Query 012265
Match_columns 467
No_of_seqs 330 out of 1382
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-20 6.4E-25 187.8 29.0 295 4-318 48-364 (388)
2 1w3b_A UDP-N-acetylglucosamine 99.9 3.9E-20 1.3E-24 185.5 30.2 296 4-318 14-330 (388)
3 3hym_B Cell division cycle pro 99.9 1E-19 3.5E-24 176.7 28.2 269 31-319 22-296 (330)
4 2xpi_A Anaphase-promoting comp 99.9 2.6E-19 8.8E-24 189.3 30.7 285 5-318 288-575 (597)
5 3ieg_A DNAJ homolog subfamily 99.9 9.1E-19 3.1E-23 171.6 32.3 295 4-318 18-331 (359)
6 3hym_B Cell division cycle pro 99.9 1.7E-19 5.9E-24 175.1 25.5 267 4-304 37-314 (330)
7 2y4t_A DNAJ homolog subfamily 99.8 8.8E-19 3E-23 178.4 31.3 296 4-319 41-355 (450)
8 4eqf_A PEX5-related protein; a 99.8 4.6E-20 1.6E-24 183.2 20.9 260 32-318 66-352 (365)
9 3ieg_A DNAJ homolog subfamily 99.8 4.2E-18 1.4E-22 166.8 30.4 263 32-318 4-297 (359)
10 2pl2_A Hypothetical conserved 99.8 2.6E-19 8.8E-24 165.9 20.4 198 31-289 5-213 (217)
11 1fch_A Peroxisomal targeting s 99.8 4.7E-19 1.6E-23 175.4 23.5 258 32-317 65-354 (368)
12 3cv0_A Peroxisome targeting si 99.8 1.8E-18 6.3E-23 167.5 24.8 259 32-317 22-310 (327)
13 2y4t_A DNAJ homolog subfamily 99.8 5.7E-18 1.9E-22 172.4 28.3 265 30-318 25-320 (450)
14 2xpi_A Anaphase-promoting comp 99.8 5.3E-18 1.8E-22 179.2 29.0 267 4-305 320-595 (597)
15 3u4t_A TPR repeat-containing p 99.8 1.3E-18 4.5E-23 164.8 19.8 251 33-300 5-261 (272)
16 2pl2_A Hypothetical conserved 99.8 1.8E-18 6.3E-23 160.1 19.5 190 119-317 6-209 (217)
17 2gw1_A Mitochondrial precursor 99.8 2.1E-17 7.2E-22 170.6 28.2 263 4-294 204-482 (514)
18 3fp2_A TPR repeat-containing p 99.8 4.2E-17 1.4E-21 169.6 30.1 262 4-294 217-495 (537)
19 3uq3_A Heat shock protein STI1 99.8 2.9E-17 9.9E-22 153.5 25.9 232 31-291 5-237 (258)
20 2gw1_A Mitochondrial precursor 99.8 1.3E-17 4.6E-22 172.1 24.4 195 115-318 234-440 (514)
21 2h6f_A Protein farnesyltransfe 99.8 3.8E-18 1.3E-22 172.0 18.9 251 26-303 92-362 (382)
22 3cv0_A Peroxisome targeting si 99.8 5.3E-18 1.8E-22 164.3 18.4 274 4-292 36-317 (327)
23 4eqf_A PEX5-related protein; a 99.8 9E-18 3.1E-22 166.6 20.3 267 4-288 80-354 (365)
24 3fp2_A TPR repeat-containing p 99.8 2.6E-17 8.8E-22 171.3 24.4 197 120-318 278-487 (537)
25 1fch_A Peroxisomal targeting s 99.8 2.4E-17 8.2E-22 163.0 22.9 274 4-290 79-359 (368)
26 3vtx_A MAMA; tetratricopeptide 99.8 2.8E-17 9.7E-22 146.9 19.1 170 117-294 4-174 (184)
27 2q7f_A YRRB protein; TPR, prot 99.8 7.8E-17 2.7E-21 149.5 21.0 202 32-294 24-226 (243)
28 3mkr_A Coatomer subunit epsilo 99.7 3.3E-16 1.1E-20 151.9 25.6 264 5-308 15-282 (291)
29 3vtx_A MAMA; tetratricopeptide 99.7 1.6E-16 5.4E-21 142.0 20.3 168 29-250 3-171 (184)
30 2ho1_A Type 4 fimbrial biogene 99.7 2.9E-16 1E-20 146.9 22.9 203 31-294 37-242 (252)
31 2vq2_A PILW, putative fimbrial 99.7 1.7E-15 5.7E-20 138.3 25.0 205 30-294 7-215 (225)
32 3mkr_A Coatomer subunit epsilo 99.7 5.2E-16 1.8E-20 150.5 21.4 244 40-318 8-260 (291)
33 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.7E-15 5.8E-20 143.1 24.2 228 5-294 21-248 (275)
34 4a1s_A PINS, partner of inscut 99.7 4.8E-16 1.6E-20 156.3 21.4 276 29-318 46-368 (411)
35 3sf4_A G-protein-signaling mod 99.7 8.7E-16 3E-20 153.3 21.9 275 30-318 8-332 (406)
36 2ho1_A Type 4 fimbrial biogene 99.7 3.4E-15 1.2E-19 139.6 23.6 198 113-318 32-234 (252)
37 4a1s_A PINS, partner of inscut 99.7 4.8E-16 1.6E-20 156.3 18.5 272 4-293 63-375 (411)
38 3ro2_A PINS homolog, G-protein 99.7 1.9E-15 6.5E-20 145.8 21.3 272 33-318 7-328 (338)
39 2h6f_A Protein farnesyltransfe 99.7 1.6E-15 5.4E-20 152.9 21.0 196 116-319 95-302 (382)
40 4gyw_A UDP-N-acetylglucosamine 99.7 5.9E-16 2E-20 168.0 18.9 170 116-293 7-177 (723)
41 2vq2_A PILW, putative fimbrial 99.7 8.3E-15 2.8E-19 133.7 22.8 193 118-318 8-207 (225)
42 3sf4_A G-protein-signaling mod 99.7 1.9E-15 6.7E-20 150.7 19.1 269 5-291 25-337 (406)
43 3ro2_A PINS homolog, G-protein 99.7 1.6E-15 5.4E-20 146.4 17.5 271 4-292 20-334 (338)
44 2q7f_A YRRB protein; TPR, prot 99.7 2.9E-15 1E-19 138.7 18.4 192 119-318 24-218 (243)
45 4i17_A Hypothetical protein; T 99.7 4.2E-15 1.4E-19 137.5 18.7 168 119-294 8-213 (228)
46 4g1t_A Interferon-induced prot 99.7 7.4E-15 2.5E-19 150.5 22.1 244 30-294 135-405 (472)
47 3qky_A Outer membrane assembly 99.7 7.2E-15 2.5E-19 139.1 20.4 172 119-294 16-228 (261)
48 3uq3_A Heat shock protein STI1 99.7 1.7E-14 5.7E-19 134.6 22.4 192 118-318 5-232 (258)
49 4g1t_A Interferon-induced prot 99.6 4E-14 1.4E-18 145.0 27.1 266 27-317 90-396 (472)
50 3as5_A MAMA; tetratricopeptide 99.6 1.7E-14 5.7E-19 127.2 20.7 167 119-293 9-176 (186)
51 1ouv_A Conserved hypothetical 99.6 4.8E-14 1.7E-18 134.1 25.4 228 31-293 6-254 (273)
52 4gyw_A UDP-N-acetylglucosamine 99.6 7.9E-15 2.7E-19 159.2 20.2 169 30-252 8-177 (723)
53 3urz_A Uncharacterized protein 99.6 2.6E-15 9E-20 137.8 14.1 170 119-297 5-193 (208)
54 3u4t_A TPR repeat-containing p 99.6 3.8E-14 1.3E-18 133.8 21.1 218 4-250 18-251 (272)
55 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.6E-14 8.9E-19 132.6 19.6 171 119-293 5-216 (225)
56 4abn_A Tetratricopeptide repea 99.6 6.5E-15 2.2E-19 152.7 16.8 216 44-287 81-318 (474)
57 2ond_A Cleavage stimulation fa 99.6 1.6E-13 5.5E-18 133.5 24.9 227 48-293 33-273 (308)
58 4abn_A Tetratricopeptide repea 99.6 8.5E-15 2.9E-19 151.8 16.5 182 117-304 101-302 (474)
59 3qky_A Outer membrane assembly 99.6 1.9E-14 6.5E-19 136.2 16.7 198 30-281 14-252 (261)
60 4i17_A Hypothetical protein; T 99.6 1.2E-13 4.2E-18 127.6 20.7 165 32-249 8-209 (228)
61 3nf1_A KLC 1, kinesin light ch 99.6 1.1E-14 3.8E-19 139.7 13.1 247 28-293 24-310 (311)
62 3edt_B KLC 2, kinesin light ch 99.6 5.8E-14 2E-18 132.3 17.5 234 3-290 22-281 (283)
63 3ulq_A Response regulator aspa 99.6 1.7E-13 6E-18 137.0 21.0 236 35-291 107-369 (383)
64 3as5_A MAMA; tetratricopeptide 99.6 2.7E-13 9.3E-18 119.3 19.2 167 31-251 8-175 (186)
65 3ulq_A Response regulator aspa 99.6 7.3E-13 2.5E-17 132.5 24.5 273 32-319 13-332 (383)
66 2pzi_A Probable serine/threoni 99.5 4.7E-14 1.6E-18 152.7 16.6 169 129-306 402-580 (681)
67 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-13 8.1E-18 128.3 19.1 196 114-318 39-240 (275)
68 2pzi_A Probable serine/threoni 99.5 4.2E-13 1.4E-17 145.3 23.0 191 42-253 402-602 (681)
69 3urz_A Uncharacterized protein 99.5 2.3E-13 7.9E-18 124.7 17.2 181 32-250 5-187 (208)
70 2r5s_A Uncharacterized protein 99.5 2.9E-13 1E-17 120.4 16.9 161 33-248 8-172 (176)
71 3qou_A Protein YBBN; thioredox 99.5 3.1E-13 1.1E-17 130.4 18.1 163 32-248 118-283 (287)
72 1qqe_A Vesicular transport pro 99.5 2.3E-13 7.7E-18 131.6 15.4 239 3-293 6-272 (292)
73 2yhc_A BAMD, UPF0169 lipoprote 99.5 8.3E-13 2.8E-17 122.4 18.4 167 32-248 5-212 (225)
74 1hz4_A MALT regulatory protein 99.5 8.3E-12 2.9E-16 123.9 26.4 276 5-292 30-324 (373)
75 4ga2_A E3 SUMO-protein ligase 99.5 5.9E-14 2E-18 122.0 9.3 145 124-276 3-149 (150)
76 2ond_A Cleavage stimulation fa 99.5 2.4E-12 8.1E-17 125.2 21.6 219 6-251 33-272 (308)
77 1hz4_A MALT regulatory protein 99.5 4.9E-12 1.7E-16 125.6 24.3 274 31-317 14-317 (373)
78 1ouv_A Conserved hypothetical 99.5 8.1E-12 2.8E-16 118.5 24.4 221 61-318 2-247 (273)
79 4ga2_A E3 SUMO-protein ligase 99.5 6.5E-14 2.2E-18 121.7 8.9 116 119-235 32-149 (150)
80 3qou_A Protein YBBN; thioredox 99.5 3.6E-13 1.2E-17 130.0 15.0 165 119-289 118-283 (287)
81 2r5s_A Uncharacterized protein 99.5 2.2E-13 7.6E-18 121.1 12.1 163 120-289 8-172 (176)
82 3nf1_A KLC 1, kinesin light ch 99.5 8.5E-13 2.9E-17 126.4 16.8 174 116-290 25-224 (311)
83 3q15_A PSP28, response regulat 99.5 1.5E-12 5.2E-17 130.1 18.6 241 33-291 103-366 (378)
84 2xm6_A Protein corresponding t 99.5 8.9E-11 3.1E-15 121.5 32.2 182 120-317 185-391 (490)
85 2xm6_A Protein corresponding t 99.5 8.7E-11 3E-15 121.6 31.9 184 119-318 220-428 (490)
86 2vsy_A XCC0866; transferase, g 99.4 2.1E-12 7.1E-17 136.5 16.9 155 131-293 2-160 (568)
87 3q15_A PSP28, response regulat 99.4 1.6E-10 5.6E-15 115.2 28.9 269 34-318 15-328 (378)
88 2ifu_A Gamma-SNAP; membrane fu 99.4 6.7E-12 2.3E-16 122.1 18.1 187 125-314 43-253 (307)
89 2ooe_A Cleavage stimulation fa 99.4 1.5E-10 5.1E-15 121.1 29.0 193 118-317 272-487 (530)
90 1qqe_A Vesicular transport pro 99.4 4.9E-12 1.7E-16 122.1 15.6 190 125-314 44-258 (292)
91 2ooe_A Cleavage stimulation fa 99.4 2.5E-11 8.4E-16 127.1 20.5 241 48-308 255-513 (530)
92 4gco_A Protein STI-1; structur 99.3 1.1E-11 3.6E-16 104.4 13.1 113 116-229 11-124 (126)
93 3e4b_A ALGK; tetratricopeptide 99.3 7.5E-11 2.6E-15 121.3 21.4 181 120-318 143-347 (452)
94 3edt_B KLC 2, kinesin light ch 99.3 9.6E-12 3.3E-16 117.0 13.5 158 132-290 15-198 (283)
95 3gyz_A Chaperone protein IPGC; 99.3 2.8E-12 9.7E-17 111.7 8.8 110 139-249 23-133 (151)
96 2fo7_A Synthetic consensus TPR 99.3 8.5E-11 2.9E-15 97.1 16.3 131 155-293 4-135 (136)
97 2fo7_A Synthetic consensus TPR 99.3 5E-11 1.7E-15 98.5 14.8 129 120-249 3-132 (136)
98 4gco_A Protein STI-1; structur 99.3 2.1E-11 7.2E-16 102.5 12.0 106 143-249 4-110 (126)
99 2vsy_A XCC0866; transferase, g 99.3 4.4E-11 1.5E-15 126.3 16.7 153 44-216 2-157 (568)
100 2vgx_A Chaperone SYCD; alterna 99.3 2.3E-11 7.9E-16 105.3 12.0 111 139-250 8-119 (148)
101 4f3v_A ESX-1 secretion system 99.3 3E-11 1E-15 115.5 13.5 206 35-249 11-237 (282)
102 3gw4_A Uncharacterized protein 99.3 1.6E-10 5.6E-15 103.6 17.0 161 128-291 2-177 (203)
103 1a17_A Serine/threonine protei 99.3 1.5E-10 5.1E-15 100.2 15.9 133 118-251 13-148 (166)
104 3gyz_A Chaperone protein IPGC; 99.3 6.5E-11 2.2E-15 103.1 13.3 105 116-221 34-138 (151)
105 2xcb_A PCRH, regulatory protei 99.2 6.4E-11 2.2E-15 101.2 12.9 112 139-251 5-117 (142)
106 3u3w_A Transcriptional activat 99.2 5.6E-10 1.9E-14 107.4 20.6 170 121-291 78-267 (293)
107 2qfc_A PLCR protein; TPR, HTH, 99.2 7.7E-10 2.6E-14 106.4 21.2 171 120-291 77-267 (293)
108 3mv2_B Coatomer subunit epsilo 99.2 4.5E-10 1.5E-14 108.6 19.0 187 120-308 102-300 (310)
109 3dra_A Protein farnesyltransfe 99.2 9.4E-10 3.2E-14 106.9 21.2 231 41-293 43-291 (306)
110 4gcn_A Protein STI-1; structur 99.2 2.4E-10 8.3E-15 96.0 14.3 110 191-300 12-122 (127)
111 4f3v_A ESX-1 secretion system 99.2 1E-10 3.4E-15 111.8 12.7 190 81-293 19-240 (282)
112 2qfc_A PLCR protein; TPR, HTH, 99.2 1.9E-09 6.5E-14 103.7 21.8 174 32-252 76-269 (293)
113 2e2e_A Formate-dependent nitri 99.2 1.5E-10 5E-15 102.3 12.2 123 163-293 21-147 (177)
114 3upv_A Heat shock protein STI1 99.2 2E-10 6.9E-15 95.5 12.4 98 119-217 5-102 (126)
115 2vyi_A SGTA protein; chaperone 99.2 3.8E-10 1.3E-14 92.9 14.0 119 117-236 11-130 (131)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.2 7.6E-10 2.6E-14 100.3 17.2 127 119-249 7-150 (213)
117 1p5q_A FKBP52, FK506-binding p 99.2 3.4E-10 1.2E-14 111.7 15.8 133 117-250 146-295 (336)
118 1p5q_A FKBP52, FK506-binding p 99.2 2.6E-11 9E-16 119.7 7.7 151 132-290 127-294 (336)
119 3dra_A Protein farnesyltransfe 99.2 4E-09 1.4E-13 102.5 22.6 225 7-248 34-286 (306)
120 2lni_A Stress-induced-phosphop 99.2 3.3E-10 1.1E-14 94.0 13.0 117 118-235 16-133 (133)
121 2xcb_A PCRH, regulatory protei 99.2 1.8E-10 6.3E-15 98.3 11.6 104 117-221 17-121 (142)
122 2vgx_A Chaperone SYCD; alterna 99.1 2.1E-10 7.1E-15 99.2 11.3 106 116-222 19-125 (148)
123 2e2e_A Formate-dependent nitri 99.1 1.5E-10 5.3E-15 102.2 10.4 120 129-249 21-144 (177)
124 1a17_A Serine/threonine protei 99.1 1.5E-09 5.1E-14 93.8 15.8 131 154-290 15-146 (166)
125 3e4b_A ALGK; tetratricopeptide 99.1 5.4E-09 1.9E-13 107.3 22.4 248 31-316 141-415 (452)
126 2c2l_A CHIP, carboxy terminus 99.1 1.1E-10 3.7E-15 112.2 9.0 98 119-217 5-102 (281)
127 1xi4_A Clathrin heavy chain; a 99.1 1.1E-08 3.7E-13 114.8 25.7 237 37-317 1055-1337(1630)
128 4b4t_Q 26S proteasome regulato 99.1 3E-09 1E-13 107.3 19.7 223 33-291 6-246 (434)
129 1na0_A Designed protein CTPR3; 99.1 1.1E-09 3.7E-14 89.3 13.5 115 119-234 10-125 (125)
130 3upv_A Heat shock protein STI1 99.1 1.6E-09 5.5E-14 89.9 14.7 100 152-252 4-104 (126)
131 2ifu_A Gamma-SNAP; membrane fu 99.1 6.3E-10 2.2E-14 108.0 13.4 172 30-250 35-224 (307)
132 3mv2_B Coatomer subunit epsilo 99.1 1.2E-09 4.1E-14 105.6 15.2 174 137-320 85-280 (310)
133 3sz7_A HSC70 cochaperone (SGT) 99.1 6.6E-10 2.3E-14 97.1 12.3 103 118-221 11-114 (164)
134 1hxi_A PEX5, peroxisome target 99.1 3.3E-10 1.1E-14 94.3 9.8 97 121-218 20-116 (121)
135 4gcn_A Protein STI-1; structur 99.1 4.7E-10 1.6E-14 94.2 10.8 108 118-225 8-121 (127)
136 2xev_A YBGF; tetratricopeptide 99.1 1.5E-09 5E-14 90.1 13.4 97 121-218 5-107 (129)
137 1elw_A TPR1-domain of HOP; HOP 99.1 2E-09 7E-14 86.8 13.5 110 119-229 5-115 (118)
138 3rjv_A Putative SEL1 repeat pr 99.1 4.3E-09 1.5E-13 96.4 17.3 159 119-291 19-198 (212)
139 2vyi_A SGTA protein; chaperone 99.1 1.1E-09 3.8E-14 90.1 11.9 123 148-278 8-131 (131)
140 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.2E-09 4.2E-14 98.9 13.4 136 155-294 9-154 (213)
141 2lni_A Stress-induced-phosphop 99.1 1.3E-09 4.5E-14 90.3 12.3 121 148-276 12-133 (133)
142 2c2l_A CHIP, carboxy terminus 99.1 2.3E-09 7.9E-14 102.8 15.3 168 149-319 1-196 (281)
143 3rjv_A Putative SEL1 repeat pr 99.1 2.4E-09 8.2E-14 98.1 14.6 170 137-318 5-193 (212)
144 3rkv_A Putative peptidylprolyl 99.1 2.6E-09 8.8E-14 93.0 14.0 137 29-200 9-145 (162)
145 2fbn_A 70 kDa peptidylprolyl i 99.0 1.8E-09 6E-14 97.4 13.2 122 118-240 38-176 (198)
146 1b89_A Protein (clathrin heavy 99.0 6.6E-10 2.3E-14 112.2 10.0 243 32-334 33-276 (449)
147 3u3w_A Transcriptional activat 99.0 9.9E-09 3.4E-13 98.6 17.3 159 159-317 82-261 (293)
148 1na0_A Designed protein CTPR3; 99.0 7.8E-09 2.7E-13 84.1 14.3 120 148-275 4-125 (125)
149 3q49_B STIP1 homology and U bo 99.0 2.5E-09 8.5E-14 89.7 11.3 97 119-216 10-106 (137)
150 1elr_A TPR2A-domain of HOP; HO 99.0 1.8E-09 6.1E-14 88.9 10.2 113 119-232 5-124 (131)
151 3sz7_A HSC70 cochaperone (SGT) 99.0 2.6E-09 9E-14 93.2 11.7 102 148-250 7-109 (164)
152 3ro3_A PINS homolog, G-protein 99.0 3.9E-09 1.3E-13 89.9 12.3 133 158-291 15-159 (164)
153 2fbn_A 70 kDa peptidylprolyl i 99.0 4.6E-10 1.6E-14 101.3 6.6 145 130-281 16-176 (198)
154 3dss_A Geranylgeranyl transfer 99.0 5.1E-08 1.8E-12 95.4 21.6 229 42-294 40-308 (331)
155 1elr_A TPR2A-domain of HOP; HO 99.0 8.9E-09 3E-13 84.6 14.0 114 190-303 7-121 (131)
156 1hxi_A PEX5, peroxisome target 99.0 2.2E-09 7.4E-14 89.3 9.7 96 154-250 19-115 (121)
157 3q49_B STIP1 homology and U bo 99.0 8E-09 2.7E-13 86.5 13.3 105 147-252 4-109 (137)
158 3rkv_A Putative peptidylprolyl 99.0 2.2E-09 7.7E-14 93.4 10.0 112 118-230 11-142 (162)
159 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 4.6E-09 1.6E-13 108.0 14.0 124 117-241 267-406 (457)
160 2xev_A YBGF; tetratricopeptide 99.0 1.4E-08 4.7E-13 84.1 14.3 119 33-202 4-125 (129)
161 2dba_A Smooth muscle cell asso 99.0 5.6E-09 1.9E-13 88.3 11.8 111 119-230 29-143 (148)
162 1xi4_A Clathrin heavy chain; a 98.9 1.7E-07 5.9E-12 105.3 26.0 248 30-313 1104-1375(1630)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 7.7E-09 2.6E-13 106.4 14.0 150 26-214 263-413 (457)
164 3gw4_A Uncharacterized protein 98.9 4.2E-08 1.4E-12 87.6 17.0 154 163-317 3-171 (203)
165 3q7a_A Farnesyltransferase alp 98.9 5.1E-08 1.8E-12 95.9 18.7 241 32-291 55-332 (349)
166 2hr2_A Hypothetical protein; a 98.9 3.9E-09 1.3E-13 91.9 9.0 117 29-186 9-136 (159)
167 2hr2_A Hypothetical protein; a 98.9 9.1E-09 3.1E-13 89.5 11.2 103 191-293 15-134 (159)
168 2if4_A ATFKBP42; FKBP-like, al 98.9 2.4E-09 8.1E-14 105.7 8.1 153 28-217 176-329 (338)
169 2kck_A TPR repeat; tetratricop 98.9 8.4E-09 2.9E-13 82.4 9.9 100 148-248 2-105 (112)
170 2dba_A Smooth muscle cell asso 98.9 2.3E-08 7.7E-13 84.4 13.0 103 146-249 22-128 (148)
171 2if4_A ATFKBP42; FKBP-like, al 98.9 3.4E-09 1.1E-13 104.6 8.7 133 117-250 178-329 (338)
172 1elw_A TPR1-domain of HOP; HOP 98.9 2.9E-08 9.9E-13 79.9 12.4 96 153-249 5-101 (118)
173 2kck_A TPR repeat; tetratricop 98.9 8.3E-09 2.8E-13 82.4 9.0 98 120-218 8-108 (112)
174 3ro3_A PINS homolog, G-protein 98.8 1.3E-08 4.5E-13 86.6 10.3 134 117-250 8-159 (164)
175 1wao_1 Serine/threonine protei 98.8 1.3E-09 4.3E-14 112.9 4.1 124 120-244 8-134 (477)
176 1ihg_A Cyclophilin 40; ppiase 98.8 3.3E-08 1.1E-12 98.8 14.2 144 28-209 220-363 (370)
177 1ihg_A Cyclophilin 40; ppiase 98.8 1.3E-08 4.3E-13 101.8 10.8 123 118-241 223-362 (370)
178 3k9i_A BH0479 protein; putativ 98.8 3E-09 1E-13 87.4 5.1 85 131-216 3-90 (117)
179 1wao_1 Serine/threonine protei 98.8 3.5E-09 1.2E-13 109.6 5.3 120 158-285 12-134 (477)
180 4e6h_A MRNA 3'-END-processing 98.8 7.9E-07 2.7E-11 95.5 23.4 256 33-311 302-591 (679)
181 4b4t_Q 26S proteasome regulato 98.7 1.8E-07 6.1E-12 94.1 16.5 170 121-291 7-205 (434)
182 3dss_A Geranylgeranyl transfer 98.7 2.5E-06 8.4E-11 83.5 22.8 227 5-249 29-304 (331)
183 3q7a_A Farnesyltransferase alp 98.7 1.1E-06 3.7E-11 86.5 20.3 168 125-300 60-248 (349)
184 1dce_A Protein (RAB geranylger 98.7 2.9E-07 9.8E-12 97.2 16.0 174 125-306 35-238 (567)
185 3n71_A Histone lysine methyltr 98.7 2E-07 6.8E-12 96.4 14.3 131 161-291 318-465 (490)
186 2l6j_A TPR repeat-containing p 98.7 2.7E-08 9.1E-13 79.8 6.2 95 119-214 5-105 (111)
187 3k9i_A BH0479 protein; putativ 98.6 4.7E-08 1.6E-12 80.2 7.2 86 164-250 2-91 (117)
188 1dce_A Protein (RAB geranylger 98.6 1.6E-06 5.4E-11 91.5 19.9 138 134-279 89-244 (567)
189 2kat_A Uncharacterized protein 98.6 8.2E-08 2.8E-12 78.2 7.8 80 136-216 3-82 (115)
190 4e6h_A MRNA 3'-END-processing 98.6 8.5E-07 2.9E-11 95.2 17.6 193 119-318 344-566 (679)
191 1b89_A Protein (clathrin heavy 98.6 1.5E-07 5E-12 95.1 10.5 239 32-320 62-309 (449)
192 1na3_A Designed protein CTPR2; 98.6 4E-07 1.4E-11 70.0 10.5 83 118-201 9-91 (91)
193 2kat_A Uncharacterized protein 98.5 3.3E-07 1.1E-11 74.5 9.7 83 169-252 2-85 (115)
194 1zu2_A Mitochondrial import re 98.5 1.5E-07 5.1E-12 81.7 6.1 86 132-218 16-122 (158)
195 2l6j_A TPR repeat-containing p 98.4 1.8E-07 6.1E-12 74.9 5.5 91 153-244 5-102 (111)
196 3ma5_A Tetratricopeptide repea 98.4 4.6E-07 1.6E-11 72.1 7.9 69 147-216 2-70 (100)
197 1na3_A Designed protein CTPR2; 98.4 8.5E-07 2.9E-11 68.1 8.9 83 151-234 8-91 (91)
198 1zu2_A Mitochondrial import re 98.4 5.2E-07 1.8E-11 78.3 8.2 101 163-294 13-124 (158)
199 2kc7_A BFR218_protein; tetratr 98.3 1.9E-06 6.5E-11 67.7 8.3 85 122-215 4-89 (99)
200 3n71_A Histone lysine methyltr 98.3 3.8E-06 1.3E-10 86.8 12.2 129 122-250 313-465 (490)
201 3ma5_A Tetratricopeptide repea 98.3 3.7E-06 1.3E-10 66.8 9.1 71 181-252 2-73 (100)
202 4g26_A Pentatricopeptide repea 98.2 6.5E-05 2.2E-09 77.9 20.0 175 120-303 28-219 (501)
203 3ly7_A Transcriptional activat 98.1 0.00014 4.8E-09 71.6 19.0 142 146-296 188-345 (372)
204 1klx_A Cysteine rich protein B 98.1 2.4E-05 8.3E-10 66.1 12.0 111 166-291 9-127 (138)
205 2kc7_A BFR218_protein; tetratr 98.1 6.2E-06 2.1E-10 64.6 6.8 85 156-249 4-90 (99)
206 3bee_A Putative YFRE protein; 98.1 2.2E-05 7.5E-10 61.8 10.0 70 148-218 2-74 (93)
207 2uy1_A Cleavage stimulation fa 98.0 0.0006 2.1E-08 70.4 22.9 199 32-251 214-415 (493)
208 4g26_A Pentatricopeptide repea 98.0 0.0001 3.5E-09 76.4 17.0 152 160-319 34-201 (501)
209 3qww_A SET and MYND domain-con 98.0 1.6E-05 5.6E-10 80.7 10.7 93 199-291 310-412 (433)
210 3qwp_A SET and MYND domain-con 98.0 7.3E-05 2.5E-09 75.9 13.8 97 195-291 295-401 (429)
211 3qwp_A SET and MYND domain-con 97.9 7.8E-05 2.7E-09 75.7 13.3 111 161-271 296-423 (429)
212 1klx_A Cysteine rich protein B 97.9 8.9E-05 3E-09 62.6 11.5 109 133-249 10-126 (138)
213 3qww_A SET and MYND domain-con 97.9 5.9E-05 2E-09 76.6 11.5 93 164-256 310-418 (433)
214 3ly7_A Transcriptional activat 97.8 0.00016 5.4E-09 71.2 11.9 127 122-249 200-339 (372)
215 3bee_A Putative YFRE protein; 97.7 4.5E-05 1.5E-09 60.0 5.7 67 119-185 7-76 (93)
216 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00057 2E-08 54.5 11.9 75 220-294 5-79 (104)
217 3u64_A Protein TP_0956; tetrat 97.7 0.00092 3.2E-08 63.3 14.9 106 143-249 143-269 (301)
218 2uy1_A Cleavage stimulation fa 97.6 0.018 6E-07 59.3 25.5 50 136-186 197-246 (493)
219 3ffl_A Anaphase-promoting comp 97.5 0.00032 1.1E-08 60.5 8.9 112 120-231 22-166 (167)
220 1pc2_A Mitochondria fission pr 97.4 0.00064 2.2E-08 58.2 9.0 83 136-218 16-102 (152)
221 3u64_A Protein TP_0956; tetrat 97.4 0.0002 7E-09 67.8 6.1 106 134-246 179-295 (301)
222 3txn_A 26S proteasome regulato 97.0 0.2 6.7E-06 49.7 23.8 29 32-60 20-48 (394)
223 1pc2_A Mitochondria fission pr 97.0 0.0044 1.5E-07 53.0 9.9 39 118-156 71-109 (152)
224 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0077 2.6E-07 47.7 8.5 69 120-188 7-82 (104)
225 3txn_A 26S proteasome regulato 96.6 0.14 4.8E-06 50.8 19.1 173 119-292 20-212 (394)
226 3kae_A CDC27, possible protein 96.6 0.24 8.3E-06 42.6 17.4 160 125-293 40-240 (242)
227 1nzn_A CGI-135 protein, fissio 96.4 0.0099 3.4E-07 49.0 7.8 69 119-187 36-109 (126)
228 1nzn_A CGI-135 protein, fissio 96.3 0.0098 3.4E-07 49.0 7.4 92 135-226 18-114 (126)
229 3mkq_B Coatomer subunit alpha; 96.0 0.16 5.6E-06 44.3 13.7 128 161-319 14-141 (177)
230 3ffl_A Anaphase-promoting comp 95.8 0.027 9.3E-07 48.5 7.9 94 154-247 22-149 (167)
231 1y8m_A FIS1; mitochondria, unk 95.6 0.054 1.8E-06 45.4 8.8 71 118-188 39-113 (144)
232 3o48_A Mitochondria fission 1 95.5 0.044 1.5E-06 45.3 7.8 70 119-188 41-114 (134)
233 3mkq_A Coatomer beta'-subunit; 95.3 0.5 1.7E-05 50.8 17.8 49 125-178 659-707 (814)
234 1zbp_A Hypothetical protein VP 95.2 0.28 9.5E-06 45.7 12.9 122 161-293 6-132 (273)
235 1zbp_A Hypothetical protein VP 95.1 0.26 8.9E-06 45.9 12.3 118 127-249 6-129 (273)
236 3mkq_A Coatomer beta'-subunit; 94.5 0.25 8.4E-06 53.2 12.7 24 191-214 685-708 (814)
237 4b4t_R RPN7, 26S proteasome re 94.4 0.25 8.5E-06 49.7 11.5 99 191-291 135-238 (429)
238 4b4t_P 26S proteasome regulato 94.4 0.17 5.8E-06 51.2 10.2 101 190-291 140-248 (445)
239 3mkq_B Coatomer subunit alpha; 94.1 0.93 3.2E-05 39.4 12.9 104 124-245 11-114 (177)
240 4h7y_A Dual specificity protei 94.1 0.57 1.9E-05 39.6 10.9 60 227-293 67-126 (161)
241 1y8m_A FIS1; mitochondria, unk 93.9 1 3.4E-05 37.7 12.1 73 151-223 38-114 (144)
242 4gns_B Protein CSD3, chitin bi 93.5 0.17 5.9E-06 54.4 8.6 115 131-246 261-397 (754)
243 3o48_A Mitochondria fission 1 93.4 0.62 2.1E-05 38.4 9.9 71 153-223 41-115 (134)
244 3spa_A Mtrpol, DNA-directed RN 93.4 0.65 2.2E-05 51.4 12.9 57 191-247 131-192 (1134)
245 4gns_B Protein CSD3, chitin bi 93.0 1.1 3.8E-05 48.1 14.0 59 155-214 340-398 (754)
246 3lpz_A GET4 (YOR164C homolog); 93.0 3.1 0.0001 40.0 15.6 110 160-284 43-159 (336)
247 4h7y_A Dual specificity protei 92.9 1.6 5.5E-05 36.9 11.7 60 161-221 69-128 (161)
248 4b4t_P 26S proteasome regulato 92.8 3.3 0.00011 41.6 16.6 153 155-308 140-307 (445)
249 4fhn_B Nucleoporin NUP120; pro 92.6 3.2 0.00011 47.0 17.8 136 162-305 822-982 (1139)
250 3spa_A Mtrpol, DNA-directed RN 92.5 0.58 2E-05 51.8 10.9 100 121-223 129-237 (1134)
251 4fhn_B Nucleoporin NUP120; pro 92.4 2.4 8.3E-05 48.0 16.6 168 120-290 844-1050(1139)
252 2ff4_A Probable regulatory pro 92.0 2.3 7.7E-05 41.9 13.9 129 124-266 121-253 (388)
253 2ff4_A Probable regulatory pro 89.3 11 0.00038 36.9 16.1 54 160-214 179-232 (388)
254 4b4t_R RPN7, 26S proteasome re 89.1 7.1 0.00024 38.9 14.7 97 153-249 132-237 (429)
255 2wpv_A GET4, UPF0363 protein Y 87.9 8.1 0.00028 36.7 13.4 134 123-285 18-158 (312)
256 4ady_A RPN2, 26S proteasome re 84.1 9.5 0.00033 41.9 13.0 126 120-247 457-587 (963)
257 4ady_A RPN2, 26S proteasome re 82.6 29 0.00099 38.2 16.0 153 128-289 384-552 (963)
258 4b4t_S RPN3, 26S proteasome re 81.1 7 0.00024 39.9 9.9 61 188-248 232-298 (523)
259 2p58_C Putative type III secre 80.7 18 0.00062 28.1 9.9 74 166-245 21-94 (116)
260 1qsa_A Protein (soluble lytic 80.5 52 0.0018 34.3 16.8 102 111-214 245-346 (618)
261 4b4t_S RPN3, 26S proteasome re 79.0 1.6 5.3E-05 44.6 4.4 69 222-292 233-301 (523)
262 2uwj_G Type III export protein 78.8 18 0.00061 28.1 9.1 75 166-246 20-94 (115)
263 2wpv_A GET4, UPF0363 protein Y 76.4 53 0.0018 31.1 20.8 27 264-290 191-217 (312)
264 1qsa_A Protein (soluble lytic 75.3 83 0.0028 32.8 24.1 119 164-289 226-347 (618)
265 4gq2_M Nucleoporin NUP120; bet 71.6 64 0.0022 35.6 15.3 83 161-248 819-925 (950)
266 3lpz_A GET4 (YOR164C homolog); 69.1 82 0.0028 30.1 21.2 69 219-289 135-215 (336)
267 1wy6_A Hypothetical protein ST 68.3 17 0.00058 30.2 7.1 52 197-248 101-153 (172)
268 3kae_A CDC27, possible protein 65.9 65 0.0022 27.8 16.7 39 266-304 119-157 (242)
269 2ynq_A ESSB; membrane protein, 60.7 39 0.0013 28.5 8.2 22 193-214 79-100 (161)
270 4b4t_O 26S proteasome regulato 59.8 71 0.0024 31.1 11.5 94 195-288 84-196 (393)
271 2pm7_A Protein WEB1, protein t 53.9 1.5E+02 0.005 29.0 12.5 17 305-321 348-364 (399)
272 1ya0_A SMG-7 transcript varian 50.1 73 0.0025 32.2 9.9 75 157-232 157-232 (497)
273 3bu8_A Telomeric repeat-bindin 48.6 67 0.0023 28.5 8.0 38 32-69 115-152 (235)
274 3ph0_C ASCG; type III secretio 47.3 29 0.001 23.7 4.2 40 167-207 21-60 (61)
275 3ax2_A Mitochondrial import re 46.2 48 0.0016 24.0 5.7 39 33-71 19-57 (73)
276 4b4t_O 26S proteasome regulato 45.7 2.2E+02 0.0074 27.6 13.5 23 191-213 131-153 (393)
277 3ax2_A Mitochondrial import re 45.7 36 0.0012 24.6 4.9 33 267-299 23-55 (73)
278 2ijq_A Hypothetical protein; s 42.4 1E+02 0.0036 25.9 8.1 61 191-251 36-106 (161)
279 2kig_A Inositol polyphosphate 41.1 13 0.00044 30.3 2.1 19 376-398 136-155 (161)
280 3mkr_B Coatomer subunit alpha; 41.0 1.7E+02 0.0058 27.6 10.2 27 34-60 105-131 (320)
281 2w2u_A Hypothetical P60 katani 40.8 53 0.0018 24.3 5.4 40 21-60 9-48 (83)
282 2cwy_A Hypothetical protein TT 39.7 1.2E+02 0.0041 22.9 7.7 66 268-335 8-86 (94)
283 2rpa_A Katanin P60 ATPase-cont 39.5 26 0.00089 25.8 3.4 29 32-60 13-41 (78)
284 3esl_A Checkpoint serine/threo 39.2 2E+02 0.0067 25.2 11.4 53 234-291 93-145 (202)
285 1wy6_A Hypothetical protein ST 38.4 1.7E+02 0.0058 24.3 13.1 143 35-215 11-153 (172)
286 3lxu_X Tripeptidyl-peptidase 2 36.7 5.3E+02 0.018 29.5 16.8 52 22-77 1102-1153(1354)
287 3t5v_B Nuclear mRNA export pro 35.9 51 0.0017 33.0 6.0 64 122-185 180-254 (455)
288 3mv2_A Coatomer subunit alpha; 35.7 1.5E+02 0.005 28.1 8.8 27 34-60 117-143 (325)
289 2ijq_A Hypothetical protein; s 33.7 1.6E+02 0.0054 24.8 7.9 59 122-180 36-103 (161)
290 1om2_A Protein (mitochondrial 33.6 1.5E+02 0.005 22.6 6.9 33 267-299 26-58 (95)
291 4b0z_A RPN12, 26S proteasome r 33.2 2.6E+02 0.0087 24.8 11.2 93 228-320 64-161 (229)
292 1ya0_A SMG-7 transcript varian 31.1 1.6E+02 0.0055 29.7 8.9 59 190-248 155-214 (497)
293 3bu8_A Telomeric repeat-bindin 29.9 2.3E+02 0.008 25.1 8.4 47 191-237 118-165 (235)
294 1om2_A Protein (mitochondrial 28.9 1.4E+02 0.0049 22.7 6.1 41 32-72 21-61 (95)
295 2v6y_A AAA family ATPase, P60 28.4 1.1E+02 0.0037 22.5 5.4 31 30-60 10-40 (83)
296 3bqo_A Telomeric repeat-bindin 26.6 2.4E+02 0.0084 24.6 7.9 24 110-133 56-79 (211)
297 4a1g_A Mitotic checkpoint seri 26.6 2.8E+02 0.0094 23.0 10.0 46 204-249 82-130 (152)
298 3lvg_A Clathrin heavy chain 1; 25.1 1.9 6.5E-05 43.8 -6.4 96 219-335 53-149 (624)
299 3bqo_A Telomeric repeat-bindin 25.0 1.1E+02 0.0038 26.7 5.4 40 32-71 118-157 (211)
300 3re2_A Predicted protein; meni 24.7 4.8E+02 0.016 25.2 10.6 69 219-289 254-324 (472)
301 2nsz_A Programmed cell death p 23.1 2.8E+02 0.0097 22.0 7.9 42 193-234 13-54 (129)
302 4a5x_A MITD1, MIT domain-conta 22.8 1E+02 0.0035 22.9 4.3 28 32-59 17-44 (86)
303 3dza_A Uncharacterized putativ 22.8 3.7E+02 0.013 23.2 9.8 120 120-248 37-178 (191)
304 2ion_A PDCD4, programmed cell 22.2 3.3E+02 0.011 22.4 7.9 42 192-233 14-55 (152)
305 3u84_A Menin; MLL, JUND, ledgf 22.1 5.7E+02 0.02 25.1 10.6 69 219-289 276-346 (550)
306 3dza_A Uncharacterized putativ 21.9 2.1E+02 0.0071 24.8 6.6 61 155-215 111-178 (191)
307 3t5v_B Nuclear mRNA export pro 21.9 5.8E+02 0.02 25.2 11.0 121 192-315 181-317 (455)
308 3esl_A Checkpoint serine/threo 21.8 4E+02 0.014 23.2 12.0 77 173-249 58-144 (202)
309 2uwj_G Type III export protein 21.6 2.9E+02 0.0098 21.4 6.5 77 131-214 19-95 (115)
310 2p58_C Putative type III secre 21.5 2.9E+02 0.0098 21.4 7.0 77 131-214 20-96 (116)
311 2crb_A Nuclear receptor bindin 21.4 1.5E+02 0.0052 22.4 4.8 26 264-289 18-43 (97)
312 2crb_A Nuclear receptor bindin 21.0 1.8E+02 0.0063 22.0 5.2 26 225-250 20-45 (97)
313 4aez_C MAD3, mitotic spindle c 20.9 3.4E+02 0.012 24.0 8.0 76 172-248 97-178 (223)
314 2cwy_A Hypothetical protein TT 20.6 1.9E+02 0.0066 21.7 5.5 56 194-251 8-70 (94)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=1.9e-20 Score=187.76 Aligned_cols=295 Identities=13% Similarity=0.072 Sum_probs=197.2
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.++.|...++..+..+ +....++..+|.++..+|++++|+..|++++..+|++..++...+..+...++...
T Consensus 48 ~~~~a~~~~~~a~~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQN--------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH
T ss_pred CHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHH
Confidence 4567777777777533 23446678888888899999999999999888888887766544444444444444
Q ss_pred hhHHHHhhhhhhhhhhhHHH-----------------HHHHhhc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 012265 84 VNDSLKKLDRIKEKDMQNFQ-----------------LARVLDL--RLSPKQREAIYANRVLLLLHANKMDQARELVAAL 144 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~-----------------~~~~l~~--kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l 144 (467)
+...+..+... .|+... ....++. ++. +.....+++.+.++...|++++|...++++
T Consensus 120 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 120 AVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44433333222 111000 0000000 000 112345667777778888888888888888
Q ss_pred cccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265 145 PDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV 223 (467)
Q Consensus 145 ~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~ 223 (467)
+..+|++..++...+.++...|++++|+..+++++..+|++... +..++.+|..+|++++|+..|+++++..+ .+.++
T Consensus 196 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 274 (388)
T 1w3b_A 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 88888887777777777888888888888888888888877654 47778888888888888888888877654 56677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHH
Q 012265 224 ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVT 302 (467)
Q Consensus 224 ~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~ 302 (467)
..++.+|...|++++|+.+|++++... |.+ ...+..+|.++...|++++|..+|+++++.+|+ ..++..+..
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLC----PTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC----ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 777888888888888888888877652 111 234555778888888888888888888877765 455666666
Q ss_pred Hh-ccCChhHHHHHHhc
Q 012265 303 TS-AHVDVDKAESYEKR 318 (467)
Q Consensus 303 a~-~~~d~~kA~~l~~~ 318 (467)
++ ...+.+.|..+.+.
T Consensus 348 ~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHTTTCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 65 34456777666543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=3.9e-20 Score=185.48 Aligned_cols=296 Identities=11% Similarity=0.048 Sum_probs=201.4
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.++.|++.|.+.+..+ + +-..++..++.++..+|++++|...++.++..+|.+..++...+..+...++
T Consensus 14 ~~~~A~~~~~~~~~~~---p-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~--- 82 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQE---P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ--- 82 (388)
T ss_dssp CHHHHHHHHHHHHHHC---T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC---C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---
Confidence 4678999999888754 2 2235677899999999999999999999999999998888766555544443
Q ss_pred hhHHHHhhhhhhhhhhhHHH----HHHHh--hcCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 012265 84 VNDSLKKLDRIKEKDMQNFQ----LARVL--DLRLS------------PKQREAIYANRVLLLLHANKMDQARELVAALP 145 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~----~~~~l--~~kL~------------~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~ 145 (467)
..++...+.+.....|+... +...+ ..+.. .+....++.+.+.++...|++++|...+++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444433222222110 00000 00000 00112345566777777777777777777777
Q ss_pred ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHH
Q 012265 146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVA 224 (467)
Q Consensus 146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~ 224 (467)
..+|++..++...+.++...|++++|+..+++++..+|++... ++.++.++...|++++|+..|++++.+.+ ++.++.
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA-YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 7777777777777777777778888888888877777777664 37777788888888888888877776554 456677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTT 303 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a 303 (467)
.++.+|...|++++|+..|++++... | .....+..+|.++...|++++|..+|+++++.+|+ ..++..+..+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ----P---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC----S---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 77888888888888888888877631 1 12234566788888888888888888888888764 5666666666
Q ss_pred hc-cCChhHHHHHHhc
Q 012265 304 SA-HVDVDKAESYEKR 318 (467)
Q Consensus 304 ~~-~~d~~kA~~l~~~ 318 (467)
+. ..+.+.|..+..+
T Consensus 315 ~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHTTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 63 4557777766654
No 3
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1e-19 Score=176.67 Aligned_cols=269 Identities=11% Similarity=0.048 Sum_probs=219.7
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
..+.+.+|.++..+|++++|+.+|++++..+|.+...+...+..+...+ +..++...+.++....++
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~---------- 88 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN---KANELFYLSHKLVDLYPS---------- 88 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh---hHHHHHHHHHHHHHhCcC----------
Confidence 3567889999999999999999999999999988877764444444443 455555555444332211
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHAN-KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~ 189 (467)
...++++.+.+++..| ++++|...+++++..+|++..++...|.++...|++++|+..+++++...|++....
T Consensus 89 ------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 162 (330)
T 3hym_B 89 ------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162 (330)
T ss_dssp ------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred ------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence 2246788999999999 999999999999999999999999999999999999999999999999999986654
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC--chHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED--NKLSVIMQE 266 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~--~~~~~ll~~ 266 (467)
+.+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+..|++++...+...... +....++..
T Consensus 163 -~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 -LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 7899999999999999999999998765 677888999999999999999999999998764322110 222235667
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhcC
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKRL 319 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~L 319 (467)
+|.++...|++++|...|+++++.+|+ ..++..+..++ ...+.+.|..+..+.
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 899999999999999999999999875 56777777776 456788998887664
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.6e-19 Score=189.33 Aligned_cols=285 Identities=10% Similarity=0.004 Sum_probs=229.2
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
+..|.+++.+.+.. + .-..++..+|.+|...|++++|+.+|++++...|.+..++......+...+ +.
T Consensus 288 ~~~A~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 355 (597)
T 2xpi_A 288 LRRAEDYLSSINGL----E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG---EK 355 (597)
T ss_dssp HHHHHHHHHTSTTG----G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT---CH
T ss_pred HHHHHHHHHHhhcC----C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC---CH
Confidence 45677777666642 1 234678899999999999999999999999999988777665544443333 44
Q ss_pred hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265 85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 164 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~ 164 (467)
.++...+.++....+ ....++++.+.++...|++++|.+.+++++..+|++..++...+.++..
T Consensus 356 ~~A~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 356 NKLYLISNDLVDRHP----------------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp HHHHHHHHHHHHHCT----------------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc----------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 555555544322211 1234677889999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265 165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVL 243 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l 243 (467)
.|++++|+.+|++++...|++... +..++.+|...|++++|+.+|+++++..+ ++.++..++.+|.+.|++++|+.+|
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTHLP-YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCSHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999988765 48899999999999999999999987654 6788889999999999999999999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
++++...+..+..+......+..+|.++...|++++|..+|+++++.+|+ ..++..+..+| ...+.+.|..+.++
T Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 499 QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99998765432222223456777899999999999999999999999974 67777887777 45668888777654
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=9.1e-19 Score=171.57 Aligned_cols=295 Identities=10% Similarity=0.042 Sum_probs=225.5
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
-+..|...+++.+..+. +...++..+|.++..+|++++|+..|++++...|.+..++...+..+...+ +
T Consensus 18 ~~~~A~~~~~~~l~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~ 86 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDP--------DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG---K 86 (359)
T ss_dssp CHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---C
T ss_pred CHHHHHHHHHHHHhhCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC---C
Confidence 35678888888876432 223578899999999999999999999999999988877765555444443 4
Q ss_pred hhHHHHhhhhhhhhhh---hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDM---QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA 160 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~---~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~ 160 (467)
..++...+.+.....+ +.......+ .........++.+.++...|++++|...++.++..+|++..++...+.
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQL----VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHH----HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4555555554433322 221111111 001112234566899999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHH------------HHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVA------------TLV 227 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~------------~l~ 227 (467)
++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|+++++..+ .+..+. .++
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEA-FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 48999999999999999999999987654 333322 347
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK-LSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS- 304 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~-~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~- 304 (467)
.++...|++++|+..|++++... +.+.. ...++..+|.++...|++++|...|+++++.+|+ ..++..+..++
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78999999999999999999753 22222 2234556799999999999999999999999975 67777777776
Q ss_pred ccCChhHHHHHHhc
Q 012265 305 AHVDVDKAESYEKR 318 (467)
Q Consensus 305 ~~~d~~kA~~l~~~ 318 (467)
...+.+.|..+.++
T Consensus 318 ~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 318 IEEMYDEAIQDYEA 331 (359)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 45668888777654
No 6
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-19 Score=175.05 Aligned_cols=267 Identities=11% Similarity=0.048 Sum_probs=216.4
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
....|..+|++.+..+.. -..++..++.++..+|++++|...|++++..+|.+..++...+.-+...+ .+
T Consensus 37 ~~~~A~~~~~~~l~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 106 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPF--------HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG--HK 106 (330)
T ss_dssp CHHHHHHHHHHHHHHCTT--------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC--SC
T ss_pred CHHHHHHHHHHHHHcCCC--------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh--hh
Confidence 357788888888865432 22445668899999999999999999999999998888776554443332 14
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV 163 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~ 163 (467)
...+...+.+.....++ ...++++.+.++...|++++|...+++++..+|++..++...+.++.
T Consensus 107 ~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 107 NEHARRYLSKATTLEKT----------------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHTTCTT----------------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 55566666554332211 12467889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----------CCChhHHHHHHHHHHHc
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI----------QHMPATVATLVALKERA 233 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----------~~~p~~~~~l~~ly~~~ 233 (467)
..|++++|+..+++++..+|++... +..+|.+|...|++++|+..|+++++. ...+.++..++.+|...
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFV-MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 489999999999999999999999753 22456788999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS 304 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~ 304 (467)
|++++|+..|++++... +.+ ..++..+|.++...|++++|...|+++++.+|+ ..++..+..++
T Consensus 250 g~~~~A~~~~~~a~~~~----~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI----PQN---ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHHHHHHS----TTC---SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC----ccc---hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99999999999999763 222 234666899999999999999999999999975 56677777666
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=8.8e-19 Score=178.43 Aligned_cols=296 Identities=10% Similarity=0.038 Sum_probs=224.9
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.+..|..++++.+..+ ++...++..+|.++..+|++++|+..|++++..+|.+..++...+..+...+ +
T Consensus 41 ~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~ 109 (450)
T 2y4t_A 41 QLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG---K 109 (450)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---C
Confidence 3566777777777532 1234678889999999999999999999999999988777765544444333 4
Q ss_pred hhHHHHhhhhhhhhhhhHH---HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNF---QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAA 160 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~---~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~ 160 (467)
..++...+.+.....++.. .....+ .........++.+.+++..|++++|...++.++..+|++..++...+.
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQL----IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHH----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 5555555554433322211 111111 000112235677889999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH------------H
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL------------V 227 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l------------~ 227 (467)
++...|++++|+..+++++..+|++...+ +.+|.+|...|++++|+..|++++...+ .+..+..+ +
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLKNDNTEAF-YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHCSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754 8999999999999999999999987654 44444444 8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK-LSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS- 304 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~-~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~- 304 (467)
.++...|++++|+.+|++++... +.++. ...++..+|.++...|++++|+..|++++..+|+ ..++..+..++
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 89999999999999999999753 22222 2335666899999999999999999999999975 67777777776
Q ss_pred ccCChhHHHHHHhcC
Q 012265 305 AHVDVDKAESYEKRL 319 (467)
Q Consensus 305 ~~~d~~kA~~l~~~L 319 (467)
...+.+.|..+.++.
T Consensus 341 ~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 341 IEEMYDEAIQDYETA 355 (450)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 566788888777653
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=4.6e-20 Score=183.18 Aligned_cols=260 Identities=10% Similarity=-0.011 Sum_probs=204.0
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..++.+|.++..+|++++|+.+|++++..+|.+..++...+.-+... ++...+...+.+.....|+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~----------- 131 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN---ENEQAAIVALQRCLELQPN----------- 131 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT-----------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCC-----------
Confidence 34789999999999999999999999999999988877555544433 3455666666554332221
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH----------HHHHHhcCChhHHHHHHHHHHHh
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ----------AAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~----------a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
...++++.+.++...|++++|...+++++..+|++....... +.++...|++++|+..+++++..
T Consensus 132 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 132 -----NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 235788999999999999999999999999998876554433 77888999999999999999999
Q ss_pred CCC--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc
Q 012265 182 LPD--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN 258 (467)
Q Consensus 182 ~P~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~ 258 (467)
+|+ +... ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++... +
T Consensus 207 ~p~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p--- 278 (365)
T 4eqf_A 207 NGDMIDPDL-QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----P--- 278 (365)
T ss_dssp SCSSCCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---
T ss_pred CcCccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C---
Confidence 999 7765 48999999999999999999999998665 67788999999999999999999999999862 2
Q ss_pred hHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-------------HHHHHHHHHHhccCC-hhHHHHHHhc
Q 012265 259 KLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-------------IEALVGLVTTSAHVD-VDKAESYEKR 318 (467)
Q Consensus 259 ~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-------------~~ala~Lv~a~~~~d-~~kA~~l~~~ 318 (467)
.....+..+|.++...|++++|...|+++++..|+ ..++..|..++...+ .+.+.....+
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 22345677899999999999999999999998865 355666777765443 5666665543
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=4.2e-18 Score=166.80 Aligned_cols=263 Identities=16% Similarity=0.132 Sum_probs=208.7
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..++.+|.++...|++++|+..|++++..+|.+..++...+..+...+ +...+...+.+.....|+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~----------- 69 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMD----------- 69 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCC-----------
Confidence 457889999999999999999999999999999888776555554443 455555555544322211
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---CCchHHHHH------------HHHHHhcCChhHHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---DSVMPLLLQ------------AAVLVRENKAGKAEELLG 176 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~~~~~~ll~------------a~l~~~~~~~~~A~~~l~ 176 (467)
...++++.+.+++..|++++|...+++++..+| ++..++... |.++...|++++|+..++
T Consensus 70 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 70 -----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 224678999999999999999999999999999 777766544 678899999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 012265 177 QFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT 255 (467)
Q Consensus 177 ~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~ 255 (467)
+++..+|++... +..+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+..|++++...+
T Consensus 145 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---- 219 (359)
T 3ieg_A 145 KILEVCVWDAEL-RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ---- 219 (359)
T ss_dssp HHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHhCCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc----
Confidence 999999999875 48999999999999999999999998765 778888999999999999999999999987532
Q ss_pred CCchHHHH---------HHHHHHHHHHCCChhHHHHHHHHHHHhcCCH-----HHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 256 EDNKLSVI---------MQEAASFKLRHGREEDASHLFEELVKTHGSI-----EALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 256 ~~~~~~~l---------l~~la~~~l~~g~~~~A~~~le~ll~~~pd~-----~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
+....... ....|.++...|++++|+..|++++...|+. .++..+..++ ...+.+.|..+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 22221111 1234888999999999999999999999863 2233445555 45668888777654
No 10
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=2.6e-19 Score=165.92 Aligned_cols=198 Identities=19% Similarity=0.108 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
..+++.+|.++..+|++++|+..|++++..+|++..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a------------------------------------------- 41 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA------------------------------------------- 41 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------------------------
Confidence 3567899999999999999999999999998865432
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhc-----------CChhHHHHHHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE-----------NKAGKAEELLGQFA 179 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~-----------~~~~~A~~~l~~~l 179 (467)
+++.+.+++..|++++|+..++++++.+|++..++...+.++... |++++|+..|++++
T Consensus 42 ----------~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 111 (217)
T 2pl2_A 42 ----------LYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111 (217)
T ss_dssp ----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence 345577778889999999999999999999999999999999999 99999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch
Q 012265 180 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK 259 (467)
Q Consensus 180 ~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~ 259 (467)
+.+|++.... +.+|.+|...|++++|+..|++++++..++.++..++.+|..+|++++|+..|++++... |+
T Consensus 112 ~~~P~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----P~--- 183 (217)
T 2pl2_A 112 RVNPRYAPLH-LQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQA----PK--- 183 (217)
T ss_dssp HHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TT---
T ss_pred HhCcccHHHH-HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---
Confidence 9999998764 899999999999999999999998765667888899999999999999999999999863 22
Q ss_pred HHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 260 LSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
...++..+|.++...|++++|+..|+++.-
T Consensus 184 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 184 DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp CHHHHHHHHHHHTC----------------
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 224566689999999999999999998753
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.7e-19 Score=175.36 Aligned_cols=258 Identities=10% Similarity=0.023 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..++.+|.++..+|++++|+..|++++..+|.+..++...+.-+... ++...+...+.+.....|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~------------ 129 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN---EQELLAISALRRCLELKP------------ 129 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---cCHHHHHHHHHHHHhcCC------------
Confidence 45788999999999999999999999999999988776554444333 345556655554432221
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHH----------------HHHHHHHhcCChhHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL----------------LQAAVLVRENKAGKAEELL 175 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~l----------------l~a~l~~~~~~~~~A~~~l 175 (467)
....++++.+.++...|++++|...+++++..+|++..... ..+.++ ..|++++|+..+
T Consensus 130 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~ 204 (368)
T 1fch_A 130 ----DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELF 204 (368)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHH
Confidence 12346788999999999999999999999999999876643 233444 899999999999
Q ss_pred HHHHHhCCC--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 176 GQFAEKLPD--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 176 ~~~l~~~P~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
++++..+|+ +... ++.+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+..|++++...
T Consensus 205 ~~a~~~~p~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 281 (368)
T 1fch_A 205 LAAVRLDPTSIDPDV-QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-- 281 (368)
T ss_dssp HHHHHHSTTSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhCcCcccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 999999999 6654 48899999999999999999999987655 67788899999999999999999999999752
Q ss_pred hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC------------HHHHHHHHHHhcc-CChhHHHHHHh
Q 012265 253 AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS------------IEALVGLVTTSAH-VDVDKAESYEK 317 (467)
Q Consensus 253 ~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd------------~~ala~Lv~a~~~-~d~~kA~~l~~ 317 (467)
+ .....+..+|.++...|++++|...|++++...|+ ..++..+..++.. .+.+.|..+..
T Consensus 282 --~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 282 --P---GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp --T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred --C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 1 22245667899999999999999999999998864 3667778777744 55777776653
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.8e-18 Score=167.55 Aligned_cols=259 Identities=12% Similarity=-0.012 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..++.+|.++...|++++|+.+|++++...|.+..++...+..+... ++...+...+.+.....++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~----------- 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN---EKDGLAIIALNHARMLDPK----------- 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCcC-----------
Confidence 44688999999999999999999999999999888776554444333 3455565555544322211
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHH--------------HH-HHHhcCChhHHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQ--------------AA-VLVRENKAGKAEELLG 176 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~--------------a~-l~~~~~~~~~A~~~l~ 176 (467)
...++++.+.++...|++++|...+++++..+|.+....... +. ++...|++++|+..++
T Consensus 88 -----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 88 -----DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 234678899999999999999999999999999987766554 44 5778899999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 012265 177 QFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT 255 (467)
Q Consensus 177 ~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~ 255 (467)
+++...|++... ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++... +
T Consensus 163 ~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~ 237 (327)
T 3cv0_A 163 AALEMNPNDAQL-HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN----P 237 (327)
T ss_dssp HHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T
T ss_pred HHHhhCCCCHHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C
Confidence 999999998765 48999999999999999999999987654 67778899999999999999999999998752 1
Q ss_pred CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-------------HHHHHHHHHHhc-cCChhHHHHHHh
Q 012265 256 EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-------------IEALVGLVTTSA-HVDVDKAESYEK 317 (467)
Q Consensus 256 ~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-------------~~ala~Lv~a~~-~~d~~kA~~l~~ 317 (467)
. ....+..+|.++...|++++|...|++++...|+ ..++..+..++. ..+.+.|..+..
T Consensus 238 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 238 G---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1 1235666899999999999999999999999877 355666777764 455788877654
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=5.7e-18 Score=172.40 Aligned_cols=265 Identities=16% Similarity=0.136 Sum_probs=209.5
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
-..+++.+|.++...|++++|+.+|++++...|.+..++...+..+... ++..+++..+.+.....|+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~--------- 92 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM---GKSKAALPDLTKVIQLKMD--------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCC---------
Confidence 3467889999999999999999999999999999887776555444444 3455666655544332221
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHH------------HHHHHHhcCChhHHHHH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLL------------QAAVLVRENKAGKAEEL 174 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll------------~a~l~~~~~~~~~A~~~ 174 (467)
...++++.+.++...|++++|...+++++..+|++. .++.. .|.++...|++++|+..
T Consensus 93 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 93 -------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 235678899999999999999999999999999987 55433 35568899999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012265 175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNA 253 (467)
Q Consensus 175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~ 253 (467)
+++++...|++... ++.+|.+|...|++++|+.+|++++...+ ++.++..++.+|...|++++|+..|++++...
T Consensus 166 ~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 241 (450)
T 2y4t_A 166 LDKILEVCVWDAEL-RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--- 241 (450)
T ss_dssp HHHHHHHCTTCHHH-HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCChHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 99999999999875 48999999999999999999999987654 67888899999999999999999999998652
Q ss_pred ccCCchHHHHH---------HHHHHHHHHCCChhHHHHHHHHHHHhcCCH-----HHHHHHHHHhc-cCChhHHHHHHhc
Q 012265 254 MTEDNKLSVIM---------QEAASFKLRHGREEDASHLFEELVKTHGSI-----EALVGLVTTSA-HVDVDKAESYEKR 318 (467)
Q Consensus 254 ~~~~~~~~~ll---------~~la~~~l~~g~~~~A~~~le~ll~~~pd~-----~ala~Lv~a~~-~~d~~kA~~l~~~ 318 (467)
++.......+ ..+|.++...|++++|+.+|++++...|+. ..+..++.++. ..+.+.|..+...
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2222221111 223889999999999999999999998862 34556666664 4567888877654
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.82 E-value=5.3e-18 Score=179.24 Aligned_cols=267 Identities=14% Similarity=0.061 Sum_probs=215.5
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.+..|..++++.+..+. +-..++..++.++...|++++|..+|+.++...|.+..++...+..+... ++
T Consensus 320 ~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 388 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDP--------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV---NK 388 (597)
T ss_dssp CHHHHHHHHHHHHHHCT--------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT---TC
T ss_pred CHHHHHHHHHHHHHcCc--------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh---cc
Confidence 35778888888886431 12245778899999999999999999999999998887776554444333 45
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV 163 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~ 163 (467)
..++...+.+.....+ .....+++.+.++...|++++|.+.+++++..+|++...+...+.++.
T Consensus 389 ~~~A~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDP----------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5666666654432211 122467788999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC------CCC--hhHHHHHHHHHHHcCC
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI------QHM--PATVATLVALKERAGD 235 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~------~~~--p~~~~~l~~ly~~~g~ 235 (467)
..|++++|+..++++++..|++... +..++.+|...|++++|+..|+++++. .+. ..++..++.+|...|+
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLL-LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998875 489999999999999999999999765 332 4578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc
Q 012265 236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA 305 (467)
Q Consensus 236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~ 305 (467)
+++|+.+|++++... +++ ...+..+|.++...|++++|..+|+++++.+|+ ..+...|..+|.
T Consensus 532 ~~~A~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 532 YDAAIDALNQGLLLS----TND---ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHHS----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC----CCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999998752 222 235667899999999999999999999999986 566666665553
No 15
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=1.3e-18 Score=164.78 Aligned_cols=251 Identities=10% Similarity=0.025 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
+++.+|.++..+|++++|+..|++++..+|.+..++...+..+... ++..+++..+.+......+ ...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~---------~~~ 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL---AKYDLAQKDIETYFSKVNA---------TKA 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHT---TCHHHHHHHHHHHHTTSCT---------TTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhccCc---------hhH
Confidence 3578999999999999999999999999999887666554444333 3455666655544321100 011
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
...++++.+.++...|++++|+..+++++..+|++..++...|.++...|++++|+..++++++.+|++.... +.
T Consensus 73 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~ 147 (272)
T 3u4t_A 73 ----KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF-YE 147 (272)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH-HH
T ss_pred ----HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHH-HH
Confidence 1235789999999999999999999999999999999999999999999999999999999999999998754 88
Q ss_pred HHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhccC-CchHHHHHHHH
Q 012265 193 RAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD---IDGAAAVLDSAIKWWLNAMTE-DNKLSVIMQEA 267 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~---~~~A~~~l~~al~~~~~~~~~-~~~~~~ll~~l 267 (467)
+|......+++++|+..|+++++..+ ++..+..++.++...|+ +++|+..|++++......+.. ...+..++..+
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 99455556799999999999998765 56677789999999999 889999999999876432211 12233567778
Q ss_pred HHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHH
Q 012265 268 ASFKLRHGREEDASHLFEELVKTHGS-IEALVGL 300 (467)
Q Consensus 268 a~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~L 300 (467)
|.++...|++++|...|+++++.+|+ ..+.-++
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999999999986 4444443
No 16
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=1.8e-18 Score=160.12 Aligned_cols=190 Identities=14% Similarity=0.050 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
.++++.+.+++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a-~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG-YMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999875 489999999
Q ss_pred Hc-----------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265 199 AA-----------NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE 266 (467)
Q Consensus 199 ~~-----------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~ 266 (467)
.. |++++|+..|++++++.+ ++.++..++.+|..+|++++|+..|++++... + ...++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~---~~~~~~~ 156 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-----D---TPEIRSA 156 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C---CHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----c---chHHHHH
Confidence 99 999999999999998776 67788899999999999999999999999862 1 1235677
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhc-cCChhHHHHHHh
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSA-HVDVDKAESYEK 317 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~-~~d~~kA~~l~~ 317 (467)
+|.++...|++++|+..|+++++.+|+ ..++..+..++. ..+.+.|.....
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 899999999999999999999999986 567777777764 445677755543
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.1e-17 Score=170.57 Aligned_cols=263 Identities=17% Similarity=0.153 Sum_probs=208.8
Q ss_pred hHHHHHHHhhhhhc-----CCCC-ChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhh
Q 012265 4 MYLIFVRIGQETLT-----DDNF-AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77 (467)
Q Consensus 4 ~l~~A~~~~~~~l~-----~~~~-~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~ 77 (467)
....|...+++.+. .+.. ...+.......++..+|.++...|++++|...|++++...|. ..++...+.-+..
T Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 204 SYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMAD 282 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHH
Confidence 36677888877776 3211 222334566788999999999999999999999999999998 5555544444444
Q ss_pred ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH
Q 012265 78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL 157 (467)
Q Consensus 78 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll 157 (467)
.++...+...+..+.. ..++ ...++++.+.+++..|++++|...++.++..+|++..++..
T Consensus 283 ~~~~~~A~~~~~~~~~---~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALK---LDSN----------------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp SSCCTTGGGHHHHHHT---TCTT----------------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred CCCHHHHHHHHHHHhh---cCcC----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 4444444444443322 1111 12467889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Ch------hHHHHHHHHH
Q 012265 158 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MP------ATVATLVALK 230 (467)
Q Consensus 158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p------~~~~~l~~ly 230 (467)
.+.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|+++++..+ .+ .++..++.+|
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEV-PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcccCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765 48999999999999999999999986433 22 3788899999
Q ss_pred HH---cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 231 ER---AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 231 ~~---~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
.. .|++++|+..|++++... ++ ....+..+|.++...|++++|...|++++..+|+.
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLD----PR---SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHC----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhC----cc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 99 999999999999999752 11 22356668999999999999999999999999874
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=4.2e-17 Score=169.63 Aligned_cols=262 Identities=14% Similarity=0.147 Sum_probs=209.3
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.+..|..++++.+..+.- ..+....++.++..+|.++...|++++|+..|+.++..+|. ..++...+..+. ..++
T Consensus 217 ~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~---~~~~ 291 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA---DKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC---CSSC
T ss_pred HHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH---HhcC
Confidence 567888899888875532 33455567788999999999999999999999999999997 555544433332 2345
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLV 163 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~ 163 (467)
...+...+.+.....++ ...++++.+.+++..|++++|+..+++++..+|++..++...|.++.
T Consensus 292 ~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPE----------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp CHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56666666554332211 23468899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHHHHHc---
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERA--- 233 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~ly~~~--- 233 (467)
..|++++|+..++++++.+|++... +..+|.+|...|++++|+..|+++++..+ ..+.+..++.+|...
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEV-PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998765 48999999999999999999999975321 334456778889998
Q ss_pred -------CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 234 -------GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 234 -------g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
|++++|+..|++++... + ....++..+|.++...|++++|...|+++++..|+.
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~----p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELD----P---RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHC----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred cchhhhHhHHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999753 2 122456778999999999999999999999999763
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-17 Score=153.45 Aligned_cols=232 Identities=11% Similarity=-0.024 Sum_probs=187.5
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
+.++..+|.++..+|++++|+..|++++... .+..++...+..+... ++...+...+.+.....++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~--------- 71 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK---GEYETAISTLNDAVEQGREM--------- 71 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCccc---------
Confidence 4567899999999999999999999999998 7777666554444333 34555666555543322210
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
.-.......++++.+.++...|++++|...+++++..+|. +.++...|++++|+..+++++..+|++... +
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 142 (258)
T 3uq3_A 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEE-A 142 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-H
T ss_pred ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHH-H
Confidence 0011122467889999999999999999999999998887 345677899999999999999999988765 4
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
+.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++... + .....+..+|.
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~---~~~~~~~~l~~ 215 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----P---NFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---TCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----H---HHHHHHHHHHH
Confidence 8999999999999999999999987654 67788899999999999999999999999753 1 12235666899
Q ss_pred HHHHCCChhHHHHHHHHHHHhc
Q 012265 270 FKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~~ 291 (467)
++...|++++|...|+++++.+
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999998
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-17 Score=172.08 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
+....++++.+.+++..|++++|...++.++..+|+ ..++...+.++...|++++|+..+++++..+|++... ++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~ 311 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV-YYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHH-HHHHH
Confidence 344567778888888999999999999999888888 7777788888889999999999999999998888765 48889
Q ss_pred HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+.+|++++... +.+. .++..+|.++..
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~la~~~~~ 384 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF----PEAP---EVPNFFAEILTD 384 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS----TTCS---HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----ccCH---HHHHHHHHHHHH
Confidence 999999999999999999887654 56677888899999999999999999988753 2222 245567999999
Q ss_pred CCChhHHHHHHHHHHHhcCCH-H------HHHHHHHHhcc----CChhHHHHHHhc
Q 012265 274 HGREEDASHLFEELVKTHGSI-E------ALVGLVTTSAH----VDVDKAESYEKR 318 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~pd~-~------ala~Lv~a~~~----~d~~kA~~l~~~ 318 (467)
.|++++|..+|++++...|+. . ++..+..++.. .+.+.|..+...
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 999999999999999887542 2 66777776644 557888766554
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=3.8e-18 Score=172.03 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=201.0
Q ss_pred HHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265 26 IEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA 105 (467)
Q Consensus 26 ~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 105 (467)
+.++...++..++.++..+|++++|+..|++++..+|++..++...+.-+..+++ +..+++..+.++...+|+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~--d~~eAl~~~~~al~l~P~----- 164 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQPK----- 164 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTT-----
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHCCC-----
Confidence 3445667889999999999999999999999999999999888755554444432 356666666555443332
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
...+++|++.++...|++++|+..+++++..+|++..++...+.++...|++++|+..++++++.+|++
T Consensus 165 -----------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 165 -----------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp -----------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 235789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCChHHH-----HHHHhccccCCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhccC
Q 012265 186 SKIILLARAQVAAA-ANHPFIA-----AESLAKIPDIQH-MPATVATLVALKERAG--DIDGAAAVLDSAIKWWLNAMTE 256 (467)
Q Consensus 186 ~~~~~l~Laql~~~-~g~~~~A-----~~~L~~~~~~~~-~p~~~~~l~~ly~~~g--~~~~A~~~l~~al~~~~~~~~~ 256 (467)
..++ +.++.+|.. .|.+++| +..|++++.+++ ++.++..++.+|...| ++++|+..+.++ . ..
T Consensus 234 ~~a~-~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~----~~-- 305 (382)
T 2h6f_A 234 NSVW-NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q----PS-- 305 (382)
T ss_dssp HHHH-HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T----TT--
T ss_pred HHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c----cC--
Confidence 8764 899999999 6665888 588999998776 6778889999999988 688998888775 2 11
Q ss_pred CchHHHHHHHHHHHHHHCC--------C-hhHHHHHHHHH-HHhcCC-HHHHHHHHHH
Q 012265 257 DNKLSVIMQEAASFKLRHG--------R-EEDASHLFEEL-VKTHGS-IEALVGLVTT 303 (467)
Q Consensus 257 ~~~~~~ll~~la~~~l~~g--------~-~~~A~~~le~l-l~~~pd-~~ala~Lv~a 303 (467)
+....++..+|.++...| + +++|+.+|+++ ++.+|. ...+..+...
T Consensus 306 -p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 306 -HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 222345666899998874 3 58999999999 899986 3445544443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=5.3e-18 Score=164.27 Aligned_cols=274 Identities=15% Similarity=0.016 Sum_probs=202.6
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.+..|..++++.+..+ ++...++..+|.++...|++++|...|++++...|.+..++...+..+... ++
T Consensus 36 ~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~ 104 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE---HN 104 (327)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred cHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc---CC
Confidence 3567888888877643 223467888999999999999999999999999999887776554444333 34
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-HH-HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANR-VL-LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAV 161 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~-al-l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l 161 (467)
...+...+.+.....++.......+.. ... . .....+. +. ++...|++++|...+++++..+|++..++...|.+
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQ-ADV-D-IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC-----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhH-HHH-H-HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 555555555443332221110000000 000 0 0001111 22 47778899999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
+...|++++|+..+++++..+|++... +..+|.+|...|++++|+..|++++...+ ++.++..++.+|...|++++|+
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQL-WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999998875 48999999999999999999999987654 6778889999999999999999
Q ss_pred HHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 241 AVLDSAIKWWLNAMTEDN-----KLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~~~-----~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
..|++++...+....... .....+..+|.++...|++++|..+|++++...|
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999987533110000 0345677789999999999999999998887654
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=9e-18 Score=166.58 Aligned_cols=267 Identities=10% Similarity=-0.029 Sum_probs=197.5
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.+..|..+++..+..+ ++...++..+|.++..+|++++|+..|++++..+|.+..++...+..+... ++
T Consensus 80 ~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~ 148 (365)
T 4eqf_A 80 DLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT---SH 148 (365)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred CHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc---cc
Confidence 3567888888888643 223467899999999999999999999999999999888776555444433 34
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC--CchHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD--SVMPLLLQAAV 161 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~--~~~~~ll~a~l 161 (467)
...+...+.+.....|+.......+ .....+..+.+.++...|++++|+..+++++..+|+ +..++...|.+
T Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKYLVKNK------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHCC-------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHhhh------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 5556665555443322211100000 011234456688999999999999999999999999 77788889999
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
+...|++++|+..|+++++.+|++... +..+|.+|...|++++|+..|++++++.+ ++.++..++.+|..+|++++|+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSL-WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999875 48999999999999999999999998765 5778889999999999999999
Q ss_pred HHHHHHHHHHHHhccC-----CchHHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265 241 AVLDSAIKWWLNAMTE-----DNKLSVIMQEAASFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~-----~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll 288 (467)
..|++++...+..... ......++..++.++...|+.+.|..++++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 9999999887542210 00123467778999999999998887766543
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=2.6e-17 Score=171.27 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|..
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~la~~~~~ 356 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-YIQLACLLYK 356 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Confidence 455666666677777777777777777788887777788888888888888888888888888887654 4788888888
Q ss_pred cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC----
Q 012265 200 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH---- 274 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~---- 274 (467)
.|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++...+........+. .+...|.++...
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG-PLIGKATILARQSSQD 435 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH-HHHHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH-HHHHHHHHHHHHhhcc
Confidence 8888888888888876554 5677788899999999999999999999887655332212222 234468888888
Q ss_pred ------CChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 275 ------GREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 275 ------g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
|++++|...|+++++.+|+ ..++..+..++ ...+.+.|..+..+
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999976 67777777777 45667888777654
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.4e-17 Score=163.00 Aligned_cols=274 Identities=10% Similarity=-0.063 Sum_probs=202.8
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD 83 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~ 83 (467)
.+..|...+++.+..+. +...++..+|.++..+|++++|+..|++++...|.+..++...+.-+... ++
T Consensus 79 ~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---g~ 147 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDP--------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE---SL 147 (368)
T ss_dssp CHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred CHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CC
Confidence 35678888888886432 23457889999999999999999999999999999888776554444333 34
Q ss_pred hhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC--CchHHHHHHHH
Q 012265 84 VNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD--SVMPLLLQAAV 161 (467)
Q Consensus 84 ~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~--~~~~~ll~a~l 161 (467)
...+...+.+.....++.......+..-....+......+.+.++ ..|++++|...+++++..+|+ +..++...|.+
T Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 555555555543332221110000000000000111122345454 889999999999999999999 67778888999
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
+...|++++|+..|++++..+|++... ++.+|.+|...|++++|+..|++++.+.+ .+.++..++.+|...|++++|+
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVRPNDYLL-WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999875 48999999999999999999999987665 6778889999999999999999
Q ss_pred HHHHHHHHHHHHhccC----CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 241 AVLDSAIKWWLNAMTE----DNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~----~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
..|++++...+..... .+....++..+|.++...|++++|..++++.+..
T Consensus 306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999876543100 0112346777899999999999999999877754
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=2.8e-17 Score=146.88 Aligned_cols=170 Identities=14% Similarity=0.083 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 196 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql 196 (467)
...+++|.+.++...|++++|+..++++++.+|++..++...|.++...|++++|+..+.+++...|++.... ..++.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY-YILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH-HHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999999999999998764 889999
Q ss_pred HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265 197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 275 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g 275 (467)
+...++++.|...+.+++...+ ++.++..++.+|..+|++++|+..|++++... +....++..+|.++...|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------PGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------chhhhHHHHHHHHHHHCC
Confidence 9999999999999999987665 67788899999999999999999999999762 222345777899999999
Q ss_pred ChhHHHHHHHHHHHhcCCH
Q 012265 276 REEDASHLFEELVKTHGSI 294 (467)
Q Consensus 276 ~~~~A~~~le~ll~~~pd~ 294 (467)
++++|+..|+++++.+|+.
T Consensus 156 ~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHhCCccC
Confidence 9999999999999988753
No 27
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=7.8e-17 Score=149.48 Aligned_cols=202 Identities=13% Similarity=0.106 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..++.+|.++...|++++|+..|++++...|.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------------------------------------------- 58 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI--------------------------------------------- 58 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHH---------------------------------------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHH---------------------------------------------
Confidence 55788999999999999999999999987664321
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ++
T Consensus 59 --------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~ 129 (243)
T 2q7f_A 59 --------PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL-FY 129 (243)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHH-HH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH-HH
Confidence 234557777888999999999999999999998888899999999999999999999999999998775 48
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF 270 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~ 270 (467)
.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+..|++++... +.+ ...+..+|.+
T Consensus 130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~ 202 (243)
T 2q7f_A 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD----PGH---ADAFYNAGVT 202 (243)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC----TTC---HHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc---HHHHHHHHHH
Confidence 899999999999999999999987654 67778889999999999999999999998752 111 2356668999
Q ss_pred HHHCCChhHHHHHHHHHHHhcCCH
Q 012265 271 KLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 271 ~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
+...|++++|...|+++++.+|+.
T Consensus 203 ~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 203 YAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHccCHHHHHHHHHHHHccCcch
Confidence 999999999999999999999863
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.3e-16 Score=151.92 Aligned_cols=264 Identities=12% Similarity=0.088 Sum_probs=186.2
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
...|...++.... .+++. -....+.++.+|..+|++++|+..++.. +|.+..++... ..++ ....+.
T Consensus 15 y~~ai~~~~~~~~---~~p~~----~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~l-a~~~--~~~~~~ 81 (291)
T 3mkr_A 15 YQQCINEAQRVKP---SSPER----DVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMF-AEYL--ASHSRR 81 (291)
T ss_dssp HHHHHHHHHHSCC---CSHHH----HHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHH-HHHH--HCSTTH
T ss_pred HHHHHHHHHhccc---CCchh----hHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHH-HHHH--cCCCcH
Confidence 4455555544432 33443 1234566788999999999999877542 33232222222 1222 233456
Q ss_pred hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265 85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 164 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~ 164 (467)
..++..++++... .+. +....+++..+.+++..|++++|++.+++ |++..++...+.++..
T Consensus 82 ~~A~~~l~~ll~~-------------~~~-P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 82 DAIVAELDREMSR-------------SVD-VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHHHHS-------------CCC-CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------------ccC-CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Confidence 6666666554321 000 11235678899999999999999999988 8888899999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265 165 ENKAGKAEELLGQFAEKLPDKSKIILLAR--AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA 241 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~L--aql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~ 241 (467)
.|++++|++.|++++..+|++... .+.. ..++...|++++|+.+|+++++..+ ++.++..++.+|..+|++++|+.
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~-~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLT-QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999987532 2333 3555566899999999999987654 77788889999999999999999
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH-HHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 012265 242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED-ASHLFEELVKTHGSIEALVGLVTTSAHVD 308 (467)
Q Consensus 242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~-A~~~le~ll~~~pd~~ala~Lv~a~~~~d 308 (467)
.|++++... |+ ...++..+|.++...|++.+ +..+|+++++.+|+...+..+......||
T Consensus 222 ~l~~al~~~----p~---~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd 282 (291)
T 3mkr_A 222 VLQEALDKD----SG---HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFD 282 (291)
T ss_dssp HHHHHHHHC----TT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999752 22 23357778999999999976 56899999999998655555544434443
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=1.6e-16 Score=141.97 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=143.8
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
|-..|++.+|.+|..+|++++|+..|+++++.+|++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------------- 41 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET----------------------------------------- 41 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----------------------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----------------------------------------
Confidence 556889999999999999999999999999998865332
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
+++.+.++...|++++|...+..+...+|++..+....+.++...++++.|+..+.+++..+|++...
T Consensus 42 ------------~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 109 (184)
T 3vtx_A 42 ------------LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADA 109 (184)
T ss_dssp ------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 23456677778888899999999888899988888888888889999999999999999999998775
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
. ..+|.+|...|++++|+..|++++++++ ++.++..++.+|..+|++++|+..|+++++..
T Consensus 110 ~-~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 110 Y-YKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp H-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 4 8889999999999999999999987765 67788889999999999999999999998753
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=2.9e-16 Score=146.93 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
..+++.+|.++...|++++|+..|++++...|.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------------------------- 72 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD-------------------------------------------- 72 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH--------------------------------------------
Confidence 677899999999999999999999999887664322
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH--hCCCcHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE--KLPDKSKI 188 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~--~~P~~~~~ 188 (467)
++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++. ..|.+...
T Consensus 73 ---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 143 (252)
T 2ho1_A 73 ---------AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143 (252)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH
Confidence 2334566777788888888888888888888888888888888888888888888888888 67776654
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEA 267 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~l 267 (467)
++.+|.+|...|++++|+..|++++...+ .+.++..++.+|...|++++|+.+|++++... +. ....+..+
T Consensus 144 -~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~~~~ 215 (252)
T 2ho1_A 144 -FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG----GQ---NARSLLLG 215 (252)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----CC---CHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cC---cHHHHHHH
Confidence 47888888888888888888888876554 56677788888888888888888888877531 11 12235557
Q ss_pred HHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 268 ASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 268 a~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
+.++...|++++|..+|+++++.+|+.
T Consensus 216 ~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 216 IRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 888888899999999999998888764
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.7e-15 Score=138.32 Aligned_cols=205 Identities=16% Similarity=0.063 Sum_probs=169.9
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
...++..+|.++...|++++|+..|++++...|.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------------------------------- 43 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------------------------------------------- 43 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------------------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH-------------------------------------------
Confidence 4567889999999999999999999999987775422
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhc-CChhHHHHHHHHHHH--hCCCcH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE-NKAGKAEELLGQFAE--KLPDKS 186 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~-~~~~~A~~~l~~~l~--~~P~~~ 186 (467)
++++.+.++...|++++|...+++++..+|++..++...+.++... |++++|+..+++++. .+|++.
T Consensus 44 ----------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 113 (225)
T 2vq2_A 44 ----------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113 (225)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHH
T ss_pred ----------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchH
Confidence 2334577778889999999999999999999988888899999999 999999999999999 666665
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
.. ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|+.+|++++...+ ..+. ..+.
T Consensus 114 ~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~---~~~~ 186 (225)
T 2vq2_A 114 IA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE---VLQA---DDLL 186 (225)
T ss_dssp HH-HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---SCCH---HHHH
T ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCCH---HHHH
Confidence 54 48899999999999999999999987654 577788899999999999999999999987531 0122 2344
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 266 EAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
.++.++...|++++|..+++.++..+|+.
T Consensus 187 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 187 LGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 46778889999999999999999888764
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=5.2e-16 Score=150.49 Aligned_cols=244 Identities=15% Similarity=0.146 Sum_probs=182.2
Q ss_pred HHHHhCChHHHHHHHHHHhccCCCch-HHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHH
Q 012265 40 VQQLLGNTQEAFGAYTDIIKRNLADE-SSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQRE 118 (467)
Q Consensus 40 v~~~~G~~~eA~~~y~~~l~~~p~d~-~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~ 118 (467)
-++-.|++.+|+..++.+....|.+. ........-++..+ ++..++..+... .++ ..
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g---~~~~al~~~~~~------------------~~~-~~ 65 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQR---KYGVVLDEIKPS------------------SAP-EL 65 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTT---CHHHHHHHSCTT------------------SCH-HH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCC---CHHHHHHHhccc------------------CCh-hH
Confidence 36789999999999999888877653 34333334444444 345555444321 111 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccc--CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDM--FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 196 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~--~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql 196 (467)
......+.++...++.++|++.++.++.. +|++..+++..|.++...|++++|+..|++ |++... ++.++++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~-~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLEC-MAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHH-HHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHH-HHHHHHH
Confidence 34455677788888999999999998765 699999999999999999999999999987 788765 5899999
Q ss_pred HHHcCChHHHHHHHhccccCCCChh-HH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 197 AAAANHPFIAAESLAKIPDIQHMPA-TV--ATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~~p~-~~--~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
|..+|++++|+..|++++...+... +. ..++.++...|++++|+.+|++++..+ |++ ..++..+|.+++.
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~----p~~---~~~~~~la~~~~~ 212 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----SPT---LLLLNGQAACHMA 212 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----CCC---HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----CCc---HHHHHHHHHHHHH
Confidence 9999999999999999987654322 11 223355556699999999999999753 222 3457778999999
Q ss_pred CCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccC-Ch-hHHHHHHhc
Q 012265 274 HGREEDASHLFEELVKTHGS-IEALVGLVTTSAHV-DV-DKAESYEKR 318 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~-d~-~kA~~l~~~ 318 (467)
.|++++|...|++++..+|+ .+++.+++.++... +. +.+..+.++
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999985 68888888776433 33 345566543
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=1.7e-15 Score=143.14 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=159.7
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV 84 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~ 84 (467)
+..|...+++.+......+ .+...+++.+|.++..+|++++|+..|++++..+|.+..
T Consensus 21 ~~~A~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------ 78 (275)
T 1xnf_A 21 QEVILARMEQILASRALTD----DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------------------ 78 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------------------
T ss_pred HHHHHHHHHHHHhcccccC----chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH------------------
Confidence 4566666666665422211 223456667777777777777777777777766554322
Q ss_pred hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh
Q 012265 85 NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR 164 (467)
Q Consensus 85 ~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~ 164 (467)
++++.+.+++..|++++|...+++++..+|++..++...|.++..
T Consensus 79 -----------------------------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 79 -----------------------------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 344567777888888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 012265 165 ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLD 244 (467)
Q Consensus 165 ~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~ 244 (467)
.|++++|+..+++++...|++... ..+..++...|++++|+..|.+++...+.......++.++...++.++|+..+.
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDDPNDPFR--SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888988888888888888643 333445567788888888888776543322223346777778888888888888
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 245 SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 245 ~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
+++...+... +.....+..+|.++...|++++|...|++++..+|+.
T Consensus 202 ~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 202 ADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHCCSHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHhccccccc---ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 7765432211 1223456667888888999999999999998888753
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=4.8e-16 Score=156.31 Aligned_cols=276 Identities=12% Similarity=-0.028 Sum_probs=201.8
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH----HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHH
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA----VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQL 104 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~----va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~ 104 (467)
.....++++|.++...|++++|+..|++++...|.+..... ..+..+... ++...+...+.+....
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~------- 115 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL---GDYNKAMQYHKHDLTL------- 115 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHH-------
Confidence 34556678999999999999999999999999998875332 222222222 3455555555443221
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc------CCCCchHHHHHHHHHHhcCC-----------
Q 012265 105 ARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM------FPDSVMPLLLQAAVLVRENK----------- 167 (467)
Q Consensus 105 ~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~------~P~~~~~~ll~a~l~~~~~~----------- 167 (467)
...+ -..+....++++.+.++...|++++|...+++++.. .|....++...+.++...|+
T Consensus 116 ~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 116 AKSM---NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHc---cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence 0011 112345567889999999999999999999988876 33444466788889999999
Q ss_pred ------hhHHHHHHHHHHHhCC---C--cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHHHH
Q 012265 168 ------AGKAEELLGQFAEKLP---D--KSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLVAL 229 (467)
Q Consensus 168 ------~~~A~~~l~~~l~~~P---~--~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~l 229 (467)
+++|+..+++++...+ + ....++..+|.+|...|++++|+..|++++++.. . ..++..++.+
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999999877532 1 1112458899999999999999999999986432 1 1256788999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHHHHH
Q 012265 230 KERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVGLVT 302 (467)
Q Consensus 230 y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~Lv~ 302 (467)
|..+|++++|+.+|++++...+... +.......+..+|.++...|++++|..+|++++...+ + ..++..+..
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELG-EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN 351 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999998876532 2223345677789999999999999999999998753 2 234555666
Q ss_pred Hh-ccCChhHHHHHHhc
Q 012265 303 TS-AHVDVDKAESYEKR 318 (467)
Q Consensus 303 a~-~~~d~~kA~~l~~~ 318 (467)
++ ...+.+.|..+..+
T Consensus 352 ~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 352 AHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHH
Confidence 65 45678888777654
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.70 E-value=8.7e-16 Score=153.28 Aligned_cols=275 Identities=10% Similarity=-0.062 Sum_probs=200.4
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH----HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA----VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA 105 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~----va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 105 (467)
.+..++.+|.++...|++++|+..|++++...|.+..... ..+..+.. .++...+...+.+.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLA------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHH-------
Confidence 3456788999999999999999999999999998865432 22222222 234555555554432211
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc------hHHHHHHHHHHhcCC------------
Q 012265 106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENK------------ 167 (467)
Q Consensus 106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~------~~~ll~a~l~~~~~~------------ 167 (467)
... -..+....++++.+.++...|++++|...+++++...|... .++...+.++...|+
T Consensus 78 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 78 RTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred Hhc---cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 111 11234456788999999999999999999999887766432 256677888899999
Q ss_pred --------hhHHHHHHHHHHHhC---CCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHH
Q 012265 168 --------AGKAEELLGQFAEKL---PDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLV 227 (467)
Q Consensus 168 --------~~~A~~~l~~~l~~~---P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~ 227 (467)
+++|+..+.+++... ++. ...++..+|.+|...|++++|+..|++++++.. . ..++..++
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999887752 111 112457899999999999999999999985421 1 12567889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHHH
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVGL 300 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~L 300 (467)
.+|...|++++|+..|++++...+... +.......+..+|.++...|++++|...|++++...+ + ..++..+
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999999999999998876532 2233345677789999999999999999999998753 2 2345555
Q ss_pred HHHh-ccCChhHHHHHHhc
Q 012265 301 VTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 301 v~a~-~~~d~~kA~~l~~~ 318 (467)
..++ ...+.+.|..+..+
T Consensus 314 a~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 5555 45678888776543
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=3.4e-15 Score=139.62 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
.+.....++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV-LNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH-HHH
Confidence 3334456788999999999999999999999999999999999999999999999999999999999999998765 489
Q ss_pred HHHHHHHcCChHHHHHHHhcccc--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 193 RAQVAAAANHPFIAAESLAKIPD--IQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~--~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
++.+|...|++++|+..|++++. ..+ .+.++..++.+|...|++++|+.+|++++... +.+ ..++..+|.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~~la~ 183 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN----RNQ---PSVALEMAD 183 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCC---HHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----ccc---HHHHHHHHH
Confidence 99999999999999999999987 433 45667889999999999999999999998752 211 234666899
Q ss_pred HHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 270 FKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
++...|++++|..+|++++...|+ ..++..+..++ ...+.+.|..+.+.
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999998875 55666666655 46678888777654
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=4.8e-16 Score=156.33 Aligned_cols=272 Identities=12% Similarity=-0.053 Sum_probs=196.5
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccC------CCchHHHHHHHhhhhh
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRN------LADESSFAVAVNNLVA 77 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~------p~d~~~~~va~nnl~~ 77 (467)
.+..|...+++.+..+. ++ ...++.++..+|.+|..+|++++|+..|++++... +....++...+..+..
T Consensus 63 ~~~~A~~~~~~al~~~~---~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAGT---ED-LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp CHHHHHHHHHHHHHHCC---SC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcc---cC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 35678888888887532 22 12245678999999999999999999999998872 2222333323222222
Q ss_pred ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 012265 78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK-----------------MDQAREL 140 (467)
Q Consensus 78 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~-----------------~~~A~~~ 140 (467)
. ++...++..+.+..... ... -..+....++++.+.++...|+ +++|...
T Consensus 139 ~---g~~~~A~~~~~~al~~~-------~~~---~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 139 M---GRFDEAAICCERHLTLA-------RQL---GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp T---TCHHHHHHHHHHHHHHH-------HHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHH-------HHh---hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 2 34555555555432221 011 0123445678899999999999 9999999
Q ss_pred HHhccccC------CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHHcCChHHHHHH
Q 012265 141 VAALPDMF------PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-----IILLARAQVAAAANHPFIAAES 209 (467)
Q Consensus 141 ~~~l~~~~------P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-----~~~l~Laql~~~~g~~~~A~~~ 209 (467)
+++++... |....++...|.++...|++++|+..+++++...|.... .++..+|.+|...|++++|+..
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 98876543 222335667888999999999999999999987654211 1457899999999999999999
Q ss_pred HhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHH
Q 012265 210 LAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASH 282 (467)
Q Consensus 210 L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~ 282 (467)
|++++++.. ...++..++.+|..+|++++|+.+|++++...+... .......++..+|.++...|++++|..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999975422 134567899999999999999999999998876532 223334466778999999999999999
Q ss_pred HHHHHHHhcCC
Q 012265 283 LFEELVKTHGS 293 (467)
Q Consensus 283 ~le~ll~~~pd 293 (467)
+|++++...+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 38
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=1.9e-15 Score=145.85 Aligned_cols=272 Identities=11% Similarity=-0.057 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH----HHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA----VAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~----va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
.++..|.++...|++++|+..|++++...|.+..... ..+..+.. .++...+...+.+..... ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~-------~~~ 76 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLA-------RTI 76 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHh-------hcc
Confidence 4577899999999999999999999999998865432 22222222 235555655554432211 011
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch------HHHHHHHHHHhcCC---------------
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM------PLLLQAAVLVRENK--------------- 167 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~------~~ll~a~l~~~~~~--------------- 167 (467)
-..+....++++.+.++...|++++|...+++++...|.... ++...+.++...|+
T Consensus 77 ---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 77 ---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred ---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 012234557889999999999999999999998776554322 56677888889999
Q ss_pred -----hhHHHHHHHHHHHhC---CCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHHHHHH
Q 012265 168 -----AGKAEELLGQFAEKL---PDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATLVALK 230 (467)
Q Consensus 168 -----~~~A~~~l~~~l~~~---P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~ly 230 (467)
+++|+..+++++... ++. ...++..++.+|...|++++|+..|++++++.. . ..++..++.+|
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999887652 111 112457889999999999999999999985421 1 12567889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHHHHHH
Q 012265 231 ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVGLVTT 303 (467)
Q Consensus 231 ~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~Lv~a 303 (467)
...|++++|+..+++++...+... +.......+..+|.++...|++++|...|++++...+ + ..++..+..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 312 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999999998875532 2223345667789999999999999999999998753 2 2344555555
Q ss_pred h-ccCChhHHHHHHhc
Q 012265 304 S-AHVDVDKAESYEKR 318 (467)
Q Consensus 304 ~-~~~d~~kA~~l~~~ 318 (467)
+ ...+.+.|..+...
T Consensus 313 ~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHH
Confidence 5 45678888777643
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=1.6e-15 Score=152.87 Aligned_cols=196 Identities=12% Similarity=0.016 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC-hhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENK-AGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~-~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
....++++.+.++...|++++|+..+++++..+|++..++...+.++...|+ +++|+..|++++..+|++... ++.++
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a-~~~~g 173 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV-WHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-HHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH-HHHHH
Confidence 4556788999999999999999999999999999999999999999999997 999999999999999999876 48999
Q ss_pred HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
.+|...|++++|+..|++++++++ ++.++..++.+|..+|++++|+..|++++... +....+|..+|.++..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 999999999999999999998876 77889999999999999999999999999862 2233567778999999
Q ss_pred -CCChhHH-----HHHHHHHHHhcCC-HHHHHHHHHHhccCC---hhHHHHHHhcC
Q 012265 274 -HGREEDA-----SHLFEELVKTHGS-IEALVGLVTTSAHVD---VDKAESYEKRL 319 (467)
Q Consensus 274 -~g~~~~A-----~~~le~ll~~~pd-~~ala~Lv~a~~~~d---~~kA~~l~~~L 319 (467)
.|.+++| +..|++++..+|+ ..++..+...+.... .+.|..++..+
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 5665888 5999999999986 567777777665543 57777776665
No 40
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=5.9e-16 Score=168.02 Aligned_cols=170 Identities=14% Similarity=0.085 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
....+++|.+.++...|++++|+..++++++.+|++..++..+|.+|...|++++|+..|+++++.+|++... ++.||.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a-~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA-YSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999876 499999
Q ss_pred HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC
Q 012265 196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH 274 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~ 274 (467)
+|..+|++++|+..|++++++++ ++..+..++.+|..+|++++|+..|+++++.. +....++..+|.++...
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhHHHhc
Confidence 99999999999999999998876 67888999999999999999999999999862 22334677799999999
Q ss_pred CChhHHHHHHHHHHHhcCC
Q 012265 275 GREEDASHLFEELVKTHGS 293 (467)
Q Consensus 275 g~~~~A~~~le~ll~~~pd 293 (467)
|++++|.+.|+++++..|+
T Consensus 159 g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhChh
Confidence 9999999999999987654
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=8.3e-15 Score=133.67 Aligned_cols=193 Identities=17% Similarity=0.097 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
..++++.+.+++..|++++|...++.++..+|++..++...+.++...|++++|+..+++++...|++... ++.+|.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI-NNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH-HHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999998775 48999999
Q ss_pred HHc-CChHHHHHHHhcccc--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 198 AAA-NHPFIAAESLAKIPD--IQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 198 ~~~-g~~~~A~~~L~~~~~--~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
... |++++|+..|+++++ ..+ .+.++..++.+|...|++++|+..|++++... +.+ ...+..+|.++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~~~~ 159 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ----PQF---PPAFKELARTKML 159 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTC---HHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---chHHHHHHHHHHH
Confidence 999 999999999999987 222 34667889999999999999999999998753 111 2356668999999
Q ss_pred CCChhHHHHHHHHHHHhcC-C-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 274 HGREEDASHLFEELVKTHG-S-IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~p-d-~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
.|++++|..+|++++...| + ..++..+...+ ...+.+.+..+.+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999988 5 44454444444 45567777777654
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.9e-15 Score=150.70 Aligned_cols=269 Identities=10% Similarity=-0.068 Sum_probs=193.0
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC--CchH----HHHHHHhhhhhc
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--ADES----SFAVAVNNLVAL 78 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--~d~~----~~~va~nnl~~l 78 (467)
...|...+++.+.... ++ ...+..++..+|.++..+|++++|...|++++.... .+.. ++...+..+..
T Consensus 25 ~~~A~~~~~~al~~~~---~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 99 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGT---ED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV- 99 (406)
T ss_dssp HHHHHHHHHHHHHHCC---SC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCc---cc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-
Confidence 5678888888887532 22 123457789999999999999999999999877631 2222 22222222222
Q ss_pred cCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC--------------------HHHHH
Q 012265 79 KGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK--------------------MDQAR 138 (467)
Q Consensus 79 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~--------------------~~~A~ 138 (467)
.++...++..+.+.....+. . -.......++++.+.++...|+ +++|.
T Consensus 100 --~g~~~~A~~~~~~al~~~~~-------~---~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 100 --LGNFDEAIVCCQRHLDISRE-------L---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp --TTCHHHHHHHHHHHHHHHHH-------H---TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHh-------c---ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 23555666555544322111 1 0112334578899999999999 99999
Q ss_pred HHHHhccccC------CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHHcCChHHHH
Q 012265 139 ELVAALPDMF------PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-----IILLARAQVAAAANHPFIAA 207 (467)
Q Consensus 139 ~~~~~l~~~~------P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-----~~~l~Laql~~~~g~~~~A~ 207 (467)
..+++++... |....++...|.++...|++++|+..+++++...|.... .++..+|.+|...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9998776542 222335667788899999999999999999876543211 24588999999999999999
Q ss_pred HHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHH
Q 012265 208 ESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDA 280 (467)
Q Consensus 208 ~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A 280 (467)
..|++++++.. ...++..++.+|...|++++|+..|++++...+... +......++..+|.++...|++++|
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-DRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999975321 134567889999999999999999999998875532 2233345677789999999999999
Q ss_pred HHHHHHHHHhc
Q 012265 281 SHLFEELVKTH 291 (467)
Q Consensus 281 ~~~le~ll~~~ 291 (467)
..+|+++++..
T Consensus 327 ~~~~~~al~~~ 337 (406)
T 3sf4_A 327 MHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=1.6e-15 Score=146.41 Aligned_cols=271 Identities=11% Similarity=-0.049 Sum_probs=191.5
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC--Cch----HHHHHHHhhhhh
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--ADE----SSFAVAVNNLVA 77 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--~d~----~~~~va~nnl~~ 77 (467)
....|...+++.+..+. ++. .....++..+|.++..+|++++|+..|++++.... .+. .++...+..+..
T Consensus 20 ~~~~A~~~~~~al~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGT---EDL-KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp CHHHHHHHHHHHHHHCC---SCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCc---ccH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 35778888888887532 221 12456788999999999999999999999987622 122 222222222222
Q ss_pred ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC--------------------HHHH
Q 012265 78 LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK--------------------MDQA 137 (467)
Q Consensus 78 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~--------------------~~~A 137 (467)
. ++...+...+.+.....+. . -.......++++.+.++...|+ +++|
T Consensus 96 ~---g~~~~A~~~~~~al~~~~~-------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 96 L---GNFDEAIVCCQRHLDISRE-------L---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp T---TCHHHHHHHHHHHHHHHHH-------T---TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred c---cCHHHHHHHHHHHHHHHHH-------h---cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 2 3455555555543222110 0 1122334578899999999999 9999
Q ss_pred HHHHHhccccC------CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHcCChHHH
Q 012265 138 RELVAALPDMF------PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS-----KIILLARAQVAAAANHPFIA 206 (467)
Q Consensus 138 ~~~~~~l~~~~------P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~-----~~~~l~Laql~~~~g~~~~A 206 (467)
...+++++... |....++...+.++...|++++|+..+++++...+... ..++..+|.+|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99988776542 22233566778889999999999999999987654321 12458899999999999999
Q ss_pred HHHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265 207 AESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279 (467)
Q Consensus 207 ~~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~ 279 (467)
+..|++++++.. ...++..++.+|..+|++++|+..+++++...+... +......++..+|.++...|++++
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHH
Confidence 999999975321 134567889999999999999999999998875532 223334456678999999999999
Q ss_pred HHHHHHHHHHhcC
Q 012265 280 ASHLFEELVKTHG 292 (467)
Q Consensus 280 A~~~le~ll~~~p 292 (467)
|..+|++++...+
T Consensus 322 A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 322 AMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=2.9e-15 Score=138.75 Aligned_cols=192 Identities=12% Similarity=0.017 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+..++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA-YYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH-HHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999998765 489999999
Q ss_pred HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265 199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 277 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~ 277 (467)
..|++++|+..|+++++..+ .+.++..++.+|...|++++|+.++++++... +.+ ..++..+|.++...|++
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN----END---TEARFQFGMCLANEGML 175 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHHTCC
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----Ccc---HHHHHHHHHHHHHcCCH
Confidence 99999999999999987654 67788889999999999999999999998753 111 23466689999999999
Q ss_pred hHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 278 EDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 278 ~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
++|...|++++..+|+ ..++..+..++ ...+.+.|..+.++
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999875 56677777776 45567888777654
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.66 E-value=4.2e-15 Score=137.51 Aligned_cols=168 Identities=11% Similarity=-0.001 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCC-CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFP-DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P-~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
..+++.+.+++..|++++|+..+++++..+| .+..+++..|.++...|++++|+..+++++..+|++... ++.+|.+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA-YIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH-HHHHHHHH
Confidence 4678999999999999999999999999998 787888889999999999999999999999999998775 48999999
Q ss_pred HHcCChHHHHHHHhccccCCC-Ch-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch--HHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MP-------ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK--LSVIMQEA 267 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p-------~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~--~~~ll~~l 267 (467)
..+|++++|+..|++++.+.+ ++ .++..++.++..+|++++|+..|++++.. ++. ....+..+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~l 159 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TSKKWKTDALYSL 159 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CCCcccHHHHHHH
Confidence 999999999999999998665 45 45778899999999999999999999864 233 44567778
Q ss_pred HHHHHHCCCh---------------------------hHHHHHHHHHHHhcCCH
Q 012265 268 ASFKLRHGRE---------------------------EDASHLFEELVKTHGSI 294 (467)
Q Consensus 268 a~~~l~~g~~---------------------------~~A~~~le~ll~~~pd~ 294 (467)
|.++...|+. ++|+..|+++++.+|+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999888888 89999999999999863
No 46
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=7.4e-15 Score=150.53 Aligned_cols=244 Identities=14% Similarity=0.078 Sum_probs=171.3
Q ss_pred hhhHHHHHHHHHHH--hCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265 30 LAPIAVQLAYVQQL--LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV 107 (467)
Q Consensus 30 l~~i~~qlA~v~~~--~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 107 (467)
...+...+|.++.. ++++++|+..|++++..+|+++.+....+.-+..+....+...++..+.+.....|+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~------- 207 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD------- 207 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-------
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-------
Confidence 33455666665554 457999999999999999999887653333222232223333333333332222111
Q ss_pred hhcCCCHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265 108 LDLRLSPKQREAIYANRVLL----LLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP 183 (467)
Q Consensus 108 l~~kL~~~q~~~l~~n~all----~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P 183 (467)
...++.+.+.. +...+++++|.+.+++++..+|++..++...|.++...|++++|+..++++++.+|
T Consensus 208 ---------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 208 ---------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp ---------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ---------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 11234444443 34457789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHc-------------------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265 184 DKSKIILLARAQVAAAA-------------------NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVL 243 (467)
Q Consensus 184 ~~~~~~~l~Laql~~~~-------------------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l 243 (467)
++... +..+|.+|..+ +.+++|+..|++++++.+ .+..+..++.+|...|++++|+..|
T Consensus 279 ~~~~~-~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 279 NNAYL-HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp TCHHH-HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 99875 47888887543 346788888988887654 4556778999999999999999999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHH-HHCCChhHHHHHHHHHHHhcCCH
Q 012265 244 DSAIKWWLNAMTEDNKLSVIMQEAASFK-LRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 244 ~~al~~~~~~~~~~~~~~~ll~~la~~~-l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
++++... +++.....++..+|.++ ...|++++|+..|+++++.+|+.
T Consensus 358 ~kaL~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 358 QKEFSKE----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHHHHSC----CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHhcC----CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 9998642 12222223444456554 56899999999999999998763
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.65 E-value=7.2e-15 Score=139.12 Aligned_cols=172 Identities=15% Similarity=0.033 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH--HHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS--KIILLAR 193 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~--~~~~l~L 193 (467)
...++.+..++..|++++|+..|++++..+|++ ..+++..|.++...|++++|+..|++++..+|++. ..+++.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 467899999999999999999999999999999 77888999999999999999999999999998642 2345899
Q ss_pred HHHHHH--------cCChHHHHHHHhccccCCC-ChhHH-----------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 194 AQVAAA--------ANHPFIAAESLAKIPDIQH-MPATV-----------------ATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 194 aql~~~--------~g~~~~A~~~L~~~~~~~~-~p~~~-----------------~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
|.+|.. +|++++|+..|+++++..+ ++... ..++.+|...|++++|+..|++++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999 9999999999999987544 33333 678999999999999999999999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHC----------CChhHHHHHHHHHHHhcCCH
Q 012265 248 KWWLNAMTEDNKLSVIMQEAASFKLRH----------GREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~ll~~la~~~l~~----------g~~~~A~~~le~ll~~~pd~ 294 (467)
..++ +++....++..+|.++... |++++|+..|+++++.+|+.
T Consensus 176 ~~~p----~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 176 DAYP----DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHCT----TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHCC----CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 8643 2333445667789999876 89999999999999999873
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.7e-14 Score=134.56 Aligned_cols=192 Identities=13% Similarity=-0.035 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-------HHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-------SKIIL 190 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-------~~~~~ 190 (467)
...+++.+.+++..|++++|...+++++..+ ++..++...|.++...|++++|+..+.+++...|++ .. ++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK-SF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH-HH
Confidence 3567889999999999999999999999888 888888899999999999999999999999988765 34 45
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc--------------------------CCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD--------------------------IQH-MPATVATLVALKERAGDIDGAAAVL 243 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~--------------------------~~~-~p~~~~~l~~ly~~~g~~~~A~~~l 243 (467)
+.+|.+|...|++++|+..|++++. ..+ .+.++..++.+|...|++++|+..|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999999999999999999986 332 4456778999999999999999999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 244 DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 244 ~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
++++... +. ...++..+|.++...|++++|...|++++..+|+ ..++..+..++ ...+.+.|..+...
T Consensus 163 ~~a~~~~----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 163 TEMIKRA----PE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHC----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcC----cc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999753 11 1245667899999999999999999999999976 67777777776 45567888776543
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=4e-14 Score=145.05 Aligned_cols=266 Identities=15% Similarity=0.018 Sum_probs=180.9
Q ss_pred HhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCC--------CchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhh
Q 012265 27 EIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--------ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKD 98 (467)
Q Consensus 27 ~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--------~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~ 98 (467)
+...+..+..+|.+|..+|++++|+..|++++...+ ....++...+..++.++ ..++..|...+.+.....
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG-GNQNERAKVCFEKALEKK 168 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhC
Confidence 344667788999999999999999999999987632 22233322222222222 234556666665544433
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHhccccCCCCchHHHHHHHHH----HhcCChhHH
Q 012265 99 MQNFQLARVLDLRLSPKQREAIYANRVLLLL---HANKMDQARELVAALPDMFPDSVMPLLLQAAVL----VRENKAGKA 171 (467)
Q Consensus 99 ~~~~~~~~~l~~kL~~~q~~~l~~n~all~l---~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~----~~~~~~~~A 171 (467)
|++ ..++.+.+.++. ..++.++|++.+++++..+|++..+....+..+ ...+++++|
T Consensus 169 p~~----------------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a 232 (472)
T 4g1t_A 169 PKN----------------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232 (472)
T ss_dssp TTC----------------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHH
T ss_pred CCC----------------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHH
Confidence 321 234455555544 356788899999999999999988776665544 346788999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc-----------------
Q 012265 172 EELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA----------------- 233 (467)
Q Consensus 172 ~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~----------------- 233 (467)
++.+++++..+|++.... ..+|.+|...|++++|+..|+++++..+ ++.++..++.+|..+
T Consensus 233 ~~~~~~al~~~~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 233 EKLVEEALEKAPGVTDVL-RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHCSSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHHhCccHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998764 8999999999999999999999998765 566677788777543
Q ss_pred --CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHH----HHHH--HHHhc
Q 012265 234 --GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA----LVGL--VTTSA 305 (467)
Q Consensus 234 --g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~a----la~L--v~a~~ 305 (467)
+.++.|+..+++++... +.. ...+..+|.++...|++++|+.+|++++..+++... ...+ +..+.
T Consensus 312 ~~~~~~~A~~~~~~a~~~~----~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEAN----DNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHhhcC----Cch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 22455556666655432 111 123555899999999999999999999998865321 1111 22345
Q ss_pred cCChhHHHHHHh
Q 012265 306 HVDVDKAESYEK 317 (467)
Q Consensus 306 ~~d~~kA~~l~~ 317 (467)
..+.++|..+..
T Consensus 385 ~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 385 MKCEDKAIHHFI 396 (472)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 667788866543
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=1.7e-14 Score=127.15 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
.++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ++.+|.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-ATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Confidence 4677899999999999999999999999999999888899999999999999999999999999998775 488999999
Q ss_pred HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265 199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 277 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~ 277 (467)
..|++++|+..|++++...+ ++.++..++.+|...|++++|+..+++++... +.+ ...+..+|.++...|++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR----PNE---GKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----ccc---hHHHHHHHHHHHHcCCH
Confidence 99999999999999987654 67778889999999999999999999998752 211 23566689999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 012265 278 EDASHLFEELVKTHGS 293 (467)
Q Consensus 278 ~~A~~~le~ll~~~pd 293 (467)
++|...|++++..+|+
T Consensus 161 ~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 161 EEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999998765
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=4.8e-14 Score=134.06 Aligned_cols=228 Identities=11% Similarity=-0.026 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
..+++.+|.++...|++++|+..|++++. +.+..+....+.-+.. .....+...++..+.+....
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------------ 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------------
Confidence 35678899999999999999999999998 5666655544333222 01134566677666553221
Q ss_pred cCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHh
Q 012265 110 LRLSPKQREAIYANRVLLLLH----ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEK 181 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~----~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~ 181 (467)
....++++.+.++.. .+++++|...++++... ++..++...+.++.. .+++++|+..|+++++.
T Consensus 72 ------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 72 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred ------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 123578899999999 99999999999998876 477788889999998 99999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHH----cCChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 012265 182 LPDKSKIILLARAQVAAA----ANHPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNA 253 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~----~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~ 253 (467)
. +... .+.++.+|.. .+++++|+..|+++++.. .+..+..++.+|.. .+++++|+.+|++++..
T Consensus 144 ~--~~~a-~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---- 215 (273)
T 1ouv_A 144 N--DGDG-CTILGSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---- 215 (273)
T ss_dssp T--CHHH-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----
T ss_pred C--cHHH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----
Confidence 6 3333 4889999999 999999999999998764 46677789999999 99999999999999863
Q ss_pred ccCCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhcCC
Q 012265 254 MTEDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 254 ~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~pd 293 (467)
+ + ...+..+|.++.. .+++++|..+|+++++..|+
T Consensus 216 --~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 216 --E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp --T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred --C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 1 1 2345668999999 99999999999999998765
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.63 E-value=7.9e-15 Score=159.16 Aligned_cols=169 Identities=13% Similarity=0.036 Sum_probs=149.8
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
-+.++..||.+|..+|++++|+..|+++++.+|++..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~------------------------------------------- 44 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------------------------------------------- 44 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-------------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------------------------------------
Confidence 4567889999999999999999999999998886422
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~ 189 (467)
+++|++.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++...
T Consensus 45 ----------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a- 113 (723)
T 4gyw_A 45 ----------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA- 113 (723)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-
T ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Confidence 345668888889999999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
++.||.+|..+|++++|+..|++++++++ ++.++..++.+|..+|++++|+..++++++..++
T Consensus 114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 48999999999999999999999998776 6778889999999999999999999999887644
No 53
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.63 E-value=2.6e-15 Score=137.80 Aligned_cols=170 Identities=15% Similarity=0.047 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHH----------------HHHHHHhcCChhHHHHHHHHHHHhC
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLL----------------QAAVLVRENKAGKAEELLGQFAEKL 182 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll----------------~a~l~~~~~~~~~A~~~l~~~l~~~ 182 (467)
...+..+..++..|++++|+..+++++..+|++..+++. .|.++...|++++|+..|+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 356788999999999999999999999999999999888 9999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhccCCch
Q 012265 183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI--DGAAAVLDSAIKWWLNAMTEDNK 259 (467)
Q Consensus 183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~--~~A~~~l~~al~~~~~~~~~~~~ 259 (467)
|++...+ +.+|.+|...|++++|+..|++++++++ ++..+..++.+|..+|+. +.+...+.+++. + ++
T Consensus 85 p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~------~-~~- 155 (208)
T 3urz_A 85 PNNVDCL-EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS------P-TK- 155 (208)
T ss_dssp TTCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C------C-CH-
T ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC------C-Cc-
Confidence 9998764 9999999999999999999999998876 678888999988766543 344445544431 1 11
Q ss_pred HHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHH
Q 012265 260 LSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEAL 297 (467)
Q Consensus 260 ~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~al 297 (467)
....+...|..+...|++++|+..|+++++.+|+..+.
T Consensus 156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 12234456888888999999999999999999986443
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=3.8e-14 Score=133.82 Aligned_cols=218 Identities=11% Similarity=-0.001 Sum_probs=170.2
Q ss_pred hHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH----HHHHHhhhhhcc
Q 012265 4 MYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS----FAVAVNNLVALK 79 (467)
Q Consensus 4 ~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~----~~va~nnl~~l~ 79 (467)
.+..|...+++.+..+.- ...++..+|.++..+|++++|+..|++++. .|.+... +...+..+...
T Consensus 18 ~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~- 87 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYN--------SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKK- 87 (272)
T ss_dssp CHHHHHHHHHHHHHTTCC--------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHc-
Confidence 467888999888875421 224678899999999999999999999999 4555444 22233333222
Q ss_pred CCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHH
Q 012265 80 GPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQA 159 (467)
Q Consensus 80 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a 159 (467)
++...+...+.+.....++ ...++++.+.+++..|++++|+..+++++..+|.+..++...+
T Consensus 88 --~~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 88 --GQDSLAIQQYQAAVDRDTT----------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp --TCHHHHHHHHHHHHHHSTT----------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHhcCcc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 4556666666554332221 1246889999999999999999999999999999999988888
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC---hHHHHHHHhccccCC---CCh------hHHHHHH
Q 012265 160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH---PFIAAESLAKIPDIQ---HMP------ATVATLV 227 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~---~~~A~~~L~~~~~~~---~~p------~~~~~l~ 227 (467)
..+...+++++|+..++++++.+|++... ++.++.++...|+ +++|+..|++++++. +.+ .++..++
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELKPNIYIG-YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHH-HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 44555669999999999999999999765 4889999999999 999999999998643 221 3567799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
.+|...|++++|+..|++++...
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999863
No 55
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=2.6e-14 Score=132.63 Aligned_cols=171 Identities=10% Similarity=0.050 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH--HHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK--IILLAR 193 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~--~~~l~L 193 (467)
..+++.+..++..|++++|+..+++++..+|++. .+++..|.++...|++++|+..|+++++.+|++.. .+++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 4578999999999999999999999999999875 46788899999999999999999999999999754 245788
Q ss_pred HHHHHH------------------cCChHHHHHHHhccccCCC-ChhHH-----------------HHHHHHHHHcCCHH
Q 012265 194 AQVAAA------------------ANHPFIAAESLAKIPDIQH-MPATV-----------------ATLVALKERAGDID 237 (467)
Q Consensus 194 aql~~~------------------~g~~~~A~~~L~~~~~~~~-~p~~~-----------------~~l~~ly~~~g~~~ 237 (467)
|.+|.. +|++++|+..|+++++..+ ++.+. ..++.+|...|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 888876 6799999999999997654 33222 35677888899999
Q ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 238 GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 238 ~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+|+..|++++..++ +++....++..+|.++...|++++|+..|+.+....|+
T Consensus 165 ~A~~~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 165 AVVNRVEGMLRDYP----DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHST----TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHCc----CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 99999999887642 23333455666889999999999999999888876664
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=6.5e-15 Score=152.67 Aligned_cols=216 Identities=7% Similarity=-0.039 Sum_probs=174.0
Q ss_pred hCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCCh-hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHH
Q 012265 44 LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDV-NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYA 122 (467)
Q Consensus 44 ~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~ 122 (467)
..++++|+..++.+....|.+..+++..+..+... +++ .++...+.+.....|+ ...+++
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~~A~~~~~~al~~~p~----------------~~~a~~ 141 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT---PDYSPEAEVLLSKAVKLEPE----------------LVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS---SSCCHHHHHHHHHHHHHCTT----------------CHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc---cccHHHHHHHHHHHHhhCCC----------------CHHHHH
Confidence 34477888889988888888888777665555433 345 5566655554333221 234788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhc---------CChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRE---------NKAGKAEELLGQFAEKLPDKSKIILLAR 193 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~---------~~~~~A~~~l~~~l~~~P~~~~~~~l~L 193 (467)
+.+.+++..|++++|...+++++..+|+ ..++...|.++... |++++|+..|+++++.+|++...+ +.+
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l 219 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW-YIL 219 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH-HHH
Confidence 9999999999999999999999999999 57778888889888 999999999999999999998754 899
Q ss_pred HHHHHHc--------CChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265 194 AQVAAAA--------NHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 261 (467)
Q Consensus 194 aql~~~~--------g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 261 (467)
|.+|... |++++|+..|++++.+++ ++.++..++.+|..+|++++|+..|++++... +...
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~ 292 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-------PAWP 292 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCH
Confidence 9999999 999999999999987654 67788899999999999999999999999763 2223
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHH
Q 012265 262 VIMQEAASFKLRHGREEDASHLFEEL 287 (467)
Q Consensus 262 ~ll~~la~~~l~~g~~~~A~~~le~l 287 (467)
..+..++.++...|++++|+..+.++
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667899999999999998877655
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.6e-13 Score=133.55 Aligned_cols=227 Identities=9% Similarity=0.044 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHhhhhhc----cCCCCh-------hHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265 48 QEAFGAYTDIIKRNLADESSFAVAVNNLVAL----KGPKDV-------NDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 116 (467)
Q Consensus 48 ~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l----~~~~~~-------~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q 116 (467)
++|..+|++++..+|.++.+++-.+.-+... ...++. .++...+.+.... +. +.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--------------~~-p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------LL-KK 97 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--------------TT-TT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--------------hC-cc
Confidence 7899999999999999998886443322211 011222 4444444443321 00 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
...++++.+.++...|++++|+..++++++.+|++.. ++...+.++.+.|++++|+.+|+++++..|.+... ++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~a~ 176 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-YVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH-HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH-HHHHHH
Confidence 3357889999999999999999999999999999886 78888888889999999999999999998887543 344454
Q ss_pred HHHH-cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 196 VAAA-ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 196 l~~~-~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
+... .|++++|+.+|++++...+ ++.++..++.++...|++++|+.+|++++... ..+ +.....+|...+.++..
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~-p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLP-PEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSC-GGGCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHHHHHHH
Confidence 4333 7999999999999987654 67888889999999999999999999998620 001 11234567777899999
Q ss_pred CCChhHHHHHHHHHHHhcCC
Q 012265 274 HGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~pd 293 (467)
.|++++|..+++++++.+|+
T Consensus 254 ~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHccc
Confidence 99999999999999999986
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=8.5e-15 Score=151.78 Aligned_cols=182 Identities=10% Similarity=-0.067 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKM-DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~-~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
...++++.+.+++..|++ ++|+..++++++.+|++..++...|.++...|++++|+..|+++++.+|+ .. ++..+|.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~-~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV-SLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH-HHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH-HHHHHHH
Confidence 346788999999999999 99999999999999999999999999999999999999999999999999 44 4589999
Q ss_pred HHHHc---------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhccCC
Q 012265 196 VAAAA---------NHPFIAAESLAKIPDIQH-MPATVATLVALKERA--------GDIDGAAAVLDSAIKWWLNAMTED 257 (467)
Q Consensus 196 l~~~~---------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~--------g~~~~A~~~l~~al~~~~~~~~~~ 257 (467)
+|... |++++|+..|++++++.+ ++.++..++.+|... |++++|+..|++++...+. .
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~ 254 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK----A 254 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG----G
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC----c
Confidence 99999 999999999999998765 677889999999999 9999999999999986321 0
Q ss_pred chHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 012265 258 NKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTS 304 (467)
Q Consensus 258 ~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~ 304 (467)
.....++..+|.++...|++++|...|+++++.+|+ ..++..+..++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 133446777899999999999999999999999986 45555555544
No 59
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.60 E-value=1.9e-14 Score=136.16 Aligned_cols=198 Identities=10% Similarity=0.021 Sum_probs=152.9
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
-..+++.+|.++..+|++++|+..|++++...|.+...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------------------------------------ 51 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA------------------------------------------ 51 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH------------------------------------------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch------------------------------------------
Confidence 44678999999999999999999999999998864210
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHh--------cCChhHHHHHHHHH
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVR--------ENKAGKAEELLGQF 178 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~--------~~~~~~A~~~l~~~ 178 (467)
..++++.+.+++..|++++|+..+++++..+|++. .+++..|.++.. .|++++|+..|+++
T Consensus 52 --------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 52 --------ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 02456778888888999999999999988888653 356677888888 88999999999999
Q ss_pred HHhCCCcHHH--HH--------------HHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHc-----
Q 012265 179 AEKLPDKSKI--IL--------------LARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERA----- 233 (467)
Q Consensus 179 l~~~P~~~~~--~~--------------l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~----- 233 (467)
+..+|++... +. +.+|.+|...|++++|+..|+++++..+ .+..+..++.+|..+
T Consensus 124 l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 203 (261)
T 3qky_A 124 IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSV 203 (261)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccch
Confidence 9998886432 11 6789999999999999999999986543 345677889999877
Q ss_pred -----CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHH
Q 012265 234 -----GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDAS 281 (467)
Q Consensus 234 -----g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~ 281 (467)
|++++|+..|++++..++ +++........++.++...++++++.
T Consensus 204 ~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 204 RARQPERYRRAVELYERLLQIFP----DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCT----TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhcccchHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999998653 33444444555566666666655443
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=1.2e-13 Score=127.56 Aligned_cols=165 Identities=15% Similarity=0.053 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCC-CchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL-ADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p-~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
..++.+|.++..+|++++|+..|++++...| .+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------------------------------------ 45 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTA------------------------------------------ 45 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHH------------------------------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHH------------------------------------------
Confidence 4578899999999999999999999999987 444333
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH--
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI-- 188 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~-- 188 (467)
++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..|+++++.+|++...
T Consensus 46 -----------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 114 (228)
T 4i17_A 46 -----------YNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEK 114 (228)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred -----------HHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3344455555555555555555555555555555555555555555555555555555555554310
Q ss_pred ----HHHHHHHHHHHcCChHHHHHHHhccccCCCC---hhHHHHHHHHHHHcCCH-------------------------
Q 012265 189 ----ILLARAQVAAAANHPFIAAESLAKIPDIQHM---PATVATLVALKERAGDI------------------------- 236 (467)
Q Consensus 189 ----~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~---p~~~~~l~~ly~~~g~~------------------------- 236 (467)
+++.+|.++...|++++|+..|++++++.+. +..+..++.+|..+|+.
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (228)
T 4i17_A 115 LYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADA 194 (228)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 1244555555555555555555555544322 23344445555544444
Q ss_pred --HHHHHHHHHHHHH
Q 012265 237 --DGAAAVLDSAIKW 249 (467)
Q Consensus 237 --~~A~~~l~~al~~ 249 (467)
++|+..|++++..
T Consensus 195 ~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 195 AFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 8888888888875
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=139.69 Aligned_cols=247 Identities=12% Similarity=0.003 Sum_probs=163.5
Q ss_pred hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc--------CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhh
Q 012265 28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR--------NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM 99 (467)
Q Consensus 28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~--------~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~ 99 (467)
++...++..+|.++..+|++++|+..|++++.. .|....++...+..+... ++...+...+.+.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~- 99 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ---NKYKDAANLLNDALAIR- 99 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH-
Confidence 345577899999999999999999999999985 333333333333333323 34555555554432211
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC--------CCCchHHHHHHHHHHhcCChhHH
Q 012265 100 QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF--------PDSVMPLLLQAAVLVRENKAGKA 171 (467)
Q Consensus 100 ~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~--------P~~~~~~ll~a~l~~~~~~~~~A 171 (467)
..... -..+....++++.+.++...|++++|...+++++... |....++...|.++...|++++|
T Consensus 100 ------~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 100 ------EKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp ------HHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ------HHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 00000 0112345678899999999999999999999888664 44445667788899999999999
Q ss_pred HHHHHHHHHh--------CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC---------C-Ch------hHHHHHH
Q 012265 172 EELLGQFAEK--------LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ---------H-MP------ATVATLV 227 (467)
Q Consensus 172 ~~~l~~~l~~--------~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~---------~-~p------~~~~~l~ 227 (467)
+..+++++.. +|.... ++..+|.+|...|++++|+..|+++++.. . .. ..+..++
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPNVAK-TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 9999999987 555444 35889999999999999999999997521 1 11 1222334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
..+...+.+.+|...+..+... .+....++..+|.++...|++++|..+|+++++..|+
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD-------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CCSCCCC----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CchhhHHHHHHHHHHHhhcCCC-------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 4444555666666666665542 2344456777899999999999999999999987653
No 62
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=5.8e-14 Score=132.34 Aligned_cols=234 Identities=16% Similarity=0.077 Sum_probs=163.2
Q ss_pred chHHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC
Q 012265 3 LMYLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK 82 (467)
Q Consensus 3 ~~l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~ 82 (467)
.++..|.+++++.+..+. .+...++..+|.++..+|++++|+..|++++.... .. .+. .
T Consensus 22 ~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------~~--~~~-~ 80 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDH-------PDVATMLNILALVYRDQNKYKEAAHLLNDALAIRE-----------KT--LGK-D 80 (283)
T ss_dssp HHHHHHHHHHHHHHCSSS-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HH--TCT-T
T ss_pred HHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-----------HH--cCC-c
Confidence 456677777776664331 23567889999999999999999999998875420 00 000 0
Q ss_pred ChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc--------CCCCchH
Q 012265 83 DVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM--------FPDSVMP 154 (467)
Q Consensus 83 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~--------~P~~~~~ 154 (467)
. +....++.+.+.++...|++++|...+++++.. +|....+
T Consensus 81 ~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 81 H-------------------------------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp C-------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred c-------------------------------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 0 011235678899999999999999999988866 3555666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC---------C
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEK--------LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---------Q 217 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~--------~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---------~ 217 (467)
+...|.++...|++++|+..+++++.. .|.... ++..+|.+|...|++++|+..|++++++ .
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK-TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 778889999999999999999999988 555544 4588999999999999999999999753 1
Q ss_pred C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 218 H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 218 ~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
. ...++..++.++...+....+ ..+..+..++.......+.....+..+|.++...|++++|..+|+++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDS-APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 223455555555554444433 34555555554433344555567778999999999999999999999864
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=1.7e-13 Score=137.03 Aligned_cols=236 Identities=11% Similarity=-0.028 Sum_probs=168.6
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhcc---CCCch---HHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKR---NLADE---SSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~---~p~d~---~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
+.+|.++..+|++++|+..|++++.. .+++. .++...+..+.. .++...++..+.+.....+. .
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~-------~ 176 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY---MKQTYFSMDYARQAYEIYKE-------H 176 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHT-------C
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHh-------C
Confidence 34899999999999999999999886 23222 222222222222 24556666665544322110 0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc------hHHHHHHHHHHhcCChhHHHHHHHHHHH--
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAE-- 180 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~------~~~ll~a~l~~~~~~~~~A~~~l~~~l~-- 180 (467)
.-.......++.+.+.++...|++++|...+++++...+... .++...|.++...|++++|+..+++++.
T Consensus 177 --~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 177 --EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp --STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 001234456788999999999999999999999887655432 2456788899999999999999999998
Q ss_pred ---hC-CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---Ch---hHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 012265 181 ---KL-PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MP---ATVATLVALKERAGD---IDGAAAVLDSAI 247 (467)
Q Consensus 181 ---~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p---~~~~~l~~ly~~~g~---~~~A~~~l~~al 247 (467)
.+ |.... +.+.+|.+|...|++++|+..|++++++.. ++ ..+..++.+|...|+ +++|+.++++.-
T Consensus 255 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~ 333 (383)
T 3ulq_A 255 EESNILPSLPQ-AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM 333 (383)
T ss_dssp HHTTCGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT
T ss_pred HhhccchhHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc
Confidence 45 65554 458999999999999999999999986421 22 224568999999999 455555554431
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 248 KWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..+....++..+|.++...|++++|...|++++...
T Consensus 334 --------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 334 --------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 223344566778999999999999999999999865
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=2.7e-13 Score=119.26 Aligned_cols=167 Identities=14% Similarity=0.034 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhc
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDL 110 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 110 (467)
..++..+|.++...|++++|+..|++++...|.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------------------------- 43 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD-------------------------------------------- 43 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH--------------------------------------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH--------------------------------------------
Confidence 456788999999999999999999998877664311
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
++++.+.+++..|++++|...+++++..+|++..++...+.++...|++++|+..+++++..+|++... +
T Consensus 44 ---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~ 113 (186)
T 3as5_A 44 ---------VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV-R 113 (186)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-H
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH-H
Confidence 234557777888999999999999999999999888889999999999999999999999999998765 4
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
+.+|.+|...|++++|+..|++++...+ .+.++..++.+|...|++++|...+++++...+
T Consensus 114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999987654 667788899999999999999999999988754
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=7.3e-13 Score=132.50 Aligned_cols=273 Identities=10% Similarity=-0.045 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCC---CchHHHH---H-HHhhhhhccC-----------CCChhHHHHhhhh
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNL---ADESSFA---V-AVNNLVALKG-----------PKDVNDSLKKLDR 93 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p---~d~~~~~---v-a~nnl~~l~~-----------~~~~~~a~~~l~~ 93 (467)
...+.-.|.+..++++++|..+++.+...-+ .|..+.+ + .....+.+.. .....+.++.+..
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~ 92 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK 92 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh
Confidence 5567788999999999999999999966532 2443331 1 1000000110 0111133443332
Q ss_pred hhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC---chHHHHHHHHHHhcCC
Q 012265 94 IKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM---FPDS---VMPLLLQAAVLVRENK 167 (467)
Q Consensus 94 ~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~---~~~~ll~a~l~~~~~~ 167 (467)
.... .+. ...--.++..+.+++..|++++|...+++++.. .++. ..++...|.++...|+
T Consensus 93 ~~~~-------~~~-------~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 93 KQAR-------LTG-------LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HTHH-------HHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCC-------chh-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 1110 000 011124566899999999999999999988765 3332 3456678889999999
Q ss_pred hhHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHcCChHHHHHHHhccccCCC----C---hhHHHHHHHHHHHcC
Q 012265 168 AGKAEELLGQFAEKLPDKS------KIILLARAQVAAAANHPFIAAESLAKIPDIQH----M---PATVATLVALKERAG 234 (467)
Q Consensus 168 ~~~A~~~l~~~l~~~P~~~------~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~---p~~~~~l~~ly~~~g 234 (467)
+++|+..+.++++..+... ..++..+|.+|...|++++|+..|++++++.. . ..++..++.+|..+|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999998754321 12457899999999999999999999986421 1 135678999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---CHH---HHHHHHHHhccCC
Q 012265 235 DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---SIE---ALVGLVTTSAHVD 308 (467)
Q Consensus 235 ~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d~~---ala~Lv~a~~~~d 308 (467)
++++|+..|++++...+... ..+.....+..+|.++...|++++|...|++++...+ +.. .+..+...+....
T Consensus 239 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESN-ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999875532 1144456677899999999999999999999998752 321 1233444554433
Q ss_pred ----hhHHHHHHhcC
Q 012265 309 ----VDKAESYEKRL 319 (467)
Q Consensus 309 ----~~kA~~l~~~L 319 (467)
..+|..+.+..
T Consensus 318 ~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK 332 (383)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHC
Confidence 56677766654
No 66
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.55 E-value=4.7e-14 Score=152.71 Aligned_cols=169 Identities=18% Similarity=0.099 Sum_probs=150.3
Q ss_pred HHcCCHHHHHHHHHhcc--------ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 129 LHANKMDQARELVAALP--------DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 129 l~~~~~~~A~~~~~~l~--------~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
+..|++++|++.+++++ ..+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL-VWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH-HHHHHHHHHHc
Confidence 77899999999999999 8999999999999999999999999999999999999999875 48999999999
Q ss_pred CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhH
Q 012265 201 NHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREED 279 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~ 279 (467)
|++++|+..|++++++++ ++..+..++.+|..+|++++ +..|++++... +....++..+|.++...|++++
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998775 67888899999999999999 99999999752 2223467778999999999999
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHhcc
Q 012265 280 ASHLFEELVKTHGS-IEALVGLVTTSAH 306 (467)
Q Consensus 280 A~~~le~ll~~~pd-~~ala~Lv~a~~~ 306 (467)
|+..|+++++.+|+ ..++..+..++..
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999999999987 5677777777633
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.4e-13 Score=128.26 Aligned_cols=196 Identities=16% Similarity=0.039 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265 114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR 193 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L 193 (467)
.+....++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~l 117 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH-HHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHH-HHHH
Confidence 345566889999999999999999999999999999999999999999999999999999999999999998765 4899
Q ss_pred HHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
|.+|...|++++|+..|++++++.+..........++...|++++|+..+.+++... +.+.. .+. ++.+++.
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~-~~~~~~~ 189 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQW---GWN-IVEFYLG 189 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCST---HHH-HHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CcchH---HHH-HHHHHHH
Confidence 999999999999999999999766533333344456677899999999999988752 22222 222 5777888
Q ss_pred CCChhHHHHHHHHHHHhcCC-----HHHHHHHHHHh-ccCChhHHHHHHhc
Q 012265 274 HGREEDASHLFEELVKTHGS-----IEALVGLVTTS-AHVDVDKAESYEKR 318 (467)
Q Consensus 274 ~g~~~~A~~~le~ll~~~pd-----~~ala~Lv~a~-~~~d~~kA~~l~~~ 318 (467)
.++.++|...|++++...|. ..++..+..++ ...+.++|..+...
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999887653 35566666666 45668888877654
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.54 E-value=4.2e-13 Score=145.29 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=151.7
Q ss_pred HHhCChHHHHHHHHHHh--------ccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 42 QLLGNTQEAFGAYTDII--------KRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 42 ~~~G~~~eA~~~y~~~l--------~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
...|++++|++.|++++ ..+|++..+++..+..+...+ +..+|...+.++....|+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~------------- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGW------------- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCC-------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcc-------------
Confidence 67899999999999999 888998888876555554444 455555555544333222
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265 114 PKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLAR 193 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~L 193 (467)
...++++.+.+++..|++++|+..|+++++.+|++..+++..|.++...|++++ +..|+++++.+|++... ++.+
T Consensus 466 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a-~~~l 540 (681)
T 2pzi_A 466 ---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISA-AFGL 540 (681)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHH-HHHH
T ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHH-HHHH
Confidence 235789999999999999999999999999999999999999999999999999 99999999999999875 4999
Q ss_pred HHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHh
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGA-AAVLDSAIKWWLNA 253 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A-~~~l~~al~~~~~~ 253 (467)
|.+|...|++++|+..|++++++++ ++..+..++.+|...++.+++ ...+++|+..+...
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999998876 466777888888887775555 56666776665443
No 69
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.3e-13 Score=124.74 Aligned_cols=181 Identities=12% Similarity=0.029 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..+++.|..+..+|++++|+..|++++..+|++..+++... +.. . .
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----~~~--~-~-------------------------- 50 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN-----VDK--N-S-------------------------- 50 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHH-----SCT--T-S--------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhh-----hcc--h-h--------------------------
Confidence 34688999999999999999999999999998877665321 100 0 0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
.....+.++.+.++...|++++|+..++++++.+|++..+++..|.++...|++++|+..|+++++.+|++... ++
T Consensus 51 ---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a-~~ 126 (208)
T 3urz_A 51 ---EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA-NI 126 (208)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HH
T ss_pred ---hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HH
Confidence 00123567889999999999999999999999999999999999999999999999999999999999999876 48
Q ss_pred HHHHHHHHcCC--hHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANH--PFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 192 ~Laql~~~~g~--~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
.+|.+|...|+ ...+...+.+++...+....+..++..+...|++++|+..|++++..+
T Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999977654 556777888876543322235567888888999999999999999753
No 70
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=2.9e-13 Score=120.40 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
..+.+|.++...|++++|+..|++++..+|++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------------------------------------- 41 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------------------------------------------- 41 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH----------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----------------------------------------------
Confidence 3578899999999999999999998887765432
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHH-HhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVL-VRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~-~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
++++.+.+++..|++++|+..+++++..+| +.....+.+.+. ...+...+|+..|+++++.+|++... ++
T Consensus 42 -------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~-~~ 112 (176)
T 2r5s_A 42 -------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFEL-AC 112 (176)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHH-HH
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHH-HH
Confidence 344567788889999999999999999999 766555555443 33344556899999999999999875 49
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHM---PATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~---p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
.+|.+|...|++++|+..|++++...+. +.++..++.+|..+|+.++|+..|++++.
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999987753 45788999999999999999999998875
No 71
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.52 E-value=3.1e-13 Score=130.42 Aligned_cols=163 Identities=15% Similarity=0.046 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..++.+|..+..+|++++|+.+|++++..+|++..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------------------------------------- 152 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE--------------------------------------------- 152 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH---------------------------------------------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh---------------------------------------------
Confidence 45788999999999999999999999998885532
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
++++.+.+++..|++++|...+++++..+|+.....+..+..+...++.++|+..|++++..+|++... ++
T Consensus 153 --------a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~-~~ 223 (287)
T 3qou_A 153 --------IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAAL-AT 223 (287)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHH-HH
T ss_pred --------HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHH-HH
Confidence 234567888999999999999999999999766555555555778889999999999999999999875 59
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCC-C--hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQH-M--PATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~-~--p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
.||.+|...|++++|+..|++++..++ . +.++..++.+|...|+.++|...|++++.
T Consensus 224 ~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 224 QLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999997665 2 66788999999999999999999998875
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.50 E-value=2.3e-13 Score=131.59 Aligned_cols=239 Identities=12% Similarity=0.006 Sum_probs=165.8
Q ss_pred chHHHHHHHhhhh-----hcCCCCC-hhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhh
Q 012265 3 LMYLIFVRIGQET-----LTDDNFA-EDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLV 76 (467)
Q Consensus 3 ~~l~~A~~~~~~~-----l~~~~~~-~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~ 76 (467)
.++..|++.++.+ +-. -. ++ .-.+-.....+.+.+|..+|++++|+..|.+++...+.
T Consensus 6 ~~~~~a~k~~~~~~~~~~~~~--~~~~~-~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~------------- 69 (292)
T 1qqe_A 6 ELLKRAEKKGVPSSGFMKLFS--GSDSY-KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK------------- 69 (292)
T ss_dssp HHHHHHHHHSSCCCTHHHHHS--CCSHH-HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhCcCCCcchhcC--CCCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------
Confidence 3567788877653 321 11 22 23344456667788888999999999999888764210
Q ss_pred hccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc----
Q 012265 77 ALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSV---- 152 (467)
Q Consensus 77 ~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---- 152 (467)
+ .+. .....++.|.+.++...|++++|+..+++++..+|...
T Consensus 70 -~---~~~------------------------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 70 -A---GNE------------------------------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp -T---TCH------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -h---CCH------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0 000 01123567889999999999999999999888776532
Q ss_pred --hHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Ch---
Q 012265 153 --MPLLLQAAVLVRE-NKAGKAEELLGQFAEKLPDKS-----KIILLARAQVAAAANHPFIAAESLAKIPDIQH-MP--- 220 (467)
Q Consensus 153 --~~~ll~a~l~~~~-~~~~~A~~~l~~~l~~~P~~~-----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p--- 220 (467)
.++...|.++... |++++|+..|+++++.+|++. ..++..+|.+|..+|++++|+..|++++++.+ .+
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 2445677788886 999999999999999877531 12357889999999999999999999987543 11
Q ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH--HCCChhHHHHHHHHHHHhcCC
Q 012265 221 ----ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL--RHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 221 ----~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l--~~g~~~~A~~~le~ll~~~pd 293 (467)
.++..++.+|..+|++++|+..|++++...+.... ... ...+..++..+. ..+++++|+..|++++..+|.
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~-~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-SRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHH-HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 14567899999999999999999999875433221 111 123444455553 357789999999998887765
No 73
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.50 E-value=8.3e-13 Score=122.39 Aligned_cols=167 Identities=8% Similarity=-0.001 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..++++|..+..+|++++|+..|++++...|.+...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------------------------------------------- 40 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS-------------------------------------------- 40 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH--------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--------------------------------------------
Confidence 346889999999999999999999999988854210
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch---HHHHHHHHHHh------------------cCChhH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVM---PLLLQAAVLVR------------------ENKAGK 170 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~---~~ll~a~l~~~------------------~~~~~~ 170 (467)
..++++.+.+++..|++++|+..++++++.+|++.. +++..|.++.. .|++++
T Consensus 41 ------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (225)
T 2yhc_A 41 ------QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA 114 (225)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHH
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence 013456677777888888888888888888887764 45556665543 567888
Q ss_pred HHHHHHHHHHhCCCcHHHH----------------HHHHHHHHHHcCChHHHHHHHhccccCCC-Ch---hHHHHHHHHH
Q 012265 171 AEELLGQFAEKLPDKSKII----------------LLARAQVAAAANHPFIAAESLAKIPDIQH-MP---ATVATLVALK 230 (467)
Q Consensus 171 A~~~l~~~l~~~P~~~~~~----------------~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p---~~~~~l~~ly 230 (467)
|+..|+++++.+|++.... .+.+|.+|...|++++|+..|+++++..+ ++ .++..++.+|
T Consensus 115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 8888888888888865321 15678899999999999999999987544 33 5678899999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 012265 231 ERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 231 ~~~g~~~~A~~~l~~al~ 248 (467)
..+|++++|+..++.+..
T Consensus 195 ~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHh
Confidence 999999999999998765
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=8.3e-12 Score=123.95 Aligned_cols=276 Identities=12% Similarity=0.010 Sum_probs=186.9
Q ss_pred HHHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCC--chHHHHHHHhhhhh-ccCC
Q 012265 5 YLIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLA--DESSFAVAVNNLVA-LKGP 81 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~--d~~~~~va~nnl~~-l~~~ 81 (467)
+..|...+++.|.... ..+ ......+...+|.++..+|++++|...|++++...+. +......+.+++.. ....
T Consensus 30 ~~~A~~~~~~al~~~~--~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 30 PDEAERLAKLALEELP--PGW-FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp HHHHHHHHHHHHHTCC--TTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC--CCc-hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 5678888888887432 111 1123456778999999999999999999999887543 22222222222211 1112
Q ss_pred CChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC-----chHHH
Q 012265 82 KDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS-----VMPLL 156 (467)
Q Consensus 82 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~-----~~~~l 156 (467)
+++..+...+.+...... ..... ..+....++.+.+.+++..|++++|...+++.+...+.. ..++.
T Consensus 107 G~~~~A~~~~~~al~~~~-------~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLIN-------EQHLE-QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp TCHHHHHHHHHHHHHHHH-------HTTCT-TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-------Hhccc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 455556555554322110 00000 001234567789999999999999999999988777653 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCC--c-HHHH---HHHHHHHHHHcCChHHHHHHHhccccCCCC-----hhHHHH
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPD--K-SKII---LLARAQVAAAANHPFIAAESLAKIPDIQHM-----PATVAT 225 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~--~-~~~~---~l~Laql~~~~g~~~~A~~~L~~~~~~~~~-----p~~~~~ 225 (467)
..+.++...|++++|+..+++++...+. . .... .+.++.++...|++++|...+++++..... ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7788899999999999999999876322 2 1111 114556688999999999999999865431 123567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
++.++...|++++|...+++++....... .......++..+|.++...|++++|...|++++...+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999998765422 1112223455679999999999999999999998763
No 75
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.49 E-value=5.9e-14 Score=121.98 Aligned_cols=145 Identities=10% Similarity=0.025 Sum_probs=120.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 203 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~ 203 (467)
.+.++...|++++|+..++.....+|++....+..|.+|...|++++|+..|+++++.+|++... ++.+|.+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a-~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA-HRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCch
Confidence 45566677889999999999999999988888999999999999999999999999999999876 48999999999999
Q ss_pred HHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265 204 FIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA-VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 276 (467)
Q Consensus 204 ~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~-~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~ 276 (467)
++|+..|++++++++ ++.++..++.+|...|++++|.. ++++++... |+++ .++...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~---~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSP---AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCH---HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCH---HHHHHHHHHHHHhCc
Confidence 999999999998876 78889999999999999987665 468998763 2222 234445777777775
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=2.4e-12 Score=125.20 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=166.0
Q ss_pred HHHHHHhhhhhcCCCCChhhHHhhhhhHHHHHHHHHH-------HhCCh-------HHHHHHHHHHhc-cCCCchHHHHH
Q 012265 6 LIFVRIGQETLTDDNFAEDDIEIELAPIAVQLAYVQQ-------LLGNT-------QEAFGAYTDIIK-RNLADESSFAV 70 (467)
Q Consensus 6 ~~A~~~~~~~l~~~~~~~ee~~~El~~i~~qlA~v~~-------~~G~~-------~eA~~~y~~~l~-~~p~d~~~~~v 70 (467)
..|...++..+..+ +.-..+|+.+|.++. ..|++ ++|..+|++++. ..|++..++..
T Consensus 33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHH
Confidence 45666666666532 334467888887776 35886 999999999999 68988877654
Q ss_pred HHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC
Q 012265 71 AVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD 150 (467)
Q Consensus 71 a~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~ 150 (467)
.+.-+... ++...+...+.++....|. ....++.+.+.++...|++++|+..+++++...|.
T Consensus 105 ~~~~~~~~---~~~~~A~~~~~~al~~~p~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 105 YADYEESR---MKYEKVHSIYNRLLAIEDI---------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHTSSSS---------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHhc---CCHHHHHHHHHHHHhcccc---------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 43333222 3455555555443322111 11126788899999999999999999999999998
Q ss_pred CchHHHHHHHHHH-hcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC---CC--ChhHHH
Q 012265 151 SVMPLLLQAAVLV-RENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---QH--MPATVA 224 (467)
Q Consensus 151 ~~~~~ll~a~l~~-~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~--~p~~~~ 224 (467)
+..+++..+.+.. ..|++++|+.+|+++++.+|++...+ +.++.++...|++++|+.+|++++.. .+ ...++.
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV-LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 8777665554433 37999999999999999999998764 89999999999999999999999874 32 445788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
.++.++...|+.+.|..++++++..++
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 889999999999999999999998754
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=4.9e-12 Score=125.60 Aligned_cols=274 Identities=17% Similarity=0.023 Sum_probs=182.9
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHH-HHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 31 APIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESS-FAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~-~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
..+.+.+|.++..+|++++|...+++++...|.+... ...+.+++.. ....++...+...+.+.....+. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~ 86 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-------H 86 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-------c
Confidence 3456778999999999999999999999987754332 2222222211 11123455555555443222111 0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC--------CCchHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP--------DSVMPLLLQAAVLVRENKAGKAEELLGQFAE 180 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P--------~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~ 180 (467)
-.......+.++.+.+++..|++++|...+++++...+ ....+....+.++...|++++|+..+.+++.
T Consensus 87 ---~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (373)
T 1hz4_A 87 ---DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163 (373)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 01122334578899999999999999999998876542 2223455678889999999999999999999
Q ss_pred hCCCc----HHHHHHHHHHHHHHcCChHHHHHHHhccccCC---CCh-hHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 181 KLPDK----SKIILLARAQVAAAANHPFIAAESLAKIPDIQ---HMP-ATVA----TLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 181 ~~P~~----~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~---~~p-~~~~----~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
..|.. ...++..++.++...|++++|...|++++.+. ..+ .+.. .++.++...|++++|..++++++.
T Consensus 164 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 164 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 87652 11245789999999999999999999987531 122 2221 344568899999999999998874
Q ss_pred HHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---CH----HHHHHHHHHh-ccCChhHHHHHHh
Q 012265 249 WWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---SI----EALVGLVTTS-AHVDVDKAESYEK 317 (467)
Q Consensus 249 ~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d~----~ala~Lv~a~-~~~d~~kA~~l~~ 317 (467)
.. +.........+..+|.+++..|++++|...|++++...+ .. .++..+..++ ...+.+.|..+..
T Consensus 244 ~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 244 PE---FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp CC---CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CC---CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 21 111111122345679999999999999999999988652 11 2334444444 4566777766544
No 78
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=8.1e-12 Score=118.55 Aligned_cols=221 Identities=14% Similarity=0.039 Sum_probs=168.9
Q ss_pred CCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH----cCCHHH
Q 012265 61 NLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLH----ANKMDQ 136 (467)
Q Consensus 61 ~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~----~~~~~~ 136 (467)
+|.++.+.+..+..+... .+...++..+.+.... .....+++.+.++.. .+++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~------------------~~~~a~~~lg~~~~~g~~~~~~~~~ 60 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE---KDFTQAKKYFEKACDL------------------KENSGCFNLGVLYYQGQGVEKNLKK 60 (273)
T ss_dssp ---CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHcCCCcCCCHHH
Confidence 355666665444433322 3556666666543221 122467899999999 999999
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----cCChHHHHH
Q 012265 137 ARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA----ANHPFIAAE 208 (467)
Q Consensus 137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~----~g~~~~A~~ 208 (467)
|...++++.... +..++...+.++.. .+++++|+..|+++++.. +... .+.+|.+|.. .+++++|+.
T Consensus 61 A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a-~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 61 AASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEG-CASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-HHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccH-HHHHHHHHHcCCCcccCHHHHHH
Confidence 999999988764 67788888999999 999999999999999874 5554 4899999999 999999999
Q ss_pred HHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----CCChhHH
Q 012265 209 SLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGREEDA 280 (467)
Q Consensus 209 ~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A 280 (467)
.|+++++.. .+..+..++.+|.. .+++++|+.+|++++.. ++ ...+..+|.++.. .+++++|
T Consensus 136 ~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------~~---~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 136 YFTKACDLN-DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL------KD---SPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC---HHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CC---HHHHHHHHHHHHcCCCCCccHHHH
Confidence 999998765 46677789999998 99999999999999863 11 1345668999999 9999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhc-----cCChhHHHHHHhc
Q 012265 281 SHLFEELVKTHGSIEALVGLVTTSA-----HVDVDKAESYEKR 318 (467)
Q Consensus 281 ~~~le~ll~~~pd~~ala~Lv~a~~-----~~d~~kA~~l~~~ 318 (467)
..+|+++++..+ ..+...|..+|. ..|.++|..+.++
T Consensus 206 ~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 206 LARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 999999998765 556667776664 4667888776543
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.48 E-value=6.5e-14 Score=121.70 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+.+|+..|++++|++.++++++.+|++..++...|.++...|++++|+..|+++++.+|++...+ +.+|.+|.
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 110 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLV-LKIAELLC 110 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999998764 89999999
Q ss_pred HcCChHHHHHH-HhccccCCC-ChhHHHHHHHHHHHcCC
Q 012265 199 AANHPFIAAES-LAKIPDIQH-MPATVATLVALKERAGD 235 (467)
Q Consensus 199 ~~g~~~~A~~~-L~~~~~~~~-~p~~~~~l~~ly~~~g~ 235 (467)
..|++++|+.. +++++++++ +|.++...+.++..+|+
T Consensus 111 ~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 111 KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999887765 589988776 78888888888888875
No 80
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.48 E-value=3.6e-13 Score=129.97 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+..++..|++++|...+++++..+|++..+++..|.++...|++++|+..|++++..+|+.. ...+.++..+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR-YQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-HHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777543 23344444566
Q ss_pred HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265 199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 277 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~ 277 (467)
..++.++|+..|++++...+ ++.++..++.+|...|++++|+..|.+++...+ +... ..++..++.++...|+.
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p----~~~~-~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL----TAAD-GQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TGGG-GHHHHHHHHHHHHHCTT
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccc-chHHHHHHHHHHHcCCC
Confidence 66777777777777766554 566666777777777777777777777766421 1100 22345567777777777
Q ss_pred hHHHHHHHHHHH
Q 012265 278 EDASHLFEELVK 289 (467)
Q Consensus 278 ~~A~~~le~ll~ 289 (467)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 777777777664
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=2.2e-13 Score=121.15 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA- 198 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~- 198 (467)
..+..+..++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|++++...| +... ...++.+.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~-~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY-KSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH-HHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999 6653 344555533
Q ss_pred HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCh
Q 012265 199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGRE 277 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~ 277 (467)
..+...+|+..|++++...+ ++.++..++.+|...|++++|+..|++++... |+... ...+..+|.++...|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~-~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN----LGAQD-GEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTTTT-THHHHHHHHHHHHHCSS
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----cccCh-HHHHHHHHHHHHHhCCC
Confidence 33455568999999988765 67888899999999999999999999988642 11111 12456689999999999
Q ss_pred hHHHHHHHHHHH
Q 012265 278 EDASHLFEELVK 289 (467)
Q Consensus 278 ~~A~~~le~ll~ 289 (467)
++|+..|++++.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999998875
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=8.5e-13 Score=126.43 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDM--------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL----- 182 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~--------~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~----- 182 (467)
....++++.+.+++..|++++|...+++++.. +|....++...|.++...|++++|+..+++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34457788999999999999999999998873 56566677788999999999999999999999863
Q ss_pred ---CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC------CC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 183 ---PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI------QH---MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 183 ---P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~------~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
|.... ++..+|.+|...|++++|+..|++++++ .. ...++..++.+|...|++++|+.+|++++..+
T Consensus 105 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 105 KDHPAVAA-TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp TTCHHHHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33333 4588999999999999999999999864 21 23456788999999999999999999999887
Q ss_pred HHhcc-CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 251 LNAMT-EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 251 ~~~~~-~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
....+ +.+....++..+|.++...|++++|..+|++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55422 23444556777899999999999999999999975
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=1.5e-12 Score=130.13 Aligned_cols=241 Identities=14% Similarity=0.009 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCC--CchHHHHHHHhhhhh-ccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNL--ADESSFAVAVNNLVA-LKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p--~d~~~~~va~nnl~~-l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
.++.+|..+..+|++++|+..|++++.... .+......+..++.. ....++...++..+.+.....+. .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~-------~- 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN-------H- 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------S-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-------C-
Confidence 456789999999999999999999987642 232222222222211 11124556666665543322110 0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---CC---chHHHHHHHHHHhcCChhHHHHHHHHHHH---
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---DS---VMPLLLQAAVLVRENKAGKAEELLGQFAE--- 180 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~--- 180 (467)
.-.......++.+.+.++...|++++|...+++++...+ +. ..++...|.++...|++++|+..+++++.
T Consensus 175 -~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 175 -PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 001223456788999999999999999999998876543 21 12455678889999999999999999999
Q ss_pred --hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---C---hhHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 012265 181 --KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---M---PATVATLVALKERAGD---IDGAAAVLDSAIKW 249 (467)
Q Consensus 181 --~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~---p~~~~~l~~ly~~~g~---~~~A~~~l~~al~~ 249 (467)
.+|.... +.+.+|.+|...|++++|+..+++++++.. + ...+..++.+|...++ +.+|+..+++.-
T Consensus 254 ~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-- 330 (378)
T 3q15_A 254 EKVPDLLPK-VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-- 330 (378)
T ss_dssp HHCGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--
T ss_pred hhCChhHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--
Confidence 7777744 458999999999999999999999986321 2 2335667888888888 555555554421
Q ss_pred HHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 250 WLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 250 ~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..+....++..+|.++...|++++|...|+++++..
T Consensus 331 ------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 331 ------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 123344556678999999999999999999999754
No 84
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.46 E-value=8.9e-11 Score=121.54 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=100.4
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 120 IYANRVLLLLH----ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 120 l~~n~all~l~----~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
.+++.+.++.. .+++++|...+++.... ++..+....+.++.. .+++++|+..++++++.. +... .+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a-~~ 259 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIA-QF 259 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHH-HH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH-HH
Confidence 45555666655 56666666666665542 344455555555554 556666666666665542 2222 35
Q ss_pred HHHHHHHH----cCChHHHHHHHhccccCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhccCCchHHH
Q 012265 192 ARAQVAAA----ANHPFIAAESLAKIPDIQHMPATVATLVALKERA-----GDIDGAAAVLDSAIKWWLNAMTEDNKLSV 262 (467)
Q Consensus 192 ~Laql~~~----~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~-----g~~~~A~~~l~~al~~~~~~~~~~~~~~~ 262 (467)
.|+.+|.. .+++++|+.+|+++.+.. ++.....|+.+|... +++++|+.+|++++.. ++ ..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~------~~---~~ 329 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ------GD---AT 329 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT------TC---HH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc------CC---HH
Confidence 66666666 666666666666665432 344455666666665 6666666666666542 01 12
Q ss_pred HHHHHHHHHHHCC---ChhHHHHHHHHHHHhcCCHHHHHHHHHHhcc-----CChhHHHHHHh
Q 012265 263 IMQEAASFKLRHG---REEDASHLFEELVKTHGSIEALVGLVTTSAH-----VDVDKAESYEK 317 (467)
Q Consensus 263 ll~~la~~~l~~g---~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~-----~d~~kA~~l~~ 317 (467)
.+..+|.++...| ++++|+.+|+++++. .+..++..|...|.. .|.++|..+.+
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 2344566665544 556666666666654 344455555554432 45566655543
No 85
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.46 E-value=8.7e-11 Score=121.62 Aligned_cols=184 Identities=15% Similarity=0.039 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 119 AIYANRVLLLLH----ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVR----ENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 119 ~l~~n~all~l~----~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~----~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
..+++.+.+++. .+++++|...++++... ++..+....+.++.. .+++++|+..|+++++. ++... .
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a-~ 294 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG-Q 294 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH-H
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH-H
Confidence 467788888886 78899999999988754 556677778888877 88999999999998876 34444 4
Q ss_pred HHHHHHHHHc-----CChHHHHHHHhccccCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhccCCchHHH
Q 012265 191 LARAQVAAAA-----NHPFIAAESLAKIPDIQHMPATVATLVALKERAG---DIDGAAAVLDSAIKWWLNAMTEDNKLSV 262 (467)
Q Consensus 191 l~Laql~~~~-----g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g---~~~~A~~~l~~al~~~~~~~~~~~~~~~ 262 (467)
+.|+.+|... +++++|+.+|+++.+.. ++.....|+.+|...| ++++|+.+|++++.. ++ ..
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~------~~---~~ 364 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK------GE---KA 364 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT------TC---HH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC------CC---HH
Confidence 8899999988 89999999999988754 4566778888888866 788899999988763 11 23
Q ss_pred HHHHHHHHHHH----CCChhHHHHHHHHHHHhcCCHHHHHHHHHHhc-----cCChhHHHHHHhc
Q 012265 263 IMQEAASFKLR----HGREEDASHLFEELVKTHGSIEALVGLVTTSA-----HVDVDKAESYEKR 318 (467)
Q Consensus 263 ll~~la~~~l~----~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~-----~~d~~kA~~l~~~ 318 (467)
.+..+|.++.. .+++++|+.+|+++++.. +..++..|...|. ..|.++|..+..+
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 46668999988 889999999999998754 5667777777775 4778888776543
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.42 E-value=2.1e-12 Score=136.51 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265 131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL 210 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L 210 (467)
.|++++|...++++++.+|++..++...|.++...|++++|+..|+++++.+|++... ++.+|.+|..+|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA-VARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH-HHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999875 489999999999999999999
Q ss_pred hccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHC---CChhHHHHHHHH
Q 012265 211 AKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH---GREEDASHLFEE 286 (467)
Q Consensus 211 ~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~---g~~~~A~~~le~ 286 (467)
+++++..+ ++..+..++.+|..+|++++|+..|++++... + ....++..+|.++... |++++|...|++
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----P---EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T---TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99998765 67788899999999999999999999999763 1 1223566689999999 999999999999
Q ss_pred HHHhcCC
Q 012265 287 LVKTHGS 293 (467)
Q Consensus 287 ll~~~pd 293 (467)
+++.+|+
T Consensus 154 al~~~p~ 160 (568)
T 2vsy_A 154 AVAQGVG 160 (568)
T ss_dssp HHHHTCC
T ss_pred HHhcCCc
Confidence 9999875
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=1.6e-10 Score=115.23 Aligned_cols=269 Identities=13% Similarity=0.065 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhccCC---CchHHHH---HH-HhhhhhccCCC---------ChhHHHHhhhhhhhh
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKRNL---ADESSFA---VA-VNNLVALKGPK---------DVNDSLKKLDRIKEK 97 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~~p---~d~~~~~---va-~nnl~~l~~~~---------~~~~a~~~l~~~~~~ 97 (467)
.+.--|.+..++++++|..+++++...-. .|..+.+ +. ....+.+.... +..+.++.++.....
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 94 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK 94 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence 45556778999999999999998855421 3444331 11 11111111111 122444444332111
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCC---C---CchHHHHHHHHHHhcCChhHH
Q 012265 98 DMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFP---D---SVMPLLLQAAVLVRENKAGKA 171 (467)
Q Consensus 98 ~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P---~---~~~~~ll~a~l~~~~~~~~~A 171 (467)
.+....--.++..+..++..|++++|+..+++++...+ + ...++...|.++...|++++|
T Consensus 95 --------------~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A 160 (378)
T 3q15_A 95 --------------LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVS 160 (378)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHH
Confidence 01112223567889999999999999999998876542 2 223456778889999999999
Q ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHHcCChHHHHHHHhccccCC----C---ChhHHHHHHHHHHHcCCHHH
Q 012265 172 EELLGQFAEKLPDK------SKIILLARAQVAAAANHPFIAAESLAKIPDIQ----H---MPATVATLVALKERAGDIDG 238 (467)
Q Consensus 172 ~~~l~~~l~~~P~~------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~---~p~~~~~l~~ly~~~g~~~~ 238 (467)
+..++++++..+.. ...+...+|.+|...|++++|+..|++++++. . ...++..++.+|..+|++++
T Consensus 161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 99999999865431 12345789999999999999999999998642 1 12346679999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C--H-HHHHHHHHHhcc-CC---
Q 012265 239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S--I-EALVGLVTTSAH-VD--- 308 (467)
Q Consensus 239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d--~-~ala~Lv~a~~~-~d--- 308 (467)
|+..|++++...+... ++.....+..+|.++...|++++|...|++++...+ + . ..+..+...+.. .+
T Consensus 241 A~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 241 AVEHFQKAAKVSREKV--PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999998775432 233355677799999999999999999999999853 2 2 223333333433 33
Q ss_pred hhHHHHHHhc
Q 012265 309 VDKAESYEKR 318 (467)
Q Consensus 309 ~~kA~~l~~~ 318 (467)
..+|..+.+.
T Consensus 319 ~~~al~~~~~ 328 (378)
T 3q15_A 319 IHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5566666554
No 88
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.41 E-value=6.7e-12 Score=122.06 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=142.2
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCC------chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--c---HHHHHHHH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--K---SKIILLAR 193 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~---~~~~~l~L 193 (467)
+.++...|++++|...+.+++..++.. ..++...+.++...|++++|+..|+++++.++. + ...++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567778899999999999887765432 123445667788899999999999999987542 1 12344788
Q ss_pred HHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQE 266 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~ 266 (467)
|.+|.. |++++|+..|++++++.. ...++..++.+|..+|++++|+..|++++..++.... .......+..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~ 200 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIA 200 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHH
Confidence 999988 999999999999986432 1345678899999999999999999999998765321 1222335666
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCC------HHHHHHHHHHhccCChhHHHH
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGS------IEALVGLVTTSAHVDVDKAES 314 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd------~~ala~Lv~a~~~~d~~kA~~ 314 (467)
+|.+++..|++++|...|++++ .+|+ ...+..++.++...|.+.+..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7899999999999999999999 8874 134566777777777766655
No 89
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=1.5e-10 Score=121.06 Aligned_cols=193 Identities=11% Similarity=0.072 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHH-------cCCHH-------HHHHHHHhccc-cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 012265 118 EAIYANRVLLLLH-------ANKMD-------QARELVAALPD-MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL 182 (467)
Q Consensus 118 ~~l~~n~all~l~-------~~~~~-------~A~~~~~~l~~-~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~ 182 (467)
..++++.+.++.. .|+++ +|+..+++++. ..|++..+++..+.++...|++++|..+|+++++..
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 4577788888776 68877 99999999997 799999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265 183 PDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL-KERAGDIDGAAAVLDSAIKWWLNAMTEDNKL 260 (467)
Q Consensus 183 P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 260 (467)
|.+...+++.++.++.++|++++|+.+|+++++..+ ...++...+.+ +...|++++|..+|++++...+ ++
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p----~~--- 424 (530)
T 2ooe_A 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----DI--- 424 (530)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT----TC---
T ss_pred ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC----CC---
Confidence 988543558889999999999999999999997654 33443333333 4468999999999999998642 22
Q ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-----HHHHHHHHH-HhccCChhHHHHHHh
Q 012265 261 SVIMQEAASFKLRHGREEDASHLFEELVKTHGS-----IEALVGLVT-TSAHVDVDKAESYEK 317 (467)
Q Consensus 261 ~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-----~~ala~Lv~-a~~~~d~~kA~~l~~ 317 (467)
..+|..++.++...|+.++|..+|++++...|. ...+..++. ...+.|.+.+..+..
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 245777899999999999999999999997542 224444333 335677777766554
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.39 E-value=4.9e-12 Score=122.11 Aligned_cols=190 Identities=9% Similarity=0.028 Sum_probs=139.9
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCC------chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHHHHHHH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILLAR 193 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~~~l~L 193 (467)
+.++...|++++|...+.+++..++.. ..++...|.++...|++++|+..|++++..+|+. ...++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 557778999999999999888765321 2345567888899999999999999999887642 11244788
Q ss_pred HHHHHHc-CChHHHHHHHhccccCCC---C----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 194 AQVAAAA-NHPFIAAESLAKIPDIQH---M----PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 194 aql~~~~-g~~~~A~~~L~~~~~~~~---~----p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
|.+|..+ |++++|+..|++++++.+ . ..++..++.+|..+|++++|+..|++++...+............+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999997 999999999999986532 1 2356788999999999999999999999753211100001223566
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHhcCCH------HHHHHHHHHhccCChhHHHH
Q 012265 266 EAASFKLRHGREEDASHLFEELVKTHGSI------EALVGLVTTSAHVDVDKAES 314 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~~pd~------~ala~Lv~a~~~~d~~kA~~ 314 (467)
.+|.++...|++++|+..|++++..+|+. ..+..++.++...|.+....
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 78999999999999999999999988752 23556666776556444433
No 91
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=2.5e-11 Score=127.06 Aligned_cols=241 Identities=10% Similarity=0.042 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHhhhhhc----cCCCChh-------HHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265 48 QEAFGAYTDIIKRNLADESSFAVAVNNLVAL----KGPKDVN-------DSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 116 (467)
Q Consensus 48 ~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l----~~~~~~~-------~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q 116 (467)
..|..+|++++...|.++.+++..+.-+... ...++.. .+...+.+.... +. +.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~--------------~~-p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------LL-KK 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT--------------TC-SS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH--------------hC-cc
Confidence 4788999999999999988876544333221 0112322 444444443220 00 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc-hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV-MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~-~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
...++++.+.++...|++++|+.++++++..+|.+. .+++..+.++.+.|++++|..+|++++...|..... .+..+.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~-~~~~a~ 398 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV-YVTAAL 398 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH-HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH-HHHHHH
Confidence 345788999999999999999999999999999885 477777888888999999999999999988876443 244455
Q ss_pred H-HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHH
Q 012265 196 V-AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDN-KLSVIMQEAASFKL 272 (467)
Q Consensus 196 l-~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~-~~~~ll~~la~~~l 272 (467)
+ +...|++++|..+|+++++..+ ++.++..++.++...|+.+.|..+|++++... +.++ ....+|...+.+..
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~----~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----SLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC----CSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHH
Confidence 5 3469999999999999987655 78889999999999999999999999998741 1122 23446766788888
Q ss_pred HCCChhHHHHHHHHHHHhcCC---HHHHHHHHHHhccCC
Q 012265 273 RHGREEDASHLFEELVKTHGS---IEALVGLVTTSAHVD 308 (467)
Q Consensus 273 ~~g~~~~A~~~le~ll~~~pd---~~ala~Lv~a~~~~d 308 (467)
..|+.+.+..++.++++..|+ ......++.-|...|
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~~~~~ 513 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMD 513 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGTCBTT
T ss_pred HcCCHHHHHHHHHHHHHHCchhccCchHHHHHHHHHhcc
Confidence 999999999999999998874 122344444444444
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.34 E-value=1.1e-11 Score=104.37 Aligned_cols=113 Identities=10% Similarity=-0.064 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
+....+.|++..++..|++++|+..|++++..+|++..++...|.++...|++++|+..++++++.+|++... ++.+|.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a-~~~lg~ 89 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG-YIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH-HHHHHH
Confidence 4455778899999999999999999999999999999998899999999999999999999999999998875 488999
Q ss_pred HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH
Q 012265 196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL 229 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l 229 (467)
+|...|++++|+..|++++++++ ++.+...|+.+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999988765 56665555443
No 93
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.33 E-value=7.5e-11 Score=121.26 Aligned_cols=181 Identities=18% Similarity=0.085 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHcCCHHHHH----HHHHhccccCCCCchHHHHHHHHHHhcC---ChhHHHHHHHHHHHhCCCcHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQAR----ELVAALPDMFPDSVMPLLLQAAVLVREN---KAGKAEELLGQFAEKLPDKSKIILLA 192 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~----~~~~~l~~~~P~~~~~~ll~a~l~~~~~---~~~~A~~~l~~~l~~~P~~~~~~~l~ 192 (467)
.+++.+.++...+.++++. ..+..+...+| .+....+.++...| ++++|+..|+++++..|.....+ +.
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~-~~ 218 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV-DS 218 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH-HH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH-HH
Confidence 5667777777777544433 33444444344 36677777777777 77888888888888877765432 66
Q ss_pred HHHHHHHc----CChHHHHHHHhccccCCCChhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 012265 193 RAQVAAAA----NHPFIAAESLAKIPDIQHMPATVATLVAL-K--ERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQ 265 (467)
Q Consensus 193 Laql~~~~----g~~~~A~~~L~~~~~~~~~p~~~~~l~~l-y--~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~ 265 (467)
|+.+|... +++++|+.+|+++. ..++.....|+.+ | ...+++++|+.+|++++.. + ....+.
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~------g---~~~A~~ 287 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA------D---QPRAEL 287 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT------T---CHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC------C---CHHHHH
Confidence 77777544 67888888888877 4456666677776 4 4577888888888877642 1 122345
Q ss_pred HHHHHHHHCC-----ChhHHHHHHHHHHHhcCCHHHHHHHHHHhccC-----ChhHHHHHHhc
Q 012265 266 EAASFKLRHG-----REEDASHLFEELVKTHGSIEALVGLVTTSAHV-----DVDKAESYEKR 318 (467)
Q Consensus 266 ~la~~~l~~g-----~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~-----d~~kA~~l~~~ 318 (467)
.+|.+|. .| ++++|+.+|+++. ..+..+...|...|... |.++|..+..+
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 5677776 45 7788888888877 44566666666666443 66777666543
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=9.6e-12 Score=116.98 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHhccc--------cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC--------CCcHHHHHHHHHH
Q 012265 132 NKMDQARELVAALPD--------MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL--------PDKSKIILLARAQ 195 (467)
Q Consensus 132 ~~~~~A~~~~~~l~~--------~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--------P~~~~~~~l~Laq 195 (467)
|++++|+..+++++. .+|....++...|.++...|++++|+..+++++... |.... ++..+|.
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~ 93 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA-TLNNLAV 93 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH-HHHHHHH
Confidence 444445544444433 235556677788999999999999999999999773 43333 4588999
Q ss_pred HHHHcCChHHHHHHHhccccC------C--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHH
Q 012265 196 VAAAANHPFIAAESLAKIPDI------Q--H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQ 265 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~------~--~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~ 265 (467)
+|...|++++|+..|++++++ . + ...++..++.+|...|++++|+.+|++++..+..... +++....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999864 1 1 2345678899999999999999999999988755432 2344556777
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 266 EAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
.+|.++...|++++|..+|++++..
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999987
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.33 E-value=2.8e-12 Score=111.74 Aligned_cols=110 Identities=12% Similarity=-0.031 Sum_probs=97.6
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
..+.+++..+|++..+++..|.++...|++++|+..|++++..+|++...+ +.+|.+|...|++++|+..|++++.+++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~-~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI-MGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 446777888999999888899999999999999999999999999998764 8899999999999999999999988776
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
++.++..++.+|..+|++++|+..|++++..
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888889999999999999999999999875
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=8.5e-11 Score=97.13 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 233 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~ 233 (467)
+...+.++...|++++|+..+++++..+|++... ++.++.++...|++++|+..|++++...+ .+.++..++.+|...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA-WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhH-HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3445556666667777777777766666666543 35666677777777777777776665433 344555666777777
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
|++++|+.+|++++... +.+ ...+..+|.++...|++++|...|++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD----PRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhC----CCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 77777777777766542 111 123445677777778888888888777776653
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=5e-11 Score=98.55 Aligned_cols=129 Identities=15% Similarity=0.056 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
++++.+.+++..|++++|...++.++..+|++...+...+.++...|++++|+..+++++...|++... ++.++.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA-WYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH-HHHHHHHHHH
Confidence 467789999999999999999999999999998888888999999999999999999999999998765 4889999999
Q ss_pred cCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 200 ANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.|++++|+..|++++...+ .+.++..++.+|...|++++|...|++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999987654 5677788999999999999999999998864
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.29 E-value=2.1e-11 Score=102.51 Aligned_cols=106 Identities=9% Similarity=0.012 Sum_probs=95.6
Q ss_pred hccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh
Q 012265 143 ALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA 221 (467)
Q Consensus 143 ~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~ 221 (467)
++...+|+....+...|..+.+.|++++|+..|+++++.+|++... ++.+|.+|...|++++|+..|++++++++ ++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 3445788888888899999999999999999999999999999875 48999999999999999999999998875 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.+..++.+|..+|++++|+..|++++..
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999986
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.28 E-value=4.4e-11 Score=126.28 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=66.3
Q ss_pred hCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 012265 44 LGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYAN 123 (467)
Q Consensus 44 ~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n 123 (467)
.|++++|+..|++++..+|.+..++...+..+... ++..++...+.+.....++ ...++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~----------------~~~~~~~ 62 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM---GDTTAGEMAVQRGLALHPG----------------HPEAVAR 62 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTSTT----------------CHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC----------------CHHHHHH
Confidence 57888888888888888776665544333322222 2233333333322211111 1224455
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc---
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA--- 200 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~--- 200 (467)
.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..|+++++.+|++... +..++.+|...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI-TAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHhhcc
Confidence 55555555555555555555555555555555555555555555555555555555555555443 25555555555
Q ss_pred CChHHHHHHHhccccC
Q 012265 201 NHPFIAAESLAKIPDI 216 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~ 216 (467)
|++++|+..|+++++.
T Consensus 142 g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQ 157 (568)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc
Confidence 5555555555555543
No 100
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.28 E-value=2.3e-11 Score=105.27 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=93.7
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
..+++++..+|++..+++..|.++...|++++|+..|++++..+|++...+ +.+|.+|...|++++|+..|++++.+.+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-LGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 346667778888888888888888889999999999999999999887754 8889999999999999999999887765
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
++.++..++.+|..+|++++|+..|++++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67788888999999999999999999988764
No 101
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.28 E-value=3e-11 Score=115.46 Aligned_cols=206 Identities=14% Similarity=0.034 Sum_probs=148.5
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCC-ChhHHHHhhh-------hhhhhhhhHHHHHH
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPK-DVNDSLKKLD-------RIKEKDMQNFQLAR 106 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~-~~~~a~~~l~-------~~~~~~~~~~~~~~ 106 (467)
+-.|.-+ .-++.++|...|.+++..+|+....++ ++++.++.. .+...+.+.. +..+..|......-
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~----g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWI----GRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHH----HHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHH----hHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 4455555 589999999999999999999888775 222222211 1111111111 11111111111000
Q ss_pred H-------hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265 107 V-------LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFA 179 (467)
Q Consensus 107 ~-------l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l 179 (467)
. +...+ .++..+.+..+.++...|++++|.+.|+.+....|++. +.+..+.++.+.++|++|+..|+...
T Consensus 86 ~~~g~y~~~~~~v--~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 86 AIGGLYGDITYPV--TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp ECCTTTCCCEEEC--SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred ccCCccccccccc--CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 0 11122 24567888899999999999999999999999999888 88899999999999999999998775
Q ss_pred HhCCCc--HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 180 EKLPDK--SKIILLARAQVAAAANHPFIAAESLAKIPDIQH----MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 180 ~~~P~~--~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
.. |+. ...+++.|+.++...|++++|+..|++++.... .+.....++.++.++|+.++|..+|++++..
T Consensus 163 ~~-~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 163 KW-PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp GC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cc-CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 53 322 233579999999999999999999999975432 3446778999999999999999999999874
No 102
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.26 E-value=1.6e-10 Score=103.63 Aligned_cols=161 Identities=12% Similarity=0.102 Sum_probs=121.6
Q ss_pred HHHcCCHHHHHHHHHhccccCC-CCchHHHHHHHHHHhcCChhHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHc
Q 012265 128 LLHANKMDQARELVAALPDMFP-DSVMPLLLQAAVLVRENKAGKAEELLGQFAEK------LPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 128 ~l~~~~~~~A~~~~~~l~~~~P-~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~------~P~~~~~~~l~Laql~~~~ 200 (467)
++..|++++|.+.++.+.. +| ....++...+.++...|++++|+..+++++.. .|... .++..+|.+|...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH-RALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHc
Confidence 3567899999995544443 44 44556778888999999999999999999883 22223 3458899999999
Q ss_pred CChHHHHHHHhccccC---CC-Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 012265 201 NHPFIAAESLAKIPDI---QH-MP----ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKL 272 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~---~~-~p----~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l 272 (467)
|++++|+..+++++++ .. .+ .++..++.+|...|++++|+..+++++...+... +.......+..+|.++.
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 9999999999999764 11 22 3466789999999999999999999998765432 22223344567899999
Q ss_pred HCCChhHHHHHHHHHHHhc
Q 012265 273 RHGREEDASHLFEELVKTH 291 (467)
Q Consensus 273 ~~g~~~~A~~~le~ll~~~ 291 (467)
..|++++|...|++++...
T Consensus 159 ~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.26 E-value=1.5e-10 Score=100.18 Aligned_cols=133 Identities=11% Similarity=-0.056 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
...+++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+.+++..+|++... ++.+|.+|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG-YYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH-HHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999875 48999999
Q ss_pred HHcCChHHHHHHHhccccCCC-ChhHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MPATV--ATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~--~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
...|++++|+..|+++++..+ ++.++ ..++..+...|++++|+..+.++...+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 999999999999999987654 55555 3345558888999999999998876653
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.25 E-value=6.5e-11 Score=103.05 Aligned_cols=105 Identities=10% Similarity=-0.013 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
+....+++.+.+++..|++++|+..|++++..+|++..++...|.++...|++++|+..|++++..+|+++.. ++.+|.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~-~~~lg~ 112 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP-VFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH-HHHHHH
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999876 599999
Q ss_pred HHHHcCChHHHHHHHhccccCCCChh
Q 012265 196 VAAAANHPFIAAESLAKIPDIQHMPA 221 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~~~~p~ 221 (467)
+|...|++++|+..|++++.+.+++.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999998766554
No 105
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=6.4e-11 Score=101.23 Aligned_cols=112 Identities=15% Similarity=0.044 Sum_probs=95.5
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 139 ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 139 ~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
..+++++..+|++...++..|..+...|++++|+..|++++..+|++...+ +.+|.+|...|++++|+..|++++.+.+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 467788888898888888888889999999999999999999999988754 8899999999999999999999988765
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 219 -MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 219 -~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
++.++..++.+|..+|++++|+..|++++...+
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777888899999999999999999999988754
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=5.6e-10 Score=107.43 Aligned_cols=170 Identities=8% Similarity=-0.041 Sum_probs=133.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH------HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-----HH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMP------LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-----II 189 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~------~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-----~~ 189 (467)
..+.+..++..|++++|...+++++...+.+... ....+.++...+++++|+..+++++...+.... .+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3456778899999999999999998877765542 113566667788999999999999986443211 13
Q ss_pred HHHHHHHHHHcCChHHHHHHHhcccc----C-CC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPD----I-QH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS 261 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~----~-~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~ 261 (467)
...+|.+|...|++++|+..|+++++ . .. ...++..++.+|..+|++++|+.++++++...+... ......
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-cHHHHH
Confidence 57899999999999999999999983 2 11 223567899999999999999999999998875532 223445
Q ss_pred HHHHHHHHHHHHCCC-hhHHHHHHHHHHHhc
Q 012265 262 VIMQEAASFKLRHGR-EEDASHLFEELVKTH 291 (467)
Q Consensus 262 ~ll~~la~~~l~~g~-~~~A~~~le~ll~~~ 291 (467)
.++..+|.++...|+ +++|...|++++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 678889999999995 699999999999754
No 107
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.23 E-value=7.7e-10 Score=106.43 Aligned_cols=171 Identities=9% Similarity=-0.040 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch------HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVM------PLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-----SKI 188 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~------~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~ 188 (467)
...+.+..++..|++++|.+.+...+...|.... .....+.++...|++++|+..+++++...+.. ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3456788899999999999999988887776432 23345666778899999999999999765432 122
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccC---CC-Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDI---QH-MP----ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL 260 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~-~p----~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 260 (467)
++..+|.+|..+|++++|+..|++++++ .+ .+ .++..++.+|..+|++++|+.++++++...... ......
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CcHHHH
Confidence 4578999999999999999999999842 11 22 467789999999999999999999999876432 222334
Q ss_pred HHHHHHHHHHHHHCCChhHH-HHHHHHHHHhc
Q 012265 261 SVIMQEAASFKLRHGREEDA-SHLFEELVKTH 291 (467)
Q Consensus 261 ~~ll~~la~~~l~~g~~~~A-~~~le~ll~~~ 291 (467)
..++..+|.++...|++++| ...|++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 56677899999999999999 88899998764
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=4.5e-10 Score=108.65 Aligned_cols=187 Identities=16% Similarity=0.117 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCC--CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-----CcHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFP--DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP-----DKSKIILLA 192 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P--~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P-----~~~~~~~l~ 192 (467)
..+..+.++...|++++|.+++.+.+...| ++..+..+.+.++++.|+.+.|.+.++++.+.+| ++...+.+.
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 346788999999999999999999988887 7888899999999999999999999999999998 344434344
Q ss_pred HHHHHHHcC--ChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC---CchHHHHHHHH
Q 012265 193 RAQVAAAAN--HPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE---DNKLSVIMQEA 267 (467)
Q Consensus 193 Laql~~~~g--~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~---~~~~~~ll~~l 267 (467)
-+.+.+.+| ++.+|..+|+.+.+..+.......|..+++++|++++|...|+.++..++..... ++....++..+
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 455577677 9999999999987644331122223338999999999999999877665431000 12223456566
Q ss_pred HHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 012265 268 ASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVD 308 (467)
Q Consensus 268 a~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d 308 (467)
+.+....|+ +|.++++++.+.+|+...+..+..-...||
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd 300 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFD 300 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 777777887 899999999999998655555544434443
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=9.4e-10 Score=106.93 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=171.7
Q ss_pred HHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHH
Q 012265 41 QQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAI 120 (467)
Q Consensus 41 ~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l 120 (467)
.......++|+.++..+|..+|++..+...-..-+..+.. ....+++..+..+....|.+ -.+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-~~~~eeL~~~~~~L~~nPk~----------------y~a 105 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN-RNLYDELDWCEEIALDNEKN----------------YQI 105 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-SCHHHHHHHHHHHHHHCTTC----------------CHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHHCccc----------------HHH
Confidence 3445556799999999999999998887644333333321 35566666665544333221 135
Q ss_pred HHHHHHHH----HHc---CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh--HHHHHHHHHHHhCCCcHHHHHH
Q 012265 121 YANRVLLL----LHA---NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG--KAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 121 ~~n~all~----l~~---~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~--~A~~~l~~~l~~~P~~~~~~~l 191 (467)
..++..++ ... +.++++...++.++..+|.+..++...+-++...+.++ +++..+.++++.+|.+..++ .
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW-~ 184 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW-S 184 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH-H
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH-H
Confidence 55666655 444 78999999999999999999999999998888899998 99999999999999998765 6
Q ss_pred HHHHHHHHcCC------hHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhccCCchHHHH
Q 012265 192 ARAQVAAAANH------PFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDG-AAAVLDSAIKWWLNAMTEDNKLSVI 263 (467)
Q Consensus 192 ~Laql~~~~g~------~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~-A~~~l~~al~~~~~~~~~~~~~~~l 263 (467)
..+.++...|+ +++++..+.+++..++ +...+..+..++...|+..+ +..++.+++... . .+.....+
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~---~~~~s~~a 260 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-K---DQVTSSFA 260 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-G---TEESCHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-C---CCCCCHHH
Confidence 77888888787 9999999999998765 77788889999999998655 444555544321 0 01112224
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHH-hcCC
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVK-THGS 293 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~-~~pd 293 (467)
+..++.++...|+.++|+++|+.+.. .+|-
T Consensus 261 l~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 261 LETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 55579999999999999999999997 5675
No 110
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.21 E-value=2.4e-10 Score=95.97 Aligned_cols=110 Identities=9% Similarity=-0.031 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
..||..+..+|+|++|+..|++++++++ ++.++..++.+|..+|++++|+..+++++...+........+..++..+|.
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 5678888888888888888888887665 566777788888888888888888888888765543322334446777899
Q ss_pred HHHHCCChhHHHHHHHHHHHhcCCHHHHHHH
Q 012265 270 FKLRHGREEDASHLFEELVKTHGSIEALVGL 300 (467)
Q Consensus 270 ~~l~~g~~~~A~~~le~ll~~~pd~~ala~L 300 (467)
++...|++++|+..|++++..+|+.+.+..|
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 9999999999999999999999887655443
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.20 E-value=1e-10 Score=111.80 Aligned_cols=190 Identities=16% Similarity=0.045 Sum_probs=143.2
Q ss_pred CCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHhccccCCCCc-
Q 012265 81 PKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANR-------VLLLLHANKMDQARELVAALPDMFPDSV- 152 (467)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~-------all~l~~~~~~~A~~~~~~l~~~~P~~~- 152 (467)
..+...+...|.++...+|. ....++++ ..++...++..++.-.+...+...|+..
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~----------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES----------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred CCCHHHHHHHHHHHHHhChh----------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 35566666666665443322 12345566 5666666666777777776666555432
Q ss_pred --------------------hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhc
Q 012265 153 --------------------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAK 212 (467)
Q Consensus 153 --------------------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~ 212 (467)
.+.+..|.++...|++++|..+|..++...|++. +++.++.++++.|++++|+..|+.
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL--VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH--HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2345578889999999999999999999999886 459999999999999999999998
Q ss_pred cccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265 213 IPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNK-LSVIMQEAASFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 213 ~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~-~~~ll~~la~~~l~~g~~~~A~~~le~ll 288 (467)
+..... ...+...++.++..+|++++|+..|++++. .+.++. ....+...|.++..+|+.++|..+|++++
T Consensus 161 a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 876431 124678899999999999999999999873 111122 34456668999999999999999999999
Q ss_pred HhcCC
Q 012265 289 KTHGS 293 (467)
Q Consensus 289 ~~~pd 293 (467)
..+|+
T Consensus 236 a~~P~ 240 (282)
T 4f3v_A 236 TTHPE 240 (282)
T ss_dssp HHSCC
T ss_pred hcCCc
Confidence 99998
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.20 E-value=1.9e-09 Score=103.66 Aligned_cols=174 Identities=9% Similarity=-0.069 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
.....++..+..+|++++|...|.+++...+.......
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~------------------------------------------ 113 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ------------------------------------------ 113 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH------------------------------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH------------------------------------------
Confidence 34567889999999999999999988876553211100
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC------chHHHHHHHHHHhcCChhHHHHHHHHHH---HhC
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS------VMPLLLQAAVLVRENKAGKAEELLGQFA---EKL 182 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l---~~~ 182 (467)
....+++.+.++...|++++|...+++++...+.. ..++...|.++...|++++|+..+++++ ...
T Consensus 114 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~ 188 (293)
T 2qfc_A 114 -----FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp -----HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 01134556788888999999999999887655433 2245577888999999999999999998 566
Q ss_pred CCcHH---HHHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Q 012265 183 PDKSK---IILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVATLVALKERAGDIDGA-AAVLDSAIKWWL 251 (467)
Q Consensus 183 P~~~~---~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~l~~ly~~~g~~~~A-~~~l~~al~~~~ 251 (467)
|++.. .+++.+|.+|..+|++++|+..+++++++.. ...++..++.+|..+|++++| ...|++|+..++
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 66431 2458899999999999999999999975421 144677899999999999999 788999988765
Q ss_pred H
Q 012265 252 N 252 (467)
Q Consensus 252 ~ 252 (467)
.
T Consensus 269 ~ 269 (293)
T 2qfc_A 269 I 269 (293)
T ss_dssp H
T ss_pred H
Confidence 4
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=1.5e-10 Score=102.33 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=91.8
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCCH--HH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL-KERAGDI--DG 238 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~~--~~ 238 (467)
...|++++|+..+++++..+|++...+ +.+|.+|...|++++|+..|++++.+.+ ++.++..++.+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQW-ALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356788888888888888888887654 7888888888888888888888876654 56677777877 7788887 88
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
|+..|++++... +. ...++..+|.++...|++++|...|++++..+|+
T Consensus 100 A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 100 TRAMIDKALALD----SN---EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHC----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHhC----CC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 888888888752 11 1234566788888888888888888888888875
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=2e-10 Score=95.49 Aligned_cols=98 Identities=14% Similarity=0.012 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+..++..|++++|+..+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA-YIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHH
Confidence 4567888888999999999999999998899988888888888889999999999999999999988765 488899999
Q ss_pred HcCChHHHHHHHhccccCC
Q 012265 199 AANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~ 217 (467)
..|++++|+..|++++++.
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999998888655
No 115
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=3.8e-10 Score=92.89 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 196 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql 196 (467)
....++..+.+++..|+++.|...+++++..+|++..++...|.++...|++++|+..+.+++..+|++... ++.+|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA-YGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH-HHHHHHH
Confidence 345678899999999999999999999999999999888899999999999999999999999999998765 4899999
Q ss_pred HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265 197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI 236 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~ 236 (467)
|...|++++|+..|++++...+ ++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999987665 667788888999888875
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=7.6e-10 Score=100.34 Aligned_cols=127 Identities=10% Similarity=0.003 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+.+++..|++++|+..+++++ .| +..++...|.++...|++++|+..|++++..+|++... ++.+|.+|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA-YFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH-HHHHHHHHH
Confidence 357889999999999999999999986 33 56678889999999999999999999999999999875 489999999
Q ss_pred HcCChHHHHHHHhccccCCC-Ch----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 199 AANHPFIAAESLAKIPDIQH-MP----------------ATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p----------------~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
..|++++|+..|+++++..+ ++ .++..++.+|..+|++++|+..|++++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999987432 22 67888999999999999999999999875
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.18 E-value=3.4e-10 Score=111.69 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---------------chHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDS---------------VMPLLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---------------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
...++++.+.+++..|++++|+..+++++..+|++ ..+++..|.++...|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44678899999999999999999999999999998 477888999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH
Q 012265 182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGA-AAVLDSAIKWW 250 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A-~~~l~~al~~~ 250 (467)
+|++...+ +.+|.+|...|++++|+..|++++++.+ ++.++..++.++..+|++++| ...+.+++..+
T Consensus 226 ~p~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 226 DSNNEKGL-SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998764 9999999999999999999999998775 677888999999999999988 45667666544
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.18 E-value=2.6e-11 Score=119.68 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---------------HHHHHHHHHHH
Q 012265 132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---------------SKIILLARAQV 196 (467)
Q Consensus 132 ~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---------------~~~~~l~Laql 196 (467)
+.+++|...++......|++..++...|.++...|++++|+..|++++...|++ .. +++.+|.+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~-~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA-SHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH-HHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH-HHHHHHHH
Confidence 345556666666666677777888889999999999999999999999999998 34 45899999
Q ss_pred HHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265 197 AAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 275 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g 275 (467)
|...|++++|+..|++++++.+ ++.++..++.+|..+|++++|+..|++++... | ....++..++.++...|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P---~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----P---NNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----S---SCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----C---CCHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 67788899999999999999999999999762 2 22345667899999999
Q ss_pred ChhHH-HHHHHHHHHh
Q 012265 276 REEDA-SHLFEELVKT 290 (467)
Q Consensus 276 ~~~~A-~~~le~ll~~ 290 (467)
++++| ..+|+.++..
T Consensus 279 ~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 279 RQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99988 5677777754
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.17 E-value=4e-09 Score=102.52 Aligned_cols=225 Identities=10% Similarity=0.040 Sum_probs=170.5
Q ss_pred HHHHHhhhhhcCCCCChhh---------HHhhhhhHHHHHHHHHHHhC--ChHHHHHHHHHHhccCCCchHHHHHHHhhh
Q 012265 7 IFVRIGQETLTDDNFAEDD---------IEIELAPIAVQLAYVQQLLG--NTQEAFGAYTDIIKRNLADESSFAVAVNNL 75 (467)
Q Consensus 7 ~A~~~~~~~l~~~~~~~ee---------~~~El~~i~~qlA~v~~~~G--~~~eA~~~y~~~l~~~p~d~~~~~va~nnl 75 (467)
.+...++..+...+++++- +.++...+|...+.++...| ++++++..+..++..+|.+..+..--..-+
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3344444444445554432 44567788999999999999 999999999999999999888765221111
Q ss_pred ----hhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHhccccCC
Q 012265 76 ----VALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMD--QARELVAALPDMFP 149 (467)
Q Consensus 76 ----~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~--~A~~~~~~l~~~~P 149 (467)
..+....+..+.+..+..+...+|. .-.+..+++.+.-..|.++ ++.+.+++++..+|
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk----------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPK----------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 1121113455555555544333322 1246788888888889988 99999999999999
Q ss_pred CCchHHHHHHHHHHhcCC------hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHH-HHHHHhccccCC----C
Q 012265 150 DSVMPLLLQAAVLVRENK------AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFI-AAESLAKIPDIQ----H 218 (467)
Q Consensus 150 ~~~~~~ll~a~l~~~~~~------~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~-A~~~L~~~~~~~----~ 218 (467)
.+..++...+.++...+. +++++..+.+++..+|++..++ ..+..++...|+..+ .....+++++++ .
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW-~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW-NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH-HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH-HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 999999998888887777 8999999999999999998765 778889999998555 555777777654 2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 219 MPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
++.++..++.+|.+.|+.++|+.+++.+..
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 677888999999999999999999999886
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.17 E-value=3.3e-10 Score=93.98 Aligned_cols=117 Identities=12% Similarity=-0.051 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
...+++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG-YTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH-HHHHHHHH
Confidence 35678899999999999999999999999999999988999999999999999999999999999998775 48999999
Q ss_pred HHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCC
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGD 235 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~ 235 (467)
...|++++|+..|++++...+ ++.++..++.+|..+|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999987654 56677788888877664
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.17 E-value=1.8e-10 Score=98.33 Aligned_cols=104 Identities=13% Similarity=-0.063 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV 196 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql 196 (467)
....+++.+.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|++++..+|++... ++.+|.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF-PFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999999999875 4899999
Q ss_pred HHHcCChHHHHHHHhccccCCC-Chh
Q 012265 197 AAAANHPFIAAESLAKIPDIQH-MPA 221 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~~~~~~-~p~ 221 (467)
|...|++++|+..|++++++.+ +|.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999987653 443
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.15 E-value=2.1e-10 Score=99.18 Aligned_cols=106 Identities=10% Similarity=-0.080 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 116 QREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 116 q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
.....+++.+.+++..|++++|+..++.++..+|++..++...|.++...|++++|+..|++++..+|++... ++.+|.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~lg~ 97 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF-PFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-HHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH-HHHHHH
Confidence 3445788999999999999999999999999999999999999999999999999999999999999999875 489999
Q ss_pred HHHHcCChHHHHHHHhccccCCC-ChhH
Q 012265 196 VAAAANHPFIAAESLAKIPDIQH-MPAT 222 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~ 222 (467)
+|...|++++|+..|++++++.+ +|..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999987654 4443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.14 E-value=1.5e-10 Score=102.19 Aligned_cols=120 Identities=9% Similarity=0.005 Sum_probs=105.8
Q ss_pred HHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHcCCh--HH
Q 012265 129 LHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQV-AAAANHP--FI 205 (467)
Q Consensus 129 l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql-~~~~g~~--~~ 205 (467)
+..|++++|...++.++..+|++..++...|.++...|++++|+..|++++..+|++... ++.+|.+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL-YAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH-HHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhcCCcchHH
Confidence 456789999999999999999999999999999999999999999999999999999775 4889999 8899999 99
Q ss_pred HHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 206 AAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 206 A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
|+..|++++...+ ++.++..++.+|...|++++|+..|++++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999998765 6778889999999999999999999999875
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.13 E-value=1.5e-09 Score=93.80 Aligned_cols=131 Identities=13% Similarity=-0.001 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHH
Q 012265 154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKER 232 (467)
Q Consensus 154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~ 232 (467)
.+...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+ ++.++..++.+|..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45677888899999999999999999999998775 48999999999999999999999987665 67788899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 233 AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 233 ~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
+|++++|+..|++++... +.+... ......+..+...|++++|+..|+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~----p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK----PHDKDA-KMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS----TTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC----CCCHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999998763 222222 12234566688889999999999887654
No 125
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.12 E-value=5.4e-09 Score=107.30 Aligned_cols=248 Identities=10% Similarity=-0.008 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHHhC----ChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHH
Q 012265 31 APIAVQLAYVQQLLG----NTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLAR 106 (467)
Q Consensus 31 ~~i~~qlA~v~~~~G----~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 106 (467)
...++.+|.+|...| ..++|..+++.+...+|. ....++.-+...+...+...++..+.+.....+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------ 211 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------ 211 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------
Confidence 456677888888888 444455556555555443 3332222222222122556666666544322110
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHhccccCCCCchHHHHHHHH-H--HhcCChhHHHHHHHHHH
Q 012265 107 VLDLRLSPKQREAIYANRVLLLLHA----NKMDQARELVAALPDMFPDSVMPLLLQAAV-L--VRENKAGKAEELLGQFA 179 (467)
Q Consensus 107 ~l~~kL~~~q~~~l~~n~all~l~~----~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l-~--~~~~~~~~A~~~l~~~l 179 (467)
....+++.+.++... +++++|...++++. |++..+.+..+.+ + ...+++++|+..|++++
T Consensus 212 ----------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 212 ----------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp ----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 112347888888665 68999999999987 8999999988887 4 46899999999999998
Q ss_pred HhCCCcHHHHHHHHHHHHHHcC-----ChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 012265 180 EKLPDKSKIILLARAQVAAAAN-----HPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 180 ~~~P~~~~~~~l~Laql~~~~g-----~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~ 250 (467)
+.. +... .+.||.+|. .| ++++|+.+|+++. ..++.....|+.+|.. ..++++|+.+|+++...
T Consensus 279 ~~g--~~~A-~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~- 351 (452)
T 3e4b_A 279 AAD--QPRA-ELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN- 351 (452)
T ss_dssp HTT--CHHH-HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-
T ss_pred HCC--CHHH-HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-
Confidence 754 5554 489999998 66 9999999999999 5577788889999877 34999999999998752
Q ss_pred HHhccCCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCC---hhHHHHHH
Q 012265 251 LNAMTEDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTHGSIEALVGLVTTSAHVD---VDKAESYE 316 (467)
Q Consensus 251 ~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d---~~kA~~l~ 316 (467)
++. .....+|.+|.. ..++.+|..+|+.+.... +..+...+........ ..+|..+.
T Consensus 352 -----g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~ 415 (452)
T 3e4b_A 352 -----GQN---SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLV 415 (452)
T ss_dssp -----TCT---THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -----ChH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 122 234557888865 358999999999999765 3334333333333333 34454444
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=1.1e-10 Score=112.17 Aligned_cols=98 Identities=11% Similarity=-0.066 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA-HFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999876 489999999
Q ss_pred HcCChHHHHHHHhccccCC
Q 012265 199 AANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~ 217 (467)
..|++++|+..|++++++.
T Consensus 84 ~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998654
No 127
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.12 E-value=1.1e-08 Score=114.84 Aligned_cols=237 Identities=10% Similarity=0.060 Sum_probs=158.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHH
Q 012265 37 LAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQ 116 (467)
Q Consensus 37 lA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q 116 (467)
.|.++..+|.++||..+|+++. ...+....++ .+ + .+...+...+.+ . .
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLi--e~---i---~nldrAiE~Aer------------------v---n 1103 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--VNTSAVQVLI--EH---I---GNLDRAYEFAER------------------C---N 1103 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHH--HH---H---hhHHHHHHHHHh------------------c---C
Confidence 5889999999999999999974 1212111111 01 1 122223222221 1 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----------
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK----------- 185 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~----------- 185 (467)
...++++.|..++..|++++|+..|.+. ++...+.-.+..+.+.|++++|++.|..+.+..++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 2357888899999999999999998764 555666667777888888888888886655443221
Q ss_pred ----------------HHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 186 ----------------SKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 186 ----------------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
...+ +.+|+.+...|+|++|...|.++ ..+..++.+|.++|++++|++.+++|...
T Consensus 1179 Kl~rleele~fI~~~n~ad~-~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1179 KTNRLAELEEFINGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred hhcCHHHHHHHHhCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 1222 56777888888888888888875 35778889999999999999998876432
Q ss_pred --HHHhc--------------cC--CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccCChh
Q 012265 250 --WLNAM--------------TE--DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVD 310 (467)
Q Consensus 250 --~~~~~--------------~~--~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d~~ 310 (467)
|.+.. -. -......+.+++.+|...|.+++|+.+|+.++..++. ....-.|..+|+...++
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 21100 00 0001123456788999999999999999999998854 34455577788888887
Q ss_pred HHHHHHh
Q 012265 311 KAESYEK 317 (467)
Q Consensus 311 kA~~l~~ 317 (467)
+..+.++
T Consensus 1331 klmEhlk 1337 (1630)
T 1xi4_A 1331 KMREHLE 1337 (1630)
T ss_pred HHHHHHH
Confidence 7655443
No 128
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3e-09 Score=107.34 Aligned_cols=223 Identities=9% Similarity=-0.032 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
..++.|.-+...|++++|++.|..+++..+....... .. ........
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--------~~--~~~~~~~~----------------------- 52 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--------GA--SVDDKRRN----------------------- 52 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--------SS--SBCSHHHH-----------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHH--------HH--HHHHHHhh-----------------------
Confidence 4678899999999999999999999998875432111 00 00011111
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchH------HHHHHHHHHhcCChhHHHHHHHHHHHhCCC--
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMP------LLLQAAVLVRENKAGKAEELLGQFAEKLPD-- 184 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~------~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~-- 184 (467)
....+..+.+.+|...|++++|.+.+..++...+..... ....+.++...|++++|+.+++.++...+.
T Consensus 53 ---~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (434)
T 4b4t_Q 53 ---EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK 129 (434)
T ss_dssp ---HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred ---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 112346788999999999999999999988766554332 123344455689999999999998865321
Q ss_pred ---cHHHHHHHHHHHHHHcCChHHHHHHHhccccC----CCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012265 185 ---KSKIILLARAQVAAAANHPFIAAESLAKIPDI----QHM---PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM 254 (467)
Q Consensus 185 ---~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~~---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~ 254 (467)
....+...||.+|...|+|++|+..|+.+... +.. ..++..++.+|...|++++|..++++++.......
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 11124578999999999999999999988631 222 34567889999999999999999999998765533
Q ss_pred cCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 255 TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 255 ~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+......++...|.++...|++++|...|.+++...
T Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2112233455667888889999999999999998764
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.11 E-value=1.1e-09 Score=89.35 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+.++...|++++|...+++++..+|++..++...+.++...|++++|+..+++++...|++... ++.++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-WYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH-HHHHHHHHH
Confidence 4677888999999999999999999999999988888888889999999999999999999999988765 488999999
Q ss_pred HcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC
Q 012265 199 AANHPFIAAESLAKIPDIQH-MPATVATLVALKERAG 234 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g 234 (467)
..|++++|+..|+++++..+ .+.+...++.++..+|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999887654 5666777777776554
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.6e-09 Score=89.94 Aligned_cols=100 Identities=12% Similarity=0.001 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265 152 VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALK 230 (467)
Q Consensus 152 ~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly 230 (467)
...+...|..+...|++++|+..|.+++..+|++... ++.+|.+|...|++++|+..|++++.+++ ++..+..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4456778889999999999999999999999999875 48999999999999999999999998765 677888999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHH
Q 012265 231 ERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 231 ~~~g~~~~A~~~l~~al~~~~~ 252 (467)
..+|++++|+..|++++...+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999987643
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=6.3e-10 Score=108.01 Aligned_cols=172 Identities=14% Similarity=0.084 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD 109 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 109 (467)
-.....+.+.+|..+|++++|+..|.+++...+. + .+.
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~--------------~---~~~------------------------- 72 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN--------------N---RSL------------------------- 72 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------T---TCH-------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------c---CCH-------------------------
Confidence 4455666778888888888888888877664210 0 000
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC--c----hHHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265 110 LRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS--V----MPLLLQAAVLVRENKAGKAEELLGQFAEKLP 183 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~--~----~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P 183 (467)
.....++.|.+.++...|++++|+..+++++..++.. . .++...|.++.. |++++|+..|++++..+|
T Consensus 73 -----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 73 -----FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 0112345677888888999999999999887665432 1 234456677777 999999999999998776
Q ss_pred Cc-----HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC----C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 184 DK-----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH----M---PATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 184 ~~-----~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~----~---p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
.. ...++..+|.+|..+|++++|+..|++++.+.. . ...+..++.+|..+|++++|+..|++++ ..
T Consensus 147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 147 NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 42 123457889999999999999999999986421 1 1245667888999999999999999998 54
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.2e-09 Score=105.64 Aligned_cols=174 Identities=14% Similarity=0.055 Sum_probs=127.8
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 137 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLP--DKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P--~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
|+..+++++...+.+....++.|.++...|++++|+++|.+.+...| ++... ...++++|+..|+.+.|...|+++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea-~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTEL-LLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78889988877656666678999999999999999999999999887 66654 5889999999999999999999987
Q ss_pred cCCC-----ChhHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHH
Q 012265 215 DIQH-----MPATVATL--VALKERAG--DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFE 285 (467)
Q Consensus 215 ~~~~-----~p~~~~~l--~~ly~~~g--~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le 285 (467)
+.++ .-.++..| +.+.+..| ++.+|..+|+++...+ ++ .....++. . +++.+|++++|...++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p~-~~~~~lLl--n-~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----PT-WKTQLGLL--N-LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----CS-HHHHHHHH--H-HHHHHTCHHHHHHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----CC-cccHHHHH--H-HHHHcCCHHHHHHHHH
Confidence 6544 12344344 44455556 9999999999986532 11 01111232 3 7899999999999999
Q ss_pred HHHHh----------cCC-HHHHHHHHHHhccCChhHHHHHHhcCC
Q 012265 286 ELVKT----------HGS-IEALVGLVTTSAHVDVDKAESYEKRLK 320 (467)
Q Consensus 286 ~ll~~----------~pd-~~ala~Lv~a~~~~d~~kA~~l~~~L~ 320 (467)
.+++. +|+ .+++++++.+.....- .|.+|+.+|.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~ 280 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLV 280 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHH
Confidence 88876 354 6888887655433332 5666765543
No 133
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.10 E-value=6.6e-10 Score=97.06 Aligned_cols=103 Identities=15% Similarity=-0.027 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
...+++.+.+++..|++++|+..+++++..+|++..++...+.++...|++++|+..|++++..+|++... ++.+|.+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA-WSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999875 48999999
Q ss_pred HHcCChHHHHHHHhccccCCC-Chh
Q 012265 198 AAANHPFIAAESLAKIPDIQH-MPA 221 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~-~p~ 221 (467)
...|++++|+..|++++++.+ ++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 999999999999999987654 444
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.10 E-value=3.3e-10 Score=94.33 Aligned_cols=97 Identities=16% Similarity=0.010 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
.++.+..++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV-HAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHc
Confidence 46778888888888888888888888888888888888888888888888888888888888888765 47888888888
Q ss_pred CChHHHHHHHhccccCCC
Q 012265 201 NHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 201 g~~~~A~~~L~~~~~~~~ 218 (467)
|++++|+..|++++...+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 888888888888876543
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.10 E-value=4.7e-10 Score=94.21 Aligned_cols=108 Identities=11% Similarity=0.019 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH------HHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK------IILL 191 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~------~~~l 191 (467)
...+.|.+..++..|++++|+..+++++..+|++..++...|.++...|++++|+..++++++..|++.. .+++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456778888888888888888888888888888888778888888888888888888888877665421 1335
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCChhHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVAT 225 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~ 225 (467)
.+|.+|...|++++|+..|++++...++|.++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 6677777777777777777777665556655433
No 136
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.09 E-value=1.5e-09 Score=90.10 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCc---hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSV---MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---SKIILLARA 194 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~---~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---~~~~~l~La 194 (467)
.++.+..++..|++++|...++.++..+|++. .+++..|.++...|++++|+..|++++..+|++ ... ++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG-LLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH-HHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH-HHHHH
Confidence 56788888899999999999999888888887 577788888888999999999999999988887 554 47888
Q ss_pred HHHHHcCChHHHHHHHhccccCCC
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
.+|...|++++|+..|++++...+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC
Confidence 899999999999999888876544
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=2e-09 Score=86.84 Aligned_cols=110 Identities=15% Similarity=0.015 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+.+++..|++++|...++.++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG-YSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHH-HHHHHHHHH
Confidence 4577889999999999999999999999999999988899999999999999999999999999998775 488999999
Q ss_pred HcCChHHHHHHHhccccCCC-ChhHHHHHHHH
Q 012265 199 AANHPFIAAESLAKIPDIQH-MPATVATLVAL 229 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l 229 (467)
..|++++|+..|+++++..+ ++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999988765 55555555544
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=4.3e-09 Score=96.40 Aligned_cols=159 Identities=13% Similarity=-0.011 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC----ChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVREN----KAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~----~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
..+++.+.++...+++++|...++++.. .++..+....+.++.. + ++++|+..|+++++. ++... .+.|+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a-~~~Lg 92 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSG-EIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHH-HHHHH
Confidence 4688999999999999999999999875 4677888888888877 6 899999999999764 56655 48999
Q ss_pred HHHHH----cCChHHHHHHHhccccCCCC---hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 012265 195 QVAAA----ANHPFIAAESLAKIPDIQHM---PATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVI 263 (467)
Q Consensus 195 ql~~~----~g~~~~A~~~L~~~~~~~~~---p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~l 263 (467)
.+|.. .+++++|+.+|+++.+..+. +.....|+.+|.. .+++++|+.+|++++.. ++++ ..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~---~a 164 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-----SRTG---YA 164 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-----SCTT---HH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----CCCH---HH
Confidence 99998 89999999999999987663 7778899999999 88999999999999863 1112 13
Q ss_pred HHHHHHHHHHC-C-----ChhHHHHHHHHHHHhc
Q 012265 264 MQEAASFKLRH-G-----REEDASHLFEELVKTH 291 (467)
Q Consensus 264 l~~la~~~l~~-g-----~~~~A~~~le~ll~~~ 291 (467)
+..+|.+|... | ++++|..+|+++++..
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55689988764 4 8999999999999874
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.07 E-value=1.1e-09 Score=90.09 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=102.9
Q ss_pred CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH
Q 012265 148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL 226 (467)
Q Consensus 148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l 226 (467)
+|.+...++..|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+ ++.++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34455667788889999999999999999999999998765 48999999999999999999999987654 57788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChh
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREE 278 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~ 278 (467)
+.+|...|++++|+..|++++... +.+ ...+..+|.++...|+++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD----PDN---ETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS----TTC---HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC----ccc---hHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999763 222 234566788888888763
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=1.2e-09 Score=98.94 Aligned_cols=136 Identities=10% Similarity=-0.014 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 233 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~ 233 (467)
++..|.++...|++++|+..|++++ .| +.. +++.+|.+|...|++++|+..|++++...+ .+.++..++.+|..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR-ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 4567788899999999999999986 33 444 458999999999999999999999997654 677888999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhc---------cCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 234 GDIDGAAAVLDSAIKWWLNAM---------TEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~---------~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
|++++|+..|++++...+... ...+....++..+|.++...|++++|...|++++..+|+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999997542211 0012233567778999999999999999999999998864
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-09 Score=90.29 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=101.4
Q ss_pred CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH
Q 012265 148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL 226 (467)
Q Consensus 148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l 226 (467)
.|.+...+...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+ ++.++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL-YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHH-HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45566678889999999999999999999999999998775 48999999999999999999999987655 67788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCC
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGR 276 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~ 276 (467)
+.+|...|++++|+..|++++...+. ...++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-------CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-------GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHhcC
Confidence 99999999999999999999876321 12345557877776653
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=2.3e-09 Score=102.84 Aligned_cols=168 Identities=13% Similarity=0.009 Sum_probs=123.8
Q ss_pred CCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHH
Q 012265 149 PDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLV 227 (467)
Q Consensus 149 P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~ 227 (467)
|.+...+...|.++...|++++|+..|.+++..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556677888999999999999999999999999999875 48999999999999999999999998875 677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCC-chHHH-----------------------HHHHHHHHHHHCCChhHHHHH
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTED-NKLSV-----------------------IMQEAASFKLRHGREEDASHL 283 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~-~~~~~-----------------------ll~~la~~~l~~g~~~~A~~~ 283 (467)
.+|..+|++++|+..|++++...+.....- ..... +...++.+ ..|++++|++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~ 157 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEE 157 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHH
Confidence 999999999999999999998765432100 00000 11112222 36788999999
Q ss_pred HHHHHHhcCCHHHH-HHHHHHhcc--CChhHHHHHHhcC
Q 012265 284 FEELVKTHGSIEAL-VGLVTTSAH--VDVDKAESYEKRL 319 (467)
Q Consensus 284 le~ll~~~pd~~al-a~Lv~a~~~--~d~~kA~~l~~~L 319 (467)
|+++++.+|+...+ ..+...+.. ...+.+..+....
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988874332 222222222 2234566665543
No 143
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=2.4e-09 Score=98.12 Aligned_cols=170 Identities=15% Similarity=-0.004 Sum_probs=133.5
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC----ChHHHHHHHhc
Q 012265 137 ARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN----HPFIAAESLAK 212 (467)
Q Consensus 137 A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g----~~~~A~~~L~~ 212 (467)
|.+.++++... ++..+.+..+.++...+++++|+..|+++++. ++... ++.|+.+|.. + ++++|+.+|++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a-~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDA-LALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHH-HHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH-HHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 45556665543 77888899999999999999999999999885 45554 4899999998 7 99999999999
Q ss_pred cccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----CCChhHHHHHH
Q 012265 213 IPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGREEDASHLF 284 (467)
Q Consensus 213 ~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~l 284 (467)
+.+.. ++.....|+.+|.. .+++++|+.+|++++.. .........+..+|.+|.. .+++++|+.+|
T Consensus 79 A~~~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEAG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHTT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHCC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 97643 56677789999987 88999999999998853 1110223456778999999 88999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhcc-------CChhHHHHHHhc
Q 012265 285 EELVKTHGSIEALVGLVTTSAH-------VDVDKAESYEKR 318 (467)
Q Consensus 285 e~ll~~~pd~~ala~Lv~a~~~-------~d~~kA~~l~~~ 318 (467)
++++...++..+...|...|.. .|.++|..+.+.
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 9999885556677777777642 278888877643
No 144
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.05 E-value=2.6e-09 Score=93.03 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=104.9
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
+.+..+.++|..+...|++++|+..|.+++...+... ....+.+.. ...+.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~-----------~~~~~~~~~--~~~~~---------------- 59 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLI-----------LREKPGEPE--WVELD---------------- 59 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HTSCTTSHH--HHHHH----------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----------ccCCCCHHH--HHHHH----------------
Confidence 3567789999999999999999999999987632100 000111110 00110
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
+....+++|.+.+++..|++++|+..++.++..+|++..+++..|.++...|++++|+..|++++..+|++...
T Consensus 60 ------~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 60 ------RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp ------HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred ------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 12345789999999999999999999999999999999999999999999999999999999999999998744
Q ss_pred HHHHHHHHHHHc
Q 012265 189 ILLARAQVAAAA 200 (467)
Q Consensus 189 ~~l~Laql~~~~ 200 (467)
+...+..+....
T Consensus 134 ~~~~l~~~~~~~ 145 (162)
T 3rkv_A 134 VAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445566655443
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.05 E-value=1.8e-09 Score=97.41 Aligned_cols=122 Identities=11% Similarity=-0.032 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc----------------hHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSV----------------MPLLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~----------------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
...+++.+..++..|++++|+..+++++...|.+. .++...|.++...|++++|+..+++++..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34677899999999999999999999999999887 67778889999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHH
Q 012265 182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..++.++...++..++.
T Consensus 118 ~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 DKNNVKA-LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp STTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 48999999999999999999999998765 6777888888888887777665
No 146
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.02 E-value=6.6e-10 Score=112.22 Aligned_cols=243 Identities=14% Similarity=0.111 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
.+|.++|..+..+|++++|++.|.++ .|...+.-....... .+...++.+.+......
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~---~g~~EeAi~yl~~ark~-------------- 90 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT---SGNWEELVKYLQMARKK-------------- 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHh--------------
Confidence 48999999999999999999999653 344444322222222 23334444433221100
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
+ ....+....+.+|...|+++++.+.++. |+. ..+...|..+...|.|++|...|..+ + . +.
T Consensus 91 ~---~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~---n-~~ 152 (449)
T 1b89_A 91 A---RESYVETELIFALAKTNRLAELEEFING-----PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----S---N-FG 152 (449)
T ss_dssp ---------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-----T---C-HH
T ss_pred C---ccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh-----h---h-HH
Confidence 0 1124556677788889999997766643 433 46677788889999999999999876 1 2 26
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK 271 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~ 271 (467)
.||..+...|+|++|++.++++. ++.+|..++..+...|+++.|..+....+ .+ +. -+..++.+|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~-------ad---~l~~lv~~Y 217 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKAN----STRTWKEVCFACVDGKEFRLAQMCGLHIV-VH-------AD---ELEELINYY 217 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC-------HH---HHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHcC----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC-------Hh---hHHHHHHHH
Confidence 78999999999999999999984 68889899999999999999976665432 11 11 133478889
Q ss_pred HHCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHhccCChhHHHHHHhcCCCCCCCCCcChhhhh
Q 012265 272 LRHGREEDASHLFEELVKTHGS-IEALVGLVTTSAHVDVDKAESYEKRLKPLPGLNGVDVDSLE 334 (467)
Q Consensus 272 l~~g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~~d~~kA~~l~~~L~~~~~~~~vDvd~Le 334 (467)
...|++++|+.+|+.++..++. ...+..|..+|+...|++..+.++..- +.|++..+.
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~-----~~ini~k~~ 276 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW-----SRVNIPKVL 276 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS-----TTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHhcCcHHH
Confidence 9999999999999999998853 677888999999999999887766432 345555544
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=9.9e-09 Score=98.58 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=124.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHHHcCChHHHHHHHhccccCCC---C----hhHHHHH
Q 012265 159 AAVLVRENKAGKAEELLGQFAEKLPDKSKI-----ILLARAQVAAAANHPFIAAESLAKIPDIQH---M----PATVATL 226 (467)
Q Consensus 159 a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~-----~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~----p~~~~~l 226 (467)
+..++..|++++|+.++++++...+..... ++..++.+|...|++++|+..|++++++.. + ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 566788999999999999999987765442 223578889999999999999999986421 2 1257789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC---C----HHHHHH
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG---S----IEALVG 299 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p---d----~~ala~ 299 (467)
+.+|..+|++++|+.+|++++..+...+........++..+|.++...|++++|+..|++++...+ + ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 999999999999999999999887654333345555788899999999999999999999998762 1 355666
Q ss_pred HHHHhccCC-h-hHHHHHHh
Q 012265 300 LVTTSAHVD-V-DKAESYEK 317 (467)
Q Consensus 300 Lv~a~~~~d-~-~kA~~l~~ 317 (467)
+..++.... . ++|..+..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHH
Confidence 777775544 3 78876654
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=7.8e-09 Score=84.11 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=95.9
Q ss_pred CCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHH
Q 012265 148 FPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVAT 225 (467)
Q Consensus 148 ~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~ 225 (467)
+|.. ...+...+.++...|++++|+..+++++...|++... .+.++.+|...|++++|+..|++++...+ ++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4544 4566778888999999999999999999999998765 48999999999999999999999987654 6677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 275 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g 275 (467)
++.+|...|++++|+..|++++... +.+ ..++..++.++...|
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD----PNN---AEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC----CCc---HHHHHHHHHHHHhcc
Confidence 9999999999999999999998752 222 234555677665543
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.00 E-value=2.5e-09 Score=89.67 Aligned_cols=97 Identities=11% Similarity=-0.066 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAA 198 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~ 198 (467)
..+++.+.+++..|++++|...++.++..+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA-HFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH-HHHHHHHHH
Confidence 3566777777777777777777777777777777777777777777777777777777777777777654 367777777
Q ss_pred HcCChHHHHHHHhccccC
Q 012265 199 AANHPFIAAESLAKIPDI 216 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~ 216 (467)
..|++++|+..|++++++
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 777777777777777643
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.00 E-value=1.8e-09 Score=88.92 Aligned_cols=113 Identities=13% Similarity=-0.008 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-------HHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK-------SKIILL 191 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~-------~~~~~l 191 (467)
..+++.+.+++..|++++|...+++++..+|.+..++...|.++...|++++|+..+++++...|++ ... ++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA-YA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH-HH
Confidence 3566778888888888888888888888888887777778888888888888888888888877654 443 47
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER 232 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~ 232 (467)
.+|.+|...|++++|+..|+++++..+++.+...+..++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77888888888888888888877665556555555554443
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.99 E-value=2.6e-09 Score=93.19 Aligned_cols=102 Identities=18% Similarity=0.078 Sum_probs=92.0
Q ss_pred CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHH
Q 012265 148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATL 226 (467)
Q Consensus 148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l 226 (467)
.+.+...++..|.++...|++++|+..|++++..+|++... ++.+|.+|...|++++|+..|++++.+++ ++.++..+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY-LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34455667888999999999999999999999999999875 48999999999999999999999998765 67888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
+.+|..+|++++|+..|++++...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999875
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.99 E-value=3.9e-09 Score=89.94 Aligned_cols=133 Identities=10% Similarity=-0.108 Sum_probs=88.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-------ChhHHHH
Q 012265 158 QAAVLVRENKAGKAEELLGQFAEKLPDK-----SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-------MPATVAT 225 (467)
Q Consensus 158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~-----~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-------~p~~~~~ 225 (467)
.|.++...|++++|+..+++++...+.. ...+...+|.+|...|++++|+..+++++++.. ...++..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 3344444444444444444444432211 011346778888888888888888888764311 1234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
++.+|...|++++|+..+++++...+... ........+..+|.++...|++++|...|+++++..
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 88899999999999999999988765432 223334556678999999999999999999998764
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.98 E-value=4.6e-10 Score=101.30 Aligned_cols=145 Identities=10% Similarity=-0.037 Sum_probs=77.5
Q ss_pred HcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH---------------HHHHHHHH
Q 012265 130 HANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS---------------KIILLARA 194 (467)
Q Consensus 130 ~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~---------------~~~~l~La 194 (467)
..+.++.+.+.++......+.....+...|..+...|++++|+..|.+++...|++. ..+++.+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 344455554444433333333344455667777777888888888888887777654 12335566
Q ss_pred HHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR 273 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~ 273 (467)
.+|...|++++|+..+++++.+.+ ++.++..++.+|..+|++++|+..|++++... +.+ ..++..++.++..
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~---~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNN---LDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTC---HHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCc---HHHHHHHHHHHHH
Confidence 666666666666666666655443 44455556666666666666666666665542 111 1233344555555
Q ss_pred CCChhHHH
Q 012265 274 HGREEDAS 281 (467)
Q Consensus 274 ~g~~~~A~ 281 (467)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55554444
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.98 E-value=5.1e-08 Score=95.43 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=160.9
Q ss_pred HHhCChH-HHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCC-------hhHHHHhhhhhhhhhhhHHHHHHHhhcCCC
Q 012265 42 QLLGNTQ-EAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKD-------VNDSLKKLDRIKEKDMQNFQLARVLDLRLS 113 (467)
Q Consensus 42 ~~~G~~~-eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~-------~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~ 113 (467)
...|.++ +|+.++..++..+|++..+...-..-+..+..... ..+.+..+..+...+|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------------- 105 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------------- 105 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--------------
Confidence 4567666 89999999999999998876533222222221111 1222222222211111
Q ss_pred HHHHHHHHHHHHHHHHHcCC--HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC-hhHHHHHHHHHHHhCCCcHHHHH
Q 012265 114 PKQREAIYANRVLLLLHANK--MDQARELVAALPDMFPDSVMPLLLQAAVLVRENK-AGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 114 ~~q~~~l~~n~all~l~~~~--~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~-~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
..-.++.+++.++...+. ++++...++.++..+|.|..++...+.++...|. +++++..+.++++.+|.+..++
T Consensus 106 --Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW- 182 (331)
T 3dss_A 106 --KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW- 182 (331)
T ss_dssp --TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH-
T ss_pred --CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH-
Confidence 123578888888888884 8999999999999999999999999888888888 5899999999999999998765
Q ss_pred HHHHHHHHHc--------------CChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc-----------CCHHHHHHHHH
Q 012265 191 LARAQVAAAA--------------NHPFIAAESLAKIPDIQH-MPATVATLVALKERA-----------GDIDGAAAVLD 244 (467)
Q Consensus 191 l~Laql~~~~--------------g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~-----------g~~~~A~~~l~ 244 (467)
..++.++... +.+++++..+.+++...+ +..+|..+..++... +.+++++..+.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 6677777665 568899999999997765 667776666666554 34677777777
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHH---HCCChhHHHHHHHHHHHhcCCH
Q 012265 245 SAIKWWLNAMTEDNKLSVIMQEAASFKL---RHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 245 ~al~~~~~~~~~~~~~~~ll~~la~~~l---~~g~~~~A~~~le~ll~~~pd~ 294 (467)
++++.. | +....+..++.+.. ..|..++....|.++++.+|..
T Consensus 263 elle~~----p---d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 263 ELQELE----P---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHC----T---TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHhhC----c---ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 777652 1 22333433333221 3678889999999999999863
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.98 E-value=8.9e-09 Score=84.64 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAA 268 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la 268 (467)
++.+|.++...|++++|+..|++++...+ ++.++..++.+|...|++++|+.++++++...+...........++..+|
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 36778888888888888888888876543 56667778888888888888888888888776543211111234567789
Q ss_pred HHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012265 269 SFKLRHGREEDASHLFEELVKTHGSIEALVGLVTT 303 (467)
Q Consensus 269 ~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a 303 (467)
.++...|++++|...|++++...|+......+..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999998876555555443
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.97 E-value=2.2e-09 Score=89.31 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHH
Q 012265 154 PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKER 232 (467)
Q Consensus 154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~ 232 (467)
..+..|..+...|++++|+..|++++..+|++...+ +.+|.++...|++++|+..|++++++++ ++.++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAW-RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356778889999999999999999999999998764 8999999999999999999999998876 67888899999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 012265 233 AGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 233 ~g~~~~A~~~l~~al~~~ 250 (467)
.|++++|+..|++++...
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.97 E-value=8e-09 Score=86.49 Aligned_cols=105 Identities=18% Similarity=0.036 Sum_probs=94.0
Q ss_pred cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHH
Q 012265 147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVAT 225 (467)
Q Consensus 147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~ 225 (467)
..|.+...++..|.++...|++++|+..+.+++..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 356677788889999999999999999999999999999875 48999999999999999999999998765 6778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 226 LVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
++.+|...|++++|+..|++++...+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999988654
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.96 E-value=2.2e-09 Score=93.43 Aligned_cols=112 Identities=12% Similarity=0.012 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccc------------------CCCCchHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDM------------------FPDSVMPLLLQAAVLVRENKAGKAEELLGQFA 179 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~------------------~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l 179 (467)
...+.+.+..++..|++++|+..|.+++.. +|.+..++...|.++...|++++|+..+.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 346778999999999999999999999887 55556677788888999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Ch-hHHHHHHHHH
Q 012265 180 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MP-ATVATLVALK 230 (467)
Q Consensus 180 ~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p-~~~~~l~~ly 230 (467)
..+|++...+ +.+|.+|...|++++|+..|++++.+.+ ++ .+...+..+.
T Consensus 91 ~~~p~~~~a~-~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 91 KREETNEKAL-FRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHSTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hcCCcchHHH-HHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999998754 8899999999999999999999987765 34 3343444433
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.96 E-value=4.6e-09 Score=108.04 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---------------chHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDS---------------VMPLLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---------------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
....+++.+.+++..|++++|+..|++++..+|.+ ..+++..|.++.+.|++++|+..|.+++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34578899999999999999999999999999998 467788899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265 182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA 241 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~ 241 (467)
+|++... ++.+|.+|...|++++|+..|++++++.+ ++.++..++.++...+++++|..
T Consensus 347 ~p~~~~a-~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 DSANEKG-LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp STTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 49999999999999999999999998875 66778889999999888877654
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.96 E-value=1.4e-08 Score=84.06 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCC
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRL 112 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL 112 (467)
.++.+|.++..+|++++|+..|+.++...|++...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------------------------------------- 38 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT--------------------------------------------- 38 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH---------------------------------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc---------------------------------------------
Confidence 46789999999999999999999999887753210
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHH
Q 012265 113 SPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKII 189 (467)
Q Consensus 113 ~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~ 189 (467)
..++++.+.+++..|++++|...++.++..+|++ ..+++..|.++...|++++|+..|++++..+|++...
T Consensus 39 -----~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~- 112 (129)
T 2xev_A 39 -----PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA- 112 (129)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH-
T ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH-
Confidence 0135567888999999999999999999999999 6778889999999999999999999999999998754
Q ss_pred HHHHHHHHHHcCC
Q 012265 190 LLARAQVAAAANH 202 (467)
Q Consensus 190 ~l~Laql~~~~g~ 202 (467)
...+..+....++
T Consensus 113 ~~a~~~l~~l~~~ 125 (129)
T 2xev_A 113 RVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhh
Confidence 3555555544443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.6e-09 Score=88.26 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCC---chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDS---VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQ 195 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~---~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laq 195 (467)
..+++.+..++..|++++|...+++++..+|++ ..++...+.++...|++++|+..+++++..+|++... ++.+|.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA-LYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH-HHHHHH
Confidence 456788889999999999999999999999987 6677788888889999999999999999999988765 488899
Q ss_pred HHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHH
Q 012265 196 VAAAANHPFIAAESLAKIPDIQH-MPATVATLVALK 230 (467)
Q Consensus 196 l~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly 230 (467)
+|...|++++|+..|++++.+.+ ++.++..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999999887654 555555555544
No 162
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.94 E-value=1.7e-07 Score=105.29 Aligned_cols=248 Identities=15% Similarity=0.085 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhh----------
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDM---------- 99 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~---------- 99 (467)
...+|.|+|..+..+|++++|+..|.++ +|...+.-.+.-+ ...++..++.+.+.......+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~---~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA---NTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH---HHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence 4588999999999999999999999764 4555543222222 222344555555433211100
Q ss_pred -----hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHH
Q 012265 100 -----QNFQLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEEL 174 (467)
Q Consensus 100 -----~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~ 174 (467)
+.....+.+ +..... .-+++.|..+...|++++|...|..+ ..+.-.+..+++.|++++|++.
T Consensus 1176 aYAKl~rleele~f---I~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEF---INGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHH---HhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence 000000000 000001 12234555555555555555555553 1233344445555555555555
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012265 175 LGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAM 254 (467)
Q Consensus 175 l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~ 254 (467)
++++ .+...+ ...+..+...|+|..|..+...+. .+|+.+..++..|...|.+++|+.+|+.++...
T Consensus 1244 arKA-----~n~~aW-kev~~acve~~Ef~LA~~cgl~Ii---v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---- 1310 (1630)
T 1xi4_A 1244 ARKA-----NSTRTW-KEVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLE---- 1310 (1630)
T ss_pred HHHh-----CCHHHH-HHHHHHHhhhhHHHHHHHHHHhhh---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----
Confidence 5544 112222 444555555555555555544322 256667788999999999999999999998642
Q ss_pred cCCchHHHHHHHHHHHHHH--CCChhHHHHHHHHHHHhcC------CHHHHHHHHHHhccCC-hhHHH
Q 012265 255 TEDNKLSVIMQEAASFKLR--HGREEDASHLFEELVKTHG------SIEALVGLVTTSAHVD-VDKAE 313 (467)
Q Consensus 255 ~~~~~~~~ll~~la~~~l~--~g~~~~A~~~le~ll~~~p------d~~ala~Lv~a~~~~d-~~kA~ 313 (467)
+....++.++|.++.+ -++.-+++++|..-+...+ +...|..++..|.+.+ .++|.
T Consensus 1311 ---raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1311 ---RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ---hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3334567667777755 4566688888887776544 2455777888886554 67775
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.93 E-value=7.7e-09 Score=106.36 Aligned_cols=150 Identities=15% Similarity=0.039 Sum_probs=119.1
Q ss_pred HHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHH
Q 012265 26 IEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLA 105 (467)
Q Consensus 26 ~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~ 105 (467)
...+.+..+..+|.++..+|++++|+..|++++...|.+... . .+-...+.
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~--~~~~~~~~------------- 313 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--------------S--EKESKASE------------- 313 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------C--HHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--------------C--hHHHHHHH-------------
Confidence 345677789999999999999999999999999988865320 0 00000000
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 106 RVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 106 ~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
.....+++|++.+++..|++++|+..|++++..+|++..+++..|.++...|++++|+..|+++++.+|++
T Consensus 314 ---------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 314 ---------SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred ---------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 12345789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHH-Hhccc
Q 012265 186 SKIILLARAQVAAAANHPFIAAES-LAKIP 214 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~-L~~~~ 214 (467)
... +..++.++...|++++|... +.+++
T Consensus 385 ~~a-~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 385 KAA-RLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CH-HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 48899999999999988754 44443
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=4.2e-08 Score=87.65 Aligned_cols=154 Identities=14% Similarity=0.042 Sum_probs=111.6
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC----CC---ChhHHHHHHHHHHHcCC
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI----QH---MPATVATLVALKERAGD 235 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~~---~p~~~~~l~~ly~~~g~ 235 (467)
+..|++++|++.++.+. .+|.....++..+|.+|...|++++|+..+++++++ .. ...++..++.+|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46899999999555443 366444445689999999999999999999999752 11 23456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc---CCH----HHHHHHHHHh-ccC
Q 012265 236 IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH---GSI----EALVGLVTTS-AHV 307 (467)
Q Consensus 236 ~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~---pd~----~ala~Lv~a~-~~~ 307 (467)
+++|+..+++++...+............+..+|.++...|++++|...|++++... ++. .++..+..++ ...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999998764331211445567778999999999999999999999764 232 2234455554 456
Q ss_pred ChhHHHHHHh
Q 012265 308 DVDKAESYEK 317 (467)
Q Consensus 308 d~~kA~~l~~ 317 (467)
+.+.|..+..
T Consensus 162 ~~~~A~~~~~ 171 (203)
T 3gw4_A 162 NLLEAQQHWL 171 (203)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7788876654
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.91 E-value=5.1e-08 Score=95.94 Aligned_cols=241 Identities=11% Similarity=0.029 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
.++-....+....+..++|+.++..+|..+|++..+...-..-+..++ ....+.+..+..+....|.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPK----------- 121 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLK----------- 121 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCC-----------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCC-----------
Confidence 344444556677788899999999999999999888764333332332 1345555555444332222
Q ss_pred CCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChh--------HHHHHHHHHHHh
Q 012265 112 LSPKQREAIYANRVLLLLHA-N-KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAG--------KAEELLGQFAEK 181 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~-~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~--------~A~~~l~~~l~~ 181 (467)
.-.+..++..++... + .++++...++.++..+|.+..++....-++...+.++ +++..+.++++.
T Consensus 122 -----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 122 -----SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp -----CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 224677777777776 7 8999999999999999999999988888887777777 999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHcCC-------hHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHH---------------
Q 012265 182 LPDKSKIILLARAQVAAAANH-------PFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDG--------------- 238 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~~g~-------~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~--------------- 238 (467)
+|.+..++ ...+.++...++ +++++..+.+++..++ +...+..+..++...|+...
T Consensus 197 dp~N~SAW-~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
T 3q7a_A 197 DGRNNSAW-GWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN 275 (349)
T ss_dssp CTTCHHHH-HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----
T ss_pred CCCCHHHH-HHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence 99998765 778888888887 7899999999987765 66778888888888776510
Q ss_pred -H-HHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 239 -A-AAVLDSAIKWWLNAMT--EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 239 -A-~~~l~~al~~~~~~~~--~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
. ..+.+-++.+.....+ .+....-++.-++.++...|+.++|.++|+.+....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 276 PDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEY 332 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence 0 1111112211111000 001222244557999999999999999999988543
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.90 E-value=3.9e-09 Score=91.87 Aligned_cols=117 Identities=15% Similarity=0.016 Sum_probs=92.2
Q ss_pred hhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHh
Q 012265 29 ELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVL 108 (467)
Q Consensus 29 El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 108 (467)
..+..++.+|..++..|++++|+..|++++..+|+++.. +..+.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---------------~a~~~--------------------- 52 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---------------EAFDH--------------------- 52 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---------------SCCCH---------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---------------hhhhh---------------------
Confidence 355667899999999999999999999999999975431 00000
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcccc-------CCCCchHH----HHHHHHHHhcCChhHHHHHHHH
Q 012265 109 DLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDM-------FPDSVMPL----LLQAAVLVRENKAGKAEELLGQ 177 (467)
Q Consensus 109 ~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~-------~P~~~~~~----ll~a~l~~~~~~~~~A~~~l~~ 177 (467)
.+....+++|++.++...|++++|+..+++++.. +|++..++ +..|.++...|++++|+..|++
T Consensus 53 -----~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 53 -----AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 0112347899999999999999999999998888 88887777 7778888888888888888888
Q ss_pred HHHhCCCcH
Q 012265 178 FAEKLPDKS 186 (467)
Q Consensus 178 ~l~~~P~~~ 186 (467)
+++..|++.
T Consensus 128 Alel~p~d~ 136 (159)
T 2hr2_A 128 VVEMIEERK 136 (159)
T ss_dssp HHHHHHHCC
T ss_pred HHhcCCCcH
Confidence 888777654
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.90 E-value=9.1e-09 Score=89.53 Aligned_cols=103 Identities=19% Similarity=0.106 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCC
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQHM-------------PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTED 257 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~-------------p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~ 257 (467)
+.+|..+...|+|++|+..|++++++.+. ..++..++.++..+|++++|+..+++++..|.....-+
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444444455555555555544433221 22788899999999999999999999998865544434
Q ss_pred chHHHHH----HHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 258 NKLSVIM----QEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 258 ~~~~~ll----~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+.....| ...|.++..+|++++|+..|+++++.+|+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5555667 78899999999999999999999999874
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.89 E-value=2.4e-09 Score=105.70 Aligned_cols=153 Identities=12% Similarity=-0.038 Sum_probs=85.2
Q ss_pred hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265 28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV 107 (467)
Q Consensus 28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 107 (467)
.+.+..+..+|.++..+|++++|+..|++++...|.+... ....+..++...+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~~~~~l---------------- 228 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLYGKYQDMALAV---------------- 228 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-----------TCCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-----------hhcccHHHHHHHH----------------
Confidence 4566778999999999999999999999999998855310 0001111111111
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
...+++|.+.+++..|++++|+..|++++..+|++..+++..|.++...|++++|+..|+++++.+|++..
T Consensus 229 ---------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 229 ---------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp ---------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 11367788888888888888888888888888888777777777788888888888888888877777765
Q ss_pred HHHHHHHHH-HHHcCChHHHHHHHhccccCC
Q 012265 188 IILLARAQV-AAAANHPFIAAESLAKIPDIQ 217 (467)
Q Consensus 188 ~~~l~Laql-~~~~g~~~~A~~~L~~~~~~~ 217 (467)
. +..|+.+ ....+..+++...|.+++...
T Consensus 300 a-~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 300 I-RRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp -------------------------------
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4 3566666 334566667777777766543
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=8.4e-09 Score=82.42 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=67.5
Q ss_pred CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC---ChhHHH
Q 012265 148 FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVA 224 (467)
Q Consensus 148 ~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~ 224 (467)
+|++..++...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++...+ .+.++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY-WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 45666666666666777777777777777777777766554 36677777777777777777777765543 355566
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHH
Q 012265 225 TLVALKERA-GDIDGAAAVLDSAIK 248 (467)
Q Consensus 225 ~l~~ly~~~-g~~~~A~~~l~~al~ 248 (467)
.++.+|... |++++|+..|++++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 677777777 777777777776654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.3e-08 Score=84.43 Aligned_cols=103 Identities=16% Similarity=0.005 Sum_probs=91.5
Q ss_pred ccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-Chh
Q 012265 146 DMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK---SKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPA 221 (467)
Q Consensus 146 ~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~---~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~ 221 (467)
...|.+...++..|..+...|++++|+..|++++...|++ ... ++.+|.+|...|++++|+..|++++...+ ++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVL-HRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHH-HHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 3456777788889999999999999999999999999986 444 58899999999999999999999987654 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
++..++.+|...|++++|+..|++++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8889999999999999999999999875
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.87 E-value=3.4e-09 Score=104.62 Aligned_cols=133 Identities=15% Similarity=0.042 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc-----------------hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV-----------------MPLLLQAAVLVRENKAGKAEELLGQFA 179 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~-----------------~~~ll~a~l~~~~~~~~~A~~~l~~~l 179 (467)
....+++.+..++..|++++|+..|++++...|++. .+++..|.++...|++++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999999876 367788899999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 012265 180 EKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL-KERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 180 ~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l-y~~~g~~~~A~~~l~~al~~~ 250 (467)
..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..|..+ ....+..+.+...|.+++...
T Consensus 258 ~~~p~~~~a-~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 258 TEEEKNPKA-LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHCTTCHHH-HHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999876 49999999999999999999999998765 56677777777 344567778888888887653
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=2.9e-08 Score=79.88 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHH
Q 012265 153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKE 231 (467)
Q Consensus 153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~ 231 (467)
..++..|..+...|++++|+..+++++...|++... ++.+|.+|...|++++|+..++++++..+ ++.++..++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456677888899999999999999999999999875 48999999999999999999999987665 6778889999999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 012265 232 RAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 232 ~~g~~~~A~~~l~~al~~ 249 (467)
..|++++|+..|++++..
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999999864
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.86 E-value=8.3e-09 Score=82.43 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--cHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPD--KSKIILLARAQVA 197 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~--~~~~~~l~Laql~ 197 (467)
++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..++++++..|+ +... ++.+|.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV-WAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH-HHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999 8775 48999999
Q ss_pred HHc-CChHHHHHHHhccccCCC
Q 012265 198 AAA-NHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 198 ~~~-g~~~~A~~~L~~~~~~~~ 218 (467)
... |++++|+..|++++...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHhCCHHHHHHHHHHHhhccc
Confidence 999 999999999999987543
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.84 E-value=1.3e-08 Score=86.59 Aligned_cols=134 Identities=8% Similarity=-0.118 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc------hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----
Q 012265 117 REAIYANRVLLLLHANKMDQARELVAALPDMFPDSV------MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK----- 185 (467)
Q Consensus 117 ~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~------~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~----- 185 (467)
...++++.+.+++..|++++|...+++++...+... .++...|.++...|++++|+..+++++...+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 345778899999999999999999999887655422 245677888899999999999999988765431
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHhccccCC----C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 186 SKIILLARAQVAAAANHPFIAAESLAKIPDIQ----H---MPATVATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 186 ~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
...+...+|.+|...|++++|+..+++++++. . ...++..++.+|...|++++|+..+++++...
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 12245789999999999999999999997531 1 23356678999999999999999999998765
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.83 E-value=1.3e-09 Score=112.94 Aligned_cols=124 Identities=11% Similarity=-0.018 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA 199 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~ 199 (467)
.+++.+.+++..|++++|+..++++++.+|++..++...|.++...|++++|+..++++++.+|++... ++.+|.+|..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG-YYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Confidence 355678888999999999999999999999999999999999999999999999999999999999876 4899999999
Q ss_pred cCChHHHHHHHhccccCCC-ChhHHHHHHHH--HHHcCCHHHHHHHHH
Q 012265 200 ANHPFIAAESLAKIPDIQH-MPATVATLVAL--KERAGDIDGAAAVLD 244 (467)
Q Consensus 200 ~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l--y~~~g~~~~A~~~l~ 244 (467)
+|++++|+..|++++++.+ ++..+..++.+ +..+|++++|+..++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998765 56667677777 888999999999988
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.83 E-value=3.3e-08 Score=98.76 Aligned_cols=144 Identities=12% Similarity=0.007 Sum_probs=116.3
Q ss_pred hhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHH
Q 012265 28 IELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARV 107 (467)
Q Consensus 28 ~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 107 (467)
.+.+..+..+|.++..+|++++|+..|++++...+... . . ... ......
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----~------~---~~~----~~~~~~------------- 268 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----A------A---AED----ADGAKL------------- 268 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----H------H---SCH----HHHGGG-------------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----c------c---cCh----HHHHHH-------------
Confidence 34567789999999999999999999999998644221 0 0 000 000000
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 108 LDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 108 l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
.+....+++|.+.+++..|++++|+..+++++..+|++..+++..|.++...|++++|+..|+++++..|++..
T Consensus 269 ------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 269 ------QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ------HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 12234678999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHcCChHHHHHH
Q 012265 188 IILLARAQVAAAANHPFIAAES 209 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~ 209 (467)
. +..++.++...++++++...
T Consensus 343 ~-~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 343 I-QAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHHHHHHHHHHHHHH
Confidence 5 48889999999988887654
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.82 E-value=1.3e-08 Score=101.84 Aligned_cols=123 Identities=16% Similarity=0.057 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc----------------cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPD----------------MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK 181 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~----------------~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~ 181 (467)
...+++.+..++..|++++|+..+++++. .+|.+..++...|.++...|++++|+..++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34578899999999999999999999987 66777777888899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHH
Q 012265 182 LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAA 241 (467)
Q Consensus 182 ~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~ 241 (467)
+|++...+ +.+|.+|...|++++|+..|++++++.+ ++.++..++.++..+++.+++..
T Consensus 303 ~p~~~~a~-~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKAL-YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998764 8999999999999999999999988765 67777788888888777766543
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.82 E-value=3e-09 Score=87.44 Aligned_cols=85 Identities=18% Similarity=0.003 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHhcccc---CCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265 131 ANKMDQARELVAALPDM---FPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 207 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~---~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~ 207 (467)
.|++++|+..+++++.. +|++..+++..|.++...|++++|+..++++++.+|++... ++.+|.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL-RVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCCHHHHH
Confidence 45566666666666666 35555566666666666666666666666666666666554 366666666666666666
Q ss_pred HHHhccccC
Q 012265 208 ESLAKIPDI 216 (467)
Q Consensus 208 ~~L~~~~~~ 216 (467)
..|++++..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.78 E-value=3.5e-09 Score=109.59 Aligned_cols=120 Identities=13% Similarity=0.005 Sum_probs=97.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCH
Q 012265 158 QAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDI 236 (467)
Q Consensus 158 ~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~ 236 (467)
.|..+...|++++|+..|+++++.+|++... +..+|.+|..+|++++|+..|++++++.+ ++.++..++.+|..+|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455678999999999999999999999875 48999999999999999999999998875 677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH--HHHCCChhHHHHHHH
Q 012265 237 DGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASF--KLRHGREEDASHLFE 285 (467)
Q Consensus 237 ~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~--~l~~g~~~~A~~~le 285 (467)
++|+..|++++... +++.. .+..++.+ +...|++++|+..|+
T Consensus 91 ~eA~~~~~~al~~~----p~~~~---~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK----PHDKD---AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS----TTCTT---HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC----CCCHH---HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999863 22222 23335555 888999999999999
No 180
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.77 E-value=7.9e-07 Score=95.49 Aligned_cols=256 Identities=11% Similarity=0.056 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHhCC---------hHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHH-HhhhhhhhhhhhHH
Q 012265 33 IAVQLAYVQQLLGN---------TQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSL-KKLDRIKEKDMQNF 102 (467)
Q Consensus 33 i~~qlA~v~~~~G~---------~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~-~~l~~~~~~~~~~~ 102 (467)
+.+...|+.....+ .+....+|++++...|.+..+.+..+.-+...+. ..++. ..+.+.....|
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~---~~~a~r~il~rAi~~~P--- 375 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT---DSTVITKYLKLGQQCIP--- 375 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC---CTTHHHHHHHHHHHHCT---
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHhCC---
Confidence 34556777766654 2345678999999999999888755433322222 23333 33333322211
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccC-----------CCC-----------chHHHHHHH
Q 012265 103 QLARVLDLRLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMF-----------PDS-----------VMPLLLQAA 160 (467)
Q Consensus 103 ~~~~~l~~kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~-----------P~~-----------~~~~ll~a~ 160 (467)
....+++..+.+....|+++.|+.++++++... |.+ ..+++..+.
T Consensus 376 -------------~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 376 -------------NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 123577888999999999999999999988642 532 234566666
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-ChHHHHHHHhccccCC-CChhHHHHHHHHHHHcCCHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-HPFIAAESLAKIPDIQ-HMPATVATLVALKERAGDIDG 238 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~~g~~~~ 238 (467)
+..+.|..+.|..+|.+++...|.....+++..|++....| +++.|..+|+.+++.- ..+.++...+.+....|+.+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 66778899999999999998733221223355666666655 4999999999998643 367788788888889999999
Q ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhH
Q 012265 239 AAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDK 311 (467)
Q Consensus 239 A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~k 311 (467)
|..+|++++... ++......+|.....|-...|+.+.+..+++++++..|+...+..++--|...+.+.
T Consensus 523 AR~lferal~~~----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~~~~~~ 591 (679)
T 4e6h_A 523 VKSLFESSIDKI----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNY 591 (679)
T ss_dssp HHHHHHHHTTTS----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCBTTBCH
T ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCcchh
Confidence 999999998642 111245567777788888999999999999999999998777777777776555433
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.8e-07 Score=94.13 Aligned_cols=170 Identities=9% Similarity=0.042 Sum_probs=134.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccccCCCCch-----------------HHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 012265 121 YANRVLLLLHANKMDQARELVAALPDMFPDSVM-----------------PLLLQAAVLVRENKAGKAEELLGQFAEKLP 183 (467)
Q Consensus 121 ~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-----------------~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P 183 (467)
.+..+.-++..|++++|++.+..+++..|.... +..-.+.+|...|++++|+..+.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 446677888999999999999999988876532 245677889999999999999999887655
Q ss_pred CcH-----HHHHHHHHHHHHHcCChHHHHHHHhccccC----C--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 184 DKS-----KIILLARAQVAAAANHPFIAAESLAKIPDI----Q--H-MPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 184 ~~~-----~~~~l~Laql~~~~g~~~~A~~~L~~~~~~----~--~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
... ..+...++.++...|++++|+..++.++.. . + ...+...|+.+|...|++++|..++.+++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 421 123355677888899999999999988642 1 1 234667899999999999999999999987764
Q ss_pred HhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 252 NAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 252 ~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
... +......++...|.++...|++++|..+|++++...
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 167 KLD-DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp TSS-CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcc-cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 432 234455667778999999999999999999999764
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=2.5e-06 Score=83.47 Aligned_cols=227 Identities=13% Similarity=0.027 Sum_probs=157.0
Q ss_pred HHHHHHHhhhhhcCCCCChhh---------HHhhhhhHHHHHHHHHHHhCC----------hHHHHHHHHHHhccCCCch
Q 012265 5 YLIFVRIGQETLTDDNFAEDD---------IEIELAPIAVQLAYVQQLLGN----------TQEAFGAYTDIIKRNLADE 65 (467)
Q Consensus 5 l~~A~~~~~~~l~~~~~~~ee---------~~~El~~i~~qlA~v~~~~G~----------~~eA~~~y~~~l~~~p~d~ 65 (467)
+..+...+.+.....+++++- +.++...+|.-.+.++...|+ +++++..+..++..+|.+.
T Consensus 29 y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny 108 (331)
T 3dss_A 29 YQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY 108 (331)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH
Confidence 344455555555555666552 345566888899999988887 7899999999999999998
Q ss_pred HHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHhc
Q 012265 66 SSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSPKQREAIYANRVLLLLHANK-MDQARELVAAL 144 (467)
Q Consensus 66 ~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~~q~~~l~~n~all~l~~~~-~~~A~~~~~~l 144 (467)
.+..--..-+..++. ....+.+..+.++.+.++.+ -.++.++..+....|. ++++.+.++.+
T Consensus 109 ~aW~hR~wlL~~l~~-~~~~~EL~~~~k~l~~dprN----------------y~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 109 GTWHHRCWLLSRLPE-PNWARELELCARFLEADERN----------------FHCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHCTTC----------------HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCc-ccHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 887532211212221 13445555555443333221 2367778888888888 69999999999
Q ss_pred cccCCCCchHHHHHHHHHHhc--------------CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc----------
Q 012265 145 PDMFPDSVMPLLLQAAVLVRE--------------NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA---------- 200 (467)
Q Consensus 145 ~~~~P~~~~~~ll~a~l~~~~--------------~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~---------- 200 (467)
+..+|.+..++...+.++... +.+++++..+.+++..+|++..++ +.+..++...
T Consensus 172 I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW-~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 172 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW-FYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp HHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH-HHHHHHHHSSSCGGGCCHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhccCccccchHH
Confidence 999999999998888777655 568899999999999999998876 4455555544
Q ss_pred -CChHHHHHHHhccccCCCChhH-HHHHHHHHH---HcCCHHHHHHHHHHHHHH
Q 012265 201 -NHPFIAAESLAKIPDIQHMPAT-VATLVALKE---RAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 201 -g~~~~A~~~L~~~~~~~~~p~~-~~~l~~ly~---~~g~~~~A~~~l~~al~~ 249 (467)
+.+++++..+..++++.++-.. +..++.+.. ..|..+++...|.+++..
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999887653322 112222221 356777888888888765
No 183
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.1e-06 Score=86.47 Aligned_cols=168 Identities=13% Similarity=0.013 Sum_probs=137.0
Q ss_pred HHHHHHcC-CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc-C
Q 012265 125 VLLLLHAN-KMDQARELVAALPDMFPDSVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA-N 201 (467)
Q Consensus 125 all~l~~~-~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~-~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~-g 201 (467)
....+..+ ..++|..+++.++..+|++..++...+.++...+ .+++++..+..++..+|.+..++ .....++... +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW-~hR~wlL~~l~~ 138 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW-HHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH-HHHHHHHHHHCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHhcC
Confidence 33344444 4678999999999999999999999999998888 59999999999999999998765 7788888777 7
Q ss_pred -ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265 202 -HPFIAAESLAKIPDIQH-MPATVATLVALKERAGDID--------GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK 271 (467)
Q Consensus 202 -~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~--------~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~ 271 (467)
++++++..+.++++.++ +..++.....++...|.++ +++..+++++... +....+|...+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGWRWYLR 211 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 99999999999998875 6778888888888888777 8888888888742 22234577678888
Q ss_pred HHCCC-------hhHHHHHHHHHHHhcCC-HHHHHHH
Q 012265 272 LRHGR-------EEDASHLFEELVKTHGS-IEALVGL 300 (467)
Q Consensus 272 l~~g~-------~~~A~~~le~ll~~~pd-~~ala~L 300 (467)
...++ ++++++.+++++..+|+ ..++..+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Yl 248 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYL 248 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 88886 68999999999999986 4555443
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.67 E-value=2.9e-07 Score=97.18 Aligned_cols=174 Identities=12% Similarity=-0.057 Sum_probs=141.4
Q ss_pred HHHHHHcCC-HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCC----------hhHHHHHHHHHHHhCCCcHHHHHHHH
Q 012265 125 VLLLLHANK-MDQARELVAALPDMFPDSVMPLLLQAAVLVRENK----------AGKAEELLGQFAEKLPDKSKIILLAR 193 (467)
Q Consensus 125 all~l~~~~-~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~----------~~~A~~~l~~~l~~~P~~~~~~~l~L 193 (467)
.+.....|. .++|.+.++.++..+|++..++...+.++...++ +++|+..+.+++..+|.+..++ ...
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW-~hR 113 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW-HHR 113 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHH-HHH
Confidence 344445566 5788999999999999999999999999888877 9999999999999999998865 888
Q ss_pred HHHHHHcC--ChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 012265 194 AQVAAAAN--HPFIAAESLAKIPDIQH-MPATVATLVALKERAG-DIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAAS 269 (467)
Q Consensus 194 aql~~~~g--~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g-~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~ 269 (467)
+.++...| ++++|+..++++++.++ +..+|...+.++...| .++++++.+.+++.. ++...++|...+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-------~p~n~saW~~r~~ 186 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-------NFSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-------TCCCHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-------CCCCccHHHHHHH
Confidence 99999999 67999999999998775 6778888899999999 899999999888763 1222345666777
Q ss_pred HHHHC--------------CChhHHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Q 012265 270 FKLRH--------------GREEDASHLFEELVKTHGS-IEALVGLVTTSAH 306 (467)
Q Consensus 270 ~~l~~--------------g~~~~A~~~le~ll~~~pd-~~ala~Lv~a~~~ 306 (467)
++... +.+++|++.+.+++..+|+ ..++..+-..+..
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 77663 5578999999999999986 4566655544443
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.67 E-value=2e-07 Score=96.45 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=106.3
Q ss_pred HHHhcCChhHHHHHHHHHHHhC-----CCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HH
Q 012265 161 VLVRENKAGKAEELLGQFAEKL-----PDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VA 224 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~ 224 (467)
.+..+|+|++|+.+++++++.. |+++.. ....||.+|..+|+|++|+.++++++++ . .+|.+ +.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567999999999999999753 444332 3478899999999999999999999853 2 25654 56
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.|+.+|..+|++++|+.+|++|+..+....+ +.+....++..++..+..+|.+++|..+|.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999998876543 445666677778999999999999999999987643
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.7e-08 Score=79.84 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc------HHHHHHH
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK------SKIILLA 192 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~------~~~~~l~ 192 (467)
..+++.+.+++..|++++|+..+++++..+|++..++...|.++...|++++|+..+++++..+|++ ... ++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL-QYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH-HHH
Confidence 3567889999999999999999999999999998888888999999999999999999999999987 554 478
Q ss_pred HHHHHHHcCChHHHHHHHhccc
Q 012265 193 RAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~ 214 (467)
++.++...|++++|+..++++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHhHhhhHhHHHHhH
Confidence 8888888888888877777654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.64 E-value=4.7e-08 Score=80.16 Aligned_cols=86 Identities=12% Similarity=-0.087 Sum_probs=73.3
Q ss_pred hcCChhHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHH
Q 012265 164 RENKAGKAEELLGQFAEK---LPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGA 239 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~---~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A 239 (467)
..|++++|+..|+++++. +|++... ++.+|.+|...|++++|+..|+++++..+ ++.++..++.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAEC-YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 368999999999999999 4776654 58999999999999999999999998765 678888999999999999999
Q ss_pred HHHHHHHHHHH
Q 012265 240 AAVLDSAIKWW 250 (467)
Q Consensus 240 ~~~l~~al~~~ 250 (467)
+..|++++...
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=1.6e-06 Score=91.49 Aligned_cols=138 Identities=13% Similarity=-0.040 Sum_probs=113.4
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHhcC--ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC-ChHHHHHHH
Q 012265 134 MDQARELVAALPDMFPDSVMPLLLQAAVLVREN--KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAAN-HPFIAAESL 210 (467)
Q Consensus 134 ~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~--~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g-~~~~A~~~L 210 (467)
++++...++.++..+|++..++...+-++...+ ++++|+..+.++++.+|.+..++ ...+.++...| .++++++.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW-~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW-DYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHH-HHHHHHHHHcCCChHHHHHHH
Confidence 677888899999999999999999999998888 66999999999999999998765 77888888899 899999999
Q ss_pred hccccCCC-ChhHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265 211 AKIPDIQH-MPATVATLVALKERA--------------GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 275 (467)
Q Consensus 211 ~~~~~~~~-~p~~~~~l~~ly~~~--------------g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g 275 (467)
.++++.++ +...|...+.++... +.++++++++.+|+... |++ .++|..++.++...+
T Consensus 168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~----P~~---~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD----PND---QSAWFYHRWLLGRAE 240 (567)
T ss_dssp HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC----SSC---SHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC----CCC---ccHHHHHHHHHhcCC
Confidence 99998776 667777778777774 45688889998888652 222 245666788887888
Q ss_pred ChhH
Q 012265 276 REED 279 (467)
Q Consensus 276 ~~~~ 279 (467)
++++
T Consensus 241 ~~~~ 244 (567)
T 1dce_A 241 PHDV 244 (567)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 7665
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.61 E-value=8.2e-08 Score=78.19 Aligned_cols=80 Identities=10% Similarity=-0.070 Sum_probs=59.3
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 136 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
.|+..+++++..+|++..+++..|.++...|++++|+..|++++..+|++... ++.+|.+|...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666777777777777777777777777777888887777777777777654 37777777777777777777777765
Q ss_pred C
Q 012265 216 I 216 (467)
Q Consensus 216 ~ 216 (467)
+
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 190
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.61 E-value=8.5e-07 Score=95.24 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----------CCc-
Q 012265 119 AIYANRVLLLLHANKMDQAR-ELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKL-----------PDK- 185 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~-~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----------P~~- 185 (467)
.+++..+.++...|+.+.|+ .++++++...|.+...++..+.+....|++++|..+|++++... |.+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 45666666777788888886 99999999899888777888888888999999999999988752 531
Q ss_pred ---------HHHHHHHHHHHHHHcCChHHHHHHHhccccC-CC-ChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHh
Q 012265 186 ---------SKIILLARAQVAAAANHPFIAAESLAKIPDI-QH-MPATVATLVALKERA-GDIDGAAAVLDSAIKWWLNA 253 (467)
Q Consensus 186 ---------~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~-~~-~p~~~~~l~~ly~~~-g~~~~A~~~l~~al~~~~~~ 253 (467)
...+.+.++.+..+.|+.+.|..+|.+++.. .. .+.++...+.+..+. ++.+.|..+|+.++..+++
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~- 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT- 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-
Confidence 2224477788888889999999999998765 22 345555445554444 4589999999999987632
Q ss_pred ccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC---HHHHHHHHHHh--ccCChhHHHHHHhc
Q 012265 254 MTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS---IEALVGLVTTS--AHVDVDKAESYEKR 318 (467)
Q Consensus 254 ~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd---~~ala~Lv~a~--~~~d~~kA~~l~~~ 318 (467)
+. .++...+.+....|+.+.|..+|++++...|+ ...+......+ .+.+.+.+..+.++
T Consensus 503 ---~~---~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 503 ---DG---EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp ---CH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred ---ch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 24556788888899999999999999988763 22222222222 56777777666544
No 191
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.59 E-value=1.5e-07 Score=95.13 Aligned_cols=239 Identities=12% Similarity=0.025 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcC
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLR 111 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~k 111 (467)
..+...+..+...|++++|+..|+.+.+..+ ++.+..-. +.+..+.++..++...+.. |+
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~L---i~~Y~Klg~l~e~e~f~~~-----pn----------- 121 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETEL---IFALAKTNRLAELEEFING-----PN----------- 121 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHH---HHHHHHhCCHHHHHHHHcC-----Cc-----------
Confidence 3556677888999999999998888887432 32222111 1111222334443332211 11
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHH
Q 012265 112 LSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILL 191 (467)
Q Consensus 112 L~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l 191 (467)
...+.+.+..+...|.+++|...|..+ ..+.-+|..+++.|++++|++.++++ +++..+ .
T Consensus 122 ------~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~W-k 181 (449)
T 1b89_A 122 ------NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTW-K 181 (449)
T ss_dssp ---------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHH-H
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhH-H
Confidence 125677888999999999999999977 23556778889999999999999988 244443 6
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK 271 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~ 271 (467)
.....+...|+++.|..+...+. .+|+-...++.+|...|++++|+.+|++++.. +.....++.++|.++
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l-------e~ah~~~ftel~il~ 251 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAALGL-------ERAHMGMFTELAILY 251 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHH
Confidence 66788999999999988777644 35666667889999999999999999998753 233445677777777
Q ss_pred HH--CCChhHHHHHHHHHHHhcC------CHHHHHHHHHHhccCC-hhHHHHHHhcCC
Q 012265 272 LR--HGREEDASHLFEELVKTHG------SIEALVGLVTTSAHVD-VDKAESYEKRLK 320 (467)
Q Consensus 272 l~--~g~~~~A~~~le~ll~~~p------d~~ala~Lv~a~~~~d-~~kA~~l~~~L~ 320 (467)
.+ .|+..+.++.|...+...| +...+..++..|.+.| .+.|....-.-|
T Consensus 252 ~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 252 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 55 3555677777765554444 2345677777775444 666654443333
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.58 E-value=4e-07 Score=70.01 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
..++++.+.+++..|++++|...+++++..+|++..++...|.++...|++++|+..+++++..+|++... +..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-KQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH-HHHHHHHH
Confidence 34677788888888888888888888888888888888888888888888888888888888888888765 47778877
Q ss_pred HHcC
Q 012265 198 AAAN 201 (467)
Q Consensus 198 ~~~g 201 (467)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.55 E-value=3.3e-07 Score=74.48 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 169 GKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 169 ~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
.+|+..|+++++.+|++... ++.+|.+|...|++++|+..|++++.+.+ .+..+..++.+|..+|++++|+..|++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46889999999999999875 48999999999999999999999998765 56778899999999999999999999999
Q ss_pred HHHHH
Q 012265 248 KWWLN 252 (467)
Q Consensus 248 ~~~~~ 252 (467)
...+.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87643
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.48 E-value=1.5e-07 Score=81.69 Aligned_cols=86 Identities=14% Similarity=0.010 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCCh----------hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcC
Q 012265 132 NKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKA----------GKAEELLGQFAEKLPDKSKIILLARAQVAAAAN 201 (467)
Q Consensus 132 ~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~----------~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g 201 (467)
+++++|++.++.++..+|++..++...+.++...+++ ++|+..|+++++.+|++..++ +.+|.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~-~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV-WCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHH-HHHHHHHHHhc
Confidence 4688999999999999999999998888888887765 499999999999999998764 89999998875
Q ss_pred -----------ChHHHHHHHhccccCCC
Q 012265 202 -----------HPFIAAESLAKIPDIQH 218 (467)
Q Consensus 202 -----------~~~~A~~~L~~~~~~~~ 218 (467)
++++|+..|++++++++
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 88999999998888765
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.8e-07 Score=74.90 Aligned_cols=91 Identities=11% Similarity=-0.021 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-C------hhHHHH
Q 012265 153 MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-M------PATVAT 225 (467)
Q Consensus 153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~------p~~~~~ 225 (467)
..+...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++.+.+ + +.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG-YSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456678888999999999999999999999999875 48999999999999999999999998765 3 455667
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 012265 226 LVALKERAGDIDGAAAVLD 244 (467)
Q Consensus 226 l~~ly~~~g~~~~A~~~l~ 244 (467)
++.++...|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7888888887776655444
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.45 E-value=4.6e-07 Score=72.12 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=55.3
Q ss_pred cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC
Q 012265 147 MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDI 216 (467)
Q Consensus 147 ~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~ 216 (467)
.+|++..+++..|.++...|++++|+..|+++++.+|++... ++.+|.+|...|++++|+..|++++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT-YYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367888888888888888888888888888888888888765 488888888888888888888887754
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.43 E-value=8.5e-07 Score=68.13 Aligned_cols=83 Identities=13% Similarity=0.048 Sum_probs=70.0
Q ss_pred CchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHH
Q 012265 151 SVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVAL 229 (467)
Q Consensus 151 ~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~l 229 (467)
+..++...|.++...|++++|+..+++++..+|++... ++.+|.+|...|++++|+..|++++.+.+ ++.++..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44566778888999999999999999999999998765 48999999999999999999999987654 66777778888
Q ss_pred HHHcC
Q 012265 230 KERAG 234 (467)
Q Consensus 230 y~~~g 234 (467)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.43 E-value=5.2e-07 Score=78.26 Aligned_cols=101 Identities=10% Similarity=-0.049 Sum_probs=74.1
Q ss_pred HhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 012265 163 VRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 163 ~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
.+.+.+++|++.++++++.+|++...+ +.++.+++..++++.+...++ .+++|+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~-~n~G~~l~~l~~~~~g~~al~-----------------------~~~eAi~~ 68 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNL-TRWGGVLLELSQFHSISDAKQ-----------------------MIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCHHHHHH-----------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHhcccchhhhhHh-----------------------HHHHHHHH
Confidence 356778999999999999999998864 778999999888764433221 25666666
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHC-----------CChhHHHHHHHHHHHhcCCH
Q 012265 243 LDSAIKWWLNAMTEDNKLSVIMQEAASFKLRH-----------GREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 243 l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~-----------g~~~~A~~~le~ll~~~pd~ 294 (467)
|++|+... +....++..+|.+|... |++++|+..|+++++++|+.
T Consensus 69 le~AL~ld-------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 69 FEEALLID-------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhC-------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 66666641 22233455566666655 58999999999999999874
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=1.9e-06 Score=67.68 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCCch-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHc
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDSVM-PLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAA 200 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~-~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~ 200 (467)
++.+..++..|++++|+..+++++..+|++.. +++..|.++...|++++|+..|++++..+|++.... ..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ-AR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH-HH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-HH--------
Confidence 46778888888888888888888888888887 888888888888888888888888888888875432 11
Q ss_pred CChHHHHHHHhcccc
Q 012265 201 NHPFIAAESLAKIPD 215 (467)
Q Consensus 201 g~~~~A~~~L~~~~~ 215 (467)
+.+.+|+..|+++..
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 556777777777764
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.29 E-value=3.8e-06 Score=86.85 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccc-----CCCCch---HHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCcHH-
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDM-----FPDSVM---PLLLQAAVLVRENKAGKAEELLGQFAEKL-----PDKSK- 187 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~-----~P~~~~---~~ll~a~l~~~~~~~~~A~~~l~~~l~~~-----P~~~~- 187 (467)
.+.+..+...|++++|+..+++++.. .|+++. .+-.+|.+|..+|+|++|+.+++++++.. |+++.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 44555667889999999998876632 355544 34467788899999999999999988742 44433
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 188 -IILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VATLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 188 -~~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
..+..||.+|..+|++++|+..|++++++ . .+|.+ ...+..++..++.+++|..+|.++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23478999999999999999999999852 2 25654 4578889999999999999999987654
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.27 E-value=3.7e-06 Score=66.77 Aligned_cols=71 Identities=18% Similarity=0.079 Sum_probs=61.1
Q ss_pred hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012265 181 KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLN 252 (467)
Q Consensus 181 ~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~ 252 (467)
.+|++... ++.+|.+|...|++++|+..|++++++++ .+.++..++.+|...|++++|+..|++++...+.
T Consensus 2 ~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFT-RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 46888775 49999999999999999999999998765 6778889999999999999999999999987543
No 202
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.23 E-value=6.5e-05 Score=77.90 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccc--CCCCchHHHHHHHHHHhc---------CChhHHHHHHHHHHHh--CCCcH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDM--FPDSVMPLLLQAAVLVRE---------NKAGKAEELLGQFAEK--LPDKS 186 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~--~P~~~~~~ll~a~l~~~~---------~~~~~A~~~l~~~l~~--~P~~~ 186 (467)
+..+..-.+...|++++|.++|+++... .|+......+ ...+... +..++|..++.++... .|+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~L-i~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVL-LYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4444455667899999999999998764 3544332211 1223332 3467899999998876 36643
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccccCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIPDIQ--HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIM 264 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~--~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll 264 (467)
.+..|...|.+.|++++|..+|+.+.... ++...+..+...|.+.|+.++|..+|+.+... ...| +. ..+
T Consensus 107 --tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~P---d~-~ty 178 (501)
T 4g26_A 107 --TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES--EVVP---EE-PEL 178 (501)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCCC---CH-HHH
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC---CH-HHH
Confidence 34788999999999999999999997644 45556788999999999999999999998753 1222 21 134
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 012265 265 QEAASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTT 303 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a 303 (467)
..+...+.+.|+.++|..+|+++.... |+..+...++..
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 446777899999999999999998765 665444444333
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.13 E-value=0.00014 Score=71.57 Aligned_cols=142 Identities=12% Similarity=0.090 Sum_probs=93.9
Q ss_pred ccCCCCchH--HHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---cC-ChHHHHH----HHhc
Q 012265 146 DMFPDSVMP--LLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAA---AN-HPFIAAE----SLAK 212 (467)
Q Consensus 146 ~~~P~~~~~--~ll~a~l~~~~~~---~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~---~g-~~~~A~~----~L~~ 212 (467)
..-|.+..+ .++.|.-++..+. ..+|+.+|+++++.+|+...+. -.++..|+. .+ ....... .++.
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~-A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR-AEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 345666665 3466666655444 4689999999999999986542 334444431 11 1111111 2222
Q ss_pred cc--cCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 213 IP--DIQ-HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 213 ~~--~~~-~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
+. ... ..+.++..++..+...|++++|+..+++|+... +.. ..+..+|.++...|++++|++.|++++.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s~-~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-------MSW-LNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11 222 356667677777777899999999999999861 122 2334479999999999999999999999
Q ss_pred hcCCHHH
Q 012265 290 THGSIEA 296 (467)
Q Consensus 290 ~~pd~~a 296 (467)
.+|....
T Consensus 339 L~P~~~t 345 (372)
T 3ly7_A 339 LRPGANT 345 (372)
T ss_dssp HSCSHHH
T ss_pred cCCCcCh
Confidence 9998654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=2.4e-05 Score=66.13 Aligned_cols=111 Identities=15% Similarity=-0.010 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 012265 166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER----AGDIDGAAA 241 (467)
Q Consensus 166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~ 241 (467)
+++++|+..|+++.+..... . . |+.+|...+.+++|+.+|+++.+.. ++.....|+.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~---a-~-lg~~y~~g~~~~~A~~~~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF---G-C-LSLVSNSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT---H-H-HHHHTCTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh---h-h-HHHHHHcCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 46778888998888876333 2 2 8888888888888999999887653 46667788888888 788999999
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHH----CCChhHHHHHHHHHHHhc
Q 012265 242 VLDSAIKWWLNAMTEDNKLSVIMQEAASFKLR----HGREEDASHLFEELVKTH 291 (467)
Q Consensus 242 ~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~----~g~~~~A~~~le~ll~~~ 291 (467)
+|+++... ++ ...+..+|.+|.. .+++++|..+|+++.+..
T Consensus 83 ~~~~Aa~~------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99988753 11 2245567888888 789999999999988763
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.09 E-value=6.2e-06 Score=64.63 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHc
Q 012265 156 LLQAAVLVRENKAGKAEELLGQFAEKLPDKSK-IILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERA 233 (467)
Q Consensus 156 ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~-~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~ 233 (467)
+..|..+...|++++|+..++++++.+|++.. . ++.+|.+|...|++++|+..|++++.+.+ ++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEA-YYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 45677888999999999999999999999976 5 48999999999999999999999997765 3443311
Q ss_pred CCHHHHHHHHHHHHHH
Q 012265 234 GDIDGAAAVLDSAIKW 249 (467)
Q Consensus 234 g~~~~A~~~l~~al~~ 249 (467)
+.+.+++..|+++...
T Consensus 75 ~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455566666555543
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.09 E-value=2.2e-05 Score=61.78 Aligned_cols=70 Identities=16% Similarity=0.010 Sum_probs=58.4
Q ss_pred CCCCchHHHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC
Q 012265 148 FPDSVMPLLLQAAVLVRENK---AGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH 218 (467)
Q Consensus 148 ~P~~~~~~ll~a~l~~~~~~---~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~ 218 (467)
+|++...+...|.+++..++ .++|..+|++++..+|++.... +.+|.+++.+|+|++|+..++++++..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~-~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAAL-SLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57888888888887764444 6899999999999999998765 8889999999999999999999987654
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.05 E-value=0.0006 Score=70.43 Aligned_cols=199 Identities=9% Similarity=0.002 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhh-c
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLD-L 110 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~-~ 110 (467)
.+|+..|..+..+|+.++|..+|++++.. |.+..+.+... .+.... ..+..+..... ..+... .
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~----~~~e~~---~~~~~l~~~~~-------~~~~~~~~ 278 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYG----LVMDEE---AVYGDLKRKYS-------MGEAESAE 278 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHH----HHTTCT---HHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHH----hhcchh---HHHHHHHHHHH-------hhccchhh
Confidence 56888888899999999999999999999 98765554211 111111 11222211100 000000 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCC-CchHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPD-SVMPLLLQAAVLVREN-KAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~-~~~~~ll~a~l~~~~~-~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
.........++.+.+.+....+.++.|+.+++.+ ..|. ....++-.|.+-...+ +.+.|..+++.+++.+|+++..
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 0012233456777788877888899999999998 3454 2233333454444444 6999999999999999998765
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
+ +.+++.....|+.+.|..+|+++.. ...++.....+-...|+.+.+..++++++....
T Consensus 357 ~-~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 357 K-EEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp H-HHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 4 6778888999999999999999853 456777777777788999999999999887654
No 208
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.05 E-value=0.0001 Score=76.39 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=115.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHcCC---------hHHHHHHHhccccCC--CChhHHHHH
Q 012265 160 AVLVRENKAGKAEELLGQFAEK--LPDKSKIILLARAQVAAAANH---------PFIAAESLAKIPDIQ--HMPATVATL 226 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~Laql~~~~g~---------~~~A~~~L~~~~~~~--~~p~~~~~l 226 (467)
..+.+.|+.++|+.++.++.+. .|+... +..|..++...+. ++.|..+|+.+.... ++..++..+
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t--yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYH--YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4567999999999999999886 355432 2455556655443 688999999987543 455678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHHHHHHh
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALVGLVTTS 304 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~Lv~a~ 304 (467)
+..|.+.|+.++|..+|+++... ... ++.. .+..+...+.+.|+.++|..+|+++.+.. ||...+..|+.++
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~--g~~---Pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAF--GIQ---PRLR-SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT--TCC---CCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCC---Cccc-eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999998752 111 2222 24445667889999999999999999875 8888888899988
Q ss_pred c-cCChhHHHHHHhcC
Q 012265 305 A-HVDVDKAESYEKRL 319 (467)
Q Consensus 305 ~-~~d~~kA~~l~~~L 319 (467)
. ..+.++|..++..+
T Consensus 186 ~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 186 MDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHH
Confidence 5 45689998887654
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.04 E-value=1.6e-05 Score=80.72 Aligned_cols=93 Identities=8% Similarity=-0.013 Sum_probs=77.9
Q ss_pred HcCChHHHHHHHhccccC-----C-CChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Q 012265 199 AANHPFIAAESLAKIPDI-----Q-HMPAT---VATLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQEAA 268 (467)
Q Consensus 199 ~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~~la 268 (467)
..|+|++|+..|++++++ . .+|.+ +..|+.+|..+|++++|+.++++++..+....+ +.+.....+..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999988752 2 25554 567899999999999999999999999876543 4567777888999
Q ss_pred HHHHHCCChhHHHHHHHHHHHhc
Q 012265 269 SFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 269 ~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+|..+|++++|..+|++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.96 E-value=7.3e-05 Score=75.91 Aligned_cols=97 Identities=8% Similarity=-0.099 Sum_probs=80.6
Q ss_pred HHHHHcCChHHHHHHHhccccCC------CChh---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-cCCchHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQ------HMPA---TVATLVALKERAGDIDGAAAVLDSAIKWWLNAM-TEDNKLSVIM 264 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~------~~p~---~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~-~~~~~~~~ll 264 (467)
.-+..+|+|++|+..+++++++. .+|. ++..|+.+|..+|++++|+.++++++..+.... ++.+.....+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34457899999999999987532 2554 456789999999999999999999999887654 3456777788
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 265 QEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 265 ~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..+|.+|..+|++++|..+|+++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999864
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.93 E-value=7.8e-05 Score=75.70 Aligned_cols=111 Identities=11% Similarity=-0.070 Sum_probs=84.2
Q ss_pred HHHhcCChhHHHHHHHHHHHhC-----CCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HH
Q 012265 161 VLVRENKAGKAEELLGQFAEKL-----PDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VA 224 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~-----P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~ 224 (467)
-+..+|++++|+.+++++++.. |+++.. ....||.+|..+|+|++|+..+++++++ . .+|.+ +.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3457899999999999999753 444432 3467899999999999999999999853 2 26654 56
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWWLNAMT-EDNKLSVIMQEAASFK 271 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~-~~~~~~~ll~~la~~~ 271 (467)
.|+.+|..+|++++|+.+|++|+..+....+ +.+....++..++.++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 7999999999999999999999998866543 3344444444455444
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=8.9e-05 Score=62.58 Aligned_cols=109 Identities=10% Similarity=-0.019 Sum_probs=89.4
Q ss_pred CHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----cCChHHHHH
Q 012265 133 KMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAA----ANHPFIAAE 208 (467)
Q Consensus 133 ~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~----~g~~~~A~~ 208 (467)
++++|...+++..... +..+. .+.++...+..++|+..|+++.+. .+... .+.|+.+|.. .+++++|+.
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a-~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNG-CRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHH-HHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHH-HHHHHHHHHcCCCCCccHHHHHH
Confidence 4677888888777654 33444 777787888889999999999987 45554 4899999999 899999999
Q ss_pred HHhccccCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 012265 209 SLAKIPDIQHMPATVATLVALKER----AGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 209 ~L~~~~~~~~~p~~~~~l~~ly~~----~g~~~~A~~~l~~al~~ 249 (467)
+|+++.+.. ++.....|+.+|.. .+++++|+.+|+++...
T Consensus 83 ~~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999998764 56677789999999 89999999999999863
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.89 E-value=5.9e-05 Score=76.59 Aligned_cols=93 Identities=14% Similarity=-0.068 Sum_probs=75.4
Q ss_pred hcCChhHHHHHHHHHHHh-----CCCcHHH--HHHHHHHHHHHcCChHHHHHHHhccccC-----C-CChhH---HHHHH
Q 012265 164 RENKAGKAEELLGQFAEK-----LPDKSKI--ILLARAQVAAAANHPFIAAESLAKIPDI-----Q-HMPAT---VATLV 227 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~-----~P~~~~~--~~l~Laql~~~~g~~~~A~~~L~~~~~~-----~-~~p~~---~~~l~ 227 (467)
..|+|++|+.+++++++. .|+++.. ....||.+|..+|+|++|+.++++++++ . .+|.+ +..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467899999999999984 3555432 2367899999999999999999999853 2 26654 67899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTE 256 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~ 256 (467)
.+|..+|++++|+.+|++|+..+....+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999988665443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.77 E-value=0.00016 Score=71.15 Aligned_cols=127 Identities=16% Similarity=0.049 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHh---cC-ChhHHHH----HHHH--HHHhCCCcHHH
Q 012265 122 ANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVR---EN-KAGKAEE----LLGQ--FAEKLPDKSKI 188 (467)
Q Consensus 122 ~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~---~~-~~~~A~~----~l~~--~l~~~P~~~~~ 188 (467)
|-++.-++..+. +.+|+.+|+++++.+|++..++...+..++. .+ ....... .+.. .+...|.++..
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~ 279 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII 279 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHH
Confidence 345555665544 6899999999999999998876655544431 11 1111111 1221 12345777654
Q ss_pred HHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 189 ILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 189 ~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
+..++.+++..|++++|+..+++++.++++...+..++.++...|++++|+..|++|+..
T Consensus 280 -~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 280 -YQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 477788888899999999999999988766656678899999999999999999999975
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.71 E-value=4.5e-05 Score=59.97 Aligned_cols=67 Identities=15% Similarity=0.034 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc
Q 012265 119 AIYANRVLLLLHANK---MDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDK 185 (467)
Q Consensus 119 ~l~~n~all~l~~~~---~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~ 185 (467)
.+++..+.+++..+. .++|...+++++..+|+++.+.++.|.++...|+|++|+..++++++..|++
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456667777766555 7999999999999999999999999999999999999999999999999984
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.68 E-value=0.00057 Score=54.47 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCH
Q 012265 220 PATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSI 294 (467)
Q Consensus 220 p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~ 294 (467)
+.-...+|..+...|++..|+..|+.|+..+............++..+|..+.+.|+++.|..+++++++..|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 334457888888999999999999999887643221123345677789999999999999999999999999874
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.67 E-value=0.00092 Score=63.32 Aligned_cols=106 Identities=16% Similarity=0.044 Sum_probs=83.7
Q ss_pred hccccCCCCchHHHHHHHHHH---hc--CC------hhHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHc-----CChH
Q 012265 143 ALPDMFPDSVMPLLLQAAVLV---RE--NK------AGKAEELLGQFAEKLPD--KSKIILLARAQVAAAA-----NHPF 204 (467)
Q Consensus 143 ~l~~~~P~~~~~~ll~a~l~~---~~--~~------~~~A~~~l~~~l~~~P~--~~~~~~l~Laql~~~~-----g~~~ 204 (467)
.+...+|+++.+++-.|.++. .. +. ..+|..+++++++.+|+ +. .++..|+.+|... |+.+
T Consensus 143 ~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G-sA~~~LG~lY~~vPp~~gGd~e 221 (301)
T 3u64_A 143 VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG-AVWNVLTKFYAAAPESFGGGME 221 (301)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH-HHHHHHHHHHHHSCTTTTCCHH
T ss_pred HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC-HHHHHHHHHHHhCCCccCCCHH
Confidence 345567888887766655442 22 33 35788999999999999 43 3568999999984 9999
Q ss_pred HHHHHHhccccCCC--ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 012265 205 IAAESLAKIPDIQH--MPATVATLVALKER-AGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 205 ~A~~~L~~~~~~~~--~p~~~~~l~~ly~~-~g~~~~A~~~l~~al~~ 249 (467)
+|..+|++++.+.+ +.......+..|.. +|++++|..+|++++..
T Consensus 222 kA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 222 KAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 99999999998876 37777788888877 59999999999999974
No 218
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.63 E-value=0.018 Score=59.34 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=36.6
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcH
Q 012265 136 QARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKS 186 (467)
Q Consensus 136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~ 186 (467)
.+..++++++...|.+...++..+..+...|+.++|..+|++++.. |.+.
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 3556777777777777777777777777777777888888877777 7764
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.53 E-value=0.00032 Score=60.54 Aligned_cols=112 Identities=17% Similarity=0.095 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccc---CCCC------chHHHHHHHHHHhcCChhHHHHHHHHHHHh------CCC
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDM---FPDS------VMPLLLQAAVLVRENKAGKAEELLGQFAEK------LPD 184 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~---~P~~------~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~------~P~ 184 (467)
..+.....++..+.|+.|+-+.+-++.. +|+. ....++.|..++.+++|..|+..|++++.. .|.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455566677788888888777765543 3332 124567888899999999999999997642 121
Q ss_pred ------------------cHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHH
Q 012265 185 ------------------KSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKE 231 (467)
Q Consensus 185 ------------------~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~ 231 (467)
....+++.+|..|++.|++++|+.+|+.+..-...|.+...|+.+|.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 01136789999999999999999999999765568888888888873
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.40 E-value=0.00064 Score=58.19 Aligned_cols=83 Identities=13% Similarity=-0.042 Sum_probs=50.0
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHhcC---ChhHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHHh
Q 012265 136 QARELVAALPDMFPDSVMPLLLQAAVLVREN---KAGKAEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESLA 211 (467)
Q Consensus 136 ~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~---~~~~A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L~ 211 (467)
.+++.+.+.....|.+....+-.|-.+++.+ +..+++.+|+.+++.. |++...+.|.||-.|.+.|+|++|...++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444455444455556666666666666665 4446777777777766 52222233666777777777777777777
Q ss_pred ccccCCC
Q 012265 212 KIPDIQH 218 (467)
Q Consensus 212 ~~~~~~~ 218 (467)
.++++++
T Consensus 96 ~lL~ieP 102 (152)
T 1pc2_A 96 GLLQTEP 102 (152)
T ss_dssp HHHHHCT
T ss_pred HHHhcCC
Confidence 7766554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.37 E-value=0.0002 Score=67.78 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=83.2
Q ss_pred HHHHHHHHHhccccCCCC--chHHHHHHHHHHh-----cCChhHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHc-CChH
Q 012265 134 MDQARELVAALPDMFPDS--VMPLLLQAAVLVR-----ENKAGKAEELLGQFAEKLPDK-SKIILLARAQVAAAA-NHPF 204 (467)
Q Consensus 134 ~~~A~~~~~~l~~~~P~~--~~~~ll~a~l~~~-----~~~~~~A~~~l~~~l~~~P~~-~~~~~l~Laql~~~~-g~~~ 204 (467)
...|...++++++.+|+. ..++.+.+.+|.. -|+.++|..+|+++++.+|+. ... ++.+|+.++.. |+++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~-~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH-HITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH-HHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHhcCCHH
Confidence 378888999999999994 5578899999988 599999999999999999975 654 58899999885 9999
Q ss_pred HHHHHHhccccCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265 205 IAAESLAKIPDIQHM--PATVATLVALKERAGDIDGAAAVLDSA 246 (467)
Q Consensus 205 ~A~~~L~~~~~~~~~--p~~~~~l~~ly~~~g~~~~A~~~l~~a 246 (467)
+|...|++++..++. |+. .++... +-.+|..+|.++
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~--~lan~~----~q~eA~~LL~~~ 295 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHN--KLLVIL----SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSC--HHHHHH----HHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCCCCh--hHHHHH----HHHHHHHHHHHh
Confidence 999999999987664 653 223322 234565665544
No 222
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.01 E-value=0.2 Score=49.73 Aligned_cols=29 Identities=10% Similarity=-0.105 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
...++||.+|..+|+.++-..++..+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 48 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPF 48 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44588999999999999999988876543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.98 E-value=0.0044 Score=52.96 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHH
Q 012265 118 EAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLL 156 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~l 156 (467)
....|+.++.++..++|+.|++.++.+++..|++..+.-
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 345556666666666666666666666666665555433
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.65 E-value=0.0077 Score=47.72 Aligned_cols=69 Identities=12% Similarity=0.009 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCC-------CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFP-------DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P-------~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
-.+..+..++..++++.|...++.++...+ ....++...|..+.+.|++++|+..+++++...|++...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 456778888888888888888887765431 223345566777778888888888888888888877553
No 225
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.62 E-value=0.14 Score=50.81 Aligned_cols=173 Identities=12% Similarity=0.004 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccccCCC---CchHHHHHHHHH---HhcCChhHHHHHHHHHHHhCCCc-HHHHH-
Q 012265 119 AIYANRVLLLLHANKMDQARELVAALPDMFPD---SVMPLLLQAAVL---VRENKAGKAEELLGQFAEKLPDK-SKIIL- 190 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~---~~~~~ll~a~l~---~~~~~~~~A~~~l~~~l~~~P~~-~~~~~- 190 (467)
...+..+.+|...|+.++-.+++..+....+. .-.+-++...+- ...+..+.=+.++.++++-.-++ -..++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998888876544433 333333322221 11344455566666666421111 11111
Q ss_pred -H--HHHHHHHHcCChHHHHHHHhcccc----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH
Q 012265 191 -L--ARAQVAAAANHPFIAAESLAKIPD----IQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL 260 (467)
Q Consensus 191 -l--~Laql~~~~g~~~~A~~~L~~~~~----~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~ 260 (467)
+ -||.+|+..|+|.+|..++.++.. ++. .-++...-..+|...+++..+...|.+|...-.. ...++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHH
Confidence 2 689999999999999999988863 222 2234555678899999999999999998765432 2233433
Q ss_pred HHHH-HHHHHHHH-HCCChhHHHHHHHHHHHhcC
Q 012265 261 SVIM-QEAASFKL-RHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 261 ~~ll-~~la~~~l-~~g~~~~A~~~le~ll~~~p 292 (467)
...+ ...|.+++ ..++|..|...|-+++..+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 3333 33466778 79999999999988886653
No 226
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.57 E-value=0.24 Score=42.64 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=100.9
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHH----h-------------CCCcHH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAE----K-------------LPDKSK 187 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~----~-------------~P~~~~ 187 (467)
...++.+|.+..|.-.+..+ +........+..+.+.+++..|+..++.+++ . +|.+.+
T Consensus 40 ~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence 56677788888887777654 2345567788888899999999999999983 1 256666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHH-------------cCC-------HHHHHHHHH---
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKER-------------AGD-------IDGAAAVLD--- 244 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~-------------~g~-------~~~A~~~l~--- 244 (467)
.....+|.++.+.|+.++|+..+..-....+-...+-.+ +|.. .|+ +.....+-+
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl--iyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s 192 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL--LLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLS 192 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH--HHTTCCCCCC-----------CHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH--HhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhcc
Confidence 666788999999999999999887543211100001000 0100 011 111111111
Q ss_pred -HHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 245 -SAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 245 -~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
+.+..|.+..|+-..+. ....+..++..|-.++...+|..+...+|-
T Consensus 193 ~~~ikkY~n~iPGiGSY~--va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 193 PSLVKKYMEHVPGIGSYF--ISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHTSTTTHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCCchhHH--HHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 34455555444322222 223467788999999999999999988873
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.42 E-value=0.0099 Score=48.99 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCHHH---HHHHHHhccccC-C-CCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHH
Q 012265 119 AIYANRVLLLLHANKMDQ---ARELVAALPDMF-P-DSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSK 187 (467)
Q Consensus 119 ~l~~n~all~l~~~~~~~---A~~~~~~l~~~~-P-~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~ 187 (467)
...||.|..++++.+... ++.+++.+.+.. | ......++.|.-+++.|+|.+|.+.++.+|+..|++..
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 345555555555555433 555555555444 3 22334444555555555555555555555555555543
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.34 E-value=0.0098 Score=48.99 Aligned_cols=92 Identities=11% Similarity=-0.099 Sum_probs=68.6
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhH---HHHHHHHHHHhC-CCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265 135 DQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGK---AEELLGQFAEKL-PDKSKIILLARAQVAAAANHPFIAAESL 210 (467)
Q Consensus 135 ~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~---A~~~l~~~l~~~-P~~~~~~~l~Laql~~~~g~~~~A~~~L 210 (467)
..+++.+.......+.+....+-.|-.+++.....+ ++.+|+.++... |.......+.||-.+.+.|+|++|...+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555555545566777788888888888877766 999999999887 6433445588999999999999999999
Q ss_pred hccccCCC-ChhHHHHH
Q 012265 211 AKIPDIQH-MPATVATL 226 (467)
Q Consensus 211 ~~~~~~~~-~p~~~~~l 226 (467)
+.++++.+ ++.+..+.
T Consensus 98 ~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHH
Confidence 99998776 55554433
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.16 Score=44.28 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=86.3
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
+.+..|+++.|.++++.+ ++... +-.||...+.+|+++-|..+|.++.+ +..+..||.-.|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~-Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSIT-WERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHH-HHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHH-HHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHH
Confidence 446789999998887765 33333 47899999999999999999999864 335567788889988766
Q ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHhccCChhHHHHHHhcC
Q 012265 241 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTSAHVDVDKAESYEKRL 319 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~~~~d~~kA~~l~~~L 319 (467)
.+-+.+... ++ +.. ....++.+|++++++++|.+.-.. ..+.+ .|-++...+.|+++...+
T Consensus 81 kla~iA~~~------g~--~n~----af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~-~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR------ED--FGS----MLLNTFYNNSTKERSSIFAEGGSL-----PLAYA-VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT------TC--HHH----HHHHHHHHTCHHHHHHHHHHTTCH-----HHHHH-HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC------cc--HHH----HHHHHHHcCCHHHHHHHHHHCCCh-----HHHHH-HHHHcCcHHHHHHHHHHh
Confidence 555554321 11 111 244567899999999999654322 12222 234455567777776554
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.82 E-value=0.027 Score=48.52 Aligned_cols=94 Identities=12% Similarity=0.016 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh---CCCc--H---HHHHHHHHHHHHHcCChHHHHHHHhccccCC----C---
Q 012265 154 PLLLQAAVLVRENKAGKAEELLGQFAEK---LPDK--S---KIILLARAQVAAAANHPFIAAESLAKIPDIQ----H--- 218 (467)
Q Consensus 154 ~~ll~a~l~~~~~~~~~A~~~l~~~l~~---~P~~--~---~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~----~--- 218 (467)
+++-....++..+.|+.|+-+..-++.. +|+- + -.+.+.+|+++..+|+|..|...|++++... .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455566678899999998777765543 3431 1 1134789999999999999999999975311 0
Q ss_pred ----------Ch---------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 219 ----------MP---------ATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 219 ----------~p---------~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
.| ++.+.++.+|...+++++|+.+|+..-
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11 466789999999999999999998643
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.64 E-value=0.054 Score=45.40 Aligned_cols=71 Identities=7% Similarity=-0.002 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHhccccCCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 118 EAIYANRVLLLLHANKM---DQARELVAALPDMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 118 ~~l~~n~all~l~~~~~---~~A~~~~~~l~~~~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
....||.+..++.+.+. ..++.+++.+....|.. .+..++.|.-+++.|+|.+|.+.++.+|+..|++..+
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 35688999999998874 46778888888888854 4455677777899999999999999999999998654
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.54 E-value=0.044 Score=45.32 Aligned_cols=70 Identities=7% Similarity=0.011 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHhccccCCCC-chHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHH
Q 012265 119 AIYANRVLLLLHANKM---DQARELVAALPDMFPDS-VMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKI 188 (467)
Q Consensus 119 ~l~~n~all~l~~~~~---~~A~~~~~~l~~~~P~~-~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~ 188 (467)
...||.|..++++... ..++.+++.+.+..|.. .+.+++.|.-+.+.|+|.+|.+.+..+++..|++..+
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4678889988888774 46778888888777743 4556677777888999999999999999999988654
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.30 E-value=0.5 Score=50.76 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHH
Q 012265 125 VLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQF 178 (467)
Q Consensus 125 all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~ 178 (467)
..+.+..|+++.|.++...+ ++...+...|..+++.++++.|+.+|.++
T Consensus 659 f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44567889999998887655 34566778888888999999999988865
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.18 E-value=0.28 Score=45.69 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=76.9
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
-+++.|..++|+..+..-++.+|.+.. ++..|.|+++-.|+++.|...|+.+..+++.... .+.+|.+.=+-+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~-~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~---~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDAS-LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---GASQLRHLVKAA--- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH---HHHHHHHHHHHH---
Confidence 356788888999999999999998876 4688899999999999999998888766442221 122232110000
Q ss_pred HHHHHHHHHHHH-----hccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 241 AVLDSAIKWWLN-----AMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 241 ~~l~~al~~~~~-----~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
.++.. .+.. ...+++.....+.. +......|+.++|..+-.++++.-|.
T Consensus 79 -~~R~~--vfaG~~~P~~~g~~~~w~~~ll~-Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 79 -QARKD--FAQGAATAKVLGENEELTKSLVS-FNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -HHHHH--HTTSCCCEECCCSCHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -HHHHH--HHcCCCCCCCCCCCHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11111 1111 01122233333443 66667789999999999999887653
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.08 E-value=0.26 Score=45.87 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=80.0
Q ss_pred HHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHH
Q 012265 127 LLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIA 206 (467)
Q Consensus 127 l~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A 206 (467)
-++..|.+++++..+..-++.+|.+.....+...+|+-.|+|+.|.+-|+-+...+|+.... +++|...=+-+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~-----a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG-----ASQLRHLVKAAQA 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH-----HHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999986543 3333211011111
Q ss_pred HHH-Hhcc--ccC-CCChhHHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Q 012265 207 AES-LAKI--PDI-QHMPATVATL--VALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 207 ~~~-L~~~--~~~-~~~p~~~~~l--~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
... |..- ..+ ...+..+..+ +......|+.++|..+-..|.+.
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111 1111 011 1123333333 33344569999998888887653
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.53 E-value=0.25 Score=53.20 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCChHHHHHHHhccc
Q 012265 191 LARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
-.||++++.+|+++.|+.+|.++.
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445555555555555555555543
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.25 Score=49.70 Aligned_cols=99 Identities=13% Similarity=-0.037 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHH-HHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD----IQHMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLS-VIMQ 265 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~----~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~-~ll~ 265 (467)
+.+|.+|...|++++|..+|.++.+ ..+.-.++..++.++...+++..+...+.++....... +++... .+..
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~d~~~~~~lk~ 212 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--GDWERRNRYKT 212 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--CCTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--CCHHHHHHHHH
Confidence 4566666666666666666666543 12233445555666666666666666666665443221 122211 1222
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 266 EAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
..|.+++..++|.+|...|-+++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 23445556666766666666665544
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.17 Score=51.22 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHhcccc----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchH-H
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPD----IQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKL-S 261 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~----~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~-~ 261 (467)
...||.+|...|++.+|..+|..+.. ... .-.++...+.+|...+++..|...+.++....-... .++.+ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~ 218 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHH
Confidence 36789999999999999999988752 111 234566778899999999999999998865432222 22222 2
Q ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 262 VIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 262 ~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
.+....|.++...++|.+|...|.+++...
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 234445788888999999999999998754
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.93 Score=39.44 Aligned_cols=104 Identities=9% Similarity=0.019 Sum_probs=70.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCCh
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHP 203 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~ 203 (467)
+.-+.+..|+++.|.++++.+ ++..-+--.|...+..|+++=|+.+|++. .+.. .|..+|...|+.
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D~~----~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ-----HSFD----KLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TCHH----HHHHHHHHHTCH
T ss_pred HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----CCHH----HHHHHHHHhCCH
Confidence 456778999999999998876 45566778888889999999999998864 3322 234477788888
Q ss_pred HHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 204 FIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 204 ~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
+.-...-+.+.. + +-+...+..+..+|++++++++|.+
T Consensus 77 e~L~kla~iA~~-~---g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQT-R---EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHH-T---TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-C---ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 664333222221 1 1123344556677888888887765
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.08 E-value=0.57 Score=39.61 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=48.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCC
Q 012265 227 VALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGS 293 (467)
Q Consensus 227 ~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd 293 (467)
.+++...++.+.|..+|+.++... ..+.-+|...|.|-.++|+...|..++.+++...|.
T Consensus 67 YA~~~ei~D~d~aR~vy~~a~~~h-------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 67 FAELKAIQEPDDARDYFQMARANC-------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHHHHHCGGGCHHHHHHHHHHC-------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 344566789999999999998751 223567777899999999999999999999998764
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.88 E-value=1 Score=37.68 Aligned_cols=73 Identities=7% Similarity=-0.004 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHhcCChh---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265 151 SVMPLLLQAAVLVRENKAG---KAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV 223 (467)
Q Consensus 151 ~~~~~ll~a~l~~~~~~~~---~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~ 223 (467)
+....+-.|-.+++..+.. +++.+|+.++...|+......+.||--+.+.|+|++|....+.+++..+ +..+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4455666677777766554 7899999999999976666668999999999999999999999998876 44443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.17 Score=54.35 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=79.8
Q ss_pred cCC-HHHHHHHHHhccccCCCCchHHHHHHHHH--HhcC-ChhHHHHHHHHHHHh--------CCCcHH---------HH
Q 012265 131 ANK-MDQARELVAALPDMFPDSVMPLLLQAAVL--VREN-KAGKAEELLGQFAEK--------LPDKSK---------II 189 (467)
Q Consensus 131 ~~~-~~~A~~~~~~l~~~~P~~~~~~ll~a~l~--~~~~-~~~~A~~~l~~~l~~--------~P~~~~---------~~ 189 (467)
+++ ++.|...++++...+|..... +..+.+. ...+ +--+|++++.+.++. .+.+.. .+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 555 688999999999999865432 2222222 2222 233788888777642 122211 12
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSA 246 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~a 246 (467)
...-|..++..|+|+-|+.+-++++...+ ....|..|+.+|..+|+++.|+-.|+..
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 23447778899999999999999987655 5678999999999999999998877754
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.42 E-value=0.62 Score=38.45 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcCCh---hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCC-ChhHH
Q 012265 153 MPLLLQAAVLVRENKA---GKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQH-MPATV 223 (467)
Q Consensus 153 ~~~ll~a~l~~~~~~~---~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~-~p~~~ 223 (467)
...+-.|-.+++..+. .+++.+|+.++...|+......+.||--+.+.|+|+.|....+.++++.+ +..+.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 4455566566666555 47899999999999976555568999999999999999999999998876 44333
No 244
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.39 E-value=0.65 Score=51.35 Aligned_cols=57 Identities=14% Similarity=-0.043 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCChHHHHHHHhcccc-----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPD-----IQHMPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~-----~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
..|...|++.|+.++|..+|..+.+ ..++.-.+..|..-|.+.|+.++|..+|+++.
T Consensus 131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4445555555555555555544321 12233344555555555555555555555554
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.05 E-value=1.1 Score=48.12 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
..++|..++..|+++-|+.+-++++..-|.+-..+ +.||.+|+..|+|+.|+-+|..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW-~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESW-YNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH-HHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHH-HHHHHHHHHhccHHHHHHHHhcCC
Confidence 44667777788899999999999999999887765 888999999999999999988874
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.99 E-value=3.1 Score=40.05 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=57.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc------CCCChhHHHHHHHHHHHc
Q 012265 160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD------IQHMPATVATLVALKERA 233 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~ 233 (467)
.-|++.++|++|+++|... |..+++.|++..|.++-.-+++ +..+......|+.++...
T Consensus 43 ~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 43 ARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3456677777777765432 2223333444444333222221 122334444555555544
Q ss_pred CCHH-HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHH
Q 012265 234 GDID-GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLF 284 (467)
Q Consensus 234 g~~~-~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~l 284 (467)
...+ .=..++++++.|-............++..+|..+.+.+++.+|...|
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4322 23456777887654422111222345666899999999999888776
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.86 E-value=1.6 Score=36.86 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=45.8
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChh
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPA 221 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~ 221 (467)
++...++.++|..+|+.++..+..-.. +++..|+.-+++|+...|..+|.+++...+.|.
T Consensus 69 ~~~ei~D~d~aR~vy~~a~~~hKkFAK-iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 69 ELKAIQEPDDARDYFQMARANCKKFAF-VHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHCGGGCHHHHHHHHHHCTTBHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 444557888888888888877766643 458888888888888888888888887665554
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.80 E-value=3.3 Score=41.59 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh-CC-CcH---HHHHHHHHHHHHHcCChHHHHHHHhccc----cCCCChh----
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAEK-LP-DKS---KIILLARAQVAAAANHPFIAAESLAKIP----DIQHMPA---- 221 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P-~~~---~~~~l~Laql~~~~g~~~~A~~~L~~~~----~~~~~p~---- 221 (467)
...+|.++...|++.+|.+++..+... .- .+. ..+.+...++|+..+++..|...+.++. .....|.
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356788899999999999999987642 21 111 1234777899999999999999999874 2222343
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc--CCHHHHHH
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH--GSIEALVG 299 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~--pd~~ala~ 299 (467)
+....+.++...++|.+|...|..+...+.... +......++..+..+.+-.+....-..++..+.... ++..++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~-d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS-DEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC-CHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 345678888999999999999999887653321 112222333333333333333333344444444433 23445555
Q ss_pred HHHHhccCC
Q 012265 300 LVTTSAHVD 308 (467)
Q Consensus 300 Lv~a~~~~d 308 (467)
|+.+|...+
T Consensus 299 L~k~f~~~~ 307 (445)
T 4b4t_P 299 LVKLFTTNE 307 (445)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhch
Confidence 666664433
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.61 E-value=3.2 Score=47.05 Aligned_cols=136 Identities=14% Similarity=0.039 Sum_probs=92.1
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc-C-----------------------C
Q 012265 162 LVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD-I-----------------------Q 217 (467)
Q Consensus 162 ~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~-~-----------------------~ 217 (467)
+...+.++-|.. ++.-.|.++.. .+.+|.+|+..|++++|..+|+++.. + .
T Consensus 822 l~~~~~~~~~~~----l~~~~~~~~~~-~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 822 LFLFKQYNACMQ----LIGWLNSDPIA-VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHSCTTHHHH----HHHHSCCCHHH-HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHhhhHHHHHH----HhhhccCCcHH-HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence 455566654433 44455666654 48999999999999999999998831 0 0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHH
Q 012265 218 HMPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSV-IMQEAASFKLRHGREEDASHLFEELVKTHGSIEA 296 (467)
Q Consensus 218 ~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~-ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~a 296 (467)
..+.++..++.++.+.|.++.++.+-..|++. ..++++.... +|..+-..++..|+|++|...+-..-...--.+.
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~---~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADAS---KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 02345667889999999999999999988875 2233333332 5555666788999999998777543221112466
Q ss_pred HHHHHHHhc
Q 012265 297 LVGLVTTSA 305 (467)
Q Consensus 297 la~Lv~a~~ 305 (467)
+..||....
T Consensus 974 Lr~LV~~lc 982 (1139)
T 4fhn_B 974 LLDFVNQLT 982 (1139)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.49 E-value=0.58 Score=51.75 Aligned_cols=100 Identities=11% Similarity=-0.025 Sum_probs=66.1
Q ss_pred HHHH-HHHHHHcCCHHHHHHHHHhccc-----cCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCcHHHHHHH
Q 012265 121 YANR-VLLLLHANKMDQARELVAALPD-----MFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEK--LPDKSKIILLA 192 (467)
Q Consensus 121 ~~n~-all~l~~~~~~~A~~~~~~l~~-----~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~--~P~~~~~~~l~ 192 (467)
.||. .-.++..|++++|..++..+.. ..|+.... -....-+++.|+.++|.+++.++.+. .|+... +..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY-NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT--Ynt 205 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY-NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS--YAA 205 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH--HHH
Confidence 3443 3356678888888888876542 34554433 23334467888888888888888775 366543 356
Q ss_pred HHHHHHHcCCh-HHHHHHHhccccCCCChhHH
Q 012265 193 RAQVAAAANHP-FIAAESLAKIPDIQHMPATV 223 (467)
Q Consensus 193 Laql~~~~g~~-~~A~~~L~~~~~~~~~p~~~ 223 (467)
+...+.+.|+. ++|..+|+.+.+-...|..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 66677788874 67788888887655566654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.43 E-value=2.4 Score=48.02 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccC--------------------CC--CchHHHHH-HHHHHhcCChhHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMF--------------------PD--SVMPLLLQ-AAVLVRENKAGKAEELLG 176 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~--------------------P~--~~~~~ll~-a~l~~~~~~~~~A~~~l~ 176 (467)
..|-.|++++..|++++|...|.++..-. +. ....+++. +.++.+.+.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45889999999999999999998764211 10 01122333 345677899999999988
Q ss_pred HHHHhCC-CcHH---HHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHH--------HHH
Q 012265 177 QFAEKLP-DKSK---IILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAA--------VLD 244 (467)
Q Consensus 177 ~~l~~~P-~~~~---~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~--------~l~ 244 (467)
.+++.-+ ++.. .++..+...++..|+|++|...|-...+....-..+..|+..++..|..+.-+. .++
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd 1003 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVD 1003 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHH
Confidence 8887654 3322 133556777889999999999998776544334455555555555554433221 122
Q ss_pred HHHHHH-HHh--ccCCchHHHHHHHHHHHHHHCCChhH-HHHHHHHHHHh
Q 012265 245 SAIKWW-LNA--MTEDNKLSVIMQEAASFKLRHGREED-ASHLFEELVKT 290 (467)
Q Consensus 245 ~al~~~-~~~--~~~~~~~~~ll~~la~~~l~~g~~~~-A~~~le~ll~~ 290 (467)
..+.+- ++. ....+.+-.+ +=.+++..|++.. |..+|+.+.+.
T Consensus 1004 ~IL~~kAr~~~~~~~~p~Yy~i---LYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1004 NLLERKAFQMINVESQPCWYNI---LFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHH---HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccCCCHHHH---hHhhhhccCChHHHHHHHHHHHHHh
Confidence 222211 011 1112333333 3456777888875 55688888765
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.01 E-value=2.3 Score=41.95 Aligned_cols=129 Identities=11% Similarity=0.000 Sum_probs=78.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265 124 RVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAE-ELLGQFAEKLPDKSKIILLARAQVAAAANH 202 (467)
Q Consensus 124 ~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~-~~l~~~l~~~P~~~~~~~l~Laql~~~~g~ 202 (467)
.+.-....|+.+.|...+..++..+-+....-+. ...|-.+. ..|++.. ... ...++..++..|+
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-------~~~w~~~~r~~l~~~~------~~a-~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQFVEPFATALVEDK------VLA-HTAKAEAEIACGR 186 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTTHHHHHHHHHHHH------HHH-HHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-------chhHHHHHHHHHHHHH------HHH-HHHHHHHHHHCCC
Confidence 3444556788899999999888777554321110 11121111 1111111 112 2566778888888
Q ss_pred hHHHHHHHhccccCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHH
Q 012265 203 PFIAAESLAKIPDIQH-MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMT--EDNKLSVIMQE 266 (467)
Q Consensus 203 ~~~A~~~L~~~~~~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~--~~~~~~~ll~~ 266 (467)
+.+|+..+..++..++ +..++..+..+|...|+..+|+..|+.....+....+ ..+.+..++..
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 8888888888876654 5567778888888888888888888887765544221 23444444443
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.31 E-value=11 Score=36.91 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=37.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccc
Q 012265 160 AVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 160 ~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
..+...|++.+|+..+..++..+|-+... +..|..+|...|+..+|+.+|+.+-
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~P~~E~~-~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEHPYREPL-WTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456677777777777777777776654 3666677777777777777777763
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.12 E-value=7.1 Score=38.89 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHcCChHHHHHHHhccccC---CCChhHH----
Q 012265 153 MPLLLQAAVLVRENKAGKAEELLGQFAEKL--PDKSKIILLARAQVAAAANHPFIAAESLAKIPDI---QHMPATV---- 223 (467)
Q Consensus 153 ~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~--P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~---~~~p~~~---- 223 (467)
.+..-+|..+...|++++|.++|.++.... ++....+.+...++++..+++..+...+.++..+ ..++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 355677888888999999999988877653 3333345578888888999999998888887532 2234332
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 224 ATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 224 ~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
...+.++...+++..|...|-.+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 23355566678888888888776543
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.89 E-value=8.1 Score=36.74 Aligned_cols=134 Identities=17% Similarity=0.093 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCC
Q 012265 123 NRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANH 202 (467)
Q Consensus 123 n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~ 202 (467)
++..-.+..|++=+|.+.+.. .+.-|++++++++|+++|... |..+++.|+
T Consensus 18 ~rl~~~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q 68 (312)
T 2wpv_A 18 QRFENKIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQG---------------ALSFLKAKQ 68 (312)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred HHHHHHhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCC
Confidence 344455566666555555443 234467788888888876543 233444555
Q ss_pred hHHHHHHHhcccc------CCCChhHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCC
Q 012265 203 PFIAAESLAKIPD------IQHMPATVATLVALKERAGDID-GAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHG 275 (467)
Q Consensus 203 ~~~A~~~L~~~~~------~~~~p~~~~~l~~ly~~~g~~~-~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g 275 (467)
+..|..+-.-+++ ...+......++.++......+ .=..++++++.|-............++..+|..+...|
T Consensus 69 ~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~ 148 (312)
T 2wpv_A 69 GGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGD 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcC
Confidence 5555554222221 2224455566666665543222 33567778887754432211222345777899999999
Q ss_pred ChhHHHHHHH
Q 012265 276 REEDASHLFE 285 (467)
Q Consensus 276 ~~~~A~~~le 285 (467)
++.+|..+|-
T Consensus 149 ~~~~A~~H~i 158 (312)
T 2wpv_A 149 FVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988773
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.07 E-value=9.5 Score=41.90 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVA 197 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~ 197 (467)
+.+..+++++-+++- ++...+..++....... .+.+..|.+++-.|+.+-...++.-+.+...++... .+.++--+
T Consensus 457 AaLGLGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR-~aalgLGl 534 (963)
T 4ady_A 457 ASLGIGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITR-GLAVGLAL 534 (963)
T ss_dssp HHHHHHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHH-HHHHHHHh
Confidence 444566666655553 34444554443221111 233445555556666554445555444433222111 12223233
Q ss_pred HHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012265 198 AAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAI 247 (467)
Q Consensus 198 ~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al 247 (467)
+..|+.+.+..+++.+..... ..+....++..|...|+......+|..+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 345677666666666543221 22334456666777787765555666544
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.63 E-value=29 Score=38.15 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=81.8
Q ss_pred HHHcCCHHHHHHHHHhccccCCCCchHHHHHHHH----HHhcCChhHHHHHHHHHHHhCCC------cH---HHHHHHHH
Q 012265 128 LLHANKMDQARELVAALPDMFPDSVMPLLLQAAV----LVRENKAGKAEELLGQFAEKLPD------KS---KIILLARA 194 (467)
Q Consensus 128 ~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l----~~~~~~~~~A~~~l~~~l~~~P~------~~---~~~~l~La 194 (467)
.++.|..+++...+...+-....+.. ..-.+++ ++..|...+++.+|..++..... .. ..+.+.||
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~-~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSR-FIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCH-HHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34556777777777776542211111 1111222 24455556788888888865420 11 12337888
Q ss_pred HHHHHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 012265 195 QVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFK 271 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~ 271 (467)
.+|+..++ +++...|..++..+. .......|+.+|...|+.+....++.-+.+ . .+..+... ..+|.-+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e----~--~~e~vrR~-aalgLGl 534 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE----T--QHGNITRG-LAVGLAL 534 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH----C--SCHHHHHH-HHHHHHH
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc----c--CcHHHHHH-HHHHHHh
Confidence 88887775 456666666653222 112334677788888887766666665442 1 11222111 1133344
Q ss_pred HHCCChhHHHHHHHHHHH
Q 012265 272 LRHGREEDASHLFEELVK 289 (467)
Q Consensus 272 l~~g~~~~A~~~le~ll~ 289 (467)
+..|+.+.+-.+.+.+..
T Consensus 535 l~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 535 INYGRQELADDLITKMLA 552 (963)
T ss_dssp HTTTCGGGGHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHh
Confidence 566777766666665554
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.06 E-value=7 Score=39.86 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHhcccc--CC-CCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 188 IILLARAQVAAAANHPFIAAESLAKIPD--IQ-HMP---ATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 188 ~~~l~Laql~~~~g~~~~A~~~L~~~~~--~~-~~p---~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
.+...+.+.|+..+.|++|...+.+..- .. .+. .+.+.+|.++.-+++|.+|...|..|+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3457889999999999999999998852 11 122 2345679999999999999999998875
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.70 E-value=18 Score=28.13 Aligned_cols=74 Identities=14% Similarity=0.067 Sum_probs=53.7
Q ss_pred CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
...++|.. +-..++..++ .+.+.++...-++++|+|++|...++... .|++...++..--+.|-.+++...+..
T Consensus 21 H~HqEA~t-IAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANC-IAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHH-HHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34467754 4567888888 55555777888899999999999988765 677766666666677877777666643
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.47 E-value=52 Score=34.31 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHH
Q 012265 111 RLSPKQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIIL 190 (467)
Q Consensus 111 kL~~~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~ 190 (467)
.++..+...+....+.-++..+...++...+.......+ +....-..+...++.|++..|...+..+......... +.
T Consensus 245 ~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r-~~ 322 (618)
T 1qsa_A 245 QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE-WR 322 (618)
T ss_dssp TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHh-HH
Confidence 456666655554445444555534455555555443333 3333333444456779999998888765443223333 45
Q ss_pred HHHHHHHHHcCChHHHHHHHhccc
Q 012265 191 LARAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~ 214 (467)
+.+|..+...|+.++|...|+.+.
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 889999999999999999888764
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.00 E-value=1.6 Score=44.64 Aligned_cols=69 Identities=6% Similarity=0.017 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcC
Q 012265 222 TVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHG 292 (467)
Q Consensus 222 ~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~p 292 (467)
++..+...|+..+.++.|..++.++. ++.....+......+.-+|.++.-.++|.+|...|..++..-|
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 56778999999999999999999874 2111112234444556679999999999999999999987654
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.83 E-value=18 Score=28.14 Aligned_cols=75 Identities=16% Similarity=0.023 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 166 NKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 166 ~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
...++|.. +-..++..++ .+.+.++...-++++|+|++|...++... .|++...++..--+.|-.+++...+..
T Consensus 20 H~HqEA~t-IAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALC-IAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHH-HHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34467754 4567888888 55556777888899999999998887765 677776666666678888877776644
Q ss_pred H
Q 012265 246 A 246 (467)
Q Consensus 246 a 246 (467)
.
T Consensus 94 l 94 (115)
T 2uwj_G 94 L 94 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.37 E-value=53 Score=31.05 Aligned_cols=27 Identities=7% Similarity=-0.153 Sum_probs=19.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHh
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVKT 290 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~~ 290 (467)
+.+...-|+..|+...|..+|+...+.
T Consensus 191 ~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 191 FSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344455578899999999888776543
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.32 E-value=83 Score=32.80 Aligned_cols=119 Identities=16% Similarity=0.084 Sum_probs=65.5
Q ss_pred hcCChhHHHHHHHHHHHhCCCcHHHHHH---HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcCCHHHHH
Q 012265 164 RENKAGKAEELLGQFAEKLPDKSKIILL---ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAGDIDGAA 240 (467)
Q Consensus 164 ~~~~~~~A~~~l~~~l~~~P~~~~~~~l---~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g~~~~A~ 240 (467)
..++.+.|...+.......+-+...... .+|.-++..+...++...+........+..+....+...++.|+.+.|.
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHH
Confidence 3446677877777765443322222111 2222222334355666666665432233333334444556678888888
Q ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 241 AVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 241 ~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
..|..+.. .........+.+|..+...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~-------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPM-------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCT-------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccc-------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77765422 1111112233468888888999889888888875
No 265
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.64 E-value=64 Score=35.55 Aligned_cols=83 Identities=10% Similarity=-0.070 Sum_probs=53.9
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc-C--C-C------------------
Q 012265 161 VLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD-I--Q-H------------------ 218 (467)
Q Consensus 161 l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~-~--~-~------------------ 218 (467)
.+...+.++- ..+++.-.|.++.. .|.+|++|+..|++++|..+|+++-. + . .
T Consensus 819 ~L~~~~~~~~----a~eL~~~~~~t~~~-~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 819 KLFLFKQYNA----CMQLIGWLNSDPIA-VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHTTCHHH----HHHHGGGCCSSHHH-HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHhcHHHH----HHHHHhhcCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccccc
Confidence 3445666653 34466667777654 58999999999999999999998842 1 0 0
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 219 --MPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 219 --~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
..+++..++.++.+.+-++.++.+-+-|++
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 012344555666666666666666555554
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.07 E-value=82 Score=30.07 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=39.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHH------------HHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHH
Q 012265 219 MPATVATLVALKERAGDIDGAAAVL------------DSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEE 286 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~~~~A~~~l------------~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ 286 (467)
+|.+...++.+|.+.+++.+|...| +-..+|+.... +.....++.+...-|+..++...|..+|+.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5666666666666666666665443 12233433322 223333455556667889999999886655
Q ss_pred HHH
Q 012265 287 LVK 289 (467)
Q Consensus 287 ll~ 289 (467)
-.+
T Consensus 213 f~~ 215 (336)
T 3lpz_A 213 FTS 215 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=68.25 E-value=17 Score=30.22 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=28.6
Q ss_pred HHHcCChHHHHHHHhcc-ccCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 197 AAAANHPFIAAESLAKI-PDIQHMPATVATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 197 ~~~~g~~~~A~~~L~~~-~~~~~~p~~~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
+..+|+.++-..++..+ .+...+|.++..++..|.+.|+..+|..++.+|-+
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33455555555555553 22333566666666666666666666666666543
No 268
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=65.93 E-value=65 Score=27.76 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=31.0
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 012265 266 EAASFKLRHGREEDASHLFEELVKTHGSIEALVGLVTTS 304 (467)
Q Consensus 266 ~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~Lv~a~ 304 (467)
.+|.++.+.|+.+||+..|..-...++=..++-+|+..-
T Consensus 119 l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN 157 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLEN 157 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhc
Confidence 368889999999999999999888877655666666543
No 269
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=60.70 E-value=39 Score=28.49 Aligned_cols=22 Identities=14% Similarity=-0.099 Sum_probs=11.9
Q ss_pred HHHHHHHcCChHHHHHHHhccc
Q 012265 193 RAQVAAAANHPFIAAESLAKIP 214 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~ 214 (467)
+-.||+.+|++++|+.+=..+-
T Consensus 79 ~YWIyiGRg~~~eAlDiA~~L~ 100 (161)
T 2ynq_A 79 LYWIYIGRSQSEEALELARTIE 100 (161)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHhcC
Confidence 3445555666666655554443
No 270
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.79 E-value=71 Score=31.10 Aligned_cols=94 Identities=6% Similarity=-0.125 Sum_probs=50.8
Q ss_pred HHHHHcCChHHHHHHHhccccC---------------C-CCh--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 012265 195 QVAAAANHPFIAAESLAKIPDI---------------Q-HMP--ATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTE 256 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~~---------------~-~~p--~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~ 256 (467)
.+.....+.++|+..|+++... . ... -+...++.+|...|+.++|...++++-.........
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 3444556677777777655310 0 011 123456777888888888888888776554432222
Q ss_pred CchH-HHHHHHHHHHHHHCCChhHHHHHHHHHH
Q 012265 257 DNKL-SVIMQEAASFKLRHGREEDASHLFEELV 288 (467)
Q Consensus 257 ~~~~-~~ll~~la~~~l~~g~~~~A~~~le~ll 288 (467)
++.. ..++...+..+...+++..+...+-..+
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222 2233334555566777766555444444
No 271
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=53.88 E-value=1.5e+02 Score=29.03 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=12.1
Q ss_pred ccCChhHHHHHHhcCCC
Q 012265 305 AHVDVDKAESYEKRLKP 321 (467)
Q Consensus 305 ~~~d~~kA~~l~~~L~~ 321 (467)
++..++.|.+|+..+|.
T Consensus 348 ~qG~l~~A~~yL~~lp~ 364 (399)
T 2pm7_A 348 STGNFELATEFLNSLPS 364 (399)
T ss_dssp TTTCHHHHHHHHHHSCT
T ss_pred hCCCHHHHHHHHHhCCC
Confidence 46677778888777764
No 272
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=50.07 E-value=73 Score=32.21 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHHhccccCC-CChhHHHHHHHHHHH
Q 012265 157 LQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESLAKIPDIQ-HMPATVATLVALKER 232 (467)
Q Consensus 157 l~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~~~-~~p~~~~~l~~ly~~ 232 (467)
..|.+.--...+..|...|.+++...|++... +..||-++..+|+.-+|+-.|-+.+-.. +.+.....|..++..
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~-~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQP-YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH-HHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 34555545667788999999999999988654 5788888888888888888887776433 355555555555543
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.55 E-value=67 Score=28.53 Aligned_cols=38 Identities=3% Similarity=-0.095 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHH
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFA 69 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~ 69 (467)
.|.+|.-.|....|.+++|.+++++++...+++..+..
T Consensus 115 llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~ 152 (235)
T 3bu8_A 115 LVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRN 152 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHH
Confidence 56677777888999999999999999997666655554
No 274
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=47.27 E-value=29 Score=23.71 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHH
Q 012265 167 KAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAA 207 (467)
Q Consensus 167 ~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~ 207 (467)
..++|.. +-.+++..++..+.+.+....-+.++|+|++|+
T Consensus 21 cH~EA~t-IA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAAS-IADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHH-HHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3456653 345777777765555567777778888888875
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=46.23 E-value=48 Score=23.98 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHH
Q 012265 33 IAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 71 (467)
Q Consensus 33 i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va 71 (467)
-.+|+|..+..+|++++|...|-+++...|.-..++-+.
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 358899999999999999998888888776544444443
No 276
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.71 E-value=2.2e+02 Score=27.55 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCChHHHHHHHhcc
Q 012265 191 LARAQVAAAANHPFIAAESLAKI 213 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~ 213 (467)
+.++++|+..|+.++|...++++
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 44455555555555555555555
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=45.68 E-value=36 Score=24.64 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHH
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGSIEALVG 299 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~ 299 (467)
+|..++..|++++|+..|-.++...|.+..+.+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 688899999999999999999999887544443
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.36 E-value=1e+02 Score=25.92 Aligned_cols=61 Identities=7% Similarity=-0.034 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCCCh--------hHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQHMP--------ATVA--TLVALKERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~p--------~~~~--~l~~ly~~~g~~~~A~~~l~~al~~~~ 251 (467)
+.-+..++..|+|-+|-++|+.+......+ +++. ..+....+.|+...|..+|.+++....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455667778888888888888886432222 2322 234455678999999999999987653
No 279
>2kig_A Inositol polyphosphate 5-phosphatase II isoform; OCRL, INPP5B, clathrin, endocytosis, hydrolase; NMR {Mus musculus}
Probab=41.09 E-value=13 Score=30.30 Aligned_cols=19 Identities=42% Similarity=0.948 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCC-CCCCCccccc
Q 012265 376 GFDPANPGPPPDP-ERWLPKRERS 398 (467)
Q Consensus 376 ~~dp~~~~~~pDP-ERWLP~~eRs 398 (467)
+||| ++||| .+||-++-++
T Consensus 136 G~sp----~tpdp~f~WLSry~~~ 155 (161)
T 2kig_A 136 GFDP----ETRDPEFEWLSRHTCA 155 (161)
T ss_dssp TTCT----TCCCCCCTTGGGCCCS
T ss_pred CCCC----CCCCcccchhhhhccc
Confidence 7898 58998 6999865443
No 280
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.01 E-value=1.7e+02 Score=27.59 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
.++.||-+...|++++|+..|+.+|..
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 131 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLS 131 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 678999999999999999999998865
No 281
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=40.79 E-value=53 Score=24.34 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=30.5
Q ss_pred CChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 21 FAEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 21 ~~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
+++-.-..+-+.-.++.|.-.-..|++++|+.+|...+..
T Consensus 9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444434445566788999999999999999999988863
No 282
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.68 E-value=1.2e+02 Score=22.89 Aligned_cols=66 Identities=21% Similarity=0.104 Sum_probs=42.9
Q ss_pred HHHHHHCCChhHHHHHHHHHHHhcCC--H---HHHHHHHHHhc---cCCh-----hHHHHHHhcCCCCCCCCCcChhhhh
Q 012265 268 ASFKLRHGREEDASHLFEELVKTHGS--I---EALVGLVTTSA---HVDV-----DKAESYEKRLKPLPGLNGVDVDSLE 334 (467)
Q Consensus 268 a~~~l~~g~~~~A~~~le~ll~~~pd--~---~ala~Lv~a~~---~~d~-----~kA~~l~~~L~~~~~~~~vDvd~Le 334 (467)
|..++..|+|=+|.+++|.+-...++ . ..++.+..++- ..+. .+|..+++..|+ .-.+|||+.|.
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~a~~ll~~a~~~L~~~~~--~~~gidv~~L~ 85 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRPGLRNLRKAEARLEGLPC--PLMGLDWRSLL 85 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCS--SBTTBCHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCC--ccCCcCHHHHH
Confidence 56677779999999999999988754 2 23444444442 2333 344455444444 24699999986
Q ss_pred h
Q 012265 335 K 335 (467)
Q Consensus 335 ~ 335 (467)
.
T Consensus 86 ~ 86 (94)
T 2cwy_A 86 Q 86 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 283
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=39.54 E-value=26 Score=25.77 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
.-.+.+|.=|...|+|+.|...|+.++..
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34578999999999999999999999864
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.24 E-value=2e+02 Score=25.20 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhc
Q 012265 234 GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTH 291 (467)
Q Consensus 234 g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~ 291 (467)
+...++..+|.-+... ..+ ..+..++...|.++...|++.+|..+|+..++..
T Consensus 93 ~~~~~p~~if~~L~~~---~IG--~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNK---GIG--TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHH---TSS--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHC---CCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3355667777655432 222 3344556666777888888888888888888765
No 285
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=38.38 E-value=1.7e+02 Score=24.26 Aligned_cols=143 Identities=16% Similarity=0.072 Sum_probs=76.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhhccCCCChhHHHHhhhhhhhhhhhHHHHHHHhhcCCCH
Q 012265 35 VQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVALKGPKDVNDSLKKLDRIKEKDMQNFQLARVLDLRLSP 114 (467)
Q Consensus 35 ~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~kL~~ 114 (467)
+.-|--+...|..++-.++..+..+..+-+..-+++- |++-.-+=.-++..+..+....+. .
T Consensus 11 LmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~IC--NiiD~a~C~y~v~vLd~IGkiFDi-------s--------- 72 (172)
T 1wy6_A 11 LMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFIC--NLLESIDCRYMFQVLDKIGSYFDL-------D--------- 72 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHH--HHHHHCCHHHHHHHHHHHGGGSCG-------G---------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeee--ecchhhchhHHHHHHHHHhhhcCc-------H---------
Confidence 3456667889999999999999998776555545432 543221111234444444332111 0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 012265 115 KQREAIYANRVLLLLHANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARA 194 (467)
Q Consensus 115 ~q~~~l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~La 194 (467)
..|++......+-.+- -.+ ...-+.-..++.+|+.++-.+++..++...+-++..+ +.+|
T Consensus 73 ---------------~C~NlKrVi~C~~~~n---~~s-e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l-~kia 132 (172)
T 1wy6_A 73 ---------------KCQNLKSVVECGVINN---TLN-EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASIL-VAIA 132 (172)
T ss_dssp ---------------GCSCTHHHHHHHHHTT---CCC-HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHH-HHHH
T ss_pred ---------------hhhcHHHHHHHHHHhc---chH-HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHH-HHHH
Confidence 0111111222222111 011 1111222345667777777777777655555455554 7778
Q ss_pred HHHHHcCChHHHHHHHhcccc
Q 012265 195 QVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 195 ql~~~~g~~~~A~~~L~~~~~ 215 (467)
..|.+.|+..+|-+++.++-+
T Consensus 133 ~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 133 NALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHHHH
Confidence 888888888888777777653
No 286
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=36.70 E-value=5.3e+02 Score=29.47 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=36.3
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHHhhhhh
Q 012265 22 AEDDIEIELAPIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAVNNLVA 77 (467)
Q Consensus 22 ~~ee~~~El~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~nnl~~ 77 (467)
..|++.++|....+ ..+- .-+.+++..+|+.++...|++..+++....++.+
T Consensus 1102 ~~~~~~e~~rd~~~--~~~~--k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1102 NADDYAESFRDFQC--SQIV--KCELEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp CHHHHHHHHHHHHH--HHHT--TSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--HHHh--hcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 45566666665443 3222 2246889999999999999999998866666543
No 287
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.95 E-value=51 Score=32.98 Aligned_cols=64 Identities=5% Similarity=-0.054 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccc--------cCCCCc--hHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCc
Q 012265 122 ANRVLLLLHANKMDQARELVAALPD--------MFPDSV--MPLLLQAAVLVRENKAGKAEELLGQFAEK-LPDK 185 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~--------~~P~~~--~~~ll~a~l~~~~~~~~~A~~~l~~~l~~-~P~~ 185 (467)
.+.+.+|+..|+.+.|..++..+.. .+|.+. ...++.|.++..+++|.+|...|..++.. .|.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3467789999999999999886543 334332 34568889999999999999999999998 6654
No 288
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=35.73 E-value=1.5e+02 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 34 AVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 34 ~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
.++.||-+...|++++|+..|+.+|..
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 688999999999999999999999865
No 289
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.68 E-value=1.6e+02 Score=24.78 Aligned_cols=59 Identities=5% Similarity=-0.016 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccccCCCC-chHHHHHH--------HHHHhcCChhHHHHHHHHHHH
Q 012265 122 ANRVLLLLHANKMDQARELVAALPDMFPDS-VMPLLLQA--------AVLVRENKAGKAEELLGQFAE 180 (467)
Q Consensus 122 ~n~all~l~~~~~~~A~~~~~~l~~~~P~~-~~~~ll~a--------~l~~~~~~~~~A~~~l~~~l~ 180 (467)
+..++.++..|.|=+|.++++.+-...++. ..-.++++ ..+.+.|+..-|..++.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777888899999999999988776554 11112222 122455666666666665544
No 290
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=33.57 E-value=1.5e+02 Score=22.63 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.3
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHhcCCHHHHHH
Q 012265 267 AASFKLRHGREEDASHLFEELVKTHGSIEALVG 299 (467)
Q Consensus 267 la~~~l~~g~~~~A~~~le~ll~~~pd~~ala~ 299 (467)
+|..++..|+++.|+.+|-.++...|.+..+..
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~ 58 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 58 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 688899999999999999999998887644443
No 291
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=33.20 E-value=2.6e+02 Score=24.76 Aligned_cols=93 Identities=13% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHH-----HhcCCHHHHHHHHH
Q 012265 228 ALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELV-----KTHGSIEALVGLVT 302 (467)
Q Consensus 228 ~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll-----~~~pd~~ala~Lv~ 302 (467)
.+..+.++.++=..+..+...+|.+..++.+....++.-.--+++.+|+..+-...++.+. ..+|-......+..
T Consensus 64 ~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~ 143 (229)
T 4b0z_A 64 LVSIQTCDIESFARYASQVIPFYHDSLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQ 143 (229)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHH
Confidence 3444566666666666665555543222222211111111222345666655444444332 11121233344555
Q ss_pred HhccCChhHHHHHHhcCC
Q 012265 303 TSAHVDVDKAESYEKRLK 320 (467)
Q Consensus 303 a~~~~d~~kA~~l~~~L~ 320 (467)
+....+..+.-.+.+..|
T Consensus 144 al~~GnY~kff~l~~~~p 161 (229)
T 4b0z_A 144 NVMEGAFDKVASMIRSCN 161 (229)
T ss_dssp HHHTTCHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHhcCc
Confidence 666666666666665554
No 292
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.10 E-value=1.6e+02 Score=29.66 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHhccccCCCChhH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 190 LLARAQVAAAANHPFIAAESLAKIPDIQHMPAT-VATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 190 ~l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~-~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
.+.||.+..-...++.|...|.++..+.+.-|. +..|+.++...|+.-+|+-+|-+++.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 366777777777788888888888777666666 45677777777777777766666653
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.95 E-value=2.3e+02 Score=25.10 Aligned_cols=47 Identities=11% Similarity=-0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCChHHHHHHHhccccCCCChh-HHHHHHHHHHHcCCHH
Q 012265 191 LARAQVAAAANHPFIAAESLAKIPDIQHMPA-TVATLVALKERAGDID 237 (467)
Q Consensus 191 l~Laql~~~~g~~~~A~~~L~~~~~~~~~p~-~~~~l~~ly~~~g~~~ 237 (467)
...+-++++.|.|++|..+|+++..-...+. +...|..+-.+.+.+.
T Consensus 118 ~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H 165 (235)
T 3bu8_A 118 EAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAH 165 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCccc
Confidence 3456688899999999999999987544343 4555666665555444
No 294
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=28.89 E-value=1.4e+02 Score=22.68 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHHH
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVAV 72 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va~ 72 (467)
.-.+++|..+..+|++++|...|-+++...|.-..++-+..
T Consensus 21 l~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 21 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44689999999999999999977777777665444444443
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.39 E-value=1.1e+02 Score=22.48 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHhcc
Q 012265 30 LAPIAVQLAYVQQLLGNTQEAFGAYTDIIKR 60 (467)
Q Consensus 30 l~~i~~qlA~v~~~~G~~~eA~~~y~~~l~~ 60 (467)
-+.-.++.|.-.-..|++++|+.+|...+..
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444677888889999999999999988753
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.64 E-value=2.4e+02 Score=24.59 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCC
Q 012265 110 LRLSPKQREAIYANRVLLLLHANK 133 (467)
Q Consensus 110 ~kL~~~q~~~l~~n~all~l~~~~ 133 (467)
.+++..|...++.-+++.-+..|+
T Consensus 56 ~~~~a~~~k~i~icQfL~RI~eG~ 79 (211)
T 3bqo_A 56 SSLTACQLRTIYICQFLTRIAAGK 79 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccchHHHHHHHHHHHcCC
Confidence 466777777777777777776665
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.56 E-value=2.8e+02 Score=23.02 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHHHHhcccc--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012265 204 FIAAESLAKIPD--IQH-MPATVATLVALKERAGDIDGAAAVLDSAIKW 249 (467)
Q Consensus 204 ~~A~~~L~~~~~--~~~-~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~ 249 (467)
+++..+|.-+.. +.. ...++...+.++...|++.+|..+|+..++.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 447777777654 222 4456677899999999999999999999863
No 298
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=25.10 E-value=1.9 Score=43.76 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHHHH
Q 012265 219 MPATVATLVALKERAGDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEALV 298 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~ala 298 (467)
.|.+|+.|+..++..++..+|+..|-+| +|+.. +.++.....+.|.+++-+.++.-+.+.-.+..+-.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---------~Dps~---y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDt 120 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSS---YMEVVQAANTSGNWEELVKYLQMARKKARESYVET 120 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---------SCCCS---SSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---------CChHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHH
Q ss_pred HHHHHhccCChhHHHHHHhcCCCCCC-CCCcChhhhhh
Q 012265 299 GLVTTSAHVDVDKAESYEKRLKPLPG-LNGVDVDSLEK 335 (467)
Q Consensus 299 ~Lv~a~~~~d~~kA~~l~~~L~~~~~-~~~vDvd~Le~ 335 (467)
.|+.||+..| +|..+++ |++.++..++.
T Consensus 121 eLi~ayAk~~---------rL~elEefl~~~N~A~iq~ 149 (624)
T 3lvg_A 121 ELIFALAKTN---------RLAELEEFINGPNNAHIQQ 149 (624)
T ss_dssp HHHHHHHTSC---------SSSTTTSTTSCCSSSCTHH
T ss_pred HHHHHHHhhC---------cHHHHHHHHcCCCcccHHH
No 299
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.02 E-value=1.1e+02 Score=26.72 Aligned_cols=40 Identities=20% Similarity=0.041 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhccCCCchHHHHHH
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIKRNLADESSFAVA 71 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~~~p~d~~~~~va 71 (467)
.|.+|.--|....|.+++|.++++.++...+++..+...+
T Consensus 118 Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 118 LIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4778888899999999999999999999887777666533
No 300
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.70 E-value=4.8e+02 Score=25.17 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 219 MPATVATLVALKERA--GDIDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~--g~~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
.|-.+..|+.+-... .....++.+|.+|+..-+..-.+..-+. ... +|.++.+++++.+|+...-.+-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYP-Yty-lgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYP-YTY-LGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHH-HHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccc-hhh-hhhhhhhcchHHHHHHHHHHHHH
Confidence 565566666655542 2223477888888765444333333343 233 67899999999999987766543
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.07 E-value=2.8e+02 Score=21.97 Aligned_cols=42 Identities=7% Similarity=-0.084 Sum_probs=28.0
Q ss_pred HHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHcC
Q 012265 193 RAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERAG 234 (467)
Q Consensus 193 Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~g 234 (467)
+..=|+..|+.++|+.+++.+..-.+++.++...+..-+..+
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~ 54 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLEST 54 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCC
Confidence 445667789999999999987532346666665555555543
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.80 E-value=1e+02 Score=22.88 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHhc
Q 012265 32 PIAVQLAYVQQLLGNTQEAFGAYTDIIK 59 (467)
Q Consensus 32 ~i~~qlA~v~~~~G~~~eA~~~y~~~l~ 59 (467)
.-.+..|.-.-..|++++|+.+|...+.
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4457788888999999999999998875
No 303
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=22.78 E-value=3.7e+02 Score=23.19 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccccCCCCch--HHHHHHHHHHhcCChh-HHHHHHHHHHH--------hC--CCcH
Q 012265 120 IYANRVLLLLHANKMDQARELVAALPDMFPDSVM--PLLLQAAVLVRENKAG-KAEELLGQFAE--------KL--PDKS 186 (467)
Q Consensus 120 l~~n~all~l~~~~~~~A~~~~~~l~~~~P~~~~--~~ll~a~l~~~~~~~~-~A~~~l~~~l~--------~~--P~~~ 186 (467)
-....+++.++.|+.++|..++.......-.... ..++.+ ..+.. ++ -.++- .. |...
T Consensus 37 ~DI~~AR~aL~~G~~~~Ak~lL~~A~~~L~~a~~d~~~f~ka-----~~k~~~~~----~~~iPI~~~l~v~edf~~tpe 107 (191)
T 3dza_A 37 RDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKT-----DAKAKMIA----DRYVIINASIALSEDYVATPE 107 (191)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCHHHHHTTBCT-----TCCCCSSS----SCEEEEEEEEEEECCCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhchHHHHhh-----cccCCCCC----CceEEEcceeeeeccccCChH
Confidence 3456799999999999999998865432211000 000000 00000 00 00000 00 1111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHhccc-cCCC----Ch--hH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012265 187 KIILLARAQVAAAANHPFIAAESLAKIP-DIQH----MP--AT--VATLVALKERAGDIDGAAAVLDSAIK 248 (467)
Q Consensus 187 ~~~~l~Laql~~~~g~~~~A~~~L~~~~-~~~~----~p--~~--~~~l~~ly~~~g~~~~A~~~l~~al~ 248 (467)
....+.-|+-+++.|+...|.+.|+-+. ++.+ .| .. ....+.-++..|++.+|-..|..+..
T Consensus 108 K~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 108 KESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1223677888999999999999998774 2221 12 11 22456777788999999988888764
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.20 E-value=3.3e+02 Score=22.38 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=28.6
Q ss_pred HHHHHHHHcCChHHHHHHHhccccCCCChhHHHHHHHHHHHc
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPDIQHMPATVATLVALKERA 233 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~~~~~p~~~~~l~~ly~~~ 233 (467)
.+..=|+..|+.++|+.+++.+..-.+++.++...+..-+..
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~ 55 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLES 55 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 345567778999999999998753334666666655555554
No 305
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.11 E-value=5.7e+02 Score=25.14 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 219 MPATVATLVALKERAGD--IDGAAAVLDSAIKWWLNAMTEDNKLSVIMQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 219 ~p~~~~~l~~ly~~~g~--~~~A~~~l~~al~~~~~~~~~~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
.|-.+..|+.|-...-- ...++.+|.+|+..-+..-.+..-+. ... +|.++.+++++.+|+...-.+-.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYP-YtY-lgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYP-YMY-LAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHH-HHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccc-eee-cchhhhhcchHHHHHHHHHHHHH
Confidence 55555566655544211 12477778877765443333333343 233 68899999999999876655443
No 306
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=21.94 E-value=2.1e+02 Score=24.78 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHHcCChHHHHHHHhcccc
Q 012265 155 LLLQAAVLVRENKAGKAEELLGQFAE-------KLPDKSKIILLARAQVAAAANHPFIAAESLAKIPD 215 (467)
Q Consensus 155 ~ll~a~l~~~~~~~~~A~~~l~~~l~-------~~P~~~~~~~l~Laql~~~~g~~~~A~~~L~~~~~ 215 (467)
.+-.|.-+++.|+.+.|.+.|+-+=. .-|=....-.+..|..++..|+|.+|-..|..+.+
T Consensus 111 AI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 111 AIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 46677778999999999998874310 01211111236789999999999999999998864
No 307
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.89 E-value=5.8e+02 Score=25.16 Aligned_cols=121 Identities=7% Similarity=-0.010 Sum_probs=67.4
Q ss_pred HHHHHHHHcCChHHHHHHHhcccc------CCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhcc---C
Q 012265 192 ARAQVAAAANHPFIAAESLAKIPD------IQHMP-----ATVATLVALKERAGDIDGAAAVLDSAIKW-WLNAMT---E 256 (467)
Q Consensus 192 ~Laql~~~~g~~~~A~~~L~~~~~------~~~~p-----~~~~~l~~ly~~~g~~~~A~~~l~~al~~-~~~~~~---~ 256 (467)
.|-.+|.+.|+..-|..++..+.. ....| .+.+.+|.++..++++.+|...|..|... ...... .
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~ 260 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAI 260 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhh
Confidence 455788899999999888887632 11112 23567889999999999999999999876 432100 0
Q ss_pred CchHHHHHHHHHHHHHHCCChhHHHHHHHHHHHhcCCHHH-HHHHHHHhccCChhHHHHH
Q 012265 257 DNKLSVIMQEAASFKLRHGREEDASHLFEELVKTHGSIEA-LVGLVTTSAHVDVDKAESY 315 (467)
Q Consensus 257 ~~~~~~ll~~la~~~l~~g~~~~A~~~le~ll~~~pd~~a-la~Lv~a~~~~d~~kA~~l 315 (467)
..+...++.-+.-+.+-+|+...-. +|++-. .+.... ...|+.|+...|...-.+.
T Consensus 261 ~~n~~~ILkyLIpv~LLlG~~P~~~-ll~k~~--~~~L~~~y~~L~~AVr~Gdl~~F~~~ 317 (455)
T 3t5v_B 261 TRNGTRILNYMIPTGLILGKMVKWG-PLRPFL--SQETIDNWSVLYKHVRYGNIQGVSLW 317 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCBCHH-HHGGGS--CHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCHH-HHcccc--hHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 1122223333444445567664322 121100 012221 3456666666665444333
No 308
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=21.80 E-value=4e+02 Score=23.20 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=51.3
Q ss_pred HHHHHHHHhC------CCcHHHHHHHHHHHHHH-cCChHHHHHHHhcccc--CCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 012265 173 ELLGQFAEKL------PDKSKIILLARAQVAAA-ANHPFIAAESLAKIPD--IQH-MPATVATLVALKERAGDIDGAAAV 242 (467)
Q Consensus 173 ~~l~~~l~~~------P~~~~~~~l~Laql~~~-~g~~~~A~~~L~~~~~--~~~-~p~~~~~l~~ly~~~g~~~~A~~~ 242 (467)
.+|++++..+ -+|+..+++.+--+-.- .++..++..+|.-+.. +.. ...++...+.++...|++.+|..+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566666533 34555544443222221 4557788899888763 333 445677789999999999999999
Q ss_pred HHHHHHH
Q 012265 243 LDSAIKW 249 (467)
Q Consensus 243 l~~al~~ 249 (467)
|+..+..
T Consensus 138 y~~GI~~ 144 (202)
T 3esl_A 138 LELGAEN 144 (202)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998863
No 309
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=21.60 E-value=2.9e+02 Score=21.44 Aligned_cols=77 Identities=12% Similarity=0.026 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265 131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL 210 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L 210 (467)
...-++|..+.+.+. ..++..-+.++....+...|+|++|..+++... .|+-.. + + |-.-.+.|--+++...|
T Consensus 19 ~H~HqEA~tIAdwL~-~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlep-w-~--ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLE-RLGQDEAARLIRISSLANQGRYQEALAFAHGNP--WPALEP-W-F--ALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHH-H-H--HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHH-H-H--HHHHHhcccHHHHHHHH
Confidence 344677766666554 355544456777888899999999998877654 555432 2 3 33445778888888777
Q ss_pred hccc
Q 012265 211 AKIP 214 (467)
Q Consensus 211 ~~~~ 214 (467)
.++.
T Consensus 92 ~~la 95 (115)
T 2uwj_G 92 AGLG 95 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 310
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=21.52 E-value=2.9e+02 Score=21.45 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHhccccCCCCchHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHcCChHHHHHHH
Q 012265 131 ANKMDQARELVAALPDMFPDSVMPLLLQAAVLVRENKAGKAEELLGQFAEKLPDKSKIILLARAQVAAAANHPFIAAESL 210 (467)
Q Consensus 131 ~~~~~~A~~~~~~l~~~~P~~~~~~ll~a~l~~~~~~~~~A~~~l~~~l~~~P~~~~~~~l~Laql~~~~g~~~~A~~~L 210 (467)
...-++|..+.+.+. ..++..-+.++....+...|+|++|..+++... .|+-.. + +.| .-.+.|--+++...|
T Consensus 20 ~H~HqEA~tIAdwL~-~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlep-w-~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLH-LKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEP-W-LAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHH-H-HHH--HHHHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHH-H-HHH--HHHhcccHHHHHHHH
Confidence 344677766666554 355544456777888899999999998887655 565433 2 333 445678888888777
Q ss_pred hccc
Q 012265 211 AKIP 214 (467)
Q Consensus 211 ~~~~ 214 (467)
.++.
T Consensus 93 ~~la 96 (116)
T 2p58_C 93 NRLA 96 (116)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6554
No 311
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.41 E-value=1.5e+02 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=20.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHH
Q 012265 264 MQEAASFKLRHGREEDASHLFEELVK 289 (467)
Q Consensus 264 l~~la~~~l~~g~~~~A~~~le~ll~ 289 (467)
....+..++..|+|++|++..+++..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33457888999999999988877653
No 312
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.98 E-value=1.8e+02 Score=21.97 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012265 225 TLVALKERAGDIDGAAAVLDSAIKWW 250 (467)
Q Consensus 225 ~l~~ly~~~g~~~~A~~~l~~al~~~ 250 (467)
..+.-+...|+|++|+.+.++|..+.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34444555566666666665555443
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.87 E-value=3.4e+02 Score=24.04 Aligned_cols=76 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcHHH---HHHHHHHHHHHcCChHHHHHHHhccccCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 012265 172 EELLGQFAEKLPDKSKI---ILLARAQVAAAANHPFIAAESLAKIPDIQH---MPATVATLVALKERAGDIDGAAAVLDS 245 (467)
Q Consensus 172 ~~~l~~~l~~~P~~~~~---~~l~Laql~~~~g~~~~A~~~L~~~~~~~~---~p~~~~~l~~ly~~~g~~~~A~~~l~~ 245 (467)
..+|++++..+-++..+ .+++..-+.... ..+++..+|.-+....- ...++...+.++...|++.+|..+|+.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~-~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVN-YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT-TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHH-ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHH
Q 012265 246 AIK 248 (467)
Q Consensus 246 al~ 248 (467)
.+.
T Consensus 176 Gi~ 178 (223)
T 4aez_C 176 GKR 178 (223)
T ss_dssp HHH
T ss_pred HHH
No 314
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.63 E-value=1.9e+02 Score=21.72 Aligned_cols=56 Identities=16% Similarity=-0.046 Sum_probs=27.4
Q ss_pred HHHHHHcCChHHHHHHHhccccCCCC------hhHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Q 012265 194 AQVAAAANHPFIAAESLAKIPDIQHM------PATVATLVAL-KERAGDIDGAAAVLDSAIKWWL 251 (467)
Q Consensus 194 aql~~~~g~~~~A~~~L~~~~~~~~~------p~~~~~l~~l-y~~~g~~~~A~~~l~~al~~~~ 251 (467)
+..+...|+|-+|-++|+.+....+. -+++..-+.+ ..+.|+. |..++.+++....
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 44444556666666665555321111 1222222333 3355665 7777777776553
Done!