Query 012268
Match_columns 467
No_of_seqs 155 out of 256
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 00:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 3E-144 7E-149 1104.0 29.7 427 17-462 2-447 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 3E-133 7E-138 1020.9 16.7 343 84-435 2-357 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 8E-101 2E-105 766.2 18.6 335 65-432 23-365 (425)
4 PF14812 PBP1_TM: Transmembran 43.9 1.6 3.5E-05 37.1 -4.0 15 15-29 63-77 (81)
5 PF13746 Fer4_18: 4Fe-4S diclu 42.0 14 0.0003 29.9 1.2 26 356-381 35-60 (69)
6 PF15240 Pro-rich: Proline-ric 41.1 18 0.00039 35.0 2.0 18 22-41 2-19 (179)
7 PF15264 TSSC4: Tumour suppres 39.6 12 0.00025 33.8 0.5 14 196-209 57-70 (115)
8 PRK13717 conjugal transfer pro 37.4 33 0.00071 31.6 3.0 31 7-37 5-36 (128)
9 PRK13673 hypothetical protein; 35.9 32 0.00069 31.2 2.6 30 6-35 81-111 (118)
10 PF12555 TPPK_C: Thiamine pyro 28.5 57 0.0012 25.3 2.6 19 16-34 13-32 (53)
11 PF13124 DUF3963: Protein of u 24.6 90 0.0019 23.0 2.8 29 272-300 7-36 (40)
12 PF04712 Radial_spoke: Radial 24.1 1.7E+02 0.0037 32.4 6.3 29 359-387 136-164 (491)
13 PF05279 Asp-B-Hydro_N: Aspart 21.9 86 0.0019 31.8 3.2 27 10-36 4-31 (243)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-144 Score=1103.99 Aligned_cols=427 Identities=49% Similarity=0.873 Sum_probs=382.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcccccCCCCCccccccCcccCHHhHHHhhhhhhhhhhHHhhcCC
Q 012268 17 TRWSLLVGALIAILIAVALAYALKSPNLSHFAPADKSCHCAQEKDKYSGVVEDCCCDYETVNQLNEQVLHPSLQELVKTP 96 (467)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~g~v~dc~c~~etId~~N~~~l~p~L~~L~~t~ 96 (467)
+||.|+++++.++.+++.++. + |.+ ..|||+ +.|+|+||+||++|||++|+++|+|+|+.|+++|
T Consensus 2 ~r~~~l~~l~~~~~l~~~v~~-------~-~~~--~~~~ck-----~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~ksd 66 (469)
T KOG2608|consen 2 KRAIALLGLIAAVKLISVVNT-------Q-FAS--SICFCK-----VDGIIEDCTCDYETIDNLNNEVIYPLLQKLLKSD 66 (469)
T ss_pred chhHHHHHHHHHHHHHHhccc-------c-ccc--cceeee-----cccccccCCCCHHHHHHhhccccchHHHHHhccc
Confidence 458888888888888877652 1 212 689999 7799999999999999999999999999999999
Q ss_pred CceeEeecCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCcccCCCCCC-chhhccCCC-ccccccccchhhhcCcc
Q 012268 97 FFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPETEFPESFKKPFIRGLSSD-DLACQEGKP-EAAVDRTLDSQAFRGWT 174 (467)
Q Consensus 97 fFRyfKVnL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~~-~~~c~~~~~-~~~vd~~l~~~~~~~w~ 174 (467)
|||||||||+++||||+||+||++++|+|++|+|+|||++|+++ +++++++ -..|..+++ .+.+|++++.++|..|.
T Consensus 67 ffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~-~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~w~ 145 (469)
T KOG2608|consen 67 FFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKS-LGKYEPELCSECEDADSELGAKDRTLSDRAFLLWD 145 (469)
T ss_pred chhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhh-hhccChhhhhhhhhccccccchhcccccccccccc
Confidence 99999999999999999999999999999999999999999994 4555542 234555666 78999999999999999
Q ss_pred ccCCC-CcCCCCCCCCCceeeeCCCCCCCCCCCCCCChhhhHHHHhhhcCCCCC------C------ccchhHHHHHHHH
Q 012268 175 ETDNP-WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYP------S------KQLCQEERILYKL 241 (467)
Q Consensus 175 ~~d~~-~~~~De~~~~~~~YVDLl~NPERfTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~ClEkrvfYRL 241 (467)
.+|+. ||++|++++++++||||++||||||||+|++|+|||++||+||||++. . +++|+|||+||||
T Consensus 146 ~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfYrL 225 (469)
T KOG2608|consen 146 KHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFYRL 225 (469)
T ss_pred ccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHHHH
Confidence 99998 999988888999999999999999999999999999999999999875 1 5999999999999
Q ss_pred hhhhhHHHHHHHHhhhccccccCcCCCCHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHhhhhhhccCCCCccccHHH
Q 012268 242 ISGLHSSISIHIAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQAEYETGNPMEDLKT 321 (467)
Q Consensus 242 ISGLHaSIs~Hl~~~Yl~d~~~~~w~pNl~~F~~Rv~~~PeRl~NLYF~Y~lvLRAl~Ka~p~L~~~~f~tg~~~eD~~t 321 (467)
||||||||+||||++|++-+.+..||||+++|+.||++||+||+||||+|++|+|||.||+|||.+.+|+||+..||.+|
T Consensus 226 ISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~e~ 305 (469)
T KOG2608|consen 226 ISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDAET 305 (469)
T ss_pred HHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccchHH
Confidence 99999999999999666444444799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCccccccCCC-CcchhHHHHHHhhhhhhhhhcCccCCcccccchhhhhHHHHHHHHhhcc
Q 012268 322 QSLMKQLLYNPQLQAACPLPFDEAKLWKGQ-RGPELKQKIQGQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV 400 (467)
Q Consensus 322 ~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~-~~~~LKeefr~~FrNISrIMDCVgCeKCRLWGKLQt~GlgTALKILF~~ 400 (467)
+.+|.++++..+ +||.||||+.||.|+ .++.||++||+|||||||||||||||||||||||||+||||||||||+.
T Consensus 306 k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~GlGTALKILfs~ 382 (469)
T KOG2608|consen 306 KSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFSV 382 (469)
T ss_pred HHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHHHHhcc
Confidence 999999998754 599999999999998 7899999999999999999999999999999999999999999999998
Q ss_pred CCCcc---ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchhhhHHHHH
Q 012268 401 NGEEH---LSQTLQLQRNEVIALMNLLNRLSESVKLVHEMGPAAEKVVEGQNSSPTAFSRLLEKM 462 (467)
Q Consensus 401 d~~~~---~~~~~~L~R~ElVALiNt~~RlS~SI~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (467)
.+.++ ....++|+|+|||||+|||+|||+||+.|++|+.++++.+...+......+.....+
T Consensus 383 ~~~~~~~~~s~~~~LtR~EvVAL~N~FgRLS~SV~~v~~fr~~~~~~~~~~~~k~~~~~~~~~~~ 447 (469)
T KOG2608|consen 383 KDADPFTQLSESLELTRNEVVALVNTFGRLSESVREVDNFRSDLAPLLVGASLKAEGNSTAASLI 447 (469)
T ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhcccchHHHHHH
Confidence 87442 234689999999999999999999999999999999999988866543333333333
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=3.4e-133 Score=1020.88 Aligned_cols=343 Identities=54% Similarity=1.003 Sum_probs=281.1
Q ss_pred hhhhhhHHhhcCCCceeEeecCCCCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCcccCCCCCCchhhccCCCccccc
Q 012268 84 VLHPSLQELVKTPFFRYFKVKLWCDCPFWPDD-GMCRLRDCSVCECPETEFPESFKKPFIRGLSSDDLACQEGKPEAAVD 162 (467)
Q Consensus 84 ~l~p~L~~L~~t~fFRyfKVnL~~~CPFW~dd-~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~~~~~c~~~~~~~~vd 162 (467)
+|+|+|++|+++||||||||||+++||||++| ++|++++|+|++|+|+|||+.||+ .++++.. ..|.+++.+..++
T Consensus 2 ~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~-~~~~~~~--~~~~~~~~~~~~~ 78 (357)
T PF04137_consen 2 KIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRA-ELSKLEQ--SACEEGSDQSDLD 78 (357)
T ss_dssp CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSH-HHTS--T--TTECCHCCHCSGG
T ss_pred cchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCccccc-ccccccc--hhcccccchhhhc
Confidence 58999999999999999999999999999998 999999999999999999999999 5555543 2344444455677
Q ss_pred cccch-hhhcCccccCC-C-CcCCCCCCCCCceeeeCCCCCCCCCCCCCCChhhhHHHHhhhcCCCCCC-------ccch
Q 012268 163 RTLDS-QAFRGWTETDN-P-WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYPS-------KQLC 232 (467)
Q Consensus 163 ~~l~~-~~~~~w~~~d~-~-~~~~De~~~~~~~YVDLl~NPERfTGY~G~~A~rIW~aIY~ENCF~~~~-------~~~C 232 (467)
.+++. ..+..|..+++ . ||..|++++++++||||++||||||||+|++|+|||++||+||||++.. +++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C 158 (357)
T PF04137_consen 79 RTLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMC 158 (357)
T ss_dssp GSBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------H
T ss_pred CChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCcccccccccccc
Confidence 77775 67788887764 2 7776666668999999999999999999999999999999999997643 4799
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHhhhccccc--cCcCCCCHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 012268 233 QEERILYKLISGLHSSISIHIAADYLLDEA--NNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQAEY 310 (467)
Q Consensus 233 lEkrvfYRLISGLHaSIs~Hl~~~Yl~d~~--~~~w~pNl~~F~~Rv~~~PeRl~NLYF~Y~lvLRAl~Ka~p~L~~~~f 310 (467)
+|||+|||||||||||||||||++|+++++ .+.|+||+++|++|||+|||||+||||+|+||||||+||+|||.+++|
T Consensus 159 ~EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~~~ 238 (357)
T PF04137_consen 159 LEKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENYDF 238 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST--
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999996654 268999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHHHHHHHHhccccccccCCCCCccccccCCCCcchhHHHHHHhhhhhhhhhcCccCCcccccchhhhhHH
Q 012268 311 ETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQGQFRNISALMDCVGCEKCRLWGKLQVLGL 390 (467)
Q Consensus 311 ~tg~~~eD~~t~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LKeefr~~FrNISrIMDCVgCeKCRLWGKLQt~Gl 390 (467)
+||+..+|.+|+++|.+|++... +||.+|||+.||+++.+.+||+|||+|||||||||||||||||||||||||+||
T Consensus 239 ~tg~~~eD~~t~~~l~~ll~~~~---~~~~~FdE~~lf~~~~~~~Lk~efr~~F~NIs~IMDCV~CeKCRLWGKlQt~Gl 315 (357)
T PF04137_consen 239 NTGNDEEDAETKKLLRDLLSSAK---SCPSHFDESSLFKGDEAPQLKEEFRQHFRNISRIMDCVGCEKCRLWGKLQTQGL 315 (357)
T ss_dssp -STTSCCCCCHHHHHHHHHHCCH---HS-CCCGTTTTTTTTCHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHH
T ss_pred ccCChhhhHHHHHHHHHHHHHHH---hccccCCHHHHcCCccHHHHHHHHHHHHhhHHHHHcCcccchheeechhhhhhH
Confidence 99999999999999999998643 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 012268 391 GTALKILFSVNGEEHLSQTLQLQRNEVIALMNLLNRLSESVKLVH 435 (467)
Q Consensus 391 gTALKILF~~d~~~~~~~~~~L~R~ElVALiNt~~RlS~SI~~v~ 435 (467)
||||||||+.++.. ++++|+|+|||||||||+|||+||++|+
T Consensus 316 gTALKILf~~~~~~---~~~~L~R~E~VAL~Nt~~rlS~SI~~v~ 357 (357)
T PF04137_consen 316 GTALKILFSDDEKQ---NPFKLQRNELVALFNTFGRLSESIEAVN 357 (357)
T ss_dssp HHHHHHHCHHHCHH---CCCTSBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCcC---CcCcccHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999998742 2589999999999999999999999986
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=8e-101 Score=766.16 Aligned_cols=335 Identities=34% Similarity=0.613 Sum_probs=293.5
Q ss_pred ccccC-cccCHHhHHHhhhhhhhhhhHHhhcCCCceeEeecCC-CCCCCCCC-CCCCCCCCCccccCCCCC-CCCCCCCc
Q 012268 65 GVVED-CCCDYETVNQLNEQVLHPSLQELVKTPFFRYFKVKLW-CDCPFWPD-DGMCRLRDCSVCECPETE-FPESFKKP 140 (467)
Q Consensus 65 g~v~d-c~c~~etId~~N~~~l~p~L~~L~~t~fFRyfKVnL~-~~CPFW~d-d~~C~~~~C~V~~c~e~e-iP~~wr~~ 140 (467)
-+|.+ |+.++. |.++|.+ +.|+|-.|+++|||+||++||+ ++||||+| ++||.+++|+|..-+|.+ ||+.|++.
T Consensus 23 ~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~~k 100 (425)
T COG5061 23 IIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWKDK 100 (425)
T ss_pred heecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhHhh
Confidence 34544 777888 9999998 6999999999999999999999 69999999 589999999999999887 99999963
Q ss_pred ccCCCCC----CchhhccCCCccccccccchhhhcCccccCCCCcCCCCCCCCCceeeeCCCCCCCCCCCCCCChhhhHH
Q 012268 141 FIRGLSS----DDLACQEGKPEAAVDRTLDSQAFRGWTETDNPWTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWD 216 (467)
Q Consensus 141 ~~~~~~~----~~~~c~~~~~~~~vd~~l~~~~~~~w~~~d~~~~~~De~~~~~~~YVDLl~NPERfTGY~G~~A~rIW~ 216 (467)
++...+ -++.|+..+. .|..+|+.|+....+.+||||+.||||||||+|++|.+||+
T Consensus 101 -ls~f~ph~kkldq~c~~sk~------------------pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IWr 161 (425)
T COG5061 101 -LSLFKPHSKKLDQFCSESKC------------------PDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIWR 161 (425)
T ss_pred -hhhhccchhhhhhccccccC------------------CchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHHH
Confidence 222211 1223332211 12237877777778899999999999999999999999999
Q ss_pred HHhhhcCCCCCCccchhHHHHHHHHhhhhhHHHHHHHHhhhccccccCcCCCCHHHHHHHhhccccchhhHHHHHHHHHH
Q 012268 217 AIYSENCPTYPSKQLCQEERILYKLISGLHSSISIHIAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLR 296 (467)
Q Consensus 217 aIY~ENCF~~~~~~~ClEkrvfYRLISGLHaSIs~Hl~~~Yl~d~~~~~w~pNl~~F~~Rv~~~PeRl~NLYF~Y~lvLR 296 (467)
.||+.|||.......-+|||+||||||||||||+||+|.+|+ +..+|.|+||+++|++|||++||||.|+||+|++|-+
T Consensus 162 ~Iyeqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yl-n~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~~ 240 (425)
T COG5061 162 KIYEQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYL-NVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVRS 240 (425)
T ss_pred HHHHhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999998776667799999999999999999999999999 4567899999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCCccccHHHHHHHHHHhccccccccCCCCCccccccCCCCcchhHHHHHHhhhhhhhhhcCccC
Q 012268 297 AVTKAAEYLEQAEYETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQGQFRNISALMDCVGC 376 (467)
Q Consensus 297 Al~Ka~p~L~~~~f~tg~~~eD~~t~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LKeefr~~FrNISrIMDCVgC 376 (467)
||.|+.++|....||..+.. +++..+.+|++.. .+-+.+|||..+|.++.+.+||++||+|||+||||||||||
T Consensus 241 al~kI~~~l~sftFC~~~~~---e~~~k~~~lis~i---~~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVgC 314 (425)
T COG5061 241 ALGKIDVDLSSFTFCPTDKD---ELSGKLSSLISAI---RAQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVGC 314 (425)
T ss_pred HHHhhccCCcccccCCccHH---HHHhHHHHHHHHH---HhccccccceecccCccchhhhHHHHHHHHhHHHHHHhcCc
Confidence 99999999999999865422 8888899998743 34578999999999999999999999999999999999999
Q ss_pred CcccccchhhhhHHHHHHHHhhccCCCccccccccccchhHHHHHHHHHHHHHHHH
Q 012268 377 EKCRLWGKLQVLGLGTALKILFSVNGEEHLSQTLQLQRNEVIALMNLLNRLSESVK 432 (467)
Q Consensus 377 eKCRLWGKLQt~GlgTALKILF~~d~~~~~~~~~~L~R~ElVALiNt~~RlS~SI~ 432 (467)
|||||||||||+||||||||||+.+- +.+.|++.|+|||+|||+|||+||+
T Consensus 315 ekCrLWGkIQttGygtALKilfe~et-----~~fdLr~~E~vaLvntFdRLS~Sv~ 365 (425)
T COG5061 315 EKCRLWGKIQTTGYGTALKILFESET-----QLFDLRSLERVALVNTFDRLSVSVR 365 (425)
T ss_pred hhhheeeeeeecchHHHHHHHhcccc-----ccccccHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999843 2477999999999999999999997
No 4
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=43.89 E-value=1.6 Score=37.07 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=3.6
Q ss_pred CCCchHHHHHHHHHH
Q 012268 15 YKTRWSLLVGALIAI 29 (467)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (467)
.+++|.|+++.|++|
T Consensus 63 kKrrwlwLlikl~lV 77 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLV 77 (81)
T ss_dssp --------TTTTHCC
T ss_pred ccchhHHHHHHHHHH
Confidence 344477766654444
No 5
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=42.03 E-value=14 Score=29.88 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=17.7
Q ss_pred hHHHHHHhhhhhhhhhcCccCCcccc
Q 012268 356 LKQKIQGQFRNISALMDCVGCEKCRL 381 (467)
Q Consensus 356 LKeefr~~FrNISrIMDCVgCeKCRL 381 (467)
++..|..+++.-.-..+||||.+|--
T Consensus 35 ~r~r~~~k~~~~~~~~~CVgCgrCv~ 60 (69)
T PF13746_consen 35 MRYRFMHKLRDRYGEGDCVGCGRCVR 60 (69)
T ss_pred cchhhhhhhhhhcCCccCCCcChHhh
Confidence 34444455555557889999999964
No 6
>PF15240 Pro-rich: Proline-rich
Probab=41.11 E-value=18 Score=35.04 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 012268 22 LVGALIAILIAVALAYALKS 41 (467)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~ 41 (467)
||++|.|+|||+ |||.++
T Consensus 2 LlVLLSvALLAL--SSAQ~~ 19 (179)
T PF15240_consen 2 LLVLLSVALLAL--SSAQST 19 (179)
T ss_pred hhHHHHHHHHHh--hhcccc
Confidence 567777888776 675543
No 7
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=39.57 E-value=12 Score=33.80 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCC
Q 012268 196 LQLNPERYTGYTGP 209 (467)
Q Consensus 196 Ll~NPERfTGY~G~ 209 (467)
-+.||||||-|+=.
T Consensus 57 Yv~nP~KwTkYSL~ 70 (115)
T PF15264_consen 57 YVRNPEKWTKYSLD 70 (115)
T ss_pred CcCCcccceeeecC
Confidence 34999999999854
No 8
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=37.38 E-value=33 Score=31.61 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=20.2
Q ss_pred hhhcCCCCCCCc-hHHHHHHHHHHHHHHHHhh
Q 012268 7 EKKKKGTSYKTR-WSLLVGALIAILIAVALAY 37 (467)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 37 (467)
||.-.+|+.++| |.|.+++++..+++.|..|
T Consensus 5 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~a~~s 36 (128)
T PRK13717 5 QKTTDVTAPRRSHWWWTVPGCLAMVLLNAAVS 36 (128)
T ss_pred ccCCcccccchhcchHHHHHHHHHHHHHHHHH
Confidence 555667776666 8888877776666554433
No 9
>PRK13673 hypothetical protein; Provisional
Probab=35.88 E-value=32 Score=31.25 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=19.5
Q ss_pred HhhhcCCCCCCCchHHHHH-HHHHHHHHHHH
Q 012268 6 AEKKKKGTSYKTRWSLLVG-ALIAILIAVAL 35 (467)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 35 (467)
--|||||.++++-|...++ .+++++++...
T Consensus 81 l~r~kk~k~~~~~~~~~ii~lvlti~lG~~L 111 (118)
T PRK13673 81 LAKRKKGKPTGGFWWIFIIVLVLTILLGLIL 111 (118)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 3578888988888655444 55555556543
No 10
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=28.49 E-value=57 Score=25.31 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=9.5
Q ss_pred CCchHHHHH-HHHHHHHHHH
Q 012268 16 KTRWSLLVG-ALIAILIAVA 34 (467)
Q Consensus 16 ~~~~~~~~~-~~~~~~~~~~ 34 (467)
.+.|.|+++ +|+++++++.
T Consensus 13 ~~~~~~lvlaaLvav~v~l~ 32 (53)
T PF12555_consen 13 GWALALLVLAALVAVAVALL 32 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 334566554 4555555544
No 11
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=24.62 E-value=90 Score=23.03 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=20.7
Q ss_pred HHHHH-hhccccchhhHHHHHHHHHHHHHH
Q 012268 272 LMYDR-VLRYPDRVRNLYFTFLFVLRAVTK 300 (467)
Q Consensus 272 ~F~~R-v~~~PeRl~NLYF~Y~lvLRAl~K 300 (467)
-|.+| +..-..+|+|+-|.++++.-++..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566 344567999999999888766643
No 12
>PF04712 Radial_spoke: Radial spokehead-like protein
Probab=24.12 E-value=1.7e+02 Score=32.41 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=21.6
Q ss_pred HHHHhhhhhhhhhcCccCCcccccchhhh
Q 012268 359 KIQGQFRNISALMDCVGCEKCRLWGKLQV 387 (467)
Q Consensus 359 efr~~FrNISrIMDCVgCeKCRLWGKLQt 387 (467)
+.-.-+.-|.+++.=-.-.+||+||||..
T Consensus 136 e~~~l~~sl~~L~~~~~~~~vrFWGkI~G 164 (491)
T PF04712_consen 136 EAFRLQLSLKQLAETEPLQSVRFWGKILG 164 (491)
T ss_pred HHHHHHHHHHHHHhhCCccEEEEEEEEec
Confidence 44445666777777777889999999973
No 13
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=21.86 E-value=86 Score=31.80 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=17.3
Q ss_pred cCCCCCCCchHH-HHHHHHHHHHHHHHh
Q 012268 10 KKGTSYKTRWSL-LVGALIAILIAVALA 36 (467)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 36 (467)
|-|.|.+....| +|+|||.+..+||+-
T Consensus 4 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 31 (243)
T PF05279_consen 4 KGGLSGSSFFTWFLVLALLGVWSSVAVV 31 (243)
T ss_pred ccCCCCCchHHHHHHHHHHHHHHhhHhh
Confidence 344444444677 667888888777764
Done!