BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012266
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IW0|A Chain A, Structure Of The Chitin Deacetylase From The Fungal
Pathogen Colletotrichum Lindemuthianum
Length = 254
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 274 RATSFITDDLWYGIFAGTNPETF--VRADGAFI 304
RAT F+ + W I AG+NP+T +RADG +
Sbjct: 69 RATFFVNGNNWANIEAGSNPDTIRRMRADGHLV 101
>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 166 GPGGVWCDVDVVEFSYYGAPAPTPKEELYTELVDGLRGSDPCIGSGSQVASQET 219
GP G D VE + G P PK + E++ + DPCI G V ET
Sbjct: 504 GPRGPQGDKSPVEEALIGTPIADPKRPV--EILRTVHAFDPCIACGVHVIEPET 555
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 206 PCIGSGSQVASQETYGTLGAIVRSRTGNQQVGFLTNRHVAVD--LDYPNQ 253
P +G S++ ET +GA++ ++ GN+ + LT R A D L P Q
Sbjct: 361 PTVGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQ 410
>pdb|2I07|B Chain B, Human Complement Component C3b
pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 915
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 329 HIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLV 380
++ DL+ P + I ++M + +TT ++A ++ +D+KGIC F V
Sbjct: 26 NVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSM--SDKKGICVADPFEV 75
>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2ICF|B Chain B, Crig Bound To C3b
pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 915
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 329 HIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLV 380
++ DL+ P + I ++M + +TT ++A ++ +D+KGIC F V
Sbjct: 26 NVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSM--SDKKGICVADPFEV 75
>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 912
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 329 HIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLV 380
++ DL+ P + I ++M + +TT ++A ++ +D+KGIC F V
Sbjct: 23 NVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSM--SDKKGICVADPFEV 72
>pdb|2A74|B Chain B, Human Complement Component C3c
pdb|2A74|E Chain E, Human Complement Component C3c
pdb|2QKI|B Chain B, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|E Chain E, Human C3c In Complex With The Inhibitor Compstatin
Length = 188
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 332 DLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLV 380
DL+ P + I ++M + +TT ++A ++ +D+KGIC F V
Sbjct: 29 DLKEPPKNGISTKLMNIFLKDSITTWEILAVSM--SDKKGICVADPFEV 75
>pdb|2ICE|B Chain B, Crig Bound To C3c
pdb|2ICE|E Chain E, Crig Bound To C3c
pdb|3L3O|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|E Chain E, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3NMS|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|B Chain B, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|E Chain E, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3T4A|B Chain B, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|E Chain E, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 206
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 332 DLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLV 380
DL+ P + I ++M + +TT ++A ++ +D+KGIC F V
Sbjct: 29 DLKEPPKNGISTKLMNIFLKDSITTWEILAVSM--SDKKGICVADPFEV 75
>pdb|2A73|B Chain B, Human Complement Component C3
Length = 991
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 329 HIIDLQSPINSLIGRQVMKVGRSSGLTTGTVMAYALEYNDEKGICFFTDFLV 380
++ DL+ P + I ++M + +TT ++A ++ +D+KGIC F V
Sbjct: 102 NVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSM--SDKKGICVADPFEV 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,962,180
Number of Sequences: 62578
Number of extensions: 597195
Number of successful extensions: 1219
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 14
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)