..|+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI-KYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 346778888888888888888777777777777888888888888888888887764 4777888888888888888888
Q ss_pred ccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 212 KIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 212 ~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
+++.+++ ++.....++.++...|++++|+.++++++... +++. ...+..+|.++...|++++|...|+++...
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~---~p~~---~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH---LQDN---PILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc---cccC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 8877665 33333344445556777888888777766431 1111 123444677777788888888888777766
Q ss_pred cCCHHH-HHHHHHHhccCChhHHHHHHhc
Q 012265 291 HGSIEA-LVGLVTTSAHVDVDKAESYEKR 318 (467)
Q Consensus 291 ~pd~~a-la~Lv~a~~~~d~~kA~~l~~~ 318 (467)
.|+... ...+...|...+ ++|...+..
T Consensus 471 ~~~~~~~~~~l~~~~~~~g-~~a~~~l~~ 498 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS-ERALPTIRE 498 (553)
T ss_pred cchhHHHHHHHHHHHhccH-HHHHHHHHH
Confidence 665333 333333333333 355554433
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=8.8e-15 Score=142.49 Aligned_cols=255 Identities=21% Similarity=0.207 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcc--CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~--~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
.+++|.++...|++++|.+++...+.. .|+|..++...+.-...+++...+..+++++......
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-------------- 76 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------
Confidence 356799999999999999999655444 3667666554333333344455566666655432111
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKII 189 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~~~~ 189 (467)
......+.+.+ +..+++++|.+.++.....+++ ...+...+.++...++++++..++..+.... |++...
T Consensus 77 -----~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 148 (280)
T PF13429_consen 77 -----NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARF- 148 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHH-
T ss_pred -----ccccccccccc-cccccccccccccccccccccc-cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHH-
Confidence 11122333444 6788888888888877665543 3333444556778888999888888876543 455544
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 268 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la 268 (467)
.+.+|.++.+.|++++|+.+|+++++..+ ++.+...++.++...|+.+++..++....... +.++. ++..+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~----~~~~~---~~~~la 221 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA----PDDPD---LWDALA 221 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HTSCC---HCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----cCHHH---HHHHHH
Confidence 47888999999999999999999988766 67788888888888888888777777655432 22333 344568
Q ss_pred HHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHhccCC-hhHHHHHHh
Q 012265 269 SFKLRHGREEDASHLFEELVKTHG-SIEALVGLVTTSAHVD-VDKAESYEK 317 (467)
Q Consensus 269 ~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~~d-~~kA~~l~~ 317 (467)
.+++..|++++|+.+|+++++.+| |...+..+.-++...+ .+.|..+..
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred HHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888889999999999999998887 4666777777765444 577766543
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=7e-15 Score=143.20 Aligned_cols=229 Identities=22% Similarity=0.227 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..|..+|.+...+|++++|...|++++..++.++..+. +++.+....++..+++.+.......
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~----~l~~l~~~~~~~~A~~~~~~~~~~~------------- 107 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE----RLIQLLQDGDPEEALKLAEKAYERD------------- 107 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccc-------------
Confidence 55778899999999999999999999998876555432 2222223345555555554321111
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC--CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF--PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~--P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~ 189 (467)
.........+.++...++++++...++.+.... |++...++..|.++.+.|++++|+..|+++++.+|++...
T Consensus 108 ----~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~- 182 (280)
T PF13429_consen 108 ----GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA- 182 (280)
T ss_dssp --------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH-
T ss_pred ----cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-
Confidence 011122334556778899999999999876533 5677778889999999999999999999999999999875
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDI-QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 268 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~-~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la 268 (467)
...++.+++..|+++++..++..+... ..+|.++..++.+|...|++++|+.+|++++... ++++ ..+..+|
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~---~~~~~~a 255 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDP---LWLLAYA 255 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-H---HHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc----cccc---ccccccc
Confidence 488999999999999988888888654 3478888899999999999999999999988642 2233 2455689
Q ss_pred HHHHHCCChhHHHHHHHHHHH
Q 012265 269 SFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 269 ~~~l~~g~~~~A~~~le~ll~ 289 (467)
.++...|+.++|..++++++.
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-----------------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999999875
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=5.9e-13 Score=123.85 Aligned_cols=192 Identities=19% Similarity=0.151 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
..++++.+..++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ...++.+|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV-LNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHH
Confidence 45678899999999999999999999999999999988899999999999999999999999999998765 48899999
Q ss_pred HHcCChHHHHHHHhccccCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265 198 AAANHPFIAAESLAKIPDIQ---HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH 274 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~---~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~ 274 (467)
...|++++|+..|+++++.. ..+..+..++.+|...|++++|...|.+++...+ .+ ...+..+|.++...
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~---~~~~~~la~~~~~~ 182 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP----QR---PESLLELAELYYLR 182 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CC---hHHHHHHHHHHHHc
Confidence 99999999999999998643 2345677789999999999999999999987532 11 22455689999999
Q ss_pred CChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHh
Q 012265 275 GREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEK 317 (467)
Q Consensus 275 g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~ 317 (467)
|++++|..+|++++...|+ ...+..++..+ ...+.+.|..+..
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999998654 34444333333 4556677766644
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.57 E-value=3.7e-13 Score=149.89 Aligned_cols=233 Identities=13% Similarity=0.052 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
..+.+|+++...|++++|+..|++++...|.+... +..+..+.. .++...+...+.++....+
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~-~~la~all~---~Gd~~eA~~~l~qAL~l~P------------- 573 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDL-LAAANTAQA---AGNGAARDRWLQQAEQRGL------------- 573 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHH-HHHHHHHHH---CCCHHHHHHHHHHHHhcCC-------------
Confidence 36678999999999999999999998876655443 322222222 3455555555544322111
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
....+..+.+......|++++|...+++++..+|+ ..++...|.++.+.|++++|+..|++++..+|++... +..
T Consensus 574 ---~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a-~~n 648 (987)
T PRK09782 574 ---GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY-QAA 648 (987)
T ss_pred ---ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHH
Confidence 11223344444555669999999999999999996 7778888999999999999999999999999999875 599
Q ss_pred HHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265 193 RAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK 271 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~ 271 (467)
++.++...|++++|+.+|+++++..+ ++.++..++.+|..+|++++|+..|++++... +....+....|.++
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-------P~~a~i~~~~g~~~ 721 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-------DNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCchhhhhhhHHH
Confidence 99999999999999999999998776 78889999999999999999999999999752 22223445579999
Q ss_pred HHCCChhHHHHHHHHHHHhcCCH
Q 012265 272 LRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 272 l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
....+++.|.+.|.+....+++.
T Consensus 722 ~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHHHHHHHHhhcCccc
Confidence 99999999999999999888763
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=5.1e-13 Score=142.29 Aligned_cols=248 Identities=8% Similarity=-0.039 Sum_probs=164.5
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHh---------CChHHHHHHHHHHhccCCCchHHHHHHHhhh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLL---------GNTQEAFGAYTDIIKRNLADESSFAVAVNNL 75 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~---------G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl 75 (467)
+..|..++++.+..+. +....+..+|.+|... |++++|...+++++..+|++..++...+.-+
T Consensus 277 ~~~A~~~~~~Al~ldP--------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~ 348 (553)
T PRK12370 277 LQQALKLLTQCVNMSP--------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4577788888886542 2345667777776644 4489999999999999999888776554333
Q ss_pred hhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH
Q 012265 76 VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL 155 (467)
Q Consensus 76 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ 155 (467)
... ++..++...+.++...+|+ ...++++.+.+++..|++++|+..+++++..+|.+....
T Consensus 349 ~~~---g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 349 TIH---SEYIVGSLLFKQANLLSPI----------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred HHc---cCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 222 2445555555544333332 223567778888888888888888888888888877665
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 233 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~ 233 (467)
...+.+++..|++++|+..+++++... |++... +..+|.+|..+|++++|...+.++....+ ....+..++.+|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~-~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPIL-LSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 555555666788888888888888775 555543 47778888888888888888888765433 344456677777777
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
| +.|...++..+.-..... .+. ...+.++.-+|+.+.|..+ +++.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~-~~~------~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 S--ERALPTIREFLESEQRID-NNP------GLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhh-cCc------hHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7 367777776555432211 111 1146666677777777666 665543
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=1.5e-12 Score=121.17 Aligned_cols=202 Identities=18% Similarity=0.132 Sum_probs=156.2
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
....+++++|.++..+|++++|...|++++...|.+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------------------------------ 66 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL------------------------------------------ 66 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------------------------------
Confidence 35677899999999999999999999999876554321
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKS 186 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~ 186 (467)
.+.+.+.++...|++++|.+.+++++..+|.+..+....+.++...|++++|+..+++++... |...
T Consensus 67 -----------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 135 (234)
T TIGR02521 67 -----------AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPA 135 (234)
T ss_pred -----------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccch
Confidence 223457777788888999999998888888888887888888888999999999999888743 3333
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
.. ...++.+|...|++++|...|.+++...+ .+..+..++.++...|++++|...+++++... +.+. . .+.
T Consensus 136 ~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~--~-~~~ 207 (234)
T TIGR02521 136 RS-LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTY----NQTA--E-SLW 207 (234)
T ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCH--H-HHH
Confidence 33 36788899999999999999998887654 56677788889999999999999999887652 1111 1 233
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 266 EAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.++.++...|+.++|..+++.+....
T Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 208 LGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 35778888899999988888776553
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.7e-13 Score=139.98 Aligned_cols=244 Identities=14% Similarity=0.043 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCC---chHHHHHHHhhhhhccCCCChhHHHHhhhh-hhhhhhhHHHHHHH
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA---DESSFAVAVNNLVALKGPKDVNDSLKKLDR-IKEKDMQNFQLARV 107 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~---d~~~~~va~nnl~~l~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~ 107 (467)
-+..|+|..|+.++++++|..+|+.+=...|- +..++- .-++-+.+. + .+-.|-+ +.+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS---T~LWHLq~~--v--~Ls~Laq~Li~~---------- 416 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS---TTLWHLQDE--V--ALSYLAQDLIDT---------- 416 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH---HHHHHHHhh--H--HHHHHHHHHHhh----------
Confidence 66789999999999999999999999888873 333332 222222211 1 0111100 1111
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
.+..+ ..+.-.+.++-.+++.+.|++.|++++..+|+...++-+.+.-++....++.|.+.|+.++..+|.+-.
T Consensus 417 --~~~sP----esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 417 --DPNSP----ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred --CCCCc----HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 22222 345556777888899999999999999999999999889998889999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE 266 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~ 266 (467)
++ +-||.+|+++++++.|.-.|++++++.+ +..+...++.+|.+.|+.++|+.+|++|+...+ .++. ..+.
T Consensus 491 Aw-YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~----kn~l---~~~~ 562 (638)
T KOG1126|consen 491 AW-YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP----KNPL---CKYH 562 (638)
T ss_pred HH-HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC----CCch---hHHH
Confidence 65 9999999999999999999999999887 556677899999999999999999999997532 1221 2444
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHhcc
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTSAH 306 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a~~~ 306 (467)
.|.++...+++++|...||++-+.-|+. .+.+.++..|-.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 6999999999999999999999999874 445555555543
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-12 Score=127.47 Aligned_cols=262 Identities=14% Similarity=0.075 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
.-|..|.|-++..+.++|+|+..|+.+.+.+|-+..-.-+.+|-|+..++-... -.+-..+ -.+ +
T Consensus 262 ~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v----------~~i-d 326 (559)
T KOG1155|consen 262 MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNV----------SNI-D 326 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHH----------HHh-c
Confidence 356788899999999999999999999999885554444444444333221111 1110000 000 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
|. .+.+ ..-.+.-|-..++-+.|...|+.+++++|....++.+.+.-++..++...|+..|+.+++.+|.|-.++
T Consensus 327 Ky---R~ET-CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW- 401 (559)
T KOG1155|consen 327 KY---RPET-CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW- 401 (559)
T ss_pred cC---Cccc-eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH-
Confidence 11 1111 112233444456789999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
+-|||.|...+-..=|+-.|+++....+ ++.+|..||.+|.+.++.++|+.+|..|+..- +.. ..++..+|.
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dte-~~~l~~Lak 474 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DTE-GSALVRLAK 474 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------ccc-hHHHHHHHH
Confidence 9999999999999999999999999876 78899999999999999999999999998752 111 234666899
Q ss_pred HHHHCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHh---ccCChhHHHHHHhcC
Q 012265 270 FKLRHGREEDASHLFEELVKTH------GSIEALVGLVTTS---AHVDVDKAESYEKRL 319 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~~------pd~~ala~Lv~a~---~~~d~~kA~~l~~~L 319 (467)
+|.+.++.++|...|++-++.. .+.-.-+.+.++. -..|.++|..|+...
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999999844 1211223333332 567788888876543
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=4.4e-12 Score=130.21 Aligned_cols=261 Identities=15% Similarity=0.111 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
-.+..|.+....|+++.|...+.+..+..|+....+++++.-... .++...+...+.+.....++
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~---~g~~~~A~~~l~~a~~~~p~------------ 150 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ---RGDEARANQHLEEAAELAGN------------ 150 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCc------------
Confidence 346678888899999999999998888777544444443332221 23455555555443221111
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC----------
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL---------- 182 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~---------- 182 (467)
....+....+.+++..|++++|...++.+.+.+|++..+..+.+.+++..|++++|++.+..+.+..
T Consensus 151 ---~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l 227 (409)
T TIGR00540 151 ---DNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL 227 (409)
T ss_pred ---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 0112344558888889999999999999998899988888888888888888888877766665442
Q ss_pred ----------------------------C----CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChh-H--HHHHH
Q 012265 183 ----------------------------P----DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPA-T--VATLV 227 (467)
Q Consensus 183 ----------------------------P----~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~-~--~~~l~ 227 (467)
| ++.. +.+.+|.++...|++++|...+++.++..++.. . .....
T Consensus 228 ~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~-l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~ 306 (409)
T TIGR00540 228 EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIA-LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLP 306 (409)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHH
Confidence 3 1222 235555556666666666666666554333111 0 01111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHH--HHHHhcCCHHHHHHHHHHh-
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFE--ELVKTHGSIEALVGLVTTS- 304 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le--~ll~~~pd~~ala~Lv~a~- 304 (467)
..+...++.+.++..+++++.. .|+++. ..++..+|.++++.|++++|.++|+ .+++.+|+......|...+
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~----~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKN----VDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHh----CCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 2222234445555555444432 223331 1234456777777777777777777 4666667665555555544
Q ss_pred ccCChhHHHHHHh
Q 012265 305 AHVDVDKAESYEK 317 (467)
Q Consensus 305 ~~~d~~kA~~l~~ 317 (467)
...+.+.|..+.+
T Consensus 382 ~~g~~~~A~~~~~ 394 (409)
T TIGR00540 382 QAGDKAEAAAMRQ 394 (409)
T ss_pred HcCCHHHHHHHHH
Confidence 3455666655543
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=2e-12 Score=117.08 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
..+...+++-||..|++..|...++++++.+|++..+++..|.+|...|+.+.|.+.|++++..+|++.+++ ...+-.+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL-NNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL-NNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh-hhhhHHH
Confidence 346778899999999999999999999999999999999999999999999999999999999999998764 8899999
Q ss_pred HHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265 198 AAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH 274 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~ 274 (467)
+.+|++++|...|++++.... .++.+..++.+.+++|+.+.|...|++++.+.++.+ ..+.+++..+...
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~-------~~~l~~a~~~~~~ 186 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP-------PALLELARLHYKA 186 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC-------hHHHHHHHHHHhc
Confidence 999999999999999986442 456788899999999999999999999998753322 2355679999999
Q ss_pred CChhHHHHHHHHHHHhcC-CH-HHHHHHHHHhccCChhHHHHHHhcCC
Q 012265 275 GREEDASHLFEELVKTHG-SI-EALVGLVTTSAHVDVDKAESYEKRLK 320 (467)
Q Consensus 275 g~~~~A~~~le~ll~~~p-d~-~ala~Lv~a~~~~d~~kA~~l~~~L~ 320 (467)
|++-.|.-.|+......+ .. ..+.+.-.+-...|.+.+..|..+|.
T Consensus 187 ~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 187 GDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred ccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999887764 33 33444444556777777777765543
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3.1e-12 Score=125.15 Aligned_cols=290 Identities=20% Similarity=0.159 Sum_probs=166.2
Q ss_pred HHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhcc---CCCChhH
Q 012265 10 RIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALK---GPKDVND 86 (467)
Q Consensus 10 ~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~---~~~~~~~ 86 (467)
.||.|+|....+.+=.|+-| +..|.-|.++|+++.|+++++-.-+. |..+...++||+.++. +..+..+
T Consensus 403 dwcle~lk~s~~~~la~dle-----i~ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~ 474 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLE-----INKAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFAD 474 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhh-----hhHHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhH
Confidence 57888887554444333333 34688899999999999998644332 3344444667876542 3345555
Q ss_pred HHHhhhhhhhhhh-----------------hHHHHH----HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 012265 87 SLKKLDRIKEKDM-----------------QNFQLA----RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALP 145 (467)
Q Consensus 87 a~~~l~~~~~~~~-----------------~~~~~~----~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~ 145 (467)
+..+.......+. .....+ +.|.. ...-....||.++.+-..|++++|..+|-++.
T Consensus 475 aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 475 AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 5554433211100 000000 11100 00112345666666666666666666666655
Q ss_pred ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc-CCCChhHHH
Q 012265 146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD-IQHMPATVA 224 (467)
Q Consensus 146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~-~~~~p~~~~ 224 (467)
..--++...++-.|.+|....+..+|+++|-++...-|+++..+ --|+.+|-+.|+-.+|.+++-.-.. ...+..++-
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~il-skl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAIL-SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHH-HHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 55455555555556666666666666666666666666665443 5666666666666666665432221 111445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTT 303 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a 303 (467)
.|+..|+...=.++|+.+|++|.-. .| ....+.+. ++.++.+.|+|+.|.++|..+...+|. .+-+--||..
T Consensus 631 wl~ayyidtqf~ekai~y~ekaali----qp--~~~kwqlm-iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALI----QP--NQSKWQLM-IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc----Cc--cHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 6666666666666666666665432 11 22333333 578888888888888888888888874 4555556655
Q ss_pred hccCChhHHHHHHhc
Q 012265 304 SAHVDVDKAESYEKR 318 (467)
Q Consensus 304 ~~~~d~~kA~~l~~~ 318 (467)
...+.+..+.+|...
T Consensus 704 ~~dlgl~d~key~~k 718 (840)
T KOG2003|consen 704 AGDLGLKDAKEYADK 718 (840)
T ss_pred hccccchhHHHHHHH
Confidence 555666666666544
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=5.3e-12 Score=129.12 Aligned_cols=256 Identities=16% Similarity=0.128 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
.+..|.+....|+++.|...+...-.. .+++.+.++...-. + ...++...+...+.++.+..++
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~a-A-~~~g~~~~A~~~l~~A~~~~~~------------- 150 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH-AEQPVVNYLLAAEA-A-QQRGDEARANQHLERAAELADN------------- 150 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc-ccchHHHHHHHHHH-H-HHCCCHHHHHHHHHHHHhcCCc-------------
Confidence 355677777889999998777765443 22344444322211 1 1234555555555544322111
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH-------------
Q 012265 114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE------------- 180 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~------------- 180 (467)
.......-.+.+++..|++++|...++.+.+.+|++..+..+.+.+|...|++++|+.+|..+.+
T Consensus 151 --~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~ 228 (398)
T PRK10747 151 --DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE 228 (398)
T ss_pred --chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 01112233478889999999999999999999999998888888889999999998865555442
Q ss_pred -----------------------------hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHH
Q 012265 181 -----------------------------KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKE 231 (467)
Q Consensus 181 -----------------------------~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~ 231 (467)
..|+++.. ++.+|..+...|+.++|...+++.+....++.++...+.+
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~-~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l-- 305 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVAL-QVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL-- 305 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--
Confidence 23445443 4788999999999999999999998755566554443333
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhcc-CChh
Q 012265 232 RAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAH-VDVD 310 (467)
Q Consensus 232 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~-~d~~ 310 (467)
..++.++++..+++.+.. .|+++. ++..+|.+++..|++++|...|+++++..|+......|..++.. .+.+
T Consensus 306 ~~~~~~~al~~~e~~lk~----~P~~~~---l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQ----HGDTPL---LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred cCCChHHHHHHHHHHHhh----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 448888888888876653 233333 35557999999999999999999999999998776777777754 4577
Q ss_pred HHHHHHh
Q 012265 311 KAESYEK 317 (467)
Q Consensus 311 kA~~l~~ 317 (467)
.|..+.+
T Consensus 379 ~A~~~~~ 385 (398)
T PRK10747 379 EAAAMRR 385 (398)
T ss_pred HHHHHHH
Confidence 7766654
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.1e-12 Score=134.20 Aligned_cols=255 Identities=15% Similarity=0.059 Sum_probs=177.6
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
++++|++++.+.--.+.+-=++.| |.- ..+++.+..++- --+-+.++..+|..+.++..+ .|.+++++ +
T Consensus 368 ~Y~~a~~~F~~~r~~~p~rv~~me-----iyS--T~LWHLq~~v~L-s~Laq~Li~~~~~sPesWca~-GNcfSLQk--d 436 (638)
T KOG1126|consen 368 EYDQAERIFSLVRRIEPYRVKGME-----IYS--TTLWHLQDEVAL-SYLAQDLIDTDPNSPESWCAL-GNCFSLQK--D 436 (638)
T ss_pred HHHHHHHHHHHHHhhccccccchh-----HHH--HHHHHHHhhHHH-HHHHHHHHhhCCCCcHHHHHh-cchhhhhh--H
Confidence 577888888766555443222221 111 112333333321 223455666677777777644 45556643 3
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV 163 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~ 163 (467)
...|++-|.+.+..+++.. -.+--.+.=+..+..+|.|...|..++..+|.+..+++-.+.+|.
T Consensus 437 h~~Aik~f~RAiQldp~fa----------------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFA----------------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHHHHHHhhccCCccc----------------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 4455555555433322100 011112333445567899999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
++++++.|+-.|+++++.+|.+...+ -.++.++.+.|+.++|+.+|++++.+++ +|.-....+.++...+++++|+.+
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~-~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVIL-CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHH-hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 99999999999999999999987755 7889999999999999999999988876 777777888999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 243 l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
|++..+.- + + + ...+..+|.+|-+.|+.+.|+..|--+...+|.
T Consensus 580 LEeLk~~v---P-~-e--s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 580 LEELKELV---P-Q-E--SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhC---c-c-h--HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99877652 1 1 1 224555799999999999999999988888874
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=3.4e-12 Score=120.82 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH--HHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI--ILL 191 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~--~~l 191 (467)
....+++.+..++..|++++|...+++++..+|++. .+++..|.++...|++++|+..++++++.+|++... ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 345788999999999999999999999999999876 466888999999999999999999999999987642 347
Q ss_pred HHHHHHHHc--------CChHHHHHHHhccccCCC-ChhH---H--------------HHHHHHHHHcCCHHHHHHHHHH
Q 012265 192 ARAQVAAAA--------NHPFIAAESLAKIPDIQH-MPAT---V--------------ATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 192 ~Laql~~~~--------g~~~~A~~~L~~~~~~~~-~p~~---~--------------~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
.++.++... |++++|+..|++++...+ ++.. + ..++.+|...|++.+|+..++.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 788888876 889999999999986544 2211 1 2457778888999999999998
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 246 AIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 246 al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
++..+++ .+....++..+|.++...|++++|..+|+.+...+|+
T Consensus 192 al~~~p~----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 192 VVENYPD----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHCCC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8876532 2334455667889999999999999988888776653
No 35
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=1.5e-11 Score=126.69 Aligned_cols=253 Identities=15% Similarity=0.095 Sum_probs=177.7
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccC----CCchHHHHHHHhhhh-hccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN----LADESSFAVAVNNLV-ALKGPKDVNDSLKKLDRIKEKDMQNFQL 104 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~----p~d~~~~~va~nnl~-~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 104 (467)
..-+..-+|.+|..+|+++.|+.+++.++..- --+...+....+++. ......++.+|...+.++..-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i------- 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI------- 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence 33444458999999999999999999999871 011122222222221 011122334444333332110
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-------CCCc-hHHHHHHHHHHhcCChhHHHHHHH
Q 012265 105 ARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF-------PDSV-MPLLLQAAVLVRENKAGKAEELLG 176 (467)
Q Consensus 105 ~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-------P~~~-~~~ll~a~l~~~~~~~~~A~~~l~ 176 (467)
.+.. .=-+.+.-.+++.|.+.+|+..|++++|...++.++... +..+ ..+...+.++...+++++|+.+|+
T Consensus 271 ~e~~-~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 271 REEV-FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHh-cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 0000 001234566788999999999999999999888766332 2222 234466778889999999999999
Q ss_pred HHHHhC-----CCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCC------CChh---HHHHHHHHHHHcCCHHHHH
Q 012265 177 QFAEKL-----PDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQ------HMPA---TVATLVALKERAGDIDGAA 240 (467)
Q Consensus 177 ~~l~~~-----P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~------~~p~---~~~~l~~ly~~~g~~~~A~ 240 (467)
+.++.. +++ ..-++-.||.+|..+|+|++|...|++++... .+++ .+..++..|.+.+++.+|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 888754 222 12245689999999999999999999998421 1222 3668999999999999999
Q ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 241 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
.+|..+..|.+...++.+.+...+..+|.+|-.+|++++|.++.+.++..
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999986666666777788999999999999999999999999854
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=4.7e-11 Score=122.15 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=159.7
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 114 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~ 114 (467)
+..+.++..+|++++|...++.+.+..|+++.+..+...-++..+ +...+...+..+... ..+++
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g---dw~~a~~~l~~l~k~------------~~~~~ 221 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG---AWSSLLDILPSMAKA------------HVGDE 221 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHc------------CCCCH
Confidence 344788888888888888888888888888877765554444443 333333333222111 01111
Q ss_pred HHHHHH----HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 115 KQREAI----YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 115 ~q~~~l----~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
.+...+ +.............+...+..+.+....|+++.+.+..|..+...|+.++|.+.+++.++..|+ ...+
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~- 299 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLV- 299 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHH-
Confidence 111111 1111111223334566667777777788889999999999999999999999999999996554 3322
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
..+++ +..+++++++..+++.+...+ ++.+...++.++...+++++|...|++++... | .... +..++.
T Consensus 300 ~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P---~~~~-~~~La~ 369 (398)
T PRK10747 300 LLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----P---DAYD-YAWLAD 369 (398)
T ss_pred HHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C---CHHH-HHHHHH
Confidence 33444 456999999999999987655 78888899999999999999999999998742 2 2222 334799
Q ss_pred HHHHCCChhHHHHHHHHHHHh
Q 012265 270 FKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~ 290 (467)
++...|+.++|..+|++.+..
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 37
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=4.8e-12 Score=119.50 Aligned_cols=254 Identities=16% Similarity=0.045 Sum_probs=197.2
Q ss_pred HHHHHHhhhhhcCCCC--ChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 6 LIFVRIGQETLTDDNF--AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 6 ~~A~~~~~~~l~~~~~--~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
..|..+|.+.++.|-. +-+.-.-+==--..|+|.+|.+.|-+.+|...++..|+..| .+.+++++
T Consensus 196 ~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllL------------ 262 (478)
T KOG1129|consen 196 QKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLL------------ 262 (478)
T ss_pred HHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHH------------
Confidence 4567788887775422 11100000013357999999999999999999999998876 34444322
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV 163 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~ 163 (467)
..+|....+...|...+.+.+..+|.++...+-.|.++.
T Consensus 263 -----------------------------------------skvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 263 -----------------------------------------SKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred -----------------------------------------HHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 122223345566777788888899999999889999999
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHH
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
..+++++|.++|+.+++.+|.+++.+ -..|--|.-.|+.+-|+..|++++... .+|.++..++.+..-.+++|-++..
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEai-Acia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAI-ACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceee-eeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999999999998765 566777888999999999999999876 4899999999999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHH-HHhccCChhHHHHHHhc
Q 012265 243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLV-TTSAHVDVDKAESYEKR 318 (467)
Q Consensus 243 l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv-~a~~~~d~~kA~~l~~~ 318 (467)
|++|+..- ..+....++|..+|.+....||+.-|...|+-++..+++ .+++.+|. ++....|.+.|.+|+..
T Consensus 381 f~RAlsta----t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 381 FQRALSTA----TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHHHhhc----cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99998753 223445678999999999999999999999999988876 57777764 45667888888888654
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=2.9e-11 Score=124.14 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=112.2
Q ss_pred HHHHHhccccCC----CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHcCChHHHHHHHhc
Q 012265 138 RELVAALPDMFP----DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII-LLARAQVAAAANHPFIAAESLAK 212 (467)
Q Consensus 138 ~~~~~~l~~~~P----~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~-~l~Laql~~~~g~~~~A~~~L~~ 212 (467)
...+..+....| ++....+..+.++...|++++|++.+++.++.+|++.... .+...-.++..++.+.++..+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 344555555555 5778888889999999999999999999999999986421 02233344556889999999999
Q ss_pred cccCCC-Ch--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 213 IPDIQH-MP--ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 213 ~~~~~~-~p--~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
.+...+ +| .+...++.++.++|++++|..+|+.+..+- ..| .... +..+|.++...|+.++|..+|++.+.
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~--~~p---~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK--EQL---DAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh--cCC---CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 987665 77 788899999999999999999999644321 111 1122 33589999999999999999999876
Q ss_pred h
Q 012265 290 T 290 (467)
Q Consensus 290 ~ 290 (467)
.
T Consensus 399 ~ 399 (409)
T TIGR00540 399 L 399 (409)
T ss_pred H
Confidence 4
No 39
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.5e-10 Score=117.03 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
+...++.+...+|+.+.|+..+...+..|.....+-.....+...+..++...++.+-|..+|.+++...
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 4456688888999999999999977677765443222222233334556778888888999999998865
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.2e-10 Score=123.45 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=191.8
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
+..|..+++..|-.......| .++..++++..+|+.+.|+..++.++.++|.+..++..++.-....+.....
T Consensus 180 Y~~al~yyk~al~inp~~~aD-------~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 180 YRGALKYYKKALRINPACKAD-------VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred HHHHHHHHHHHHhcCcccCCC-------ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence 345666666666544333322 2567789999999999999999999999997766654221111111121122
Q ss_pred hHHHHhhhhhhhhhh-----------------hHHH---HHHH-hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 012265 85 NDSLKKLDRIKEKDM-----------------QNFQ---LARV-LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAA 143 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~-----------------~~~~---~~~~-l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~ 143 (467)
..++..+.+...-++ ++.. +++. +..-....-...-.|+.+..+...|++++|...|..
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 222222222211100 1000 0000 000000111122378999999999999999999999
Q ss_pred ccccCCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC----ChHHHHHHHhccccCCC
Q 012265 144 LPDMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN----HPFIAAESLAKIPDIQH 218 (467)
Q Consensus 144 l~~~~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g----~~~~A~~~L~~~~~~~~ 218 (467)
..+.+|++ +.+.+-.+++++..|++..|+..++++++..|++...+ .+||.+|...+ ..+.|..++.+++...+
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm-~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM-KILGCLYAHSAKKQEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH-HHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence 99999998 66778889999999999999999999999999998876 88999998776 67899999999987654
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
+...+..++.+|.+. +.-.++.+|..|+..+...... . -..++..+|..++..|++.+|...|.+++..
T Consensus 412 ~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~-i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ-I-PPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred ccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC-C-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 556788899999765 5555599999999777543322 1 2346888999999999999999999999987
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.39 E-value=5.8e-11 Score=125.92 Aligned_cols=196 Identities=17% Similarity=0.239 Sum_probs=155.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC----ChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN----KAGKAEELLGQFAEKLPDKSKIILLARAQV 196 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~----~~~~A~~~l~~~l~~~P~~~~~~~l~Laql 196 (467)
.+..+..+++.|.++.+..+|+++.+.+|++.....++|.+|...+ +.+.|..++.++++..|.+..++ +.+|++
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~-l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW-LELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH-HHHHHH
Confidence 3456889999999999999999999999999999999999987664 56789999999999999998875 999999
Q ss_pred HHHcCChHHHHHHHhccccC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-cCC--chHHHHHHHH
Q 012265 197 AAAANHPFIAAESLAKIPDI------QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM-TED--NKLSVIMQEA 267 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~------~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~-~~~--~~~~~ll~~l 267 (467)
|...+-+ .++..|..++++ ..-|.++..++.++...|++++|...|..|........ ++. .....+...+
T Consensus 424 ~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 9765544 448888887631 13578899999999999999999999999998732111 111 1112345668
Q ss_pred HHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHH-HHHhccCChhHHHHHHhc
Q 012265 268 ASFKLRHGREEDASHLFEELVKTHGS-IEALVGL-VTTSAHVDVDKAESYEKR 318 (467)
Q Consensus 268 a~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~L-v~a~~~~d~~kA~~l~~~ 318 (467)
|.++-..++++.|..+|..+++.+|. .++..+| +++.+..+...|..+++.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 99999999999999999999999987 5666666 466666666666666554
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.39 E-value=3.4e-10 Score=127.31 Aligned_cols=187 Identities=13% Similarity=0.073 Sum_probs=132.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccC-CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHc
Q 012265 124 RVLLLLHANKMDQARELVAALPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK--LPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~-P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~Laql~~~~ 200 (467)
....+...|++++|.++++.+.+.. +.+...+......|++.|++++|+.+|.++... .|+.. .+..+...|...
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~--TynsLI~a~~k~ 662 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV--FFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhC
Confidence 4446777888888888888887665 233344445556678888888888888888776 46543 236778888888
Q ss_pred CChHHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265 201 NHPFIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE 278 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~ 278 (467)
|++++|..+|+.+.+.. ++..++..|+..|.+.|++++|..+|+++... .. .++. ..|..+...|.+.|+++
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--g~---~Pdv-vtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--KL---RPTV-STMNALITALCEGNQLP 736 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC---CCCH-HHHHHHHHHHHHCCCHH
Confidence 88888888888887644 34556778888888888888888888877542 11 1222 23555677788888888
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHhcc-CChhHHHHHHhc
Q 012265 279 DASHLFEELVKTH--GSIEALVGLVTTSAH-VDVDKAESYEKR 318 (467)
Q Consensus 279 ~A~~~le~ll~~~--pd~~ala~Lv~a~~~-~d~~kA~~l~~~ 318 (467)
+|..+|+++.... ||...+..++.++.. .+.+.|..+...
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888887654 777777777777654 446777666544
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=5.7e-11 Score=107.73 Aligned_cols=203 Identities=15% Similarity=0.079 Sum_probs=160.8
Q ss_pred HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265 27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR 106 (467)
Q Consensus 27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 106 (467)
..|.+.|++|||.-|..+|++..|...++++|+.+|++..++++.+.-+-.++....+.+.+++...+.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p---------- 100 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP---------- 100 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----------
Confidence 5678899999999999999999999999999999999999998776555555555566677776544322
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccc--cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265 107 VLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPD--MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 184 (467)
Q Consensus 107 ~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~--~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~ 184 (467)
+...+..|.+..++..|++++|...|+.++. .+|.....+...+....+.|+.+.|...|++.++.+|+
T Consensus 101 ---------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 101 ---------NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred ---------CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 2345788999999999999999999998874 23333444556666678999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 185 KSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
..... +.+++.+...|+|..|...|+....-. .....+.+.+.|-...|+.+.|-.+=.+....
T Consensus 172 ~~~~~-l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 172 FPPAL-LELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred CChHH-HHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 98765 999999999999999999999886432 33444556677888889988776665554443
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=6e-11 Score=116.44 Aligned_cols=196 Identities=17% Similarity=0.064 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
.+.+.+....+++.+.++...|++++|...++++++.+|++..++...|.++...|++++|+..+.++++.+|++... +
T Consensus 57 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-~ 135 (296)
T PRK11189 57 DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-Y 135 (296)
T ss_pred cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-H
Confidence 455667778899999999999999999999999999999999999999999999999999999999999999999875 4
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF 270 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~ 270 (467)
+.+|.++...|++++|+..|++++...+..........++...+++++|+..|.+++... . ++. +. .+.+
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~---~--~~~----~~-~~~~ 205 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL---D--KEQ----WG-WNIV 205 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC---C--ccc----cH-HHHH
Confidence 889999999999999999999999876633333333345667789999999998766432 1 111 21 2455
Q ss_pred HHHCCChhHHHHHHHHHHH-------hcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 271 KLRHGREEDASHLFEELVK-------THGS-IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 271 ~l~~g~~~~A~~~le~ll~-------~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
++..|+..++ ..|+.+.+ ..|+ .+++..+...+ ...+.+.|..+.++
T Consensus 206 ~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 206 EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5667777654 35555543 2222 35677777776 45668889888654
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.37 E-value=4.7e-10 Score=126.14 Aligned_cols=260 Identities=13% Similarity=0.177 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCC-CchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNL-ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p-~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
+.-+...|.+.|++++|..+|+.+..... .|..++..+...+.. .++..+++..+..+... .+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k---~G~~eeAl~lf~~M~~~-------------Gv 538 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR---AGQVAKAFGAYGIMRSK-------------NV 538 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CcCHHHHHHHHHHHHHc-------------CC
Confidence 34455667777777777777777766542 244444333333322 23344444444332111 01
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccc----cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-CcHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPD----MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP-DKSK 187 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~----~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P-~~~~ 187 (467)
.+ ....+......+...|++++|.++++.+.. ..|+... +......|.+.|++++|.++++.+.+... .+..
T Consensus 539 ~P--D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT-ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 539 KP--DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT-VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 00 012333445567788999999999998864 3465432 33344568899999999999999988752 2333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
.+..+...|.+.|++++|+.+|+.+.... ++..++..++..|.+.|++++|..+|+.+... ... +.. ..+.
T Consensus 616 -tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~---G~~--pd~-~tyn 688 (1060)
T PLN03218 616 -VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ---GIK--LGT-VSYS 688 (1060)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC--CCH-HHHH
Confidence 34788899999999999999999988643 34456778899999999999999999998753 111 111 2355
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHh--cCCHHHHHHHHHHhcc-CChhHHHHHHhcC
Q 012265 266 EAASFKLRHGREEDASHLFEELVKT--HGSIEALVGLVTTSAH-VDVDKAESYEKRL 319 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~--~pd~~ala~Lv~a~~~-~d~~kA~~l~~~L 319 (467)
.+...|.+.|++++|..+|+++... .||...+..|+.+|.. .+.++|..+...+
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5788899999999999999999765 3888888889999855 5578998887643
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-10 Score=116.18 Aligned_cols=267 Identities=10% Similarity=0.010 Sum_probs=212.5
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
...+..-.|..+..++++.+-.++.+.++..+|-+...+.+-..-++-+++....+. .-.++++..|+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~---lsh~LV~~yP~--------- 310 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFL---LSHKLVDLYPS--------- 310 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHH---HHHHHHHhCCC---------
Confidence 445667789999999999999999999999999888776543334544544333222 11222333332
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~ 189 (467)
...-++-.+.-|+-.|++++|++.+.+....+|....+|+.-|..+.-++..++|+..|..+.+..|......
T Consensus 311 -------~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 311 -------KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred -------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH
Confidence 2235777888999999999999999999999999999999999999999999999999999999999865544
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 268 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la 268 (467)
|.+|.=|...+++.-|...|..+..+.+ +|-+...++-++-..+.+.+|..+|+.++..-+...++......++..+|
T Consensus 384 -LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 384 -LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG 462 (611)
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence 7889999999999999999999998876 77777778888888899999999999999665554433333455677899
Q ss_pred HHHHHCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHhcc-CChhHHHHHH
Q 012265 269 SFKLRHGREEDASHLFEELVKTHG-SIEALVGLVTTSAH-VDVDKAESYE 316 (467)
Q Consensus 269 ~~~l~~g~~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~-~d~~kA~~l~ 316 (467)
-++.+.+.+++|+..|++++...| +..+.+.+...|.. .++++|..+.
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999999986 46777777777754 4577876654
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.5e-10 Score=110.03 Aligned_cols=241 Identities=13% Similarity=0.108 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
...-+|.++...|++++|+-.|+++.-.+|......-+-+.- +....+..+.-+.+..+... .+
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~------------~~- 297 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAK------------VK- 297 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhh------------hh-
Confidence 345679999999999999999999999999655443222111 11122222222222221110 01
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
|...-++-.+.+++...++..|....++.+..+|.+..++++++.++...++..+|+-.++.+....|-+... +--
T Consensus 298 ---~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~-Y~G 373 (564)
T KOG1174|consen 298 ---YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI-YRG 373 (564)
T ss_pred ---cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH-HHH
Confidence 1222345567778888999999999999999999999999999999999999999999999999988887664 467
Q ss_pred HHHHHHHcCChHHHHHHHhcc------------------------------------ccCCC-ChhHHHHHHHHHHHcCC
Q 012265 193 RAQVAAAANHPFIAAESLAKI------------------------------------PDIQH-MPATVATLVALKERAGD 235 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~------------------------------------~~~~~-~p~~~~~l~~ly~~~g~ 235 (467)
|...|+.+|++.+|..+-..+ +.+.+ ..+.+..++.++...|.
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence 888899999988876553322 11222 22346678999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHH
Q 012265 236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLV 301 (467)
Q Consensus 236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv 301 (467)
+++++.+|++++..|.+ . .++..+|.++...+.+++|.+.|..++.++|.. .++-||-
T Consensus 454 ~~D~i~LLe~~L~~~~D-----~---~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 454 TKDIIKLLEKHLIIFPD-----V---NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred cchHHHHHHHHHhhccc-----c---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 99999999999876521 2 357778999999999999999999999999864 4455553
No 48
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=8.1e-11 Score=107.97 Aligned_cols=185 Identities=21% Similarity=0.226 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
++-..+.+.+..|+.+-|..+++.+...||++.....+.|.++...|.+++|+++|..+++.+|.+... +-...-+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~-~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI-RKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-HHHHHHHHHH
Confidence 555778889999999999999999999999999999999999999999999999999999999998654 4555667788
Q ss_pred cCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC--
Q 012265 200 ANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR-- 276 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~-- 276 (467)
+|+.-+|+..+...++.- .+++.|..|+.+|...|++++|.-++++.+-.. |.....+..+|.++.-.|.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------PFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHH
Confidence 999999999999998743 378999999999999999999999999988541 2333457778888877664
Q ss_pred -hhHHHHHHHHHHHhcC-CHHHHHHHHHHhccCC-hhHH
Q 012265 277 -EEDASHLFEELVKTHG-SIEALVGLVTTSAHVD-VDKA 312 (467)
Q Consensus 277 -~~~A~~~le~ll~~~p-d~~ala~Lv~a~~~~d-~~kA 312 (467)
.+-|..+|+++++.+| +..++.|+.+|.+++. ..++
T Consensus 206 N~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 4579999999999998 6788999988877665 4554
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.1e-10 Score=113.69 Aligned_cols=190 Identities=16% Similarity=0.108 Sum_probs=152.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
+...+..++..|+.-.|...++.+++.+|.++..++..+.+|...++..+-.+.+.++...+|++++. ++..||+++-.
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv-YyHRgQm~flL 407 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV-YYHRGQMRFLL 407 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch-hHhHHHHHHHH
Confidence 33456677778898999999999999999999988999999999999999999999999999999875 59999999999
Q ss_pred CChHHHHHHHhccccCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265 201 NHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~ 279 (467)
++|++|+.-|++++.+++... .+..++.+..++++++++...|+.+...+++ -+....+ .|.++..+++++.
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~----~~Evy~~---fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN----CPEVYNL---FAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CchHHHH---HHHHHhhHHhHHH
Confidence 999999999999999876332 2445555566788999999999999987743 2222222 5899999999999
Q ss_pred HHHHHHHHHHhcCCH-------HHHHH--HHHHhccCChhHHHHHHhc
Q 012265 280 ASHLFEELVKTHGSI-------EALVG--LVTTSAHVDVDKAESYEKR 318 (467)
Q Consensus 280 A~~~le~ll~~~pd~-------~ala~--Lv~a~~~~d~~kA~~l~~~ 318 (467)
|.+.|..++.+.|.. -.+++ ++...-..|+..|+.|+++
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 999999999998761 12222 2222234778888888765
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=9.2e-10 Score=104.27 Aligned_cols=259 Identities=13% Similarity=0.085 Sum_probs=179.7
Q ss_pred HHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC---chHHHH--HHHhhhhhccC
Q 012265 6 LIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA---DESSFA--VAVNNLVALKG 80 (467)
Q Consensus 6 ~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~---d~~~~~--va~nnl~~l~~ 80 (467)
+.|-+++.+.+..+ ++-++ ..+.||.++-..|..|.|+.+-+.++.. |+ +.-.++ -++.++.+.+=
T Consensus 52 dKAvdlF~e~l~~d---~~t~e-----~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 52 DKAVDLFLEMLQED---PETFE-----AHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred chHHHHHHHHHhcC---chhhH-----HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhh
Confidence 34666677776533 34443 3566899999999999999999998876 43 112222 12234443332
Q ss_pred CCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH---H-
Q 012265 81 PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL---L- 156 (467)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~---l- 156 (467)
...+.+.+..+....+ -...+.-....+|-....+++|++..+++.+..|+....- +
T Consensus 123 ~DRAE~~f~~L~de~e-------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred hhHHHHHHHHHhcchh-------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 2233333333321110 1112334456677778889999999999998887754421 1
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC--ChhHHHHHHHHHHHc
Q 012265 157 -LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALKERA 233 (467)
Q Consensus 157 -l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly~~~ 233 (467)
-.|..+....+.+.|...+.+++..+|..+.+ ...+|++++..|+|..|+..|+.+++.++ -+.+.-.|...|.+.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRA-SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 34555567888999999999999999998775 48999999999999999999999987543 566677889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLV 301 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv 301 (467)
|+.++.+..|..+.+.+. + ... ...++.+-....-.++|..++.+.+...|+......|+
T Consensus 263 g~~~~~~~fL~~~~~~~~----g-~~~---~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 263 GKPAEGLNFLRRAMETNT----G-ADA---ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred CCHHHHHHHHHHHHHccC----C-ccH---HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 999999999999887542 1 222 22256666666677788888888888889876666655
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.31 E-value=6.1e-10 Score=122.13 Aligned_cols=184 Identities=9% Similarity=0.040 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
...-.|.+..++|++++|+..|+++++.+|.+.....-...-+..+ ++...++..+.+.....+ .
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~---G~~~~A~~~~eka~~p~n------------~ 100 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA---GRDQEVIDVYERYQSSMN------------I 100 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc---CCcHHHHHHHHHhccCCC------------C
Confidence 4566788999999999999999999999998853322111111112 344555555554432100 0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
........+.++...|++++|+++++++++.+|++..+.+.++.++...++.++|+..++++...+|+... . +.
T Consensus 101 ----~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~-l~ 174 (822)
T PRK14574 101 ----SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-Y-MT 174 (822)
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-H-HH
Confidence 11233445778888999999999999999999999888777788888999999999999999999998643 2 56
Q ss_pred HHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHH
Q 012265 193 RAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDID 237 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~ 237 (467)
++.++...++..+|+..|+++++..+ ++.++..++.++...|-..
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 67777778888779999999987655 5556555555555555333
No 52
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=2e-09 Score=108.24 Aligned_cols=263 Identities=13% Similarity=0.022 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC-ChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK-DVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
.+..|.++...|++++|..++++++...|.|..+..+ ..++....... ....+.+.+....+.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------- 109 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE--------------- 109 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC---------------
Confidence 4557899999999999999999999999988865543 22332232221 122222222111000
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH---HH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK---II 189 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~---~~ 189 (467)
.+.......+.+.+++..|++++|...+++++...|++..++...+.++...|++++|+..+++.+...|.+.. ..
T Consensus 110 -~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 110 -NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 01122355678899999999999999999999999999988889999999999999999999999998764322 12
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhH--H--H-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-CchHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT--V--A-TLVALKERAGDIDGAAAVLDSAIKWWLNAMTE-DNKLSV 262 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~--~--~-~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~-~~~~~~ 262 (467)
++.++.+++.+|++++|+.+|+++....+ .+.+ . . .+...+...|....+..+ +.+........+. ...+..
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHH
Confidence 35789999999999999999999865433 1111 1 1 223334445544333333 3333332211111 111222
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHhc-C---C----HHHHH---HHHHHhccCChhHHHHHH
Q 012265 263 IMQEAASFKLRHGREEDASHLFEELVKTH-G---S----IEALV---GLVTTSAHVDVDKAESYE 316 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~le~ll~~~-p---d----~~ala---~Lv~a~~~~d~~kA~~l~ 316 (467)
...+..+...|+.++|..+++.+.... . . ..+.+ .-+..+...|.+.|..++
T Consensus 268 --~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 268 --LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHH
Confidence 235777889999999999999987643 2 1 11222 223345677788886664
No 53
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=1.6e-10 Score=116.12 Aligned_cols=201 Identities=17% Similarity=0.062 Sum_probs=138.4
Q ss_pred hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchH---HHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265 28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADES---SFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL 104 (467)
Q Consensus 28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~---~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 104 (467)
+++...++.+|+++...|+.++|...|..+....+.+.. ..++.+..+.. .++...+...+.++....|+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~P~~--- 76 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI---AGDLPKALALLEQLLDDYPRD--- 76 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCc---
Confidence 456677889999999999999999999999888775533 22222222221 234555555554433322211
Q ss_pred HHHhhcCCCHHHHHHHHH---HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 105 ARVLDLRLSPKQREAIYA---NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 105 ~~~l~~kL~~~q~~~l~~---n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
..+.. ....+....+..+.+.+.+......+|+...+..+.+.++...|++++|+..++++++.
T Consensus 77 -------------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 77 -------------LLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred -------------HHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11222 22222333556666666666655667777667777888888999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA----TVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~----~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
.|++... +..++.+|...|++++|+..|++.++..+ .+. .+..++.+|..+|++++|+.+|++++.
T Consensus 144 ~p~~~~~-~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 144 NPDDAWA-VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCCcHH-HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9988654 47889999999999999999998886543 222 244688889999999999999988753
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.29 E-value=1.7e-10 Score=109.09 Aligned_cols=171 Identities=13% Similarity=0.008 Sum_probs=131.2
Q ss_pred hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265 28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV 107 (467)
Q Consensus 28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 107 (467)
..-...++++|..+...|++++|+..|+.++...|+++...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--------------------------------------- 70 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAE--------------------------------------- 70 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHH---------------------------------------
Confidence 33446789999999999999999999999999888553110
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhc--------CChhHHHHHHH
Q 012265 108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRE--------NKAGKAEELLG 176 (467)
Q Consensus 108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~--------~~~~~A~~~l~ 176 (467)
.++++.+.+++..|++++|+..++.++..+|++.. +++..+.++... |++++|++.++
T Consensus 71 -----------~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (235)
T TIGR03302 71 -----------QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQ 139 (235)
T ss_pred -----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 12445577777778888888888888888887665 455666666554 67778888888
Q ss_pred HHHHhCCCcHHHH----------------HHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCH
Q 012265 177 QFAEKLPDKSKII----------------LLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDI 236 (467)
Q Consensus 177 ~~l~~~P~~~~~~----------------~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~ 236 (467)
+++..+|++.... .+.+|.+|+.+|++.+|+..|+.+++..+ .+..+..++.+|...|++
T Consensus 140 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 140 ELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 8888888764321 13678899999999999999999986432 356788999999999999
Q ss_pred HHHHHHHHHHHH
Q 012265 237 DGAAAVLDSAIK 248 (467)
Q Consensus 237 ~~A~~~l~~al~ 248 (467)
++|..+++.+..
T Consensus 220 ~~A~~~~~~l~~ 231 (235)
T TIGR03302 220 DLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.29 E-value=2.5e-10 Score=125.17 Aligned_cols=194 Identities=10% Similarity=-0.013 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
...+..+++.++.|++++|+..|.++++.+|.+..+..-.+.++...|+.++|+..+++++...|..... .+.+|.+|.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~-llalA~ly~ 113 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRG-LASAARAYR 113 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHH-HHHHHHHHH
Confidence 3567889999999999999999999999999996443455566677899999999999999444444433 356688999
Q ss_pred HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265 199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 277 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~ 277 (467)
.+|++++|+.+|+++++.++ ++.++..++.+|...++.++|+..+++++... +..... ..++.++...++.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-------p~~~~~-l~layL~~~~~~~ 185 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-------PTVQNY-MTLSYLNRATDRN 185 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-------cchHHH-HHHHHHHHhcchH
Confidence 99999999999999998876 78888888999999999999999999987642 112222 2246666667788
Q ss_pred hHHHHHHHHHHHhcCC-HHHHHHHHHHhccCC-hhHHHHHHhcCCC
Q 012265 278 EDASHLFEELVKTHGS-IEALVGLVTTSAHVD-VDKAESYEKRLKP 321 (467)
Q Consensus 278 ~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d-~~kA~~l~~~L~~ 321 (467)
.+|+..|+++++.+|+ .+++..++.+.+... ...|.++++.-|-
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 7799999999999986 677788888877666 4688899887763
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.2e-09 Score=99.85 Aligned_cols=251 Identities=15% Similarity=0.116 Sum_probs=184.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 114 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~ 114 (467)
+-.+.-+......|+|.++|-.++..+|....+.+.+ .|++- ..+++..+++.-..+... ..+|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL-GnLfR--sRGEvDRAIRiHQ~L~~s------------pdlT~ 103 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL-GNLFR--SRGEVDRAIRIHQTLLES------------PDLTF 103 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH-HHHHH--hcchHHHHHHHHHHHhcC------------CCCch
Confidence 4456677888999999999999999988777777644 46643 334455554432222221 34677
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HH--
Q 012265 115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--II-- 189 (467)
Q Consensus 115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~-- 189 (467)
.|+.-+.+..+.=|+..|=+|.|..+|..+.. .|+... +.--+..+|....+|.+|+..-+++....|+.-. .+
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d-e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD-EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 78888888999999999999999999999874 344433 4445667888999999999999999888776422 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 268 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la 268 (467)
+--||+.++...+.+.|...+.+++..++ .-.+-..++.++...|++..|+..++.+++.. ...+..++..+-
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn------~~yl~evl~~L~ 256 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN------PEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC------hHHHHHHHHHHH
Confidence 22467777778999999999999987765 33445578999999999999999999988742 234445566677
Q ss_pred HHHHHCCChhHHHHHHHHHHHhcCCH---HHHHHHHHHhccC
Q 012265 269 SFKLRHGREEDASHLFEELVKTHGSI---EALVGLVTTSAHV 307 (467)
Q Consensus 269 ~~~l~~g~~~~A~~~le~ll~~~pd~---~ala~Lv~a~~~~ 307 (467)
.+|...|+.++....+....+.++.. .+++.++......
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGI 298 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh
Confidence 88899999999999999999888653 3455555544333
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.26 E-value=7.5e-10 Score=121.53 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=94.2
Q ss_pred HHHHHHcCCHHHHHHHHHhcccc--CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcC
Q 012265 125 VLLLLHANKMDQARELVAALPDM--FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~--~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g 201 (467)
...|...|++++|.++|+++... .|+... +......+.+.|++++|.+++..+++.. +.+.. +...|...|.+.|
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G 374 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFT-FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV-ANTALVDLYSKWG 374 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-ehHHHHHHHHHCC
Confidence 33444555555555555555432 232221 2222333455555566655555555543 12221 2355566666666
Q ss_pred ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265 202 HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS 281 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~ 281 (467)
++++|..+|+.+.+ ++...|..++..|.+.|+.++|+.+|+++... ...| +.. .+..+...+...|..++|.
T Consensus 375 ~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~P---d~~-T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 375 RMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAP---NHV-TFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred CHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC---CHH-HHHHHHHHHhcCCcHHHHH
Confidence 66666666665543 23334555666666666666666666665532 1111 111 1222344455666666666
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHhcc-CChhHHHHHHhcCC
Q 012265 282 HLFEELVKTH---GSIEALVGLVTTSAH-VDVDKAESYEKRLK 320 (467)
Q Consensus 282 ~~le~ll~~~---pd~~ala~Lv~a~~~-~d~~kA~~l~~~L~ 320 (467)
.+|+.+.+.. |+......++..+.. .+.+.|..+....|
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence 6666665432 444555555555543 33566666665554
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.26 E-value=1.2e-09 Score=115.47 Aligned_cols=259 Identities=14% Similarity=0.094 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
++-+|.+++..|++++|+.++.+|++++|.+...+..++.-+ -.. ++...++.-..-+. . |.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~Iy-Eqr--Gd~eK~l~~~llAA-----------H----L~ 203 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIY-EQR--GDIEKALNFWLLAA-----------H----LN 203 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHH-HHc--ccHHHHHHHHHHHH-----------h----cC
Confidence 455788999999999999999999999998887776543222 111 22333322211110 1 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC----------
Q 012265 114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP---------- 183 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P---------- 183 (467)
+..+ ..+.-.+-+..+.|.+++|+-++.++++.+|.+.....-.+.+|.+.|+...|...+.+++...|
T Consensus 204 p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 204 PKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 1111 23334444444444444444444444444444444444444444444444444444444444444
Q ss_pred -----------------------------C--cHHHHHHHHHHHHHHcCChHHHHHHHhccc------------------
Q 012265 184 -----------------------------D--KSKIILLARAQVAAAANHPFIAAESLAKIP------------------ 214 (467)
Q Consensus 184 -----------------------------~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~------------------ 214 (467)
+ ..+.+ .+++.+|+....++.|...+....
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~-ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDL-NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 1 11112 455666666666665554432110
Q ss_pred ---------------------------------------------c--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 215 ---------------------------------------------D--IQHMPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 215 ---------------------------------------------~--~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
. ....++++..++.+|...|.+.+|+.+|..++
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 0 00134555667778888888888888888777
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc-cCChhHHHHHHhc
Q 012265 248 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA-HVDVDKAESYEKR 318 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~-~~d~~kA~~l~~~ 318 (467)
... + .+...+|..+|.+|...|.+++|+..|++++...|+ .++.+.|..-+- ..++++|.+.+.+
T Consensus 442 ~~~----~--~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 442 NRE----G--YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cCc----c--ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 531 1 222446778999999999999999999999999986 688888877775 4557888766544
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.26 E-value=3.3e-10 Score=104.36 Aligned_cols=159 Identities=14% Similarity=0.042 Sum_probs=122.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 203 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~ 203 (467)
-..+|+..|+++......+.+. .|.. -+...++.++++..|++.+..+|++...+ +.||++|...|++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w-~~Lg~~~~~~g~~ 89 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQW-ALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCH
Confidence 4567888999888765543332 1211 01125677899999999999999998865 9999999999999
Q ss_pred HHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCC--HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265 204 FIAAESLAKIPDIQH-MPATVATLVAL-KERAGD--IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279 (467)
Q Consensus 204 ~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~--~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~ 279 (467)
++|+..|++++.+.+ ++.++..++.+ |...|+ +++|..+|++++... +.....+..+|..++..|++++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-------ANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHH
Confidence 999999999998876 78888888885 577787 599999999999752 2222345668999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 012265 280 ASHLFEELVKTHGSIEALVGLV 301 (467)
Q Consensus 280 A~~~le~ll~~~pd~~ala~Lv 301 (467)
|+..|+++++..|..+..+.++
T Consensus 163 Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 163 AIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999986433333443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-09 Score=110.28 Aligned_cols=256 Identities=14% Similarity=0.109 Sum_probs=199.3
Q ss_pred HHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhH
Q 012265 7 IFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVND 86 (467)
Q Consensus 7 ~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~ 86 (467)
+...||.+.|+.+.+..+ ..| +++| ++...|+.-+=.-+=.++....|+.+..++..+.=+++++ +..+
T Consensus 262 ~c~kit~~lle~dpfh~~-----~~~--~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~---k~se 330 (611)
T KOG1173|consen 262 ECLKITEELLEKDPFHLP-----CLP--LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG---KYSE 330 (611)
T ss_pred HHHHHhHHHHhhCCCCcc-----hHH--HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc---CcHH
Confidence 445566666665554332 234 4567 7888999888888888899999988877765555555553 4567
Q ss_pred HHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC
Q 012265 87 SLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN 166 (467)
Q Consensus 87 a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~ 166 (467)
|.+.+.+... ++.. ....+...+..+...|.-|+|...+..+.+.+|+...+.++.+.-|.+.+
T Consensus 331 ARry~SKat~-----------lD~~-----fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 331 ARRYFSKATT-----------LDPT-----FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHHhh-----------cCcc-----ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 7777765432 2222 22356677888888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc----CCC-C---hhHHHHHHHHHHHcCCHHH
Q 012265 167 KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD----IQH-M---PATVATLVALKERAGDIDG 238 (467)
Q Consensus 167 ~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~-~---p~~~~~l~~ly~~~g~~~~ 238 (467)
..+-|.+.+.+++...|.++-.. --+|-++...+.|.+|..+|+..+. +.. . ..++..||.+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~-~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVL-HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhh-hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999999999999998654 6788888899999999999999873 111 1 1246789999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHH
Q 012265 239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEAL 297 (467)
Q Consensus 239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~al 297 (467)
|+..+++++..- +.....+..+|.++.-.|+++.|++.|.++|.+.|+....
T Consensus 474 AI~~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 474 AIDYYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HHHHHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 999999999752 2223456668999999999999999999999999986443
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.25 E-value=1.3e-09 Score=111.31 Aligned_cols=249 Identities=16% Similarity=0.118 Sum_probs=191.4
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..|+..|--+...|+..+|..++..++..+|++..+.+.+ .-+.. ....+..+...|.+.....
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa-vKle~--en~e~eraR~llakar~~s------------- 648 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA-VKLEF--ENDELERARDLLAKARSIS------------- 648 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH-HHHhh--ccccHHHHHHHHHHHhccC-------------
Confidence 4567777888888999999999999999999887777643 22211 1123333333332221110
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
-..-+++-.+.+.-..+..++|++++++.++.||+..-.++++++++.+.++.+.|...|..-++..|..+..+ +
T Consensus 649 ----gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW-l 723 (913)
T KOG0495|consen 649 ----GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW-L 723 (913)
T ss_pred ----CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH-H
Confidence 01235667788888899999999999999999999999999999999999999999999999999999998765 9
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------------
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM---------------- 254 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~---------------- 254 (467)
.|+.+-...|+.-.|..+|++..--. .+..+|...+.+-.+.|..+.|..++.+|++..+.+.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccc
Confidence 99999999999999999999986333 3667888888899999999999999998886432210
Q ss_pred ----------cCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265 255 ----------TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS 304 (467)
Q Consensus 255 ----------~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~ 304 (467)
..++. ++..+|.++....+++.|.+.|+++++.+|| -++++.+..-+
T Consensus 804 Tks~DALkkce~dph---Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 804 TKSIDALKKCEHDPH---VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred hHHHHHHHhccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 11222 3555787777888999999999999999988 47888776655
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.24 E-value=4.7e-10 Score=120.89 Aligned_cols=157 Identities=11% Similarity=0.054 Sum_probs=130.8
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
.++...+..+...+|.+..+++++|.+....|.+++|+.+++.+++..|++..+ +..++.++.+.+++++|+.++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-FILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhccHHHHHHHHHHHh
Confidence 334444555667799999999999999999999999999999999999999875 5899999999999999999999999
Q ss_pred cCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 215 DIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 215 ~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+..+ ++.....++.++.+.|++++|+.+|++++.- . +....++..+|..+...|+.++|...|+++++...+
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----~---p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ----H---PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc----C---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 8776 7778889999999999999999999999862 1 222345677899999999999999999999998743
Q ss_pred -HHHHHH
Q 012265 294 -IEALVG 299 (467)
Q Consensus 294 -~~ala~ 299 (467)
...+..
T Consensus 221 ~~~~~~~ 227 (694)
T PRK15179 221 GARKLTR 227 (694)
T ss_pred chHHHHH
Confidence 444333
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=116.72 Aligned_cols=186 Identities=13% Similarity=0.089 Sum_probs=158.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
|-.+..++..|.+.+|.-+|+..++.+|++..++..++.++...++-..|+..|+++++.+|++..++ ..||--|..+|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaL-maLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEAL-MALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHH-HHHHHHHhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred ChHHHHHHHhcccc------------------------------------------CC--CChhHHHHHHHHHHHcCCHH
Q 012265 202 HPFIAAESLAKIPD------------------------------------------IQ--HMPATVATLVALKERAGDID 237 (467)
Q Consensus 202 ~~~~A~~~L~~~~~------------------------------------------~~--~~p~~~~~l~~ly~~~g~~~ 237 (467)
.-.+|+.+|.+.+. .. .+|++...|+-||...|+++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999997731 00 24566777888888899999
Q ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccCC-hhHHHHH
Q 012265 238 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVD-VDKAESY 315 (467)
Q Consensus 238 ~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d-~~kA~~l 315 (467)
.|+.+|+.|+.. . |+-..+|..+|..+....+.++|+..|.+++++.|. ..+..+|..++.... ...|..+
T Consensus 448 raiDcf~~AL~v----~---Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 448 RAVDCFEAALQV----K---PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHhc----C---CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999974 2 222457999999999999999999999999999987 577788877776555 4555444
No 64
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.23 E-value=3.9e-10 Score=98.63 Aligned_cols=129 Identities=21% Similarity=0.220 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLAR 193 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~L 193 (467)
...|..++..+..++.+.+...++.+.+.+|++ ..+.+..|.+++..|++++|+..|+.++...|+.. ..+++.|
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 345566677778999999999999999999998 44577889999999999999999999999887653 3456889
Q ss_pred HHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
|.+++.+|++++|+..|+.+....+.+.+...++.+|..+|++++|+..|++|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999998876555677778889999999999999999998874
No 65
>PLN03077 Protein ECB2; Provisional
Probab=99.23 E-value=4.9e-09 Score=117.80 Aligned_cols=186 Identities=12% Similarity=0.096 Sum_probs=128.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcHHHH------------
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-LPDKSKII------------ 189 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P~~~~~~------------ 189 (467)
.....|...|++++|.++|+.+... + ...+-.....|.+.|++++|+.+++++... .|+.....
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~--d-~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEK--D-VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCC--C-eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH
Confidence 3455677888999999999888653 2 223334445567888888888888887654 34432211
Q ss_pred ---------------------HHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 190 ---------------------LLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 190 ---------------------~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
...|...|.+.|++++|..+|+.+ ..+...|..++..|.+.|+.++|+.+|+++..
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 113447788888888888888876 34556677888888888999999998888765
Q ss_pred HHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CCHHHHHHHHHHhcc-CChhHHHHHHhcCC
Q 012265 249 WWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GSIEALVGLVTTSAH-VDVDKAESYEKRLK 320 (467)
Q Consensus 249 ~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd~~ala~Lv~a~~~-~d~~kA~~l~~~L~ 320 (467)
. ...|+...+. .+...+...|..++|..+|+.+...+ |+......++.++.. .+.+.|+.+.+.+|
T Consensus 583 ~--g~~Pd~~T~~----~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 583 S--GVNPDEVTFI----SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred c--CCCCCcccHH----HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 2 2223322332 23345777888888988888888443 677777888888755 44788888888775
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.5e-09 Score=102.28 Aligned_cols=260 Identities=12% Similarity=0.029 Sum_probs=182.7
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
.++|+.++.+.+..|.+-=+|++- ...++....+-.+---+-+.+...+---+.+..++ .|++++++ +-
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdl--------ySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI-aNYYSlr~--eH 346 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDL--------YSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII-ANYYSLRS--EH 346 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHH--------HhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee-hhHHHHHH--hH
Confidence 367788888887776655444321 12222222222221222233344433334455443 36666654 33
Q ss_pred hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265 85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 164 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~ 164 (467)
..+...|.+....+|+ ...++.-.+.=|+.+.+...|++.+..+++.+|.+..+++-.++.|..
T Consensus 347 EKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred HHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 4455555544332221 224555668888999999999999999999999999999999999998
Q ss_pred cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265 165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVL 243 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l 243 (467)
.+-.-=|+=.+++++...|+|...+ .+||+.|.+.++.++|+.+|.+++.... ....+..|+.+|.+.++.++|...|
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw-~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLW-VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8888899999999999999998765 9999999999999999999999987654 3445668999999999999999999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
++-+.-.......++....+..-++..+.+.+++++|..+...++..++
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 9988754221112232222333379999999999999988888776543
No 67
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.18 E-value=3e-09 Score=116.82 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=100.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHcC
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK--LPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~Laql~~~~g 201 (467)
....|...|+++.|.++|+.+.. |+ ...+-.....|.+.|+.++|+++++++... .|+... +..+...+...|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~--~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~a~~~~g 440 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR--KN-LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT--FLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC--CC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHhcCC
Confidence 34455566667777777776653 22 222333444556667777777777766653 344432 245556666677
Q ss_pred ChHHHHHHHhccccC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265 202 HPFIAAESLAKIPDI---QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE 278 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~---~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~ 278 (467)
..++|..+|+.+.+. .++...+..++.+|.+.|++++|..+++++- -.+.. ..|..+...+..+|+.+
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--------~~p~~-~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--------FKPTV-NMWAALLTACRIHKNLE 511 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--------CCCCH-HHHHHHHHHHHHcCCcH
Confidence 777777777666531 2233345566667777777777766665431 01111 13444455566677777
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHhcc-CChhHHHHHHh
Q 012265 279 DASHLFEELVKTHGS-IEALVGLVTTSAH-VDVDKAESYEK 317 (467)
Q Consensus 279 ~A~~~le~ll~~~pd-~~ala~Lv~a~~~-~d~~kA~~l~~ 317 (467)
.|..++++++...|+ ......|+..|+. ...+.|.++.+
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 777777777666654 3344455555543 33566655544
No 68
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=1.7e-09 Score=107.80 Aligned_cols=150 Identities=23% Similarity=0.137 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 196 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql 196 (467)
...++|..++.++..|+++.|+..+..+++..|+|+....+.+.+++..|+..+|++.+++++..+|+... +.+.+|+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-l~~~~a~a 383 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL-LQLNLAQA 383 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH-HHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999854 56999999
Q ss_pred HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265 197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 275 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g 275 (467)
|++.|++.+|+..|...+..++ +|..|..|+..|..+|+..+|... .+..+...|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------------~AE~~~~~G 439 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------------RAEGYALAG 439 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------------HHHHHHhCC
Confidence 9999999999999999875544 889999999999999988755322 355566788
Q ss_pred ChhHHHHHHHHHHHhc
Q 012265 276 REEDASHLFEELVKTH 291 (467)
Q Consensus 276 ~~~~A~~~le~ll~~~ 291 (467)
++++|+..+..+.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999888888776
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=6.5e-09 Score=99.16 Aligned_cols=250 Identities=13% Similarity=0.105 Sum_probs=179.4
Q ss_pred hHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH------HHh--h----hhhc---cCCCChhHHHH
Q 012265 25 DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV------AVN--N----LVAL---KGPKDVNDSLK 89 (467)
Q Consensus 25 e~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v------a~n--n----l~~l---~~~~~~~~a~~ 89 (467)
+..+++..+++|.|.|+.++|.+++|+.-|+.+|..+|++....-. +.. + +.+. ++..++.....
T Consensus 100 elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 100 ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3456788899999999999999999999999999999865433210 000 0 0111 11223333333
Q ss_pred hhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh
Q 012265 90 KLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG 169 (467)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~ 169 (467)
.+... . +=...++..++-.|...|....|+.-+..+.++..++....+-.+.+++.-|+..
T Consensus 180 ~llEi----------------~---~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 180 HLLEI----------------Q---PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhc----------------C---cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 33221 0 0012355667889999999999999999999999999999888888999999999
Q ss_pred HHHHHHHHHHHhCCCcHH-----------HHHHHHHHHHHHcCChHHHHHHHhccccCCCC-hh----HHHHHHHHHHHc
Q 012265 170 KAEELLGQFAEKLPDKSK-----------IILLARAQVAAAANHPFIAAESLAKIPDIQHM-PA----TVATLVALKERA 233 (467)
Q Consensus 170 ~A~~~l~~~l~~~P~~~~-----------~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p~----~~~~l~~ly~~~ 233 (467)
.++..++++|+.+|++-. .-.+--+.-.++.++|.+++...++++...+. +. ....+..+|...
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 999999999999998632 00122344567889999999999999875542 21 234567788889
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHH
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGL 300 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~L 300 (467)
+++.+|+....+++... + ++. ..+..-|..|+-...|+.|+.-|+++.+.+++ ..+--++
T Consensus 321 ~~~~eAiqqC~evL~~d----~--~dv-~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID----P--DDV-QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred CCHHHHHHHHHHHHhcC----c--hHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999998752 1 222 34555689999999999999999999999965 3343343
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=7.8e-10 Score=114.08 Aligned_cols=197 Identities=19% Similarity=0.194 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCc
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDM--------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----PDK 185 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~--------~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----P~~ 185 (467)
.+..+.+..|...|+++.|...++..+.. +|.-....-..|.+|...+++.+|+.+|++++... +++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556999999999999999999987765 44333333346788899999999999999998753 222
Q ss_pred H--HHHHHHHHHHHHHcCChHHHHHHHhccccCC------CChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012265 186 S--KIILLARAQVAAAANHPFIAAESLAKIPDIQ------HMPA---TVATLVALKERAGDIDGAAAVLDSAIKWWLNAM 254 (467)
Q Consensus 186 ~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~------~~p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~ 254 (467)
+ ...+..||.+|..+|++.+|..++++++++. ..+. .+..++.++..++++++|+.++.+++..+.+.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2234788999999999999999999997642 1333 356789999999999999999999999998766
Q ss_pred cCCc-hHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC------C---HHHHHHHHHHhccCC-hhHHHHH
Q 012265 255 TEDN-KLSVIMQEAASFKLRHGREEDASHLFEELVKTHG------S---IEALVGLVTTSAHVD-VDKAESY 315 (467)
Q Consensus 255 ~~~~-~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p------d---~~ala~Lv~a~~~~d-~~kA~~l 315 (467)
+.++ .+......+|.+|+.+|++++|.++|++++...- + ...+..|..+|.... ...|..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 6555 7777888899999999999999999999998751 1 244666777775444 3445544
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.14 E-value=2.3e-08 Score=102.36 Aligned_cols=266 Identities=18% Similarity=0.137 Sum_probs=175.2
Q ss_pred HHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHH
Q 012265 8 FVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDS 87 (467)
Q Consensus 8 A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a 87 (467)
++.|.+.++.- ++.+||... .|+--|..+.+.+-++=|..+|..+|.-+|.+..+.+-+..- -..++.....
T Consensus 498 cQAIi~avigi-gvEeed~~~----tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~---ek~hgt~Esl 569 (913)
T KOG0495|consen 498 CQAIIRAVIGI-GVEEEDRKS----TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMF---EKSHGTRESL 569 (913)
T ss_pred HHHHHHHHHhh-ccccchhHh----HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHH---HHhcCcHHHH
Confidence 34444444432 244555553 345567778888888888888888888888777766533211 0001111111
Q ss_pred HHhhhhhhhhhhh-----------------HHH----HHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 012265 88 LKKLDRIKEKDMQ-----------------NFQ----LARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPD 146 (467)
Q Consensus 88 ~~~l~~~~~~~~~-----------------~~~----~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~ 146 (467)
.-.|.+++...|. -.+ +...++. .+....|++-...+...+.+++.|+.+|.+...
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~---~pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA---NPNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh---CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 1111111111000 000 0001100 012345666667777788888888888888776
Q ss_pred cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHH
Q 012265 147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVAT 225 (467)
Q Consensus 147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~ 225 (467)
..|. ...+.=.+.+..-++..++|+++|+++++.+|+.... ++.++||+.+.++.+.|...|..-+..- +.+-+|..
T Consensus 647 ~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl-~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 647 ISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL-WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred cCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH-HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 5543 3333334445566888999999999999999998775 4899999999999999999999887654 36678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
|+.|-...|+.-.|...|+++.-. ++ ....+|.+...+-++.|..+.|..++-++|+..|.
T Consensus 725 LakleEk~~~~~rAR~ildrarlk---NP----k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLK---NP----KNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhc---CC----CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 999999999999999999998753 22 22346777788889999999999999999998876
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.12 E-value=3.2e-09 Score=114.54 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
...+++.+.+....|.+++|...++.++...|++..+.+..+.++.+.+++++|+..+++++...|++... ++.+|.++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~-~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE-ILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH-HHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999876 49999999
Q ss_pred HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
...|++++|+.+|++++...+ .+.++..++.++...|+.++|...|++|+...
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999997443 56788889999999999999999999998763
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.8e-09 Score=109.42 Aligned_cols=231 Identities=10% Similarity=0.032 Sum_probs=165.9
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 114 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~ 114 (467)
+-.|-.+.+.|++.+|.-.|+.++..+|.+..++..++.--.....+.++..|+++...+. |+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~-------------- 351 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD---PT-------------- 351 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---Cc--------------
Confidence 3468899999999999999999999999999998755322111223446667776665442 22
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH--HHH-----HHHhcCChhHHHHHHHHHHHhCC--Cc
Q 012265 115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL--QAA-----VLVRENKAGKAEELLGQFAEKLP--DK 185 (467)
Q Consensus 115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll--~a~-----l~~~~~~~~~A~~~l~~~l~~~P--~~ 185 (467)
...++..+++-|.-.|--.+|.+.+...+..+|.......- ... -.........-.++|.++...+| .+
T Consensus 352 --NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~D 429 (579)
T KOG1125|consen 352 --NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKID 429 (579)
T ss_pred --cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 12355566777777776777888888777666543221100 000 00000011122356666777778 45
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265 186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 264 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll 264 (467)
++ ++..|+-||.-.|+|+.|+.+|+.++.+++ +--+|..|++.+.-..+.++|+..|++|++.. |.+....
T Consensus 430 pd-vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-------P~yVR~R 501 (579)
T KOG1125|consen 430 PD-VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-------PGYVRVR 501 (579)
T ss_pred hh-HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-------CCeeeee
Confidence 55 568999999999999999999999999887 55679999999999999999999999999874 3444456
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 265 QEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
..+|-.++..|.|++|+.+|-.+|...+
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 7789999999999999999999998763
No 74
>PLN03077 Protein ECB2; Provisional
Probab=99.10 E-value=2.2e-08 Score=112.51 Aligned_cols=295 Identities=12% Similarity=0.000 Sum_probs=168.6
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc--CCCchHHHHHHHhhhhhccCCC
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPK 82 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~--~p~d~~~~~va~nnl~~l~~~~ 82 (467)
+..|.+++.+.-..+ . ..|.-+-..|.+.|+.++|..+|.++... .|+......++ ......+...
T Consensus 238 ~~~A~~lf~~m~~~d----------~-~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll-~a~~~~g~~~ 305 (857)
T PLN03077 238 VVSARLVFDRMPRRD----------C-ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-SACELLGDER 305 (857)
T ss_pred HHHHHHHHhcCCCCC----------c-chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCChH
Confidence 567888887654322 1 33566667788899999999999998765 34333222222 1111111111
Q ss_pred ChhHHHHhhhhhhhhhhh---------------HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc
Q 012265 83 DVNDSLKKLDRIKEKDMQ---------------NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM 147 (467)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~---------------~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~ 147 (467)
...+.+..+.+. +..++ ....+..+=..+..+ ....+......|...|++++|.++|+.+...
T Consensus 306 ~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 306 LGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 111111111110 00000 000000000111100 0112223344566667777777777766433
Q ss_pred --CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHH
Q 012265 148 --FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVAT 225 (467)
Q Consensus 148 --~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~ 225 (467)
.|+......+. ..+.+.|++++|.+++..+.+........+...|...|.+.|++++|..+|+++.+- +...|..
T Consensus 384 g~~Pd~~t~~~ll-~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d~vs~~~ 460 (857)
T PLN03077 384 NVSPDEITIASVL-SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--DVISWTS 460 (857)
T ss_pred CCCCCceeHHHHH-HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CeeeHHH
Confidence 35554433322 245667777777777777766543322234467888999999999999999988642 3345777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH--------------------------------------------
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS-------------------------------------------- 261 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-------------------------------------------- 261 (467)
+...|.+.|+.++|+.+|+++... ..|+...+.
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~---~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLT---LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC---CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 888888888888888888876531 111111111
Q ss_pred -----------------HHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHHhccCC-hhHHHHHHhcC
Q 012265 262 -----------------VIMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTSAHVD-VDKAESYEKRL 319 (467)
Q Consensus 262 -----------------~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a~~~~d-~~kA~~l~~~L 319 (467)
..|..+...|.++|+.++|..+|+++.... ||..+...++.++++.. .+.|..+...+
T Consensus 538 G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 538 GRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred CCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 124445666788999999999999988754 78777777888887655 68887776544
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.10 E-value=3.5e-09 Score=97.54 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=108.1
Q ss_pred cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHcCC--hHHHH
Q 012265 131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV-AAAANH--PFIAA 207 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql-~~~~g~--~~~A~ 207 (467)
.++.+++...++..+..+|++..+++..|.++...|++++|+..|.+++...|++.... +.+|.+ |...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~-~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELY-AALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCCCcHHHH
Confidence 45678888899999999999999999999999999999999999999999999998764 899996 477788 59999
Q ss_pred HHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 208 ESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 208 ~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
.+|++++..++ ++.+++.++..+...|++++|+..+++++...
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999998876 77889999999999999999999999999863
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=7.6e-09 Score=95.86 Aligned_cols=171 Identities=18% Similarity=0.096 Sum_probs=141.6
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265 137 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI 216 (467)
Q Consensus 137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~ 216 (467)
+...+-.....+|++..+ ...+..+...|+-+.+...+.+.+..+|.+...+ ..++...+..|+|.+|+..|.++...
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll-~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL-AAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHH-HHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 445555556678998888 7777778889999999999999999999987643 56888999999999999999999988
Q ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-CH
Q 012265 217 QH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG-SI 294 (467)
Q Consensus 217 ~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-d~ 294 (467)
.+ ++.+++.++.+|.+.|++++|...|.++++...+ ++ .++.++|..++-.|+++.|..++..+....+ |.
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----~p---~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN----EP---SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC----Cc---hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 75 8899999999999999999999999999998533 22 2466789999999999999999999997765 56
Q ss_pred HHHHHHHHHh-ccCChhHHHHHH
Q 012265 295 EALVGLVTTS-AHVDVDKAESYE 316 (467)
Q Consensus 295 ~ala~Lv~a~-~~~d~~kA~~l~ 316 (467)
.+..+|++.. ...|+..|+...
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhc
Confidence 6667777766 567788887664
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=5.2e-09 Score=99.26 Aligned_cols=222 Identities=13% Similarity=0.046 Sum_probs=181.3
Q ss_pred chHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC
Q 012265 3 LMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK 82 (467)
Q Consensus 3 ~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~ 82 (467)
-|+..|++..+.+|+...+ ....+-|+.||+.......|+..|.+.+...|.|....+
T Consensus 237 gm~r~AekqlqssL~q~~~---------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~------------- 294 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPH---------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL------------- 294 (478)
T ss_pred cChhhhHHHHHHHhhcCCc---------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh-------------
Confidence 4889999999999986543 334567899999999999999999999988886643322
Q ss_pred ChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHH
Q 012265 83 DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVL 162 (467)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~ 162 (467)
..+.++-.+++.+.|.+++..+++.+|.++++.--.|.-|
T Consensus 295 ----------------------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 295 ----------------------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred ----------------------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 2244455567788899999999999999998766666667
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDG 238 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~ 238 (467)
.-.++.+-|+..|++++...-.+++. ...++-..+-.++++-++..|++++..-- ..++|..|+.+....||+..
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speL-f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPEL-FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL 413 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHH-HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence 78999999999999999987777664 47788888889999999999999985322 45689999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
|...|+-++.. +++....+..+|-+..+.|+.++|..+|..+-...|+.
T Consensus 414 A~rcfrlaL~~-------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 414 AKRCFRLALTS-------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHHHHhcc-------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 99999988864 34445678888999999999999999999998888873
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-08 Score=99.86 Aligned_cols=166 Identities=17% Similarity=0.110 Sum_probs=138.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH-----------
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII----------- 189 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~----------- 189 (467)
.+-.+.++...|.++.|....-.++++++.+..+.++.+.++.-..+.+.|+..+++.+...|+....-
T Consensus 172 ~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 172 KLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHH
Confidence 345677888899999999999999999999999999999999999999999999999999999864421
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 264 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll 264 (467)
.-.-|.-..+.|+|..|.++|..++.+++ +..++...+.+..+.|+..+|+.-.+.|+.. ++.+...+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-------D~syikal 324 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-------DSSYIKAL 324 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------CHHHHHHH
Confidence 12335567789999999999999998775 2234667788999999999999999999875 23444455
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 265 QEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
...|.+++..+++++|++.|+++++...+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55699999999999999999999998754
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.02 E-value=7.3e-09 Score=88.97 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=98.4
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
..++.++..+|++..+.+..+..++..|++++|+..++.++..+|++.... ..+|++|...|++++|+.+|++++...+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYW-LGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457778888999988888888889999999999999999999999987754 8899999999999999999999987765
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
++.++..++.+|...|++++|+..|+.++...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 67788889999999999999999999998864
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=6.1e-09 Score=90.90 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=73.7
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
..+++++..+|++ +...+.++...|++++|+..|+.++..+|.+.... ..+|.++...|++++|+..|++++.+++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH-IALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3455566666664 23345666677777777777777777777776543 6777777777777777777777776654
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
++..+..++.++...|++++|+..|+.++..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666777777777777777777777777764
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=1.9e-07 Score=89.37 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=178.5
Q ss_pred CChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhh
Q 012265 21 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ 100 (467)
Q Consensus 21 ~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~ 100 (467)
.+++|++.+ +.++--++..|.+..|+..|..++..+|++-.+++--+.-++++++..-...-+.++..+
T Consensus 33 ~~~advekh-----lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------ 101 (504)
T KOG0624|consen 33 ASPADVEKH-----LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL------ 101 (504)
T ss_pred CCHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc------
Confidence 356777654 457888999999999999999999999988777775556666676543332223333221
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH-----H----------HHHHHHHhc
Q 012265 101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL-----L----------LQAAVLVRE 165 (467)
Q Consensus 101 ~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~-----l----------l~a~l~~~~ 165 (467)
| +....+...++.++|.+|++++|..-|+.++..+|.+.... + -+...++-.
T Consensus 102 ----------K---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 102 ----------K---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred ----------C---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 2 12335667889999999999999999999999998653211 1 111223467
Q ss_pred CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 012265 166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLD 244 (467)
Q Consensus 166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~ 244 (467)
|+...|+..+.++++..|=+... +...|..|+..|....|+.-++.+..+.. +...++.+..|+...|+.+.++..++
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l-~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASL-RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHH-HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 89999999999999999987764 57889999999999999999999876653 56677788999999999999999999
Q ss_pred HHHHHHHHhccCCchH------HHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 245 SAIKWWLNAMTEDNKL------SVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 245 ~al~~~~~~~~~~~~~------~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+.+.+.+.+...-+.+ ...+. -+.-..+.+++.++++..+++++.+|.
T Consensus 248 ECLKldpdHK~Cf~~YKklkKv~K~le-s~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 248 ECLKLDPDHKLCFPFYKKLKKVVKSLE-SAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHccCcchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 8886532211110111 11121 244456678888888888888887775
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=4.2e-09 Score=91.94 Aligned_cols=109 Identities=9% Similarity=-0.070 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
.++.+.++...|++++|...|..++..+|.+..++...|.++...|++++|+..|++++..+|++.... +.+|.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~-~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPV-YQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHc
Confidence 557899999999999999999999999999999999999999999999999999999999999998764 9999999999
Q ss_pred CChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265 201 NHPFIAAESLAKIPDIQH-MPATVATLVALK 230 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly 230 (467)
|++++|+..|+.++.+.+ ++..+..++.+.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999998765 566665544433
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=6.1e-08 Score=101.14 Aligned_cols=256 Identities=20% Similarity=0.181 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccC--CCChhHHHHhhhhhhhhhhhHHHHH----
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKG--PKDVNDSLKKLDRIKEKDMQNFQLA---- 105 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~--~~~~~~a~~~l~~~~~~~~~~~~~~---- 105 (467)
.+.-..|.++..+|++++|..+|..+|..+|+|...+......+....+ ..+.......+..+....|.. ...
T Consensus 39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s-~~~~rl~ 117 (517)
T PF12569_consen 39 AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS-DAPRRLP 117 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc-cchhHhh
Confidence 5667899999999999999999999999999988777533222210101 111111111222211111100 000
Q ss_pred ------HHhhcCCCHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcccc------C---------CCCc--hHH
Q 012265 106 ------RVLDLRLSPKQ-------REAIYANRVLLLLHANKMDQARELVAALPDM------F---------PDSV--MPL 155 (467)
Q Consensus 106 ------~~l~~kL~~~q-------~~~l~~n~all~l~~~~~~~A~~~~~~l~~~------~---------P~~~--~~~ 155 (467)
+.+..++..+= -..+..|.--+|-...+.+-...++...... + |... ..+
T Consensus 118 L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~ 197 (517)
T PF12569_consen 118 LDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL 197 (517)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence 00000000000 0011122222222223333223333332211 1 1111 234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG 234 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g 234 (467)
++.|+.|...|++++|+..+.++++..|..++. +++.|.||-..|++.+|..+++.+-.++. +--+-...+..+++.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el-y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL-YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 678888889999999999999999999999875 59999999999999999999999987775 3344556788888999
Q ss_pred CHHHHHHHHHHHHHHHHHh-cc-C---CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 235 DIDGAAAVLDSAIKWWLNA-MT-E---DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 235 ~~~~A~~~l~~al~~~~~~-~~-~---~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
++++|...+..-.. .. .+ . +-+..++..+.|..|.+.|++..|+..|..+.+.+.
T Consensus 277 ~~e~A~~~~~~Ftr---~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 277 RIEEAEKTASLFTR---EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred CHHHHHHHHHhhcC---CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999887764221 11 00 0 113455667789999999999999999999998763
No 84
>PLN02789 farnesyltranstransferase
Probab=98.99 E-value=1.2e-07 Score=93.49 Aligned_cols=193 Identities=13% Similarity=0.014 Sum_probs=141.5
Q ss_pred HHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265 37 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 116 (467)
Q Consensus 37 lA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q 116 (467)
+--++...++.++|+.++.+++..+|++..+...-...+..++ .+..+++..+.++...+++
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npk---------------- 104 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPK---------------- 104 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCc----------------
Confidence 3445788999999999999999999998887764433333332 1344555555443332222
Q ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKM--DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~--~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
.-.++.+++.++...+.. +.+...++.++..+|.+..++...+-++...|++++|+..+.++++.+|.+..++ ...+
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW-~~R~ 183 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW-NQRY 183 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH-HHHH
Confidence 123577777777777763 7788999999999999999999999999999999999999999999999987764 6777
Q ss_pred HHHHHc---CCh----HHHHHHHhccccCCC-ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 012265 195 QVAAAA---NHP----FIAAESLAKIPDIQH-MPATVATLVALKER----AGDIDGAAAVLDSAIK 248 (467)
Q Consensus 195 ql~~~~---g~~----~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~ 248 (467)
.++... |.+ ++++....+++...+ +...+..+..++.. .++..+|+..+.+++.
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 776654 333 467777778877665 66778788888877 3455678887777664
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=6.1e-08 Score=101.21 Aligned_cols=237 Identities=16% Similarity=0.104 Sum_probs=173.3
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC--
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP-- 81 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~-- 81 (467)
-|..|.+.|++.|.-.. .+ -++.|.-+|.|+..++++.+|+.+.+.++...+.|......-..--..+++.
T Consensus 493 ~l~sAl~~~~eaL~l~~--~~-----~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 493 QLTSALDYAREALALNR--GD-----SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred hHHHHHHHHHHHHHhcC--Cc-----cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 46788899999998521 11 2366788999999999999999999999998887543332110000001111
Q ss_pred -----------------------------------------CChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC-------
Q 012265 82 -----------------------------------------KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS------- 113 (467)
Q Consensus 82 -----------------------------------------~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~------- 113 (467)
.+.....+++..+..... +. ...+.+|.
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~-~~---~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL-KS---AGSELKLPSSTVLPG 641 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh-hh---cccccccCcccccCC
Confidence 111111222211111000 00 00001111
Q ss_pred ----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265 114 ----PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189 (467)
Q Consensus 114 ----~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~ 189 (467)
..-...++...+.+++..+..++|..++.++.+.+|-....+.+.|.++...|++.+|...|..++..+|+++...
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence 0001235667788899999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHcCChHHHHH--HHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAE--SLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~--~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
..+|.++++.|+..-|.. .|..++.+++ ++.+|+.++.++..+|+.+.|..+|..+++....
T Consensus 722 -~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 722 -TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred -HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 899999999999988888 9999999887 8999999999999999999999999999987543
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.94 E-value=1.2e-08 Score=87.52 Aligned_cols=116 Identities=14% Similarity=-0.001 Sum_probs=98.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 173 ELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 173 ~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
..|++++..+|++... .+.+|..++..|++++|...|+.++...+ ++.++..++.+|..+|++++|+..|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQ-IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hhHHHHHcCChhhHHH-HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 4678899999998765 48999999999999999999999988665 77888899999999999999999999988752
Q ss_pred HhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHH
Q 012265 252 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA 296 (467)
Q Consensus 252 ~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~a 296 (467)
+.+ ...+..+|.++...|++++|...|+.+++.+|+...
T Consensus 82 ---p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 ---PDD---PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ---CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 212 234556899999999999999999999999987533
No 87
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.94 E-value=5.9e-08 Score=89.81 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLA 192 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~ 192 (467)
....|..+..++..|++++|+..|+.+...+|.+.. +.+..|..+.+.|++.+|+..+++++..+|++.. .+.+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 346789999999999999999999999999999765 5778888899999999999999999999998543 34577
Q ss_pred HHHHHHHcC-----------ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265 193 RAQVAAAAN-----------HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 261 (467)
Q Consensus 193 Laql~~~~g-----------~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 261 (467)
+|..+..+. ...+|+..|+.++..-+ ...-..+|...+..+....-.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP-------------~S~y~~~A~~~l~~l~~~la~--------- 142 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP-------------NSEYAEEAKKRLAELRNRLAE--------- 142 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T-------------TSTTHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc-------------CchHHHHHHHHHHHHHHHHHH---------
Confidence 777765542 12344444444443211 112223333333322221100
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC----HHHHHHHHHHhccCChhHHH
Q 012265 262 VIMQEAASFKLRHGREEDASHLFEELVKTHGS----IEALVGLVTTSAHVDVDKAE 313 (467)
Q Consensus 262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd----~~ala~Lv~a~~~~d~~kA~ 313 (467)
--+.+|.+|++.|.+..|+..|+.+++.+|+ .+++..++.+|-.++...+.
T Consensus 143 -~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 -HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred -HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1122699999999999999999999999987 47889999999777754443
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=1.3e-06 Score=85.41 Aligned_cols=257 Identities=19% Similarity=0.165 Sum_probs=155.7
Q ss_pred HHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHH
Q 012265 38 AYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQR 117 (467)
Q Consensus 38 A~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~ 117 (467)
|-+-.--|++..|+.+..+.-+..+ .+.+.++.+.- +.++-++.+.+=+.+.++.+..++ +.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~--AA~qrgd~~~an~yL~eaae~~~~---------------~~ 152 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAE--AAQQRGDEDRANRYLAEAAELAGD---------------DT 152 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHH--HHHhcccHHHHHHHHHHHhccCCC---------------ch
Confidence 5566678999999998888665433 33333322111 223334444444455444332111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cHHHHHH-HHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD-KSKIILL-ARAQ 195 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-~~~~~~l-~Laq 195 (467)
.......+.+.+..|+++.|+..+..+....|.++.+..+...+|+..|.|.+...++.++-+..-- ++....| ..+.
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 2355677888899999999999999999999999999889899999999999988888776654311 1111111 0000
Q ss_pred --HHHHcCChHHHHH---HHhcccc-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Q 012265 196 --VAAAANHPFIAAE---SLAKIPD-IQHMPATVATLVALKERAGDIDGAAAVLDSAI---------------------- 247 (467)
Q Consensus 196 --l~~~~g~~~~A~~---~L~~~~~-~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al---------------------- 247 (467)
++-+.++-+.+.. +.+.+.. ...+|.+...++.-+.+.|++++|...+..++
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~ 312 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEP 312 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchH
Confidence 1111111111111 2222221 22345555555555555555555555555333
Q ss_pred -----HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhcc-CChhHHHHH
Q 012265 248 -----KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAH-VDVDKAESY 315 (467)
Q Consensus 248 -----~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~-~d~~kA~~l 315 (467)
++|-..-++++ .++..+|.++++++.+.+|...|+.+++..|+....+-+..++.. .++..|++.
T Consensus 313 l~k~~e~~l~~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 313 LIKAAEKWLKQHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHHHHHHHHhCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 23322233344 357778999999999999999999999988887777777777754 456777554
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.91 E-value=5.9e-08 Score=102.87 Aligned_cols=184 Identities=13% Similarity=0.140 Sum_probs=152.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
.+..|..++..|+++.|.+++.++++++|.+..++..+|.+|.+.|+..+|....--+...+|.+.+.+ ..++.+..++
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W-~~ladls~~~ 220 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW-KRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHhc
Confidence 455677777779999999999999999999999999999999999999999998888888999998765 8999999999
Q ss_pred CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHCCChh
Q 012265 201 NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED-NKLSVIMQEAASFKLRHGREE 278 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~ll~~la~~~l~~g~~~ 278 (467)
|++++|+-+|.+++...+ +..++.....+|.++|+...|...|.+++.+-+ +.+ ..+....+..+..+..+++.+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---PVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999998765 566777889999999999999999999987632 111 123334444677788888889
Q ss_pred HHHHHHHHHHHhc------CCHHHHHHHHHHhccCC
Q 012265 279 DASHLFEELVKTH------GSIEALVGLVTTSAHVD 308 (467)
Q Consensus 279 ~A~~~le~ll~~~------pd~~ala~Lv~a~~~~d 308 (467)
.|+..++..+... ||...++.|.+.+...|
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHH
Confidence 9999999999843 34577788777765555
No 90
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.91 E-value=3.3e-07 Score=89.55 Aligned_cols=190 Identities=21% Similarity=0.258 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
...+.|.+++-+..|+|.+|++.+.+..+..+.....+++-|....+.|+.+.|-.++.++.+.-+++.-.+.++.++++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44678899999999999999999998766555555556666666788999999999999999886666555668999999
Q ss_pred HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI----------------------------- 247 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al----------------------------- 247 (467)
+.+|++..|...+.++.+..+ +|.++.....+|.+.|++.+...++.+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998775 77888888999999999988888777322
Q ss_pred ------HHHHHhcc---CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhH
Q 012265 248 ------KWWLNAMT---EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDK 311 (467)
Q Consensus 248 ------~~~~~~~~---~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~k 311 (467)
.||++.+. .++. +...++.-+.+.|++++|.++.++.++..-|.. ++.++-+.-..|+++
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~ 312 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPE---LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRPGDPEP 312 (400)
T ss_pred cchHHHHHHHhccHHhhcChh---HHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCCCCchH
Confidence 46765332 1233 334457778999999999999999999875544 667776666666544
No 91
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=2.3e-07 Score=91.61 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCCh--hHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHAN-KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKA--GKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 119 ~l~~n~all~l~~~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~--~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
.++.+++.++...| .++++...+++++..+|++..++...+.++...+.. ++++..+.++++.+|.+..++ ...+.
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW-~~R~w 150 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW-SHRQW 150 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH-HHHHH
Confidence 45667777777777 589999999999999999999988888777777764 678999999999999998765 88899
Q ss_pred HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 012265 196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA---GDI----DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEA 267 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~---g~~----~~A~~~l~~al~~~~~~~~~~~~~~~ll~~l 267 (467)
++...|++++|+..+.++++.++ +..++...+.++... |.+ ++++.+..+++... +...++|..+
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-------P~N~SaW~Yl 223 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-------PRNESPWRYL 223 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-------CCCcCHHHHH
Confidence 99999999999999999998765 566777777776665 333 46677777777652 2222356666
Q ss_pred HHHHHH----CCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Q 012265 268 ASFKLR----HGREEDASHLFEELVKTHGS-IEALVGLVTTSAH 306 (467)
Q Consensus 268 a~~~l~----~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~ 306 (467)
+.++.. .+...+|...+.+++...|. ..++.-|+-.|+.
T Consensus 224 ~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 224 RGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 777766 35567899999998887754 5566666655543
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=1e-07 Score=88.48 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=137.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
++.+..+...|+-+........+...+|.+......++..++..|++.+|+..++++....|++...+ ..+|-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~-~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW-NLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh-hHHHHHHHHcc
Confidence 78888999999999999999998888998877766688888999999999999999999999998864 89999999999
Q ss_pred ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHH
Q 012265 202 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA 280 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A 280 (467)
++++|...|.+++++.. .|.++..++.+|.-.|+++.|..+|..+... ++.+. .+...++.+.-..|++.+|
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~---~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS----PAADS---RVRQNLALVVGLQGDFREA 221 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCch---HHHHHHHHHHhhcCChHHH
Confidence 99999999999999875 7888999999999999999999999988652 22222 2455678888889999999
Q ss_pred HHHHHHHHH
Q 012265 281 SHLFEELVK 289 (467)
Q Consensus 281 ~~~le~ll~ 289 (467)
.++-.+-+.
T Consensus 222 ~~i~~~e~~ 230 (257)
T COG5010 222 EDIAVQELL 230 (257)
T ss_pred Hhhcccccc
Confidence 988766554
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.86 E-value=1.2e-07 Score=82.93 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=94.4
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh----hHHHHHHHHHHHcCCH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQHMP----ATVATLVALKERAGDI 236 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p----~~~~~l~~ly~~~g~~ 236 (467)
...++...+...++.++..+|+.. ....|.+|.++..+|++++|+..|+.+++...++ -+...|+.++..+|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 358889999999999999999972 2345889999999999999999999999754433 3456789999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265 237 DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 237 ~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll 288 (467)
++|+..|+.... .......+...|.+++..|++++|...|++++
T Consensus 102 d~Al~~L~~~~~--------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQIPD--------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhccC--------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999976321 11122234447999999999999999999874
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.3e-07 Score=92.16 Aligned_cols=169 Identities=19% Similarity=0.192 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
+..-.|.+++..|++++|.+.+... ++.+...+.+.++++.++++.|.+.++.+-+.+.+.. ...++.|.+.+.
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~-l~qLa~awv~l~ 177 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI-LTQLAEAWVNLA 177 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHH
Confidence 4444566666777777776666543 4556666777777777777777777777665554433 334555555555
Q ss_pred cC--ChHHHHHHHhccccC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265 200 AN--HPFIAAESLAKIPDI-QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 276 (467)
Q Consensus 200 ~g--~~~~A~~~L~~~~~~-~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~ 276 (467)
.| ++.+|.-+|+.+.+. ..++.+...++.+++++|++++|...|.+++... +.....+..++.+....|+
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-------~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-------PNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHTT-
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHhCC
Confidence 55 477777777776653 2356666667777777777777777777776421 2223345556666666776
Q ss_pred h-hHHHHHHHHHHHhcCCHHHHHHHH
Q 012265 277 E-EDASHLFEELVKTHGSIEALVGLV 301 (467)
Q Consensus 277 ~-~~A~~~le~ll~~~pd~~ala~Lv 301 (467)
. +.+.+++.++...+|+...+..+.
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred ChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 6 445566666666666644444443
No 95
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=2.9e-07 Score=90.75 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
...+-.+.+....|++++|.+.|+++|..+.+-...++-++. ......+..+++.-+..+ +..|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl---t~e~~~~ldeald~f~kl----------h~il--- 554 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL---TAEALGNLDEALDCFLKL----------HAIL--- 554 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc---cHHHhcCHHHHHHHHHHH----------HHHH---
Confidence 445667888889999999999999999865443333331111 111223455555555432 1111
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
.....+.+..+.+|-...+..+|++++-++...-|.++..+--++.+|-++|+..+|.+++-.-..-+|-+.+.+ -
T Consensus 555 ---~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i-e 630 (840)
T KOG2003|consen 555 ---LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI-E 630 (840)
T ss_pred ---HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH-H
Confidence 123346677888888889999999999999999999998877889999999999999999888888899998876 8
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
+|+..|+...=+++|+..|+++.-++++.. +...+++++.+.|++..|..+|+..-..+
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 899999999999999999999976666443 34556889999999999999998876554
No 96
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.85 E-value=3.3e-07 Score=87.12 Aligned_cols=177 Identities=14% Similarity=0.080 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHH---HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPL---LLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLARA 194 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~---ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~La 194 (467)
..|..+..++..|++++|++.|+.+...+|++..+. +..|.++.+.+++++|+..++++++.+|+++. .+.+.+|
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 467889999999999999999999999999987654 67788899999999999999999999998643 3446666
Q ss_pred HHHHHcC---------------C---hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 012265 195 QVAAAAN---------------H---PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE 256 (467)
Q Consensus 195 ql~~~~g---------------~---~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~ 256 (467)
..+...+ + ..+|+..|+.+++.-++... ..+|...+..+......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~la~---- 176 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDRLAK---- 176 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHHHHH----
Confidence 5543332 1 23455555555542221111 12222222221111100
Q ss_pred CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC----HHHHHHHHHHhccCC-hhHHHHHHhcC
Q 012265 257 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS----IEALVGLVTTSAHVD-VDKAESYEKRL 319 (467)
Q Consensus 257 ~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd----~~ala~Lv~a~~~~d-~~kA~~l~~~L 319 (467)
--+.+|.+|++.|.+..|+.-|+.++...|+ .+++..++.+|...+ .+.|....+.|
T Consensus 177 ------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 ------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0123699999999999999999999999886 588999999996554 57776665443
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3.1e-07 Score=84.73 Aligned_cols=128 Identities=19% Similarity=0.146 Sum_probs=110.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
..-.++++-.+|.+++|.+.++.++..+|.+...+.-+.+++-.+|+..+|++.+..+++.++.|.+++ .-|+.+|+..
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW-~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAW-HELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhH
Confidence 345678888899999999999999999999988877777788889999999999999999999999876 7899999999
Q ss_pred CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Q 012265 201 NHPFIAAESLAKIPDIQH-MPATVATLVALKERAG---DIDGAAAVLDSAIKW 249 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g---~~~~A~~~l~~al~~ 249 (467)
|+|++|+-+|+.++=+.+ +|.++..++.++.-+| ++..|..+|.+++..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999986654 8888888887766555 557788888888875
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-06 Score=84.23 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=136.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 203 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~ 203 (467)
.+.|+-.-|.+++-..+...+....-.....++..+.+++..+++..|+.+-++.+..+|.+...+ +..|.+++..|+.
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~al-ilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEAL-ILKGRLLIALERH 350 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHH-HhccHHHHhccch
Confidence 477777888888888888887766656666788888899999999999999999999999998865 8889999999999
Q ss_pred HHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------HHHHHh
Q 012265 204 FIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI-----------------------------KWWLNA 253 (467)
Q Consensus 204 ~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al-----------------------------~~~~~~ 253 (467)
++|+-.|+.+..+.+ ....+.-|+..|+..|++.+|...-+.+. .++...
T Consensus 351 ~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999999988764 56677788899999999988887666433 233222
Q ss_pred ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 254 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 254 ~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
..-.|.+..+...+|.++..-|.+++++.++++.+..+||.
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 22234444455557888899999999999999999988874
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=3.3e-07 Score=100.15 Aligned_cols=193 Identities=13% Similarity=0.112 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH-------------
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS------------- 186 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~------------- 186 (467)
++.....++...|++++|...++..++.+|+....+++.|.++.+.+++.+|.-+ .++...+.+.
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence 3444566777899999999999999999999999999999999888888877544 5555554443
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------
Q 012265 187 ------KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW--------- 250 (467)
Q Consensus 187 ------~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~--------- 250 (467)
.+ ++.||.+|-+.|++++|...++++++.++ ++.++..++..|... +.++|+.++.+|+..+
T Consensus 111 ~~~~~k~A-l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 111 LYGENKLA-LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred hhhhhhHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHH
Confidence 54 48999999999999999999999999886 888999999999999 9999999999888543
Q ss_pred ----HHh---ccCCchH-----HHHHHHHH------------HHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265 251 ----LNA---MTEDNKL-----SVIMQEAA------------SFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA 305 (467)
Q Consensus 251 ----~~~---~~~~~~~-----~~ll~~la------------~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~ 305 (467)
..- .+.+-.. ..+....+ ..|-..+++++++.+|+.+++.+|. .-+...++.||.
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 221 1111111 01111122 5566678999999999999999964 677888988883
Q ss_pred --cCChhHHHHHH
Q 012265 306 --HVDVDKAESYE 316 (467)
Q Consensus 306 --~~d~~kA~~l~ 316 (467)
+.+.+..+.++
T Consensus 269 ~kY~~~~~~ee~l 281 (906)
T PRK14720 269 EKYKDHSLLEDYL 281 (906)
T ss_pred HHccCcchHHHHH
Confidence 33434444443
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.4e-06 Score=86.35 Aligned_cols=246 Identities=12% Similarity=0.001 Sum_probs=170.4
Q ss_pred HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCC----CChhHHHHhhhhhhhhhhhHH
Q 012265 27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGP----KDVNDSLKKLDRIKEKDMQNF 102 (467)
Q Consensus 27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~----~~~~~a~~~l~~~~~~~~~~~ 102 (467)
..+.+.-...+|.......+++.|++.|..++.++ .+...+.....-++-+... ...+++...-....
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r------- 291 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR------- 291 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-------
Confidence 34455667788999999999999999999999998 6666555332222222111 01122222111110
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265 103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL 182 (467)
Q Consensus 103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~ 182 (467)
.+.++ ........+-.+...+.++.|+..+.+.+..+-. ..++-+.+..+++++......-.+
T Consensus 292 -----ad~kl----Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~ 354 (539)
T KOG0548|consen 292 -----ADYKL----IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYIN 354 (539)
T ss_pred -----HHHHH----HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 00011 0011111344666678899999999986654432 234455667778888888877788
Q ss_pred CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265 183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 261 (467)
Q Consensus 183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 261 (467)
|+-.... -.-|.-++..|+|..|+..|.+++..++ ++.+++..+.+|...|.+..|+.-.+.+++.. +.+.
T Consensus 355 pe~A~e~-r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-------p~~~ 426 (539)
T KOG0548|consen 355 PEKAEEE-REKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-------PNFI 426 (539)
T ss_pred hhHHHHH-HHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------chHH
Confidence 8765544 4558999999999999999999987766 66788999999999999999999999988752 3333
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265 262 VIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA 305 (467)
Q Consensus 262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~ 305 (467)
..+..-|.++..+.+|+.|.+.|+++++.+|+ .+++-++..|+.
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34444588898999999999999999999986 566667777765
No 101
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.75 E-value=3.9e-06 Score=79.81 Aligned_cols=184 Identities=9% Similarity=0.027 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
.+..|.-+...|++++|+..|+.++...|......
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~--------------------------------------------- 69 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ--------------------------------------------- 69 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH---------------------------------------------
Confidence 56789999999999999999999998877432110
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH---HHHHHHHHHhcC------------------ChhHHH
Q 012265 114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP---LLLQAAVLVREN------------------KAGKAE 172 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~---~ll~a~l~~~~~------------------~~~~A~ 172 (467)
.+.++.+.+++..+++++|+..++++++.+|+++.+ .++.|..+...+ ...+|+
T Consensus 70 -----~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 70 -----QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 134567888999999999999999999999998653 455554432221 134788
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 173 ELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 173 ~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
..|+.+++.+|++.-. ..|+-.+..=+..-| .--..++..|.+.|.+..|+.-++.++..|++
T Consensus 145 ~~~~~li~~yP~S~ya---~~A~~rl~~l~~~la--------------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 145 RDFSKLVRGYPNSQYT---TDATKRLVFLKDRLA--------------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred HHHHHHHHHCcCChhH---HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence 9999999999987431 222222110000000 11225688899999999999999999998754
Q ss_pred hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265 253 AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 253 ~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll 288 (467)
.+....++..++..+...|..++|..+...+.
T Consensus 208 ----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 208 ----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34445566668999999999999988776543
No 102
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=7.8e-07 Score=91.53 Aligned_cols=243 Identities=16% Similarity=0.090 Sum_probs=174.4
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 114 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~ 114 (467)
+-.+.-..-.+.|...+...+.||+..|.+..++++-+.++.++++ ..+++..+......+ +
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~---~~ea~~~vr~glr~d---------~------ 72 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK---KEEAYELVRLGLRND---------L------ 72 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc---hHHHHHHHHHHhccC---------c------
Confidence 3344455678899999999999999999999999988777777654 445555554321111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
-..+.+--.++++-...+|++|++++..++...|+|..++.=.+.+.++.++++-....=.+++...|..-..+ +.+|
T Consensus 73 -~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w-~~~A 150 (700)
T KOG1156|consen 73 -KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASW-IGFA 150 (700)
T ss_pred -ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHH-HHHH
Confidence 11234445677777788899999999999999999999887777778889999988888788899999876554 7888
Q ss_pred HHHHHcCChHHHHHHHhccccCC---CChhH------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQ---HMPAT------VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~---~~p~~------~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
..+...|++..|..+++...... .++.. ...-..++...|..+.|.+.+..--... -+.+. ...
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i------~Dkla-~~e 223 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI------VDKLA-FEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH------HHHHH-Hhh
Confidence 88888999999999999886432 22222 2233456666777777766665422111 12222 233
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHh
Q 012265 266 EAASFKLRHGREEDASHLFEELVKTHGSI-EALVGLVTTS 304 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~~pd~-~ala~Lv~a~ 304 (467)
.-|.+++..|++++|..+|..++..+||. +..-++..++
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 35899999999999999999999999984 3444454454
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.9e-06 Score=86.34 Aligned_cols=149 Identities=18% Similarity=0.096 Sum_probs=125.0
Q ss_pred CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHH
Q 012265 149 PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLV 227 (467)
Q Consensus 149 P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~ 227 (467)
|....+.+-.|..++..|++++|+..|..++..+|+|+-+. .+.++|++..|+..+|++.+++++...+ .+-++..++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~-~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYL-ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 66667777788888999999999999999999999998654 7889999999999999999999998876 477788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA 305 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~ 305 (467)
..|++.|++.+|+.+|+..+.. .|+++. .|..+|..|-.+|+..+|...+-+.+....+ ..++..+..+..
T Consensus 382 ~all~~g~~~eai~~L~~~~~~----~p~dp~---~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN----DPEDPN---GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc----CCCCch---HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999999987753 233333 4667899999999999999999999988866 345555555543
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=1e-05 Score=91.71 Aligned_cols=172 Identities=15% Similarity=0.019 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH-HHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS-FAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~-~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
+...+++++..+|++++|...++.++...+.+... ..++.+++.. ....++...+...+.+..... ....
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~-------~~~g- 525 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA-------RQHD- 525 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------hhhc-
Confidence 34558999999999999999999998854533221 2222222211 111234445554444332110 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-----CCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF-----PDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKL 182 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-----P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~ 182 (467)
..........+.+.+++..|++++|...+++.+... +... ......+.++...|++++|...+.+++...
T Consensus 526 --~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 526 --VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred --chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 001112345677888888888888888877655431 1111 123355667777788888888888876642
Q ss_pred C----CcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 183 P----DKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 183 P----~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
. .........++.++...|++++|...+..+.
T Consensus 604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1122233457888888888888888877764
No 105
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=2.4e-07 Score=80.53 Aligned_cols=106 Identities=13% Similarity=0.008 Sum_probs=85.8
Q ss_pred ccccC-CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh
Q 012265 144 LPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA 221 (467)
Q Consensus 144 l~~~~-P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~ 221 (467)
+.... ++......-.|..+...|++++|+++++-+...+|.+...+ +.||-++-..|+|.+|+..|..+..+++ +|.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~-~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYW-FRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 34445 55556666677777888899999888888888888888765 8888888888999999999988887765 777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
....++.+|+..|+.+.|+..|+.++.|-
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78888888889999999999998888764
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.66 E-value=2.7e-07 Score=92.90 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
+..+..++..|+++.|+..+.+++..+|++..+++..|.++...|++++|+..+++++..+|++... ++.+|.+|...|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a-~~~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA-YLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHhC
Confidence 3456777778888888888888888888888887788888888888888888888888888887664 477888888888
Q ss_pred ChHHHHHHHhccccCCC-ChhHHHHH
Q 012265 202 HPFIAAESLAKIPDIQH-MPATVATL 226 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~~-~p~~~~~l 226 (467)
+|++|+..|++++.+.+ ++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 88888888888877654 45444333
No 107
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.65 E-value=3.1e-07 Score=76.50 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARA 194 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~La 194 (467)
++++.+..++..|++++|...++.++..+|++. .+.+..+.++...|++++|+..|+.++..+|++. ..+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345666666666666666666666666666542 3455566666666666666666666666665531 11235566
Q ss_pred HHHHHcCChHHHHHHHhccccC
Q 012265 195 QVAAAANHPFIAAESLAKIPDI 216 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~ 216 (467)
.++...|++++|+..|+++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666544
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.8e-06 Score=84.26 Aligned_cols=251 Identities=12% Similarity=0.050 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
....+...+..|+++.|+..|.+++.++|.+..++.--++.+..++ .+.++++...+.+ +|.
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~---~~~~al~da~k~~---------------~l~ 66 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLG---SYEKALKDATKTR---------------RLN 66 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHh---hHHHHHHHHHHHH---------------hcC
Confidence 3567888999999999999999999999987665542222332332 2333333322211 111
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH------------------------------------
Q 012265 114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL------------------------------------ 157 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll------------------------------------ 157 (467)
++|.-.+...+..++..|+|++|+..|.+-++.+|++..+.--
T Consensus 67 -p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~ 145 (539)
T KOG0548|consen 67 -PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSD 145 (539)
T ss_pred -CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhcc
Confidence 3566677777778888888888887777666555554322110
Q ss_pred --------------------------------------------------------------------------------
Q 012265 158 -------------------------------------------------------------------------------- 157 (467)
Q Consensus 158 -------------------------------------------------------------------------------- 157 (467)
T Consensus 146 ~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 146 PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhh
Confidence
Q ss_pred ----HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----Ch----hHHHH
Q 012265 158 ----QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH----MP----ATVAT 225 (467)
Q Consensus 158 ----~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p----~~~~~ 225 (467)
.+....+..++..|++.+..+++.+ .+.... ...+.+|+..|.+.+++......++... .. .....
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~-~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYL-NNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHH-HHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1123345566667777777777777 655543 6778888888888888777777664321 11 11234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------------ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHH
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLNA-------------------MTEDNKLSVIMQEAASFKLRHGREEDASHLFEE 286 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~~-------------------~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ 286 (467)
++..|..+++++.|+.+|.+++..+... .--++....-.+..|..++..|+|..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 5668888899999999999888654320 000122333455568899999999999999999
Q ss_pred HHHhcCC-HHHHHHHHHHhc
Q 012265 287 LVKTHGS-IEALVGLVTTSA 305 (467)
Q Consensus 287 ll~~~pd-~~ala~Lv~a~~ 305 (467)
++..+|+ .....+..+||.
T Consensus 384 AIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HHhcCCchhHHHHHHHHHHH
Confidence 9999986 455556666663
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=1.9e-06 Score=94.28 Aligned_cols=218 Identities=11% Similarity=-0.031 Sum_probs=140.7
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
.-..++.+|...|..+|++++|.++++..+...|+...+++..+.-+.......++... .+........ +....+.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-KWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-chhHHHHH
Confidence 34467899999999999999999999999999999999888765522222222233222 2221111111 01112211
Q ss_pred hcCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---
Q 012265 109 DLRL-SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--- 184 (467)
Q Consensus 109 ~~kL-~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--- 184 (467)
...+ ..+...-+++.+|.+|-.+|+.++|...++++++.+|++..+.-..|..|... +.++|+.++.+++..+=+
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq 184 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQ 184 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhc
Confidence 1111 11222347788899999999999999999999999999999888888888777 999999999887765311
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHhccccC-CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 185 KSKIILLARAQVAAAANHPFIAAESLAKIPDI-QH--MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-~~--~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
......+..--+....-+++.-..+++++... .+ .-+++.-+...|...+++++++.+|+.++.+.
T Consensus 185 ~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 11111122222233334444444444444421 11 23445567788889999999999999998763
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.61 E-value=1.5e-06 Score=84.71 Aligned_cols=126 Identities=23% Similarity=0.218 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC--ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN--KAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~--~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
.-...++|..|++|.|.+.++.+...+.++....+..|-+.+..| ++.+|.-+|+++...+|.++.. ...+|-+++.
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~-lng~A~~~l~ 213 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL-LNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHH
Confidence 345678899999999999999999888877777777776665555 6899999999999988887654 4788999999
Q ss_pred cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 012265 200 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI-DGAAAVLDSAIK 248 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~-~~A~~~l~~al~ 248 (467)
+|+|++|...|+++++.++ +|.++..++.+...+|+. +.+..++.++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999987665 788888899999999988 556666666544
No 111
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=5.5e-07 Score=85.19 Aligned_cols=104 Identities=14% Similarity=0.001 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
-+.+-=++..++|.+|...+.+++..+|.+..++-..|++|.+.|.++.|++-|+.++..+|.....+ ..|+.+|+.+|
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay-~RLG~A~~~~g 163 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY-GRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH-HHHHHHHHccC
Confidence 45677778889999999999999999999988888899999999999999999999999999888764 88999999999
Q ss_pred ChHHHHHHHhccccCCC-ChhHHHHH
Q 012265 202 HPFIAAESLAKIPDIQH-MPATVATL 226 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~~-~p~~~~~l 226 (467)
++.+|+..|++++++++ ++.+...|
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999999999887 44333333
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=1.4e-05 Score=84.01 Aligned_cols=130 Identities=14% Similarity=0.093 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 233 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~ 233 (467)
+++.+.++...+..++|..++.++-..+|..... ++..|+++..+|+..+|.+.|..++.+++ ++.....++.+|++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~-~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASV-YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH-HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4456666677788888888888888888877654 47778888888888888888888887765 555666788888888
Q ss_pred CCHHHHHH--HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 234 GDIDGAAA--VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 234 g~~~~A~~--~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
|+..-|.. ++..++... +....+|..+|.++...|+.++|.+.|..+++..+
T Consensus 732 G~~~la~~~~~L~dalr~d-------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 87776666 888888652 23335688888888888888888888888888764
No 113
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.59 E-value=3.3e-07 Score=89.33 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=132.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCC--CC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCcHHHHHHHH
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFP--DS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----PDKSKIILLAR 193 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P--~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~~~l~L 193 (467)
-+..+-..+++++|.+.+.++...+- ++ ..-.+..+..+++..++++|+..|++++..+ |.....++..+
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 35556667778888888886643321 11 1124455666667779999999999988753 22222345788
Q ss_pred HHHHHHc-CChHHHHHHHhccccC----CC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 194 AQVAAAA-NHPFIAAESLAKIPDI----QH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 194 aql~~~~-g~~~~A~~~L~~~~~~----~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
|.+|... |++++|+..|+++.++ +. ...++..++.++.+.|++++|+..|++......+..-........++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 9999998 9999999999999853 11 12345678999999999999999999987643211111123445566
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHhcCC------HHHHHHHHHHhccCChhHHHHHHh
Q 012265 266 EAASFKLRHGREEDASHLFEELVKTHGS------IEALVGLVTTSAHVDVDKAESYEK 317 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~~pd------~~ala~Lv~a~~~~d~~kA~~l~~ 317 (467)
..+.+++..||+..|...|++....+|. ...+..|+.|+...|.+.-...+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6788899999999999999999988763 366888999998888765544433
No 114
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.58 E-value=1.8e-07 Score=69.59 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
..+.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|+++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 567778888888888888888888888888888888888888888888888888888888775
No 115
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=4.4e-07 Score=70.65 Aligned_cols=94 Identities=20% Similarity=0.062 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
+++.+.+++..|++++|...++.++...|.+..++...+.++...+++++|+..++.++...|.+... .+.++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA-YYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH-HHHHHHHHHHH
Confidence 45666677777777777777777777777666666666666667777777777777777776666543 36667777777
Q ss_pred CChHHHHHHHhcccc
Q 012265 201 NHPFIAAESLAKIPD 215 (467)
Q Consensus 201 g~~~~A~~~L~~~~~ 215 (467)
|++++|...+..++.
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777777776666554
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.57 E-value=7.1e-07 Score=74.24 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHH
Q 012265 153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATL 226 (467)
Q Consensus 153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l 226 (467)
..++..|..+...|++++|+..|.+++..+|++. ..+++.+|.++...|++++|+..|+.++...+ .+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456778888999999999999999999999763 22458899999999999999999999986433 35678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
+.+|..+|++++|+.++++++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999999875
No 117
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.55 E-value=1.2e-05 Score=84.19 Aligned_cols=236 Identities=20% Similarity=0.220 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
.+-++.|+...|++++|++.++.....-.+...+.-.-+.-++.+++..++...++.+. ..+|.+.....+|+.-+
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li---~rNPdn~~Yy~~L~~~~- 82 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI---DRNPDNYDYYRGLEEAL- 82 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCcHHHHHHHHHHH-
Confidence 34568889999999999999998777666555555544455555655555555555543 33332222112211000
Q ss_pred HHHHHHHHHHHHHH-HHHcCCHHHHHHHHHhccccCCCCchHH-------------------------------HHH-HH
Q 012265 114 PKQREAIYANRVLL-LLHANKMDQARELVAALPDMFPDSVMPL-------------------------------LLQ-AA 160 (467)
Q Consensus 114 ~~q~~~l~~n~all-~l~~~~~~~A~~~~~~l~~~~P~~~~~~-------------------------------ll~-a~ 160 (467)
++- .+.....+....+++.+...+|.+..+. +.. -.
T Consensus 83 -----------g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~ 151 (517)
T PF12569_consen 83 -----------GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKP 151 (517)
T ss_pred -----------hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 000 0111234444455555555555432221 111 11
Q ss_pred HHHhcCChhHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265 161 VLVRENKAGKAEELLGQFAEK----------------LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV 223 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~----------------~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~ 223 (467)
+|....+..-...++..+... .|.....+++.|||.|-..|++++|+..++++++..+ .+.++
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 222222222223444444322 1222112457889999999999999999999998766 68889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
...+.+|.+.|++.+|...++.|..... . +.+ +-..++..+++.|+.++|..++..-...+
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~----~-DRy--iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDL----A-DRY--INSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCh----h-hHH--HHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 9999999999999999999999987531 1 222 23346888999999999999887765544
No 118
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=4.2e-07 Score=85.97 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=45.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265 158 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI 236 (467)
Q Consensus 158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~ 236 (467)
.+.-+.+.++|.+|+..|.++|+..|.+..+. -..|++|.+.|.|+.|++-.+.++.+++ ....|..|+.+|..+|++
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyy-cNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYY-CNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 33444455555555555555555555554332 3445555555555555555555554443 233344444445455555
Q ss_pred HHHHHHHHHHHHH
Q 012265 237 DGAAAVLDSAIKW 249 (467)
Q Consensus 237 ~~A~~~l~~al~~ 249 (467)
++|+..|+++++.
T Consensus 166 ~~A~~aykKaLel 178 (304)
T KOG0553|consen 166 EEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHhhhcc
Confidence 5555444444443
No 119
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.55 E-value=1.6e-06 Score=87.44 Aligned_cols=118 Identities=23% Similarity=0.222 Sum_probs=102.2
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 204 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~ 204 (467)
..+....++++.|+..++++.+.+|+ ...+.|.++...++..+|++++.+.+..+|.+...+ ...|+.++..++++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL-~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELL-NLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhcCCHH
Confidence 33444578899999999999999986 456678888888899999999999999999997754 67899999999999
Q ss_pred HHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265 205 IAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSA 246 (467)
Q Consensus 205 ~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~a 246 (467)
.|+.+.+++.+..+ ....|..|+.+|...|+++.|+..++.+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999998766 5578999999999999999999888854
No 120
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.54 E-value=3.1e-07 Score=72.17 Aligned_cols=81 Identities=20% Similarity=0.121 Sum_probs=56.0
Q ss_pred cCChhHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 012265 165 ENKAGKAEELLGQFAEKLPDK-SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~P~~-~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
+|++++|+.+++++++..|.+ .....+.+|.+|.+.|++++|+.++++ ...+. ++.....++.++.++|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 577888888888888887743 222336678888888888888888877 43332 345555668888888888888888
Q ss_pred HHHH
Q 012265 243 LDSA 246 (467)
Q Consensus 243 l~~a 246 (467)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 121
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.5e-06 Score=81.34 Aligned_cols=186 Identities=16% Similarity=0.082 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
-...+..+.++...|++++|..+--.+++.++.+...++|- +++ +--..+...+.+.+.+....+|.+..+-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr--g~~-~yy~~~~~ka~~hf~qal~ldpdh~~sk----- 240 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR--GLC-LYYNDNADKAINHFQQALRLDPDHQKSK----- 240 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc--ccc-cccccchHHHHHHHhhhhccChhhhhHH-----
Confidence 34566678999999999999999999999999888877753 332 1112344555555555444443332211
Q ss_pred CCCHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH----HHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265 111 RLSPKQRE--AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP----LLLQAAVLVRENKAGKAEELLGQFAEKLPD 184 (467)
Q Consensus 111 kL~~~q~~--~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~----~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~ 184 (467)
-...+.. ....+.+.-.+..|++..|.+.+...+..+|++... +.-.|.+.++.|+..+|+.-+..+++.+|.
T Consensus 241 -~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 241 -SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred -hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 1111111 235567888899999999999999999999998653 345677888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHH
Q 012265 185 KSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATL 226 (467)
Q Consensus 185 ~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l 226 (467)
....+ +..|+.|+..++|++|++-|+++.+...++.+..++
T Consensus 320 yikal-l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 320 YIKAL-LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88765 888999999999999999999998766555444443
No 122
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.52 E-value=2.7e-06 Score=76.20 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=73.1
Q ss_pred HHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHh
Q 012265 136 QARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLA 211 (467)
Q Consensus 136 ~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~ 211 (467)
++...+..+.+.++... ..++..+.++...|++++|+..|.+++...|+.. ..+++.+|.+|...|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444433444432 2345566666677778888888777777665432 1234677778888888888888888
Q ss_pred ccccCCC-ChhHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHh
Q 012265 212 KIPDIQH-MPATVATLVALKE-------RAGDIDGAAAVLDSAIKWWLNA 253 (467)
Q Consensus 212 ~~~~~~~-~p~~~~~l~~ly~-------~~g~~~~A~~~l~~al~~~~~~ 253 (467)
+++.+.+ ....+..++.+|. ..|+++.|...+.+++.+|...
T Consensus 97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 7776543 3344555555555 6677777777777776666543
No 123
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.9e-06 Score=82.07 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC---CHHHHHHHH
Q 012265 168 AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG---DIDGAAAVL 243 (467)
Q Consensus 168 ~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g---~~~~A~~~l 243 (467)
.++-+.-++.-+..+|+|...+ ..||++|+.+|+++.|...|.++..+.+ +|.++..++.++..+. ...++..+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW-~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGW-DLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 4455567788899999999886 8999999999999999999999998875 8898888877665543 457889999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
++++... ..+...+++ +|..+++.|+|.+|+..++.++...|..
T Consensus 217 ~~al~~D------~~~iral~l-LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALD------PANIRALSL-LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcC------CccHHHHHH-HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999752 233444343 7999999999999999999999988653
No 124
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.50 E-value=1.1e-05 Score=74.58 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
...+.|..+...|++++|+..|+.++...|...-+-
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~-------------------------------------------- 42 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP-------------------------------------------- 42 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH--------------------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH--------------------------------------------
Confidence 358899999999999999999999998877432111
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhc-----------CChhHHHHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRE-----------NKAGKAEELLGQF 178 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~-----------~~~~~A~~~l~~~ 178 (467)
.+.+..+..++..|+++.|+..++.++..+|++.. +.++.|..+... +...+|+..++.+
T Consensus 43 ------~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 43 ------QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp ------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 13456677888999999999999999999999865 455666655432 2335899999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc
Q 012265 179 AEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN 258 (467)
Q Consensus 179 l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~ 258 (467)
+..+|++.-. ..|.-.+. .+...+ ..--..++.+|.+.|.+..|+.-++.++..|++ ..
T Consensus 117 i~~yP~S~y~---~~A~~~l~---------~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~----t~ 175 (203)
T PF13525_consen 117 IKRYPNSEYA---EEAKKRLA---------ELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPD----TP 175 (203)
T ss_dssp HHH-TTSTTH---HHHHHHHH---------HHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT----SH
T ss_pred HHHCcCchHH---HHHHHHHH---------HHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----Cc
Confidence 9999997432 11211111 011100 011234688899999999999999999988754 34
Q ss_pred hHHHHHHHHHHHHHHCCChhHHH
Q 012265 259 KLSVIMQEAASFKLRHGREEDAS 281 (467)
Q Consensus 259 ~~~~ll~~la~~~l~~g~~~~A~ 281 (467)
.....+..++..+...|..+.|.
T Consensus 176 ~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 176 AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHH
Confidence 44456666889999999988543
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.50 E-value=1.2e-06 Score=76.27 Aligned_cols=97 Identities=16% Similarity=0.066 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
...|-.+-.++..|++++|.+.|+-+...+|.+...++-+|.++-..|++.+|+..|..++...|+++... +.+|+.|+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~-~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP-WAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH-HHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999998764 89999999
Q ss_pred HcCChHHHHHHHhccccC
Q 012265 199 AANHPFIAAESLAKIPDI 216 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~ 216 (467)
..|+.+.|...|+.++..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999998753
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.49 E-value=2.2e-06 Score=86.36 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG 234 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g 234 (467)
+..|..++..|++.+|+.+|.+++..+|++... ++.+|.+|+..|++++|+..+++++.+.+ ++..+..++.+|..+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a-~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAEL-YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 456777889999999999999999999999875 58999999999999999999999998876 6778889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 012265 235 DIDGAAAVLDSAIKW 249 (467)
Q Consensus 235 ~~~~A~~~l~~al~~ 249 (467)
++++|+..|++++..
T Consensus 85 ~~~eA~~~~~~al~l 99 (356)
T PLN03088 85 EYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999976
No 127
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.48 E-value=8.3e-07 Score=66.47 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=50.1
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC-hhHHHHHH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM-PATVATLV 227 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p~~~~~l~ 227 (467)
+..|++++|+.+|++++..+|++... ++.+|.+|+.+|++++|..+|++++...++ +.+...++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEA-RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHH-HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 56788899999999999999988775 488899999999999999999988876553 55554444
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=3.3e-05 Score=72.01 Aligned_cols=168 Identities=21% Similarity=0.223 Sum_probs=114.3
Q ss_pred HHHHhccccCCCCchH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC
Q 012265 139 ELVAALPDMFPDSVMP-LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 139 ~~~~~l~~~~P~~~~~-~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~ 217 (467)
+..+.+....-++... .++-|.+++..+++++|++.+... ++.+.. ..-++++++..+++-|...++++.+++
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~-Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAA-ALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3344444444445433 445666788999999999988763 233333 566899999999999999999998765
Q ss_pred CChhHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-C
Q 012265 218 HMPATVATLVALK----ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-G 292 (467)
Q Consensus 218 ~~p~~~~~l~~ly----~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-p 292 (467)
.. .++..|+..+ ...+.+.+|.-+|++..+.++ +.. .++...+.+++.+|++++|..+++.++..+ .
T Consensus 168 ed-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~------~T~-~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 168 ED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP------PTP-LLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred hH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC------CCh-HHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 42 2333344333 334567788888888766431 222 245556888899999999999999999887 4
Q ss_pred CHHHHHHHHHHhcc--CChhHHHHHHhcCC
Q 012265 293 SIEALVGLVTTSAH--VDVDKAESYEKRLK 320 (467)
Q Consensus 293 d~~ala~Lv~a~~~--~d~~kA~~l~~~L~ 320 (467)
+++++++++.+.-+ .|.+-.+.++.+|.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 68999998887644 34445566666654
No 129
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.44 E-value=2.6e-07 Score=72.63 Aligned_cols=81 Identities=20% Similarity=0.137 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHhccccCCCC--chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHH
Q 012265 131 ANKMDQARELVAALPDMFPDS--VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAE 208 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~--~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~ 208 (467)
+|+++.|+..+++++...|.+ ...++..|.++.+.|++++|+.++++ +...|.+... ++.+|+.++..|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~-~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDI-HYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHH-HHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHH-HHHHHHHHHHhCCHHHHHH
Confidence 578999999999999999954 34556689999999999999999998 7777776554 4778999999999999999
Q ss_pred HHhcc
Q 012265 209 SLAKI 213 (467)
Q Consensus 209 ~L~~~ 213 (467)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 130
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.41 E-value=2.4e-06 Score=81.96 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=81.7
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCC----CChhHHHHH
Q 012265 154 PLLLQAAVL-VRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQ----HMPATVATL 226 (467)
Q Consensus 154 ~~ll~a~l~-~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~~p~~~~~l 226 (467)
..+..|.-+ ...|+|++|+..|+.++..+|++. ..+++.+|++|...|++++|+..|++++... ..+..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344444434 567999999999999999999973 2356999999999999999999999998532 257778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
+.+|..+|++++|+..|++++..|+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999998764
No 131
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.39 E-value=6.8e-05 Score=70.10 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLAR 193 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~L 193 (467)
..+|+.++-.|..|++++|.+.|+.+...+|.++. +.+.++..+.+.+++++|+..+.+++..+|.+.. .+.++.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 46789999999999999999999999999998754 5778888899999999999999999999998644 344444
Q ss_pred HHHHHHc-----CCh---HHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHhccCCchHHH
Q 012265 194 AQVAAAA-----NHP---FIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA---VLDSAIKWWLNAMTEDNKLSV 262 (467)
Q Consensus 194 aql~~~~-----g~~---~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~---~l~~al~~~~~~~~~~~~~~~ 262 (467)
+..+..+ .+. .+|+..|+.++.--++.. -...|.. .+...+..
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~d~LA~------------- 168 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLNDALAG------------- 168 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHHHHHHH-------------
Confidence 5443211 111 122222222221000000 0011111 12222211
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC----HHHHHHHHHHhccCCh-hHHH
Q 012265 263 IMQEAASFKLRHGREEDASHLFEELVKTHGS----IEALVGLVTTSAHVDV-DKAE 313 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd----~~ala~Lv~a~~~~d~-~kA~ 313 (467)
.=+.+|.+|++.|.+..|+.-++.+++..|+ .+++..+..+|-.+.+ +.|.
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 1123799999999999999999999998876 5889999999877664 4443
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=5.3e-05 Score=79.37 Aligned_cols=194 Identities=10% Similarity=0.052 Sum_probs=149.8
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
-.-.|-+..++|...|+..+|..+..+.++ +|+|+..+.+.+- + +.++.=+..+.....
T Consensus 423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD-v--~~d~s~yEkawElsn----------------- 481 (777)
T KOG1128|consen 423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD-V--LHDPSLYEKAWELSN----------------- 481 (777)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh-h--ccChHHHHHHHHHhh-----------------
Confidence 335578889999999999999999999999 5667766654321 1 111110111111110
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~ 189 (467)
+-..-+.+..+.+.+..++|++|.+.++..++.+|.....++..+.+..+.++++.|.+.|..++...|++...+
T Consensus 482 -----~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaW 556 (777)
T KOG1128|consen 482 -----YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAW 556 (777)
T ss_pred -----hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhh
Confidence 001123445566666678999999999999999999999999999999999999999999999999999998875
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
..++-.|+..|+-.+|...|..++..++ ++.+|-....+....|.+++|+..+.+.+..-
T Consensus 557 -nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 557 -NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred -hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8999999999999999999999987665 67777777777888999999999999887653
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.37 E-value=1.1e-05 Score=72.64 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHH
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE 231 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~ 231 (467)
++..|..+...|++++|+..+++++...|+.. ..+++.+|.+|...|++++|+..|++++...+ .+..+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33444444445555555555555554433311 11234555555555555555555555554432 3333444455555
Q ss_pred HcCCHHHH
Q 012265 232 RAGDIDGA 239 (467)
Q Consensus 232 ~~g~~~~A 239 (467)
..|+...+
T Consensus 118 ~~g~~~~a 125 (172)
T PRK02603 118 KRGEKAEE 125 (172)
T ss_pred HcCChHhH
Confidence 55544433
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.37 E-value=3.8e-06 Score=65.16 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 233 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~ 233 (467)
++..|..+...|++++|+..+++++...|.+... ++.++.++...|++++|+..|+.++...+ .+.++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADA-YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4567778888999999999999999999988654 58899999999999999999999987654 556778889999999
Q ss_pred CCHHHHHHHHHHHHH
Q 012265 234 GDIDGAAAVLDSAIK 248 (467)
Q Consensus 234 g~~~~A~~~l~~al~ 248 (467)
|+++.|...+..++.
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999999988765
No 135
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.7e-05 Score=76.52 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
...+.+|+++...|++++|+..|+.+...+..+..+.+-++.-..-++. +.++.......+.. |-...+.-.|.+|
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~eA~~~~~ka~k~-pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YIEAKSIAEKAPKT-PLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HHHHHHHHhhCCCC-hHHHHHHHHHHHH
Confidence 3456689999999999999999999998654444333211111111111 11111111111000 0000000011112
Q ss_pred CCHH----------H-HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012265 112 LSPK----------Q-REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE 180 (467)
Q Consensus 112 L~~~----------q-~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~ 180 (467)
|... | ...-++..+.+++-.-.+.+|++.+.+++..+|+....-+..|..+.+..=++-+..++.-++.
T Consensus 134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 2110 0 0011233455555556689999999999999998888778888888999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHc
Q 012265 181 KLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 181 ~~P~~~~~~~l~Laql~~~~ 200 (467)
++|++.-+. .+++-.+.+.
T Consensus 214 q~pdStiA~-NLkacn~fRl 232 (557)
T KOG3785|consen 214 QFPDSTIAK-NLKACNLFRL 232 (557)
T ss_pred hCCCcHHHH-HHHHHHHhhh
Confidence 999987654 4445444443
No 136
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.35 E-value=1.4e-05 Score=82.43 Aligned_cols=166 Identities=15% Similarity=0.082 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
...+|..++=.+..+||....+.++.+++.+|++.+.+-+++..+...|+.++|...+...+..++.+.. ++-.+|-++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v-CwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV-CWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch-hHHHHHHHH
Confidence 3457778888889999999999999999999999999999999999999999999999999998888754 457789999
Q ss_pred HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 276 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~ 276 (467)
....+|++|+.+|..++.+.+ +..++.-|+.+..++++++.....=...++.. +.....|..++..+.-.|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 77888899999999999987766655555432 3334457767777888999
Q ss_pred hhHHHHHHHHHHHhc
Q 012265 277 EEDASHLFEELVKTH 291 (467)
Q Consensus 277 ~~~A~~~le~ll~~~ 291 (467)
+..|..+++...+..
T Consensus 159 y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999888887765
No 137
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.34 E-value=8.7e-07 Score=66.35 Aligned_cols=68 Identities=29% Similarity=0.363 Sum_probs=60.4
Q ss_pred HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265 128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 196 (467)
Q Consensus 128 ~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql 196 (467)
++..|++++|++.++.++..+|++..+.+..|.+++..|++++|..+|.+++..+|+++.. +..+++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY-QQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH-HHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH-HHHHhcC
Confidence 4678999999999999999999999999999999999999999999999999999998653 4666664
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.33 E-value=1.2e-05 Score=72.21 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
.....+++.+.++...|++++|...++++++..|+.. .++...|.++...|++++|+..+.+++..+|++.... ..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL-NN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH-HH
Confidence 3445789999999999999999999999998776643 4677888899999999999999999999999987654 78
Q ss_pred HHHHHHHcCChHHHHHH
Q 012265 193 RAQVAAAANHPFIAAES 209 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~ 209 (467)
++.+|...|+...|...
T Consensus 112 lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHcCChHhHhhC
Confidence 89999998887665433
No 139
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.32 E-value=1e-06 Score=65.43 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~ 217 (467)
..|..++..|++++|+..|+++++.+|++... ++.+|.++..+|++++|+..|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a-~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEA-WYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35666777888888888888888888877665 3777888888888888888877776543
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.32 E-value=5.3e-06 Score=79.62 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=85.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHH
Q 012265 119 AIYANRVLLL-LHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLA 192 (467)
Q Consensus 119 ~l~~n~all~-l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~ 192 (467)
...|+.+.-+ +..|++++|+..|+.+++.+|++. .+++..|.+|+..|++++|+..|+.++..+|++.. .+.+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3567777765 567899999999999999999985 57889999999999999999999999999998522 23478
Q ss_pred HHHHHHHcCChHHHHHHHhccccCCC
Q 012265 193 RAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
+|.+|...|++++|+.+|+++++..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 89999999999999999999986544
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.4e-05 Score=74.55 Aligned_cols=115 Identities=15% Similarity=0.040 Sum_probs=98.6
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC---ChHHHHHHH
Q 012265 134 MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN---HPFIAAESL 210 (467)
Q Consensus 134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g---~~~~A~~~L 210 (467)
.+..+..++.-+..+|++...+.+++.+|...|++..|...|.+++...|+++..+ +.+|.++..+. ...++...|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~-~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEIL-LGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCCcccHHHHHHH
Confidence 45555566667788999999999999999999999999999999999999998865 88888776543 356889999
Q ss_pred hccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 211 AKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 211 ~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
++++..++ +....+.|+.-+.++|++.+|...++..+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 99998887 7778889999999999999999999998875
No 142
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=0.0001 Score=73.77 Aligned_cols=175 Identities=18% Similarity=0.250 Sum_probs=140.7
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHhccccCCCCc----hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 120 IYANRVLL-LLHANKMDQARELVAALPDMFPDSV----MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 120 l~~n~all-~l~~~~~~~A~~~~~~l~~~~P~~~----~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
++.|.|+. .+...+.+.+++++...+++-|... -.+++-|...+++.+...|.++|..++-..|.+-.. -...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF--k~YI 444 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF--KGYI 444 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH--HHHH
Confidence 55666653 5678889999999999998888643 257788888899999999999999999999987532 3456
Q ss_pred HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
.+-++.++++-+..+|++.++.++ +-..|...+.+-..+|+.+-|..+|+-|++. |.-+.-..+|.....|-..
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q-----p~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ-----PALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-----cccccHHHHHHHhhhhhhh
Confidence 677789999999999999998766 4556888899999999999999999998863 2112223456667788899
Q ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265 274 HGREEDASHLFEELVKTHGSIEALVGLV 301 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~pd~~ala~Lv 301 (467)
.|.++.|..+|+++|...+...+++.+.
T Consensus 520 ~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred cchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 9999999999999999988766666554
No 143
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.30 E-value=0.00015 Score=82.13 Aligned_cols=171 Identities=14% Similarity=0.096 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----HHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-----cHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-----PLLLQAAVLVRENKAGKAEELLGQFAEKLPD-----KSKI 188 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-----~~~~ 188 (467)
.+....+.+++..|+++.|...++.++...|.... +....+.++...|++++|...+.+++..... ....
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 34556788889999999999999988765554332 2345566778899999999999998865332 1112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCC------CCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQ------HMP---ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK 259 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~------~~p---~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 259 (467)
....++.++..+|++++|...+++++++. ..+ .+...++.++...|++++|...+.+++....... +..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQ 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC--chH
Confidence 33677999999999999999999887531 112 1234567788889999999999999988754322 122
Q ss_pred HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 260 LSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
....+..+|.++...|++++|...++++....
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 23344557889999999999999999997753
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=1.5e-05 Score=80.54 Aligned_cols=92 Identities=21% Similarity=0.076 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
.-.+.+++..++-.+|.+++.+.+..+|.+...+.++|..++..++++.|+.+.++++...|++-..+ +.||++|+..|
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W-~~La~~Yi~~~ 282 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW-YQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH-HHHHHHHHhcC
Confidence 34677777888888999999999999999988888999999999999999999999999999998776 89999999999
Q ss_pred ChHHHHHHHhccc
Q 012265 202 HPFIAAESLAKIP 214 (467)
Q Consensus 202 ~~~~A~~~L~~~~ 214 (467)
++++|+..|+.+.
T Consensus 283 d~e~ALlaLNs~P 295 (395)
T PF09295_consen 283 DFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHhcCc
Confidence 9999999999885
No 145
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=1.9e-05 Score=82.69 Aligned_cols=210 Identities=16% Similarity=0.092 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
+..++|.++...|=+.+|..||+++---+| .+.. |..+++...+....+... +++
T Consensus 400 ~q~~laell~slGitksAl~I~Erlemw~~---vi~C-----Y~~lg~~~kaeei~~q~l---ek~-------------- 454 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEMWDP---VILC-----YLLLGQHGKAEEINRQEL---EKD-------------- 454 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHHHHH---HHHH-----HHHhcccchHHHHHHHHh---cCC--------------
Confidence 457889999999999999999998765433 2222 222333333333222221 110
Q ss_pred CHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 113 SPKQREAIYANRVLLLLHANK-------MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~-------~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
|-.++|...|+ +++|.++.+.... .+....|...+.++++.++.+.++..++.+|-.
T Consensus 455 ----------~d~~lyc~LGDv~~d~s~yEkawElsn~~sa------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq 518 (777)
T KOG1128|consen 455 ----------PDPRLYCLLGDVLHDPSLYEKAWELSNYISA------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ 518 (777)
T ss_pred ----------CcchhHHHhhhhccChHHHHHHHHHhhhhhH------HHHHhhccccccchhHHHHHHHHHHHhhcCccc
Confidence 12334444444 4556555554322 244445555567899999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265 186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 264 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll 264 (467)
...+ +.++-++++.+++..|...|...+.+++ +...|+++...|+..++..+|...+.+|+....+ +- .+|
T Consensus 519 ~~~w-f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~----~w---~iW 590 (777)
T KOG1128|consen 519 LGTW-FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ----HW---QIW 590 (777)
T ss_pred hhHH-HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC----CC---eee
Confidence 8765 9999999999999999999999998876 5667999999999999999999999999975311 11 234
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 265 QEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+.-.+....|.+++|...|.+++...
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhh
Confidence 444445678899999999999999765
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=2.5e-05 Score=69.89 Aligned_cols=94 Identities=15% Similarity=0.002 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR 193 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L 193 (467)
....+++.+.++...|++++|...+..++...|++. .++...|.++...|++++|+..+++++..+|..... +..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~-~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA-LNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHH
Confidence 345678999999999999999999999988877643 356778889999999999999999999999998765 4778
Q ss_pred HHHHH-------HcCChHHHHHHHh
Q 012265 194 AQVAA-------AANHPFIAAESLA 211 (467)
Q Consensus 194 aql~~-------~~g~~~~A~~~L~ 211 (467)
+.+|. ..|++++|+..+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 88888 5555554444333
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=3.2e-06 Score=63.48 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-ChHHHHHHHhcccc
Q 012265 154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-HPFIAAESLAKIPD 215 (467)
Q Consensus 154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-~~~~A~~~L~~~~~ 215 (467)
.+...|.++...|++++|+..|.++++.+|++... ++.+|.+|..+| ++++|+..++++++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~-~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEA-YYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555443 255555555555 45555555555543
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=5.9e-05 Score=71.36 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
...|||+|-...++.+|...|+++-...|......+--+..++... -+.++++-+..+.+. +.|
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~---i~ADALrV~~~~~D~--------~~L----- 110 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC---IYADALRVAFLLLDN--------PAL----- 110 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc---ccHHHHHHHHHhcCC--------HHH-----
Confidence 3557788888888888888888877777765555443223333222 234555544332111 011
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265 114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR 193 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L 193 (467)
....+.+ .+-+.+..+++-.|+.+++++...+ ......-.+-++.+.|+++.|++.++.++....-++..+ +.+
T Consensus 111 --~~~~lqL-qaAIkYse~Dl~g~rsLveQlp~en--~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA-Yni 184 (459)
T KOG4340|consen 111 --HSRVLQL-QAAIKYSEGDLPGSRSLVEQLPSEN--EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA-YNL 184 (459)
T ss_pred --HHHHHHH-HHHHhcccccCcchHHHHHhccCCC--ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH-HHH
Confidence 1112222 3444556677777777777654211 222334556667788888888888888777655454444 677
Q ss_pred HHHHHHcCChHHHHHHHhcccc
Q 012265 194 AQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~ 215 (467)
|-.+.+.|+++.|+.....+++
T Consensus 185 ALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 185 ALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 7777788888888888777765
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.17 E-value=4.5e-06 Score=62.68 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCC
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLP 183 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~-~~~~A~~~l~~~l~~~P 183 (467)
.++++.+..++..|++++|+..|++++..+|++..++...|.++...| ++.+|+..++++++.+|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456666777777777777777777777777777666666666666666 56777777777766665
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.17 E-value=0.00021 Score=79.54 Aligned_cols=171 Identities=14% Similarity=0.191 Sum_probs=134.5
Q ss_pred cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265 131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL 210 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L 210 (467)
-|.-+.+.+.|+++.+ +-+....++-+..+|.+..++++|.++|+.+++++-+.... +..+++.++++++-++|..+|
T Consensus 1510 yG~eesl~kVFeRAcq-ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v-W~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQ-YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV-WIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred hCcHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH-HHHHHHHHhcccHHHHHHHHH
Confidence 4556777788888764 44444556667778999999999999999999999855544 588999999999999999999
Q ss_pred hccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265 211 AKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 287 (467)
Q Consensus 211 ~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~l 287 (467)
.+++..-+ +-+++...+.+-.+.|+.+.+..+|+..+.-|+.+ .++|.-....-..+|+.+.+..+|+++
T Consensus 1588 ~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99986432 56778888899999999999999999998876432 246766677778899999999999999
Q ss_pred HHhc-C--CHHHHHHHHHHh--ccCChh
Q 012265 288 VKTH-G--SIEALVGLVTTS--AHVDVD 310 (467)
Q Consensus 288 l~~~-p--d~~ala~Lv~a~--~~~d~~ 310 (467)
+... + ....+....+.| ++.|-.
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 9887 3 356667767777 445543
No 151
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.17 E-value=1e-05 Score=61.38 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=53.7
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
..+++..++++.|.+.++.++..+|++..+++..|.++...|++.+|...|+++++..|++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 3567788888888888888888888888888888888888888888888888888888887654
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.15 E-value=6.1e-05 Score=66.72 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---ChhHHHHHHHHH
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEK-LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALK 230 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly 230 (467)
.+-++..+...|++.+|...|++.+.- +-++.. +.+.+|+..+..+++.+|..+|+.+.+..+ .|+....++..|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 344556677889999999999998763 455654 448899999999999999999999987543 677777889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 231 ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 231 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
..+|++..|...|+.++.+|+. +.- ..+ .+.++..+|+..+|...|..+..
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg-----~~a--r~~-Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPG-----PQA--RIY-YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCC-----HHH--HHH-HHHHHHHhcchhHHHHHHHHHHH
Confidence 9999999999999999998732 221 122 58889999988877665555543
No 153
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=3.2e-05 Score=73.12 Aligned_cols=197 Identities=18% Similarity=0.144 Sum_probs=139.1
Q ss_pred HHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHH
Q 012265 129 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAE 208 (467)
Q Consensus 129 l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~ 208 (467)
++-.+++.|++++....+..|.+..+.-+++..|+...++.+|-.+|+++...+|..... ++..||.+.+.+.+.+|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY-rlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY-RLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH-HHHHHHHHHHhcccHHHHH
Confidence 566778899999998888999888888888889999999999999999999999988765 5888999999999999999
Q ss_pred HHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265 209 SLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 287 (467)
Q Consensus 209 ~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~l 287 (467)
++..+.+.+. ....+..-+.+.-..+++..+..++++... ++. ...+...|-++.+.|++++|+.-|+.+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-------en~--Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-------ENE--ADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-------CCc--cchhccchheeeccccHHHHHHHHHHH
Confidence 9998886321 222333445666677888888877776321 111 112334577788899999999999999
Q ss_pred HHhcCC-HHHHHHHHHH-hccCChhHHHHHHhc--------CCCCC-C--CCCcChhhhhh
Q 012265 288 VKTHGS-IEALVGLVTT-SAHVDVDKAESYEKR--------LKPLP-G--LNGVDVDSLEK 335 (467)
Q Consensus 288 l~~~pd-~~ala~Lv~a-~~~~d~~kA~~l~~~--------L~~~~-~--~~~vDvd~Le~ 335 (467)
++..+- .-...++.+| |+..+.+.|..+++. -|.+. + +.+|||...-+
T Consensus 171 lqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred HhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 987642 2122233333 456666667666542 34331 1 25788766654
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=4.6e-05 Score=74.28 Aligned_cols=157 Identities=20% Similarity=0.156 Sum_probs=103.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----C-C--ChhHHHHHH
Q 012265 160 AVLVRENKAGKAEELLGQFAEKL-----PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI----Q-H--MPATVATLV 227 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~-~--~p~~~~~l~ 227 (467)
..+-..|++++|...|.++...+ +......+...+.+| ..+++++|+.+|++++++ . + -..+...++
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA 121 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA 121 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34456788888888888776543 112222223444454 455999999999999753 1 1 123466789
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CC-----HHHHH
Q 012265 228 ALKERA-GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GS-----IEALV 298 (467)
Q Consensus 228 ~ly~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd-----~~ala 298 (467)
.+|... |+++.|+.+|++|+.+|.... ........+..+|.++.+.|+|++|+.+|+++.... +- ...+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 999998 999999999999999997533 223445677789999999999999999999998764 21 12333
Q ss_pred HHHHHh-ccCChhHHHHHHhc
Q 012265 299 GLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 299 ~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
..++++ ...|+-.|......
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 444444 56687777665544
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.12 E-value=0.0034 Score=61.75 Aligned_cols=258 Identities=18% Similarity=0.099 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhh-hccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV-ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~-~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
.|++.-|......|++++|..-|+.++. |+.+.++....|+ .....+....+.++.+...+..++ +
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-------l-- 187 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-------L-- 187 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-------C--
Confidence 5677778888999999999999999885 5566654433333 333344555566655544332221 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC---chHHHHHHHHH-HhcCChhHHHHHHHHHHHhCC
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPDS---VMPLLLQAAVL-VRENKAGKAEELLGQFAEKLP 183 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~---~~~~ll~a~l~-~~~~~~~~A~~~l~~~l~~~P 183 (467)
-| ......--.+..|+++.|+++++.-... .++. ..+.++.+... .-+-+...|...-.+.++..|
T Consensus 188 -----~W--A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~p 260 (531)
T COG3898 188 -----PW--AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAP 260 (531)
T ss_pred -----ch--HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 11 1222233456789999999999864422 2322 22445544433 335567788888889999999
Q ss_pred CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 012265 184 DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI 263 (467)
Q Consensus 184 ~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~l 263 (467)
+-...+ +.-+..|++.|+..++-.+|+.+....++|.+.. +|....--+.++.-++.+-... ...+ ++..+.
T Consensus 261 dlvPaa-v~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~-slk~--nnaes~ 332 (531)
T COG3898 261 DLVPAA-VVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLE-SLKP--NNAESS 332 (531)
T ss_pred ccchHH-HHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHH-hcCc--cchHHH
Confidence 988776 7889999999999999999999998888997663 3444444445666666655432 1122 222233
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHH--HHHhccCChhHHHHHHhc
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGL--VTTSAHVDVDKAESYEKR 318 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~L--v~a~~~~d~~kA~~l~~~ 318 (467)
+ .++..-+..|++..|..--+.+....|...+...| |..-...|-.++.+.+.+
T Consensus 333 ~-~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 333 L-AVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred H-HHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 3 36888889999999999988888877754222222 222245788888887754
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.12 E-value=0.00018 Score=75.85 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=101.1
Q ss_pred ccCCCCchH--HHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc--------CChHHHHHHHhc
Q 012265 146 DMFPDSVMP--LLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAAA--------NHPFIAAESLAK 212 (467)
Q Consensus 146 ~~~P~~~~~--~ll~a~l~~~~~~---~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~--------g~~~~A~~~L~~ 212 (467)
..-|.+..+ .++.|.-++..+. ...|+.+|+++++.+|++..+. -.++..|... .+...|...+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~-A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQ-AEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 445666665 4566665655444 6689999999999999986542 4445555432 234456666666
Q ss_pred cccC--C-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 213 IPDI--Q-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 213 ~~~~--~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
+..+ . ..|.++..++..+...|++++|...|++|+..- +.. ..+..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-------ps~-~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-------MSW-LNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5543 2 256677778888888999999999999999752 122 2455579999999999999999999999
Q ss_pred hcCCH
Q 012265 290 THGSI 294 (467)
Q Consensus 290 ~~pd~ 294 (467)
.+|..
T Consensus 482 L~P~~ 486 (517)
T PRK10153 482 LRPGE 486 (517)
T ss_pred cCCCC
Confidence 99864
No 157
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=1.8e-05 Score=74.53 Aligned_cols=95 Identities=22% Similarity=0.185 Sum_probs=81.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHcCChHHHHHHHhccccC----CCChhHHHHHHHHH
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLARAQVAAAANHPFIAAESLAKIPDI----QHMPATVATLVALK 230 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~~p~~~~~l~~ly 230 (467)
-.|.-+++.|+|.+|+..|..++..+|++.- .++|+|++.+..+|+|++|..+|..+..- ...|+.+..|+.+.
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 3444578999999999999999999998532 35699999999999999999999998742 23678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHH
Q 012265 231 ERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 231 ~~~g~~~~A~~~l~~al~~~~ 251 (467)
..+|+.++|...|++++..|+
T Consensus 226 ~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 226 GRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999874
No 158
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.10 E-value=4e-05 Score=75.36 Aligned_cols=254 Identities=12% Similarity=0.006 Sum_probs=143.5
Q ss_pred hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc--CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265 28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR--NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA 105 (467)
Q Consensus 28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~--~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 105 (467)
.-|..|+.||+..|+..++|+.|++...-=|.. -..|..--+-...|+ .|.+.+.-.+..+.--...+...+
T Consensus 52 ~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL------GNtlKv~G~fdeA~~cc~rhLd~a 125 (639)
T KOG1130|consen 52 STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL------GNTLKVKGAFDEALTCCFRHLDFA 125 (639)
T ss_pred HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc------cchhhhhcccchHHHHHHHHhHHH
Confidence 348899999999999999999998864321111 001100000011111 111111111111100011123334
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcCCH-------------HHHHHHHHhccccCCCCchHHH-------------HHH
Q 012265 106 RVLDLRLSPKQREAIYANRVLLLLHANKM-------------DQARELVAALPDMFPDSVMPLL-------------LQA 159 (467)
Q Consensus 106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~-------------~~A~~~~~~l~~~~P~~~~~~l-------------l~a 159 (467)
..|-.++. ..-++||.+.+|...|+- +++...++.+++-|-.+....- .++
T Consensus 126 reLgDrv~---e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLG 202 (639)
T KOG1130|consen 126 RELGDRVL---ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLG 202 (639)
T ss_pred HHHhHHHh---hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccC
Confidence 44444432 234689999999887763 4455555555443333222111 122
Q ss_pred HHHHhcCChhHHHHHHHHHHH---hCCCcH--HHHHHHHHHHHHHcCChHHHHHHHhcccc----CCC---ChhHHHHHH
Q 012265 160 AVLVRENKAGKAEELLGQFAE---KLPDKS--KIILLARAQVAAAANHPFIAAESLAKIPD----IQH---MPATVATLV 227 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~---~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~---~p~~~~~l~ 227 (467)
..|+-.|+++.|+..-+.-+. .+.+.. .-++-.|+..|+-.|+++.|++.|...+. +.. ....-+.|+
T Consensus 203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLg 282 (639)
T KOG1130|consen 203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLG 282 (639)
T ss_pred ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhh
Confidence 344567889998865544332 222211 12345678889999999999999998753 221 112234678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..|.-..++..|+.++.+-+...+.-..-.......|. +|..+...|..+.|....+..++..
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS-Lgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWS-LGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 88888888999999888766554332111123444454 7999999999999998888777653
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.09 E-value=0.00015 Score=78.26 Aligned_cols=206 Identities=12% Similarity=0.052 Sum_probs=149.5
Q ss_pred HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265 27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR 106 (467)
Q Consensus 27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 106 (467)
..-++|.+.-||.+|.---+...|...|..+..+++.|.....-+.--+.. ..+...++.-.....+.++-
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae---~~~we~a~~I~l~~~qka~a------ 558 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE---ESTWEEAFEICLRAAQKAPA------ 558 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc---cccHHHHHHHHHHHhhhchH------
Confidence 345889999999999988899999999999999999887766533222221 22333333322221111110
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH
Q 012265 107 VLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS 186 (467)
Q Consensus 107 ~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~ 186 (467)
.....+| ..++..|+..+++.+|...++..+..+|.+...++-.+.+|...|.+.-|++.+.++...+|++.
T Consensus 559 ----~~~k~nW----~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 559 ----FACKENW----VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred ----HHHHhhh----hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 0011122 23789999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccccCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
- .++..|-+....|.|.+|+..|..++.... ....+..++..+.-+|=...|...+++.++.+
T Consensus 631 y-~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 631 Y-GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred H-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4 468889999999999999999999873211 11233344445555666666777777666544
No 160
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.07 E-value=0.00098 Score=74.49 Aligned_cols=197 Identities=17% Similarity=0.168 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccC-C--CchHH-HHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRN-L--ADESS-FAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~-p--~d~~~-~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
.|++---.+...++.++|.++.+++|..= + .+.-+ ..++.-|+...-+ .-....+-|+++-.. .+
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqy-------cd-- 1528 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQY-------CD-- 1528 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHh-------cc--
Confidence 34443344567789999999999998762 2 22222 2345556543322 222223333332110 01
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--cH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--KS 186 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~~ 186 (467)
.-.++..++-+|-...+++.|.++++.+++.|-+....|+..+..++++++-+.|-.+|.+++..-|. +.
T Consensus 1529 --------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1529 --------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred --------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 12467777889999999999999999999999988889999999999999999999999999999997 55
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
..+ ---||+-.+.|+.+-+..+|+.++...+ ..++|+.++..-++.|+.+.+..+|++++..
T Consensus 1601 ~~I-skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1601 EFI-SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHH-HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555 5669999999999999999999986544 6789998888888999999999999999864
No 161
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6.8e-05 Score=74.05 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=107.4
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
+.+...-..|.+|++.|++..|...|++++..-. +. ... +..+. +.+..
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~------------~~--~~~-~~ee~-~~~~~--------------- 254 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLE------------YR--RSF-DEEEQ-KKAEA--------------- 254 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhh------------cc--ccC-CHHHH-HHHHH---------------
Confidence 4556666789999999999999999999876421 10 000 11111 11110
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
-...+++|.+..++..+.+..|++.++.++...|+|.-+++-.+.++...|+++.|+..|+++++..|+|-.
T Consensus 255 -------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka- 326 (397)
T KOG0543|consen 255 -------LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA- 326 (397)
T ss_pred -------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH-
Confidence 123578999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred HHHHHHHHHHHcCChHHH-HHHHhccc
Q 012265 189 ILLARAQVAAAANHPFIA-AESLAKIP 214 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A-~~~L~~~~ 214 (467)
++.-|..+..+..++.+. ...|.+++
T Consensus 327 ~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 327 ARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555444444333 44444443
No 162
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.06 E-value=2.4e-05 Score=60.24 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 221 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 221 ~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
.++..++.+|..+|++++|+..|++++.......+..+.+...+..+|.++...|++++|+.+|+++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466789999999999999999999998854433333345778888999999999999999999999875
No 163
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.05 E-value=0.00027 Score=76.42 Aligned_cols=246 Identities=13% Similarity=0.061 Sum_probs=154.0
Q ss_pred HHhhhhhHHHHHHHHHH-----HhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhh
Q 012265 26 IEIELAPIAVQLAYVQQ-----LLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ 100 (467)
Q Consensus 26 ~~~El~~i~~qlA~v~~-----~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~ 100 (467)
...+++.+.++.++.+. .+.+...|...|-+.++.++.-.+++..++. ++ ++..+...+.+-+..+.+.
T Consensus 448 k~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~-iY--rd~~Dm~RA~kCf~KAFeL--- 521 (1238)
T KOG1127|consen 448 KMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQ-IY--RDSDDMKRAKKCFDKAFEL--- 521 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHH-HH--HHHHHHHHHHHHHHHHhcC---
Confidence 34445555555554432 2335778888888888888766555544322 21 1111222222222222111
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHH
Q 012265 101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQF 178 (467)
Q Consensus 101 ~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~ 178 (467)
...+- ...-..+-.+.....++.|..++-..-...|... ..+...+-.|..-++...|+..++.+
T Consensus 522 ------------Datda-eaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA 588 (1238)
T KOG1127|consen 522 ------------DATDA-EAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA 588 (1238)
T ss_pred ------------Cchhh-hhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence 11111 1122345566667778888777555444444221 12334555567788999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC
Q 012265 179 AEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257 (467)
Q Consensus 179 l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~ 257 (467)
+...|.+...+ +.|+++|...|+|..|+.+|.++..+++ +....+..+.+....|.+.+|+..+...+.....-.+.-
T Consensus 589 LR~dPkD~n~W-~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q 667 (1238)
T KOG1127|consen 589 LRTDPKDYNLW-LGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ 667 (1238)
T ss_pred hcCCchhHHHH-HHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998865 9999999999999999999999988876 333455667777789999999999987765432211111
Q ss_pred chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 258 ~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..+...+.+.+..+.-.|-+..|.+.|++.++..
T Consensus 668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2333334445666667777778888888877654
No 164
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=0.00017 Score=64.51 Aligned_cols=133 Identities=18% Similarity=0.125 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH---HHHHHHHHHhcCChhHHHHHHHHHHHhCCCc--HHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP---LLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIIL 190 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~---~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~--~~~~~ 190 (467)
|...+.|..+.-.+..+.. .....++++...+|.+..+ .+..|..++..|++++|+..|+..+...-+. ...+.
T Consensus 51 ~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~ 129 (207)
T COG2976 51 QEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHH
Confidence 3445667777777777777 6677788888888887664 4566777889999999999999988654332 12345
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
+.||.+.+.+|.+++|+.+|..+.+-.+.+-+.-..+.++...|+.++|+..|++++..
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 88999999999999999999998765554444556799999999999999999999874
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.02 E-value=0.00012 Score=61.43 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
+++++|.++..+|+.++|+.+|++++....++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~----------------------------------------------- 35 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA----------------------------------------------- 35 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-----------------------------------------------
Confidence 467777777777777777777777665432211
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC---CchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD---SVMPLLLQAAVLVRENKAGKAEELLGQFA 179 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~---~~~~~ll~a~l~~~~~~~~~A~~~l~~~l 179 (467)
+...+..+.+..+...|++++|...++.....+|+ +.....+.|..+...|++++|+..+-..+
T Consensus 36 ---~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 36 ---DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00112334566666667777777777777777776 44555566666667777777776665544
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00034 Score=65.45 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
+...--+.++++.+++++|.+.+... ++.++..+...++++..+.+-|++.++++...+-+. ...-||+.++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~---tLtQLA~awv 180 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA---TLTQLAQAWV 180 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHH
Confidence 44556688999999999999988763 566788899999999999999999999988765332 2244676665
Q ss_pred H----cCChHHHHHHHhcccc-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 199 A----ANHPFIAAESLAKIPD-IQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 199 ~----~g~~~~A~~~L~~~~~-~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
. .+.+.+|.-+|+.+-+ ..+.|.+..-.+.+.+++|++++|..+++.++..+. .....+..+...-+.
T Consensus 181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-------~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-------KDPETLANLIVLALH 253 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-------CCHHHHHHHHHHHHH
Confidence 3 4568999999999987 667888888889999999999999999999997531 222345555555667
Q ss_pred CCChhHHH-HHHHHHHHhcCCHHHHHHH
Q 012265 274 HGREEDAS-HLFEELVKTHGSIEALVGL 300 (467)
Q Consensus 274 ~g~~~~A~-~~le~ll~~~pd~~ala~L 300 (467)
.|...++. +.+.++...+|....+-.+
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHPFVKHL 281 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcchHHHHH
Confidence 78776665 4556666556764343333
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=0.00011 Score=77.29 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHhc--------CChhHHHHHHHHHHHh--CCCcHH
Q 012265 121 YANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVRE--------NKAGKAEELLGQFAEK--LPDKSK 187 (467)
Q Consensus 121 ~~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~--------~~~~~A~~~l~~~l~~--~P~~~~ 187 (467)
.+-++.-++..+. ++.|+.+|+++++.+|++..++-..+..+... .+...+...+.+++.. .|.++.
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 3455666665544 78999999999999999988766655544322 2233455555555553 555654
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
++..+|.+++..|++++|...|+++++++++...+..++.+|...|++++|+..|++|+..
T Consensus 422 -~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 422 -IYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4578888899999999999999999998877667888999999999999999999999875
No 168
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=8.3e-05 Score=70.14 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---SKIILLARA 194 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---~~~~~l~La 194 (467)
.||.++-++..|+|..|...|...++.+|++. .+.+.++..++.+|++.+|...|..++..+|++ ++.+ |-||
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal-lKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL-LKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH-HHHH
Confidence 79999999999999999999999999999975 468888999999999999999999999999875 3444 8999
Q ss_pred HHHHHcCChHHHHHHHhccccC
Q 012265 195 QVAAAANHPFIAAESLAKIPDI 216 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~ 216 (467)
.+....|+.++|+.+|++++.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999863
No 169
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0021 Score=62.49 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh---HHHHHHHHHHHhCCC-----cHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG---KAEELLGQFAEKLPD-----KSKIIL 190 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~---~A~~~l~~~l~~~P~-----~~~~~~ 190 (467)
.+.+|..+-|+..|+..+|..++..+ +|..+.-+++++.+....|+-- +=+++-++++..-.+ +...-+
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 45788888999999999999998876 5766666777776665555432 333444444332111 000112
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
-.+|..+.-..++++-+..+.++...- .+..+...++..+...|++.+|.++|-....-. .. +.. .....+|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~---ik-n~~--~Y~s~LAr 436 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE---IK-NKI--LYKSMLAR 436 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh---hh-hhH--HHHHHHHH
Confidence 344555555566777777766664321 133445566777777777777777765543210 00 111 12223567
Q ss_pred HHHHCCChhHHHHHH
Q 012265 270 FKLRHGREEDASHLF 284 (467)
Q Consensus 270 ~~l~~g~~~~A~~~l 284 (467)
+|.+.++++-|-++|
T Consensus 437 Cyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHhcCCchHHHHHH
Confidence 777777777777666
No 170
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.94 E-value=0.00011 Score=63.04 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLAR 193 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~L 193 (467)
..+++.|.-.+..|+++.|++.++.+...+|.... +.+-++..+.+.+++++|+..++++++.||.++. .+.+..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 45789999999999999999999999999998654 5677788899999999999999999999998654 344555
Q ss_pred HHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
|-.+..+.. ..|..+...+.++. ....|...|+..+..|++
T Consensus 91 gL~~~~~~~-----~~~~~~~~~drD~~-------------~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 91 GLSYYEQDE-----GSLQSFFRSDRDPT-------------PARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHhh-----hHHhhhcccccCcH-------------HHHHHHHHHHHHHHHCcC
Confidence 555544332 33333332222332 234788888888887743
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.00015 Score=60.85 Aligned_cols=93 Identities=17% Similarity=0.054 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---cHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD---KSKIILLAR 193 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~---~~~~~~l~L 193 (467)
+.|+.+.++-..|+.++|+..+++.+...... ..+++..+..+...|++++|+.+|++.+..+|+ +.. ++..+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~-l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA-LRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH-HHHHH
Confidence 56777888888888888888888777654333 235566677777888888888888888888777 433 34667
Q ss_pred HHHHHHcCChHHHHHHHhcc
Q 012265 194 AQVAAAANHPFIAAESLAKI 213 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~ 213 (467)
+..+...|++++|+.++-.+
T Consensus 82 Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 77777888888887776543
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.90 E-value=6.5e-05 Score=65.79 Aligned_cols=95 Identities=11% Similarity=-0.068 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHH
Q 012265 153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE 231 (467)
Q Consensus 153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~ 231 (467)
....-.|.-+...|++++|+.+++-+.-.+|.+...+ +.||.++-..++|++|+..|.-+..++. +|......+..|+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~-~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYT-MGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 3344445555677777777777777777777776665 7777777777777777777776654432 5555666777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 012265 232 RAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 232 ~~g~~~~A~~~l~~al~ 248 (467)
.+|+.+.|+..|..++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77777777777777765
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=97.87 E-value=0.00013 Score=63.94 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
.|..+--+++.|++++|...|.-+.-.+|.+...++-+|.++...++|++|+..|.-+....++++... +..|+.|+..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~-f~agqC~l~l 118 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV-FFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc-chHHHHHHHh
Confidence 466777888999999999999999999999999999999999999999999999999998888887765 8899999999
Q ss_pred CChHHHHHHHhcccc
Q 012265 201 NHPFIAAESLAKIPD 215 (467)
Q Consensus 201 g~~~~A~~~L~~~~~ 215 (467)
|+...|...|+.+++
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999987
No 174
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.85 E-value=0.0085 Score=62.49 Aligned_cols=274 Identities=13% Similarity=0.114 Sum_probs=159.4
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC--chHHHHHH--------Hhhhh--hccCCC------ChhHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA--DESSFAVA--------VNNLV--ALKGPK------DVNDSLKK 90 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~--d~~~~~va--------~nnl~--~l~~~~------~~~~a~~~ 90 (467)
++.-.|+-||.-|.+.|+++.|..+|++.+..-.. |-...+-+ .+..+ +.+... +..-.+..
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 46788999999999999999999999998875321 11111100 00000 000111 11122222
Q ss_pred hhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccccCCCC----c-hHHHHHHHHHHh
Q 012265 91 LDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAA-LPDMFPDS----V-MPLLLQAAVLVR 164 (467)
Q Consensus 91 l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~-l~~~~P~~----~-~~~ll~a~l~~~ 164 (467)
++.+.+..+-.. ...+ -......+.--.-.+-++.|+..+-+..+.+ +.+.+|.- + ..+.-.|.+|..
T Consensus 326 ~e~lm~rr~~~l--NsVl----LRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 326 FESLMNRRPLLL--NSVL----LRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHhccchHH--HHHH----HhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 222222111000 0000 0000000111122344555554444444443 34455543 2 245567888999
Q ss_pred cCChhHHHHHHHHHHHhC-CC--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-------------------CChhH
Q 012265 165 ENKAGKAEELLGQFAEKL-PD--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-------------------HMPAT 222 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~-P~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-------------------~~p~~ 222 (467)
.|+.+.|..+++++.... +. +...++..-|..-+...+++.|..+++.+..+. .++.+
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 999999999999988753 22 222344666788888999999999999885321 13456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CC-HHH---
Q 012265 223 VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GS-IEA--- 296 (467)
Q Consensus 223 ~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd-~~a--- 296 (467)
|+.++.+....|-++.-..+|++.+..- . ..|+ +..+.|.|+..+.-++++..+|++-+.++ |. .+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLr---i-aTPq---ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLR---I-ATPQ---IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHh---c-CCHH---HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 7778888888888888888888887651 1 1122 34456888888888888888888888887 33 122
Q ss_pred -HHHHHHHhccCChhHHHHH
Q 012265 297 -LVGLVTTSAHVDVDKAESY 315 (467)
Q Consensus 297 -la~Lv~a~~~~d~~kA~~l 315 (467)
+..++.-|....+++|..|
T Consensus 553 YLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHH
Confidence 3445556667777777544
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.84 E-value=5.2e-05 Score=57.44 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
.+|...+++++|+..++.++..+|++... ++.+|.+|..+|++.+|+..|+++++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPEL-WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchh-hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46778888999999999999888888765 47888889999999999999888887665
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.00043 Score=61.42 Aligned_cols=126 Identities=15% Similarity=0.059 Sum_probs=104.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH
Q 012265 122 ANRVLLLLHANKMDQARELVAALP-DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--KSKIILLARAQVAA 198 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~-~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~~~~~~l~Laql~~ 198 (467)
+..+..+...|++.+|...+++.+ ..|-++....+-.|..++..++...|...|+.+.+.+|. .+.. .+.+|+.|.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-~Ll~aR~la 171 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-HLLFARTLA 171 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-hHHHHHHHH
Confidence 456778889999999999998765 567777777778888889999999999999999998875 2333 488999999
Q ss_pred HcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 199 AANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
.+|++.+|...|+.+++.-+.|......+..+..+|+.++|..-+.....
T Consensus 172 a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999988666677777778888899999988876665443
No 177
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0011 Score=61.42 Aligned_cols=209 Identities=13% Similarity=0.106 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH-----HHHHH-HHHHhcCChhHHHHHHHHHHHhC-----CCcHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMP-----LLLQA-AVLVRENKAGKAEELLGQFAEKL-----PDKSKI 188 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~-----~ll~a-~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~ 188 (467)
++..-+..+-..+++++|...+.++.+-+-++... ..-.+ .++-...++.++..+++++...+ |+...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA- 111 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA- 111 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH-
Confidence 34444555556788999999888887555444332 12222 33345688899999999887654 44332
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccC---CC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDI---QH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 261 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 261 (467)
..+-.|-=.++.-++++|+++|++.+.+ +. ...++...+.+|.+...+++|...|.+-..++..-..-+....
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 2255566667888999999999998642 11 2345677888999999999998888776666544221112222
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-----CHHHHHHHHHHhccCChhHHHHHHhcCCCCCCCCCcChhhhh
Q 012265 262 VIMQEAASFKLRHGREEDASHLFEELVKTHG-----SIEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLE 334 (467)
Q Consensus 262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-----d~~ala~Lv~a~~~~d~~kA~~l~~~L~~~~~~~~vDvd~Le 334 (467)
.+..+..+++-..||..|...|+.-.++.. +..++-+|+.+|...|++.+...++. +.+..+|++=+.
T Consensus 192 -~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s----p~~r~MDneya~ 264 (308)
T KOG1585|consen 192 -AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS----PTVRNMDNEYAH 264 (308)
T ss_pred -HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHcC----hHhhhhhHHHHH
Confidence 233334556667799999999999776642 35778899999999999888777543 346777877654
No 178
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0019 Score=61.53 Aligned_cols=169 Identities=21% Similarity=0.190 Sum_probs=114.7
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 136 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
+-++.+++++.. .....+..+.-+...+++.+|..+|..++...|++.... +.|+..|+..|+.+.|..+|..+..
T Consensus 121 qlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~-~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAK-LLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHH-HHHHHHHHHcCChHHHHHHHHhCcc
Confidence 444555555433 223345566667889999999999999999999987654 9999999999999999999999864
Q ss_pred CCCChhHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-C
Q 012265 216 IQHMPATVA--TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-G 292 (467)
Q Consensus 216 ~~~~p~~~~--~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-p 292 (467)
-......+. .-..++.+.....+...+-..+.. .|++.+ +-+.+|..+...|+.++|.+.|-.++..+ .
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-----dPdd~~---aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA-----DPDDVE---AALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 322223332 334566666666655444443322 222322 33457999999999999999999999886 2
Q ss_pred --C---HHHHHHHHHHhccCChhHHHHHHh
Q 012265 293 --S---IEALVGLVTTSAHVDVDKAESYEK 317 (467)
Q Consensus 293 --d---~~ala~Lv~a~~~~d~~kA~~l~~ 317 (467)
| ...+..+..++...|+ .+..+-+
T Consensus 269 ~~d~~~Rk~lle~f~~~g~~Dp-~~~~~RR 297 (304)
T COG3118 269 FEDGEARKTLLELFEAFGPADP-LVLAYRR 297 (304)
T ss_pred ccCcHHHHHHHHHHHhcCCCCH-HHHHHHH
Confidence 2 3446666666666676 3434433
No 179
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00016 Score=71.41 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccC------CCC---------chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMF------PDS---------VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS 186 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~------P~~---------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~ 186 (467)
.-.+..++..|+|..|...|++++... +.. ...++..|..+++.+.|.+|+..+.++|+..|++.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 345667778888888887777654321 111 11245667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI 236 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~ 236 (467)
.++ |..|++|+..|+|+.|+..|++++.+.+ +-++...|..+-.+..++
T Consensus 292 KAL-yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 292 KAL-YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred hHH-HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 876 9999999999999999999999999876 556666666655554433
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=97.78 E-value=0.0012 Score=67.01 Aligned_cols=153 Identities=10% Similarity=0.047 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCh---hHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHH---------cCChHHHHHHHhccccCCC-C
Q 012265 156 LLQAAVLVRENKA---GKAEELLGQFA---EKLPDKSKIILLARAQVAAA---------ANHPFIAAESLAKIPDIQH-M 219 (467)
Q Consensus 156 ll~a~l~~~~~~~---~~A~~~l~~~l---~~~P~~~~~~~l~Laql~~~---------~g~~~~A~~~L~~~~~~~~-~ 219 (467)
++.|.-.+..+.. ..|+.++.+++ +.+|+..... -.+|..++. .....+|...-++++++++ +
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~-~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECY-CLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 4555544444333 47889999999 8888876643 455665543 2345677888888888876 7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH--HHH
Q 012265 220 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI--EAL 297 (467)
Q Consensus 220 p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~--~al 297 (467)
|.....++.++...++++.|..+|++|+... ++....+...|.++.-.|+.++|.+.++++++.+|.. ..+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 8888889998888999999999999999762 3445566667999999999999999999999999974 334
Q ss_pred HHHHH-HhccCChhHHHHHH
Q 012265 298 VGLVT-TSAHVDVDKAESYE 316 (467)
Q Consensus 298 a~Lv~-a~~~~d~~kA~~l~ 316 (467)
..+.. .|...-.+.|..+.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHcCCchhhhHHHH
Confidence 55555 66666666666553
No 181
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.77 E-value=0.014 Score=60.88 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=161.5
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHhCChHHH-HHHHHHHhccCCCchHHHHHHH-hhhhhcc---CCCChhHHHHhhhhhhh
Q 012265 22 AEDDIEIELAPIAVQLAYVQQLLGNTQEA-FGAYTDIIKRNLADESSFAVAV-NNLVALK---GPKDVNDSLKKLDRIKE 96 (467)
Q Consensus 22 ~~ee~~~El~~i~~qlA~v~~~~G~~~eA-~~~y~~~l~~~p~d~~~~~va~-nnl~~l~---~~~~~~~a~~~l~~~~~ 96 (467)
=|+||.-.--.+...+=||-..+|..++- .-+|+++++.-|.+-.+..--. .-..... .....+..+...
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c----- 90 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNC----- 90 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHH-----
Confidence 36677666668889999999999987654 4689999999998887764211 0011111 112222222211
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC--chHHHHHHHHHHhcCChhHHHHH
Q 012265 97 KDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS--VMPLLLQAAVLVRENKAGKAEEL 174 (467)
Q Consensus 97 ~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~--~~~~ll~a~l~~~~~~~~~A~~~ 174 (467)
+...-.+-+|+. .|+.-.+.+++.++....-+..|+.++..-|-. ..++-+-.......+-.+-++..
T Consensus 91 -----~er~lv~mHkmp-----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 91 -----FERCLVFMHKMP-----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred -----HHHHHHHHhcCC-----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 111111114544 377888899999999999999999887666632 22222222222345556689999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC--------ChhHHHHHHHHHHHcCCH---HHHHHHH
Q 012265 175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVATLVALKERAGDI---DGAAAVL 243 (467)
Q Consensus 175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--------~p~~~~~l~~ly~~~g~~---~~A~~~l 243 (467)
|+++|+..|..... ....+...+++++|.+.|..++..+. +-.+|..+..+..+.-+. -...+.+
T Consensus 161 yrRYLk~~P~~~ee----yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLKVAPEAREE----YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHhcCHHHHHH----HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 99999999987543 35577789999999999999985321 334566666666554322 1223445
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
+..+..| .+++.-+|..+|..|.+.|+++.|.++|++++..--
T Consensus 237 R~gi~rf------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~ 279 (835)
T KOG2047|consen 237 RGGIRRF------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM 279 (835)
T ss_pred HhhcccC------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence 5555444 245566888999999999999999999999998653
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.00064 Score=61.77 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=90.7
Q ss_pred HHH-HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Q 012265 122 ANR-VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA-- 198 (467)
Q Consensus 122 ~n~-all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~-- 198 (467)
||. ++-+...|++|.|.+.|+.+.+.+|.+.-+.+..+..+.--|++.-|.+-+.++-..+|+++--. +. +|+
T Consensus 102 fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~-LW---LYl~E 177 (297)
T COG4785 102 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS-LW---LYLNE 177 (297)
T ss_pred HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH-HH---HHHHH
Confidence 443 34444567777777777777777777777776666666667777777777777777777765322 22 233
Q ss_pred HcCChHHHHHHHh-ccccCCCChhHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265 199 AANHPFIAAESLA-KIPDIQHMPATVA-TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 276 (467)
Q Consensus 199 ~~g~~~~A~~~L~-~~~~~~~~p~~~~-~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~ 276 (467)
..=++.+|...|. ++... +.+.|. .++.+|+..=..+ .+++++...-.++..-...+....+-+|..++..|+
T Consensus 178 ~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 QKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred hhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2334555555443 22222 223332 3455555332222 233333322111100011233344557888899999
Q ss_pred hhHHHHHHHHHHHhc
Q 012265 277 EEDASHLFEELVKTH 291 (467)
Q Consensus 277 ~~~A~~~le~ll~~~ 291 (467)
.++|..+|+-++..+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888754
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.77 E-value=0.0012 Score=70.86 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=87.7
Q ss_pred HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265 128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 207 (467)
Q Consensus 128 ~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~ 207 (467)
.+..+++.+|...+.++++.+|+...+..+.|..+.+.|++++|..+|+..-...+++...+ -.+..+|...|++++|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL-q~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL-QFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH-HHHHHHHHHHhhhhHHH
Confidence 35667888899999999999999988888999999999999999977776665566655444 56777888999999999
Q ss_pred HHHhccccCCCChhHHHHHHHHHHHcCCHHH
Q 012265 208 ESLAKIPDIQHMPATVATLVALKERAGDIDG 238 (467)
Q Consensus 208 ~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~ 238 (467)
.+|+++....++......++..|.+.+.+.+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999988766666667777888887776643
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.76 E-value=0.0089 Score=56.13 Aligned_cols=191 Identities=10% Similarity=0.128 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
.-+.+.|.-....|++++|...|+.+....|.++-.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-------------------------------------------- 70 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-------------------------------------------- 70 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--------------------------------------------
Confidence 346778888888999999999998888777732211
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH---HHHHHHHHHh--------cCChhHHHHHHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP---LLLQAAVLVR--------ENKAGKAEELLGQFAE 180 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~---~ll~a~l~~~--------~~~~~~A~~~l~~~l~ 180 (467)
..+++..+-.++..+++++|+..+++.+..+|.++.+ ..+.+..++. +.-..+|+.-++.++.
T Consensus 71 ------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ 144 (254)
T COG4105 71 ------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ 144 (254)
T ss_pred ------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH
Confidence 1134456777888899999999999999999987653 4466655532 1122468889999999
Q ss_pred hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265 181 KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL 260 (467)
Q Consensus 181 ~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 260 (467)
++|++.-.. .....+-. +... -.+.-+.++..|.+.|.+-.|+.-++.+++-|++ ....
T Consensus 145 ryPnS~Ya~-dA~~~i~~-------~~d~---------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~----t~~~ 203 (254)
T COG4105 145 RYPNSRYAP-DAKARIVK-------LNDA---------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD----TSAV 203 (254)
T ss_pred HCCCCcchh-hHHHHHHH-------HHHH---------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc----ccch
Confidence 999874221 22111111 0000 1123346788999999999999999999887643 2333
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-CCH
Q 012265 261 SVIMQEAASFKLRHGREEDASHLFEELVKTH-GSI 294 (467)
Q Consensus 261 ~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-pd~ 294 (467)
...+..+...|...|-.++|... .+++..+ |+.
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s 237 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKT-AKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence 34455577888889888887664 4555555 553
No 185
>PRK11906 transcriptional regulator; Provisional
Probab=97.72 E-value=0.0019 Score=65.50 Aligned_cols=162 Identities=14% Similarity=0.065 Sum_probs=119.0
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHhcc---ccCCCCchHHHHHHHHHHh---------cCChhHHHHHHHHHHHhCCCcH
Q 012265 122 ANRVLLLLHANK---MDQARELVAALP---DMFPDSVMPLLLQAAVLVR---------ENKAGKAEELLGQFAEKLPDKS 186 (467)
Q Consensus 122 ~n~all~l~~~~---~~~A~~~~~~l~---~~~P~~~~~~ll~a~l~~~---------~~~~~~A~~~l~~~l~~~P~~~ 186 (467)
+.+++-.++.+. .+.|..+|.+++ ..+|+...++-..|..+.. .....+|.++..++++.+|+|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 556666666554 577888899999 8899998887777765532 2334577889999999999998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
.+ +..+|.++.-.++++.|...|+++..+.+ .+..+...+.+..-.|+.++|...+++++..-+... -..++.
T Consensus 339 ~a-~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~-----~~~~~~ 412 (458)
T PRK11906 339 KI-LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR-----KAVVIK 412 (458)
T ss_pred HH-HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh-----HHHHHH
Confidence 75 48999999999999999999999999877 455677888888899999999999999987532211 111222
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 266 EAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
.....|+ ....++|+.+|-+--+.
T Consensus 413 ~~~~~~~-~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 413 ECVDMYV-PNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHHc-CCchhhhHHHHhhcccc
Confidence 1122343 44677888887654443
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.71 E-value=0.032 Score=49.83 Aligned_cols=170 Identities=22% Similarity=0.148 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHH-HHHhcCChhHHHHHHHHHHHhCCC--cHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA-VLVRENKAGKAEELLGQFAEKLPD--KSKIILLAR 193 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~-l~~~~~~~~~A~~~l~~~l~~~P~--~~~~~~l~L 193 (467)
.....++.+..+...+.+..+...+.......+.+......... ++...+++++|...+.+++...|. ......+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 34567778888888899999999999999888777555555555 788999999999999999887762 322333666
Q ss_pred HHHHHHcCChHHHHHHHhccccCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQHM--PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK 271 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~~--p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~ 271 (467)
+..+...++++.|+..+.+++..... ......++..+...++++.|...+..++...+. ....+...+..+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~ 246 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-------NAEALYNLALLL 246 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-------cHHHHhhHHHHH
Confidence 77788899999999999999876543 456778889999999999999999998875321 111233345556
Q ss_pred HHCCChhHHHHHHHHHHHhcCC
Q 012265 272 LRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 272 l~~g~~~~A~~~le~ll~~~pd 293 (467)
...|.++++...+.+++...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 247 LELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcCCHHHHHHHHHHHHHhCcc
Confidence 6778899999999999998876
No 187
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0083 Score=64.09 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
++.--+.-+-..|..|.|+..+..+.. ++-...+++-+|+.++|-++-++ ..+. ++.+.||+.|.+
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~-AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE-----SGDK-AACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh-----cccH-HHHHHHHHHhhh
Confidence 333344444457888888888877653 34455566778888888776543 2333 345899999999
Q ss_pred cCChHHHHHHHhcccc----------CCCC-----------hhHHHHHHHHHHHcC-CHHHHHHHHHHH------H----
Q 012265 200 ANHPFIAAESLAKIPD----------IQHM-----------PATVATLVALKERAG-DIDGAAAVLDSA------I---- 247 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~----------~~~~-----------p~~~~~l~~ly~~~g-~~~~A~~~l~~a------l---- 247 (467)
.|++.+|+..|.++-. .+.. +.-....+..|...| ..+.|.-+|.+| +
T Consensus 980 ~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHH
Confidence 9999999988887631 1111 111112344555554 555565555532 1
Q ss_pred --------HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHhcC
Q 012265 248 --------KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRL 319 (467)
Q Consensus 248 --------~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l~~~L 319 (467)
+.-......+.+ ..++...+.|+..+.+|+.|..++-.+.+.. +-+-....-++.-.+++.+.+
T Consensus 1060 ~tqQf~aL~lIa~DLd~~sD-p~ll~RcadFF~~~~qyekAV~lL~~ar~~~-------~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSD-PKLLRRCADFFENNQQYEKAVNLLCLAREFS-------GALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred hhcccHHHHHHHHhcCCCCC-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCchhHHHHHhc
Confidence 111111111111 2467778999999999999999887766532 212222344555566777777
Q ss_pred CCC
Q 012265 320 KPL 322 (467)
Q Consensus 320 ~~~ 322 (467)
.|-
T Consensus 1132 Tp~ 1134 (1416)
T KOG3617|consen 1132 TPT 1134 (1416)
T ss_pred CcC
Confidence 775
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.67 E-value=0.00066 Score=58.22 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=58.8
Q ss_pred CCCCchH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhH
Q 012265 148 FPDSVMP-LLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT 222 (467)
Q Consensus 148 ~P~~~~~-~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~ 222 (467)
-|+.... +.-.|...++.|+|.+|++.|+.+..++|.. ...+.|.|+..|..+|++++|+..+++++.+.+ +|.+
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3554444 3455666789999999999999999999863 234568999999999999999999999998876 5543
No 189
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.0027 Score=63.92 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=131.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 202 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~ 202 (467)
..+.-...++.+..|+.+++.++..+-.+...++--|..-++.+....|..+..+++..-|.-...+ +-...+-...||
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgN 156 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcc
Confidence 4455666677788888999988888877777777777777788888888888888888888754432 544445556789
Q ss_pred hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHH
Q 012265 203 PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH 282 (467)
Q Consensus 203 ~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~ 282 (467)
..-|.++|++.++..+....|...+..-++.+..+.|...+++-+-.. +.+. .|...+.|-.++|...-|..
T Consensus 157 i~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-------P~v~-~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-------PKVS-NWIKYARFEEKHGNVALARS 228 (677)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-------ccHH-HHHHHHHHHHhcCcHHHHHH
Confidence 999999999888877766677777888888888888888888765432 2222 24446888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccCC
Q 012265 283 LFEELVKTHGSIEALVGLVTTSAHVD 308 (467)
Q Consensus 283 ~le~ll~~~pd~~ala~Lv~a~~~~d 308 (467)
+|+.++....|......|+.|++.+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFE 254 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99888887766555556666666554
No 190
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.55 E-value=0.0091 Score=54.50 Aligned_cols=208 Identities=16% Similarity=0.092 Sum_probs=129.8
Q ss_pred hcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhh
Q 012265 16 LTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIK 95 (467)
Q Consensus 16 l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~ 95 (467)
|..-++++|+ -+..++..|..|-..|=.+-|.--|.+.+.+.|+-+.+.-..+.-+. . ..+...++..+....
T Consensus 54 L~~~~l~~ee----RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~--a~~fdaa~eaFds~~ 126 (297)
T COG4785 54 LASRALTDEE----RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-Q--AGNFDAAYEAFDSVL 126 (297)
T ss_pred HHhccCChHH----HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-h--cccchHHHHHhhhHh
Confidence 3344555554 34556777888888888888888888889998977766643332221 1 234444555444333
Q ss_pred hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHH
Q 012265 96 EKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELL 175 (467)
Q Consensus 96 ~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l 175 (467)
+.+| +..-..+|+++.+++-|++.-|.+-+...-..+|.++.-.+-. .+-...-+..+|...+
T Consensus 127 ELDp----------------~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-Yl~E~k~dP~~A~tnL 189 (297)
T COG4785 127 ELDP----------------TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-YLNEQKLDPKQAKTNL 189 (297)
T ss_pred ccCC----------------cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH-HHHHhhCCHHHHHHHH
Confidence 3222 3345678999999999999999999998888899887532221 1112345667887766
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 176 GQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-----HMPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 176 ~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-----~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.+-.....+. .+-..+++.|+.+=.-+.+.+.+......+ .-......|+..|...|+.++|..+|+-++..
T Consensus 190 ~qR~~~~d~e--~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 190 KQRAEKSDKE--QWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhccHh--hhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 6544444322 233456677754433333333333222111 12345677899999999999999999988764
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0017 Score=63.09 Aligned_cols=128 Identities=10% Similarity=0.091 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh-cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR-ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~-~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
...+...-..+..+.|+.+|.++.+..+-...+++..|.+-.. .++.+.|.++|+..++.+|.+...+ +..+..++..
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~-~~Y~~~l~~~ 83 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFW-LEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHh
Confidence 3444555556669999999999986555566666666766455 5666669999999999999998876 7888999999
Q ss_pred CChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 201 NHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
|+.+.|..+|++++..-. ...+|.....+-...|+.+.+..+.+++.+.+
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999986422 23466667777777888888877777766653
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.0012 Score=59.25 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
-+.+++.|++...+..++++.|+..+.+.+.++|.+..++.-.|.+|.+..++++|+.-|.++++.+|....
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 355788899999999999999999999999999999888888899999999999999999999999998653
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.53 E-value=0.00061 Score=68.93 Aligned_cols=70 Identities=13% Similarity=-0.010 Sum_probs=45.7
Q ss_pred cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265 147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI 216 (467)
Q Consensus 147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~ 216 (467)
.+|++..+++.++.+|...|+|++|+..|+++++.+|++... +++.+|-+|..+|++++|+..|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356666666666666666677777777777777777666531 3466666777777777777777766653
No 194
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0041 Score=55.82 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265 170 KAEELLGQFAEKLPDKSK--IILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVL 243 (467)
Q Consensus 170 ~A~~~l~~~l~~~P~~~~--~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l 243 (467)
+.+..++++...+|.+.- ...+.+|..+...|++++|+..|+..+.... .+-+-..|+.+..++|.+++|+..|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 556677777777766533 2347789999999999999999998885432 2233457899999999999999999
Q ss_pred HHHHHHHHHhccCCchHHH-HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 244 DSAIKWWLNAMTEDNKLSV-IMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 244 ~~al~~~~~~~~~~~~~~~-ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+.... +.+.. ....-|.+++..|+.++|...|++++..+++
T Consensus 150 ~t~~~---------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKE---------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccc---------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 86542 11111 1122499999999999999999999998644
No 195
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0062 Score=56.12 Aligned_cols=171 Identities=12% Similarity=0.116 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHHHc-CChHHHHHHHhccccCC------C-ChhH
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI-----ILLARAQVAAAA-NHPFIAAESLAKIPDIQ------H-MPAT 222 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~-----~~l~Laql~~~~-g~~~~A~~~L~~~~~~~------~-~p~~ 222 (467)
+..|.-.++..+..+|+..|+.+++.+-+-... .+..+|.+|... .++++|+..|+.+.+.- . ....
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC 156 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKC 156 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 445555667778889999999888876543221 134678899766 89999999999986421 1 1112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC------HHH
Q 012265 223 VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS------IEA 296 (467)
Q Consensus 223 ~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd------~~a 296 (467)
+...+.+-.+.+++.+|+..|++...+--++.----.....++..|.+++..+|.-.+...+++-...+|. -..
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckf 236 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKF 236 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHH
Confidence 33455666677899999999998765321100000112334566788889889998888889988888885 133
Q ss_pred HHHHHHHhccCChhHHHHHHhcCCCCCCCCCcC
Q 012265 297 LVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVD 329 (467)
Q Consensus 297 la~Lv~a~~~~d~~kA~~l~~~L~~~~~~~~vD 329 (467)
+.-|+.+....|. +.+......++.|+.+|
T Consensus 237 lk~L~~aieE~d~---e~fte~vkefDsisrLD 266 (288)
T KOG1586|consen 237 LKDLLDAIEEQDI---EKFTEVVKEFDSISRLD 266 (288)
T ss_pred HHHHHHHHhhhhH---HHHHHHHHhhhccchHH
Confidence 5555555554443 34444344444454444
No 196
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0036 Score=58.01 Aligned_cols=131 Identities=20% Similarity=0.177 Sum_probs=99.2
Q ss_pred CChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhh
Q 012265 21 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQ 100 (467)
Q Consensus 21 ~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~ 100 (467)
++++|..- -.|..-|.|.-+.++|++.||..-|..++.. ..||..-.++.++.= -.+.
T Consensus 169 lsddeKmk-av~~l~q~GN~lfk~~~ykEA~~~YreAi~~-----------l~~L~lkEkP~e~eW--~eLd-------- 226 (329)
T KOG0545|consen 169 LSDDEKMK-AVPVLHQEGNRLFKLGRYKEASSKYREAIIC-----------LRNLQLKEKPGEPEW--LELD-------- 226 (329)
T ss_pred CCchHhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHHHHH-----------HHHHHhccCCCChHH--HHHH--------
Confidence 56666554 3477789999999999999999999987642 235433333332210 1111
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012265 101 NFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE 180 (467)
Q Consensus 101 ~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~ 180 (467)
.+...+++|.|..+|..+.|-++++.+..+++.+|+++-+++-.|..+..-=+..+|..-|..+++
T Consensus 227 --------------k~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 227 --------------KMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred --------------HhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 123458899999999999999999999999999999999999888888777788899999999999
Q ss_pred hCCCcHH
Q 012265 181 KLPDKSK 187 (467)
Q Consensus 181 ~~P~~~~ 187 (467)
.+|.-..
T Consensus 293 ldpslas 299 (329)
T KOG0545|consen 293 LDPSLAS 299 (329)
T ss_pred cChhhHH
Confidence 9987433
No 197
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.39 E-value=0.02 Score=51.21 Aligned_cols=167 Identities=21% Similarity=0.192 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc--cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH-H
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPD--MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ-V 196 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~--~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq-l 196 (467)
.....+..+...+.+..+...+..... ..+.........+..+...+++..++..+...+...+..... ...... +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA-EALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH-HHHHHHHH
Confidence 455667778888889888888888776 566666667777777888899999999999999977765332 244455 8
Q ss_pred HHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 012265 197 AAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL 272 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l 272 (467)
+...|+++.|...+.+++.... .......+...+...++++.|+..+..++..+... ....+..++..+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 213 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYL 213 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHH
Confidence 9999999999999999865332 12233444555778899999999999998764220 1234555788899
Q ss_pred HCCChhHHHHHHHHHHHhcCC
Q 012265 273 RHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 273 ~~g~~~~A~~~le~ll~~~pd 293 (467)
..++++.|...+..++...|+
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcc
Confidence 999999999999999998876
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.37 E-value=0.00027 Score=54.25 Aligned_cols=61 Identities=23% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccC----CC-Chh---HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDI----QH-MPA---TVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~----~~-~p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
+..+|.+|..+|++++|+..|++++++ .. .+. ++..++.+|..+|++++|+.+++++++.+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 478888999999999999999988753 11 222 35678999999999999999999988764
No 199
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.36 E-value=0.06 Score=54.30 Aligned_cols=134 Identities=10% Similarity=0.115 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH--HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA--VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~--va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
-+.+++|+++|+||++.+|..+|.++.....+.+...- +..+-++..- . .+.+..|+.... .++
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-f---l~nld~Me~~l~----------~l~ 72 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-F---LNNLDLMEKQLM----------ELR 72 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-H---HhhHHHHHHHHH----------HHH
Confidence 45789999999999999999999999887544432221 2222111000 0 011111111100 011
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-------------HH--HHHHHHHHhcCChhHHHHH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-------------PL--LLQAAVLVRENKAGKAEEL 174 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-------------~~--ll~a~l~~~~~~~~~A~~~ 174 (467)
.... ...-+.+=.+++.++.+.++.|.+.+......--++.. .+ -+.|..++..|.+.++..+
T Consensus 73 ~~~~--~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 73 QQFG--KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred HhcC--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 1111 11124455678888888888888777755433111110 11 1345566778888888877
Q ss_pred HHHHHHh
Q 012265 175 LGQFAEK 181 (467)
Q Consensus 175 l~~~l~~ 181 (467)
+.+.+.+
T Consensus 151 Ln~i~~~ 157 (549)
T PF07079_consen 151 LNRIIER 157 (549)
T ss_pred HHHHHHH
Confidence 7776654
No 200
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0073 Score=58.44 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=123.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcH--HHHHHHHHHHHHHc
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-LPDKS--KIILLARAQVAAAA 200 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P~~~--~~~~l~Laql~~~~ 200 (467)
.+.+....|++.+|...-++++..+|.+..++-+.-.++.-.|+...-...+++++.+ +|+-+ .+++-.++.-+.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3556677899999999999999999999888777667777788888777788888877 66542 23455677788899
Q ss_pred CChHHHHHHHhccccCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265 201 NHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~ 279 (467)
|-|++|...-.++++++.... ..-.++.++...|++.++.+...+--..|+..-- -..-..|. .|.++...+.|+.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m--lasHNyWH-~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM--LASHNYWH-TALFHIEGAEYEK 265 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH--HHhhhhHH-HHHhhhcccchhH
Confidence 999999999999998875332 2446788999999999999998877766653110 01111233 5888999999999
Q ss_pred HHHHHHHHHH
Q 012265 280 ASHLFEELVK 289 (467)
Q Consensus 280 A~~~le~ll~ 289 (467)
|.++|..-+-
T Consensus 266 aleIyD~ei~ 275 (491)
T KOG2610|consen 266 ALEIYDREIW 275 (491)
T ss_pred HHHHHHHHHH
Confidence 9999987553
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.028 Score=56.29 Aligned_cols=171 Identities=15% Similarity=0.018 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccc----CCCCchHHHHHHHHHHh---cCChhHHHHHHHHHH-HhCCCcHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDM----FPDSVMPLLLQAAVLVR---ENKAGKAEELLGQFA-EKLPDKSKIIL 190 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~----~P~~~~~~ll~a~l~~~---~~~~~~A~~~l~~~l-~~~P~~~~~~~ 190 (467)
.+..|..+.|-..++|+.=+++++.+... .++........|..+.+ .|+.++|+.++..++ ...+.+++.+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~- 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL- 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH-
Confidence 35567788888888999999999988766 45566667778888888 999999999999954 4455555543
Q ss_pred HHHHHHHHH---------cCChHHHHHHHhccccCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------h
Q 012265 191 LARAQVAAA---------ANHPFIAAESLAKIPDIQH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN------A 253 (467)
Q Consensus 191 l~Laql~~~---------~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~------~ 253 (467)
-.+|++|.. ....++|+.+|.+..+++. .+|+ .++.|+...|...+....+++....+.. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI--N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI--NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH--HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 567888752 2347899999999987764 4554 3455666666655554444443311110 1
Q ss_pred ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 254 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 254 ~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
......+ +....++.+.+-.|++++|...++++++..|+
T Consensus 299 ~~~~~dY-Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDY-WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1111222 11222344556689999999999999998865
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.20 E-value=0.0081 Score=62.76 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=96.9
Q ss_pred CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHcCChHHHHHH
Q 012265 133 KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL---PDKSKIILLARAQVAAAANHPFIAAES 209 (467)
Q Consensus 133 ~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~---P~~~~~~~l~Laql~~~~g~~~~A~~~ 209 (467)
..+.|.++++.+...+|++....++.|.++...|+.++|+..++.++... |.-...+.+-++-.++-+.+|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 47899999999999999999989999999999999999999999877532 222223457788889999999999999
Q ss_pred HhccccCCC-ChhHH-HHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q 012265 210 LAKIPDIQH-MPATV-ATLVALKERAGDI-------DGAAAVLDSAIKWWL 251 (467)
Q Consensus 210 L~~~~~~~~-~p~~~-~~l~~ly~~~g~~-------~~A~~~l~~al~~~~ 251 (467)
+..+.+... +++++ +..+.+|...|+. ++|..+|.++-.+-.
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999987543 56654 4567888889999 788888887776554
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.005 Score=60.98 Aligned_cols=268 Identities=13% Similarity=0.009 Sum_probs=152.6
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH----HHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV----AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v----a~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
.+-+.-++++|+...-+..|+.++.....|..++.. ++|.+..+. ++..+++.-. ....++..+-.
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~---DY~kAl~yH~-------hDltlar~lgd 90 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK---DYEKALKYHT-------HDLTLARLLGD 90 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh---hHHHHHhhhh-------hhHHHHHHhcc
Confidence 456888999999999999999999987777665531 222222222 2333332211 11122222323
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---C---CchHHHHHHHHHHhcCC-------------hhHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---D---SVMPLLLQAAVLVRENK-------------AGKA 171 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~---~~~~~ll~a~l~~~~~~-------------~~~A 171 (467)
++.. .-..-|.+..+--.|.|++|..++.+-+...- + ...+++..+.+|...|+ .+++
T Consensus 91 klGE---AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 91 KLGE---AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV 167 (639)
T ss_pred hhcc---ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence 3321 11234666677777888888877765432110 0 11234445555543222 1233
Q ss_pred HHHHHHHHHhCCCcH-------H-----HHHHHHHHHHHHcCChHHHHHHHhccccCC--C-----ChhHHHHHHHHHHH
Q 012265 172 EELLGQFAEKLPDKS-------K-----IILLARAQVAAAANHPFIAAESLAKIPDIQ--H-----MPATVATLVALKER 232 (467)
Q Consensus 172 ~~~l~~~l~~~P~~~-------~-----~~~l~Laql~~~~g~~~~A~~~L~~~~~~~--~-----~p~~~~~l~~ly~~ 232 (467)
...|+.+++.+-++. + -++-.|+..|.-.|+|++|+..-+.=+.+. + .....+.|+..|.-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 333333333221111 1 112345556667889999998765444321 1 22356789999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CC----HHHHHHHHHHhc
Q 012265 233 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GS----IEALVGLVTTSA 305 (467)
Q Consensus 233 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd----~~ala~Lv~a~~ 305 (467)
.|+++.|++.|...+....+.........+ -..+|..|.-..+++.|+.++.+-+++- .| ..+...|..+|.
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQs-cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQS-CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999877654332211112222 3347999988889999999999988764 23 355666777775
Q ss_pred cCC-hhHHHHHH
Q 012265 306 HVD-VDKAESYE 316 (467)
Q Consensus 306 ~~d-~~kA~~l~ 316 (467)
.+. -++|.-++
T Consensus 327 alg~h~kAl~fa 338 (639)
T KOG1130|consen 327 ALGEHRKALYFA 338 (639)
T ss_pred hhhhHHHHHHHH
Confidence 444 46665443
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.17 E-value=0.0011 Score=45.04 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV 70 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v 70 (467)
+++++|.+|..+|++++|+.+|+++++.+|+|..+...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 57899999999999999999999999999999987764
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0081 Score=55.38 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=94.9
Q ss_pred HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC----C-CcHHHHHHHHHHHHHHcC
Q 012265 127 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL----P-DKSKIILLARAQVAAAAN 201 (467)
Q Consensus 127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~----P-~~~~~~~l~Laql~~~~g 201 (467)
+....+++++|.+++.+... ++-..++|..|-..+.++.+.+ . ++.... +.-|.-..+.+
T Consensus 23 lfgg~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~-YveA~~cykk~ 87 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATT-YVEAANCYKKV 87 (288)
T ss_pred ccCCCcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHhhcc
Confidence 44456678999888876542 2223445555555544444322 1 111111 22333334566
Q ss_pred ChHHHHHHHhccccCC-----CCh--hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 202 HPFIAAESLAKIPDIQ-----HMP--ATVATLVALKERA-GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~-----~~p--~~~~~l~~ly~~~-g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
+..+|+.+|++.+++- +.- .....++.+|... .+++.|+..|+++.+||+......... ..+..++.+--.
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN-KC~lKvA~yaa~ 166 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN-KCLLKVAQYAAQ 166 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH-HHHHHHHHHHHH
Confidence 8888888888776531 111 2245678888876 899999999999999997533222222 345567888888
Q ss_pred CCChhHHHHHHHHHHHhc
Q 012265 274 HGREEDASHLFEELVKTH 291 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~ 291 (467)
.|+|.+|+++|+++....
T Consensus 167 leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998765
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.15 E-value=0.0012 Score=44.69 Aligned_cols=41 Identities=29% Similarity=0.216 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
+++..|.+|...|++++|+++|+++++.+|++.... ..||+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~-~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW-RALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH-HHhhh
Confidence 456667777778888888888888888888777643 55554
No 207
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.15 E-value=0.054 Score=53.14 Aligned_cols=249 Identities=14% Similarity=0.040 Sum_probs=150.2
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhc-cCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVAL-KGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
.+-+.+.|.-+..+.+++.|+....+.|.. -+|..-.++...-+... .+...+..++........ .+-.++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~-l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~-------~a~~~~ 77 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEK-LSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID-------TARELE 77 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH-------HHHHHH
Confidence 345566777788889999999998888875 33444444322222211 112233344333221111 111111
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---hccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVA---ALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPD 184 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~---~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~ 184 (467)
+-+ .+ -..++|.+.-+-..-++.+++.... .+....|+.. ...+..+..+...+.++++++.|+.++..--+
T Consensus 78 ds~--~~-~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 78 DSD--FL-LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHH--HH-HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 000 01 1245565554444334444444333 4444444321 23456667778889999999999998875322
Q ss_pred cHH-----HHHHHHHHHHHHcCChHHHHHHHhccccCC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 185 KSK-----IILLARAQVAAAANHPFIAAESLAKIPDIQ-----------HMPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 185 ~~~-----~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-----------~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
+.+ .++..|+.+|....++++|+-...++.++- +.-..+..++-.|..+|+..+|.+..+++..
T Consensus 155 ~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 155 NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 211 245789999999999999998888876421 1122345667777889999999999998876
Q ss_pred HHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 249 WWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 249 ~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.--.. ++..-....+.-+|++|-..|+.+.|..-|+++....
T Consensus 235 lal~~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 235 LALQH-GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHh-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 54222 2223333445668999999999999999999998764
No 208
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.003 Score=56.85 Aligned_cols=94 Identities=19% Similarity=0.083 Sum_probs=79.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCch-----HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVM-----PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
.+.-++..|.|++|...|..++..-|.... .+...|..+++.++++.|+.-+.++++.+|....++ ...|.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl-~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL-ERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH-HHHHHHHH
Confidence 355677889999999999999888876432 233567778999999999999999999999988765 77799999
Q ss_pred HcCChHHHHHHHhccccCCC
Q 012265 199 AANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~ 218 (467)
+..+|++|+.-|.++++.++
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 99999999999999998765
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.0048 Score=60.00 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=99.9
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-cCChHHHHHHHhccccC-CCChhHHHHHHHHHHHcCCHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA-ANHPFIAAESLAKIPDI-QHMPATVATLVALKERAGDIDG 238 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~-~g~~~~A~~~L~~~~~~-~~~p~~~~~l~~ly~~~g~~~~ 238 (467)
...+.+..+.|-.++.++....+-.. .++...|.+... .++.+-|..+|+..+.. ..++.+|...+..+...|+.+.
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~~~~~~~-~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARKDKRCTY-HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCS-T-HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHhCChHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 34455668899999999985443333 345777888666 56666699999999863 3477888888899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Q 012265 239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHV 307 (467)
Q Consensus 239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~ 307 (467)
|..+|++++.. .+.+.....+|.....|-...|+.+....+++++.+..|+...+..++.-|...
T Consensus 89 aR~lfer~i~~----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry~~~ 153 (280)
T PF05843_consen 89 ARALFERAISS----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRYSFL 153 (280)
T ss_dssp HHHHHHHHCCT----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT-BT
T ss_pred HHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 99999999864 222221455777778888889999999999999999888755555555444433
No 210
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.10 E-value=0.14 Score=49.67 Aligned_cols=243 Identities=14% Similarity=0.099 Sum_probs=133.5
Q ss_pred HHhCChHHHHHHHHHHhccC----CCchHHHHHHHhhh-hhccCCC-ChhHHHHhhhhhhhhhhhHHHHHHHhhcCC--C
Q 012265 42 QLLGNTQEAFGAYTDIIKRN----LADESSFAVAVNNL-VALKGPK-DVNDSLKKLDRIKEKDMQNFQLARVLDLRL--S 113 (467)
Q Consensus 42 ~~~G~~~eA~~~y~~~l~~~----p~d~~~~~va~nnl-~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL--~ 113 (467)
..+|+++-|...|.++-... |+....+....-|+ ..+-... ++.++..-+.+..+-. ......+..- .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l----~~~~~~~~~~~~~ 79 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL----EKPGKMDKLSPDG 79 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH----HhhhhccccCCcH
Confidence 47899999999998885543 32222222111111 1111123 5566666555432210 0000000000 1
Q ss_pred HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 114 PKQREAIYANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
...+..+....+..++..+. .+.|...++.+...+|+.+...++...++.+.++.+.+.+.|.+++...+-....+.
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~ 159 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHH
Confidence 12344566677888888777 456777888888899998888878888887888999999999999987541111222
Q ss_pred HHHHHH-HHHcCChHHHHHHHhccccC--CCChh-HH--HHHHHHHHHcC--C------HHHHHHHHHHHHHHHHHhcc-
Q 012265 191 LARAQV-AAAANHPFIAAESLAKIPDI--QHMPA-TV--ATLVALKERAG--D------IDGAAAVLDSAIKWWLNAMT- 255 (467)
Q Consensus 191 l~Laql-~~~~g~~~~A~~~L~~~~~~--~~~p~-~~--~~l~~ly~~~g--~------~~~A~~~l~~al~~~~~~~~- 255 (467)
..+..+ .+.......|...+..++-. .+.++ +. ..+..++...+ + .+....++............
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 333333 12345567788888777632 22332 22 12223333322 2 22233333322211111000
Q ss_pred -CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265 256 -EDNKLSVIMQEAASFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 256 -~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll 288 (467)
.-.....++...|.-....++|++|...|+-++
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 001233455556888999999999999999776
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.10 E-value=0.0017 Score=65.68 Aligned_cols=68 Identities=7% Similarity=-0.080 Sum_probs=60.1
Q ss_pred hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCC-hh---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 181 KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHM-PA---TVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 181 ~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.+|++... ++.+|.+|...|+|++|+.+|+++++++++ +. .++.++.+|..+|++++|+..|++|+..
T Consensus 70 ~dP~~a~a-~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAED-AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46888776 499999999999999999999999998774 32 4789999999999999999999999985
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.08 E-value=0.0056 Score=51.33 Aligned_cols=92 Identities=23% Similarity=0.180 Sum_probs=71.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C--hhHHHHHHHHHH
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M--PATVATLVALKE 231 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~--p~~~~~l~~ly~ 231 (467)
+++-.+...|+.+.|++.+.+++...|+...+ +...||.|.-+|+.++|+.-|++++++.. . -..+...+.+|.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSa-yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASA-YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHh-hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 44555567788888888888888888888765 47888999889999999999998887542 1 123445688999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 012265 232 RAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 232 ~~g~~~~A~~~l~~al~~ 249 (467)
.+|+.+.|..-|+.|...
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 999999999999887754
No 213
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.06 E-value=0.011 Score=63.91 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=90.5
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA 241 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~ 241 (467)
+..+++.+|++.+.++++++|+..-+ ...-|-++++.|++++|..+|+..-.... +...+..+..+|..+|++++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45789999999999999999998654 46778899999999999999988765433 44567789999999999999999
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+|+.++..|+. ..++..+-..|.+-+.|.+-...=-++.+..|.
T Consensus 99 ~Ye~~~~~~P~--------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 99 LYERANQKYPS--------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHHHhhCCc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999986521 123333445566766665433333333334554
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.011 Score=55.39 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=102.1
Q ss_pred hHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265 25 DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL 104 (467)
Q Consensus 25 e~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 104 (467)
+-+.-+..+..-++.+++-+|.+.-.+..|.++++.+|.....+.-.... ++. +.++...+-..+++..
T Consensus 171 lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr-~~M-Q~GD~k~a~~yf~~ve--------- 239 (366)
T KOG2796|consen 171 LWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR-ISM-QIGDIKTAEKYFQDVE--------- 239 (366)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH-HHH-hcccHHHHHHHHHHHH---------
Confidence 33444566777788899999999999999999999885433333212111 111 2334444444443221
Q ss_pred HHHhhcCCCHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265 105 ARVLDLRLSPKQR-EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 183 (467)
Q Consensus 105 ~~~l~~kL~~~q~-~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P 183 (467)
....+|..-|. ..+..|.+.+++-++++..|...+.+++..+|.++.+.-.+|.++.-.|+..+|++.++.++.+.|
T Consensus 240 --k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 240 --KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred --HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 11123332233 345778899999999999999999999999999988888888888888999999999999988888
Q ss_pred Cc
Q 012265 184 DK 185 (467)
Q Consensus 184 ~~ 185 (467)
..
T Consensus 318 ~~ 319 (366)
T KOG2796|consen 318 RH 319 (366)
T ss_pred cc
Confidence 63
No 215
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.014 Score=59.00 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=106.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc---CCC--Chh-----HHHHH
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD---IQH--MPA-----TVATL 226 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~---~~~--~p~-----~~~~l 226 (467)
..+..|++..+..-+....+.+....-+.+..+ +..+|++...|++..|...|...-- -.+ .|. ++..|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l-~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMAL-LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHH-HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 344445566666666666666666655666655 7889999999999999999987631 011 222 34678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH-HHHH---h-cc------CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-CCH
Q 012265 227 VALKERAGDIDGAAAVLDSAIK-WWLN---A-MT------EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSI 294 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~-~~~~---~-~~------~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-pd~ 294 (467)
+-++.++|.+..+.-+|.+|+. ...+ . .+ .....-.++..+|..++..|++-.|...|.+++..+ .++
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 8899999999999999999995 2221 1 00 011223467789999999999999999999999987 567
Q ss_pred HHHHHHHHHhc
Q 012265 295 EALVGLVTTSA 305 (467)
Q Consensus 295 ~ala~Lv~a~~ 305 (467)
..|.+|.-|..
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
Confidence 78888877653
No 216
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.01 E-value=0.0044 Score=60.05 Aligned_cols=95 Identities=9% Similarity=-0.040 Sum_probs=70.0
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF 270 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~ 270 (467)
-.|.-|+.||+|++|+.+|.+.+.+.+ +|-+....+..|.++.++..|..-.+.|+...+ .+..++.+-+..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-------~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-------LYVKAYSRRMQA 174 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-------HHHHHHHHHHHH
Confidence 346778888888888888888887765 777777778888888888888777777776532 222334344666
Q ss_pred HHHCCChhHHHHHHHHHHHhcCC
Q 012265 271 KLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 271 ~l~~g~~~~A~~~le~ll~~~pd 293 (467)
-..+|...+|.+-++.+|++.|+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcc
Confidence 67788888888888888888875
No 217
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.97 E-value=0.051 Score=53.92 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=104.9
Q ss_pred HHHhccccCCCCchHHHHHHHHHHhcCC------------hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265 140 LVAALPDMFPDSVMPLLLQAAVLVRENK------------AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 207 (467)
Q Consensus 140 ~~~~l~~~~P~~~~~~ll~a~l~~~~~~------------~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~ 207 (467)
.+++.++.+|.++.+++-.+......-. .+.-+.+|+++++.+|++...+ +.+-.++.+....++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~-l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLL-LGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhCCHHHHH
Confidence 4566677899999887755543321111 2345789999999999887643 66667777777888888
Q ss_pred HHHhccccCCC-ChhHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhccC-----------CchHHHHHHHHHHHHH
Q 012265 208 ESLAKIPDIQH-MPATVATLVALKER---AGDIDGAAAVLDSAIKWWLNAMTE-----------DNKLSVIMQEAASFKL 272 (467)
Q Consensus 208 ~~L~~~~~~~~-~p~~~~~l~~ly~~---~g~~~~A~~~l~~al~~~~~~~~~-----------~~~~~~ll~~la~~~l 272 (467)
..+++++...+ ++.+|......... .-.++.....|.+++........+ ...+..++..++.|+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 88888876543 66776544333332 225678888888888765443221 1234556777899999
Q ss_pred HCCChhHHHHHHHHHHHhc
Q 012265 273 RHGREEDASHLFEELVKTH 291 (467)
Q Consensus 273 ~~g~~~~A~~~le~ll~~~ 291 (467)
+.|..+.|+.+++.+++.+
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFN 184 (321)
T ss_pred HCCchHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 218
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.97 E-value=0.15 Score=55.50 Aligned_cols=243 Identities=19% Similarity=0.109 Sum_probs=145.3
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC-------chHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHH
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA-------DESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNF 102 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~-------d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~ 102 (467)
-....++.|+..+-+++++||..+..++...-+. +.-.-+.+..+++.+++ .++..+.+........
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~-~~~e~a~~lar~al~~----- 487 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNR-GDPEEAEDLARLALVQ----- 487 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh-----
Confidence 3344567899999999999999999998776442 11111223345555544 3334444333322111
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC---chHHHHHHHHHHhcCChhHHHH---
Q 012265 103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPDS---VMPLLLQAAVLVRENKAGKAEE--- 173 (467)
Q Consensus 103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~---~~~~ll~a~l~~~~~~~~~A~~--- 173 (467)
+ .......+.++..+.+.+..-.|++++|........+. +-.. ..+.+..+.++..+|+...|+.
T Consensus 488 -----L-~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~ 561 (894)
T COG2909 488 -----L-PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKA 561 (894)
T ss_pred -----c-ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 12233456677888899999999999999777755433 2221 2234456777888885544432
Q ss_pred ---HHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC----CCh----hHHHHHHHHHHHcCCHHHHHHH
Q 012265 174 ---LLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ----HMP----ATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 174 ---~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~~p----~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
+..+.+...|-+.-. ....++++...-+++.+.......+++. +.+ .....|+.++...|+.++|...
T Consensus 562 ~~~~~~q~l~q~~~~~f~-~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 562 FNLIREQHLEQKPRHEFL-VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHhhhcccchhH-HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222334444544333 3566777766666888777777666432 122 1234788999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHH-HHHHHCCChhHHHHHHHH
Q 012265 243 LDSAIKWWLNAMTEDNKLSVIMQEAA-SFKLRHGREEDASHLFEE 286 (467)
Q Consensus 243 l~~al~~~~~~~~~~~~~~~ll~~la-~~~l~~g~~~~A~~~le~ 286 (467)
+........+.. ....+........ .+.+..|++++|...+.+
T Consensus 641 l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 641 LDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 998877664432 1222222222112 223668999999888777
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.97 E-value=0.046 Score=54.08 Aligned_cols=182 Identities=19% Similarity=0.067 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH--HHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV--LVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l--~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
...|..-|++-.+...+..|+++.|++.|+.++. +|+...+- +.+.. ..+.|..+-|..+-+.+..+-|.-.-..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllG-LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~- 191 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLG-LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAA- 191 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHh-HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHH-
Confidence 4456777888888889999999999999998874 66543321 11111 1368888889988888888888865544
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCC-CChh-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQ-HMPA-------TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV 262 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~-------~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ 262 (467)
...-.-.+..|+++.|+.++..-.... ..+. ++.+--..-.-.-+...|...-.+++..- ++....
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~------pdlvPa 265 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA------PDLVPA 265 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CccchH
Confidence 444455678899999999988664321 1111 11111111111234555555544544431 112222
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012265 263 IMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTS 304 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~ 304 (467)
.+. .+..|++.|+..++..+++.+.+.+|+++....++.+-
T Consensus 266 av~-AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar 306 (531)
T COG3898 266 AVV-AARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRAR 306 (531)
T ss_pred HHH-HHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhc
Confidence 333 58889999999999999999999999886666665554
No 220
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.93 E-value=0.0018 Score=40.81 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 64 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d 64 (467)
.++..+|.++..+|++++|+..|++++..+|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999975
No 221
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.92 E-value=0.034 Score=59.67 Aligned_cols=186 Identities=16% Similarity=0.083 Sum_probs=125.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 202 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~ 202 (467)
..+.|....|-+++|..++.+-.. +-++-.+|...|.|++|.++-+.-=..|=.+ -++..|+-+...++
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~---Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRN---TYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehhh---hHHHHHHHHHhhcc
Confidence 457777788888888888776543 1123345667888888887655322222112 24677888888899
Q ss_pred hHHHHHHHhcccc-------------------C--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------
Q 012265 203 PFIAAESLAKIPD-------------------I--QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM------- 254 (467)
Q Consensus 203 ~~~A~~~L~~~~~-------------------~--~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~------- 254 (467)
.+.|++.|++... + ..++.++...+..+...|+.+.|+.+|..|-.||....
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 9999999998731 0 12456677778888899999999999999988875411
Q ss_pred -------c-CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC--------C-HHHHHHHHHHhccCChhHHHHHHh
Q 012265 255 -------T-EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG--------S-IEALVGLVTTSAHVDVDKAESYEK 317 (467)
Q Consensus 255 -------~-~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p--------d-~~ala~Lv~a~~~~d~~kA~~l~~ 317 (467)
. ...+. .+-..+|..|...|+..+|+..|.++....+ | .+-+++|.+.....|+-.|..|-+
T Consensus 954 ~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 954 TDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE 1032 (1416)
T ss_pred chHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 0 11122 2344478999999999999999888765432 2 356777777777777655555555
Q ss_pred cCC
Q 012265 318 RLK 320 (467)
Q Consensus 318 ~L~ 320 (467)
.++
T Consensus 1033 e~g 1035 (1416)
T KOG3617|consen 1033 ELG 1035 (1416)
T ss_pred Hcc
Confidence 554
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.88 E-value=0.018 Score=60.25 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=107.1
Q ss_pred HcCCHHHHHHHHHhccccCCCC--chHHH-HHHH---H--H--H--hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 130 HANKMDQARELVAALPDMFPDS--VMPLL-LQAA---V--L--V--RENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 130 ~~~~~~~A~~~~~~l~~~~P~~--~~~~l-l~a~---l--~--~--~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
..|+.+.+.+.+....+ .++- +.+.+ +.+. + . . .....+.|.++|.....++|+..-. .+..|+++
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf-l~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF-LFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHH
Confidence 56888888888887665 3332 12211 1110 0 0 1 3556678999999999999998754 48889999
Q ss_pred HHcCChHHHHHHHhccccCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhccCCchHHHHHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGAAAVLDSAIKW--WLNAMTEDNKLSVIMQEAASF 270 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~--~~~~~~~~~~~~~ll~~la~~ 270 (467)
..+|+.++|+..|+++++... .--.+..++..+.-++++++|...+...... |. ..+ .....|.+
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~--Y~Y~~a~c 349 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAF--YAYLAAAC 349 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHH--HHHHHHHH
Confidence 999999999999998875332 1123557888999999999999999988753 21 122 22335888
Q ss_pred HHHCCCh-------hHHHHHHHHHHHh
Q 012265 271 KLRHGRE-------EDASHLFEELVKT 290 (467)
Q Consensus 271 ~l~~g~~-------~~A~~~le~ll~~ 290 (467)
+...|+. ++|..+|.++-..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999 7777777776643
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.096 Score=50.22 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH--HHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA--QVA 197 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La--ql~ 197 (467)
..+..+.-.+..|++.+|...|..++...|++..+.+..|..++..|+.+.|..+|..+-....++. .+...+ .++
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~--~~~l~a~i~ll 213 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA--AHGLQAQIELL 213 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH--HHHHHHHHHHH
Confidence 4566788888999999999999999999999999999999999999999999888876543333321 112222 333
Q ss_pred HHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.+.....+....-.++-....+......++..|...|+.++|...|-..+..
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3433333332222222221126677778999999999999998887766654
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.026 Score=52.98 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc-------CCCChhHHHHHHHH
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD-------IQHMPATVATLVAL 229 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~-------~~~~p~~~~~l~~l 229 (467)
..+..+.-.|.|.-...++.++++.+|+....+.-.|+.+.++.|+.+.|...++.+.. +.+.--+....+.+
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 33444556677777777777777777543334446777788888888877777775532 22233344556677
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 230 KERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 230 y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
|..++++.+|...+.+.+... +........-|.+++-.|+..+|++.++.++...|.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred eecccchHHHHHHHhhccccC-------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 777777777777776665431 111112233456666777888888888888877764
No 225
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.69 E-value=0.0033 Score=39.73 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLAD 64 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d 64 (467)
-+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999964
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.062 Score=46.48 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKA-EELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A-~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
..+......+..+.+...+.+++..+.+....-+. ...|-.. ...+.... ... ...++..+...|
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~~------~~~-~~~l~~~~~~~~ 76 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLRELY------LDA-LERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHHH------HHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHHH------HHH-HHHHHHHHHhcc
Confidence 34555566777788888888777766443221100 0111111 11111111 112 245666667777
Q ss_pred ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 202 HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
++++|+..+++++..++ +..++..+..+|..+|+..+|+.+|++....+.
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 77777777777776554 455666677777777777777777776655554
No 227
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.58 E-value=0.0027 Score=40.45 Aligned_cols=32 Identities=13% Similarity=-0.045 Sum_probs=27.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265 175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 207 (467)
Q Consensus 175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~ 207 (467)
|+++++.+|++..+. +.||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~-~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAY-NNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHH-HHHHHHHHHCcCHHhhc
Confidence 678899999998764 89999999999999986
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.19 Score=46.98 Aligned_cols=175 Identities=15% Similarity=0.050 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..+.+-|..|....+++.|...+.++.+-..++...++ +-+.++++.- ++..+ ++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-----------------AAKayEqaam-------Lake~-~k 86 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-----------------AAKAYEQAAM-------LAKEL-SK 86 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-----------------HHHHHHHHHH-------HHHHH-HH
Confidence 44566677777788888888877777755443333332 2222221100 00001 11
Q ss_pred CCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH---
Q 012265 112 LSPKQREAIYANR-VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--- 187 (467)
Q Consensus 112 L~~~q~~~l~~n~-all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--- 187 (467)
++ ..+-++++ +.+|+..|..+-|...+++ |.-.+...++++|+++|++.+...-++..
T Consensus 87 ls---Evvdl~eKAs~lY~E~GspdtAAmaleK---------------Aak~lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 87 LS---EVVDLYEKASELYVECGSPDTAAMALEK---------------AAKALENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred hH---HHHHHHHHHHHHHHHhCCcchHHHHHHH---------------HHHHhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 11 12223343 4567777877777665554 33445677888888888887765432211
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHhcccc----CCC--Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 188 --IILLARAQVAAAANHPFIAAESLAKIPD----IQH--MPA-TVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 188 --~~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~--~p~-~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.+.-..+.+|.+..+|++|...+.+-.. ... .+. .+...+.+|+-.+++..|...++.-.++
T Consensus 149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 1224567788899999999888877642 121 221 1333455566667999999998876543
No 229
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.20 E-value=0.23 Score=43.53 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=45.5
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD 235 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~ 235 (467)
+..++.++++.+|..+--..|+.... .+.-|.+++..|++.+|+.+|+.+.+-.+ .|..-..++.++..+|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~-~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPEL-DLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 45667777777777766677777654 36677777777888888777777665333 34333444444444443
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.19 E-value=0.068 Score=45.00 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHH
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI---ILLARAQVAAA 199 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~---~~l~Laql~~~ 199 (467)
-.++.+...|+++.|++.|.+.+..-|....++-..|+.+--+|+.++|+.-|.++++...+.... .+...+-+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 357788889999999999999999999999999999999999999999999999999976543322 23566779999
Q ss_pred cCChHHHHHHHhccccCC
Q 012265 200 ANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~ 217 (467)
+|+-+.|..-|+.+.++.
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 999999999999887654
No 231
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.18 E-value=0.02 Score=55.66 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
--++.-|+.+|+|++|+.++...+..+|.++......|..|++.+++..|+.-|..++..+-....+ +-..++.-...|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA-YSRR~~AR~~Lg 179 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA-YSRRMQARESLG 179 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH-HHHHHHHHHHHh
Confidence 4568889999999999999999999999998888899999999999999999999888876444433 355677777889
Q ss_pred ChHHHHHHHhccccCCC
Q 012265 202 HPFIAAESLAKIPDIQH 218 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~~ 218 (467)
+..+|-.-++.++.+.+
T Consensus 180 ~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEP 196 (536)
T ss_pred hHHHHHHhHHHHHhhCc
Confidence 99999999999988765
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.16 E-value=0.0083 Score=37.76 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 63 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~ 63 (467)
.+++.+|.+|..+|++++|...|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998883
No 233
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.29 Score=43.35 Aligned_cols=124 Identities=13% Similarity=0.115 Sum_probs=73.3
Q ss_pred HHhcCChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHH-----HHHHHHHHHcCC
Q 012265 162 LVRENKAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATV-----ATLVALKERAGD 235 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~-----~~l~~ly~~~g~ 235 (467)
+.++++.++|+..|..+-+.. ...+..+++..+.+..+.|+...|+..|..+......|.+. ..-+.++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456667777776666655432 22333445566667777777777777777776544444332 223455556677
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
|+.....++.... +.++-.......+|...++.|++..|...|..+....
T Consensus 148 y~dV~srvepLa~------d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAG------DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccC------CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 7766665554321 1122222344456777788888888888888887643
No 234
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.09 E-value=0.21 Score=43.78 Aligned_cols=84 Identities=19% Similarity=0.112 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
.......+.+..+..+.+..++..+.-..|......++.+.+++..|+|.+|+.+|+.+.+..|..+. +.-+++..+..
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~-~kALlA~CL~~ 90 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY-AKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH-HHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999888888764 34556767766
Q ss_pred cCChH
Q 012265 200 ANHPF 204 (467)
Q Consensus 200 ~g~~~ 204 (467)
.|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 77654
No 235
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.03 E-value=0.018 Score=36.06 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 263 IMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
++..+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4566899999999999999999999999986
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.1 Score=45.14 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=37.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
..+...|++++|+..++.++..+|-+... +..+..+|..+|++.+|+.+|+++.
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~-~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALDPYDEEA-YRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT-HHH-HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34556778888888888888888877654 4677778888888888888877764
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.98 E-value=0.011 Score=36.81 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 63 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~ 63 (467)
+++++|.++..+|++++|...|+.++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4688999999999999999999999999886
No 238
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.007 Score=58.78 Aligned_cols=123 Identities=22% Similarity=0.126 Sum_probs=97.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 203 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~ 203 (467)
.+.=.+..|.++.|++.+...+.++|.+...+.-.+.++++.+++..|++-|..+++.+|+..... -..+.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y-kfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY-KFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc-chhhHHHHHhhch
Confidence 455567788899999999999999999988888888999999999999999999999999976543 4557777789999
Q ss_pred HHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 204 FIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 204 ~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
.+|...|+.+..+++.+..-..|-.+.-..+..++-...++++.
T Consensus 199 e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 99999999999888877765555555555554544444444444
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.83 E-value=0.43 Score=49.03 Aligned_cols=148 Identities=13% Similarity=0.048 Sum_probs=86.4
Q ss_pred HHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHH
Q 012265 39 YVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQRE 118 (467)
Q Consensus 39 ~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~ 118 (467)
+-.-+.-+...-+++-.++|+.+|+-...+.+++. .......++.+.+.+..+....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE-----EeA~Ti~Eae~l~rqAvkAgE~------------------ 232 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAE-----EEASTIVEAEELLRQAVKAGEA------------------ 232 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc-----ccccCHHHHHHHHHHHHHHHHH------------------
Confidence 33456778888888888899998876665544321 1223455665555543221100
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD-KSKIILLARAQVA 197 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-~~~~~~l~Laql~ 197 (467)
.+.........|..-++ ...+ ..+| ...+..-.|..+.+.|+.++|+++++++++.+|. +...++..|...+
T Consensus 233 --~lg~s~~~~~~g~~~e~--~~~R--dt~~-~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 233 --SLGKSQFLQHHGHFWEA--WHRR--DTNV-LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred --hhchhhhhhcccchhhh--hhcc--ccch-hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 00000011111111111 0000 0011 0112234566667899999999999999988886 3444778999999
Q ss_pred HHcCChHHHHHHHhccccC
Q 012265 198 AAANHPFIAAESLAKIPDI 216 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~ 216 (467)
+..+.|.++..+|.+.-++
T Consensus 306 Lelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 306 LELQAYADVQALLAKYDDI 324 (539)
T ss_pred HhcCCHHHHHHHHHHhccc
Confidence 9999999999999998654
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.83 E-value=0.025 Score=35.56 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 263 IMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+|..+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566899999999999999999999999986
No 241
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.084 Score=51.28 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL 182 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~ 182 (467)
.+++.|++-..++.|+|-.|+.-+..++..+|.+.-+++-.|..++..+++++|...++..+..+
T Consensus 119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 35778888888999999999999999999999999988888888888999999999998876654
No 242
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=4.7 Score=45.08 Aligned_cols=192 Identities=18% Similarity=0.090 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
.++...+...|+.|...+|++.+-++ .+| ..++--..+..+.|+|++-++.|.-+-++--+.- +--.|...|.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyA 1177 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHH
Confidence 46777888889999998888877654 344 3334344455678888888887775554322210 0112233444
Q ss_pred HcCChHHHHHHHhc--------ccc----CC-C--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhc-
Q 012265 199 AANHPFIAAESLAK--------IPD----IQ-H--------MPATVATLVALKERAGDIDGAAAVLDSAI--KWWLNAM- 254 (467)
Q Consensus 199 ~~g~~~~A~~~L~~--------~~~----~~-~--------~p~~~~~l~~ly~~~g~~~~A~~~l~~al--~~~~~~~- 254 (467)
+.|+..+-...+.- +.+ .. + +-.-+..|+..+...|++..|...-++|- .-|+..-
T Consensus 1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 55555543333221 000 00 0 01114456677777888888888777663 3454411
Q ss_pred ----cCC-----------chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc-CCHHHHHHHHHHhccCChhHHHHHHh
Q 012265 255 ----TED-----------NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH-GSIEALVGLVTTSAHVDVDKAESYEK 317 (467)
Q Consensus 255 ----~~~-----------~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~-pd~~ala~Lv~a~~~~d~~kA~~l~~ 317 (467)
... --...=+.++..+|...|-+++-+.+++..+... -..-....|..-|+.+.++|..+.++
T Consensus 1258 aCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred HHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 000 0001124557788889999999999999998776 23333445666777887777655443
No 243
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.55 E-value=0.2 Score=51.00 Aligned_cols=146 Identities=16% Similarity=0.076 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHH-HHhCCC---c---HH-HHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQF-AEKLPD---K---SK-IILL 191 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~-l~~~P~---~---~~-~~~l 191 (467)
++......++++.++.-|.+.+..++....++..+.++++.+++..|++.+|.++|... +..+|. . .. ....
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 34445566688888888988888888888889999999999999999999999887642 233333 1 11 1114
Q ss_pred HHHHHHHHcCChHHHHHHHhcccc---------CC----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPD---------IQ----------HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~---------~~----------~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
.|+-|+.+.|.|.-++..|.+++. +. ..-.+.+..+-+|+..|+.-.|.++|.+++..|..
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 567788888888888888887762 11 12346678899999999999999999999988854
Q ss_pred hccCCchHHHHHHHHHHHHH
Q 012265 253 AMTEDNKLSVIMQEAASFKL 272 (467)
Q Consensus 253 ~~~~~~~~~~ll~~la~~~l 272 (467)
++ .+|+++|.+..
T Consensus 368 nP-------rlWLRlAEcCi 380 (696)
T KOG2471|consen 368 NP-------RLWLRLAECCI 380 (696)
T ss_pred Cc-------HHHHHHHHHHH
Confidence 32 25666776653
No 244
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.50 E-value=0.047 Score=48.61 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=44.1
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHh----------cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265 134 MDQARELVAALPDMFPDSVMPLLLQAAVLVR----------ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 202 (467)
Q Consensus 134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----------~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~ 202 (467)
|+.|++.++.....+|.+.+.+.--+..|.. ..-+++|+..|++++..+|+...++ ..+|..|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl-w~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL-WCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHHHh
Confidence 5778888888778899887765433333321 1334677888888899999988765 888888876543
No 245
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.44 E-value=1 Score=48.95 Aligned_cols=178 Identities=20% Similarity=0.190 Sum_probs=115.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhccccC--CCCchH----HHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 109 DLRLSPKQREAIYANRVLLLL-HANKMDQARELVAALPDMF--PDSVMP----LLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l-~~~~~~~A~~~~~~l~~~~--P~~~~~----~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
..+|++.+...+++..+.+++ ++.+++.|+..+++..... ++..+. .++.+.++.+.+... |...+.+.++.
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 357888899999999999988 7999999999999875433 444332 345677777777777 99999998875
Q ss_pred CCC---cHH--HHHHHHHHHHHHcCChHHHHHHHhccccCC---CChhHH--H--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 182 LPD---KSK--IILLARAQVAAAANHPFIAAESLAKIPDIQ---HMPATV--A--TLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 182 ~P~---~~~--~~~l~Laql~~~~g~~~~A~~~L~~~~~~~---~~p~~~--~--~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.-+ ... ..++..+.+++..+++..|+..|+.+.... .++.+. . .-+.+....+..++++..++.+...
T Consensus 129 ~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 129 SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 433 211 233444556666689999999999997543 244432 1 2256666778888899999888654
Q ss_pred HHHh--cc--CCchHHHHHHHHH--HHHHHCCChhHHHHHHHHHH
Q 012265 250 WLNA--MT--EDNKLSVIMQEAA--SFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 250 ~~~~--~~--~~~~~~~ll~~la--~~~l~~g~~~~A~~~le~ll 288 (467)
.... .+ ..+.+.. |..+- .+.+..|++..+...++++-
T Consensus 209 ~~~~q~~~~~~~~qL~~-~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKA-LFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HhhcccCCCCCcHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4321 00 1123322 22222 23467788777766555544
No 246
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.40 E-value=0.18 Score=39.94 Aligned_cols=68 Identities=21% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHH
Q 012265 171 AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGA 239 (467)
Q Consensus 171 A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A 239 (467)
.+..+++.++.+|++... ++.+|..++..|++++|+..|-.++..+. .-.....+..++...|.-+..
T Consensus 7 ~~~al~~~~a~~P~D~~a-r~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDA-RYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHHHHHHHSTT-HHH-HHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred cHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 356778889999999875 59999999999999999999999986543 234455666677666665433
No 247
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.37 E-value=0.13 Score=46.27 Aligned_cols=102 Identities=13% Similarity=0.017 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH-HH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS-VI 263 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-~l 263 (467)
.+..+|..|.+.|++++|+..|.++.+... .-.+...++.+....+++..+...+.++-..... +++.... .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~nrl 115 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHHHHH
Confidence 457889999999999999999999875332 3345667788888899999999999888765432 1121111 12
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
-...|..++..++|.+|...|-.+...+.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 22246777889999999999988876653
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.33 E-value=0.8 Score=46.03 Aligned_cols=129 Identities=24% Similarity=0.207 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHh-ccccCCCCchHHHHHHHHH----Hh-----cCChhHHHHHHHHHHHhCCCc
Q 012265 119 AIYANRVLLLLH---ANKMDQARELVAA-LPDMFPDSVMPLLLQAAVL----VR-----ENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 119 ~l~~n~all~l~---~~~~~~A~~~~~~-l~~~~P~~~~~~ll~a~l~----~~-----~~~~~~A~~~l~~~l~~~P~~ 185 (467)
.+.+..|+++-. .|+.+.|...+.. +....+.+.+.+-+.|.+| .. ....++|+..|.+..+..|+.
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 467788888888 8889999999998 6666666777666777766 22 223578999999999999875
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHhccc--------c---CCCChhH--HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 186 SKIILLARAQVAAAANHPFIAAESLAKIP--------D---IQHMPAT--VATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~--------~---~~~~p~~--~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
-.. ..+|-++...|+..+....++++. . ......+ +.+++.+..-.|++++|+..++++...
T Consensus 260 Y~G--IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 260 YSG--INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cch--HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 332 456667777787665555444443 1 1122333 467788888899999999999998864
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.29 E-value=0.035 Score=34.37 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPD 184 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~ 184 (467)
+..|.++...|++++|+..+++++..+|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33444444455555555555555555554
No 250
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.035 Score=51.43 Aligned_cols=84 Identities=13% Similarity=-0.040 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265 131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL 210 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L 210 (467)
..+|+.|+..+.+.+..+|....++--.|..+++.++++.+..-+.+++...|+.... ++.|++..+....|++|+.+|
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~-h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA-HYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH-HHHHHHHHHhhccccHHHHHH
Confidence 4568999999999999999998888888999999999999999999999999998765 599999999999999999999
Q ss_pred hcccc
Q 012265 211 AKIPD 215 (467)
Q Consensus 211 ~~~~~ 215 (467)
.++.+
T Consensus 102 qra~s 106 (284)
T KOG4642|consen 102 QRAYS 106 (284)
T ss_pred HHHHH
Confidence 99964
No 251
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.12 E-value=0.82 Score=39.56 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=33.5
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~ 217 (467)
...+.++++.+|..+--..|+.... .+.-+.+++..|++.+|+.+|+.+.+-.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~-d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKEL-DMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCcccc-chhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4566666666666655566666543 3556667777777777777777766543
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.94 E-value=0.9 Score=46.78 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHH
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEE 286 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ 286 (467)
+-..|+.+..+.|+.++|++.++..+..+ + . .+...+...+...++..+.|.++..++.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~---p-~-~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEF---P-N-LDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhC---C-c-cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34457777788888888888888877542 1 1 11223455677788888888888877766
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=2.1 Score=38.10 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHH-HHHHHHhcCChhHHHHHHHHHHHhCC--CcH-HHHHHHHHHH
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLL-QAAVLVRENKAGKAEELLGQFAEKLP--DKS-KIILLARAQV 196 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll-~a~l~~~~~~~~~A~~~l~~~l~~~P--~~~-~~~~l~Laql 196 (467)
|..++-+...|+.++|...|..+.+..-++.. ...+ .+.++...|+...|+..+.++....| .-. ..+++.-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 44566667789999999999999887666544 3334 45667889999999999998877554 222 2456777888
Q ss_pred HHHcCChHHHHHHHhccccC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 197 AAAANHPFIAAESLAKIPDI-QH-MPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~-~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
++..|-|++-...++.+..- .+ .....-.|+..-.+.|++.+|..+|.....
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 89999999988888877532 11 122344567777789999999999998765
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.88 E-value=0.04 Score=35.40 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
+..||.+|..+|++++|+.+|+++|..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567999999999999999999996543
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=3.1 Score=44.50 Aligned_cols=142 Identities=18% Similarity=0.093 Sum_probs=76.5
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 114 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~ 114 (467)
.|.|.|-.--|+++||+.+|-.+...+ ..+-+- . +..+.+..+..+..-- .--..
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrD---LAielr-----~---klgDwfrV~qL~r~g~--------------~d~dD 792 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRD---LAIELR-----K---KLGDWFRVYQLIRNGG--------------SDDDD 792 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhh---hhHHHH-----H---hhhhHHHHHHHHHccC--------------CCcch
Confidence 677888888899999999997665543 222110 1 1233444444432110 00112
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
.+...+..|.+-.+.....+++|.+.+..--.. --.+..|++..++++ |+.+...-|++...+ =.+|
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~ll-p~~a 859 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELL-PVMA 859 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchH-HHHH
Confidence 234445556666666666677777666643211 012223344444443 333444556665544 5667
Q ss_pred HHHHHcCChHHHHHHHhccc
Q 012265 195 QVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~ 214 (467)
+++..-|--++|++.|-+..
T Consensus 860 ~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHhhchHHHHHHHHHhcc
Confidence 77777777777777665543
No 256
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.73 E-value=0.71 Score=46.57 Aligned_cols=188 Identities=15% Similarity=0.041 Sum_probs=109.1
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhh------hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHH---Hhhh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIE------LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA---VNNL 75 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~E------l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va---~nnl 75 (467)
+..++..+..+.... .++.+..= -.+..+|++.|+..+|+.+.|.++++++|-... ..+.-.- ..|.
T Consensus 10 Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--~~~~~~F~~~~~~~ 85 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSH--DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--RAFHPSFSPFRSNL 85 (360)
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHHHHHhhhhhccc
Confidence 455666666666543 23333211 236679999999999999999999999886432 1111000 0011
Q ss_pred hhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC-CchH
Q 012265 76 VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD-SVMP 154 (467)
Q Consensus 76 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~-~~~~ 154 (467)
.. ++.---++..+ | .+.=.+.+.....+.+.|-+.-|.+.++-+...+|. ++.+
T Consensus 86 ---~~-g~~rL~~~~~e-------N--------------R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 86 ---TS-GNCRLDYRRPE-------N--------------RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred ---cc-CccccCCcccc-------c--------------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 00 00000000000 0 111234566777788889999999999999999999 6666
Q ss_pred HHHHHHHH-HhcCChhHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHcCCh---------------HHHHHHH
Q 012265 155 LLLQAAVL-VRENKAGKAEELLGQFAEK--------LPDKSKIILLARAQVAAAANHP---------------FIAAESL 210 (467)
Q Consensus 155 ~ll~a~l~-~~~~~~~~A~~~l~~~l~~--------~P~~~~~~~l~Laql~~~~g~~---------------~~A~~~L 210 (467)
.++....| ++.++++=-+.+++..... -|+- .+..|-.+...++- +.|...|
T Consensus 141 ~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~----a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L 216 (360)
T PF04910_consen 141 VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF----AFSIALAYFRLEKEESSQSSAQSGRSENSESADEAL 216 (360)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH----HHHHHHHHHHhcCccccccccccccccchhHHHHHH
Confidence 66655544 6788888777777765542 2332 24444444445555 6777777
Q ss_pred hccccCCCChhHHHHHH
Q 012265 211 AKIPDIQHMPATVATLV 227 (467)
Q Consensus 211 ~~~~~~~~~p~~~~~l~ 227 (467)
.+++.. .|.++..|.
T Consensus 217 ~~Ai~~--fP~vl~~Ll 231 (360)
T PF04910_consen 217 QKAILR--FPWVLVPLL 231 (360)
T ss_pred HHHHHH--hHHHHHHHH
Confidence 776532 455544433
No 257
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.56 E-value=0.7 Score=43.85 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=63.5
Q ss_pred HHHHHHHcCChHHHHHHHhccccCC---CChhHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHHhccCC-chHHHHH
Q 012265 193 RAQVAAAANHPFIAAESLAKIPDIQ---HMPATVATL----VALKERAGDIDGAAAVLDSAIKWWLNAMTED-NKLSVIM 264 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~~~---~~p~~~~~l----~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~ll 264 (467)
-.|+|..+.+...--.+|++.+.+. ++|-+...+ +..+++.|++++|-.-|=+|...|....... ..... +
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK-Y 275 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK-Y 275 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH-H
Confidence 3677878877777777777776543 355444332 4566777888888777767766654322110 11111 2
Q ss_pred HHHHHHHHHCC----ChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHH
Q 012265 265 QEAASFKLRHG----REEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESY 315 (467)
Q Consensus 265 ~~la~~~l~~g----~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l 315 (467)
+-+|..++..| +-++|.- .+.+|..-++.+||.+|...|.-.-+..
T Consensus 276 LVLANMLmkS~iNPFDsQEAKP-----yKNdPEIlAMTnlv~aYQ~NdI~eFE~I 325 (440)
T KOG1464|consen 276 LVLANMLMKSGINPFDSQEAKP-----YKNDPEILAMTNLVAAYQNNDIIEFERI 325 (440)
T ss_pred HHHHHHHHHcCCCCCcccccCC-----CCCCHHHHHHHHHHHHHhcccHHHHHHH
Confidence 22567777665 2223321 1112334455667777766665444433
No 258
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.53 E-value=0.093 Score=32.78 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 263 IMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
++..+|.++...|++++|...|+++++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3555899999999999999999999998874
No 259
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.49 E-value=0.024 Score=36.02 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHhccccCCCCchHHHHHHHHHHhcCChhHHH
Q 012265 141 VAALPDMFPDSVMPLLLQAAVLVRENKAGKAE 172 (467)
Q Consensus 141 ~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~ 172 (467)
++++++.+|++..++...|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56778889999999999999999999999986
No 260
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.48 E-value=0.12 Score=46.15 Aligned_cols=98 Identities=13% Similarity=-0.012 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 168 AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 168 ~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
++.|.+.++.....+|.+.+.+ +.-|-.++...++.. -++.. .-+++|+.-|++|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL-~~WG~ALLELAqfk~-------------g~es~----------~miedAisK~eeAL 62 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNL-TNWGGALLELAQFKQ-------------GPESK----------KMIEDAISKFEEAL 62 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHH-HHHHHHHHHHHHHS--------------HHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHH-HHHHHHHHHHHhccC-------------cchHH----------HHHHHHHHHHHHHH
Confidence 5677788888888888887654 333443333222111 00100 11345555666666
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHCCC-----------hhHHHHHHHHHHHhcCCHHH
Q 012265 248 KWWLNAMTEDNKLSVIMQEAASFKLRHGR-----------EEDASHLFEELVKTHGSIEA 296 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~ll~~la~~~l~~g~-----------~~~A~~~le~ll~~~pd~~a 296 (467)
... |.....+..+|..|..++. +++|...|++++..+|+.+.
T Consensus 63 ~I~-------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 63 KIN-------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HH--------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred hcC-------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 542 2222334446777765543 56888899999999987544
No 261
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=3.1 Score=42.72 Aligned_cols=169 Identities=14% Similarity=0.081 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---ccCCCCc-------hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cHH-
Q 012265 120 IYANRVLLLLHANKMDQARELVAALP---DMFPDSV-------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPD-KSK- 187 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~---~~~P~~~-------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-~~~- 187 (467)
+.-+...+.+-.|++..|++.+..+. ..+|.-. ....+.+.-...-+.+++|+..+..+.+.-.. +..
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 44566777888999999988777655 4566521 12234444345678889999988888776432 221
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc-
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDIQH--------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN- 258 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~- 258 (467)
.+.+.+|-+|+++|+-+.--++++.+..... ..++....+.+...+|++.+|...+.+.+.-- + .+|.
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-n--aed~~ 481 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-N--AEDLN 481 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-c--hhhHH
Confidence 2346789999999999988888888864321 12344455666667899999999999887642 1 1111
Q ss_pred hH-HHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 259 KL-SVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 259 ~~-~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+ .--+.-++.+.+..|+..++.+...-++...
T Consensus 482 rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 482 RLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 11 1112235777788899999999888887765
No 262
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.38 E-value=0.99 Score=45.52 Aligned_cols=132 Identities=15% Similarity=0.015 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc--------cc------------------CCCCchH---HHHHHHHHHhcCChhHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALP--------DM------------------FPDSVMP---LLLQAAVLVRENKAGKA 171 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~--------~~------------------~P~~~~~---~ll~a~l~~~~~~~~~A 171 (467)
++..+.++.++|+.+.|.+++++++ .. .+.|... .+-....+.+.|-+.-|
T Consensus 43 Llqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTA 122 (360)
T PF04910_consen 43 LLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTA 122 (360)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHH
Confidence 3455666677777776666666543 11 2333332 22334556789999999
Q ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHHcCChHHHHHHHhcccc------CCCChhHHHHHHHHHHHcCCH--------
Q 012265 172 EELLGQFAEKLPD-KSKIILLARAQVAAAANHPFIAAESLAKIPD------IQHMPATVATLVALKERAGDI-------- 236 (467)
Q Consensus 172 ~~~l~~~l~~~P~-~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~g~~-------- 236 (467)
.+.++-++..+|+ |+-.+++.+=.+.++.++|+--+..++.... ....|++...++..+...++.
T Consensus 123 lE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~ 202 (360)
T PF04910_consen 123 LEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQ 202 (360)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccc
Confidence 9999999999999 7776767777777899999988888887654 223577777777777777777
Q ss_pred -------HHHHHHHHHHHHHHHH
Q 012265 237 -------DGAAAVLDSAIKWWLN 252 (467)
Q Consensus 237 -------~~A~~~l~~al~~~~~ 252 (467)
+.|...|.+|+..++.
T Consensus 203 ~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 203 SGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred cccccchhHHHHHHHHHHHHhHH
Confidence 8999999999987753
No 263
>PRK10941 hypothetical protein; Provisional
Probab=94.27 E-value=0.32 Score=46.84 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
.|.-.+++..++++.|.++++.++...|+++.-+.=.|.+|.+.|.+..|..-|+.+++..|+++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4445556666666666666666666666666555556666666666666666666666666666543
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.23 E-value=0.099 Score=33.52 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
+..+|.++...|++++|+.+|++++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4458999999999999999999977543
No 265
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.22 E-value=0.53 Score=40.71 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
......+.+..+.++.+..++..+.-..|+.....++.+-+++..|+|.+|+.+|+.+.+..+..+- .+-+++..+...
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~-~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY-GKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH-HHHHHHHHHHhc
Confidence 3455666777999999999999999999999999999999999999999999999999887766542 334455555555
Q ss_pred CC
Q 012265 201 NH 202 (467)
Q Consensus 201 g~ 202 (467)
|+
T Consensus 92 ~D 93 (153)
T TIGR02561 92 GD 93 (153)
T ss_pred CC
Confidence 54
No 266
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.15 E-value=0.41 Score=44.50 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc------CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 221 ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT------EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 221 ~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~------~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+...++.+|..+|+.+.....+++|+.+|..... ..-.-..++..+|.+..+.|++++|...|.+++...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45667899999999988888888888888765321 111112345557999999999999999999999765
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.73 Score=45.04 Aligned_cols=159 Identities=12% Similarity=0.043 Sum_probs=95.2
Q ss_pred HHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC-ChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265 38 AYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK-DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 116 (467)
Q Consensus 38 A~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q 116 (467)
+.++.-.|++-+|....+++|...|.|.-..-.. ......++.. ....+++++ .+. .. .-+. -
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfs-h~a~fy~G~~~~~k~ai~kI---ip~------wn----~dlp--~ 173 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFS-HDAHFYNGNQIGKKNAIEKI---IPK------WN----ADLP--C 173 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhh-hhHHHhccchhhhhhHHHHh---ccc------cC----CCCc--H
Confidence 4566778899999999999999888775433211 1111111111 111222222 111 00 0010 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILL 191 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~~~l 191 (467)
..-+.-..+.-+...|-+++|.+..++.+..+|.+-.+....+.++...++.+++.+...+--..--.. ... -
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy--W 251 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY--W 251 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh--H
Confidence 112233345566778889999999999999999888888888888888999999887766432111000 011 2
Q ss_pred HHHHHHHHcCChHHHHHHHhccc
Q 012265 192 ARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
.-|-.|++-+.|+.|+.+|..-+
T Consensus 252 H~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHHH
Confidence 33556777889999999887653
No 268
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.92 E-value=5.4 Score=41.64 Aligned_cols=131 Identities=10% Similarity=0.102 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH-HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV-LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l-~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
++.+........--+..|+.+|.++.+.--....+.+..|.+ |.-.++..-|.++++--+..+++++..+ +.....++
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv-~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYV-LKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHH-HHHHHHHH
Confidence 344444444555568889999998875432222333333322 4578999999999999999999998765 77888888
Q ss_pred HcCChHHHHHHHhccccC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 199 AANHPFIAAESLAKIPDI--QH--MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~--~~--~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
..|+-..|..+|++++.. .. .-.+|......-..-|+...++++-++-...++
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999999999999864 11 224565555666667888877777666554443
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.82 E-value=7.6 Score=38.45 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
...+-.|......|+++++..+.+++...
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQL 58 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 34466777778999999999998887654
No 270
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.77 E-value=5.8 Score=38.69 Aligned_cols=102 Identities=19% Similarity=0.082 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhcccc-C-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPD-I-------QHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN 258 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~-~-------~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~ 258 (467)
..+++.||.+|...++|..|.++|..+.. . .....+...++.+|+..++..+|..+..++.-.... ..++
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~--~~Ne 180 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE--SSNE 180 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc--ccCH
Confidence 35679999999999999999999998852 1 113344567899999999999999999887533211 1223
Q ss_pred hHHHHHHH--HHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 259 KLSVIMQE--AASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 259 ~~~~ll~~--la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+. +... .|.++-..+++=+|...|-++....
T Consensus 181 ~Lq-ie~kvc~ARvlD~krkFlEAAqrYyels~~k 214 (399)
T KOG1497|consen 181 QLQ-IEYKVCYARVLDYKRKFLEAAQRYYELSQRK 214 (399)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1111 2566667788888888887777654
No 271
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.65 E-value=0.23 Score=39.31 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=47.3
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHcCChHH
Q 012265 139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-SKIILLARAQVAAAANHPFI 205 (467)
Q Consensus 139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-~~~~~l~Laql~~~~g~~~~ 205 (467)
..++..+..+|++..+.+-.|..++..|++++|+..|..++..+++. ....+-.|..++-..|.-+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 44666677899999999999999999999999999999999988764 12334556666655555443
No 272
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.57 E-value=1.4 Score=36.57 Aligned_cols=99 Identities=19% Similarity=0.100 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCC--------C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQ--------H-----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT-- 255 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~--------~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-- 255 (467)
|.-++-.+..|-|++|...+.++.++. + +.-.+..|...+...|++++++..-+.++.++..+..
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 444666677788888888888876421 1 1123567888899999999999999999988855432
Q ss_pred CCch--HHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 256 EDNK--LSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 256 ~~~~--~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
.+.. .....+.-|..+...|+.++|+..|+.+.+
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1211 122233346667889999999999988765
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.53 E-value=1.4 Score=43.61 Aligned_cols=151 Identities=17% Similarity=-0.004 Sum_probs=98.8
Q ss_pred HHhcCChhHHHHHHHHHHHh---CC-CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHHHHH
Q 012265 162 LVRENKAGKAEELLGQFAEK---LP-DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLVALK 230 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~---~P-~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~ly 230 (467)
+.+.-++.+++.+..-.+.. .| .....+.+.++..++..+.++++++.|+++..+.+ + ..+...|+.+|
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 33444455566555444432 22 23334568899999999999999999999975422 1 23456789999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccCCch---HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CCHHHHH--HHHH
Q 012265 231 ERAGDIDGAAAVLDSAIKWWLNAMTEDNK---LSVIMQEAASFKLRHGREEDASHLFEELVKTH---GSIEALV--GLVT 302 (467)
Q Consensus 231 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~---~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd~~ala--~Lv~ 302 (467)
.+..|+++|.-+..+|.+.-....-++-. ....+..++-.+-..|+.-.|.+..+++.++. .|....+ -++.
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 99999999999999998765443322211 12234456777778899999999999988764 5532222 2222
Q ss_pred H--h-ccCChhHH
Q 012265 303 T--S-AHVDVDKA 312 (467)
Q Consensus 303 a--~-~~~d~~kA 312 (467)
+ | +..|++.|
T Consensus 253 aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 253 ADIYRSRGDLERA 265 (518)
T ss_pred HHHHHhcccHhHH
Confidence 2 3 45666665
No 274
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.39 E-value=0.11 Score=52.99 Aligned_cols=102 Identities=18% Similarity=0.102 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
.-+.+--.+..+.|+.|..++.+++.++|+.....-..+..+++.+.+..|+.-+.++++..|..... ++..|..++..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~-Y~rrg~a~m~l 85 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKA-YVRRGTAVMAL 85 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhhe-eeeccHHHHhH
Confidence 34677788888999999999999999999988887788888899999999999999999999988764 47788999999
Q ss_pred CChHHHHHHHhccccCCC-ChhHH
Q 012265 201 NHPFIAAESLAKIPDIQH-MPATV 223 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~-~p~~~ 223 (467)
+++.+|...|++...+.+ .+.+.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHH
Confidence 999999999999887765 55443
No 275
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.33 E-value=0.17 Score=29.95 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA 63 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~ 63 (467)
++..+|.++..+|++++|...|+.+++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4678999999999999999999999988775
No 276
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.19 E-value=10 Score=42.00 Aligned_cols=196 Identities=16% Similarity=0.084 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----HHHHHHHHHHhcCChhHHHHHHHHHHHh---CCCc--HHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVM-----PLLLQAAVLVRENKAGKAEELLGQFAEK---LPDK--SKIIL 190 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----~~ll~a~l~~~~~~~~~A~~~l~~~l~~---~P~~--~~~~~ 190 (467)
.--.+.+.++.|+++.|.+..+.++..-|.+.. +....+.+..-.|++++|..+.+.+.+. +-.. .....
T Consensus 461 ~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 461 QALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 344688999999999999999988777665433 2335566677899999999888876654 2111 11123
Q ss_pred HHHHHHHHHcCChH--HHHHHHhcccc----CCCChhH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 012265 191 LARAQVAAAANHPF--IAAESLAKIPD----IQHMPAT-VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI 263 (467)
Q Consensus 191 l~Laql~~~~g~~~--~A~~~L~~~~~----~~~~p~~-~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~l 263 (467)
+.-+.++..+|+.. +....+..+-. ..+..++ +...+.++...-+++.+.......+.+-....+........
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~ 620 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLA 620 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHH
Confidence 55678889999433 33333333321 1112111 22223333333337777666666554422111111111112
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHhc--C--CHHH-----HHHHHHHhccCChhHHHHHH
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKTH--G--SIEA-----LVGLVTTSAHVDVDKAESYE 316 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~~--p--d~~a-----la~Lv~a~~~~d~~kA~~l~ 316 (467)
+..++.+....|++++|...+.++.... + +.+. .+.+++-..+.|.+.+....
T Consensus 621 ~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 621 LSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWL 682 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence 2246888899999999999988887654 2 2222 33445555788876665443
No 277
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.34 Score=45.13 Aligned_cols=92 Identities=13% Similarity=-0.032 Sum_probs=75.6
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh-hHHHHHHHHHHHcCCHHHHH
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMP-ATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p-~~~~~l~~ly~~~g~~~~A~ 240 (467)
+...++|..|+..|.+++..+|....+. ...|..|++.++++.+..--.+++++.++. -..+-++...++...+++|+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~-tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYY-TNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhh-hhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 4456788999999999999999986654 677889999999999999988888876532 23556788888999999999
Q ss_pred HHHHHHHHHHHHhc
Q 012265 241 AVLDSAIKWWLNAM 254 (467)
Q Consensus 241 ~~l~~al~~~~~~~ 254 (467)
.+|.+|.+.++..+
T Consensus 99 ~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 99 KVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999988776543
No 278
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.08 E-value=3.2 Score=43.07 Aligned_cols=131 Identities=17% Similarity=0.113 Sum_probs=71.6
Q ss_pred HHHHHHcCCHHHHHHHHH--hccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265 125 VLLLLHANKMDQARELVA--ALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 202 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~--~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~ 202 (467)
..+.+..++++.+.+.++ +++..-|.+. ..-.+.-+.+.|-++.|+.+.. |+. ....+.++.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~--~~~i~~fL~~~G~~e~AL~~~~--------D~~----~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQ--GQSIARFLEKKGYPELALQFVT--------DPD----HRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHH--HHHHHHHHHHTT-HHHHHHHSS---------HH----HHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhH--HHHHHHHHHHCCCHHHHHhhcC--------ChH----HHhHHHHhcCC
Confidence 445556677888666554 3333333111 1222334456777777776542 222 23456678888
Q ss_pred hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHH
Q 012265 203 PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH 282 (467)
Q Consensus 203 ~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~ 282 (467)
++.|.++...+- ++..|..|+.+.+.+|+++-|..+|.++-.+ ..+..+|...|+.+.-..
T Consensus 334 L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---------------~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 334 LDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKAKDF---------------SGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H---------------HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc---------------cccHHHHHHhCCHHHHHH
Confidence 888888776654 5677888888888888888888888765332 113445667777655555
Q ss_pred HHHHHH
Q 012265 283 LFEELV 288 (467)
Q Consensus 283 ~le~ll 288 (467)
+.+.+.
T Consensus 395 l~~~a~ 400 (443)
T PF04053_consen 395 LAKIAE 400 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 279
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=12 Score=38.72 Aligned_cols=135 Identities=15% Similarity=0.024 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-CCCchH--HHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----H
Q 012265 115 KQREAIYANRVLLLLHANKMDQARELVAALPDMF-PDSVMP--LLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----S 186 (467)
Q Consensus 115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-P~~~~~--~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~ 186 (467)
.....+++-.++-....|.++.|...|..+.+.- -.+..+ .+..|-.|++.++.+.-.++++.+ .|.+ .
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ss 440 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSS 440 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchH
Confidence 3344566666766677788999988877665433 333333 345667788877766544444432 3331 1
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 187 ----KIILLARAQVAAAANHPFIAAESLAKIPDIQHMP-------ATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 187 ----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p-------~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
..+.+..|-....+|++.||...+.+.++..... ..+..|+.+....|+..++...+.-++.+-+.
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 1234667777789999999999999988643211 12346778888899999999999999987655
No 280
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.02 E-value=11 Score=40.69 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=46.5
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
.|-+.|+|.+|-++-.++. .|+....++++.|+=+-.+|+|.+|.++|-.+.+ |.. ....|.+.|.++..+
T Consensus 800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~---aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK---AIQMYDKHGLDDDMI 870 (1636)
T ss_pred HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH---HHHHHHhhCcchHHH
Confidence 3556777777776665553 3665555556677777888888888887766642 321 123455566666555
Q ss_pred HHHH
Q 012265 241 AVLD 244 (467)
Q Consensus 241 ~~l~ 244 (467)
.+.+
T Consensus 871 rlv~ 874 (1636)
T KOG3616|consen 871 RLVE 874 (1636)
T ss_pred HHHH
Confidence 5544
No 281
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.00 E-value=4.6 Score=36.89 Aligned_cols=143 Identities=15% Similarity=0.049 Sum_probs=82.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 203 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~ 203 (467)
+...+...-+|.+|++....+....-.......+.|.+.. .+.+..|.+-.+.. .++..+ -.+..+..-
T Consensus 54 ky~~l~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s-----~~~l~~L~~~tk~S-~dP~ll-----Yy~Wsr~~d 122 (203)
T PF11207_consen 54 KYQLLEALEKYSKCIELAAQIQHIKQKERKTDRFRALLHS-----YQELERLQEETKNS-QDPYLL-----YYHWSRFGD 122 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHH-----HHHHHHHHHHHccC-CCccHH-----HHHhhccCc
Confidence 3444444456777777666654322222222233333221 12333444433332 233221 133455556
Q ss_pred HHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265 204 FIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS 281 (467)
Q Consensus 204 ~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~ 281 (467)
++|...|-.+.... ..|.+...|+..|. .-+.++++.+|..+++.+.. ++.-...++..++.++...|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~---~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP---DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 77877777765432 26788888899887 46789999999999987633 21222346777899999999998874
No 282
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.76 E-value=0.15 Score=51.90 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
+.-|++++++..+.+..|..-+..+++.+|....+++..|......+.+.+|...|+......|++..+
T Consensus 40 ~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 40 YFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred eechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 455677777788888888888888888888877777788777778888888888888888888887653
No 283
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.54 E-value=8.5 Score=40.22 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCCh-h-HHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 168 AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMP-A-TVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 168 ~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p-~-~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
++.--.++.+++...-.+...++..+-..-.+..-...|..+|.++-+....+ . ++..-..=|..+++.+-|..+|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 44455666666665443333332333334445566888888888887643322 2 222222334467899999999998
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh--cCC--HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 246 AIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT--HGS--IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 246 al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~--~pd--~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
-+.++. +++.+ ......++...++...|..+|++++.. .++ ...+..++.-- .-.|+..+.++.++
T Consensus 427 GLkkf~----d~p~y---v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 427 GLKKFG----DSPEY---VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhcC----CChHH---HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 888763 33443 334578889999999999999999987 344 34455544332 45667777777654
No 284
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.26 E-value=2.2 Score=33.84 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=43.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 230 KERAGDIDGAAAVLDSAIKWWLNAMTED--NKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 230 y~~~g~~~~A~~~l~~al~~~~~~~~~~--~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..+.|++.+|.+.|.+...+........ ..+...+..+|.++...|++++|...+++++..-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456777777777777666543322111 1234456668999999999999999999999875
No 285
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.11 E-value=0.4 Score=33.83 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ 158 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~ 158 (467)
.|..++.++..|+++.|++.++.+++..|++..+..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 34555556666666666666666666666665554443
No 286
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.02 E-value=3.1 Score=45.17 Aligned_cols=119 Identities=14% Similarity=0.048 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHHHH-HcCChHHHHHHHhccccCCCCh-------hHHHHHHHHHHHcCCHHH
Q 012265 170 KAEELLGQFAEKL---PDKSKIILLARAQVAA-AANHPFIAAESLAKIPDIQHMP-------ATVATLVALKERAGDIDG 238 (467)
Q Consensus 170 ~A~~~l~~~l~~~---P~~~~~~~l~Laql~~-~~g~~~~A~~~L~~~~~~~~~p-------~~~~~l~~ly~~~g~~~~ 238 (467)
-|+++|+-++... |.....+++.+|.+|+ .+.+++.|...|++.+.+...+ ..-..++.+|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4556666665322 2222235677888877 6788888888888876432111 22345677887777666
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHH-HHHHHHCCChhHHHHHHHHHHHhc
Q 012265 239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEA-ASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 239 A~~~l~~al~~~~~~~~~~~~~~~ll~~l-a~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
|...++++++.+.... .......++-+ +.+++..+++..|.+.++.+....
T Consensus 118 a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 8888888887764411 12222223222 333444578888888888888765
No 287
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=1.6 Score=40.98 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc--------ccCCCCchH----------HHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 120 IYANRVLLLLHANKMDQARELVAALP--------DMFPDSVMP----------LLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~--------~~~P~~~~~----------~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
+....+.-++..|++.+|...+..++ +..|+.+.- ++..++.++.-|+|-++++.+..++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 44566777788888888887776543 445665542 333455667789999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
+|++..++ +..|..+...=+.++|..-|..++++++
T Consensus 260 ~~~nvKA~-frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 260 HPGNVKAY-FRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred CCchHHHH-HHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 99998865 8899999999999999999999998755
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.72 E-value=13 Score=39.40 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=103.9
Q ss_pred HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHH
Q 012265 127 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIA 206 (467)
Q Consensus 127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A 206 (467)
.....|.++...-.++..+-.-......++-.+..+...|+.+-|...+....+.+-.....+++.-|.+--.+|++..|
T Consensus 306 f~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A 385 (577)
T KOG1258|consen 306 FEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDA 385 (577)
T ss_pred hhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHH
Confidence 34445666666666666543323333445545555566688888888888877766444445678888888899999999
Q ss_pred HHHHhccccCCCChhHH---HHHHHHHHHcCCHHHHHH---HHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HCCChhH
Q 012265 207 AESLAKIPDIQHMPATV---ATLVALKERAGDIDGAAA---VLDSAIKWWLNAMTEDNKLSVIMQEAASFKL-RHGREED 279 (467)
Q Consensus 207 ~~~L~~~~~~~~~p~~~---~~l~~ly~~~g~~~~A~~---~l~~al~~~~~~~~~~~~~~~ll~~la~~~l-~~g~~~~ 279 (467)
..+|+++.+-- |+++ ..-+.+..+.|..+.+.. ++......+. ...-+..+....+.+.. -.++.+.
T Consensus 386 ~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~----~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 386 KVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE----NNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred HHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc----CcchhHHHHHHHHHHHHHHhcCHHH
Confidence 99999997532 5543 334566667888888774 3322222211 11223334444555553 4789999
Q ss_pred HHHHHHHHHHhcCCH
Q 012265 280 ASHLFEELVKTHGSI 294 (467)
Q Consensus 280 A~~~le~ll~~~pd~ 294 (467)
|..++.+++...|+.
T Consensus 460 a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 460 ARIILLEANDILPDC 474 (577)
T ss_pred HHHHHHHhhhcCCcc
Confidence 999999999998874
No 289
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.10 E-value=3.9 Score=39.24 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=57.0
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc------CCCChhHHHHHHHHHHHcCCHH
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD------IQHMPATVATLVALKERAGDID 237 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~g~~~ 237 (467)
++++|++|+++|... |.++++.|++..|.++-.-+++ ...+......++.++...+..+
T Consensus 2 ~~kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 567888888776542 2233344444444443332221 1124445567777777766444
Q ss_pred -HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHH
Q 012265 238 -GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF 284 (467)
Q Consensus 238 -~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~l 284 (467)
+-..++++++.|- ...........++..+|..+.+.|++.+|..+|
T Consensus 67 p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 67 PERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4556777788765 322222233456777899999999999888655
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.82 E-value=5.3 Score=35.91 Aligned_cols=115 Identities=15% Similarity=0.080 Sum_probs=63.6
Q ss_pred hhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhcc-CCCChhHHHHhhhhhhhhhhhH
Q 012265 23 EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALK-GPKDVNDSLKKLDRIKEKDMQN 101 (467)
Q Consensus 23 ~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~-~~~~~~~a~~~l~~~~~~~~~~ 101 (467)
+..++.|+.-.+..+|..|...|++++|.+.|.++.....+.....- +.-+++.+. -..+...+...+.++...
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id-~~l~~irv~i~~~d~~~v~~~i~ka~~~---- 102 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID-MCLNVIRVAIFFGDWSHVEKYIEKAESL---- 102 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH----
Confidence 44566677788999999999999999999999998775432221111 111221110 012333333332221110
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC
Q 012265 102 FQLARVLDLRLS-PKQREAIYANRVLLLLHANKMDQARELVAALPDMFP 149 (467)
Q Consensus 102 ~~~~~~l~~kL~-~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P 149 (467)
+ .+.. ..-..-+..-.++.++..++|..|.+.|-.....+.
T Consensus 103 ------~-~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 103 ------I-EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred ------H-hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 0 0000 011122444567777788888888877777766554
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.69 E-value=0.45 Score=30.91 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
+.+...+|.+|..+|++++|+.++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345678999999999999999999999875
No 292
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.46 E-value=0.52 Score=49.18 Aligned_cols=96 Identities=19% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHH
Q 012265 155 LLLQAAVLV-RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKER 232 (467)
Q Consensus 155 ~ll~a~l~~-~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~ 232 (467)
.+..|.+|. ..|+.-.|+++|+.++..-|.....-...||++.+..|-..+|-..|.+.+.+.+ .|-+...++..|+.
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA 688 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence 345666664 5789999999999999888865443337889999999988899999988887664 67778888999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 012265 233 AGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 233 ~g~~~~A~~~l~~al~~~ 250 (467)
..+.+.|++.|+.|+...
T Consensus 689 l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLT 706 (886)
T ss_pred HhhhHHHHHHHHHHHhcC
Confidence 999999999999998764
No 293
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=6 Score=38.08 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=84.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHcCChHHHHHHHhccccC--CC-ChhH--
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLP--------DKSKIILLARAQVAAAANHPFIAAESLAKIPDI--QH-MPAT-- 222 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P--------~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~--~~-~p~~-- 222 (467)
+-.|.-.++.+++++|+..|.+++...- +....+ +-++++|...|++..-.+.....-+. ++ .|.+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tv-lel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~K 85 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATV-LELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITK 85 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHH-HHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHH
Confidence 4556667889999999999999887621 122233 88999999999988766555444321 11 3333
Q ss_pred -HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 223 -VATLVALKE-RAGDIDGAAAVLDSAIKWWLNAMTEDNKL-SVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 223 -~~~l~~ly~-~~g~~~~A~~~l~~al~~~~~~~~~~~~~-~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
+.+|..-+. ....++..+.+++..++|..+... ..+ ..+-..++.+++..|.|.+|+.+...++..
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr--~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKR--KFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 223322221 235678889999999988643110 011 112233577889999999999988877754
No 294
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.36 E-value=16 Score=39.59 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=37.1
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
+..++|.+|+.++..+-.+.-.. .. +-..|+-|...|+|+-|..+|-+.- ........|-+.|+.+.|..+
T Consensus 743 i~akew~kai~ildniqdqk~~s-~y-y~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTAS-GY-YGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcccc-cc-chHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHHHHH
Confidence 34566667766666554433222 11 2345666666666666666665432 112223345555555555444
Q ss_pred HH
Q 012265 243 LD 244 (467)
Q Consensus 243 l~ 244 (467)
-+
T Consensus 814 a~ 815 (1636)
T KOG3616|consen 814 AE 815 (1636)
T ss_pred HH
Confidence 33
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.32 E-value=0.77 Score=32.39 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHH
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAV 70 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~v 70 (467)
...+|..+.+.|++++|....+.+|+.+|+|..+..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4678999999999999999999999999998877653
No 296
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.16 E-value=1.8 Score=36.74 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHhccc-cCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 120 IYANRVLLLLHANK---MDQARELVAALPD-MFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 120 l~~n~all~l~~~~---~~~A~~~~~~l~~-~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
-.||.+..+..+.+ ..+-+.+++.+.+ .+|.... ..+++|--+.+.|+|+.+++++..+++..|++..+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 46788888887766 4566788888885 6676544 45567777889999999999999999999998764
No 297
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.04 E-value=0.61 Score=48.67 Aligned_cols=100 Identities=16% Similarity=0.058 Sum_probs=61.9
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHhccccCCCCchH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 122 ANRVLLLLH-ANKMDQARELVAALPDMFPDSVMP-LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 122 ~n~all~l~-~~~~~~A~~~~~~l~~~~P~~~~~-~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
+|.+-||.. .|+..+|..++..+....|..... .+-+|.++++.+-.-+|-.+|.+.+...-..+ ..++.++..|+.
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-l~~~~~g~~~l~ 688 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP-LTFLSLGNAYLA 688 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-hHHHhcchhHHH
Confidence 344555554 466677777777666666653332 34556666666666677777777776663333 234667777777
Q ss_pred cCChHHHHHHHhccccCCC-ChhH
Q 012265 200 ANHPFIAAESLAKIPDIQH-MPAT 222 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~~-~p~~ 222 (467)
..+.+.|++.|+.+++.+. .|..
T Consensus 689 l~~i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred HhhhHHHHHHHHHHHhcCCCChhh
Confidence 7777777777777776554 4443
No 298
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.00 E-value=17 Score=38.83 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=58.7
Q ss_pred HHHHHHcCCHHHHHHHHHhc----------cccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 125 VLLLLHANKMDQARELVAAL----------PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l----------~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
+-+++.+|..++|+.++-.- .+.+-...+.....++-+.+...+.-|-++++++ ++ . -.++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~-----gD---~-ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM-----GD---L-KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh-----cc---H-HHHh
Confidence 55666777777776654420 0111112222233333333444444455554443 11 1 2456
Q ss_pred HHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA 246 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~a 246 (467)
|++.+.+++.+|..+-++..+. .+.++.-.+..+....++++|.+.|.+|
T Consensus 781 qlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 7777778888877777765543 3455555566666666677666655554
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.95 E-value=1.5 Score=34.93 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
.++.++...|++++|+..+++++...+.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666655543
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.85 E-value=0.58 Score=27.51 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHhc
Q 012265 190 LLARAQVAAAANHPFIAAESLAK 212 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~ 212 (467)
++.||.++..+|++++|..++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 46788888888888888887763
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.51 E-value=0.92 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
.+..|+.+|..+|++++|+.++++++..++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 4567788888888888888888888876644
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=89.23 E-value=12 Score=31.27 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=60.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhC---CCc--------HHHHHHHHHHHHHHcCChHHHHHHHhccc-------cCCC
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKL---PDK--------SKIILLARAQVAAAANHPFIAAESLAKIP-------DIQH 218 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~---P~~--------~~~~~l~Laql~~~~g~~~~A~~~L~~~~-------~~~~ 218 (467)
..+.-.+..|-|++|..-|.++.+.. |.. ...++-.|+..+...|+|++++..-+..+ ++..
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 34445567777888877777776542 221 11345567888889999998887766665 3433
Q ss_pred Chh-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 219 MPA-----TVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 219 ~p~-----~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
+.+ ++...+..+...|+.++|+..|+.+.+-...
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 332 3445566777899999999999988765433
No 303
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.19 E-value=4.3 Score=42.12 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=77.7
Q ss_pred HHHHHHH-HcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 123 NRVLLLL-HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 123 n~all~l-~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
+...-+| ..|-.+.|...+.. | .. +-.+.++.|+.+.|.++..+ -++..- +-.||.+.+.+|
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~~D-----~---~~---rFeLAl~lg~L~~A~~~a~~-----~~~~~~-W~~Lg~~AL~~g 361 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFVTD-----P---DH---RFELALQLGNLDIALEIAKE-----LDDPEK-WKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHSS------H---HH---HHHHHHHCT-HHHHHHHCCC-----CSTHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHhhcCC-----h---HH---HhHHHHhcCCHHHHHHHHHh-----cCcHHH-HHHHHHHHHHcC
Confidence 3344444 46667888776543 2 22 22455788999999887543 233443 478999999999
Q ss_pred ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265 202 HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS 281 (467)
Q Consensus 202 ~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~ 281 (467)
+++-|..+|.++-+ +..|..||.-.|+.+.-..+.+.+... ++.+ ..+ ..++-.|+.++-+
T Consensus 362 ~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~------~~~n--~af----~~~~~lgd~~~cv 422 (443)
T PF04053_consen 362 NIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEER------GDIN--IAF----QAALLLGDVEECV 422 (443)
T ss_dssp BHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHT------T-HH--HHH----HHHHHHT-HHHHH
T ss_pred CHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHc------cCHH--HHH----HHHHHcCCHHHHH
Confidence 99999999999764 335667888899987766666655432 1111 111 2234457777777
Q ss_pred HHHHH
Q 012265 282 HLFEE 286 (467)
Q Consensus 282 ~~le~ 286 (467)
++|.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 304
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.14 E-value=0.65 Score=27.12 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+..+|.++...|++++|...|+.+++.+|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445799999999999999999999987763
No 305
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.92 E-value=8.7 Score=43.11 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=62.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHH
Q 012265 219 MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALV 298 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala 298 (467)
.|++|+.++...++.|...+|+..|-+| +|+. .+.++.....+.|.|++-+.++.-+.+.--....-.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika---------dDps---~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA---------DDPS---NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc---------CCcH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 6899999999999999999988877654 1222 245567778899999999999998887664444556
Q ss_pred HHHHHhccCC-hhHHHHH
Q 012265 299 GLVTTSAHVD-VDKAESY 315 (467)
Q Consensus 299 ~Lv~a~~~~d-~~kA~~l 315 (467)
.|+.||+..+ ...-+.+
T Consensus 1171 eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHHHHhchHHHHHHH
Confidence 7788887766 3444444
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.58 E-value=0.96 Score=29.08 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCChHHHHHH--HHHHhccCCC
Q 012265 34 AVQLAYVQQLLGNTQEAFGA--YTDIIKRNLA 63 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~--y~~~l~~~p~ 63 (467)
+.-+|++++.+|++++|+.+ |.-+...++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 46689999999999999999 5466655553
No 307
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.17 E-value=1.3 Score=42.84 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
+.+.-....|+.+.|..+|+.+++..|.++++.+-.+......++.-+|-.+|-+++...|.+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 33333344444444444444444444444444444444433344444444444444444444443
No 308
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.00 E-value=6.4 Score=39.01 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=76.0
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-----ChHHHHHH
Q 012265 135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-----HPFIAAES 209 (467)
Q Consensus 135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-----~~~~A~~~ 209 (467)
+....+++++++.+|++....+....+..+.-..++..+..++++..+|++... ....|-..++ .+.....+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~L---W~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPEL---WREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHH---HHHHHHHHHHHhccCcHHHHHHH
Confidence 334556777777799988877766666666667778888999999999998653 3444444444 46677777
Q ss_pred Hhcccc-------CC---C--Ch-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 210 LAKIPD-------IQ---H--MP-------ATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 210 L~~~~~-------~~---~--~p-------~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
|.+++. .. + .+ .++..+.....+.|..+.|+..++..+++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 777652 10 0 11 22344566677789999999999888775
No 309
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.74 E-value=0.76 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHH
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYT 55 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~ 55 (467)
..+.+|.++..+|+.++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45779999999999999999876
No 310
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.36 E-value=5.9 Score=36.67 Aligned_cols=126 Identities=15% Similarity=0.018 Sum_probs=62.6
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
-+++.+...+|+.+.+.-++..|.+... +..|.++|+-.|+|+.|...|+-+..+.+... ..+.+|..+=+.+.+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~-RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t---~~a~lyr~lir~ea~R 85 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGG-RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT---VGASLYRHLIRCEAAR 85 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccc-hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc---hHHHHHHHHHHHHHHH
Confidence 3456666677777777777777766543 45667777777777777777666654432111 1223333322222222
Q ss_pred H-HHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 241 A-VLDSAIKWWLNAMTED-NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 241 ~-~l~~al~~~~~~~~~~-~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
. +|.--. -+....++ +.....++ .+..+-.-|..+.+..+=+.+++.-|.
T Consensus 86 ~evfag~~--~Pgflg~p~p~wva~L~-aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 86 NEVFAGGA--VPGFLGGPSPEWVAALL-AALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred HHHhccCC--CCCCcCCCCHHHHHHHH-HHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 1 111000 00001111 22222233 355666666666666667777766554
No 311
>PF13041 PPR_2: PPR repeat family
Probab=86.78 E-value=2.9 Score=28.58 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHHhc
Q 012265 267 AASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTSA 305 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a~~ 305 (467)
+...+.+.|++++|.++|++..+.. ||..+...++.+++
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566889999999999999999876 78777777776654
No 312
>PRK10941 hypothetical protein; Provisional
Probab=86.70 E-value=3.3 Score=39.90 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=28.2
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
+.++++++.|+++.+.++...|+++..+ .-.|-+|.+.|.+..|..-|+.+++
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~-RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDPYEI-RDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4455555555555555555555554433 3445555555555555555555544
No 313
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.29 E-value=3.5 Score=40.38 Aligned_cols=94 Identities=11% Similarity=-0.122 Sum_probs=76.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCch----HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVM----PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~----~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
.+.-|+...+|..|+..|.+.++..-++.. .+...|+.....|+|-.|+.-+..++...|.+.... +.=|+.++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~-~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY-IRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh-hhhhHHHHH
Confidence 577788889999999999988876544433 233567777788999999999999999999998764 777889999
Q ss_pred cCChHHHHHHHhccccCCC
Q 012265 200 ANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~~ 218 (467)
..++.+|..+.+..+.++.
T Consensus 166 Le~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHhhhhhhhH
Confidence 9999999999998876543
No 314
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.17 E-value=50 Score=35.08 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccC-CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMF-PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~-P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
..+++.+...-..|..+-|...+....+.+ |..+...++.|.+-...|++..|..+|+.+.+..|+...+. +.-+.+.
T Consensus 332 efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~-l~~~~~e 410 (577)
T KOG1258|consen 332 EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVV-LRKINWE 410 (577)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhH-HHHHhHH
Confidence 355666666667788888887777666554 56667788888888889999999999999999999887655 7778888
Q ss_pred HHcCChHHHH---HHHhccccCCCChhHHHHH----HH-HHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 198 AAANHPFIAA---ESLAKIPDIQHMPATVATL----VA-LKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 198 ~~~g~~~~A~---~~L~~~~~~~~~p~~~~~l----~~-ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
.+.|+.+.+. ..+....+...++++...+ +. .|.-.++.+.|...+.+++..++ ....++.++..
T Consensus 411 ~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~-------~~k~~~~~~~~ 483 (577)
T KOG1258|consen 411 RRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP-------DCKVLYLELIR 483 (577)
T ss_pred HHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC-------ccHHHHHHHHH
Confidence 8999999998 5555555444455544332 22 23346788999999999987642 22334555555
Q ss_pred HHHHCC
Q 012265 270 FKLRHG 275 (467)
Q Consensus 270 ~~l~~g 275 (467)
+.+.++
T Consensus 484 ~~~~~~ 489 (577)
T KOG1258|consen 484 FELIQP 489 (577)
T ss_pred HHHhCC
Confidence 555544
No 315
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.64 E-value=21 Score=37.78 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
+-.+|+|.+...+|+.+-|..+.++.|=.. |..++. +..-..+.. +|.=.. ..|
T Consensus 285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~--d~a~hp----~F~~~sg~c-------RL~y~~--~eN----------- 338 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIERGLYVF--DRALHP----NFIPFSGNC-------RLPYIY--PEN----------- 338 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHH--HHHhcc----ccccccccc-------cCcccc--hhh-----------
Confidence 346899999999999999998888776321 111110 110011000 000000 000
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC-CchHHHHHHHHH-HhcCChhHHHHHHHHH-----HHhCCC
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD-SVMPLLLQAAVL-VRENKAGKAEELLGQF-----AEKLPD 184 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~-~~~~~ll~a~l~-~~~~~~~~A~~~l~~~-----l~~~P~ 184 (467)
.+.--+.+....-+-+.|-+.-|.+.|.-+++.+|. ++.+.++...+| ++..+|.=-|.+.+.+ +...|+
T Consensus 339 ---R~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN 415 (665)
T KOG2422|consen 339 ---RQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN 415 (665)
T ss_pred ---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC
Confidence 011113344455556678899999999999999998 777777666665 5667776556555544 445677
Q ss_pred cHHHHHHHHHHHHHHcCC---hHHHHHHHhccccCCCChhHHHHHH
Q 012265 185 KSKIILLARAQVAAAANH---PFIAAESLAKIPDIQHMPATVATLV 227 (467)
Q Consensus 185 ~~~~~~l~Laql~~~~g~---~~~A~~~L~~~~~~~~~p~~~~~l~ 227 (467)
-.- .++||..|+.... ...|...+.+++. +.|.++..|.
T Consensus 416 ~~y--S~AlA~f~l~~~~~~~rqsa~~~l~qAl~--~~P~vl~eLl 457 (665)
T KOG2422|consen 416 FGY--SLALARFFLRKNEEDDRQSALNALLQALK--HHPLVLSELL 457 (665)
T ss_pred chH--HHHHHHHHHhcCChhhHHHHHHHHHHHHH--hCcHHHHHHH
Confidence 642 3788888888776 5677777777653 2455544433
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.62 E-value=36 Score=32.87 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=112.8
Q ss_pred HHHHHHHhhhhhcCC-CCChhhHHhhhhhHHHHHHHHHHHhC-ChHHHHHHHHHHhcc----CC---Cch---HHHH---
Q 012265 5 YLIFVRIGQETLTDD-NFAEDDIEIELAPIAVQLAYVQQLLG-NTQEAFGAYTDIIKR----NL---ADE---SSFA--- 69 (467)
Q Consensus 5 l~~A~~~~~~~l~~~-~~~~ee~~~El~~i~~qlA~v~~~~G-~~~eA~~~y~~~l~~----~p---~d~---~~~~--- 69 (467)
++.|+.+...+=... -++++.. .+|+.+.+..|.-....+ ++++|...+++++.. .. ..+ ...+
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~-~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMA-EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHH-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 345555554433322 3344444 579999999999999999 999999999998777 21 111 2222
Q ss_pred -HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC
Q 012265 70 -VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF 148 (467)
Q Consensus 70 -va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~ 148 (467)
...+.++..+.......+.+.+..+....++ ...+.+-...+....+..+.+.+.+..++...
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~----------------~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESEYGN----------------KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC----------------CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 1222232222222233333333222111111 11233233333344788999999999888654
Q ss_pred C--CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcH-HHHHHHHHHHHHHcCC--hHHH--HHHHhcccc----
Q 012265 149 P--DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKS-KIILLARAQVAAAANH--PFIA--AESLAKIPD---- 215 (467)
Q Consensus 149 P--~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~-~~~~l~Laql~~~~g~--~~~A--~~~L~~~~~---- 215 (467)
+ +...-..+...-.........|...+..++-.. |... ..-...+..+++.++. .... +..+..+++
T Consensus 152 ~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~ 231 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH 231 (278)
T ss_pred ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH
Confidence 4 222222222222234555667777777666543 2221 1112344455554442 2222 333332221
Q ss_pred ---CCCChhH-------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 216 ---IQHMPAT-------VATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 216 ---~~~~p~~-------~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
....+.. +...+.-..+.++|+.|+.+|+-++
T Consensus 232 ~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 232 SLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1112221 1223455557788888888777554
No 317
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.67 E-value=59 Score=34.54 Aligned_cols=160 Identities=18% Similarity=0.115 Sum_probs=98.6
Q ss_pred HcCCHHHHHHHHHhcc------------ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh-----C----------
Q 012265 130 HANKMDQARELVAALP------------DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK-----L---------- 182 (467)
Q Consensus 130 ~~~~~~~A~~~~~~l~------------~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~-----~---------- 182 (467)
+++.|++|...|.-.+ ..+|-++...+..|.+...+|+.+-|-.++++.|-. +
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3455677777666433 334666666777777788899999998888876531 2
Q ss_pred ------CCcHHHHHHH---HHHHHHHcCChHHHHHHHhccccCCC--ChhHHHHHHHHH-HHcCCHHHHHHHHHHHHHHH
Q 012265 183 ------PDKSKIILLA---RAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALK-ERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 183 ------P~~~~~~~l~---Laql~~~~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly-~~~g~~~~A~~~l~~al~~~ 250 (467)
|++-.. +++ .-+-+...|-+.-|.++-.-++.+++ +|-....++.+| ++..+|.=.+.+++..-..-
T Consensus 330 RL~y~~~eNR~F-yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 330 RLPYIYPENRQF-YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred cCcccchhhHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 344322 122 23445578999999999998888775 564444444444 45666766666665442110
Q ss_pred HHhccCCchHHHHHHHHHHHHHHCCC---hhHHHHHHHHHHHhcCC
Q 012265 251 LNAMTEDNKLSVIMQEAASFKLRHGR---EEDASHLFEELVKTHGS 293 (467)
Q Consensus 251 ~~~~~~~~~~~~ll~~la~~~l~~g~---~~~A~~~le~ll~~~pd 293 (467)
. ...-+++. .-..+|.||+.... -+.|...|.+++..+|-
T Consensus 409 ~--l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 409 K--LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred c--HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 0 00012221 12336888888665 46788999999988873
No 318
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.08 E-value=15 Score=30.12 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=22.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 159 AAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
|.-++..|++-+|+++++.++..++++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 44567788888899999988888887654
No 319
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.80 E-value=5.3 Score=38.19 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=36.2
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI 216 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~ 216 (467)
.+..+++++.|....++.+..+|+++..+ .-.|-+|.+.|.+.-|+..|+.+++.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~ei-rDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEI-RDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhc-cCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 45566777777777777777777766544 45566777777777777777765543
No 320
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.68 E-value=17 Score=38.90 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL 182 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~ 182 (467)
-++.|.+..||...|+|.|.+.++++.+-+|.++.-.++.-.+.+.+++..+|+..+.......
T Consensus 395 K~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 395 KIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 4677889999999999999999999999999998877766667778999999998887766543
No 321
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=83.61 E-value=14 Score=36.04 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=52.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 159 AAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
|.-..++|+.++|.++++.++...|+++..+ +-++++....++.-+|-.+|-+++.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L-~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQIL-IEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHH-HHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 3445689999999999999999999999865 8899999999999999999999987754
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.53 E-value=9.5 Score=35.35 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
..-++..+++++++.....-++..|.+.....+.-.+|+-.|+|++|..-|+-+....|++...
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 4467889999999999999999999999888888899999999999999999888888887543
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.47 E-value=8.9 Score=35.06 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=50.7
Q ss_pred hcCChhHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHcCChHHHHHHHhccccC-----CCChhHHHHHHHHHHHcCCH
Q 012265 164 RENKAGKAEELLGQFAEKLP--DKSKIILLARAQVAAAANHPFIAAESLAKIPDI-----QHMPATVATLVALKERAGDI 236 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P--~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~~~p~~~~~l~~ly~~~g~~ 236 (467)
..-.-.+|.+.+.++ +..| +++. +.+.||-.|. ..+.++|+..|.+++++ .++|.++..|+++|.++|++
T Consensus 118 sr~~d~~A~~~fL~~-E~~~~l~t~e-lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGDQEALRRFLQL-EGTPELETAE-LQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCcHHHHHHHHHH-cCCCCCCCHH-HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 333344566555443 2233 2443 5688887776 67889999999888753 34888999999999999998
Q ss_pred HHH
Q 012265 237 DGA 239 (467)
Q Consensus 237 ~~A 239 (467)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 876
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.22 E-value=1.5 Score=29.59 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
.+-||.+|..+|+.+.|..+++.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 456899999999999999999999953
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.07 E-value=3.9 Score=38.01 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=47.4
Q ss_pred chHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC
Q 012265 3 LMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL 62 (467)
Q Consensus 3 ~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p 62 (467)
.||..|...+.++++.++...+. .+|. .+.+.+|.+..+.|++++|...|.+++...-
T Consensus 139 ~fl~~Al~~y~~a~~~e~~~~~~-~~~~-~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 139 RFLRKALEFYEEAYENEDFPIEG-MDEA-TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCC-chHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 58999999999999988764433 2333 4567799999999999999999999998744
No 326
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.95 E-value=29 Score=32.77 Aligned_cols=166 Identities=13% Similarity=0.004 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK--SKIILLARAQVA 197 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~--~~~~~l~Laql~ 197 (467)
...|.++-+.+++++....+.++...+|+-. .-.++..+.-..-|..-.+.+.+.......... ... ..+.+-|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~--~~~i~~y 82 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQ--VKLIKDY 82 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH--HHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHH--HHHHHHH
Confidence 4568888899999999999999998877532 222333222233344455566665554443221 111 2222222
Q ss_pred HHc--C----ChHHHHHHHhcccc-CCCChhH----HHHHHHHHHH---cC-------CHHHHHHHHHHHHHHHHH-hcc
Q 012265 198 AAA--N----HPFIAAESLAKIPD-IQHMPAT----VATLVALKER---AG-------DIDGAAAVLDSAIKWWLN-AMT 255 (467)
Q Consensus 198 ~~~--g----~~~~A~~~L~~~~~-~~~~p~~----~~~l~~ly~~---~g-------~~~~A~~~l~~al~~~~~-~~~ 255 (467)
... . --.+.+.++...+- ...++.. +-..|..|.- -. -.+.|...|++|...-.. -++
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~ 162 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP 162 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Confidence 110 1 11233333333321 0011211 1111222221 11 126777888888877655 344
Q ss_pred CCchHHHHHHHHHHHHHH-CCChhHHHHHHHHHHH
Q 012265 256 EDNKLSVIMQEAASFKLR-HGREEDASHLFEELVK 289 (467)
Q Consensus 256 ~~~~~~~ll~~la~~~l~-~g~~~~A~~~le~ll~ 289 (467)
.+|-...+.+..+.||.. .|+.++|..+-++++.
T Consensus 163 ~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 163 THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 445444455555666644 8999999987777765
No 327
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.91 E-value=22 Score=38.01 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
.-..|+.+-+...++++...++.-......+....+..|..+-.-++.++|-.+|+.++.+||++. ++-.|+-+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 87 (578)
T PRK15490 11 LGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEA---RYEYARRLYNT 87 (578)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcch---HHHHHHHHHhh
Confidence 344577777778899998888875544444445577888888888999999999999999999953 47789999999
Q ss_pred CChHHHHHHHhccccCC-CC-h---hHHHHHHHHHHHcC-CH-----HHHHHHHHHHHHHHHHh
Q 012265 201 NHPFIAAESLAKIPDIQ-HM-P---ATVATLVALKERAG-DI-----DGAAAVLDSAIKWWLNA 253 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~-~~-p---~~~~~l~~ly~~~g-~~-----~~A~~~l~~al~~~~~~ 253 (467)
|-...|..+|.++.+-- .. . +-+.....+|.+.+ +- .-.+-.++.++-++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (578)
T PRK15490 88 GLAKDAQLILKKVSNGVQKKYNNYLGKINKICDLLERLEGKAIPVGTNTCIIAMKHAILFYRNR 151 (578)
T ss_pred hhhhHHHHHHHHhCccHhHHHHHHHHHHHHHHHHHHHhccCCCCCccchHHHHHHHHHhhhhcc
Confidence 99999999999775421 10 1 11122233444432 21 12455677788777664
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.61 E-value=52 Score=32.37 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhc--------
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-----MPATVATLVALKERAGDIDGAAAVLDSAIK-WWLNAM-------- 254 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~-~~~~~~-------- 254 (467)
..+..+.+...+|+++-|...+.++..... .|.+....+.++-..|+..+|+..++..+. ......
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL 227 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 347888999999999999999888876431 466666778888889999999998888776 222110
Q ss_pred ------------------cCCchHHHHHHHHHHHHHHC------CChhHHHHHHHHHHHhcCC-HHHHHHHHH
Q 012265 255 ------------------TEDNKLSVIMQEAASFKLRH------GREEDASHLFEELVKTHGS-IEALVGLVT 302 (467)
Q Consensus 255 ------------------~~~~~~~~ll~~la~~~l~~------g~~~~A~~~le~ll~~~pd-~~ala~Lv~ 302 (467)
........++..+|.+.... +..+++...|..+++.+|. ..++..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred hhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 00112334555567777666 8889999999999999875 344444433
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.18 E-value=1.4 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.015 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCChHHHHHHHhccc
Q 012265 191 LARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
|.||..|+..|+++.|..+|+.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 445555555555555555555554
No 330
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.90 E-value=4.9 Score=41.28 Aligned_cols=84 Identities=7% Similarity=-0.023 Sum_probs=40.1
Q ss_pred HcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHH
Q 012265 130 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAES 209 (467)
Q Consensus 130 ~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~ 209 (467)
..|++-.|.+.+..++..+|+.+...++.+.+....|.|+.|...+..+-..-....... -++-+-....|++++|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~-~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTL-RCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHH-HHHHHhhhchhhHHHHHHH
Confidence 345555555555555555555555555555555555666555555543322211111111 2233344455555555555
Q ss_pred Hhccc
Q 012265 210 LAKIP 214 (467)
Q Consensus 210 L~~~~ 214 (467)
-+-++
T Consensus 380 a~~~l 384 (831)
T PRK15180 380 AEMML 384 (831)
T ss_pred HHHHh
Confidence 55444
No 331
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=81.88 E-value=16 Score=36.13 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHHcCChHHHHHHHhccccC---CCCh--
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEK--LPDK--------SKIILLARAQVAAAANHPFIAAESLAKIPDI---QHMP-- 220 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~--------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~~p-- 220 (467)
+-.+..+...+++.+++.+|..++.. .|.+ ...+ +-++++|.+.|++++-...+...-.. -..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~I-lel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSI-LELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 34455566777788888888888773 1211 1123 67788888888877766665554321 0111
Q ss_pred -hHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 221 -ATVATLVALKER-AGDIDGAAAVLDSAIKWWLNAMTEDNKL-SVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 221 -~~~~~l~~ly~~-~g~~~~A~~~l~~al~~~~~~~~~~~~~-~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
.++..|+..... -+..+.-+.++...++|...... ..+ ..+-..++.+|+..++|.+|+.+...++.
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR--tFLRq~Learli~Ly~d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR--TFLRQSLEARLIRLYNDTKRYTEALALINDLLR 156 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 123344444433 34556677777777776543210 111 11222345666777777777766655554
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.70 E-value=6.5 Score=40.43 Aligned_cols=51 Identities=10% Similarity=0.024 Sum_probs=43.1
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
...|+.-.|-+-+..++..+|.++..+ ++.+.+....|.|+.|.+.+..+.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i-~l~~~i~~~lg~ye~~~~~~s~~~ 350 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLI-QLRSVIFSHLGYYEQAYQDISDVE 350 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhh-HHHHHHHHHhhhHHHHHHHhhchh
Confidence 467888888888999999999988765 677889999999999999887663
No 333
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=81.53 E-value=14 Score=37.25 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc--cCCCChhHHH-HHHHHHHHcCCHHHHH-HHHH
Q 012265 169 GKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP--DIQHMPATVA-TLVALKERAGDIDGAA-AVLD 244 (467)
Q Consensus 169 ~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~--~~~~~p~~~~-~l~~ly~~~g~~~~A~-~~l~ 244 (467)
-+|+-+|+.++...|.+... ++.|+++|...|-...|...|..+- .++. +.++ .+..-+...|....+. .+++
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~-~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~--DTL~h~~~~r~~~~~~~~~~~~~~~~ 276 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQL-KLLLVRLYSLLGAGSLALEHYESLDIKNIQL--DTLGHLILDRLSTLGPFKSAPENLLE 276 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHhcChHHHHH--HHhHHHHHHHHhccCcccccchHHHH
Confidence 47899999999999999874 6999999999999999999998763 1111 1111 2223333456666766 8888
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHH
Q 012265 245 SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFE 285 (467)
Q Consensus 245 ~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le 285 (467)
.+..+|.....+ ... ....-++.|.|.+..++.+
T Consensus 277 ~~~~fy~~~~~~---~~e----~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 277 NALKFYDNSEKE---TPE----FIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHH---HHH----HHHHHHhCCCchhHHHHHH
Confidence 888888653321 111 1222357888876665443
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.13 E-value=42 Score=38.53 Aligned_cols=24 Identities=4% Similarity=-0.025 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhc
Q 012265 121 YANRVLLLLHANKMDQARELVAAL 144 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l 144 (467)
.+.+..+..+.++|+.|...+..+
T Consensus 883 ~~rkF~ID~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 883 LLRKFKIDDYLKRYEDALSHLSEC 906 (1265)
T ss_pred hhhheeHHHHHHHHHHHHHHHHHc
Confidence 345566666777777776666554
No 335
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.43 E-value=17 Score=37.15 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAI----KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al----~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
.|..++.-.||+..|++.++..- ..|...+ .....++..+|..|+.+++|.+|+.+|..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~---~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVP---ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCc---chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778899999988887421 0111222 22334566689999999999999999999875
No 336
>PF12854 PPR_1: PPR repeat
Probab=80.16 E-value=4.3 Score=25.49 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 220 PATVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 220 p~~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
.-.+..|+..|.+.|+.++|..+|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34456666667777777777666654
No 337
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=80.00 E-value=21 Score=41.27 Aligned_cols=162 Identities=15% Similarity=0.041 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCHHHHHH------HHH-hccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHH-------HhC-CCcHH
Q 012265 123 NRVLLLLHANKMDQARE------LVA-ALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFA-------EKL-PDKSK 187 (467)
Q Consensus 123 n~all~l~~~~~~~A~~------~~~-~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l-------~~~-P~~~~ 187 (467)
..+...+..|.+.+|.+ .++ .+..++|+....+..++.++.+.+++++|+..-.++. ..+ |+...
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 34555556667777776 444 2335678888888899999999999999988666543 222 33322
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChh--H-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CC
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPA--T-VATLVALKERAGDIDGAAAVLDSAIKWWLNAMT-ED 257 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~--~-~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~ 257 (467)
..-.++-.....++...|...+.++..+ . ..|. . ...+..++...++++-|+.+++.|+..-..... ..
T Consensus 1017 -~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1017 -AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred -HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 2245566667788888999888887531 1 1343 2 245677777789999999999999985444322 11
Q ss_pred chHHHHHHHHHHHHHHCCChhHHHHHHH
Q 012265 258 NKLSVIMQEAASFKLRHGREEDASHLFE 285 (467)
Q Consensus 258 ~~~~~ll~~la~~~l~~g~~~~A~~~le 285 (467)
-........++..+...+++..|....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1222223334444444555554444333
No 338
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.84 E-value=6.4 Score=38.04 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
+..++..+...|+++.++..+++++..++ +...+..+...|...|+...|+..|+++-.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 46778888888888888888888887764 555666777888888888888888887655
No 339
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.38 E-value=3.1 Score=38.69 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=46.8
Q ss_pred HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 128 ~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
....++.+.+.+++.+++..-|++...++-.+....+.|+.+.|.+.|++.++.+|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345667777788888888888888888877777777888888888888888888887654
No 340
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.36 E-value=31 Score=34.92 Aligned_cols=100 Identities=10% Similarity=-0.006 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc---CCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD---IQHMPA----TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI 263 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~---~~~~p~----~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~l 263 (467)
+.+..+|...|+...-...|...+. ++++.. ++..|-..|+..+.++.|..+..+..- ++.. .+......
T Consensus 173 fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~-snne~ARY 249 (493)
T KOG2581|consen 173 FYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAA-SNNEWARY 249 (493)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--cccc-ccHHHHHH
Confidence 4455566666766655555555542 332221 234455566666777777776666541 1111 11122333
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
++-+|.+..-+++|..|.++|-.++...|.
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 444677777777888888888877777764
No 341
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.26 E-value=3.3 Score=38.58 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 230 KERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 230 y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
....++.+.|.+++.+++..- +....-|+.+|......|+.+.|...|++.++.+|+.
T Consensus 5 ~~~~~D~~aaaely~qal~la-------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 346688899999999988752 2223347778999999999999999999999999764
No 342
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.98 E-value=4.3 Score=39.44 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=56.8
Q ss_pred ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHH
Q 012265 146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVA 224 (467)
Q Consensus 146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~ 224 (467)
..+|+++..+..-+.-..+.|-+.+--.++.+++..||.+.+.+.++-+.-|...++++.+..++.+.+...+ .|.+|.
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3467777766655554456677777778888888888888776544456667778888888888888887654 666654
Q ss_pred H
Q 012265 225 T 225 (467)
Q Consensus 225 ~ 225 (467)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 3
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.43 E-value=64 Score=30.86 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHH---------H--HHHHH-HHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHH
Q 012265 219 MPATVATLVALKERAGDIDGAAAVLD---------S--AIKWW-LNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEE 286 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~~~~A~~~l~---------~--al~~~-~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ 286 (467)
+|.++..++..|.+.|++.+|...|- . .+..| ....+ .....++.+...-|+..|+...|...|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~--~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYP--SEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45555555555555555555554442 1 22223 22222 22333455556667889999999988777
Q ss_pred HHHh
Q 012265 287 LVKT 290 (467)
Q Consensus 287 ll~~ 290 (467)
-++.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 344
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.87 E-value=91 Score=32.28 Aligned_cols=194 Identities=12% Similarity=0.013 Sum_probs=108.9
Q ss_pred HHHHHhCChHHHHHHHHHHhccCCCchHHH-HHH----HhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh-cCC
Q 012265 39 YVQQLLGNTQEAFGAYTDIIKRNLADESSF-AVA----VNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD-LRL 112 (467)
Q Consensus 39 ~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~-~va----~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~-~kL 112 (467)
...-++|++.+|...+.-+...+|.+.... +++ ..++++. +.....-++.+..+ -+..+ ...
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~--DD~~~Tklr~yL~l----------we~~qs~Di 373 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCE--DDESYTKLRDYLNL----------WEEIQSYDI 373 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhc--chHHHHHHHHHHHH----------HHHHHhhcc
Confidence 344578899999998888888888655221 111 1233322 22222222222211 11111 112
Q ss_pred CHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHH--------HHHHHHHh--
Q 012265 113 SPKQREAIYANRVLLLLHANK-MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEE--------LLGQFAEK-- 181 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~-~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~--------~l~~~l~~-- 181 (467)
.+.|..--...-|--+...|+ -+.|..++..++.-.|.+.. ........++ ..|.+|+. .++.+++.
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~e-c~n~v~~fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIE-CENIVFLFVK-QAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHH-HHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 333444444556667778777 88899999888765555442 1111111121 12333321 22233322
Q ss_pred -CCC---cHHH-HHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265 182 -LPD---KSKI-ILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA 246 (467)
Q Consensus 182 -~P~---~~~~-~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~a 246 (467)
.|- +... -.+.=|+.+..+|+|.++...=.=+..+.++|.++..+|..+....++++|..+|...
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 121 1111 1245577788999999987665545567789999999999999999999998888763
No 345
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.59 E-value=18 Score=37.49 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC-hhHHHHHHHHHHHhCCCcHHH
Q 012265 131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENK-AGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~-~~~A~~~l~~~l~~~P~~~~~ 188 (467)
.+.+.....+|.+++..||+++..++.-|.-...-+. .+.|..++.+.+..+|+++..
T Consensus 118 ~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 118 KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 3346777778888888888888887776655444333 777788888888888887653
No 346
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.56 E-value=32 Score=37.40 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=14.9
Q ss_pred HHHHHhCChHHHHHHHHH
Q 012265 39 YVQQLLGNTQEAFGAYTD 56 (467)
Q Consensus 39 ~v~~~~G~~~eA~~~y~~ 56 (467)
.++...|.++.|++.+-.
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 678899999999998876
No 347
>PRK12798 chemotaxis protein; Reviewed
Probab=77.48 E-value=89 Score=31.96 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=97.3
Q ss_pred HHHHHHhCChHHHHHHHHHHhccC-CCchHHH-HHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHH
Q 012265 38 AYVQQLLGNTQEAFGAYTDIIKRN-LADESSF-AVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPK 115 (467)
Q Consensus 38 A~v~~~~G~~~eA~~~y~~~l~~~-p~d~~~~-~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~ 115 (467)
+-+....|+..+|...+..+.-.. |.....+ +++..|++. ..++..++..++...=..|- ++.
T Consensus 119 g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~---~~dP~~Al~~lD~aRLlaPG--TLv---------- 183 (421)
T PRK12798 119 GALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMV---ATDPATALKLLDQARLLAPG--TLV---------- 183 (421)
T ss_pred HHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhc---ccCHHHHHHHHHHHHHhCCc--hHH----------
Confidence 444457899999999887765442 2222222 233334432 24567777776542100010 111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH---HHHHHhcCChhHHHHHHHHHHHh-CCCcHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ---AAVLVRENKAGKAEELLGQFAEK-LPDKSKIILL 191 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~---a~l~~~~~~~~~A~~~l~~~l~~-~P~~~~~~~l 191 (467)
......+...+.-..|+.+.+..+..+....|..++.+.-+. +..+.+..+-..- ..+..++.. .|+.-..+++
T Consensus 184 -EEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL 261 (421)
T PRK12798 184 -EEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYL 261 (421)
T ss_pred -HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHH
Confidence 123455667777889999999988888888888887653221 2222332222222 235555554 5555455678
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCC
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~ 217 (467)
.+|+--+..|+.+-|.-.-+++..+.
T Consensus 262 ~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 262 RIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 89999999999999988888887543
No 348
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.47 E-value=70 Score=30.74 Aligned_cols=143 Identities=11% Similarity=-0.015 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHcC----CHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 120 IYANRVLLLLHAN----KMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 120 l~~n~all~l~~~----~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
..++.+.++.... +..+|...+.. ....++..+....+.++.. ..+..+|...|.++....-.......+
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~ 152 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY 152 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3445555555432 36677777773 3345566677777777654 447889999999998874332112247
Q ss_pred HHHHHHHHcC-------ChHHHHHHHhccccCCCChhHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265 192 ARAQVAAAAN-------HPFIAAESLAKIPDIQHMPATVATLVALKERA----GDIDGAAAVLDSAIKWWLNAMTEDNKL 260 (467)
Q Consensus 192 ~Laql~~~~g-------~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~----g~~~~A~~~l~~al~~~~~~~~~~~~~ 260 (467)
.++.+|..-+ +...|+..|.++.+.. ++.....|+.+|..- .++.+|..+|.++... ++
T Consensus 153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~------g~--- 222 (292)
T COG0790 153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ------GD--- 222 (292)
T ss_pred HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CC---
Confidence 8888887542 2337888888876543 456666778777652 3778888888887753 12
Q ss_pred HHHHHHHHHHHHHCC
Q 012265 261 SVIMQEAASFKLRHG 275 (467)
Q Consensus 261 ~~ll~~la~~~l~~g 275 (467)
...+..++ ++...|
T Consensus 223 ~~a~~~~~-~~~~~g 236 (292)
T COG0790 223 GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHH-HHHhcC
Confidence 22344456 666666
No 349
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.32 E-value=20 Score=34.05 Aligned_cols=83 Identities=20% Similarity=0.081 Sum_probs=50.0
Q ss_pred HHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHH
Q 012265 205 IAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF 284 (467)
Q Consensus 205 ~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~l 284 (467)
.|...|.+....+....+...++..|...|++++|..+|+.+...|.... =..-...++..+..+....|+.+..+.+.
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-WWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44444444333222334556788888889999999999998877664311 01112334444566677778887777665
Q ss_pred HHHH
Q 012265 285 EELV 288 (467)
Q Consensus 285 e~ll 288 (467)
=+++
T Consensus 242 leLl 245 (247)
T PF11817_consen 242 LELL 245 (247)
T ss_pred HHHh
Confidence 5443
No 350
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.08 E-value=14 Score=30.37 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=30.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchH---HHHHHHHH
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMP---LLLQAAVL 162 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~---~ll~a~l~ 162 (467)
.+.-++..|+.-+|.++++.++..++++... ..+++.++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if 43 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIF 43 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHH
Confidence 3567888999999999999999999988754 33455544
No 351
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=76.94 E-value=25 Score=35.49 Aligned_cols=108 Identities=18% Similarity=0.026 Sum_probs=69.3
Q ss_pred CChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265 201 NHPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~ 279 (467)
...-+|+.+|+.++... +++.+...|+.+|...|-...|...|...--. +. ++.++-..+..-+...|....
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK--~I-----Q~DTL~h~~~~r~~~~~~~~~ 269 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIK--NI-----QLDTLGHLILDRLSTLGPFKS 269 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChH--HH-----HHHHhHHHHHHHHhccCcccc
Confidence 34557888888887654 48888889999999999999999988754211 11 111111112222344666666
Q ss_pred HH-HHHHHHHHhcCC--HHHHHHHHHHhccCChhHHHHH
Q 012265 280 AS-HLFEELVKTHGS--IEALVGLVTTSAHVDVDKAESY 315 (467)
Q Consensus 280 A~-~~le~ll~~~pd--~~ala~Lv~a~~~~d~~kA~~l 315 (467)
+. ..++.++..+.+ .+.--.++.||.+....|.+.+
T Consensus 270 ~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef 308 (365)
T PF09797_consen 270 APENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEF 308 (365)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 66 777777776632 3444557778877777776554
No 352
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.93 E-value=60 Score=32.98 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch----HHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVM----PLLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~----~~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
.....+.-++..++|..|.+.++.+...-|++.. ..+..|..+...-++.+|.+.++.++..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556788888899999999999999876454443 2334555667889999999999988765
No 353
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.79 E-value=13 Score=35.87 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
+.-++..+...++++.++..+++++..+|-+... +..+-..|...|+...|+..|+++-.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~-~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPA-YLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHH-HHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445667788899999999999999999998765 48888999999999999999999853
No 354
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=75.55 E-value=67 Score=34.17 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTT 303 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a 303 (467)
++.++...|+..++...+++++...|. .+.+-+++.+
T Consensus 148 ~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 148 LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 466666667777777777777666654 3444444444
No 355
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.06 E-value=2.7 Score=41.35 Aligned_cols=91 Identities=15% Similarity=0.017 Sum_probs=68.2
Q ss_pred HHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL 272 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l 272 (467)
|.=.+..|.++.|++.|.+.+++.+ ...++...+++++.++....|+.-+..|+....+ ..-..-|+ +....
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-----sa~~ykfr--g~A~r 193 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-----SAKGYKFR--GYAER 193 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-----cccccchh--hHHHH
Confidence 4455678999999999999998765 3334566788999999999999999988875221 11111232 66677
Q ss_pred HCCChhHHHHHHHHHHHhc
Q 012265 273 RHGREEDASHLFEELVKTH 291 (467)
Q Consensus 273 ~~g~~~~A~~~le~ll~~~ 291 (467)
.+|++++|...|+.+++++
T Consensus 194 llg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLD 212 (377)
T ss_pred HhhchHHHHHHHHHHHhcc
Confidence 8899999999999998876
No 356
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.62 E-value=11 Score=42.63 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=65.7
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHHHHHHH----HcC---ChHHHHHHHhccccCCCChhHHHHHHHHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSK--IILLARAQVAA----AAN---HPFIAAESLAKIPDIQHMPATVATLVALKE 231 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~Laql~~----~~g---~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~ 231 (467)
.....+.|+.|+..|+++...+|+..+ .+.+.+|-.++ .+| .+++|+..|+++-.....|--+.-.+.+|.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQ 563 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHH
Confidence 445678899999999999999997432 12243333333 234 478888888887654334433445678899
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhc
Q 012265 232 RAGDIDGAAAVLDSAIKWWLNAM 254 (467)
Q Consensus 232 ~~g~~~~A~~~l~~al~~~~~~~ 254 (467)
++|++++-++.|.-|+..|++++
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 564 RLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HhhhHHHHHHHHHHHHHhcCCCC
Confidence 99999999999998888876543
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.97 E-value=44 Score=33.95 Aligned_cols=59 Identities=22% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSK---IILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~---~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
-.+..+...++|..|.++|..++..-|.+.. ...+..|..+....++.+|...|+.+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455567899999999999999987444433 1234455566789999999999999874
No 358
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=73.90 E-value=1 Score=47.91 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcc--ccCCC-CchHHHHHHHHHHhcCChhHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALP--DMFPD-SVMPLLLQAAVLVRENKAGKAEELLG 176 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~--~~~P~-~~~~~ll~a~l~~~~~~~~~A~~~l~ 176 (467)
..++.-+.+++..|+++.|..+++.+. ...|. .....++.|.+...+|++.+|+..|.
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 334444455555555555555555544 11222 12234455555555555555555554
No 359
>PRK12798 chemotaxis protein; Reviewed
Probab=73.03 E-value=1.2e+02 Score=31.16 Aligned_cols=205 Identities=19% Similarity=0.108 Sum_probs=126.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccC-CCCchHHH--HHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHHHHHH
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMF-PDSVMPLL--LQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLARAQVA 197 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~-P~~~~~~l--l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~Laql~ 197 (467)
-.+.+.+..|+..++.+.+..+...+ |...-+++ ..+. +....+..+|+.+|..+-=.-|.... .+.-.-..+.
T Consensus 117 ~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~-l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la 195 (421)
T PRK12798 117 ADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGN-LMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIA 195 (421)
T ss_pred HHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHH-HhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHH
Confidence 45888888999999999888765333 33333333 3333 45567889999999988777787422 2212334456
Q ss_pred HHcCChHHHHHHHhccc----cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIP----DIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~----~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
.+.|+.+.+...-.+.+ ..-+...++..++.++.+.++-.. ...+...+.+. . .+.-..+++.++.--+-
T Consensus 196 ~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~----d-~~~q~~lYL~iAR~Ali 269 (421)
T PRK12798 196 AQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFM----D-PERQRELYLRIARAALI 269 (421)
T ss_pred HhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhc----C-chhHHHHHHHHHHHHHH
Confidence 68899888776655554 222233445555555555543322 23366666543 1 12234467778888899
Q ss_pred CCChhHHHHHHHHHHHhcCC---HHHHHHHHHHhccCC---hhHHHHHHhcCCCCCCCCCcChhhhhh
Q 012265 274 HGREEDASHLFEELVKTHGS---IEALVGLVTTSAHVD---VDKAESYEKRLKPLPGLNGVDVDSLEK 335 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~pd---~~ala~Lv~a~~~~d---~~kA~~l~~~L~~~~~~~~vDvd~Le~ 335 (467)
.|+.+-|.-.-++++.+-.+ ....+.|..+.+.+. .+.+...+.+++. ..++.-|.+-|+.
T Consensus 270 ~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~-~~L~~~Dr~Ll~A 336 (421)
T PRK12798 270 DGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDR-DKLSERDRALLEA 336 (421)
T ss_pred cCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh-hhCChhhHHHHHH
Confidence 99999999999999987632 455667766665544 4444444444432 2356667766664
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.10 E-value=1.5e+02 Score=31.91 Aligned_cols=142 Identities=14% Similarity=-0.005 Sum_probs=82.9
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHH-----hcCChhHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHHcC-
Q 012265 135 DQARELVAALPDMFPDSVMPLLLQAAVLV-----RENKAGKAEELLGQFAE-------KLPDKSKIILLARAQVAAAAN- 201 (467)
Q Consensus 135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~-----~~~~~~~A~~~l~~~l~-------~~P~~~~~~~l~Laql~~~~g- 201 (467)
..|...++.+.+. ++..+....+.++. ...+.+.|+..|+.+++ +. .+.+ ..-+|.+|....
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a-~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPA-QYGLGRLYLQGLG 303 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCcc-ccHHHHHHhcCCC
Confidence 3455555544422 23333333333332 34567788888887766 22 1122 256788887643
Q ss_pred ----ChHHHHHHHhccccCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265 202 ----HPFIAAESLAKIPDIQHMPATVATLVALKERAG---DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH 274 (467)
Q Consensus 202 ----~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g---~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~ 274 (467)
++..|...|.++.+... |.....++.+|.... +...|..+|..|... -... .+..+|.++..-
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------G~~~-A~~~la~~y~~G 373 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------GHIL-AIYRLALCYELG 373 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------CChH-HHHHHHHHHHhC
Confidence 67778888888876654 444556777776544 456777777776642 1112 233356655331
Q ss_pred ----CChhHHHHHHHHHHHhc
Q 012265 275 ----GREEDASHLFEELVKTH 291 (467)
Q Consensus 275 ----g~~~~A~~~le~ll~~~ 291 (467)
-+...|..+|.++.+..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc
Confidence 26668888888888876
No 361
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.68 E-value=1.1e+02 Score=30.30 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhcccc----CCCChhHHHH---HHHHHHHc----CCHHHHHHHHHHHHHHHHHhccCC
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPD----IQHMPATVAT---LVALKERA----GDIDGAAAVLDSAIKWWLNAMTED 257 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~~p~~~~~---l~~ly~~~----g~~~~A~~~l~~al~~~~~~~~~~ 257 (467)
+.+..|..|++.|+.+.|.+++.+..+ +...-+++.. ++.+|... ...+.|..++++--.|.+.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr----- 180 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR----- 180 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh-----
Confidence 458889999999999999999887653 3344455443 34444322 2334555555554444332
Q ss_pred chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 258 ~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
+.+. .+ -|.+.+...++.+|..+|-..+..+.
T Consensus 181 NRlK-vY--~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 181 NRLK-VY--QGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hhHH-HH--HHHHHHHHHhHHHHHHHHHHHccccc
Confidence 1222 12 37777888999999999999988764
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.46 E-value=1.4e+02 Score=31.46 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=16.7
Q ss_pred HHHCCChhHHHHHHHHHHHhc
Q 012265 271 KLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 271 ~l~~g~~~~A~~~le~ll~~~ 291 (467)
|-...++.+|++++.-+++.+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD 235 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc
Confidence 444678889999999888877
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.24 E-value=49 Score=26.79 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 169 GKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 169 ~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
++|. .+-..++..++..+.+.++...-++++|+|++|....+... .|++.-.++..--+.|-.+++...+..
T Consensus 22 qEA~-tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 22 QEAN-TIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEWRLGLGSALESRLNR 93 (115)
T ss_pred HHHH-HHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5665 34567777776555555777778899999999999888763 677665555555566666655554443
No 364
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=70.02 E-value=14 Score=32.34 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc----------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD----------IQHMPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~----------~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
...+.-++..|+...|.+.|.-+.. +...|..+ ..+.-++..|++.+|...|..+..
T Consensus 79 i~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av-~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 79 IKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAV-KQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHH-HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHH-HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6677888899999999999988742 12255555 446667788999999999988874
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.00 E-value=23 Score=27.16 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=9.7
Q ss_pred hcCChhHHHHHHHHHHHhCCC
Q 012265 164 RENKAGKAEELLGQFAEKLPD 184 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~ 184 (467)
..++..+|+....+++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~ 38 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD 38 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC
Confidence 344444444444444444433
No 366
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.40 E-value=1.9e+02 Score=31.84 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccc---cCCCCchHHHHHHH---HH-------HhcCC-----hhHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPD---MFPDSVMPLLLQAA---VL-------VRENK-----AGKAEELLGQF 178 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~---~~P~~~~~~ll~a~---l~-------~~~~~-----~~~A~~~l~~~ 178 (467)
+....+-..-+|++.|+|++|.+..-..-. .++++....-+.+. .| +.... .+.-..+++++
T Consensus 58 r~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rm 137 (929)
T KOG2062|consen 58 RQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERM 137 (929)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHH
Confidence 333444556789999999999877654432 23333222111110 00 11111 11223444555
Q ss_pred HHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhc-cccCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhccC
Q 012265 179 AEKLPDKSKIILLARAQVAAAANHPFIAAESLAK-IPDIQHMPATVATLVALKERAGD-IDGAAAVLDSAIKWWLNAMTE 256 (467)
Q Consensus 179 l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~-~~~~~~~p~~~~~l~~ly~~~g~-~~~A~~~l~~al~~~~~~~~~ 256 (467)
+.+.-++... +..++ +.++..+++- ++. +++.+...+....+..+.....+ .+--.+++...+..|..-+
T Consensus 138 i~kcl~d~e~-~~aiG-ia~E~~rld~----ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~-- 209 (929)
T KOG2062|consen 138 IQKCLDDNEY-KQAIG-IAFETRRLDI----IEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLP-- 209 (929)
T ss_pred HHHhhhhhHH-HHHHh-HHhhhhhHHH----HHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC--
Confidence 5544333332 23333 3333333332 222 23333334444444444444433 4444456777777774432
Q ss_pred CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 257 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 257 ~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+. +..++.++.-..+.+.+.++++++++.+
T Consensus 210 ~PD----y~~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 210 SPD----YFSVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred CCC----eeeeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 233 2336888889999999999999999843
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.97 E-value=14 Score=31.59 Aligned_cols=57 Identities=7% Similarity=0.011 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhH
Q 012265 166 NKAGKAEELLGQFAE-KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPAT 222 (467)
Q Consensus 166 ~~~~~A~~~l~~~l~-~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~ 222 (467)
.+..+-+.+|+.+++ .+|+......+.||--+.+.++|+.++..+..+++.++ ++.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344577899999996 67775544557889899999999999999999988764 4433
No 368
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.80 E-value=78 Score=31.18 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=62.4
Q ss_pred hHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265 25 DIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL 104 (467)
Q Consensus 25 e~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 104 (467)
..++.++.|+++||-+|...+++..|...+..+ |.|. +...+..
T Consensus 97 sfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~t--------------g~~~~d~------------------ 140 (399)
T KOG1497|consen 97 SFEEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDT--------------GQKAYDV------------------ 140 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----Cccc--------------chhhhhh------------------
Confidence 445568899999999999999999887665432 1111 0000000
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--ccCCCCchH----HHHHHHHHHhcCChhHHHHHHHHH
Q 012265 105 ARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALP--DMFPDSVMP----LLLQAAVLVRENKAGKAEELLGQF 178 (467)
Q Consensus 105 ~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~--~~~P~~~~~----~ll~a~l~~~~~~~~~A~~~l~~~ 178 (467)
.+...++...+.+||..++..+|...+.+.. -.+-.|... .+..|.++-..+++-+|-+.|.++
T Consensus 141 ----------~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 141 ----------EQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred ----------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122345667888888888777777666432 222233322 334455555566666665555544
Q ss_pred H
Q 012265 179 A 179 (467)
Q Consensus 179 l 179 (467)
.
T Consensus 211 s 211 (399)
T KOG1497|consen 211 S 211 (399)
T ss_pred H
Confidence 3
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.74 E-value=30 Score=35.36 Aligned_cols=60 Identities=10% Similarity=-0.035 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQ-----H----MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~-----~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
..|.+++.-.|+|..|+++++.+--.. . +-.++..+|-.|+.++++.+|+..|...+.+-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999873100 0 22346678999999999999999999888654
No 370
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=67.21 E-value=20 Score=38.37 Aligned_cols=51 Identities=24% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
++++..++|.+|..+ .+.+|+-.+.+++-.||.+.+..++++|-+.|.++.
T Consensus 781 qlHve~~~W~eAFal----Ae~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFAL----AEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhh----hhhCccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 345566777777654 345666555556677777777777777766655543
No 371
>PF12854 PPR_1: PPR repeat
Probab=67.09 E-value=10 Score=23.67 Aligned_cols=24 Identities=13% Similarity=-0.115 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHhcc
Q 012265 190 LLARAQVAAAANHPFIAAESLAKI 213 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~ 213 (467)
+-.|...|.+.|+.++|..+|++.
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367778888888888888887753
No 372
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.83 E-value=35 Score=35.56 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=50.5
Q ss_pred HHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC-hHHHHHHHhccccCCC-
Q 012265 141 VAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH-PFIAAESLAKIPDIQH- 218 (467)
Q Consensus 141 ~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~-~~~A~~~L~~~~~~~~- 218 (467)
+..+...|++++..++.-+.-..+-+.+.+--++|.+++..||++++.+ ..-|.-...-+. .+.|..++.+.+...+
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLW-I~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLW-IYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhH-HhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 3344445666666665544433444447777788888888888887654 333443333333 7788888887776554
Q ss_pred ChhHHH
Q 012265 219 MPATVA 224 (467)
Q Consensus 219 ~p~~~~ 224 (467)
+|.++.
T Consensus 173 sp~Lw~ 178 (568)
T KOG2396|consen 173 SPKLWK 178 (568)
T ss_pred ChHHHH
Confidence 555543
No 373
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=65.65 E-value=1.4e+02 Score=29.27 Aligned_cols=57 Identities=19% Similarity=0.006 Sum_probs=41.5
Q ss_pred HHHHHHcCChHHHHHHHhccccCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQHM----PATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~~----p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
|.-+...|.+++|+..|+........ .-....++.++.+.|.++-|..+|+.....-
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 55567888999999999975432221 1234567899999999999999999876543
No 374
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=64.81 E-value=2.4e+02 Score=31.54 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHH--HHHHHH-HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL--LQAAVL-VRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~l--l~a~l~-~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
+.+..+..++...|.+++-...-..+...+|-.+..++ +...+. ...+...+++.++++++..+- ++..+ .-.++
T Consensus 114 ~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~-~v~iw-~e~~~ 191 (881)
T KOG0128|consen 114 AQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN-SVPIW-EEVVN 191 (881)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc-cchHH-HHHHH
Confidence 33444555666677777766666667777777776655 333333 344666677788888776542 22221 33333
Q ss_pred HHHH-------cCChHHHHHHHhccc
Q 012265 196 VAAA-------ANHPFIAAESLAKIP 214 (467)
Q Consensus 196 l~~~-------~g~~~~A~~~L~~~~ 214 (467)
.... .+.++.-..++++++
T Consensus 192 y~~~~~~~~~~~~d~k~~R~vf~ral 217 (881)
T KOG0128|consen 192 YLVGFGNVAKKSEDYKKERSVFERAL 217 (881)
T ss_pred HHHhccccccccccchhhhHHHHHHH
Confidence 3332 344555555555555
No 375
>PF13041 PPR_2: PPR repeat family
Probab=64.78 E-value=20 Score=24.24 Aligned_cols=25 Identities=8% Similarity=-0.158 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
-.+...|.+.|++++|..+|+++.+
T Consensus 7 n~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 7 NTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3344444455555555555554443
No 376
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.02 E-value=45 Score=31.56 Aligned_cols=73 Identities=18% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC-C------HHHHHHHHHHhcc
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG-S------IEALVGLVTTSAH 306 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p-d------~~ala~Lv~a~~~ 306 (467)
......+.+|.+|...|+.... .--...+...+|..|+..|++++|..+|+.+....- + .+.+..+..|+..
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR 230 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3455778888899888865332 222334556789999999999999999999987652 2 2445556666544
Q ss_pred C
Q 012265 307 V 307 (467)
Q Consensus 307 ~ 307 (467)
.
T Consensus 231 ~ 231 (247)
T PF11817_consen 231 L 231 (247)
T ss_pred h
Confidence 3
No 377
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=63.91 E-value=58 Score=28.50 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc-------cCCCCc--------------------------------hHHHHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPD-------MFPDSV--------------------------------MPLLLQAAV 161 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~-------~~P~~~--------------------------------~~~ll~a~l 161 (467)
....++..+..|+.++|...+++... .+|... ...+-.+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 45789999999999999999996531 112111 123445566
Q ss_pred HHhcCChhHHHHHHHHHHHh-------CCC-cHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 162 LVRENKAGKAEELLGQFAEK-------LPD-KSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~-------~P~-~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
+++.|+...|...|+.+-.. -|= .... .+..|.-++..|++.+|...|..+.+
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~-av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPA-AVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHH-HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 78899999999988865220 010 0112 26778899999999999999998864
No 378
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.60 E-value=16 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
+..+|.+-+..++|++|+.-|++++.+.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4457999999999999999999998753
No 379
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.42 E-value=2e+02 Score=30.35 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=72.0
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHcCChHHHHHHHh
Q 012265 135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS---KIILLARAQVAAAANHPFIAAESLA 211 (467)
Q Consensus 135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~---~~~~l~Laql~~~~g~~~~A~~~L~ 211 (467)
+.|.+.+......+|.+....++.+.++...|+.+.|+.+.+..++ +.-- ....+-+|-++.-+-+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5566666677788999888888888888888886667776666555 2211 1233567778888889999999888
Q ss_pred ccccCCC-ChhHHHHHH-HHHHH--------cCCHHHHHHHHHHHHHHH
Q 012265 212 KIPDIQH-MPATVATLV-ALKER--------AGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 212 ~~~~~~~-~p~~~~~l~-~ly~~--------~g~~~~A~~~l~~al~~~ 250 (467)
.+.+... +-+++..+. .+|++ .|+.+.|..+++......
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~ 376 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELL 376 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHH
Confidence 8876532 444433332 33322 235555555555444443
No 380
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=63.28 E-value=15 Score=35.11 Aligned_cols=59 Identities=10% Similarity=-0.021 Sum_probs=46.8
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
.+=..|++.++++.|..+.++++.+.+ +|.-+.--+.+|.++|-+.-|+.-++..+.+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 445578889999999999999988755 56556667888999999999988888766653
No 381
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.34 E-value=2.3e+02 Score=30.47 Aligned_cols=158 Identities=15% Similarity=0.002 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHhcccc-----CCCCchHHHHHHHHHHhc----C-ChhHHHHHHHHHHHhCCC
Q 012265 120 IYANRVLLLLHA-----NKMDQARELVAALPDM-----FPDSVMPLLLQAAVLVRE----N-KAGKAEELLGQFAEKLPD 184 (467)
Q Consensus 120 l~~n~all~l~~-----~~~~~A~~~~~~l~~~-----~P~~~~~~ll~a~l~~~~----~-~~~~A~~~l~~~l~~~P~ 184 (467)
.++..+.+++.- .+++.|...++..... .-.+..+..-.+.+|.+. . ++..|..++.++.+....
T Consensus 246 a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~ 325 (552)
T KOG1550|consen 246 AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP 325 (552)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc
Confidence 445556666554 4578888888876541 111233444455666553 2 677899999998887544
Q ss_pred cHHHHHHHHHHHHHHcC---ChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccCC
Q 012265 185 KSKIILLARAQVAAAAN---HPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTED 257 (467)
Q Consensus 185 ~~~~~~l~Laql~~~~g---~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~~~ 257 (467)
+ . .+.||.+|.... ++..|..+|..+....+.++++ .++.+|.. .-+...|..++.++.+.- .
T Consensus 326 ~--a-~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~-~la~~y~~G~gv~r~~~~A~~~~k~aA~~g------~ 395 (552)
T KOG1550|consen 326 D--A-QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY-RLALCYELGLGVERNLELAFAYYKKAAEKG------N 395 (552)
T ss_pred h--H-HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH-HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc------C
Confidence 3 3 378898887655 5789999999998766655544 45555543 236788888888887641 1
Q ss_pred chHHHHHHHHHHHHHH-CCChhHHHHHHHHHHHh
Q 012265 258 NKLSVIMQEAASFKLR-HGREEDASHLFEELVKT 290 (467)
Q Consensus 258 ~~~~~ll~~la~~~l~-~g~~~~A~~~le~ll~~ 290 (467)
+ .....++.++.- .+++..+.-.+...-+.
T Consensus 396 ~---~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 396 P---SAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred h---hhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 1 112223444422 27777666655554443
No 382
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=61.95 E-value=2.6 Score=44.95 Aligned_cols=64 Identities=23% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-ccCCCC--chHHHHHHHHHHhcCChhHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALP-DMFPDS--VMPLLLQAAVLVRENKAGKAEEL 174 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~-~~~P~~--~~~~ll~a~l~~~~~~~~~A~~~ 174 (467)
.|+..|.....+-.+.+.+..|++++|...+.... ..-|.. ...+.+.|.++...|++-+|...
T Consensus 54 ~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~ 120 (536)
T PF04348_consen 54 QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARE 120 (536)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34444554455555666666666666666655311 111111 12233455555555555555443
No 383
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.75 E-value=48 Score=35.39 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCChhHHHHHHHHH
Q 012265 265 QEAASFKLRHGREEDASHLFEEL 287 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~l 287 (467)
..+|.+.+..|++..|.+.|.++
T Consensus 670 ~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 670 RQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHhhcccchhHHHHHHhh
Confidence 33444444444554444444443
No 384
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.17 E-value=1.6e+02 Score=28.13 Aligned_cols=158 Identities=11% Similarity=-0.015 Sum_probs=96.1
Q ss_pred HHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----c
Q 012265 129 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA----A 200 (467)
Q Consensus 129 l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~----~ 200 (467)
...+.+..+...+...... .........+..+.. ..+..+|...++...+. .+... .+.|+.+|.. .
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g~~~a-~~~lg~~~~~G~gv~ 126 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEA-LFNLGLMYANGRGVP 126 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--ccHHH-HHhHHHHHhcCCCcc
Confidence 3445567777777665541 122445555655542 44567899998855543 34443 4789999986 4
Q ss_pred CChHHHHHHHhccccCCCChh--HHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265 201 NHPFIAAESLAKIPDIQHMPA--TVATLVALKERAG-------DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK 271 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~~p~--~~~~l~~ly~~~g-------~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~ 271 (467)
.++.+|..+|+++.+..+.++ ....++.+|..-. +...|...|.++... . .......+|.+|
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~------~---~~~a~~~lg~~y 197 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL------G---NPDAQLLLGRMY 197 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh------c---CHHHHHHHHHHH
Confidence 599999999999987665443 2445666665532 222455555554432 1 112334467666
Q ss_pred HH----CCChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265 272 LR----HGREEDASHLFEELVKTHGSIEALVGLV 301 (467)
Q Consensus 272 l~----~g~~~~A~~~le~ll~~~pd~~ala~Lv 301 (467)
.. ..++++|...|.++.+... ..+...+.
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~ 230 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG 230 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 44 2378899999999998765 44444443
No 385
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=60.12 E-value=11 Score=31.70 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=31.5
Q ss_pred hhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhh
Q 012265 24 DDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNL 75 (467)
Q Consensus 24 ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl 75 (467)
||+.+-|.. +|.+++- .-+.+.|..+|++++...|++..+++.+..|+
T Consensus 73 DeY~EaLRD--fq~~~ia--Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 73 DEYSEALRD--FQCSWIA--KLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHH--HHHHHHT--TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHH--hhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 444444443 3445443 44558999999999999999999888766665
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.70 E-value=33 Score=33.30 Aligned_cols=57 Identities=12% Similarity=-0.007 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
..+..+...|.+.+|++++++++..+|=+.... ..|-++|...|+--.|+..|+++-
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~n-k~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDN-KGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHH-HHHHHHHHHhccchhhhhHHHHHH
Confidence 344556778888888888888888888766554 667778888888888888877764
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=59.41 E-value=2.7e+02 Score=30.40 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=54.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
+...++.+.|..+....|-+++...+|+-|.. ..+-.|...+|+.++-+.+ +|..
T Consensus 442 l~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAa---------------------FFLLag~l~dAv~V~~~~l----~D~q 496 (631)
T PF12234_consen 442 LSNDFTEPRWRTAALKNAYALLSKHRYEYAAA---------------------FFLLAGSLKDAVNVCLRQL----NDPQ 496 (631)
T ss_pred HhhcCCChHHHHHHHHhHHHHHhcccHHHHHH---------------------HHHhcccHHHHHHHHHHHc----cChh
Confidence 33445556666666666777777666665422 1223456777777665544 2333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHh-ccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 188 IILLARAQVAAAANHPFIAAESLA-KIPDIQH-MPATVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~-~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
.+ +.++++|...+-. .-..+|+ .++.... .-+-+ ....+|-..|+++.|+..|-.
T Consensus 497 LA-i~i~Rl~e~d~gp-~~~~ll~~~vLp~a~~~~d~w-l~s~~~W~L~~~~~ai~~Li~ 553 (631)
T PF12234_consen 497 LA-IAIARLYEGDNGP-VLKKLLEEHVLPEAIKEGDRW-LASWAFWMLGDYDEAIRALIS 553 (631)
T ss_pred HH-HHHHHHHcCCCch-HHHHHHHHhhhccccccCCHH-HHHHHHHhcCCHHHHHHHHhc
Confidence 33 6666776543211 1112221 1111110 11112 334455567778777766543
No 388
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=58.94 E-value=1.7e+02 Score=30.35 Aligned_cols=80 Identities=9% Similarity=-0.019 Sum_probs=44.0
Q ss_pred cccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHH
Q 012265 145 PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVA 224 (467)
Q Consensus 145 ~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~ 224 (467)
++.+|.+...++.+..-+..++.+++-.++++++..-+|--+.++.+.+ .--+..++|..-..+|.+++.-..+.++|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~-s~ELA~~df~svE~lf~rCL~k~l~ldLW~ 113 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYM-SGELARKDFRSVESLFGRCLKKSLNLDLWM 113 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHh-cchhhhhhHHHHHHHHHHHHhhhccHhHHH
Confidence 4456777666666666666667777777777777766665444432222 111234556655555665554333445554
Q ss_pred H
Q 012265 225 T 225 (467)
Q Consensus 225 ~ 225 (467)
+
T Consensus 114 l 114 (660)
T COG5107 114 L 114 (660)
T ss_pred H
Confidence 3
No 389
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.84 E-value=15 Score=21.54 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 223 VATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 223 ~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
+..+...|.+.|+.++|..+|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3455666667777777766666554
No 390
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.96 E-value=56 Score=35.15 Aligned_cols=95 Identities=14% Similarity=0.008 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch----HHH--HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVM----PLL--LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~----~~l--l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
.+..|.|--++...+|.-+.+.|..-+...|.+.. +.+ ..+..|....+.++|.+.++++-+.+|.+.- ..+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l-~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL-CQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH-HHHH
Confidence 46678888899999999999999987777765433 222 3344567888999999999999998888754 4577
Q ss_pred HHHHHHHcCChHHHHHHHhccc
Q 012265 193 RAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~ 214 (467)
..++....|+-++|+.++..+.
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 7888889999999999988774
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=57.94 E-value=34 Score=21.84 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHH--HHHHhcC
Q 012265 264 MQEAASFKLRHGREEDASHLFE--ELVKTHG 292 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le--~ll~~~p 292 (467)
+..+|..+..+|++++|+.+|. -+...++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4457888899999999999944 6665554
No 392
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=57.34 E-value=25 Score=20.97 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=20.8
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 267 AASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
+...+.+.|++++|..+|.++.+..
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4456889999999999999988654
No 393
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.14 E-value=77 Score=36.91 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=91.0
Q ss_pred HHHHHHhcCChhHHHH------HHHH-HHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC-----CC-ChhH--
Q 012265 158 QAAVLVRENKAGKAEE------LLGQ-FAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI-----QH-MPAT-- 222 (467)
Q Consensus 158 ~a~l~~~~~~~~~A~~------~l~~-~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~~-~p~~-- 222 (467)
.++..+.++.+.+|.+ ++.. +-..+|+... .+..|+.++-..|++++|+.+=.++.-+ .. .|..
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~-~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVAS-KYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHH-HHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 4445566777877766 5553 3445777655 4578999999999999999987776421 11 2332
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 223 -VATLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 223 -~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
+..++.+....++...|...+..+...+.=..+ ..+........++.+++..++++.|+.+++.+++..
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345666666777888899988888776532222 233444445566777778899999999999999865
No 394
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=56.62 E-value=41 Score=28.76 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=19.6
Q ss_pred HHHHHHhCChHHHHHHHHHHhccCCCchHHHH
Q 012265 38 AYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69 (467)
Q Consensus 38 A~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~ 69 (467)
|--+...|..++-.++..+.....+-+..-++
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWv 40 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWV 40 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHH
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCcccccee
Confidence 44566778888888888888776554433333
No 395
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.19 E-value=1.9e+02 Score=28.78 Aligned_cols=89 Identities=12% Similarity=-0.002 Sum_probs=49.2
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--------------C-------
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--------------P------- 183 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--------------P------- 183 (467)
.....+..+..+-++....++..+|+-..+++++|.- ..--..+|+++++++++.. +
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence 3344444444555555666677788777776666542 2223446666666665421 0
Q ss_pred ---CcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 184 ---DKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 184 ---~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
+-...+.-.||....++|+..+|+..++.+..
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 00112333456666677777777777776653
No 396
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=55.55 E-value=1.3e+02 Score=33.95 Aligned_cols=112 Identities=15% Similarity=0.096 Sum_probs=74.1
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGD---IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 268 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~---~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la 268 (467)
.|-++|...|+++.|..++.++- +.+.+.....|+.++.+.+. ..++....+++...+...+.... .+...+
T Consensus 712 RLL~sy~~~g~~erA~glwnK~Q-V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~----~~~~~a 786 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQ-VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTC----YYEGYA 786 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCc-CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchH----hhhhhH
Confidence 36679999999999999999976 55677778888888887653 34555555555443322111111 223334
Q ss_pred HHHHHCCChhHHHHHHHHHHHhcC--CHHHHHHHHHHhccCC
Q 012265 269 SFKLRHGREEDASHLFEELVKTHG--SIEALVGLVTTSAHVD 308 (467)
Q Consensus 269 ~~~l~~g~~~~A~~~le~ll~~~p--d~~ala~Lv~a~~~~d 308 (467)
.+..+....+.|.++|+++-+..+ ..+.+.+++.+....|
T Consensus 787 ~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 787 FFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 555555566688899999888874 3566777777766555
No 397
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=55.26 E-value=47 Score=21.57 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
..||.+-+..++|++|+.-|+++++
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 398
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.94 E-value=26 Score=20.93 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 223 VATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 223 ~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
+..+...|.+.|++++|..+|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677778888888888888887654
No 399
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=54.65 E-value=1.3e+02 Score=25.24 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHHhccCCchHHH
Q 012265 193 RAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDS---------AIKWWLNAMTEDNKLSV 262 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~---------al~~~~~~~~~~~~~~~ 262 (467)
+...+...+.+...+..|+.++..+. ++.+...++.+|... +....+..|.. ++..-.+..
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~~-------- 83 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKAK-------- 83 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHcC--------
Q ss_pred HHHHHHHHHHHCCChhHHHHHH
Q 012265 263 IMQEAASFKLRHGREEDASHLF 284 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~l 284 (467)
++..+..++.+.|.+++|+.++
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~ 105 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTL 105 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHH
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.98 E-value=91 Score=24.00 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=27.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHH
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 283 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~ 283 (467)
.+| .+++.++|+..+++++....+ .+..-.++-.+..+|...|+|.+++..
T Consensus 15 kLY-~~~~~~~Al~~W~~aL~k~~~----~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 15 KLY-HQNETQQALQKWRKALEKITD----REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHh-ccchHHHHHHHHHHHHhhcCC----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 556677777777777664321 112222334445666667777666543
No 401
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.89 E-value=1.1e+02 Score=29.53 Aligned_cols=24 Identities=8% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHh
Q 012265 267 AASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
+|.+++..|+|..-..++.++...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHH
Confidence 688888888888888888777764
No 402
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.71 E-value=54 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccc
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDM 147 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~ 147 (467)
..+..+++.+..|++..|++.+.+..+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3456677777777777777777766544
No 403
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=53.69 E-value=1.5e+02 Score=31.78 Aligned_cols=107 Identities=14% Similarity=0.054 Sum_probs=63.8
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHH-HHHhCCCcHHHHHHH------HHHHH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQ-FAEKLPDKSKIILLA------RAQVA 197 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~-~l~~~P~~~~~~~l~------Laql~ 197 (467)
.+++...+....+.-.+...+..+|.+..++...+..+...|..-.+...+.+ +....|++...+ .. ++++.
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 152 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL-GHLIRFYQLGRYL 152 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH-hhHHHHHHHHHHH
Confidence 44444455555666666677777888877766665555445555544444433 555666665443 33 36777
Q ss_pred HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKER 232 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~ 232 (467)
...|+..++...++++.++.+ ++.+...++....+
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 777888888888877776554 45555444444333
No 404
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.35 E-value=3.4e+02 Score=29.77 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=68.6
Q ss_pred hcCChhHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265 164 RENKAGKAEELLGQFAEKLPDKS---KIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~---~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
...+.+.|..++.++.....-+. ..+.-.+|.-.+..+.-.+|...+..+.....+..++...+.+.+..++.+.+.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHH
Confidence 45566778877776644443221 122233343333333366777777776543334445555555666788887776
Q ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 241 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
..+..+-.-- . .. ......+|..+...|+.++|..+|+++..
T Consensus 333 ~~i~~L~~~~---~---~~-~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEA---K---EK-DEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhh---c---cC-HhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6666532211 1 11 11233468888889999999999999854
No 405
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=53.01 E-value=1.7e+02 Score=30.30 Aligned_cols=92 Identities=14% Similarity=0.176 Sum_probs=53.4
Q ss_pred HHHHHHcCChHHHHHHHhccccCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQ----HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~----~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
+.......+.+++..+|-++-... -.|-+...++..|...|..+.++.++..=+.+ ...+++..+ ..+-.
T Consensus 73 vn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y--GiF~D~~s~----n~Lmd 146 (429)
T PF10037_consen 73 VNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY--GIFPDNFSF----NLLMD 146 (429)
T ss_pred HhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc--ccCCChhhH----HHHHH
Confidence 444444445556666666553221 12334456778888888888888888764432 112221111 11345
Q ss_pred HHHHCCChhHHHHHHHHHHHhc
Q 012265 270 FKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.++..|++..|+.+...+..++
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhh
Confidence 5778888888888888777654
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.39 E-value=1.8e+02 Score=29.67 Aligned_cols=121 Identities=16% Similarity=0.007 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHhccCCchH
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDIQ----HMPATVATLVALKERAGDIDGAAAVLDSAIKWW---LNAMTEDNKL 260 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~---~~~~~~~~~~ 260 (467)
.++.-+++-|+..|+++.|+..|.++-+.- +.-.++..+..+-..+|++.....+..+|.+.- .+....-+.-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 345778999999999999999999965421 122334444444445688888888888776541 0100000111
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHhc--------CCHHHHHHHHHHhccCChh
Q 012265 261 SVIMQEAASFKLRHGREEDASHLFEELVKTH--------GSIEALVGLVTTSAHVDVD 310 (467)
Q Consensus 261 ~~ll~~la~~~l~~g~~~~A~~~le~ll~~~--------pd~~ala~Lv~a~~~~d~~ 310 (467)
+-...|...+..++|..|+..|-.+.-.. |...++.+..-|.+.||..
T Consensus 231 --l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~ 286 (466)
T KOG0686|consen 231 --LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQ 286 (466)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHH
Confidence 12224666777789999998885544322 1234455565666777753
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.39 E-value=1.3e+02 Score=24.68 Aligned_cols=76 Identities=11% Similarity=-0.014 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265 167 KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA 246 (467)
Q Consensus 167 ~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~a 246 (467)
..++|..+. ..++..++..+.+.++....++++|+|++|+. .-.- ...|++.-.++..--+.|-.+++...|.+.
T Consensus 21 cH~EA~tIa-~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl--~~~~--~~~pdL~p~~AL~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIA-DWLEQEGEMEEVVALIRLSSLMNRGDYQEALL--LPQC--HCYPDLEPWAALCAWKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHH-HHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH--HHTT--S--GGGHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH--hccc--CCCccHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345666544 46666666555555777778888888888822 1111 125666555555556777777777777754
Q ss_pred H
Q 012265 247 I 247 (467)
Q Consensus 247 l 247 (467)
.
T Consensus 96 a 96 (116)
T PF09477_consen 96 A 96 (116)
T ss_dssp C
T ss_pred H
Confidence 3
No 408
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.02 E-value=1.8e+02 Score=31.84 Aligned_cols=60 Identities=10% Similarity=-0.034 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhcc-CChhHHHHHHhcCCCCC
Q 012265 257 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAH-VDVDKAESYEKRLKPLP 323 (467)
Q Consensus 257 ~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~-~d~~kA~~l~~~L~~~~ 323 (467)
|.....+++.+|..+.....+++|.++|.+--.. .+++-|+-+ .+++.-+.+...||.-.
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~LE~la~~Lpe~s 852 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGELEVLARTLPEDS 852 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhhHHHHHHhcCccc
Confidence 3456677888888888888899999888765432 233333322 22344555666666543
No 409
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=50.90 E-value=5.6 Score=33.91 Aligned_cols=52 Identities=10% Similarity=-0.043 Sum_probs=36.5
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
...+.....+..|+.++..++.....++..|+.+|++.++++.....|+...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~ 69 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN 69 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc
Confidence 3456777778888888876654434456888899998888888888877543
No 410
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=50.87 E-value=45 Score=38.00 Aligned_cols=95 Identities=17% Similarity=0.020 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-----ChhHHHHHHHHHHH---cCC---HHHHHHHHHHHHHHHHHhccCCch
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-----MPATVATLVALKER---AGD---IDGAAAVLDSAIKWWLNAMTEDNK 259 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-----~p~~~~~l~~ly~~---~g~---~~~A~~~l~~al~~~~~~~~~~~~ 259 (467)
++.-..++....|+.|+..|+++.+.=+ ..+....-+.++.+ +|+ +++|+..|+..- ..+. ..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~ 552 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-----GGVG-AP 552 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-----CCCC-Cc
Confidence 6667788889999999999999975311 12222222334433 233 344444444321 1111 11
Q ss_pred HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 260 LSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+ . ++.-|-+|.++|+++|-++.|.-+++.+|+
T Consensus 553 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 553 L-E-YLGKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred h-H-HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 2 2 333477889999999999999999999864
No 411
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.82 E-value=1.8e+02 Score=28.83 Aligned_cols=51 Identities=14% Similarity=-0.078 Sum_probs=33.9
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
...++.+..+-++.-..+++.+|+...+. ..||.- +.--..+|..+|++++
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~Ay-vLLAEE--Ea~Ti~~AE~l~k~AL 243 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAY-VLLAEE--EATTIVDAERLFKQAL 243 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHH-Hhhhhh--hhhhHHHHHHHHHHHH
Confidence 34567777777888888899999876543 444432 2344667777777765
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.59 E-value=1.5e+02 Score=31.79 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=54.5
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHH
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA 241 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~ 241 (467)
.++.|+++.|.++..++ ++..-+ -.|+.+.+..|++..|.+++.++.+. ..|..+|...|+.+.-..
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw-~~Lg~~al~~~~l~lA~EC~~~a~d~-------~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKW-RQLGDAALSAGELPLASECFLRARDL-------GSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHH-HHHHHHHhhcccchhHHHHHHhhcch-------hhhhhhhhhcCChhHHHH
Confidence 45667777776665442 222223 56788888888888888888776542 123344555565543222
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265 242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 287 (467)
Q Consensus 242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~l 287 (467)
+-..+.. .. ..++ ++ ..++..|++++.++++.+-
T Consensus 714 la~~~~~----~g--~~N~--AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKK----QG--KNNL--AF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHh----hc--ccch--HH----HHHHHcCCHHHHHHHHHhc
Confidence 2221111 01 1111 11 2356788888888777553
No 413
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.45 E-value=2.6e+02 Score=27.20 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHhcCChhHHHHHHHHHHHhC--------CCc--HH---HHHHHHHHHHHHcCChHHHHHHHhccccCC-C-ChhHHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKL--------PDK--SK---IILLARAQVAAAANHPFIAAESLAKIPDIQ-H-MPATVAT 225 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~--------P~~--~~---~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~-~p~~~~~ 225 (467)
.++...++..|+..+++.++.- |.. .+ .+...=.|.+.+.|++.+++.+.-+..+.. . -|.++..
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL 123 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 3455566666666666655432 110 00 112333567778899999988877665543 2 4566767
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-----HHCCChhHHHHHH
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK-----LRHGREEDASHLF 284 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~-----l~~g~~~~A~~~l 284 (467)
-+.+|.+.+......++-. -|-+.+. +..+.. +..++.+| +=+|.+++|.++.
T Consensus 124 CILLysKv~Ep~amlev~~----~WL~~p~-Nq~lp~-y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVAS----AWLQDPS-NQSLPE-YGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhcCHHHHHHHHH----HHHhCcc-cCCchh-hHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7889999998876654433 3323222 211111 23344444 4579999998877
No 414
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.30 E-value=48 Score=32.25 Aligned_cols=58 Identities=16% Similarity=0.014 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
...+..|+..|.+.+|+++-++++.+++ +...+..|..+|...|+--+|...++....
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4557889999999999999999998876 556677888999999999888888876543
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.13 E-value=41 Score=19.67 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=13.1
Q ss_pred ChhHHHHHHHHHHHhCCCcHH
Q 012265 167 KAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 167 ~~~~A~~~l~~~l~~~P~~~~ 187 (467)
+.+.|..+|++++...|.+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 2 DIERARKIYERALEKFPKSVE 22 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChH
Confidence 455666667777766665544
No 416
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.71 E-value=2.6e+02 Score=27.00 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHhccccCCCCchHHHHHHHHHHh-cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChH-HHHHH
Q 012265 132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVR-ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF-IAAES 209 (467)
Q Consensus 132 ~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~-~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~-~A~~~ 209 (467)
.+-..|.++.+.++..+|.+..++-+.-.++-. ..+..+-+..|.++++.+|.+-..++ ..--+....|++. .-+..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWH-HRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWH-HRRVIVELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHH-HHHHHHHHhcCcccchHHH
Confidence 346789999999999999998887776666533 34456778899999999999876653 3344555567776 56667
Q ss_pred HhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 210 LAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 210 L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.+.+++.+. +-.++.....+...-+.++.-+++....++.
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 777776553 5566777777777778888777777777654
No 417
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.67 E-value=1.5e+02 Score=29.67 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC--ChhHHHHHHHHHH
Q 012265 170 KAEELLGQFAEKLPDK---SKIILLARAQVAAAANHPFIAAESLAKIPDIQH--MPATVATLVALKE 231 (467)
Q Consensus 170 ~A~~~l~~~l~~~P~~---~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly~ 231 (467)
+...+|..++..-|+- ..++ ..+|.|+-.+|.+++.+.+|+.++...- ...+.-.++.++.
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYW-IC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYW-ICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3444555555555542 2233 7788888888888888999988875443 3345555566654
No 418
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.28 E-value=83 Score=25.52 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 202 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~ 202 (467)
+..+.+.+-+|++..|++.+.+..+. .+++...++.-|+....+||
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~-~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKL-SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC
Confidence 45566667789999999988888655 34444444555666666664
No 419
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.93 E-value=3.2e+02 Score=27.31 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=83.5
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhc--------------------------CChhHHHHHHHHHHHh-CCCcHH
Q 012265 135 DQARELVAALPDMFPDSVMPLLLQAAVLVRE--------------------------NKAGKAEELLGQFAEK-LPDKSK 187 (467)
Q Consensus 135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~--------------------------~~~~~A~~~l~~~l~~-~P~~~~ 187 (467)
++|+.+-.-+...+|+.++++=+.+.++++. +-.+++..++.+++.. .|.--
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY- 291 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY- 291 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH-
Confidence 6777777777888998888765555443321 1124556666666554 23321
Q ss_pred HHHHHHHHHHHH-----cCChHHHHHHHhccccCCCChhHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265 188 IILLARAQVAAA-----ANHPFIAAESLAKIPDIQHMPATV-ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 261 (467)
Q Consensus 188 ~~~l~Laql~~~-----~g~~~~A~~~L~~~~~~~~~p~~~-~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 261 (467)
.+.-.++.++.. .-++..-..+|.-+..+.++|-+- +.-+.+-+..| .+.++..++-.... +.-..+.
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~G-p~agLa~ve~L~~~-----~~L~gy~ 365 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREG-PAAGLAMVEALLAR-----PRLDGYH 365 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhh-HHhHHHHHHHhhcc-----ccccccc
Confidence 122233333332 234444455555555555555432 22233333333 44555555443321 0011222
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 262 VIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
.++..-|.++.+.|+.++|...|++++...++.
T Consensus 366 ~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 366 LYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred ccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 234445899999999999999999999988663
No 420
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=45.41 E-value=1.7e+02 Score=31.00 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc-ccCCCC-chHHHHHHHHHHhcCChhHHHHHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALP-DMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQF 178 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~-~~~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~ 178 (467)
.+--+.+++..|+.++|..++.++. .+.|.. .+-.++.|.+....+++..|...|.+.
T Consensus 66 ~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~ 125 (604)
T COG3107 66 LLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKL 125 (604)
T ss_pred HHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence 3334445555666666666666554 222221 123445555555556666665555544
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.26 E-value=1.6e+02 Score=26.74 Aligned_cols=51 Identities=10% Similarity=-0.034 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA 241 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~ 241 (467)
...+-++++.|.+++|.++|+++.....++.....|..+-.+.+.+...+.
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccccccHHHH
Confidence 445668888999999999999888633344445566666655555544433
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.77 E-value=1.5e+02 Score=26.94 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHH
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSF 68 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~ 68 (467)
..|..|...|....|.+++|.++++.+.. +|+.....
T Consensus 111 ~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r 147 (200)
T cd00280 111 KLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLR 147 (200)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHH
Confidence 36788889999999999999999999998 66655443
No 423
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.59 E-value=74 Score=24.18 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHhcCCH
Q 012265 277 EEDASHLFEELVKTHGSI 294 (467)
Q Consensus 277 ~~~A~~~le~ll~~~pd~ 294 (467)
|.+|+++|.+++...||.
T Consensus 29 Y~~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 345555555566555653
No 424
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.03 E-value=43 Score=25.45 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
+.+...++.|.-+-..|++.+|+..|+..+..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35566788899999999999999999988753
No 425
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.46 E-value=5.3e+02 Score=29.14 Aligned_cols=181 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
.+.|..+|++. ++.++ .+.+++|..+...++|..|.++|-+.++... ...+.++..+..-.++
T Consensus 374 y~kAL~~ar~~-------p~~le----~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE-EVaLKFl~~~~~~~L~----- 436 (911)
T KOG2034|consen 374 FDKALEIARTR-------PDALE----TVLLKQADFLFQDKEYLRAAEIYAETLSSFE-EVALKFLEINQERALR----- 436 (911)
T ss_pred HHHHHHhccCC-------HHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH-HHHHHHHhcCCHHHHH-----
Q ss_pred hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265 85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH-ANKMDQARELVAALPDMFPDSVMPLLLQAAVLV 163 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~-~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~ 163 (467)
.-..++++++..-+.- |...+..-..-++|. .|..+ ..+|....-+
T Consensus 437 ~~L~KKL~~lt~~dk~---------------q~~~Lv~WLlel~L~~Ln~l~----------~~de~~~en~-------- 483 (911)
T KOG2034|consen 437 TFLDKKLDRLTPEDKT---------------QRDALVTWLLELYLEQLNDLD----------STDEEALENW-------- 483 (911)
T ss_pred HHHHHHHhhCChHHHH---------------HHHHHHHHHHHHHHHHHhccc----------ccChhHHHHH--------
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVL 243 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l 243 (467)
.-.+++-.+.+..++..+-+... +-+..++....|+.++....=.-+.+ +..++..+.+++.+++|++.+
T Consensus 484 -~~~~~~~~re~~~~~~~~~~~~n--retv~~l~~~~~~~e~ll~fA~l~~d-------~~~vv~~~~q~e~yeeaLevL 553 (911)
T KOG2034|consen 484 -RLEYDEVQREFSKFLVLHKDELN--RETVYQLLASHGRQEELLQFANLIKD-------YEFVVSYWIQQENYEEALEVL 553 (911)
T ss_pred -HHHHHHHHHHHHHHHHhhHHhhh--HHHHHHHHHHccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 012265 244 DS 245 (467)
Q Consensus 244 ~~ 245 (467)
..
T Consensus 554 ~~ 555 (911)
T KOG2034|consen 554 LN 555 (911)
T ss_pred Hh
No 426
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.25 E-value=1.8e+02 Score=27.16 Aligned_cols=85 Identities=18% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcC
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAG 234 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g 234 (467)
.++.|.-+...+++++|+..+-.- ...|+.. -...++++.+|+...|..++......-..+..+..+..+ +..+
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~~----~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSHP-SLIPWFP----DKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCCC-CCCcccH----HHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcC
Confidence 456666667778888888877432 1112222 234566666888888888888765322234333222222 5667
Q ss_pred CHHHHHHHHHH
Q 012265 235 DIDGAAAVLDS 245 (467)
Q Consensus 235 ~~~~A~~~l~~ 245 (467)
...+|..+.+.
T Consensus 155 ~v~EAf~~~R~ 165 (226)
T PF13934_consen 155 LVTEAFSFQRS 165 (226)
T ss_pred CHHHHHHHHHh
Confidence 77776665554
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.24 E-value=35 Score=30.83 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=33.1
Q ss_pred HHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 206 AAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 206 A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
.++..++++...++|.++..++.++...|+.++|...+.++...|+
T Consensus 130 ~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444455556777777888888888888888888888877663
No 428
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.82 E-value=1.4e+02 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
-.++.||-+...|++.+|+..|+.+|..
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3688999999999999999999999865
No 429
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=42.64 E-value=1.3e+02 Score=25.85 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
++-.|.-.+..|++.-|..++..++..+|++..+ +..++++|...|
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~a-r~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEA-RQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHH
Confidence 3444445566777777777777777777776653 456666655444
No 430
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.57 E-value=4.4e+02 Score=27.96 Aligned_cols=72 Identities=11% Similarity=0.011 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHhcCCH
Q 012265 223 VATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR-EEDASHLFEELVKTHGSI 294 (467)
Q Consensus 223 ~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~-~~~A~~~le~ll~~~pd~ 294 (467)
...++.++...|+...|..+|.-.+..+.....+.-.+.-++.++|.++...|. ..++..++.++.....|.
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 345688899999999999999988876544333322344567889999998887 999999999999877554
No 431
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.21 E-value=5.2e+02 Score=28.68 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=66.8
Q ss_pred HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHH
Q 012265 127 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIA 206 (467)
Q Consensus 127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A 206 (467)
-++..|+..+|.++-.++. =|+- ..+.++...+...+++++-++ +......-.+ +.=.+...+.+|+.++|
T Consensus 693 ~li~~g~~k~a~ql~~~Fk--ipdK-r~~wLk~~aLa~~~kweeLek----fAkskksPIG--y~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK--IPDK-RLWWLKLTALADIKKWEELEK----FAKSKKSPIG--YLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHccchHHHHHHHHhcC--Ccch-hhHHHHHHHHHhhhhHHHHHH----HHhccCCCCC--chhHHHHHHhcccHHHH
Confidence 4556788888877766653 2333 345566667778888885443 3332211112 23456788899999999
Q ss_pred HHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 012265 207 AESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLD 244 (467)
Q Consensus 207 ~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~ 244 (467)
...+-++..+ . ..+.+|.+.|++.+|.++--
T Consensus 764 ~KYiprv~~l------~-ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 764 KKYIPRVGGL------Q-EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhhhccCCh------H-HHHHHHHHhccHHHHHHHHH
Confidence 9998887542 2 56788899999998877543
No 432
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.17 E-value=2.9e+02 Score=31.38 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=51.7
Q ss_pred HHHcCChHHHHHHHhccccCCC--ChhHHHHHHHHHHHc--------CCHHHHHHH--HHHHHHHHHHhc---c----CC
Q 012265 197 AAAANHPFIAAESLAKIPDIQH--MPATVATLVALKERA--------GDIDGAAAV--LDSAIKWWLNAM---T----ED 257 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~--~p~~~~~l~~ly~~~--------g~~~~A~~~--l~~al~~~~~~~---~----~~ 257 (467)
|+.....+-++..|+.++.... .+-+...+..+|.+. ++-+++.+. -+++..+..... + ..
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~ 680 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER 680 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh
Confidence 4566667777777777764332 333444455555442 222344444 223322211100 0 01
Q ss_pred chHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 258 ~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
-+...++.+.+.++.+.|++++|+.+|-..+.
T Consensus 681 ~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 681 LNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred ccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 11245677788888999999999999988875
No 433
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=42.04 E-value=50 Score=32.38 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=45.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 159 AAVLVRENKAGKAEELLGQFAEKL--PDKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 159 a~l~~~~~~~~~A~~~l~~~l~~~--P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
|..+...+..+.|+..|+..+... |.+--..+|.+|+++...|.++-|..+|+.+.+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455678889999999999765533 333335678999999999999999999998863
No 434
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.89 E-value=4.2e+02 Score=30.53 Aligned_cols=109 Identities=11% Similarity=0.135 Sum_probs=63.6
Q ss_pred CChHHHHHHHhcccc-CCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265 201 NHPFIAAESLAKIPD-IQHMPATVATLVALKERAG--DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 277 (467)
Q Consensus 201 g~~~~A~~~L~~~~~-~~~~p~~~~~l~~ly~~~g--~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~ 277 (467)
++.+.-+..+..+++ ......++..+...|.+.+ ++++|+.++.+.... .......++..+. =.
T Consensus 792 ~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~------~~~~ae~alkyl~-------fL 858 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE------DPESAEEALKYLC-------FL 858 (928)
T ss_pred cHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc------ChHHHHHHHhHhe-------ee
Confidence 344555555555553 2234445566777777777 777777777665432 0111111221111 12
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHhcCCCCCC
Q 012265 278 EDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLKPLPG 324 (467)
Q Consensus 278 ~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l~~~L~~~~~ 324 (467)
-++-.+|+-+|..+. --++.+|+-.++.||..-.-++..|..++.
T Consensus 859 vDvn~Ly~~ALG~YD--l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~ 903 (928)
T PF04762_consen 859 VDVNKLYDVALGTYD--LELALMVAQQSQKDPKEYLPFLQELQKLPP 903 (928)
T ss_pred ccHHHHHHHHhhhcC--HHHHHHHHHHhccChHHHHHHHHHHHhCCh
Confidence 256677777777652 247888999999999887777776665544
No 435
>PRK10316 hypothetical protein; Provisional
Probab=41.75 E-value=2.8e+02 Score=25.49 Aligned_cols=124 Identities=15% Similarity=0.045 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCC--chHHHHHHHHHHh--cCChh--HHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDS--VMPLLLQAAVLVR--ENKAG--KAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~--~~~~ll~a~l~~~--~~~~~--~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
...+.+.++.|+.+.|..++......+-.. ....++.+.--.. .++|- .+.=.+.+=....|+... . +.-|+
T Consensus 58 I~~AR~Alf~G~~~~Ak~ll~~A~~~l~~a~~D~~~f~ka~~~~p~~~d~wlPVd~e~~l~ed~~~tp~K~~-A-va~AN 135 (209)
T PRK10316 58 VQVARLALFHGDPEKAKELTNQASALLSDDSTDWAKFAKPDKKAPVNGDQYIVINASVGISEDYVATPEKEA-A-IKIAN 135 (209)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccHHHHHhccccCCCCCCceEEeCCeEEecccccCChhHHH-H-HHHHH
Confidence 456889999999999998888655332211 1112222210000 00000 000000000001133222 2 56777
Q ss_pred HHHHcCChHHHHHHHhcccc-------CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 196 VAAAANHPFIAAESLAKIPD-------IQH---MPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~-------~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
-.++.|+...|++.|+-+.. +-+ ...-+ ..+..++..|++.+|-..|.++..
T Consensus 136 ~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V-~~A~~ll~~gkyyeA~~aLk~a~d 197 (209)
T PRK10316 136 EKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAV-ADAQKLLDKGKYYEANLALKGAED 197 (209)
T ss_pred HHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHH-HHHHHHHhCCChhHHHHHHHhhcc
Confidence 88888888888888876631 112 11222 335556677888888888877653
No 436
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=41.17 E-value=71 Score=18.98 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 223 VATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 223 ~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
+..+...+.+.|+.+.|..+|+....
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566677777777777777776553
No 437
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=39.97 E-value=2.5e+02 Score=28.91 Aligned_cols=105 Identities=21% Similarity=0.105 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC--ChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK--DVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
-+.++-|--..++|+|..|..-|..+|+.-... .++.+.. .+.++....
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg-----------~a~~k~~~~~~~di~~va------------------ 227 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKG-----------AALSKPFKASAEDISSVA------------------ 227 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh-----------hhccCCCCCChhhHHHHH------------------
Confidence 445667788889999999999998888753211 1122211 112211110
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEE 173 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~ 173 (467)
..|.-.....||.+++.+-|....-+-+-.+|.+...++-+|.+.-...+|.+|.+
T Consensus 228 --------SfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 228 --------SFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred --------HHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 12344568889999999999988888888999998888888888877888888754
No 438
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.91 E-value=1.9e+02 Score=28.65 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=63.5
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHH
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA 241 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~ 241 (467)
++..|+...|.++-.++ +-|+. ..+ .+....|...++|++=...-. ....|--+.-.+..+...|+..+|..
T Consensus 187 li~~~~~k~A~kl~k~F--kv~dk-rfw-~lki~aLa~~~~w~eL~~fa~----skKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEF--KVPDK-RFW-WLKIKALAENKDWDELEKFAK----SKKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHCCCHHHHHHHHHHc--CCcHH-HHH-HHHHHHHHhcCCHHHHHHHHh----CCCCCCChHHHHHHHHHCCCHHHHHH
Confidence 45677777777775554 22443 333 677888899999987544322 12244334456677778899998888
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHH
Q 012265 242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 283 (467)
Q Consensus 242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~ 283 (467)
++.++-. ..-..+|++.|++.+|++.
T Consensus 259 yI~k~~~----------------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 259 YIPKIPD----------------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHhCCh----------------HHHHHHHHHCCCHHHHHHH
Confidence 8876211 1135668899999998764
No 439
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=38.05 E-value=4.6e+02 Score=26.88 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHH-------HHHhcCCh-------hHHHHHHHH----HHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA-------VLVRENKA-------GKAEELLGQ----FAE 180 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~-------l~~~~~~~-------~~A~~~l~~----~l~ 180 (467)
....-.|-+++-.++|+-|...++-+.+.+-.+.. ++..|. .+...+.. ++....++. +..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dka-w~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKA-WKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchh-HHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 34556788899999999999999999887754432 222121 11222211 233334443 222
Q ss_pred ------hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC--CC--C---hhHH-HHHHHHH--HHcCCHHHHHHHHH
Q 012265 181 ------KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI--QH--M---PATV-ATLVALK--ERAGDIDGAAAVLD 244 (467)
Q Consensus 181 ------~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~--~~--~---p~~~-~~l~~ly--~~~g~~~~A~~~l~ 244 (467)
..|....-..+..+.++...|.+.+|...+-++... .. . .+++ ..++..| ...+..-.-..-++
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R 367 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR 367 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH
Confidence 112222223366778888888888877766665432 11 1 1111 1222222 11100000000111
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 245 SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 245 ~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
++. +. +++ .|.-+...|....|..+|..++..+.
T Consensus 368 K~a------------f~-~vL-Ag~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 368 KYA------------FH-MVL-AGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHH------------HH-HHH-HHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 211 11 122 57888999999999999999998763
No 440
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=37.31 E-value=5e+02 Score=27.11 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=71.9
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHH-HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhc
Q 012265 134 MDQARELVAALPDMFPDSVMPLLLQAAV-LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK 212 (467)
Q Consensus 134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l-~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~ 212 (467)
++.|+.+|-++.+.-=-...+++.-|.+ +...|++.-|-++++--+..+|++.... .-.-..++..|+-..|..+|+.
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~-~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYK-EKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHH-HHHHHHHHHhCcHHHHHHHHHH
Confidence 7888888888776432233333444443 4678999999999999999999987654 4555566788999999999997
Q ss_pred ccc-CCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 213 IPD-IQH--MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 213 ~~~-~~~--~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.++ +.. ...++-.+...-..-|+...+..+=+.....
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 653 111 1122323333333445555555544444333
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.21 E-value=2.5e+02 Score=23.49 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=33.7
Q ss_pred hHHHHHHHhcccc--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 203 PFIAAESLAKIPD--IQH-MPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 203 ~~~A~~~L~~~~~--~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
..++..+|.-+.. +.. ...++...+.++...|++++|..+|+.++
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3388888887764 332 45667788999999999999999998764
No 442
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.81 E-value=3.9e+02 Score=31.26 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
..|+.-+..++++-+|..++...+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4566666777888777777776654
No 443
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.21 E-value=60 Score=31.89 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH-HHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ-AAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~-a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
++...+.-....+-+..-..+|.++++.+|.+++.|+.- +.-+...++.+.+..++.+.+..+|+++..
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 343333333344557788888999999999999988763 334567889999999999999999998764
No 444
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.65 E-value=66 Score=25.95 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 219 MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
-|+++..|+.+|...|+.+.|...|+.--..+
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalF 102 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALF 102 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhC
Confidence 68999999999999999999999988644443
No 445
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=35.58 E-value=5.8e+02 Score=27.29 Aligned_cols=117 Identities=22% Similarity=0.159 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC-CC---ChhHHHHHHHHHH
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI-QH---MPATVATLVALKE 231 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-~~---~p~~~~~l~~ly~ 231 (467)
...+..+...+...+++.++++.... |.+ ++.++++++..|....|...+-+-... .. ....-.+++.++.
T Consensus 307 ~r~v~~l~~a~~~~e~i~~~~~ea~~-~~~----yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el~~ 381 (587)
T COG4715 307 DREVPALASAGLQHEAIRLCEREAEG-PGS----YLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAELKE 381 (587)
T ss_pred HHhhhhhccchhhHHHHHHHHHHhcC-ccc----HHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHH
Confidence 34455566778888888888876543 333 367888999999999888887665421 11 2233457888999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHH
Q 012265 232 RAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 283 (467)
Q Consensus 232 ~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~ 283 (467)
..|+.-.|.++-+.+... +|+-..+..+| ++..+...|+.+.+..+
T Consensus 382 ~~g~~~~a~~Laq~~F~r----~p~~~sy~~lw--~~~~~~gi~~~e~~~a~ 427 (587)
T COG4715 382 EEGRLGFAAELAQEAFFR----TPNGRSYLGLW--LAAVYAGIGREEREAAL 427 (587)
T ss_pred hhcchHHHHHHHHHHccC----CCCccchhhHH--HHHHHhhhchHHHHHHH
Confidence 999998888776655431 22223333344 46667777777654433
No 446
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=35.06 E-value=78 Score=23.19 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIK 59 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~ 59 (467)
+...++.|.-.-..|++++|+..|...+.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34457788889999999999999998875
No 447
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.92 E-value=7.4e+02 Score=28.29 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=48.4
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc--------CChHHHHHH--Hhcc---ccC--CC---------
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA--------NHPFIAAES--LAKI---PDI--QH--------- 218 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~--------g~~~~A~~~--L~~~---~~~--~~--------- 218 (467)
+.....+-++.+|+.++..+-.....++..++.+|.+. ++-++|.+. .+++ ++. .+
T Consensus 602 l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~ 681 (877)
T KOG2063|consen 602 LKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERL 681 (877)
T ss_pred hhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhc
Confidence 45566666777777777665543344455555555431 222233333 2222 110 01
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
..+++...+-++.++|+.++|+..+-..+.
T Consensus 682 ~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 682 NGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred cchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 124566677777789999999888776654
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.03 E-value=5.2e+02 Score=26.29 Aligned_cols=53 Identities=17% Similarity=0.009 Sum_probs=32.8
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHHcCChHHHHHHHhcc
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSK------IILLARAQVAAAANHPFIAAESLAKI 213 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~------~~~l~Laql~~~~g~~~~A~~~L~~~ 213 (467)
.+...++|..|..+|.+++...+.... ...++-+..+...-++++|...|++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 456677777777777777766432111 11234455556778888888888853
No 449
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.00 E-value=1.7e+02 Score=32.35 Aligned_cols=171 Identities=19% Similarity=0.117 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCch------HHHHHHHHHH---hcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVM------PLLLQAAVLV---RENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~------~~ll~a~l~~---~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
..|..+-|-..++|+.-+++++.+.. -|+... ..+..|..+. +-|+-++|+..+-.+++........++-
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 34555556667779998888887654 343211 1122222332 4567778888888888765332222212
Q ss_pred HHHHHHH---------HcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH-HHH--HHHhccCCch
Q 012265 192 ARAQVAA---------AANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSA-IKW--WLNAMTEDNK 259 (467)
Q Consensus 192 ~Laql~~---------~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~a-l~~--~~~~~~~~~~ 259 (467)
+-++||. ..+..+.|+.+|+++.++.+....-..++.++...|..=+--..++.. ... .-...+.-..
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~lek 362 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEK 362 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHH
Confidence 2355553 356678899999999887652221123444444444321111111111 000 0000111112
Q ss_pred HHHHHHHHHHHH---HHCCChhHHHHHHHHHHHhcCC
Q 012265 260 LSVIMQEAASFK---LRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 260 ~~~ll~~la~~~---l~~g~~~~A~~~le~ll~~~pd 293 (467)
+...|. +|.++ .-.++|.+|+..-+.+.++.|.
T Consensus 363 lq~YWd-V~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 363 LQEYWD-VATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHHHHh-HHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 222222 34433 2357999999999999998864
No 450
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.75 E-value=5.5e+02 Score=26.43 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=45.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCC----Cch--HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPD----SVM--PLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~----~~~--~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
....|++.+.+++|..++.+.. +|+ +.. ..++.+.+-.-+++|..|.+.+-+++.+.|.+
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4456777888999999888765 443 223 35577777788899999999999999999974
No 451
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=33.74 E-value=46 Score=28.67 Aligned_cols=14 Identities=29% Similarity=0.112 Sum_probs=6.7
Q ss_pred cccccCCCCCCccc
Q 012265 448 QNVAQSSKGSSKSS 461 (467)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (467)
......+.++++++
T Consensus 133 ~~~a~~t~~~~~~~ 146 (147)
T PF06112_consen 133 GAGAGDTAPSSKKK 146 (147)
T ss_pred CCcccccCCCccCC
Confidence 33444555555433
No 452
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=33.53 E-value=5.4e+02 Score=26.36 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHH
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 72 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~ 72 (467)
.-.||..+++.|+++-|..+|+.+.+..-+|..-.++++
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~ 249 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAG 249 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHh
Confidence 355899999999999999999999887666666555543
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=4.4e+02 Score=29.87 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL 62 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p 62 (467)
.-.+|.||-+...|++.+|++.|..+|-.-|
T Consensus 992 ~~kl~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 992 NKKLQKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 3468999999999999999999999986644
No 454
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=33.22 E-value=2e+02 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
+.+++.+|...|.+++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55689999999999999999999887
No 455
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=32.69 E-value=89 Score=32.97 Aligned_cols=22 Identities=9% Similarity=-0.237 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 012265 223 VATLVALKERAGDIDGAAAVLD 244 (467)
Q Consensus 223 ~~~l~~ly~~~g~~~~A~~~l~ 244 (467)
+..|+..+.+.+++.+|+....
T Consensus 448 h~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHH
Confidence 3344444444444444444443
No 456
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.17 E-value=1.2e+03 Score=29.84 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-c-c--CCch--
Q 012265 186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA-M-T--EDNK-- 259 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~-~-~--~~~~-- 259 (467)
...+++.+|++....|+++-|-..+-.+.+.+ .|.++...+.++-++|+...|+.+|++.++..... . + +.+.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 33466999999999999999999998888766 67888888999999999999999999998654221 0 0 0011
Q ss_pred ----HHHHHHHHHHHHHHCCChh--HHHHHHHHHHHhcC
Q 012265 260 ----LSVIMQEAASFKLRHGREE--DASHLFEELVKTHG 292 (467)
Q Consensus 260 ----~~~ll~~la~~~l~~g~~~--~A~~~le~ll~~~p 292 (467)
....+...+.+.-..|+.+ +-...|.++.+..|
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1112222344455556654 44677788877776
No 457
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.16 E-value=84 Score=19.63 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHHhcCCHHHHHHHH
Q 012265 276 REEDASHLFEELVKTHGSIEALVGLV 301 (467)
Q Consensus 276 ~~~~A~~~le~ll~~~pd~~ala~Lv 301 (467)
.++.|..+|++.+..+|+...++.++
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 46789999999999999877766553
No 458
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=32.06 E-value=6.3e+02 Score=26.97 Aligned_cols=78 Identities=28% Similarity=0.256 Sum_probs=52.9
Q ss_pred HHHHHhccccCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 138 RELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFA-EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 138 ~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l-~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
...+.++-...++... ..++-+.+++++|+...|..++.++- ...|..-....++.|+|.+.+.++..|...|.....
T Consensus 48 ~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~ 127 (604)
T COG3107 48 QFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLP 127 (604)
T ss_pred HHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcch
Confidence 3344444444444333 34455567789999999998888876 444443333447789999999999999999988764
No 459
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.43 E-value=92 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.135 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
+.-.++.|.-+-..|++++|+..|...+..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888899999999999999998864
No 460
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.21 E-value=2.9e+02 Score=27.64 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 219 MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
...+|..++.|+...|.++.++.+|++|+..
T Consensus 139 ~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 139 LAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 3456778888888888888888888888753
No 461
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.86 E-value=8.3e+02 Score=27.33 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=88.0
Q ss_pred HHHHcCCHHHHHHHHHhccccCCCCchHHH--HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChH
Q 012265 127 LLLHANKMDQARELVAALPDMFPDSVMPLL--LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPF 204 (467)
Q Consensus 127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~l--l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~ 204 (467)
-++.-+++++|....+.....-|....-.+ ....=|+-.|+|++|-..+..++.. +...+ ..-+..+...++..
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eW-e~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEW-ELWVFKFAELDQLT 440 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHH-HHHHHHhccccccc
Confidence 445667789998888876554443222111 1112236789999998888777643 22222 33444555555544
Q ss_pred HHHHHHhccccCCCChhHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------------ccCCchHHHHHHHHHH
Q 012265 205 IAAESLAKIPDIQHMPATV-ATLVALKERAGDIDGAAAVLDSAIKWWLNA--------------MTEDNKLSVIMQEAAS 269 (467)
Q Consensus 205 ~A~~~L~~~~~~~~~p~~~-~~l~~ly~~~g~~~~A~~~l~~al~~~~~~--------------~~~~~~~~~ll~~la~ 269 (467)
.-...+=.-.. .-.|.++ ..|+..+. .+. .-|.+.+..|+.. ...+.....+...++.
T Consensus 441 ~Ia~~lPt~~~-rL~p~vYemvLve~L~--~~~----~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 441 DIAPYLPTGPP-RLKPLVYEMVLVEFLA--SDV----KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred hhhccCCCCCc-ccCchHHHHHHHHHHH--HHH----HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 42222111110 1133332 12222221 111 2233333333220 0011122234555789
Q ss_pred HHHHCCChhHHHHHHHHHHHhc-CC-------HHHHHHHHHHhccCChhHHHHH
Q 012265 270 FKLRHGREEDASHLFEELVKTH-GS-------IEALVGLVTTSAHVDVDKAESY 315 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~~-pd-------~~ala~Lv~a~~~~d~~kA~~l 315 (467)
+|+..++|+.|..+|-++.... =+ .+.....+.-...+|.++|..+
T Consensus 514 LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~l 567 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDL 567 (846)
T ss_pred HHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHH
Confidence 9999999999999987765432 01 1223333444455666666554
No 462
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=29.81 E-value=1.3e+02 Score=25.16 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=27.2
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHH
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGSIEALVG 299 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~ 299 (467)
+|..++..|++++|+..|-.++...|.+..+.+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 688899999999999999999999988654443
No 463
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=29.75 E-value=1e+02 Score=26.52 Aligned_cols=44 Identities=27% Similarity=0.168 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhc
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE 165 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~ 165 (467)
+..+.-.+..|++.-|.++++.++..+|++..+..+++..+.+.
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999988888766544
No 464
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=29.47 E-value=1e+02 Score=23.47 Aligned_cols=29 Identities=24% Similarity=0.153 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
.-.++.|.-.-..|++++|+..|.+.+..
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44678899999999999999999988764
No 465
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.87 E-value=94 Score=22.45 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
++|.-+-|...|++++|.+.+..+...
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 567778899999999999999888753
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.69 E-value=3.5e+02 Score=22.59 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265 238 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 238 ~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll 288 (467)
.+..+|.-+... ..+ ..+..++..-|.++...|++++|.++|+..+
T Consensus 81 ~~~~if~~l~~~---~IG--~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSK---GIG--TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHH---TTS--TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc---Ccc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 777777766542 222 3445567777999999999999999998764
No 467
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.47 E-value=4.5e+02 Score=26.73 Aligned_cols=57 Identities=14% Similarity=-0.027 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-------HHHHHHHHHHhcCChhHHHHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVM-------PLLLQAAVLVRENKAGKAEELLGQ 177 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-------~~ll~a~l~~~~~~~~~A~~~l~~ 177 (467)
....+..++..++|..|...|+.+....+.... ..+..+..+...-++++|.+.|+.
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345667788899999999999999877542211 234555566788999999999985
No 468
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.39 E-value=2e+02 Score=32.13 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
..++.+.+-++-|+.+-+. ...+...+..+++..|..+...|++++|...|-+.+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-------~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-------QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3445555566655554432 22234567788888999999999999999988776643
No 469
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.10 E-value=6.2e+02 Score=25.34 Aligned_cols=153 Identities=17% Similarity=0.111 Sum_probs=88.2
Q ss_pred HhcCChhHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc----CCC-Ch----hHHHHHHH
Q 012265 163 VRENKAGKAEELLGQFAEK-----LPDKSKIILLARAQVAAAANHPFIAAESLAKIPD----IQH-MP----ATVATLVA 228 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~-----~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~----~~~-~p----~~~~~l~~ 228 (467)
-+.++.++|++.++++.+. .|+-...+....+.+++..|+..++...+..+-+ ... .+ .++..-..
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq 165 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ 165 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence 4556889999999988764 3544445556778899999999999988887643 111 22 22333345
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhccCC---chHHHHHHHHHHHHHHCCC----hh--HHHHHHHHHHHhcCCHHHHHH
Q 012265 229 LKERAGDIDGAAAVLDSAIKWWLNAMTED---NKLSVIMQEAASFKLRHGR----EE--DASHLFEELVKTHGSIEALVG 299 (467)
Q Consensus 229 ly~~~g~~~~A~~~l~~al~~~~~~~~~~---~~~~~ll~~la~~~l~~g~----~~--~A~~~le~ll~~~pd~~ala~ 299 (467)
+|...|++.. +|..++.+..-..-++ .........++.. .-.|+ +- -|.-+|+.+.. .+.+-+..
T Consensus 166 Yyk~~~d~a~---yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~a-ALLGe~iyNfGELL~HPilesL~g--T~~eWL~d 239 (380)
T KOG2908|consen 166 YYKKIGDFAS---YYRHALLYLGCSDIDDLSESEKQDLAFDLSLA-ALLGENIYNFGELLAHPILESLKG--TNREWLKD 239 (380)
T ss_pred HHHHHHhHHH---HHHHHHHHhccccccccCHHHHHHHHHHHHHH-HHhccccccHHHHHhhHHHHHhcC--CcHHHHHH
Confidence 6666677664 4555554431110000 1100111112211 12232 22 25556666653 45677888
Q ss_pred HHHHhccCChhHHHHHHhcCCC
Q 012265 300 LVTTSAHVDVDKAESYEKRLKP 321 (467)
Q Consensus 300 Lv~a~~~~d~~kA~~l~~~L~~ 321 (467)
++.|+...|..+-+++....-.
T Consensus 240 ll~Afn~Gdl~~f~~l~~~~~~ 261 (380)
T KOG2908|consen 240 LLIAFNSGDLKRFESLKGVWGK 261 (380)
T ss_pred HHHHhccCCHHHHHHHHHHhcc
Confidence 9999999998888777665433
No 470
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=28.08 E-value=2.1e+02 Score=27.04 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHH
Q 012265 171 AEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKER 232 (467)
Q Consensus 171 A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~ 232 (467)
|+..|..++...|++... +..||-|+..+|+.-+|+-.|-+.+-.. +.+.....|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p-~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP-YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH-HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc-ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567888888888888654 5788888888888888888887776443 356666667777666
No 471
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.90 E-value=3.9e+02 Score=30.32 Aligned_cols=127 Identities=18% Similarity=0.150 Sum_probs=65.6
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
+..|+.+.|++...++ ++... ...|++..+.+|+-+-|.-+|++.-. +..|..||.-.|+.++-.++
T Consensus 654 Le~gnle~ale~akkl-----dd~d~-w~rLge~Al~qgn~~IaEm~yQ~~kn-------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-----DDKDV-WERLGEEALRQGNHQIAEMCYQRTKN-------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred hhcCCHHHHHHHHHhc-----CcHHH-HHHHHHHHHHhcchHHHHHHHHHhhh-------hhheeEEEEEeCCHHHHHHH
Confidence 4566676666554432 33333 36777777777777777777776542 22445566666777665555
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHhcCC
Q 012265 243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRLK 320 (467)
Q Consensus 243 l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l~~~L~ 320 (467)
...|-.. + + ....+. . -+-+|+.++=..+++..=.. .++.+ .+.++...+.|+++...+.
T Consensus 721 ~~iae~r------~-D-~~~~~q--n--alYl~dv~ervkIl~n~g~~-----~layl-ta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 721 MKIAEIR------N-D-ATGQFQ--N--ALYLGDVKERVKILENGGQL-----PLAYL-TAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHhh------h-h-hHHHHH--H--HHHhccHHHHHHHHHhcCcc-----cHHHH-HHhhcCcHHHHHHHHHhhc
Confidence 4443221 0 0 000111 1 12345666555555432211 13333 3445666677777766543
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=5.9e+02 Score=24.97 Aligned_cols=168 Identities=15% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc------cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH--h---CCCcHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPD------MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE--K---LPDKSK 187 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~------~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~--~---~P~~~~ 187 (467)
.+..-+.-+++..|+|..|...+..++. .-|.-...+++...+|..-.+..++..-|..+-. . .|....
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlq 205 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQ 205 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence 3445567788999999999988886652 2345566778888888777777766555443211 1 232211
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHhccccC----CCC-hhHHHHHHHHH--HHcCCHHHHHHHHHH--HHHHHHHhccCC
Q 012265 188 -IILLARAQVAAAANHPFIAAESLAKIPDI----QHM-PATVATLVALK--ERAGDIDGAAAVLDS--AIKWWLNAMTED 257 (467)
Q Consensus 188 -~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~~-p~~~~~l~~ly--~~~g~~~~A~~~l~~--al~~~~~~~~~~ 257 (467)
.+-+.-|-+++...+|.-|...|-.+++- .-+ .+.+.....++ ...++.++...+++. .+.+|..
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~----- 280 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDD----- 280 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhh-----
Confidence 12233344556667888888877666541 111 12222222222 235777777777753 4444432
Q ss_pred chHHHHHHHHHHHHHH--CCChhHHHHHHHHHHHhcC
Q 012265 258 NKLSVIMQEAASFKLR--HGREEDASHLFEELVKTHG 292 (467)
Q Consensus 258 ~~~~~ll~~la~~~l~--~g~~~~A~~~le~ll~~~p 292 (467)
.. ..+++.++..+-. ..++..|+..|+.-+..++
T Consensus 281 r~-I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 281 RM-IRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred hh-HHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 12 2345555655522 3466677777766665443
No 473
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.76 E-value=5.4e+02 Score=24.52 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=38.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChh-HHHHH
Q 012265 159 AAVLVRENKAGKAEELLGQFAEKLP-----------DKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPA-TVATL 226 (467)
Q Consensus 159 a~l~~~~~~~~~A~~~l~~~l~~~P-----------~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~-~~~~l 226 (467)
|-+...+|+.-+|+..|+..+.-+. +.+...+..-.--++..+++++|++.|..+.++.++|. ++.++
T Consensus 199 aiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~ 278 (333)
T KOG0991|consen 199 AIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTL 278 (333)
T ss_pred HhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3344567777777777776554321 00001112222234456777788877777777776553 44444
Q ss_pred HHHH
Q 012265 227 VALK 230 (467)
Q Consensus 227 ~~ly 230 (467)
+.+.
T Consensus 279 FRv~ 282 (333)
T KOG0991|consen 279 FRVV 282 (333)
T ss_pred HHHH
Confidence 4444
No 474
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=27.49 E-value=2.4e+02 Score=29.95 Aligned_cols=93 Identities=12% Similarity=-0.115 Sum_probs=53.6
Q ss_pred HHHHHHHhccccCCC-ChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265 204 FIAAESLAKIPDIQH-MPATVATLVALKERAG---DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279 (467)
Q Consensus 204 ~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g---~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~ 279 (467)
..|+..|.+.+..-+ ...++...+.++++.+ +.-.|+.-...|+.. ++.....++.++.++...+++.+
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-------n~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-------NPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC-------ChHHHHHHHHHHHHHHHHhhHHH
Confidence 345555555443211 2233445566666543 222333222233321 34445567779999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 012265 280 ASHLFEELVKTHGSIEALVGLVTT 303 (467)
Q Consensus 280 A~~~le~ll~~~pd~~ala~Lv~a 303 (467)
|+.....+...+|...+....|.+
T Consensus 464 al~~~~alq~~~Ptd~a~~~~v~~ 487 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDVARQNFVLC 487 (758)
T ss_pred hhhhHHHHhhcCchhhhhhhhhhc
Confidence 999988888777855455555544
No 475
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=27.40 E-value=1.6e+02 Score=24.61 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHH
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 71 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va 71 (467)
.-.+|+|..+..+|++++|...|-+++...|.-..++-+.
T Consensus 64 l~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 64 LQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4568999999999999999999999998877544444443
No 476
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=26.94 E-value=2.1e+02 Score=28.52 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHcCChHHHHHHHh
Q 012265 134 MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLARAQVAAAANHPFIAAESLA 211 (467)
Q Consensus 134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~Laql~~~~g~~~~A~~~L~ 211 (467)
+..-..+|+.+....|.-+ +.+..|-.+.+.--...++.+++.+.+. |.-. ...+-..+.++.+.|+.++|...|+
T Consensus 312 W~~I~aLYdaL~~~apSPv-V~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 312 WPAIDALYDALEQAAPSPV-VTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred hHHHHHHHHHHHHhCCCCe-EeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 6666677777776666533 3344444444444556677777766554 2211 1233567889999999999999999
Q ss_pred ccccCCCChh
Q 012265 212 KIPDIQHMPA 221 (467)
Q Consensus 212 ~~~~~~~~p~ 221 (467)
+++.+..++.
T Consensus 390 rAi~La~~~a 399 (415)
T COG4941 390 RAIALARNAA 399 (415)
T ss_pred HHHHhcCChH
Confidence 9998766553
No 477
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.74 E-value=6.7e+02 Score=25.22 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=22.2
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
.+.|+...|++-++...|.+.+-..||
T Consensus 219 ~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 219 SGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred HHHhcccCccHhHHHHHHHHHhccCch
Confidence 366677788999999999999888777
No 478
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=1.1e+03 Score=27.78 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC-------------------------ch--H-HHHHH-HHHHhcC
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDS-------------------------VM--P-LLLQA-AVLVREN 166 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~-------------------------~~--~-~ll~a-~l~~~~~ 166 (467)
+..+..+..+..|+..|..-+|..+|.++..-+... .. . +++.+ .++..-+
T Consensus 918 lk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHN 997 (1480)
T ss_pred hHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 344566777888899999999998888655322111 01 1 22222 3445566
Q ss_pred ChhHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHH------
Q 012265 167 KAGKAEELLGQFAEKLPDKSK---IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDID------ 237 (467)
Q Consensus 167 ~~~~A~~~l~~~l~~~P~~~~---~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~------ 237 (467)
-.+.++++--.+++.-|++-. .++..+..-++..|.+.+|...+-+..+......-+..++.++.+-|..+
T Consensus 998 ~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred cHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCC
Confidence 777777777777877655422 22344555667889999998888776653323333445555666655543
Q ss_pred ------HHHH-HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHH-HHHHHHHHHhcC
Q 012265 238 ------GAAA-VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA-SHLFEELVKTHG 292 (467)
Q Consensus 238 ------~A~~-~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A-~~~le~ll~~~p 292 (467)
+... +++.+.. ..+-.-+++-.+ +-.|+...+++.+| -.+|+.+.....
T Consensus 1078 figl~~eve~~l~esaaR---s~~~mk~nyYel---LYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAAR---SSPSMKKNYYEL---LYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred ccchHHHHHHHHHHHHhh---cCccccccHHHH---HHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 3333 2222211 111111333333 34567888888765 568888887763
No 479
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=26.05 E-value=11 Score=32.03 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=36.8
Q ss_pred HHHHHHcCChHHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLD 244 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~ 244 (467)
.+.+...+.+...+..|+.+.... .++.+...++.+|.+.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 345556777888878888777432 367888899999999988787777666
No 480
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=2.1e+02 Score=31.56 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=63.3
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
-++..|+..+|+++-.++ +-|+.- .+ .+....+...+++++=.+.-.+ ...|--+.-.+.....+|+.++|.
T Consensus 693 ~li~~g~~k~a~ql~~~F--kipdKr-~~-wLk~~aLa~~~kweeLekfAks----kksPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDF--KIPDKR-LW-WLKLTALADIKKWEELEKFAKS----KKSPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHccchHHHHHHHHhc--CCcchh-hH-HHHHHHHHhhhhHHHHHHHHhc----cCCCCCchhHHHHHHhcccHHHHh
Confidence 346678888888776654 234442 23 3445667778888874333222 223433334567788999999998
Q ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHH
Q 012265 241 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHL 283 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~ 283 (467)
.++.+.-. +.+.+..|++.|++.+|+++
T Consensus 765 KYiprv~~---------------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 765 KYIPRVGG---------------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhhccCC---------------hHHHHHHHHHhccHHHHHHH
Confidence 88776421 11357778999999998864
No 481
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=7.6e+02 Score=25.60 Aligned_cols=175 Identities=18% Similarity=0.022 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccc--cCCCCchH----HHHHHHHHHhcCChhHHHHHHHHHHHhC-------
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPD--MFPDSVMP----LLLQAAVLVRENKAGKAEELLGQFAEKL------- 182 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~--~~P~~~~~----~ll~a~l~~~~~~~~~A~~~l~~~l~~~------- 182 (467)
|.....+..+.++...+++.+|..+++.+.- ..|.+... .+..+.++.+.+..-.+.-++-.++...
T Consensus 271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldy 350 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDY 350 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccch
Confidence 4445566788899999999999999987652 23444332 2233333333444444444443333321
Q ss_pred CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC---------CCChhH-H--HHH-HHHHHHcCCHHHHHHHHHHHHHH
Q 012265 183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---------QHMPAT-V--ATL-VALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---------~~~p~~-~--~~l-~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
+.... -+.+|...+..|..+.|...|..++.. +....+ . .++ ...-....+.+.+...++.|-..
T Consensus 351 l~a~~--~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~ 428 (482)
T KOG4322|consen 351 LEANE--NLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSI 428 (482)
T ss_pred hhhhc--hHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHH
Confidence 22211 267788888899999999999988631 000000 0 001 11122455678888888888877
Q ss_pred HHHhccCCchHHHHHHHHHHHHHHCCChh---HHHHHHHHHHHhcCC
Q 012265 250 WLNAMTEDNKLSVIMQEAASFKLRHGREE---DASHLFEELVKTHGS 293 (467)
Q Consensus 250 ~~~~~~~~~~~~~ll~~la~~~l~~g~~~---~A~~~le~ll~~~pd 293 (467)
|.... ......++..-.+..|...||.+ ++.-+|++.....|.
T Consensus 429 f~kL~-~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~ 474 (482)
T KOG4322|consen 429 FYKLG-CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL 474 (482)
T ss_pred HHHcc-chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC
Confidence 75532 11122223333577777888775 577788887765543
No 482
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=24.40 E-value=5.9e+02 Score=26.38 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccccCCCCc----hHHHHHHHHHHhcCChhHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265 134 MDQARELVAALPDMFPDSV----MPLLLQAAVLVRENKAGKAEELLGQFA--EKLPDKSKIILLARAQVAAAANHPFIAA 207 (467)
Q Consensus 134 ~~~A~~~~~~l~~~~P~~~----~~~ll~a~l~~~~~~~~~A~~~l~~~l--~~~P~~~~~~~l~Laql~~~~g~~~~A~ 207 (467)
.|.+...+-++... |... .........++..|..++|+.+|..=+ -.+|++..+ ..|-..++..|+|..|+
T Consensus 82 ~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~--n~Lmd~fl~~~~~~~A~ 158 (429)
T PF10037_consen 82 LDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF--NLLMDHFLKKGNYKSAA 158 (429)
T ss_pred HHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH--HHHHHHHhhcccHHHHH
Confidence 45566666655432 2211 111234455677888888888887533 346777543 45667778888888888
Q ss_pred HHHhccc
Q 012265 208 ESLAKIP 214 (467)
Q Consensus 208 ~~L~~~~ 214 (467)
.+...+.
T Consensus 159 ~V~~~~~ 165 (429)
T PF10037_consen 159 KVATEMM 165 (429)
T ss_pred HHHHHHH
Confidence 8887765
No 483
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.37 E-value=7.9e+02 Score=28.35 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=59.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC---ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCC
Q 012265 159 AAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN---HPFIAAESLAKIPDIQHMPATVATLVALKERAGD 235 (467)
Q Consensus 159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g---~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~ 235 (467)
...+++.|+++.|+++-+++..- -.|++++-... +.+.+...|... ...+...+...+.+.|+
T Consensus 779 lq~L~~vg~~e~Ai~iAEKY~Df---------qsLV~lcdqld~kdrLq~y~~~~~e~-----~~eFs~~lf~y~ve~~k 844 (1128)
T KOG4121|consen 779 LQVLCKVGQYEQAIQIAEKYKDF---------QSLVQLCDQLDQKDRLQDYETFFNEY-----PKEFSFFLFEYLVEHGK 844 (1128)
T ss_pred HHHHHhcchHHHHHHHHHHhhhH---------HHHHHHHHhhCchhHHHHHHHHHHhh-----hHHHHHHHHHHHHhhch
Confidence 34567788888888877776532 23344443332 333444443332 22445566777778877
Q ss_pred HHHHHHHHH----HHHHHHHHhccCCchHHHHHHHHHHHH-HHCCChhHHHHHHHHHHH
Q 012265 236 IDGAAAVLD----SAIKWWLNAMTEDNKLSVIMQEAASFK-LRHGREEDASHLFEELVK 289 (467)
Q Consensus 236 ~~~A~~~l~----~al~~~~~~~~~~~~~~~ll~~la~~~-l~~g~~~~A~~~le~ll~ 289 (467)
+.+-+.-+. ..+++++.+ + +..+++++ ...|+|+.|...+-.+-.
T Consensus 845 ~~eLl~~f~~~~s~L~qFf~~~--d-------~~~lsWi~ei~nGdy~rAs~~L~~la~ 894 (1128)
T KOG4121|consen 845 LGELLFRFPQQHSVLIQFFQER--D-------YGHLSWIQEILNGDYERASNTLLNLAV 894 (1128)
T ss_pred HHHHHhcchhhHHHHHHHHhhc--c-------ccccHHHHHHhcCcHHHHHHHHHHhcc
Confidence 765554332 123343221 1 11234444 568999999887766554
No 484
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=3.5e+02 Score=23.21 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=35.4
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHH
Q 012265 22 AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 71 (467)
Q Consensus 22 ~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va 71 (467)
+++++|.=+ --.+|+|.-|..+|+++++...+-+++..-+.-..++-|.
T Consensus 73 d~~~~E~~F-mqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 73 DAEEVEKFF-MQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred CHHHHHHHH-HHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 445555433 4468999999999999999999888888776544444443
No 485
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=6.8e+02 Score=24.24 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=79.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHH-
Q 012265 160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDID- 237 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~- 237 (467)
+++.+..+...|+++...++..+|.+-..+++...-+-.-..+..+-+..|..+++..+ +-.++...-.+....|+..
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 35567778889999999999999998766655443333344567777888888876443 5567666666666777666
Q ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 238 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 238 ~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.-+.....++.-. ..++ -+|..--.+...-++++.-+.+-.++++.+
T Consensus 131 rELef~~~~l~~D------aKNY-HaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 131 RELEFTKLMLDDD------AKNY-HAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred chHHHHHHHHhcc------ccch-hhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4455555555421 1111 123323445555667887788888888766
No 486
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.42 E-value=4.2e+02 Score=21.80 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
+.--.+++.-.....++|..+.+.+....-....+.++....+...|+|++| ++...-...|+-.. + +.| .-.+
T Consensus 8 lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p-~-~AL--~a~k 81 (116)
T PF09477_consen 8 LLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEP-W-AAL--CAWK 81 (116)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHH-H-HHH--HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHH-H-HHH--HHHh
Confidence 3333444444445588998888877654443444677888889999999999 44444444565433 2 333 4457
Q ss_pred cCChHHHHHHHhccc
Q 012265 200 ANHPFIAAESLAKIP 214 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~ 214 (467)
.|--+++...|.++.
T Consensus 82 lGL~~~~e~~l~rla 96 (116)
T PF09477_consen 82 LGLASALESRLTRLA 96 (116)
T ss_dssp CT-HHHHHHHHHHHC
T ss_pred hccHHHHHHHHHHHH
Confidence 888888888888764
No 487
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=23.38 E-value=5e+02 Score=32.15 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012265 49 EAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLL 128 (467)
Q Consensus 49 eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~ 128 (467)
=|...|.+ +.+|.|.+++++|.+-.- +.-.+-++.+--+. ..+..-+...++...|..+.+-.|.++
T Consensus 1219 lAK~af~k--n~dP~DaALfYLALkKk~-------Vl~gLfr~~~~hed----~kmv~FfsnnF~eerWrkAAlKNAFvL 1285 (2439)
T KOG1064|consen 1219 LAKAAFQK--KRDPLDAALFYLALKKKQ-------VLWGLFRLAKDHED----TKMVVFFSNNFTEERWRKAALKNAFVL 1285 (2439)
T ss_pred HHHHHHHh--cCChhhhhHHHHHHHHHH-------HHHHHHHHhhcccc----chHHHHhhccccHHHHHHHHHhhHHHH
Confidence 35666776 778999998887754321 11111111110000 011112223445556666666666666
Q ss_pred HHcCCHHHHH
Q 012265 129 LHANKMDQAR 138 (467)
Q Consensus 129 l~~~~~~~A~ 138 (467)
|--.+|+.|.
T Consensus 1286 LgKhRfe~Aa 1295 (2439)
T KOG1064|consen 1286 LGKHRFEHAA 1295 (2439)
T ss_pred hhhHHHHHHH
Confidence 6666665553
No 488
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=23.16 E-value=8.6e+02 Score=25.25 Aligned_cols=89 Identities=15% Similarity=0.016 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhC-----------C--CcH----HHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKL-----------P--DKS----KIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~-----------P--~~~----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
+-.|...+++++|..|..-+..+|+.. | ++. ..+.--|+-.|+..++.+-|+..-.+-+-+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 344555567777776665555554422 1 111 12234567788888999988887766654432
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLD 244 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~ 244 (467)
.+.-+..-+.++....++.+|..-+-
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334566666677776655443
No 489
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.13 E-value=1.2e+02 Score=22.99 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
.++.|.-.-..|++++|..+|..++..
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 466777777889999999999998875
No 490
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.95 E-value=7.8e+02 Score=25.59 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHHhc
Q 012265 268 ASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 268 a~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
|-+.+.+|+-++|.+.|+.+....
T Consensus 274 GV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 274 GVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHH
Confidence 777788999999999999988754
No 491
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=1.1e+03 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHH
Q 012265 267 AASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~ 289 (467)
+|-+..-.|. .+|+.+++.+..
T Consensus 613 LGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 613 LGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred HhhhhcCCCc-HHHHHHHhhhhc
Confidence 3444444443 478888888876
No 492
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=22.90 E-value=9.4e+02 Score=25.86 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265 219 MPATVATLVALKER--AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEEL 287 (467)
Q Consensus 219 ~p~~~~~l~~ly~~--~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~l 287 (467)
.|-.+..|+.|-.- ...-..++.+|.+|+..-+..-.+..-+. +.-+|.++.+++++.+|+...-++
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYP--Yty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYP--YTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHH--HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcccc--ceehhhHHHHHHHHHHHHHHHHHH
Confidence 56666666666543 33456778888888865443332223333 333688899999999998655444
No 493
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=22.78 E-value=3.1e+02 Score=23.32 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=22.8
Q ss_pred HHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265 271 KLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS 304 (467)
Q Consensus 271 ~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~ 304 (467)
++..-+.+.|..+|+++++.+|+ ..+...++-+.
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 44555778999999999999998 34445555443
No 494
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.64 E-value=1.6e+02 Score=21.26 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
..+.-|.+.|++++|.+++.......
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34566677888888888887766543
No 495
>PRK14388 hypothetical protein; Provisional
Probab=22.18 E-value=65 Score=24.92 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCcc
Q 012265 374 PKGFDPANPGPPPDPERWLPKR 395 (467)
Q Consensus 374 pk~~dp~~~~~~pDPERWLP~~ 395 (467)
+.+||| +++.++.|+|+.
T Consensus 62 ~gG~Dp----VP~~~~~~~~~~ 79 (82)
T PRK14388 62 DGGYDT----VPISIKNSKPLN 79 (82)
T ss_pred CCCcCC----CCCcccCCCCcc
Confidence 568999 567888899985
No 496
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.14 E-value=1.7e+02 Score=22.25 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=11.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHH
Q 012265 230 KERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 230 y~~~g~~~~A~~~l~~al~~~ 250 (467)
+...|++++|+.+|.+++.+|
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 334555555555555555444
No 497
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.00 E-value=5.7e+02 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 263 IMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 263 ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
++...+.++...|+.++|..+++++...+|..
T Consensus 146 ~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 146 VYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 35557889999999999999999999999953
No 498
>PF15071 TMEM220: Transmembrane family 220, helix
Probab=21.76 E-value=14 Score=30.10 Aligned_cols=11 Identities=55% Similarity=1.220 Sum_probs=9.6
Q ss_pred CCCCCCCCCcc
Q 012265 385 PPDPERWLPKR 395 (467)
Q Consensus 385 ~pDPERWLP~~ 395 (467)
.||||.|+|.+
T Consensus 12 DPD~~lWv~iY 22 (104)
T PF15071_consen 12 DPDPELWVPIY 22 (104)
T ss_pred CCCHHHHHHHH
Confidence 58999999976
No 499
>TIGR01870 cas_TM1810_Csm2 CRISPR-associated protein, Csm2 family. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.
Probab=21.10 E-value=1.9e+02 Score=23.01 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=32.1
Q ss_pred cchHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhC
Q 012265 2 ILMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLG 45 (467)
Q Consensus 2 ~~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G 45 (467)
.+|+.+..+|..+.. .++-..+++..+|.-+...+||..-+.+
T Consensus 7 Rk~~~~v~~i~~~~~-~~~~~~~~~~~~l~~Lk~klaY~~GR~~ 49 (97)
T TIGR01870 7 RRFYDELRRIEEKIR-RSEQKNEDITAELHMLKPKLAYAVGREG 49 (97)
T ss_pred HHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 467888888887766 2333566788999999999998777664
No 500
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=20.63 E-value=1.8e+02 Score=21.75 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
.-.++.|.-.-..|++++|..+|.+.+..
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33567777788999999999999988753
Done!