Citrus Sinensis ID: 012270
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | 2.2.26 [Sep-21-2011] | |||||||
| A9X4U2 | 561 | 3beta-hydroxysteroid-dehy | yes | no | 0.910 | 0.757 | 0.617 | 1e-149 | |
| Q67ZE1 | 564 | 3beta-hydroxysteroid-dehy | no | no | 0.935 | 0.774 | 0.457 | 1e-105 | |
| Q9FX01 | 439 | 3beta-hydroxysteroid-dehy | no | no | 0.890 | 0.947 | 0.421 | 3e-90 | |
| Q5PPL3 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.717 | 0.925 | 0.372 | 1e-55 | |
| Q9R1J0 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.717 | 0.925 | 0.370 | 3e-55 | |
| Q3ZBE9 | 356 | Sterol-4-alpha-carboxylat | yes | no | 0.715 | 0.938 | 0.368 | 1e-52 | |
| Q15738 | 373 | Sterol-4-alpha-carboxylat | yes | no | 0.706 | 0.884 | 0.363 | 9e-51 | |
| A8DZE7 | 387 | Short-chain dehydrogenase | no | no | 0.715 | 0.863 | 0.311 | 4e-39 | |
| P53199 | 349 | Sterol-4-alpha-carboxylat | yes | no | 0.691 | 0.925 | 0.323 | 4e-37 | |
| O43050 | 340 | Sterol-4-alpha-carboxylat | yes | no | 0.691 | 0.95 | 0.322 | 4e-36 |
| >sp|A9X4U2|HSDD3_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/434 (61%), Positives = 330/434 (76%), Gaps = 9/434 (2%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNI 442
+ L+G +PS I
Sbjct: 424 AVALYGVSFVPSKI 437
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 0 |
| >sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/444 (45%), Positives = 270/444 (60%), Gaps = 7/444 (1%)
Query: 2 PFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS 61
P R CVV GRGF R LV L+ VR+ D ++ LDP E N +L + L
Sbjct: 3 PAATETERWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLR 62
Query: 62 SGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
SGR +Y D+RD SQ+ K +GA VF++ A D + ++ Y + VQG +NV+ AC +
Sbjct: 63 SGRVQYISADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVD 122
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
V+RL+Y S+ VVFDG H I NG E++ K D KA+ E L++ AN +GLL
Sbjct: 123 VGVKRLIYTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLL 182
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TC +RPS++FGPGD LVP LV A+ G +KFIIG G N+ DFTYVENVAHAHVCA AL
Sbjct: 183 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERAL 242
Query: 242 DSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
S AG A+FITN+EPIKFW+F+S +L+GLGY+RP IK+P ++ I LV+
Sbjct: 243 ASGGDVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELT 302
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
++ LG V+L S +RTFD A+ +GY+PVV L+EG+ TI SFSHL
Sbjct: 303 YKVLGPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLT 362
Query: 359 RDSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLT 418
S SK ++LGGGKVAD LLWKD K+T +L+ ++Y F GST+
Sbjct: 363 AGS----QSKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVV 418
Query: 419 SSAAKFLLLLSAVLFGYGILPSNI 442
++ +K LL+ S LF +GILP I
Sbjct: 419 TALSKALLVASVFLFLHGILPEKI 442
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q9FX01|HSDD1_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/441 (42%), Positives = 254/441 (57%), Gaps = 25/441 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R CVV GRGF R LV L+ VR+ D ++ L+P E +L +++ SGR +Y
Sbjct: 10 RWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILGEAIRSGRVQYV 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+R+ +Q+ K +GA VF++ A D + ++ Y + VQG NV+ AC E V+RL+
Sbjct: 70 SADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIEVGVKRLI 129
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
Y S+ VVFDG H N DE+L K D KA+ EAL+L AN GLLTC +RPS
Sbjct: 130 YTSSPSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLLTCCIRPS 189
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR---M 245
++FGPGD +VP LV A+ G +KFIIG G N DFTYVENV HAHVCA AL S
Sbjct: 190 SIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERALASGGEVC 249
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
AG A+FITN+EPIKFW+F+S +LEGLGY+RP IK+P ++ I LV+ ++ LG
Sbjct: 250 AKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELAYKLLGPY 309
Query: 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAY 365
+ V+L S RTFD A+ +GYSPVV L+EG+ TI SFSHL +
Sbjct: 310 GMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHLKAQN---- 365
Query: 366 SRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFL---GGSTLTSSAA 422
Q K E V + + WK K+T ++L+ L++ F S + ++ +
Sbjct: 366 ------QPKTE-------VTETIQWK--KQTLIAIVILITLYHNFVATTGSSSVIITAVS 410
Query: 423 KFLLLLSAVLFGYGILPSNIN 443
K LL+ S +F GILP +
Sbjct: 411 KVLLVSSIFMFINGILPEKMK 431
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q5PPL3|NSDHL_RAT Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 190/354 (53%), Gaps = 19/354 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q + R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLSRGYA-VNVFDVRQGF---------------DNPRVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + N+++ Y + G K V+ C+E V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPSNSNNKELFYRVNSTGTKTVIETCKEAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR
Sbjct: 190 HGIFGPRDPQLVPVLIDAARKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHL-SRDAG 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ L+ + L
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYRVAYYLAFLLSLLVMVLSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361
+ + V LA + C A+K IGY P+V++++ V T+QSF HL +D
Sbjct: 309 IQTTFTPFRVALAGTFHYYSCEKAKKLIGYRPLVTMDDAVERTVQSFHHLRKDK 362
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 188/354 (53%), Gaps = 19/354 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LLE G V V D Q + R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLERGYT-VNVFDIHQGF---------------DNPRVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + +++ Y + G K V+ CRE V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L S+ +
Sbjct: 190 HGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL-SQDAA 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ L+ + +
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361
V LA + C A+K GY P+V+++E V T+QSF HL +D
Sbjct: 309 IQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRKDK 362
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 192/361 (53%), Gaps = 27/361 (7%)
Query: 5 EAIPRT--CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
E IP+ C V+ G GF+G+ +V +LL G V V D Q +
Sbjct: 15 EDIPKAKRCTVIGGCGFLGQHMVEQLLARGYA-VNVFDIRQGF---------------DN 58
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTAC 119
R ++ D+ + L+G STVF+ + + N + FY I G KNV+ C
Sbjct: 59 PRVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPFNNNKELFYRVNYI---GTKNVIETC 115
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID- 178
+E V++L+ S+A V+F+G DI NG E L K D + K E VL A++ +
Sbjct: 116 KEAGVQKLILTSSASVIFEGV-DIKNGTEDLPYATKPIDYYTETKILQERAVLGAHDPEK 174
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
LT A+RP +FGP D QLVP+L+ AK G KF+IG+G+N+ DFT+VENV H H+ AA
Sbjct: 175 NFLTTAIRPHGIFGPRDPQLVPILIEAAKKGKMKFMIGNGKNLVDFTFVENVVHGHILAA 234
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
E L S+ ++ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ LLV +
Sbjct: 235 EHL-SQDTALGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWLAYYLALLVSLL 293
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
+ V LA + C A+K +GY P+V++++ V T++SF HL
Sbjct: 294 VMVISPVIQLQPTFTPMRVALAGTFHYYSCEKAKKLMGYRPLVTMDDAVDKTVRSFHHLR 353
Query: 359 R 359
+
Sbjct: 354 K 354
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q15738|NSDHL_HUMAN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Homo sapiens GN=NSDHL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 129/355 (36%), Positives = 187/355 (52%), Gaps = 25/355 (7%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q D + L D S
Sbjct: 38 KRCTVIGGSGFLGQHMVEQLLARGYA-VNVFDIQQGF--DNPQVRFFLGDLCSR------ 88
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ L+G +TVF+ + ++++ Y + G KNV+ C+E V++L+
Sbjct: 89 -------QDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLI 141
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A V+F+G DI NG E L K D + K E VL AN+ + LT A+RP
Sbjct: 142 LTSSASVIFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRP 200
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L+ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR +
Sbjct: 201 HGIFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQL-SRDST 259
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P W L + + + +
Sbjct: 260 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIP---YWVAYYLALLLSLLVMVISP 316
Query: 308 NHSLSACYI---VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
L + V LA + C A+K +GY P+V++++ + T+QSF HL R
Sbjct: 317 VIQLQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLRR 371
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|A8DZE7|D42E1_DANRE Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 190/363 (52%), Gaps = 29/363 (7%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++ G G+ G L LL+ S++ + D S LP+ L RA D
Sbjct: 11 LITGGGGYFGFRLACALLK---------TSSKVVLFDVSPPIQDLPEGLIFMRA-----D 56
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRRLV 128
+RD +Q++K + G+ VF++ + ++ + N +I V+G +N++ AC V RL+
Sbjct: 57 IRDYAQVEKAVRGSHCVFHIASYGMSGREQLNRKLIEEVNVKGTENILRACVAHSVPRLI 116
Query: 129 YNSTADVVFDGSHDIHNGDETLT--CCWKFQDLMCDLKAQAEALVLFANNI-----DGLL 181
Y ST +VVF G +I NGDE+L D K+ AE VL ANN+ G+L
Sbjct: 117 YTSTFNVVF-GGQEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLALSNSTGVL 175
Query: 182 -TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
TCALRP+ ++GPG+ + +P +V+ + G +F+ G +++ +F +V+N+ AH+ AA+A
Sbjct: 176 RTCALRPAGIYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAADA 235
Query: 241 L-DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
L + + AG A+FI++ P+ ++F ++EGLGY P ++LP ++++ L + +H
Sbjct: 236 LTEKQQCRAAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYFFAFLTEMVH 295
Query: 300 EKLGLRTYN-HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
+G R YN L V T F A++ +GY P + E V Q+ H
Sbjct: 296 FVVG-RIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEPKLYDLEDVVQWFQARGHGK 354
Query: 359 RDS 361
+ S
Sbjct: 355 KRS 357
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P53199|ERG26_YEAST Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG26 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 182/356 (51%), Gaps = 33/356 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSS------ 62
+ +++ G GF+G L+ + ++ K + + D LP+ LS
Sbjct: 6 SVLIIGGSGFLGLHLIQQFFDINPKPDIHIFDVRD------------LPEKLSKQFTFNV 53
Query: 63 GRAEYHQVDVRDISQIKKVL-EGASTVFYVDATDLN--TDDFYNCYMIIVQGAKNVVTAC 119
++H+ D+ ++ + E + V A+ ++ D Y+ ++ V+G +NV+ C
Sbjct: 54 DDIKFHKGDLTSPDDMENAINESKANVVVHCASPMHGQNPDIYD--IVNVKGTRNVIDMC 111
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
++C V LVY S+A V+F+G D+HN DET D + KA AE +VL AN+
Sbjct: 112 KKCGVNILVYTSSAGVIFNG-QDVHNADETWPIPEVPMDAYNETKAIAEDMVLKANDPSS 170
Query: 180 -LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
T ALRP+ +FGPGD QLVP L +AK G +KF IG N+ D+TY NVA AHV AA
Sbjct: 171 DFYTVALRPAGIFGPGDRQLVPGLRQVAKLGQSKFQIGDNNNLFDWTYAGNVADAHVLAA 230
Query: 239 EA-LDSRM-VSVAGMAFFITNLEPIKFWDFLSIILEGLGY-QRPFIKLPTGVVWYIILLV 295
+ LD + +V+G FFITN P FW + + G+ + I L V L
Sbjct: 231 QKLLDPKTRTAVSGETFFITNDTPTYFWALARTVWKADGHIDKHVIVLKRPVAICAGYLS 290
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
+W+ + LG L+ + V++ R + A+K +GY+P V +EEG++ T+
Sbjct: 291 EWVSKMLGKEP---GLTP-FRVKIVCAYRYHNIAKAKKLLGYTPRVGIEEGINKTL 342
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|O43050|ERG26_SCHPO Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 177/353 (50%), Gaps = 30/353 (8%)
Query: 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
+P V++ G GF+G ++ +L E ++ + D E+ LL + G+
Sbjct: 1 MPMNSVLVIGSGFLGGHIIRQLCE--------RENLRIAAFDLFENEKLLHEL--HGQFT 50
Query: 67 YHQVDVRDISQIKKVLE--GASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECK 123
+ D+ I++V E V + + N D Y + + V G N++ AC++
Sbjct: 51 MYTGDLTKQGDIERVFEEFHPRVVIHTASPVHNLARDIY--FEVNVDGTANIIKACQKFN 108
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
V LVY S+A VVF+G+ D+ N DE+ D + KA AE VL A++ + L T
Sbjct: 109 VDALVYTSSAGVVFNGA-DLINVDESQPIPEVHMDAYNESKALAEKQVLEASS-ESLKTA 166
Query: 184 ALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
ALR + +FGPGD QLVP ++++ K G TKF +G N+ DFTY+EN A+AH+ A + L S
Sbjct: 167 ALRVAGLFGPGDRQLVPGMLSVLKNGQTKFQLGDNLNLFDFTYIENAAYAHLLAMDNLLS 226
Query: 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWI---- 298
+ G FFITN + I FWDF I G+ P+ IK P V + +W+
Sbjct: 227 SNPTANGQVFFITNGQVIYFWDFARAIWAHAGHVPPYIIKFPRPVGMLLATAAEWVCYFL 286
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
++ G + VQ + R F+ A+ + Y P+V LEEG+ T+
Sbjct: 287 KKEPGFTRFR--------VQFSCANRYFNIQKAEDVLKYHPIVDLEEGIRRTL 331
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | ||||||
| 359478143 | 581 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.942 | 0.757 | 0.712 | 0.0 | |
| 255577185 | 579 | hydroxysteroid dehydrogenase, putative [ | 0.946 | 0.763 | 0.693 | 0.0 | |
| 449459852 | 582 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.940 | 0.754 | 0.656 | 1e-169 | |
| 449498843 | 582 | PREDICTED: LOW QUALITY PROTEIN: 3beta-hy | 0.940 | 0.754 | 0.654 | 1e-168 | |
| 147801865 | 1976 | hypothetical protein VITISV_007871 [Viti | 0.860 | 0.203 | 0.647 | 1e-162 | |
| 356541140 | 575 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.935 | 0.76 | 0.640 | 1e-161 | |
| 356544508 | 586 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.925 | 0.737 | 0.649 | 1e-159 | |
| 89521300 | 561 | 4-alphacarboxysterol-dehydrogenase/C4-de | 0.910 | 0.757 | 0.617 | 1e-148 | |
| 18406234 | 561 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.910 | 0.757 | 0.617 | 1e-148 | |
| 297828041 | 562 | 3-beta hydroxysteroid dehydrogenase/isom | 0.910 | 0.756 | 0.605 | 1e-141 |
| >gi|359478143|ref|XP_002269633.2| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Vitis vinifera] gi|297743842|emb|CBI36725.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/442 (71%), Positives = 371/442 (83%), Gaps = 2/442 (0%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL 60
M DE + +TCVV GRGF+GR LVLRLL+LGK IVRV DS QSLQLDPSE S+L +++
Sbjct: 1 MAIDENL-KTCVVFGGRGFIGRFLVLRLLKLGKWIVRVADSAQSLQLDPSEDRSVLSEAI 59
Query: 61 SSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR 120
SSGRA VDVRD +Q++K +EGAS VFY+D T T+DFY CYMIIVQG +NV+ AC+
Sbjct: 60 SSGRASCCAVDVRDKAQVRKAIEGASVVFYMDPTITYTNDFYLCYMIIVQGVRNVINACQ 119
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
ECKV+RL+YNS+ADVVFDGSHDI+NGDE+L C WKF+D++ D+KAQAE LVL ANNIDGL
Sbjct: 120 ECKVKRLIYNSSADVVFDGSHDIYNGDESLPCPWKFEDMLTDIKAQAEGLVLIANNIDGL 179
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+TCALRP NVFGPGD QLVP LVN AK G KF+IGSGENMSDFTYVENVAHAHVCA EA
Sbjct: 180 VTCALRPCNVFGPGDKQLVPFLVNKAKSGHAKFVIGSGENMSDFTYVENVAHAHVCAEEA 239
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
L SRMVSVAG FFITNLEP+KFW+F+S+ILEGLGYQRP KLP G+V Y++ LV+W+ +
Sbjct: 240 LVSRMVSVAGKVFFITNLEPVKFWEFVSLILEGLGYQRPLFKLPAGMVLYVLSLVEWMRD 299
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
KL R+ NH +SA Y+VQ+ASRTRTF+C AAQKHIGYSPVVSLEEGV+ T +SFS L++D
Sbjct: 300 KLDFRS-NHPVSAQYVVQIASRTRTFNCSAAQKHIGYSPVVSLEEGVTLTTESFSQLSQD 358
Query: 361 SSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSS 420
SS+ RDF+EQSKV+KLLGGGKVADILLW+DEKKTFT FL L L+FYWFFL G T SS
Sbjct: 359 SSVMALRDFDEQSKVDKLLGGGKVADILLWRDEKKTFTCFLALFLMFYWFFLCGRTFISS 418
Query: 421 AAKFLLLLSAVLFGYGILPSNI 442
AAK LLL++A+L G GILP+NI
Sbjct: 419 AAKLLLLVTAILSGQGILPTNI 440
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577185|ref|XP_002529475.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] gi|223531033|gb|EEF32885.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/444 (69%), Positives = 369/444 (83%), Gaps = 2/444 (0%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDS 59
+PF E PRTC V+ GRGF+GRSLV LL+LG IVRV DS QSLQLD ++S +S L D+
Sbjct: 5 VPFGELNPRTCTVVGGRGFIGRSLVFNLLKLGNWIVRVVDSAQSLQLDLTDSLDSSLNDA 64
Query: 60 LSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTAC 119
+SSGRA YH +DV DIS I K +EG+S VFY++ATDL T DFY CY +VQGAKNV+ AC
Sbjct: 65 ISSGRASYHYIDVIDISVIAKAIEGSSVVFYMEATDLWTHDFYYCYRNVVQGAKNVIDAC 124
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
R+CKVR+L+YNS+ADV+FDGSHDI NGDE+L C W+F+D++ DLKA AEALVLFANNIDG
Sbjct: 125 RQCKVRKLIYNSSADVIFDGSHDICNGDESLPCHWRFEDMLNDLKAHAEALVLFANNIDG 184
Query: 180 LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
LLTCALRPSNVFGPGDTQL+P L++LAK G KFIIGSGENMSDFTYVENVAHAH+CAAE
Sbjct: 185 LLTCALRPSNVFGPGDTQLLPFLISLAKSGCAKFIIGSGENMSDFTYVENVAHAHICAAE 244
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
ALDSRMV VAG AFFITNLEP+KFW+F S+ILE L YQRP IKLP +VWY++L +KW+H
Sbjct: 245 ALDSRMVCVAGKAFFITNLEPMKFWEFASLILEALSYQRPLIKLPAQMVWYVLLFIKWMH 304
Query: 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
EKLG YNHS+SA Y +LAS TRTF+CIAAQK+IGYSPVVSL++G++ TI+++S+L +
Sbjct: 305 EKLGFSKYNHSMSA-YFFRLASHTRTFNCIAAQKYIGYSPVVSLDDGIALTIEAYSNLVK 363
Query: 360 DSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTS 419
D S +F E+SKV+KLLGGGKVADILLW+DEKKTFTYFL+ +LFYWF L G T TS
Sbjct: 364 DPSFMRCPNFEEESKVDKLLGGGKVADILLWRDEKKTFTYFLIFAVLFYWFLLSGRTFTS 423
Query: 420 SAAKFLLLLSAVLFGYGILPSNIN 443
SAA+ LLL +L+GYG LP I+
Sbjct: 424 SAARLLLLSVTILYGYGFLPLKIS 447
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459852|ref|XP_004147660.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 289/440 (65%), Positives = 353/440 (80%), Gaps = 1/440 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F E +TCVVL GRGF+GRSLVLRLL+L K VR+ DS SL+LDPSE +SLL D+L +
Sbjct: 7 FLELNTKTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSANSLELDPSEHDSLLSDALIA 66
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
GRA Y VDVR+ QI L G+S VFY+D D +++D Y YM IVQGAKNV++ACR+C
Sbjct: 67 GRASYFHVDVRNKDQIVAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVISACRDC 126
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
KVRRL++NS+ADV+FDGS DI NG+E+LT WKF+D++ DLKAQAEAL+LFAN+IDGLLT
Sbjct: 127 KVRRLIFNSSADVIFDGSRDILNGEESLTYPWKFEDMLSDLKAQAEALILFANDIDGLLT 186
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
CALRPSNVFGP DT+LVP +V+ AK G+ KFIIG+GENMSDFT+VENV HAH+CA EALD
Sbjct: 187 CALRPSNVFGPEDTRLVPFIVHQAKSGFAKFIIGNGENMSDFTFVENVTHAHICAEEALD 246
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
RMVSVAG AFFITN +P+KFW+F+S+IL GLGY+RP +KLP+ VVW ++L +KWI EK
Sbjct: 247 FRMVSVAGKAFFITNFKPMKFWEFISLILRGLGYRRPSVKLPSKVVWNVLLFMKWIDEKF 306
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G YNHS A YI QLAS TRTF C AA K +GYSPVVSLEEG++ TI+SFSHL ++ S
Sbjct: 307 GFNKYNHSTWAHYI-QLASCTRTFSCAAAHKQLGYSPVVSLEEGITLTIKSFSHLRKELS 365
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
LA +F E+SK +KLLGGG+VAD+LLW+DEKK+FT FL LLFYWFF+ G T SSAA
Sbjct: 366 LASFTEFTEESKADKLLGGGRVADVLLWRDEKKSFTCFLASSLLFYWFFVRGGTFISSAA 425
Query: 423 KFLLLLSAVLFGYGILPSNI 442
+ LL + VL+GYG +P NI
Sbjct: 426 QLLLSIIIVLYGYGFIPPNI 445
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449498843|ref|XP_004160650.1| PREDICTED: LOW QUALITY PROTEIN: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/440 (65%), Positives = 351/440 (79%), Gaps = 1/440 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F E +TCVVL GRGF+GRSLVLRLL+L K VR+ DS SL+LDPSE +SLL D+L +
Sbjct: 7 FLELNTKTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSANSLELDPSEHDSLLSDALIA 66
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
GRA Y VDVR+ QI L G+S VFY+D D +++D Y YM IVQGAKNV++ACR+C
Sbjct: 67 GRASYFHVDVRNKDQIVAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVISACRDC 126
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
KVRRL++NS+ADV+FDGS DI NG+E+LT WKF+D++ DLKAQAEAL+LFAN+IDGLLT
Sbjct: 127 KVRRLIFNSSADVIFDGSRDILNGEESLTYPWKFEDMLSDLKAQAEALILFANDIDGLLT 186
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
CALRPSNVFGP DT+LVP +V+ AK G+ KFIIG+GENMSDFT+VENV HAH+CA EALD
Sbjct: 187 CALRPSNVFGPEDTRLVPFIVHQAKSGFAKFIIGNGENMSDFTFVENVTHAHICAEEALD 246
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
RMVSVAG AFFITN +P+KFW+F+S+IL GLGY+RP +KLP+ VVW ++L +KWI EK
Sbjct: 247 FRMVSVAGKAFFITNFKPMKFWEFISLILRGLGYRRPSVKLPSKVVWNVLLFMKWIDEKF 306
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G YNHS A YI QLAS TRTF C AA K +GYSPVVSLEEG++ TI+SFSHL ++ S
Sbjct: 307 GFNKYNHSTWAHYI-QLASCTRTFSCAAAHKQLGYSPVVSLEEGITLTIKSFSHLRKELS 365
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
LA +F E+SK +KLLGGG+VAD+LLW+DEKK+FT FL LLFYWF G T SSAA
Sbjct: 366 LASFTEFTEESKADKLLGGGRVADVLLWRDEKKSFTCFLASSLLFYWFLXRGGTFISSAA 425
Query: 423 KFLLLLSAVLFGYGILPSNI 442
+ LL + VL+GYG +P NI
Sbjct: 426 QLLLSIIIVLYGYGFIPPNI 445
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801865|emb|CAN74982.1| hypothetical protein VITISV_007871 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/442 (64%), Positives = 340/442 (76%), Gaps = 40/442 (9%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL 60
M DE + +TCVV GRGF+GR LVLRLL+LGK IVRV DS QSLQLDPSE S+L +++
Sbjct: 1 MAIDENL-KTCVVFGGRGFIGRFLVLRLLKLGKWIVRVADSAQSLQLDPSEDRSVLSEAI 59
Query: 61 SSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR 120
SSGRA VDVRD +Q++K +EGAS VFY+D T T+DFY CYMIIVQG +NV+ AC+
Sbjct: 60 SSGRASCCAVDVRDKAQVRKAIEGASVVFYMDPTITYTNDFYLCYMIIVQGVRNVINACQ 119
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
ECKV+RL+YNS+ADVVFDGSHDI+NGDE+L C WKF+D++ D+KAQAE LVL ANNIDGL
Sbjct: 120 ECKVKRLIYNSSADVVFDGSHDIYNGDESLPCPWKFEDMLTDIKAQAEGLVLIANNIDGL 179
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+TCALRP NVFGPGD QLVP LVN AK G KF+IGSGENMSDFTYVENVAHAHVCA EA
Sbjct: 180 VTCALRPCNVFGPGDKQLVPFLVNKAKSGHAKFVIGSGENMSDFTYVENVAHAHVCAEEA 239
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
L SRMVSVAG FFITNLEP+KFW+F+S+ILEGLGYQRP KLP G+V Y++ LV+W+ +
Sbjct: 240 LVSRMVSVAGKVFFITNLEPVKFWEFVSLILEGLGYQRPLFKLPAGMVLYVLSLVEWMRD 299
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
KL R+ NH +SA Y+VQ+ASRTRTF+C AAQKHIGYSPVVSLEEGV+ T +SFS L++D
Sbjct: 300 KLDFRS-NHPVSAQYVVQIASRTRTFNCSAAQKHIGYSPVVSLEEGVTLTTESFSQLSQD 358
Query: 361 SSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSS 420
SS+ RDF+EQSKV+KLLGGGK
Sbjct: 359 SSVMALRDFDEQSKVDKLLGGGK------------------------------------- 381
Query: 421 AAKFLLLLSAVLFGYGILPSNI 442
AK LLL++A+L G GILP+NI
Sbjct: 382 -AKLLLLVTAILSGQGILPTNI 402
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541140|ref|XP_003539040.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 282/440 (64%), Positives = 350/440 (79%), Gaps = 3/440 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F + P+TCVVL GRGF+GRSLVLRLL+LG IVRV DS QSLQL SES LL +LSS
Sbjct: 8 FADLNPKTCVVLGGRGFLGRSLVLRLLKLGNWIVRVADSAQSLQLHHSES--LLEQALSS 65
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
RA Y VD+ D I KVLEG+S VFY+D ++ ++FY CY ++VQGAKNV++ACREC
Sbjct: 66 SRASYFHVDLLDKRSIVKVLEGSSVVFYMDVAGVDVNNFYTCYKLMVQGAKNVISACREC 125
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
+VRRL+YNS+ADVV G HDI +GDE+L WK + + DLKAQAEAL+L AN+IDGLLT
Sbjct: 126 RVRRLIYNSSADVVVGGLHDIRDGDESLAYPWKTNNTLSDLKAQAEALILSANDIDGLLT 185
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
C+LRPSNVFGPGDT+ VP + LA+ G++KFIIG+G+N+SDFT+ ENV HAH+CA EAL+
Sbjct: 186 CSLRPSNVFGPGDTEFVPYFLKLARYGFSKFIIGTGDNLSDFTFSENVTHAHICAEEALN 245
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
+ VSVAG FFITNLEP+KFW+FLS++LEGL YQRPFIKLP +V YI+ ++KW+HEKL
Sbjct: 246 FQTVSVAGKTFFITNLEPMKFWEFLSLLLEGLEYQRPFIKLPAKLVQYILSVLKWVHEKL 305
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G R +++ L + QLAS TRTF+C+AAQK IGYSP+VSLEEGV+ TI+SFSHLARDSS
Sbjct: 306 GSRYFSYPL-LVHFFQLASYTRTFNCMAAQKDIGYSPIVSLEEGVTLTIESFSHLARDSS 364
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
+ EQSK +KLLGGGKVADILLW++EKK+F FLVLVLLFYWFFL G T S+AA
Sbjct: 365 FSRCCSSTEQSKADKLLGGGKVADILLWREEKKSFACFLVLVLLFYWFFLSGRTFISAAA 424
Query: 423 KFLLLLSAVLFGYGILPSNI 442
+ LL + +L+G+G LPS +
Sbjct: 425 RLLLFSTLLLYGHGFLPSKL 444
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544508|ref|XP_003540692.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 283/436 (64%), Positives = 350/436 (80%), Gaps = 4/436 (0%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAE 66
P+TCVVL GRGFVGRSLVLRLL+LG IVR+ DS QSLQL SES LL +LSS RA
Sbjct: 12 PKTCVVLGGRGFVGRSLVLRLLKLGNWIVRIADSAQSLQLHHSES--LLQQALSSSSRAS 69
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
Y VD+RD I KVL+G+ VFY+D ++ +DF CY +IVQGAKNV++ CREC+V+R
Sbjct: 70 YFHVDLRDKRSIIKVLQGSFVVFYLDIAGVDGNDFCTCYKLIVQGAKNVISVCRECRVKR 129
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
L+YNS+ADVVFDG HDI +GDE+L WK +++ DLKAQAEAL+L AN+IDGLLTC+LR
Sbjct: 130 LIYNSSADVVFDGLHDIRDGDESLAYPWKTDNMLSDLKAQAEALILSANDIDGLLTCSLR 189
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
PSNVFGPGDT+ VP + LA+ G++KFIIG+G+N+SDFT+ ENV HAH+CA EAL+ +MV
Sbjct: 190 PSNVFGPGDTEFVPYFLKLARYGFSKFIIGTGDNLSDFTFSENVTHAHICAEEALNFQMV 249
Query: 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306
S AG AFFITNLEP+KFW+FLS++LEGL YQRPFIKLP +V YI+ ++KW+H+KLG R
Sbjct: 250 SAAGKAFFITNLEPMKFWEFLSLLLEGLEYQRPFIKLPAKLVQYILSVLKWVHKKLGPRY 309
Query: 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYS 366
+++ L + QLAS TRTF+C+AAQ IGYSP+VSLEEGV+ TI+SFSHL+RDSS
Sbjct: 310 FSYPL-LVHFFQLASYTRTFNCMAAQNDIGYSPIVSLEEGVTLTIESFSHLSRDSSFPRC 368
Query: 367 RDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLL 426
F EQSK +KLLGGGKVADILLW+DEKK+F YFLVLVLLFYW FL G T SSAA+ LL
Sbjct: 369 CSFTEQSKADKLLGGGKVADILLWRDEKKSFAYFLVLVLLFYWSFLSGRTFISSAARLLL 428
Query: 427 LLSAVLFGYGILPSNI 442
L + +L+G+G LPS +
Sbjct: 429 LATLLLYGHGFLPSKL 444
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89521300|gb|ABD76542.1| 4-alphacarboxysterol-dehydrogenase/C4-decarboxylase isoform 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/434 (61%), Positives = 330/434 (76%), Gaps = 9/434 (2%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNI 442
+ L+G +PS I
Sbjct: 424 AVALYGVSFVPSKI 437
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406234|ref|NP_565998.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 [Arabidopsis thaliana] gi|229890389|sp|A9X4U2.2|HSDD3_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3; Short=At3BETAHSD/D3; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4- decarboxylase isoform 1-3; AltName: Full=Reticulon-like protein B20; Short=AtRTNLB20; AltName: Full=Sterol-4-alpha-carboxylate 3-dehydrogenase 3, decarboxylating gi|15027969|gb|AAK76515.1| putative sterol dehydrogenase [Arabidopsis thaliana] gi|20196859|gb|AAB64337.2| putative sterol dehydrogenase [Arabidopsis thaliana] gi|26450922|dbj|BAC42568.1| putative sterol dehydrogenase [Arabidopsis thaliana] gi|330255172|gb|AEC10266.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/434 (61%), Positives = 330/434 (76%), Gaps = 9/434 (2%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNI 442
+ L+G +PS I
Sbjct: 424 AVALYGVSFVPSKI 437
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828041|ref|XP_002881903.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327742|gb|EFH58162.1| 3-beta hydroxysteroid dehydrogenase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/434 (60%), Positives = 323/434 (74%), Gaps = 9/434 (2%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF GRSLV RLL LG VRV DS +L LD S+S +L D+LSSGRA YH
Sbjct: 14 KTCVVLGGRGFTGRSLVSRLLRLGNWTVRVADSGHTLHLDASDS--VLEDALSSGRASYH 71
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI K EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR L+
Sbjct: 72 SVDVRDKPQIVKATEGSYVVFYMGATDLPSHDYFDCYKVIVQGTRNVISACRESGVRNLI 131
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNS+ADVVFDGS I +GDE+L KFQ ++ D KAQAE+L+ FANN DGLLTCALR S
Sbjct: 132 YNSSADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAESLIKFANNRDGLLTCALRSS 191
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFIIGS ENMSDFTY ENV HAH+CAAEALDS M V
Sbjct: 192 IVFGPGDTEFVPFLVNLAKSGYAKFIIGSSENMSDFTYSENVCHAHICAAEALDSNMEFV 251
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V ++ L+KW HEK GL + N
Sbjct: 252 AGKDFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLFVFSLLKWTHEKEGLGS-N 310
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L D
Sbjct: 311 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKFDD 364
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVAD+LLW++EKKTF FL L L +YWFF G+T TSSAA+ L +
Sbjct: 365 TIIQSTADQLLGCGKVADLLLWRNEKKTFLSFLFLNLFYYWFFFSGNTFTSSAAQLLFIF 424
Query: 429 SAVLFGYGILPSNI 442
+ L+G +PS I
Sbjct: 425 AVALYGVAFVPSKI 438
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 467 | ||||||
| TAIR|locus:2058223 | 561 | AT2G43420 [Arabidopsis thalian | 0.809 | 0.673 | 0.630 | 9.2e-123 | |
| TAIR|locus:2057786 | 564 | 3BETAHSD/D2 "3beta-hydroxyster | 0.920 | 0.762 | 0.437 | 3.7e-87 | |
| TAIR|locus:2203771 | 439 | 3BETAHSD/D1 "3beta-hydroxyster | 0.747 | 0.794 | 0.468 | 1.6e-77 | |
| UNIPROTKB|F1S2D0 | 361 | NSDHL "Uncharacterized protein | 0.717 | 0.927 | 0.386 | 8.9e-54 | |
| ZFIN|ZDB-GENE-050417-163 | 345 | nsdhl "NAD(P) dependent steroi | 0.706 | 0.956 | 0.390 | 1.7e-52 | |
| MGI|MGI:1099438 | 362 | Nsdhl "NAD(P) dependent steroi | 0.715 | 0.922 | 0.373 | 6.5e-51 | |
| UNIPROTKB|F6XJP3 | 361 | NSDHL "Uncharacterized protein | 0.721 | 0.933 | 0.368 | 1.3e-50 | |
| UNIPROTKB|Q15738 | 373 | NSDHL "Sterol-4-alpha-carboxyl | 0.713 | 0.892 | 0.372 | 1.3e-50 | |
| UNIPROTKB|E1C279 | 346 | NSDHL "Uncharacterized protein | 0.706 | 0.953 | 0.380 | 1.7e-50 | |
| UNIPROTKB|E2QVH4 | 373 | NSDHL "Uncharacterized protein | 0.708 | 0.887 | 0.371 | 2.8e-50 |
| TAIR|locus:2058223 AT2G43420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 244/387 (63%), Positives = 299/387 (77%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKK 395
QS ++LLG GKVADILLW++EKK
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKK 390
|
|
| TAIR|locus:2057786 3BETAHSD/D2 "3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 191/437 (43%), Positives = 250/437 (57%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R CVV GRGF R LV L+ VR+ D ++ LDP E N +L + L SGR +Y
Sbjct: 10 RWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLRSGRVQYI 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+RD SQ+ K +GA VF++ A D + ++ Y + VQG +NV+ AC + V+RL+
Sbjct: 70 SADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVDVGVKRLI 129
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
Y S+ VVFDG H I NG E++ K D KA+ E L++ AN +GLLTC +RPS
Sbjct: 130 YTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLLTCCIRPS 189
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR---M 245
++FGPGD LVP LV A+ G +KFIIG G N+ DFTYVENVAHAHVCA AL S
Sbjct: 190 SIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASGGDVS 249
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
AG A+FITN+EPIKFW+F+S +L+GLGY+RP IK+P ++ I LV+ ++ LG
Sbjct: 250 TKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELTYKVLGPY 309
Query: 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAY 365
V+L S +RTFD A+ +GY+PVV L+EG+ TI SFSHL S
Sbjct: 310 GMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQS-- 367
Query: 366 SRDFNEQSKVEKLLGGGKVADILLWKDEKKXXXXXXXXXXXXXXXXXGGXXXXXXXXXXX 425
R+ SK ++LGGGKVAD LLWKD K+ G
Sbjct: 368 KRE--GPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKAL 425
Query: 426 XXXXXXXXGYGILPSNI 442
+GILP I
Sbjct: 426 LVASVFLFLHGILPEKI 442
|
|
| TAIR|locus:2203771 3BETAHSD/D1 "3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 165/352 (46%), Positives = 217/352 (61%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R CVV GRGF R LV L+ VR+ D ++ L+P E +L +++ SGR +Y
Sbjct: 10 RWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILGEAIRSGRVQYV 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+R+ +Q+ K +GA VF++ A D + ++ Y + VQG NV+ AC E V+RL+
Sbjct: 70 SADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIEVGVKRLI 129
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
Y S+ VVFDG H N DE+L K D KA+ EAL+L AN GLLTC +RPS
Sbjct: 130 YTSSPSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLLTCCIRPS 189
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR---M 245
++FGPGD +VP LV A+ G +KFIIG G N DFTYVENV HAHVCA AL S
Sbjct: 190 SIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERALASGGEVC 249
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
AG A+FITN+EPIKFW+F+S +LEGLGY+RP IK+P ++ I LV+ ++ LG
Sbjct: 250 AKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELAYKLLGPY 309
Query: 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357
+ V+L S RTFD A+ +GYSPVV L+EG+ TI SFSHL
Sbjct: 310 GMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHL 361
|
|
| UNIPROTKB|F1S2D0 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 139/360 (38%), Positives = 192/360 (53%)
Query: 5 EAIP--RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
E IP R C V+ G GF+G+ +V +LLE G V V D Q +P
Sbjct: 20 EDIPKDRKCTVIGGSGFLGQHMVEQLLERGYA-VNVFDKRQGFD-NP------------- 64
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYV--DATDLNTDDFYNCYMIIVQGAKNVVTACR 120
R ++ D+ + + L+G STVF+ A N + + Y + G KNV+ CR
Sbjct: 65 -RVQFFLGDLCNQQDLYPALKGVSTVFHCASPAPSSNNKELF--YRVNYIGTKNVIETCR 121
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-G 179
E V++L+ S+A V+F+G DI NG E L K D + K E VL AN+ D
Sbjct: 122 EAGVQKLILTSSASVIFEGV-DIKNGTEDLPYAMKPIDYYTETKILQEKTVLGANDPDKN 180
Query: 180 LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
LT A+RP +FGP D QLVP+L+ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE
Sbjct: 181 FLTTAIRPHGIFGPRDPQLVPILIEAARKGKMKFVIGNGKNLVDFTFVENVVHGHILAAE 240
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
L SR + G AF ITN EP+ FW FLS IL GL Y+ P +P V +Y+ LLV
Sbjct: 241 RL-SRDTGLGGKAFHITNDEPVPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLFV 299
Query: 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ V LA + C A+K +GY P+V++++ V T+QSF HL +
Sbjct: 300 MVISPVIQLQPTFTPMRVALAGTFHYYSCEKAKKLLGYQPLVTMDDAVERTVQSFHHLRK 359
|
|
| ZFIN|ZDB-GENE-050417-163 nsdhl "NAD(P) dependent steroid dehydrogenase-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 137/351 (39%), Positives = 196/351 (55%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+GR LV RL++ G V V D Q+ +L P + ++
Sbjct: 10 KRCTVIGGSGFLGRHLVERLVDRGYT-VNVFDIRQAYEL-PGVT--------------FY 53
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q D+ D + L+ S VF+ + +DD + + G + V+ AC E V++L+
Sbjct: 54 QGDLCDKLALVMALKEVSIVFHCASPAPGSDDGALFQRVNIDGTRTVIQACHEAGVQKLI 113
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G+ DI NG E L K D + K + E LVL A + + G LT A+RP
Sbjct: 114 LTSSASVVFEGT-DIKNGKEDLPYAKKPIDYYTETKIKQEKLVLEACSKEKGFLTVAIRP 172
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+LV+ A+ G KFIIG G N+ DFTYVENV H H+ AAE L +
Sbjct: 173 HGIFGPRDPQLVPILVDTARRGKMKFIIGDGSNLVDFTYVENVVHGHILAAEHLKADS-P 231
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG-LRT 306
+ G A+ ITN EP++FWDF+S IL GLGY P LP +V+ I LL+ +I L L
Sbjct: 232 LCGQAYHITNDEPVRFWDFMSQILVGLGYSAPRYHLPYALVYGIALLLWFISLILRPLIQ 291
Query: 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357
+ + S + LA + C A++ +GY P+V L+E V T++S+ HL
Sbjct: 292 FKPTFSPMRVA-LAGTHHYYSCARAKQDMGYRPLVPLQEAVVRTVESYPHL 341
|
|
| MGI|MGI:1099438 Nsdhl "NAD(P) dependent steroid dehydrogenase-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/353 (37%), Positives = 189/353 (53%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LLE G V V D Q +P R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLERGYT-VNVFDIHQGFD-NP--------------RVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + +++ Y + G K V+ CRE V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L S+ +
Sbjct: 190 HGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL-SQDAA 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ L+ + +
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
V LA + C A+K GY P+V+++E V T+QSF HL +D
Sbjct: 309 IQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRKD 361
|
|
| UNIPROTKB|F6XJP3 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 132/358 (36%), Positives = 192/358 (53%)
Query: 5 EAIPRT--CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
E +P C V+ G GF+G+ +V +LL G V V D Q +P
Sbjct: 20 EGLPNASKCTVIGGSGFLGQHMVEQLLARGYT-VNVFDMRQGFD-NP------------- 64
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
R ++ D+ + L+G STVF+ + ++++ Y + G KNV+ C+E
Sbjct: 65 -RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEA 123
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLL 181
V++L+ S+A V+F+G + I NG E L K D + K E VL AN+ L
Sbjct: 124 GVQKLILTSSASVIFEGVN-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKRNFL 182
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
T A+RP +FGP D QLVP+L+ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L
Sbjct: 183 TMAIRPHGIFGPRDPQLVPILIEAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL 242
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
S+ +V+G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ LLV +
Sbjct: 243 -SQDTAVSGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLLVML 301
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
L V LA + C A+K +GY P+V++++ + T+QSF +L +
Sbjct: 302 LSPVIQLQPTFTPMRVALAGTFHYYSCERARKVMGYRPLVTMDDAIERTVQSFHYLRK 359
|
|
| UNIPROTKB|Q15738 NSDHL "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 131/352 (37%), Positives = 190/352 (53%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q D + L D S R + +
Sbjct: 38 KRCTVIGGSGFLGQHMVEQLLARGYA-VNVFDIQQGF--DNPQVRFFLGDLCS--RQDLY 92
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
L+G +TVF+ + ++++ Y + G KNV+ C+E V++L+
Sbjct: 93 PA-----------LKGVNTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLI 141
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A V+F+G DI NG E L K D + K E VL AN+ + LT A+RP
Sbjct: 142 LTSSASVIFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRP 200
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L+ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR +
Sbjct: 201 HGIFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQL-SRDST 259
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ LL+ + +
Sbjct: 260 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLLSLLVMVISPVIQ 319
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
V LA + C A+K +GY P+V++++ + T+QSF HL R
Sbjct: 320 LQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLRR 371
|
|
| UNIPROTKB|E1C279 NSDHL "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 135/355 (38%), Positives = 188/355 (52%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ CVV+ G GF+G+ +V +LL+ G V V D + D R ++
Sbjct: 10 KKCVVIGGSGFLGQHMVEKLLDKGYS-VNVFDIQKRFDHD---------------RVQFF 53
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+ S F+ + ++D+ Y + G K V+ AC+E V++LV
Sbjct: 54 LGDLCNKEALLPALQDVSVAFHCASPAPSSDNKELFYKVNFMGTKAVIEACKEAGVQKLV 113
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRP 187
S+A VVF+G+ DI NG E L K D + K E VL AN+ D T A+RP
Sbjct: 114 LTSSASVVFEGT-DIKNGTEDLPYAKKPIDYYTETKILQEKEVLSANDPDNNFFTTAIRP 172
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L+ AK G KFIIG G+N+ DFTYVENV H H+ AAE L +
Sbjct: 173 HGIFGPRDPQLVPILIQAAKSGKMKFIIGDGKNLVDFTYVENVVHGHILAAEHL-RKDSP 231
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIIL---LVKWIHEKLGL 304
V G AF ITN EPI FW F+S IL GL Y P +P + +Y+ L LV W+ L +
Sbjct: 232 VCGKAFHITNDEPIPFWAFMSRILTGLNYDAPKYYIPYWLAYYLALFLSLVLWLLSPLII 291
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ V LA + C A++ +GY PVVSL+E + T+QS+ HL R
Sbjct: 292 IKPTFTPMR---VALAGTFHYYSCERAKRDMGYKPVVSLDEAIDRTLQSYPHLRR 343
|
|
| UNIPROTKB|E2QVH4 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 130/350 (37%), Positives = 189/350 (54%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
C V+ G GF+G+ +V +LL G V V D Q +P R ++
Sbjct: 40 CTVIGGSGFLGQHMVEQLLARGYT-VNVFDMRQGFD-NP--------------RVQFFLG 83
Query: 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
D+ + L+G STVF+ + ++++ Y + G KNV+ C+E V++L+
Sbjct: 84 DLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLILT 143
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSN 189
S+A V+F+G + I NG E L K D + K E VL AN+ LT A+RP
Sbjct: 144 SSASVIFEGVN-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKRNFLTMAIRPHG 202
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVA 249
+FGP D QLVP+L+ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L S+ +V+
Sbjct: 203 IFGPRDPQLVPILIEAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL-SQDTAVS 261
Query: 250 GMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309
G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ LLV + L
Sbjct: 262 GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLLVMLLSPVIQLQ 321
Query: 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
V LA + C A+K +GY P+V++++ + T+QSF +L +
Sbjct: 322 PTFTPMRVALAGTFHYYSCERARKVMGYRPLVTMDDAIERTVQSFHYLRK 371
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9X4U2 | HSDD3_ARATH | 1, ., 1, ., 1, ., 1, 7, 0 | 0.6175 | 0.9100 | 0.7575 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.1.1.170 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 467 | |||
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-132 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 5e-81 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 1e-70 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 3e-48 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 8e-34 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-33 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 1e-26 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 9e-20 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 3e-17 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 5e-15 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 9e-15 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-12 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 1e-10 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 2e-10 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 4e-10 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 3e-09 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 5e-09 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 1e-08 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 2e-08 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-08 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 3e-08 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 5e-08 | |
| pfam02453 | 164 | pfam02453, Reticulon, Reticulon | 5e-08 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 6e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 8e-08 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 2e-07 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 3e-07 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 5e-07 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 9e-06 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 7e-05 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 1e-04 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 1e-04 | |
| PLN02583 | 297 | PLN02583, PLN02583, cinnamoyl-CoA reductase | 2e-04 | |
| PRK05865 | 854 | PRK05865, PRK05865, hypothetical protein; Provisio | 2e-04 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 3e-04 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 3e-04 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 3e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 5e-04 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 5e-04 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 8e-04 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 9e-04 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 9e-04 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 0.001 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 0.001 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 0.001 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 0.002 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 0.002 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-132
Identities = 170/351 (48%), Positives = 220/351 (62%), Gaps = 22/351 (6%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+C+V+ G GF+GR LV +LL G V V D + +LDPS SSGR ++H
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPS----------SSGRVQFHT 50
Query: 70 VDVRDISQIKKVL--EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+ D ++K +G + VF+ + D ++D Y + VQG +NV+ ACR+C V++L
Sbjct: 51 GDLTDPQDLEKAFNEKGPNVVFHTASPDHGSNDDL-YYKVNVQGTRNVIEACRKCGVKKL 109
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALR 186
VY S+A VVF+G DI NGDE+L K QD + KA AE LVL AN+ GLLTCALR
Sbjct: 110 VYTSSASVVFNG-QDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTCALR 168
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
P+ +FGPGD QLVP L+ AK G TKF IG G N+ DFTYVENVAHAH+ AA+AL S
Sbjct: 169 PAGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILAADALLSSSH 228
Query: 247 S--VAGMAFFITNLEPIKFWDFLSIILEGLGYQR-PFIKLPTGVVWYIILLVKWIHEKLG 303
+ VAG AFFITN EPI FWDF I EGLGY+R P IKLP V Y+ L++W + LG
Sbjct: 229 AETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLASLLEWTCKVLG 288
Query: 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ + V L TR F+ A+K +GY+PVV+LEEG+ T+Q F
Sbjct: 289 KEPT---FTP-FRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 5e-81
Identities = 109/287 (37%), Positives = 142/287 (49%), Gaps = 22/287 (7%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+GR +V LL G+ VRV D S LL D Y +
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRV--------FDLRFSPELLEDFSKLQVITYIEG 52
Query: 71 DVRDISQIKKVLEGASTVFYVDA-TDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
DV D +++ L+G+ V + A D+ + V+G +NV+ AC + VR LV
Sbjct: 53 DVTDKQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLV 112
Query: 129 YNSTADVVFD--GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DG--LL 181
Y S+ +VV I NGDET QD + KA AE LVL AN +G L
Sbjct: 113 YTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKNGGRLY 172
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TCALRP+ +FG GD L P LV L K G KF G +SD YV NVA AH+ AA AL
Sbjct: 173 TCALRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNVAWAHILAARAL 232
Query: 242 DSR--MVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQRP-FIKLP 284
S+AG +FI++ P + DF +L+ LG + P IKLP
Sbjct: 233 QDPKKASSIAGQFYFISDDTPHNSYDDFNRTLLKALGLRLPSSIKLP 279
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 1e-70
Identities = 125/350 (35%), Positives = 184/350 (52%), Gaps = 24/350 (6%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+ +V G GF G LV +LLE G VR D ++ ++ E+ +
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPP----GEALSAWQHPNI-----EFLK 51
Query: 70 VDVRDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+ D + +++ L GA VF+ A D Y + + V G +NV+ AC+ C V++
Sbjct: 52 GDITDRNDVEQALSGADCVFHTAAIVPLAGPRDLY--WEVNVGGTQNVLDACQRCGVQKF 109
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
VY S++ V+F G +IHNGDETL D+ + KA AE +VL AN D LLTCALRP
Sbjct: 110 VYTSSSSVIFGGQ-NIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRP 168
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL--DSRM 245
+ +FGPGD LVP+L A+ G KF+ G G N+ DFTYV N+AHAH+ AA AL
Sbjct: 169 AGIFGPGDQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAALVKGK-- 226
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGY-QRPFIKLPTGVVWYIILLVKWIHEKLGL 304
+++G +FIT+ EP ++ L + + LG+ RP I+L + + LL + + LG
Sbjct: 227 -TISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAYCAALLSELVSFMLG- 284
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ S + F AQK +GY+P S EEG+ T+ +
Sbjct: 285 PYFVFSPFYVRALVT---PMYFSIAKAQKDLGYAPRYSNEEGLIETLNWY 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-48
Identities = 108/345 (31%), Positives = 179/345 (51%), Gaps = 33/345 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+ ++ G G+ G L L + G + D LP+ + ++ Q
Sbjct: 1 SVLITGGGGYFGFRLGCALAKSG---------VHVILFDIRRPQQELPEGI-----KFIQ 46
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRR 126
DVRD+SQ++K + G VF++ + ++ + N +I V+G +N++ C +V R
Sbjct: 47 ADVRDLSQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRRRVPR 106
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD----LKAQAEALVLFANNI----- 177
L+Y ST +V+F G I NGDE+L + DL D K+ AE LVL ANN+
Sbjct: 107 LIYTSTFNVIF-GGQPIRNGDESLP--YLPLDLHVDHYSRTKSIAEQLVLKANNMPLPNN 163
Query: 178 DGLL-TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
G+L TCALRP+ ++GPG+ + +P +V+ + G F+ G +++ +F +V+N+ AH+
Sbjct: 164 GGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFMFVYGDPKSLVEFVHVDNLVQAHIL 223
Query: 237 AAEALDSRMVSVA-GMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLV 295
AAEAL + +A G A+FI++ P+ ++F ++EGLGY P ++LP +V++ L
Sbjct: 224 AAEALTTAKGYIASGQAYFISDGRPVNNFEFFRPLVEGLGYSFPSLRLPLSLVYFFAFLT 283
Query: 296 KWIHEKLGLRTYN-HSLSACYIVQLASRTRTFDCIAAQKHIGYSP 339
+ +H LG N L V T F A+ +GY P
Sbjct: 284 EMVHFALG-PICNFQPLLTRTEVYKTGVTHYFSIEKARAELGYEP 327
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 8e-34
Identities = 86/356 (24%), Positives = 126/356 (35%), Gaps = 62/356 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G LV RLL G VR D E+ +D+ D
Sbjct: 8 GAGFIGSHLVERLLAAGH-DVRGLD------------RLRDGLDPLLSGVEFVVLDLTDR 54
Query: 76 SQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ ++ +G D N D + V G N++ A R V+R V+
Sbjct: 55 DLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFA 114
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+ VV+ G DE L + + K AE L+ + GL LRP NV
Sbjct: 115 SSVSVVY-GDPPPLPIDEDLG-PPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNV 172
Query: 191 FGPGD-----TQLVPLLVNLAKPGWTKF-IIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
+GPGD + +V + G I G G DF YV++VA A + A E D
Sbjct: 173 YGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG 232
Query: 245 MVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303
F I + I + + E +G + P I YI L +
Sbjct: 233 -------VFNIGSGTAEITVRELAEAVAEAVGSKAPLIV-------YIPLGRRGD----- 273
Query: 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ D A+ +G+ P VSLEEG++ T++
Sbjct: 274 ----------------LREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKLE 313
|
Length = 314 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 1e-33
Identities = 101/370 (27%), Positives = 161/370 (43%), Gaps = 47/370 (12%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCI--VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
C+V G GF+G+ ++ LLE + + +RV D +L S ++
Sbjct: 2 CLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTD-----I 56
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFY-----NCYMIIVQGAKNVVTACRECK 123
+ D++D+S + + +G S V + A D F + V G + V+ AC +
Sbjct: 57 EGDIKDLSFLFRACQGVSVVIHTAAI---VDVFGPPNYEELEEVNVNGTQAVLEACVQNN 113
Query: 124 VRRLVYNSTADVVFDGS--HDIHNG--DETLTCCWKFQDLMCDLKAQAEALVLFAN---- 175
V+RLVY S+ +V I NG D K AE +VL AN
Sbjct: 114 VKRLVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPP--YASSKLLAENIVLNANGAPL 171
Query: 176 -NIDGLLTCALRPSNVFGPGDTQLVPLLVN--LAKPGWTKFII-GSGENMSDFTYVENVA 231
L+TCALRP ++G G + + + + L GW I GSG N YV NVA
Sbjct: 172 KQGGYLVTCALRPMYIYGEG-SHFLTEIFDFLLTNNGWLFPRIKGSGVN--PLVYVGNVA 228
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE---GLGYQRPFIKLPTGVV 288
AH+ AA+AL ++ G +FI++ P + + L GL + + +P ++
Sbjct: 229 WAHILAAKALQVPDKAIRGQFYFISDDTPHNSYSDFNYELLKELGLRLKTSWWYVPLFLL 288
Query: 289 WYIILL---VKWIHEKLGLR---TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS 342
+++ L V ++ LR Y + + V L + TF + AQ+H GY P+ S
Sbjct: 289 YFLAFLLEIVSFL-----LRPYVKYRPRYNR-HAVALTNSMFTFSYLKAQRHFGYMPLFS 342
Query: 343 LEEGVSSTIQ 352
EE T +
Sbjct: 343 WEESKERTAK 352
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 88/350 (25%), Positives = 129/350 (36%), Gaps = 52/350 (14%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
GF+G +LV LL G + +VR L E + D+ D
Sbjct: 8 GFLGSNLVRALLAQGYRVRALVRSGSDAVLLD---------------GLPVEVVEGDLTD 52
Query: 75 ISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ + ++G VF++ A T L D Y V+G +NV+ A E VRR+V+ S+
Sbjct: 53 AASLAAAMKGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNVLDAALEAGVRRVVHTSSI 112
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDL---KAQAEALVL-FANNIDGLLTCALRPSN 189
+ G DE T W + D K AE VL A GL + PS
Sbjct: 113 AAL--GGPPDGRIDE--TTPWNERPFPNDYYRSKLLAELEVLEAAAE--GLDVVIVNPSA 166
Query: 190 VFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
VFGPGD L V G G + F V +VA H+ A E
Sbjct: 167 VFGPGDEGPTSTGLDVLDYLNGKLPAYPPGG---TSFVDVRDVAEGHIAAMEK------G 217
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV---VWYIILLVKWIHEKLGL 304
G + + E + F + E G + P +P + V + L + K L
Sbjct: 218 RRGERYILGG-ENLSFKQLFETLAEITGVKPPRRTIPPWLLKAVAALSELKARLTGKPPL 276
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
T ++ R + A++ +GYSP LEE + T+
Sbjct: 277 LTP-------RTARVLRRNYLYSSDKARRELGYSP-RPLEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 9e-20
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 39/248 (15%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G LV RLL+ G ++ + +S L+ GR +H+ D
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNT-------------GRIRFHEGD 48
Query: 72 VRDISQIKKVLEGAS--TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ D ++++L V ++ A + +D + V G ++ A R V+R
Sbjct: 49 LTDPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKR 108
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------KAQAEALVLFANNIDGL 180
V+ S+++V D + E + L K AE LV GL
Sbjct: 109 FVFASSSEVYGDVADPP--ITED--------TPLGPLSPYAAAKLAAERLVEAYARAYGL 158
Query: 181 LTCALRPSNVFGPGD-----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235
LR NV+GPG+ T ++P L+ G ++G G DF YV++VA A +
Sbjct: 159 RAVILRLFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAIL 218
Query: 236 CAAEALDS 243
A E D
Sbjct: 219 LALEHPDG 226
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 94/359 (26%), Positives = 139/359 (38%), Gaps = 71/359 (19%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+G LV RLLE G V V D+ L + +L ++ +
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGH-EVIVLDN-----LSTGKKENLPEVK---PNVKFIEG 52
Query: 71 DVRDISQIKKVLEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+RD ++ EG VF+ A + +D + + V G N++ A R+ V+R
Sbjct: 53 DIRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRF 112
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCC----WKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
VY S++ V G DE + K E + GL T
Sbjct: 113 VYASSSSVY--GDPPYLPKDEDHPPNPLSPYAVS------KYAGELYCQVFARLYGLPTV 164
Query: 184 ALRPSNVFGPG-DTQ-----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+LR NV+GP D ++P+ + A G I G GE DFTYVE+V A++ A
Sbjct: 165 SLRYFNVYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANLLA 224
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP--TGVVWYIILLV 295
A A G + I + + +I E LG + + P G V
Sbjct: 225 ATA------GAGGEVYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDV------- 271
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
HSL D A+K +G+ P VS EEG+ T++ F
Sbjct: 272 ------------RHSL--------------ADISKAKKLLGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-15
Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 49/233 (21%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+G LV RLLE G H+V
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERG-----------------------------------HEV 25
Query: 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
V D + V+ A+ V + D+ + V G N++ A R+ V+R VY
Sbjct: 26 VVIDRLDV--VVHLAALV----GVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYA 79
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+A V+ E + K AE L+ GL LR +NV
Sbjct: 80 SSA-SVYG---SPEGLPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 191 FGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
+GPG +V + A G + G G DF +V++V A + A E
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALE 188
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 9e-15
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V GF+G LV RLL+ G VR T + D + LL + R + + D+
Sbjct: 3 VTGASGFIGSWLVKRLLQRGY-TVRAT--VRDPG-DEKKVAHLLELEGAKERLKLFKADL 58
Query: 73 RDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMI--IVQGAKNVVTACRECK-VRRL 127
D ++G VF+V A+ D +++D MI V+G NV+ AC + K V+R+
Sbjct: 59 LDYGSFDAAIDGCDGVFHV-ASPVDFDSEDPEE-EMIEPAVKGTLNVLEACAKAKSVKRV 116
Query: 128 VY-NSTADVVF-DGSHDIHNGDETLTCCW-------KFQDLMCDLKAQAEALVLFANNID 178
V+ +S A VV+ + DE+ CW K + K AE +
Sbjct: 117 VFTSSVAAVVWNPNRGEGKVVDES---CWSDLDFCKKTKLWYALSKTLAEKAAWEFAEEN 173
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY----VENVAHAH 234
GL + PS V GP + L + G+ E + + V++VA AH
Sbjct: 174 GLDLVTVNPSLVVGPFLQPSLNSSSQLI----LSLLKGNAEMYQNGSLALVHVDDVADAH 229
Query: 235 VCAAEALDSR 244
+ E +
Sbjct: 230 ILLYEKPSAS 239
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 42/245 (17%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G GF+G LV LLE G VRV D S+ P L G +Y + D
Sbjct: 3 LIVGGNGFIGSHLVDALLEEG-PQVRVFDR------------SIPPYELPLGGVDYIKGD 49
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTA------CRECKVR 125
+ + ++ L G TV ++ +T N I+ NV C +
Sbjct: 50 YENRADLESALVGIDTVIHLASTTNPATSNKN---PILDIQTNVAPTVQLLEACAAAGIG 106
Query: 126 RLVYNSTADVVFDGSHDIHNGDETLT----CCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
++++ S+ V+ G + E+ + L E + + GL
Sbjct: 107 KIIFASSGGTVY-GVPEQLPISESDPTLPISSYGISKLA------IEKYLRLYQYLYGLD 159
Query: 182 TCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
LR SN +GPG Q ++P+ +N G I G GE++ D+ Y++++ A
Sbjct: 160 YTVLRISNPYGPG--QRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLVEAL 217
Query: 235 VCAAE 239
+
Sbjct: 218 MALLR 222
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 89/339 (26%), Positives = 132/339 (38%), Gaps = 47/339 (13%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL--LPDSLSSGRAEYHQV 70
V GFVG ++V LLE G VRV L S+ +L L + G
Sbjct: 5 VTGATGFVGSAVVRLLLEQG-EEVRV------LVRPTSDRRNLEGLDVEIVEG------- 50
Query: 71 DVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D+RD + ++K + G +F+V A L D Y V+G +N++ A E V R+VY
Sbjct: 51 DLRDPASLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVY 110
Query: 130 NST-ADVVFDGSHDIHNGDETLTCCWKFQDLM---CDLKAQAEALVLFANNIDGLLTCAL 185
S+ A + G DET D++ K AE L GL +
Sbjct: 111 TSSVATLGVRGDGTP--ADETTPS--SLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIV 166
Query: 186 RPSNVFGPGDTQLVP---LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
PS GP D + P ++V+ G + +G N+ V++VA H+ A E
Sbjct: 167 NPSTPIGPRDIKPTPTGRIIVDFLN-GKMPAYVDTGLNLVH---VDDVAEGHLLALERGR 222
Query: 243 S--RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
R +I E + L + E G P +KLP + +L V W E
Sbjct: 223 IGER---------YILGGENLTLKQILDKLAEITGRPAPRVKLPRWL----LLPVAWGAE 269
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSP 339
L T V++A + F A + +GY
Sbjct: 270 ALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQ 308
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 73/358 (20%), Positives = 130/358 (36%), Gaps = 60/358 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V GF+G L RLL G VR D S ++ L D+ R + D
Sbjct: 3 LVTGADGFIGSHLTERLLREG-HEVRALDIYNSF------NSWGLLDNAVHDRFHFISGD 55
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNC----YMIIVQGAKNVVTACRECKVRRL 127
VRD S+++ +++ VF++ A + Y V G NV+ A +R+
Sbjct: 56 VRDASEVEYLVKKCDVVFHL-AALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRV 114
Query: 128 VYNSTADVV-------FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
V+ ST++V D H + + K + K A+ L GL
Sbjct: 115 VHTSTSEVYGTAQDVPIDEDHPLLYIN-------KPRSPYSASKQGADRLAYSYGRSFGL 167
Query: 181 LTCALRPSNVFGPG--DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
+RP N +GP ++P +++ G +G G DF +V++ A +
Sbjct: 168 PVTIIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFIDIL 227
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
+A+ G + E I + ++ + ++L+ +
Sbjct: 228 DAI-----EAVGEIINNGSGEEISIGNPAVELIVEELGE--------------MVLIVYD 268
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIA-AQKHIGYSPVVSLEEGVSSTIQSFS 355
+ Y+ R I A++ +G+ P SL +G+ TI+ F
Sbjct: 269 DHREYRPGYSEV------------ERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWFK 314
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 47/189 (24%), Positives = 68/189 (35%), Gaps = 19/189 (10%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G +GR L RL + I LD S + EY ++D
Sbjct: 2 LVTGAAGGLGRLLARRLAASPRVI-------GVDGLDRR------RPPGSPPKVEYVRLD 48
Query: 72 VRDISQIKKVLEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+RD + E + A L+ D + I V G +NV+ AC V R+V
Sbjct: 49 IRDPAAADVFREREADAVVHLAFILDPPRDGAERHRINVDGTQNVLDACAAAGVPRVVVT 108
Query: 131 STADVVFDGSHD--IHNGDETLTCCWKFQDLMCDLKAQAEALV-LFANNIDGLLTCALRP 187
S+ V + D L +F KA+ E L+ F L LRP
Sbjct: 109 SSVAVYGAHPDNPAPLTEDAPLRGSPEFAY--SRDKAEVEQLLAEFRRRHPELNVTVLRP 166
Query: 188 SNVFGPGDT 196
+ + GPG
Sbjct: 167 ATILGPGTR 175
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 65/348 (18%), Positives = 106/348 (30%), Gaps = 60/348 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
VL G +GR + L G + V+ S L P E D
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSRSGSKLAWLPG--------------VEIVAADA 49
Query: 73 RDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D S + GA +++ T + +NVV A +LV
Sbjct: 50 MDASSVIAAARGADVIYHCANPAYTRWEEL------FPPLM--ENVVAAAEAN-GAKLVL 100
Query: 130 NSTADVVFDGSHDIHNGDETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
V G E K + ++A+ E +L A+ + +R
Sbjct: 101 PGN--VYMYGPQAGSPITEDTPFQPTTRKGR-----IRAEMEERLLAAHAKGDIRALIVR 153
Query: 187 PSNVFGPGDTQLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245
+ +GPG A G T G+ + ++TY+ +VA A V AE D+
Sbjct: 154 APDFYGPGAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDVARALVTLAEEPDA-- 211
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
G A+ + I + ++I G +P + L + E
Sbjct: 212 ---FGEAWHLPGAGAITTRELIAIAARAAGRPPKVRVIPKWTLRLAGLFDPLMRE----- 263
Query: 306 TYNHSLSACYIVQLASRTRT---FDCIAAQKHIGYSPVVSLEEGVSST 350
IV++ D + G P L+E + T
Sbjct: 264 ----------IVEMMYLWEEPFILDSSKLEATFGEIPHTPLDEAIRQT 301
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 56/235 (23%), Positives = 87/235 (37%), Gaps = 53/235 (22%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIV---RVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
V GF+GR +V RL + G ++ R + L + G+
Sbjct: 2 VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLV-----------MGDLGQVL 50
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNT--DDFYNCYMIIVQGAKNVVTACRECKV 124
+ + D+RD I+K LEG+ V + T F + + V+G + + A +E V
Sbjct: 51 FVEFDLRDDESIRKALEGSDVVINLVGRLYETKNFSFED---VHVEGPERLAKAAKEAGV 107
Query: 125 RRLVYNST--ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL--FANNIDGL 180
RL++ S AD S + + KA+ E V F
Sbjct: 108 ERLIHISALGADAN-SPSKYLRS------------------KAEGEEAVREAFPEAT--- 145
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI--IGSGENMSDFTYVENVAHA 233
+RPS VFG D + + L + F IG G+ YV +VA A
Sbjct: 146 ---IVRPSVVFGRED-RFLNRFAKL--LAFLPFPPLIGGGQTKFQPVYVGDVAEA 194
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 1e-08
Identities = 73/255 (28%), Positives = 105/255 (41%), Gaps = 29/255 (11%)
Query: 1 MPFDEAIP--RTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSL 55
MP D A P +T V G++ +V LLE G K VR D ++ L E
Sbjct: 1 MPVDVASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--- 57
Query: 56 LPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNV 115
R + D++D +K ++G VF+ + TDD V GAK V
Sbjct: 58 -----GKERLILCKADLQDYEALKAAIDGCDGVFHTASP--VTDDPEQMVEPAVNGAKFV 110
Query: 116 VTACRECKVRRLVYNSTADVVF-DGSHDIHN-GDET----LTCCWKFQDLMCDLKAQAEA 169
+ A E KV+R+V S+ V+ D + D DE+ L C ++ C K AE
Sbjct: 111 INAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQ 170
Query: 170 LVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY--- 226
G+ L P V GP L P +N + K++ GS + ++ T
Sbjct: 171 AAWETAKEKGVDLVVLNPVLVLGP---PLQP-TINASLYHVLKYLTGSAKTYANLTQAYV 226
Query: 227 -VENVAHAHVCAAEA 240
V +VA AHV EA
Sbjct: 227 DVRDVALAHVLVYEA 241
|
Length = 342 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 41/189 (21%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
V+ G GR LV LL G + R + S P
Sbjct: 2 AVIGATGKTGRRLVKELLARGHQVTALSR--------------NPSKAPAP----GVTPV 43
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q D+ D++ + + L G V VDA DD G K+++ A VRR+V
Sbjct: 44 QKDLFDLADLAEALAGVDAV--VDAFGARPDD--------SDGVKHLLDAAARAGVRRIV 93
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S A + D +A+A A L GL +RP
Sbjct: 94 VVSAAGLYRDEPG--------TFRLDDAPLFPPYARAKAAAEELLRA--SGLDWTIVRPG 143
Query: 189 NVFGPGDTQ 197
+F
Sbjct: 144 ALFDEEGET 152
|
Length = 182 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 109 VQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL----- 163
V G ++ A R+ V+R V+ ST D V+ D ET +
Sbjct: 102 VLGTYTLLEAARKYGVKRFVHIST-DEVYGDLLDDGEFTET--------SPLAPTSPYSA 152
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGPG--DTQLVPLLVNLAKPGWTKFIIGSGEN 220
KA A+ LV + GL R SN +GP +L+PL + A G I G G N
Sbjct: 153 SKAAADLLVRAYHRTYGLPVVITRCSNNYGPYQFPEKLIPLFILNALDGKPLPIYGDGLN 212
Query: 221 MSDFTYVENVAHA 233
+ D+ YVE+ A A
Sbjct: 213 VRDWLYVEDHARA 225
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 34/183 (18%)
Query: 13 VLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+L GF+GR+L LLE G +VR T +P +
Sbjct: 3 ILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKEDQEP---------------VAVVE 47
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D+RD+ + ++G V ++ +T DF V+G +NV+ A +E V+ ++
Sbjct: 48 GDLRDLDSLSDAVQGVDVVIHLAGAPRDTRDFCEVD---VEGTRNVLEAAKEAGVKHFIF 104
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
S+ GD +KA+ EA++ A L +RP
Sbjct: 105 ISSLGA---------YGDLHEETEPSPSSPYLAVKAKTEAVLREA----SLPYTIVRPGV 151
Query: 190 VFG 192
++G
Sbjct: 152 IYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 75/339 (22%), Positives = 128/339 (37%), Gaps = 58/339 (17%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+GR+LV +LL G+ + + + +PS + LPD S VD
Sbjct: 9 GFIGRALVDKLLSRGEEVRIAVRNAE--NAEPSVVLAELPDIDSFTDLF-LGVDA----- 60
Query: 78 IKKVLEGASTVFYVDATDLNTDDFY---NCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
V+ A+ V ++ + Y N + + + A V+R V+ S+
Sbjct: 61 ---VVHLAARVHVMNDQGADPLSDYRKVN-----TELTRRLARAAARQGVKRFVFLSSVK 112
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLM---CDL---KAQAEALVLFANNIDGLLTCALRPS 188
V NG+ T+ + D K +AE +L DG+ LRP
Sbjct: 113 V---------NGEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASDGMEVVILRPP 163
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV-CAAEALDSRMVS 247
V+GPG L+ L G G+ +N ++N+ A C +
Sbjct: 164 MVYGPGVRGNFARLMRLIDRG-LPLPPGAVKNRRSLVSLDNLVDAIYLCISLP------K 216
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
A F +++ P+ + + I LG + +P G L+++ + LG R
Sbjct: 217 AANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAG-------LLRFAAKLLGKR-- 267
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
++Q + +D Q +G+ P +SLEEG
Sbjct: 268 -------AVIQRLFGSLQYDPEKTQNELGWRPPISLEEG 299
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|217046 pfam02453, Reticulon, Reticulon | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-08
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 384 VADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIN 443
VAD+LLW+D KK+ F L++++ F L G +L S + LLLL AV F + + +N
Sbjct: 1 VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60
Query: 444 SDKR 447
+
Sbjct: 61 AVPE 64
|
Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G G S+V LL+ VR L DP +S +L++ E Q D
Sbjct: 2 LVFGATGKQGGSVVRALLKDPGFKVRA------LTRDP---SSPAAKALAAPGVEVVQGD 52
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D ++ L+G VF L TD + + KNVV A + V+ V++S
Sbjct: 53 LDDPESLEAALKGVYGVF------LVTDFWEAGGEDEIAQGKNVVDAAKRAGVQHFVFSS 106
Query: 132 TADV 135
DV
Sbjct: 107 VPDV 110
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 8e-08
Identities = 57/253 (22%), Positives = 87/253 (34%), Gaps = 41/253 (16%)
Query: 13 VLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQ--SLQLDPSESNSLLPDSLSSGRAEY 67
V GFV +V +LLE G + VR + + LD L GR E
Sbjct: 3 VTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLD-------LDA--KPGRLEL 53
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECK-VR 125
D+ D +V++G + VF+V ++ D + G N + A K V+
Sbjct: 54 AVADLTDEQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVK 113
Query: 126 RLVYNSTADVVF--DGSHDIHNGDETLTCCWKFQDLMCDL----------KAQAEALVL- 172
R V S+A V + + DE W ++ D K AE
Sbjct: 114 RFVLTSSAGSVLIPKPNVEGIVLDEK---SWNLEEFDSDPKKSAWVYAASKTLAEKAAWK 170
Query: 173 FA--NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGENMSD---FTY 226
FA NNID + P+ G P A T + + + +
Sbjct: 171 FADENNID---LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVH 227
Query: 227 VENVAHAHVCAAE 239
V ++ AH+ E
Sbjct: 228 VVDICLAHIGCLE 240
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 68/301 (22%), Positives = 110/301 (36%), Gaps = 43/301 (14%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
V G GF+GR LV RLLE G +VR ++ + + L + R
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHER-------IEEAGLEADRVR- 52
Query: 68 HQVDVRDISQI---------KKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVT 117
V D++Q +++ V + A D + + + G ++V+
Sbjct: 53 --VLEGDLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAP-NEDAWRTNIDGTEHVLE 109
Query: 118 ACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI 177
++R Y STA V G+ + + + L F++ KA+AE LV A
Sbjct: 110 LAARLDIQRFHYVSTAYV--AGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQ 167
Query: 178 DGLLTCALRPSNVFGP---GDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230
L RPS V G G + L LL LAK G + G+ + V+ V
Sbjct: 168 IPLTV--YRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVDYV 225
Query: 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPI---KFWDFLSIILEGLGYQRPFIKLPTGV 287
A A V ++ ++ G F +T+ P + D G + P
Sbjct: 226 ADAIVYLSKKPEA-----NGQIFHLTDPTPQTLREIADLFKSAFLSPGLLVLLMNEPNAS 280
Query: 288 V 288
+
Sbjct: 281 L 281
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 64/298 (21%), Positives = 104/298 (34%), Gaps = 64/298 (21%)
Query: 11 CVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
+V G+VG LV RLL+ G + +VR + D S R
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPEKLA--------------DRPWSERVTV 46
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
+ D+ D ++ LEG T +Y+ + + DF + A+N A R V+R+
Sbjct: 47 VRGDLEDPESLRAALEGIDTAYYLVHSMGSGGDFEE---ADRRAARNFARAARAAGVKRI 103
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE-ALVLFANNIDGLLTCALR 186
+Y I G+E L L+++AE +L A + LR
Sbjct: 104 IYLGGL---------IPKGEE----------LSPHLRSRAEVGEILRAGGVP---VTELR 141
Query: 187 PSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+ + G G LV L + P W + +V V A +
Sbjct: 142 AAVIIGSGSASFEMVRYLVERLPVMITPRWVN-------TPCQPIAIRDVLEYLVAALDR 194
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
+ AG F I + + + D + E G +R + +P V L W+
Sbjct: 195 PAT-----AGETFEIGGPDVLSYKDMMERFAEVRGLRRWILPVP---VLTPRLSSLWV 244
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 64/285 (22%), Positives = 105/285 (36%), Gaps = 55/285 (19%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+ +V +LL+ G VR T + S ++ +LL + + R E+ VD D++
Sbjct: 9 GFIASHIVEQLLKAG-YKVRGTVRSLS---KSAKLKALLKAAGYNDRLEFVIVD--DLTA 62
Query: 78 ---IKKVLEG-------ASTVFYVDATDLNTDDFYNCYMII--VQGAKNVVTACRECK-V 124
+ L+G AS + DD +I V+G NV+ A + V
Sbjct: 63 PNAWDEALKGVDYVIHVASPFPFTGPD--AEDD-----VIDPAVEGTLNVLEAAKAAGSV 115
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLT------CCWKFQDLM---CDLKAQAE--ALVLF 173
+R+V S+ V D + + + T + + K AE A
Sbjct: 116 KRVVLTSSVAAVGDPTAEDP--GKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEFV 173
Query: 174 ANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGEN-----MSDFTYV 227
N + P V GP L+ +N + K + G + V
Sbjct: 174 KENKPKFELITINPGYVLGP---SLLADELN-SSNELINKLLDGKLPAIPPNLPFGYVDV 229
Query: 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272
+VA AHV AL+S AG F ++ P F + ++ E
Sbjct: 230 RDVADAHV---RALESP--EAAGQRFIVSA-GPFSFQEIADLLRE 268
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 9e-06
Identities = 77/387 (19%), Positives = 118/387 (30%), Gaps = 122/387 (31%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+V GF+G L RL G + + P++ + E+H
Sbjct: 2 RALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDD------------EFHL 49
Query: 70 VDVRDISQIKKVLEGASTVFYVDA--------TDLNTDDFYNCYMIIVQGAKNVVTACRE 121
VD+R++ K EG VF++ A + YN +I N++ A R
Sbjct: 50 VDLREMENCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLI----NFNMLEAARI 105
Query: 122 CKVRRLVYNSTA-------------------DVVFDGSHDIHNGDETLTCCWKFQDLMCD 162
V R ++ S+A D D + W+
Sbjct: 106 NGVERFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYG--------WE------- 150
Query: 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLVPLL----VNLAKPGWTKF 213
K E L N G+ T +R N++GP G + P V AK G
Sbjct: 151 -KLATERLCQHYNEDYGIETRIVRFHNIYGPRGTWDGGREKAPAAMCRKVATAKDGDRFE 209
Query: 214 IIGSGENMSDFTYVENVAHAHVCAAEAL--------DSRMVSVAGMAFFITNLEPIKFWD 265
I G G FTY+++ E+ MVS+ +A + +
Sbjct: 210 IWGDGLQTRSFTYIDDCVEGLRRLMESDFGEPVNLGSDEMVSMNELAEMVLSFS----GK 265
Query: 266 FLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325
L II + P P GV R R
Sbjct: 266 PLEII-----HHTP---GPQGV----------------------------------RGRN 283
Query: 326 FDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
D ++ +G+ P LEEG+ T
Sbjct: 284 SDNTLLKEELGWEPNTPLEEGLRITYF 310
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 35/256 (13%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+T V+ G GF+ L+ LL+ G + +T + + + L G +
Sbjct: 10 KTACVIGGTGFLASLLIKLLLQKGYAV-----NTTVRDPENQKKIAHLRALQELGDLKIF 64
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLN--TDDFYNCYMI--IVQGAKNVVTACRECK- 123
D+ D + + G VF+V AT +N ++D N MI +QG NV+ AC + K
Sbjct: 65 GADLTDEESFEAPIAGCDLVFHV-ATPVNFASEDPEN-DMIKPAIQGVHNVLKACAKAKS 122
Query: 124 VRRLVYNSTADVV----FDGSHDIHNGD-----ETLTCCWKFQDLMCDLKAQAE-ALVLF 173
V+R++ S+A V G+ + N E LT K AE A F
Sbjct: 123 VKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKF 182
Query: 174 A--NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT--KFIIGSGENMS------D 223
A NNID L+T P+ + GP T +P ++LA T +F+I + M
Sbjct: 183 AEENNID-LITVI--PTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSIS 239
Query: 224 FTYVENVAHAHVCAAE 239
T+VE+V AH+ AE
Sbjct: 240 ITHVEDVCRAHIFLAE 255
|
Length = 338 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 38/277 (13%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G LV RLLE G V V D+ S + + E + + + D
Sbjct: 3 LVTGGAGFIGSHLVDRLLEEGN-EVVVVDNLSSGRRENIEP------EFENKAFRFVKRD 55
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTD----------DFYNCYMIIVQGAKNVVTACRE 121
+ D + K + TVF++ A N D D V NV+ A R
Sbjct: 56 LLDTA-DKVAKKDGDTVFHLAA---NPDVRLGATDPDIDLEEN----VLATYNVLEAMRA 107
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
V+R+V+ S++ V G + E + K AEAL+ ++ G
Sbjct: 108 NGVKRIVFASSSTVY--GEAKVIPTPEDYPP--LPISVYGASKLAAEALISAYAHLFGFQ 163
Query: 182 TCALRPSNVFGPGDTQ-LVPLLVN--LAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
R +N+ GP T ++ +N P ++G G + YV + A + A
Sbjct: 164 AWIFRFANIVGPRSTHGVIYDFINKLKRNPN-ELEVLGDGRQRKSYLYVSDCVDAMLLAW 222
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275
E V++ F + N + I + I++E LG
Sbjct: 223 EKSTEG-VNI----FNLGNDDTISVNEIAEIVIEELG 254
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 54/248 (21%), Positives = 86/248 (34%), Gaps = 41/248 (16%)
Query: 18 GFVGRSLVLRLLELGK-----CIVRVTDSTQSLQ-LDPS-ESNSLLPDSLSSGRAEYHQV 70
GF+G+ L+ +LL C+VR D +L+ L L + R
Sbjct: 6 GFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERIIPVAG 65
Query: 71 DVR------DISQIKKVLEGASTVFYVDATDLNTDDFY-NCYMIIVQGAKNVVTACRECK 123
D+ +++ E + + AT +N + Y + V G + V+ ++ K
Sbjct: 66 DLSEPNLGLSDEDFQELAEEVDVIIHNAAT-VNFVEPYSDLRATNVLGTREVLRLAKQMK 124
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-----------KAQAEALVL 172
+ STA +G ++ K + L K AE LV
Sbjct: 125 KLPFHHVSTA--YVNGERGGLLEEKPY----KLDEDEPALLGGLPNGYTQSKWLAEQLVR 178
Query: 173 FANNIDGLLTCALRPSNVFG-------PGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225
A GL RPS + G GD L+ A G I+G + D
Sbjct: 179 EAA--GGLPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGLGVLPDILGDPDARLDLV 236
Query: 226 YVENVAHA 233
V+ VA+A
Sbjct: 237 PVDYVANA 244
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 21/171 (12%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
FDE+ CV ++ G+VG LV RLL G + +++ S
Sbjct: 2 FDESSKSVCV-MDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGL----SCEE 56
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCY---MII--VQGAKNVVT 117
R + VD D I L+G S +F + Y Y M+ V+ A NV+
Sbjct: 57 ERLKVFDVDPLDYHSILDALKGCSGLFCC----FDPPSDYPSYDEKMVDVEVRAAHNVLE 112
Query: 118 ACRECK-VRRLVYNSTADVVF---DGSHDIHNGDETLTCCWKFQDLMCDLK 164
AC + + ++V+ S+ V D + DE W Q+ K
Sbjct: 113 ACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDER---SWSDQNFCRKFK 160
|
Length = 297 |
| >gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V G +GR L RLL G +V + PDS S A++ D+
Sbjct: 5 VTGASGVLGRGLTARLLSQGHEVVGIARHR--------------PDSWPS-SADFIAADI 49
Query: 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
RD + ++ + GA V + A +D N + G NV+ A E R+V+ S+
Sbjct: 50 RDATAVESAMTGADVVAHC-AWVRGRNDHIN-----IDGTANVLKAMAETGTGRIVFTSS 103
|
Length = 854 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G VGR +V LL+ G + +VR DPS++ L D+ D
Sbjct: 9 GKVGRHVVRELLDRGYQVRALVR----------DPSQAEKLEAAGAEVVVG-----DLTD 53
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
+ LEG V + A + G N++ A ++ V+R V S+
Sbjct: 54 AESLAAALEGIDAV--ISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSS 109
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 37/136 (27%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQ----LDPSESNSLLPDSLSSGRAEYHQVDVR 73
GF+G LV L+ G VR S LD S + E D+R
Sbjct: 8 GFIGSHLVEALVRQG-YEVRAFVLYNSFNSWGWLDTSPPEVK-------DKIEVVTGDIR 59
Query: 74 DISQIKKVLEGASTVFYVDA--------------TDLNTDDFYNCYMIIVQGAKNVVTAC 119
D ++K ++G VF++ A D N V G NV+ A
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYVDTN-----------VTGTLNVLQAA 108
Query: 120 RECKVRRLVYNSTADV 135
R+ V ++V+ ST++V
Sbjct: 109 RDLGVEKVVHTSTSEV 124
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 72/367 (19%), Positives = 125/367 (34%), Gaps = 86/367 (23%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV-DVRDIS 76
GF G L L L ELG ++ LDP + +L + + D+RD++
Sbjct: 14 GFKGSWLSLWLQELGAKVI-------GYSLDPPTNPNLF-ELANLDNKISSTRGDIRDLN 65
Query: 77 QIKKVLE--GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+++ + VF++ A L + D + V G N++ A RE + V N
Sbjct: 66 ALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSVKAVVNV 125
Query: 132 TADVVFD--------------GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFA--- 174
T+D ++ G HD ++ + C +L + F
Sbjct: 126 TSDKCYENKEWGWGYRENDPLGGHDPYSSSK--GC--------AELIISSYRNSFFNPEN 175
Query: 175 NNIDGLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231
G+ + R NV G GD ++VP + + G + II + + + +V
Sbjct: 176 YGKHGIAIASARAGNVIGGGDWAEDRIVPDCIRAFEAG-ERVIIRNPNAIRPWQHVLEPL 234
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEP-----IKFWDFLSIILEGLG-YQRPFIKLPT 285
++ AE L R A A+ N P + + + + G R
Sbjct: 235 SGYLLLAEKLYERGEEYAE-AW---NFGPDDEDAVTVLELVEAMARYWGEDARW------ 284
Query: 286 GVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEE 345
L +H A DC A+ +G+ P +LEE
Sbjct: 285 -----------------DLDGNSHPHEA--------NLLKLDCSKAKTMLGWRPRWNLEE 319
Query: 346 GVSSTIQ 352
+ T+
Sbjct: 320 TLEFTVA 326
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+T +V G G +G LV ++L+ G + V D ++ + L + +
Sbjct: 3 KTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRE---LRSRFPHDKLRFI 59
Query: 69 QVDVRDISQIKKVLE--GASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECK 123
DVRD ++++ + G VF+ A D+ V G KNV+ A E
Sbjct: 60 IGDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENG 119
Query: 124 VRRLVYNST 132
V + V ST
Sbjct: 120 VEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 68 HQVDVRDISQIKKVLEGA------STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
++D+ D + +V+ + Y D + + + GA+N+ A E
Sbjct: 32 AELDITDPDAVLEVIRETRPDVVINAAAYTAV-DKAESEPELAFAVNATGAENLARAAAE 90
Query: 122 CKVRRLVYNSTADVVFDGS 140
RLV+ ST D VFDG
Sbjct: 91 VGA-RLVHIST-DYVFDGE 107
|
Length = 281 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVT--DSTQSLQLDPSESNSLLPDSLSSGRAEY 67
T V GF+G LV+RLLE G VR T D ++ LL ++ R
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPANVKKVKH-----LLDLPGATTRLTL 60
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMII---VQGAKNVVTACREC 122
+ D+ + G + VF+V AT D + D N +I V G +++ AC +
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHV-ATPMDFESKDPEN--EVIKPTVNGMLSIMKACAKA 117
Query: 123 K-VRRLVYNSTADVV 136
K VRR+V+ S+A V
Sbjct: 118 KTVRRIVFTSSAGTV 132
|
Length = 351 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENM 221
KA AE LV+ GL R +NV+GP +L+P + LA G I G G N+
Sbjct: 163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNV 222
Query: 222 SDFTYVENVAHA 233
+ Y E+VA A
Sbjct: 223 RSYLYCEDVAEA 234
|
Length = 668 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 56/212 (26%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+V G+ G S+V L+ G + +VR + S L SL + E
Sbjct: 2 LVFGATGYQGGSVVRASLKAGHPVRALVR-------------DPKSELAKSLKAAGVELV 48
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ D+ D + + L+G VF V + I G K + A +E V+ +
Sbjct: 49 EGDLDDHESLVEALKGVDVVFSVTG--------FWLSKEIEDG-KKLADAAKEAGVKHFI 99
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE-------------ALVLFAN 175
+ + V D NG E + D KA+ E F
Sbjct: 100 PSEFGNDV-----DRSNGVEPAVPHF-------DSKAEVERYIRALGIPYTFVYAGFFMG 147
Query: 176 NIDGLL--TCALRPS----NVFGPGDTQLVPL 201
N L L P + GPG+ + VPL
Sbjct: 148 NFLSNLAPPGDLAPPRDKVTLLGPGNPKAVPL 179
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 27/134 (20%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R C+ G GF+ + RL G I+ +D ++ + S + E+H
Sbjct: 23 RICITGAG-GFIASHIARRLKAEGHYII-ASDWKKNEHM----SEDMFCH-------EFH 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---------YNCYMIIVQGAKNVVTAC 119
VD+R + KV +G VF + A D+ F YN MI + N++ A
Sbjct: 70 LVDLRVMENCLKVTKGVDHVFNL-AADMGGMGFIQSNHSVIMYNNTMI----SFNMLEAA 124
Query: 120 RECKVRRLVYNSTA 133
R V+R Y S+A
Sbjct: 125 RINGVKRFFYASSA 138
|
Length = 370 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 16/170 (9%)
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q DV D+ +K+ LEG V + A D +G +N+V+A + V+RL+
Sbjct: 47 QGDVLDLEDVKEALEGQDAV--ISALGTRNDLSPTTLH--SEGTRNIVSAMKAAGVKRLI 102
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-KAQAEAL-VLFANNIDGLLTCALR 186
A GS D + F + + + A L VL + +D A+R
Sbjct: 103 VVGGA-----GSLDDRPKVTLVLDTLLFPPALRRVAEDHARMLKVLRESGLDWT---AVR 154
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
P +F G T + L I S +++ F E HV
Sbjct: 155 PPALFDGGATGGYYRVELLVDAKGGSRI--SRADLAIFMLDELETPEHVR 202
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 54/261 (20%), Positives = 90/261 (34%), Gaps = 74/261 (28%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
RG VG ++V L G N + S ++D+ D
Sbjct: 7 HRGLVGSAIVRVLARRGYE------------------NVVFRTS--------KELDLTDQ 40
Query: 76 SQIKKVLEG---------ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
++ E A+ V + A DF ++I NV+ A V++
Sbjct: 41 EAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLIND---NVIHAAHRFGVKK 97
Query: 127 LV-------YNSTADVVFDGSHDIHNG-----DETLTCCWKFQDLMCD-LKAQAEALVLF 173
LV Y A D S D+ G +E + +C+ + Q
Sbjct: 98 LVFLGSSCIYPDLAPQPIDES-DLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQY------ 150
Query: 174 ANNIDGLLTCALRPSNVFGPGD------TQLVPLLVN---LAK-PGWTKFII-GSGENMS 222
G ++ P+N++GP D + ++P L+ AK G + + GSG
Sbjct: 151 -----GCDYISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWGSGTPRR 205
Query: 223 DFTYVENVAHAHVCAAEALDS 243
+F Y +++A A V E D
Sbjct: 206 EFLYSDDLARAIVFLLENYDE 226
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 60/263 (22%), Positives = 91/263 (34%), Gaps = 62/263 (23%)
Query: 111 GAKNVVTACRECKVRRLVYNSTADV------VFDGSHDIHNGDETLTCCWKFQDLMCDLK 164
G N++ CR V+ LVY S++ V + D D ++ L K
Sbjct: 106 GFLNLLELCRHFGVKHLVYASSSSVYGLNTKMPFSEDD--RVDHPIS-------LYAATK 156
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQLVPLL-VNLAKPGWTKFIIGSGENMS 222
E + +++ G+ T LR V+GP G + L G + G
Sbjct: 157 KANELMAHTYSHLYGIPTTGLRFFTVYGPWGRPDMALFLFTKAILEGKPIDVFNDGNMSR 216
Query: 223 DFTYVENVAHAHVCA------------AEALDSRMVSVAGMAFFITNLEPIKFWDFLSII 270
DFTY++++ V A AEA D S + I N P+K DF+ +
Sbjct: 217 DFTYIDDIVEGVVRALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEAL 276
Query: 271 LEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTF-DCI 329
+ LG K L + Q T+ D
Sbjct: 277 EKALG-------------------KKAKKNYLPM-------------QKGDVPETYADIS 304
Query: 330 AAQKHIGYSPVVSLEEGVSSTIQ 352
Q+ +GY P SLEEGV ++
Sbjct: 305 KLQRLLGYKPKTSLEEGVKRFVE 327
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 27/125 (21%)
Query: 13 VLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
V G +G ++V LL +VR + ++ D E Q
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKAFAADG---------------VEVRQ 47
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D D +++ EG + + + D + +Q KN + A ++ V+ +VY
Sbjct: 48 GDYDDPETLERAFEGVDRLLLI-----SPSDLEDR----IQQHKNFIDAAKQAGVKHIVY 98
Query: 130 NSTAD 134
S +
Sbjct: 99 LSASG 103
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.96 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.96 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.95 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.95 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.92 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.91 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.88 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.88 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.88 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.87 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.87 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.86 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.86 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.86 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.85 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.84 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.84 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.84 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.83 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.83 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.83 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.82 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.82 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.82 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.82 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.81 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.81 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.8 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.8 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.79 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.79 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.79 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.77 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.77 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.77 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.77 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.77 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.76 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.76 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.75 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.75 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.75 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.75 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.75 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.75 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.74 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.74 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.74 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.74 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.73 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.73 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.72 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.72 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.72 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.72 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.71 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.71 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.71 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.71 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.71 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.7 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.7 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.7 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.7 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.69 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.69 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.69 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.68 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.68 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.68 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.68 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.67 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.67 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.66 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.65 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.65 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.64 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.63 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.63 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.63 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.62 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.62 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.62 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.61 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.61 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.61 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.6 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.6 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.6 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.6 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.58 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.58 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.58 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.57 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.56 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.56 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.55 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.55 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.54 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.54 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.54 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.53 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.52 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.51 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.51 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.5 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.5 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.5 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.49 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.48 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.48 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.47 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.47 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.46 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.44 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.43 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.4 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.39 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.35 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.34 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.34 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.34 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.34 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.31 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.27 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.27 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.25 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.23 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.22 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.21 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.2 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.17 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.15 | |
| KOG1792 | 230 | consensus Reticulon [Intracellular trafficking, se | 99.15 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.13 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.09 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.05 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.05 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.05 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.01 | |
| PLN00106 | 323 | malate dehydrogenase | 98.97 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.85 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.78 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.69 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.65 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.63 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.57 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.55 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.51 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.5 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.43 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.39 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.38 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.35 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.28 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.22 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.19 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.19 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.07 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.05 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.84 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.84 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.8 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.79 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.76 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.7 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.69 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.68 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.64 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.59 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.51 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.36 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 97.34 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.33 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.31 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.3 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.27 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.26 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.26 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.25 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.22 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.21 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.19 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.19 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.17 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.16 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.14 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.13 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.1 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.1 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.08 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.05 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.05 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.01 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.01 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.93 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.88 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.88 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.87 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.85 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.84 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.77 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.75 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.75 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.71 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.71 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.7 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.67 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.66 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.62 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.61 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.58 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.57 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.55 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.5 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.5 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.48 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.47 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.46 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.45 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.42 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.4 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.37 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.37 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.29 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.29 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.29 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.23 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.17 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.15 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.14 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.13 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.05 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.03 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.03 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.03 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.01 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.95 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.92 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.9 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 95.89 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.89 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.89 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.86 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.84 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.82 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.81 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 95.74 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.71 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.71 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.7 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 95.64 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.62 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.6 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.6 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.59 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.58 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 95.56 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.54 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.54 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.44 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.35 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.33 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.27 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 95.24 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.2 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 95.12 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.12 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.11 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.08 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.04 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.0 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.99 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 94.92 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.89 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.89 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.82 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 94.81 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.8 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 94.77 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 94.73 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 94.7 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 94.62 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 94.62 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 94.58 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.58 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 94.54 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 94.53 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.53 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.53 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.5 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.49 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.49 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.45 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.4 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.39 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 94.36 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.34 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.34 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 94.2 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.18 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.18 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 94.15 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.14 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 94.06 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 93.99 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.94 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 93.88 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 93.83 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 93.83 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 93.77 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 93.75 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.69 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 93.69 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.69 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 93.63 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.62 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 93.61 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.58 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 93.55 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 93.54 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 93.54 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 93.51 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.49 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.44 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.39 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.32 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.32 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 93.27 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.24 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 93.23 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.11 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 93.08 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 93.03 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.89 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 92.88 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 92.81 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 92.79 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 92.79 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 92.78 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 92.78 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 92.76 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.75 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 92.74 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.64 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 92.58 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 92.57 |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=369.10 Aligned_cols=316 Identities=22% Similarity=0.211 Sum_probs=267.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
|++|||||.||||++++++++++.. ++|+++|.-...... ..+......++..++++|+.|.+.+..+++ .+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~-----~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~ 75 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNL-----ENLADVEDSPRYRFVQGDICDRELVDRLFKEYQP 75 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCH-----HHHHhhhcCCCceEEeccccCHHHHHHHHHhcCC
Confidence 6899999999999999999999875 358888875431110 123444556899999999999999999998 58
Q ss_pred CEEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 86 STVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 86 D~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
|+|+|+|| ++.+..+|+...++|+.||.+||||+++...+ ||+++||..|||+-.......+|++ |.+|.++|+
T Consensus 76 D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~t--p~~PsSPYS 153 (340)
T COG1088 76 DAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETT--PYNPSSPYS 153 (340)
T ss_pred CeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCC--CCCCCCCcc
Confidence 99999999 77888999999999999999999999999754 9999999999987666555788998 569999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
+||+.++.+++++..++|++++|.|+++-|||.+. .++|.++..+..|+++++.|+|.+.|||+||+|-|+|+...++
T Consensus 154 ASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 154 ASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999875 5999999999999999999999999999999999999999998
Q ss_pred HhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 012270 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (467)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (467)
.+..|++|||+++...+-.|+++.|++.+|+..+.. ..+ .... . +-|.-
T Consensus 234 ------kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~---~~l-------i~~V---~-----DRpGH------- 282 (340)
T COG1088 234 ------KGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDY---RDL-------ITFV---E-----DRPGH------- 282 (340)
T ss_pred ------cCcCCceEEeCCCccchHHHHHHHHHHHhCccccch---hhh-------eEec---c-----CCCCC-------
Confidence 566799999999999999999999999999886520 000 0000 0 11100
Q ss_pred hccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhcccc
Q 012270 320 ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSL 363 (467)
Q Consensus 320 ~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~~~~ 363 (467)
...+.+|.+|++++|||+|++++++||++|++||.++.....+
T Consensus 283 -D~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv~WY~~N~~Ww~~ 325 (340)
T COG1088 283 -DRRYAIDASKIKRELGWRPQETFETGLRKTVDWYLDNEWWWEP 325 (340)
T ss_pred -ccceeechHHHhhhcCCCcCCCHHHHHHHHHHHHHhchHHHhh
Confidence 1235689999999999999999999999999999997655433
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=387.42 Aligned_cols=345 Identities=40% Similarity=0.586 Sum_probs=311.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcC-CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+++.+++||||+||+|+||+++|++++ ..+|+++|..+.......+.. ...+..++++.+|++|..++.+++++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-----~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-----GFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-----cccCCceeEEecchhhhhhhhhhccC
Confidence 357899999999999999999999998 359999999886333333220 01367899999999999999999999
Q ss_pred CCEEEEcccC---CCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa~---~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+ .|+|+|+. ....++++.++++|+.||.|++++|++.|++++||+||.+|++++.. ....+|+.|+|.++.++|+
T Consensus 77 ~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~-~~n~~E~~p~p~~~~d~Y~ 154 (361)
T KOG1430|consen 77 A-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEP-IINGDESLPYPLKHIDPYG 154 (361)
T ss_pred c-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCee-cccCCCCCCCccccccccc
Confidence 9 88888882 22345689999999999999999999999999999999999987765 6788999999988889999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHh
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~ 241 (467)
.||+.+|++++++++..++.+++|||+.||||++...++.++..+..|+.+...|+++.+.|+++++++|.++++|.+++
T Consensus 155 ~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL 234 (361)
T KOG1430|consen 155 ESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARAL 234 (361)
T ss_pred hHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHH
Confidence 99999999999999878899999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC-CccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHh
Q 012270 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLA 320 (467)
Q Consensus 242 ~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (467)
....+..+|+.|+|++++++..++++..+.+.+|++.+ .+.+|.++..+++.+.++.+..++| ..|.+++.++..+
T Consensus 235 ~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p---~~p~lt~~~v~~~ 311 (361)
T KOG1430|consen 235 LDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRP---YQPILTRFRVALL 311 (361)
T ss_pred HhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccC---CCCCcChhheeee
Confidence 86678899999999999999999999999999999998 8899999999999999999999987 6788999999988
Q ss_pred ccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 321 SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 321 ~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
..+.++|+.|++++|||.|..+++|++.+++.|+......
T Consensus 312 ~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 312 GVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred ccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 8899999999999999999999999999999998876543
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=369.79 Aligned_cols=299 Identities=21% Similarity=0.229 Sum_probs=252.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+||||||+||||+|.+.+|++.| ++|+++|.-..... ........+++++|++|.+.|.+.|+ ++|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g~~----------~~v~~~~~~f~~gDi~D~~~L~~vf~~~~id 69 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGHK----------IALLKLQFKFYEGDLLDRALLTAVFEENKID 69 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCCH----------HHhhhccCceEEeccccHHHHHHHHHhcCCC
Confidence 689999999999999999999999 59999998665211 11111126899999999999999997 499
Q ss_pred EEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|| +..+-.+|..+|+.|+.||.+|+++|+++||++|||.||++|||. +...|++|+. |..|.++||+|
T Consensus 70 aViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~--p~~~PI~E~~--~~~p~NPYG~s 145 (329)
T COG1087 70 AVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE--PTTSPISETS--PLAPINPYGRS 145 (329)
T ss_pred EEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCC--CCCcccCCCC--CCCCCCcchhH
Confidence 9999999 556789999999999999999999999999999999999999954 4457999999 55799999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----------CcHHHHHHHhcCCCc-eEEec------CCCcccccc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAKPGWT-KFIIG------SGENMSDFT 225 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-----------~~~~~~~~~~~~g~~-~~~~g------~g~~~~~~i 225 (467)
|.+.|++++.+++.+++++++||-.++.|.... .++|...+.+...++ +.++| ||...||||
T Consensus 146 Klm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYI 225 (329)
T COG1087 146 KLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYI 225 (329)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeee
Confidence 999999999999999999999999999997543 266777766654444 67777 567889999
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhccc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~ 305 (467)
||.|+|.|++.|++.+.. +....+||++++...|+.|+++++.++.|.+.+....|+.
T Consensus 226 HV~DLA~aH~~Al~~L~~---~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR------------------- 283 (329)
T COG1087 226 HVDDLADAHVLALKYLKE---GGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRR------------------- 283 (329)
T ss_pred ehhHHHHHHHHHHHHHHh---CCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCC-------------------
Confidence 999999999999998742 2233699999999999999999999999988665444432
Q ss_pred ccCCCCchHHHHHHhccceEeehhhHhhhCCCcccc-ChHHHHHHHHHHHHH
Q 012270 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSH 356 (467)
Q Consensus 306 ~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~i~~~i~~~~~ 356 (467)
..+++ ....|++|++++|||+|++ ++++.+++.+.|.+.
T Consensus 284 ~GDpa------------~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 284 AGDPA------------ILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred CCCCc------------eeEeCHHHHHHHhCCCcccCCHHHHHHHHHHHhhh
Confidence 11332 3667999999999999999 999999999999985
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=381.13 Aligned_cols=316 Identities=18% Similarity=0.167 Sum_probs=246.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCC--CcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.+|+|||||||||||++|+++|+++| ++|++++|........... ... ......+++++.+|++|.+++.+++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDD--VRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhh--hhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 56899999999999999999999999 5999999865311100000 000 001124688999999999999999999
Q ss_pred CCEEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|+|||+|+.. .+..++...+++|+.||.|++++|++.+++||||+||++|||..+ ..+.+|+. +..|.++|+
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~e~~--~~~p~~~Y~ 166 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHP--DLPKIEER--IGRPLSPYA 166 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCC--CCCCCCCC--CCCCCChhh
Confidence 99999999943 344567788999999999999999999999999999999997433 23455655 446788999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~ 235 (467)
.+|..+|++++.+.+.++++++++||+++|||+++ .+++.++..+..|+++.++|+|++.+||+||+|+|++++
T Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~ 246 (348)
T PRK15181 167 VTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANL 246 (348)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHH
Confidence 99999999999988778999999999999999753 357888888888888888999999999999999999999
Q ss_pred HHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 236 ~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
.++..- .....+++|||++++++|+.|+++.+.+.++........... ...+..+.
T Consensus 247 ~~~~~~---~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 302 (348)
T PRK15181 247 LSATTN---DLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEP---------------------IYKDFRDG 302 (348)
T ss_pred HHHhcc---cccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCc---------------------ccCCCCCC
Confidence 877620 012356899999999999999999999998743211000000 00001111
Q ss_pred HHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
. .....+|.+|++++|||+|+++++|+++++++|++.+
T Consensus 303 ~----~~~~~~d~~k~~~~lGw~P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 303 D----VKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred c----ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 1 1134679999999999999999999999999999875
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=352.62 Aligned_cols=265 Identities=45% Similarity=0.666 Sum_probs=228.0
Q ss_pred EEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEEEE
Q 012270 12 VVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (467)
Q Consensus 12 lVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 90 (467)
|||||+||||++|+++|+++|+ ++|+++++.+.... .......+..+++.+|++|++++.++++++|+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--------~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--------LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--------chhhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 6999999999999999999994 48999998775211 11111223344999999999999999999999999
Q ss_pred cccCCCC--CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccC--CCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 91 VDATDLN--TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDG--SHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 91 ~aa~~~~--~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~--~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+|++... ..+++.++++|+.||+||+++|++.+|+|+||+||.+|+++. ..+....||+.|++..+.+.|+.||++
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~ 152 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKAL 152 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHH
Confidence 9995433 356788999999999999999999999999999999999862 233445789998888899999999999
Q ss_pred HHHHHHhhcC---CC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHh
Q 012270 167 AEALVLFANN---ID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (467)
Q Consensus 167 ~E~~v~~~~~---~~--g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~ 241 (467)
+|++++++.. +. .+.+++|||+.||||++..+.+.+...+..|......|+++...+++||+|+|+|+++|.+++
T Consensus 153 AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L 232 (280)
T PF01073_consen 153 AEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQAL 232 (280)
T ss_pred HHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHh
Confidence 9999999876 23 499999999999999999888888888888877788999999999999999999999999988
Q ss_pred ccc--cccCCCcEEEEcCCCCcC-HHHHHHHHHHHcCCCCCC-ccCC
Q 012270 242 DSR--MVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQRPF-IKLP 284 (467)
Q Consensus 242 ~~~--~~~~~g~~yni~~~~~~s-~~el~~~i~~~~g~~~~~-~~ip 284 (467)
.+. .....|++|+|+++++++ ++||+..+.+.+|.+.+. +.+|
T Consensus 233 ~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~~~~lp 279 (280)
T PF01073_consen 233 LEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPKSISLP 279 (280)
T ss_pred ccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCcccCCC
Confidence 765 567889999999999999 999999999999999876 6665
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=354.58 Aligned_cols=314 Identities=16% Similarity=0.178 Sum_probs=241.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCC-CHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~~~ 85 (467)
||+|||||||||||++|+++|+++ | ++|++++|+... .......++++++.+|++ +.+.+.++++++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~~~----------~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 69 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQTDR----------LGDLVNHPRMHFFEGDITINKEWIEYHVKKC 69 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcHHH----------HHHhccCCCeEEEeCCCCCCHHHHHHHHcCC
Confidence 578999999999999999999987 6 599999986531 111112346899999998 778888889999
Q ss_pred CEEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc-c---C-CCCC
Q 012270 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT-C---C-WKFQ 157 (467)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p-~---~-~~~~ 157 (467)
|+|||+|+.. ....++...+++|+.++.+++++|++.+ +|+||+||+++||.... .+.+|+.+ . + .+|.
T Consensus 70 d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~--~~~~ee~~~~~~~~~~~p~ 146 (347)
T PRK11908 70 DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPD--EEFDPEASPLVYGPINKPR 146 (347)
T ss_pred CEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCC--cCcCccccccccCcCCCcc
Confidence 9999999842 2356788899999999999999999988 79999999999975432 24555432 1 1 2466
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 158 ~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+.|+.+|..+|++++.++.+++++++++||+++|||+.. .+++.++..+..|+++.+.++|++.++|||+
T Consensus 147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v 226 (347)
T PRK11908 147 WIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDI 226 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccH
Confidence 789999999999999998778999999999999999742 3567788888888888888889999999999
Q ss_pred hHHHHHHHHHHHHhcccccc--CCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcc
Q 012270 228 ENVAHAHVCAAEALDSRMVS--VAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~--~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 304 (467)
+|+|++++.++++ +. ..|++||++++ ..+|+.|+++.+.+.+|..+.....+.++ . ..
T Consensus 227 ~D~a~a~~~~~~~-----~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-~-----------~~-- 287 (347)
T PRK11908 227 DDGIDALMKIIEN-----KDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKV-K-----------LV-- 287 (347)
T ss_pred HHHHHHHHHHHhC-----ccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCccccccccccc-c-----------cc--
Confidence 9999999999883 32 45789999997 57999999999999998653321111000 0 00
Q ss_pred cccCCCC---chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 305 RTYNHSL---SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 305 ~~~~~p~---~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
..+. ..+... ....+..|++|++++|||+|+++++|+++++++|+++...
T Consensus 288 ---~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~ 340 (347)
T PRK11908 288 ---ETTSGAYYGKGYQ--DVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVA 340 (347)
T ss_pred ---cCCchhccCcCcc--hhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 0000 000000 0112446899999999999999999999999999987654
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=359.29 Aligned_cols=318 Identities=18% Similarity=0.165 Sum_probs=238.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++|+|||||||||||++|+++|+++|.++|++++|......... . .......++++++.+|++|.+.+.++++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~-~---~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL-E---PDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh-c---cccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 456899999999999999999999984259999998654110000 0 000011247999999999999999999999
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc----------
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC---------- 152 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~---------- 152 (467)
|+|||+|+... ...++...+..|+.++.+++++|++.+ +||||+||.++||.... ...+|+.|.
T Consensus 88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~--~~~~e~~p~~~~~~~~~~~ 164 (386)
T PLN02427 88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIG--SFLPKDHPLRQDPAFYVLK 164 (386)
T ss_pred CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcC--CCCCccccccccccccccc
Confidence 99999999432 334566677899999999999999887 89999999999975321 122222211
Q ss_pred ----------CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-------------CcHHHHHHHhcCC
Q 012270 153 ----------CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------------QLVPLLVNLAKPG 209 (467)
Q Consensus 153 ----------~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-------------~~~~~~~~~~~~g 209 (467)
...|.+.|+.+|..+|++++.+++.+|++++++||+++|||+.. .+++.+...+..+
T Consensus 165 e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 244 (386)
T PLN02427 165 EDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRR 244 (386)
T ss_pred ccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcC
Confidence 01345689999999999999988878999999999999999742 1344556677788
Q ss_pred CceEEecCCCccccccchhHHHHHHHHHHHHhccccc-cCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCC-------
Q 012270 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV-SVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPF------- 280 (467)
Q Consensus 210 ~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~-~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~------- 280 (467)
+++.+++++++.++||||+|+|++++.++++ + ...|++||++++ +++|+.|+++.+.+.+|.....
T Consensus 245 ~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~-----~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~ 319 (386)
T PLN02427 245 EPLKLVDGGQSQRTFVYIKDAIEAVLLMIEN-----PARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPT 319 (386)
T ss_pred CCeEEECCCCceECcEeHHHHHHHHHHHHhC-----cccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccc
Confidence 8888899999999999999999999999972 3 245779999997 6999999999999999852110
Q ss_pred ccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 281 IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 281 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
+.+|.. +...+.. .-...+..|.+|++++|||+|+++++++|+++++|++.....
T Consensus 320 ~~~~~~-----------------------~~~~~~~--~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 320 VDVSSK-----------------------EFYGEGY--DDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred cccCcc-----------------------cccCccc--cchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 111110 0000000 001134569999999999999999999999999999887654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=355.28 Aligned_cols=320 Identities=23% Similarity=0.230 Sum_probs=244.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--C
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~ 85 (467)
||+|||||||||||+++++.|+++|+..|.+++|...... . .. +.......+++++.+|++|.+++.+++++ +
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 75 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN-L-MS---LAPVAQSERFAFEKVDICDRAELARVFTEHQP 75 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccc-h-hh---hhhcccCCceEEEECCCcChHHHHHHHhhcCC
Confidence 5799999999999999999999999533555565432100 0 00 11111123678899999999999999984 8
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhC---------CCCeEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC---------KVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~---------~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
|+|||+||... +..++..++++|+.|+.+++++|++. +++++||+||.++||.......+.+|+. +
T Consensus 76 D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~--~ 153 (355)
T PRK10217 76 DCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETT--P 153 (355)
T ss_pred CEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCC--C
Confidence 99999999432 33467889999999999999999862 5789999999999975443344678877 4
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHH
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva 231 (467)
..|.+.|+.||..+|++++.++++.+++++++||+++|||++. .+++.++..+..++++.+++++++.++|+||+|+|
T Consensus 154 ~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a 233 (355)
T PRK10217 154 YAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHA 233 (355)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHH
Confidence 4678899999999999999998878999999999999999873 46777877788888878889999999999999999
Q ss_pred HHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 012270 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (467)
Q Consensus 232 ~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (467)
++++.+++ . ...+++||+++++++|++|+++.+.+.+|...+...++.... ...+. ... ..|.
T Consensus 234 ~a~~~~~~-----~-~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~-~~~----~~~~ 296 (355)
T PRK10217 234 RALYCVAT-----T-GKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHY------RDLIT-FVA----DRPG 296 (355)
T ss_pred HHHHHHHh-----c-CCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccc------cccce-ecC----CCCC
Confidence 99999987 2 345679999999999999999999999986433222111100 00000 000 0010
Q ss_pred chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
. ...+.+|++|++++|||+|+++++|+++++++|++.+..
T Consensus 297 ~--------~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 297 H--------DLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred C--------CcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 0 112467999999999999999999999999999988643
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=358.98 Aligned_cols=302 Identities=21% Similarity=0.213 Sum_probs=240.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
..|+|||||||||||++|+++|+++| ++|++++|...... .. .......++++++.+|+.+.. +.++|
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~~~~---~~---~~~~~~~~~~~~~~~Di~~~~-----~~~~D 186 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFTGRK---EN---LVHLFGNPRFELIRHDVVEPI-----LLEVD 186 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCccH---hH---hhhhccCCceEEEECcccccc-----ccCCC
Confidence 56899999999999999999999999 59999998643100 00 111112346888999997753 46899
Q ss_pred EEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc---cCCCCCChH
Q 012270 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLM 160 (467)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p---~~~~~~~~Y 160 (467)
+|||+|+.. ....++...+++|+.|+.+++++|++.++ |+||+||.+|||+.. ..+.+|+.+ .|..|.+.|
T Consensus 187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~--~~p~~E~~~~~~~p~~p~s~Y 263 (436)
T PLN02166 187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL--EHPQKETYWGNVNPIGERSCY 263 (436)
T ss_pred EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCC--CCCCCccccccCCCCCCCCch
Confidence 999999843 23457888999999999999999999986 899999999997532 235667632 144567889
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
+.+|..+|++++.+++..+++++++||+++|||++. .+++.++..+..++++.++|++++.++|+||+|+|++++.
T Consensus 264 g~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~ 343 (436)
T PLN02166 264 DEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVA 343 (436)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHH
Confidence 999999999999998878999999999999999853 4677888888888888899999999999999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
+++. . .+++||+++++.+|+.|+++.+.+.+|.+......|.. + ..
T Consensus 344 ~~~~------~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~-----------------------~----~~ 389 (436)
T PLN02166 344 LMEG------E-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNT-----------------------A----DD 389 (436)
T ss_pred HHhc------C-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCC-----------------------C----CC
Confidence 8872 2 24599999999999999999999999876433222210 0 00
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhcc
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~~ 361 (467)
.....+|++|++++|||+|+++++++++++++|++......
T Consensus 390 ----~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~~~~~~ 430 (436)
T PLN02166 390 ----PHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNE 430 (436)
T ss_pred ----ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhcCc
Confidence 12346799999999999999999999999999998866543
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=350.18 Aligned_cols=304 Identities=18% Similarity=0.160 Sum_probs=241.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+..|+|||||||||||+++++.|+++| ++|++++|..... ... .....+++.+|++|.+.+.++++++
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~~~~---------~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~ 86 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKKNEH---------MSE--DMFCHEFHLVDLRVMENCLKVTKGV 86 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEeccccc---------ccc--ccccceEEECCCCCHHHHHHHHhCC
Confidence 356899999999999999999999999 5999999864310 000 0123578889999999999999999
Q ss_pred CEEEEcccCCC----CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCC--CCCCCCCcccCCCCCCh
Q 012270 86 STVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHD--IHNGDETLTCCWKFQDL 159 (467)
Q Consensus 86 D~Vih~aa~~~----~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~--~~~~~E~~p~~~~~~~~ 159 (467)
|+|||+|+... ...++....+.|+.++.|++++|++.++++|||+||..+|+..... ..+.+|+.+.+..|.+.
T Consensus 87 D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~ 166 (370)
T PLN02695 87 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA 166 (370)
T ss_pred CEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCH
Confidence 99999998432 2234556678999999999999999999999999999999754321 12466665446678899
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcC-CCceEEecCCCccccccchhHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKP-GWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~-g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
|+.+|..+|++++.++.+.|++++++||+++|||+.. ...+.++..+.. +.++.+++++++.++|+|++|+++
T Consensus 167 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ 246 (370)
T PLN02695 167 YGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVE 246 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHH
Confidence 9999999999999988878999999999999999753 134566665544 467788899999999999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
+++.+++ .. .+++||+++++++|+.|+++.+.+..|.+.+...+|.. ...
T Consensus 247 ai~~~~~------~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~-----------------------~~~ 296 (370)
T PLN02695 247 GVLRLTK------SD-FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGP-----------------------EGV 296 (370)
T ss_pred HHHHHHh------cc-CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCC-----------------------CCc
Confidence 9998876 22 35699999999999999999999999876544333211 000
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
.....|++|++++|||+|+++++++|+++++|+++....
T Consensus 297 ---------~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~~~~~~ 335 (370)
T PLN02695 297 ---------RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEK 335 (370)
T ss_pred ---------cccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 013479999999999999999999999999999886543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=354.77 Aligned_cols=300 Identities=21% Similarity=0.210 Sum_probs=238.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
..|+|||||||||||++|+++|+++| ++|++++|..... .+. .......++++++.+|+.++. +.++|
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~~~---~~~---~~~~~~~~~~~~i~~D~~~~~-----l~~~D 185 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFTGR---KEN---VMHHFSNPNFELIRHDVVEPI-----LLEVD 185 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCccc---hhh---hhhhccCCceEEEECCccChh-----hcCCC
Confidence 45899999999999999999999999 5999998753210 000 111123457889999998753 45799
Q ss_pred EEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc---cCCCCCChH
Q 012270 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLM 160 (467)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p---~~~~~~~~Y 160 (467)
+|||+|+.. ....++...+++|+.++.|++++|++.++ |+||+||..|||+.. ..+.+|+.+ .|..+.+.|
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~--~~p~~E~~~~~~~P~~~~s~Y 262 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL--QHPQVETYWGNVNPIGVRSCY 262 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCC--CCCCCccccccCCCCCccchH
Confidence 999999843 23457888999999999999999999996 899999999996432 235566542 134557889
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC----CCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~----~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
+.+|..+|++++.+++.++++++++||+++|||+. ..+++.++..+..++++.++|++++.++|+||+|+|++++.
T Consensus 263 ~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~ 342 (442)
T PLN02206 263 DEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 342 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHH
Confidence 99999999999998877899999999999999973 24567788888888888899999999999999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
+++. + .+++||+++++++|+.|+++.+.+.+|.+......|... ..
T Consensus 343 a~e~-----~--~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~--------------------~~------- 388 (442)
T PLN02206 343 LMEG-----E--HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTE--------------------DD------- 388 (442)
T ss_pred HHhc-----C--CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCC--------------------CC-------
Confidence 9872 2 245999999999999999999999998654322222100 00
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.....+|++|+++++||+|+++++|+|+++++|+++...
T Consensus 389 ----~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~~~~ 427 (442)
T PLN02206 389 ----PHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQRVF 427 (442)
T ss_pred ----ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 012457999999999999999999999999999987653
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=354.69 Aligned_cols=317 Identities=16% Similarity=0.141 Sum_probs=236.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC---CcCCCC-------CCC--cCCCCCeEEEEecCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP---SESNSL-------LPD--SLSSGRAEYHQVDVR 73 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~---~~~~~~-------~~~--~~~~~~v~~~~~Dl~ 73 (467)
.++|+||||||+||||++|+++|+++| ++|+++||........ ...... +.. .....+++++.+|++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~ 123 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC 123 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence 467899999999999999999999999 5999998643211000 000000 000 001236889999999
Q ss_pred CHHHHHHHHh--CCCEEEEcccCCC---CCC---ChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCccccccCCCCC-
Q 012270 74 DISQIKKVLE--GASTVFYVDATDL---NTD---DFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDI- 143 (467)
Q Consensus 74 d~~~l~~~~~--~~D~Vih~aa~~~---~~~---~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~~vyg~~~~~~- 143 (467)
|.+++.++++ ++|+|||+|+... +.. ++...+++|+.|+.+++++|++.+++ ||||+||.+|||....+.
T Consensus 124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~~ 203 (442)
T PLN02572 124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDIE 203 (442)
T ss_pred CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCCc
Confidence 9999999998 4899999997422 122 23456789999999999999999986 999999999997532110
Q ss_pred -CCCC------CCc-ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-------------------
Q 012270 144 -HNGD------ETL-TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------------------- 196 (467)
Q Consensus 144 -~~~~------E~~-p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------------------- 196 (467)
.+++ |++ +.+..|.++|+.+|.++|.+++.+++.+|++++++||+++|||++.
T Consensus 204 E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~ 283 (442)
T PLN02572 204 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFG 283 (442)
T ss_pred ccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccchh
Confidence 0111 222 2356788899999999999999999888999999999999999753
Q ss_pred CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCC--cEEEEcCCCCcCHHHHHHHHHHH-
Q 012270 197 QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAG--MAFFITNLEPIKFWDFLSIILEG- 273 (467)
Q Consensus 197 ~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g--~~yni~~~~~~s~~el~~~i~~~- 273 (467)
..++.++..+..|+++.++|+|++.+||+||+|+|++++.++++ ....| ++||+++ +.+|+.|+++.+.+.
T Consensus 284 ~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~-----~~~~g~~~i~Nigs-~~~si~el~~~i~~~~ 357 (442)
T PLN02572 284 TALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIAN-----PAKPGEFRVFNQFT-EQFSVNELAKLVTKAG 357 (442)
T ss_pred hHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhC-----hhhcCceeEEEeCC-CceeHHHHHHHHHHHH
Confidence 23456667777888888899999999999999999999999872 22233 5899987 789999999999999
Q ss_pred --cCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCcccc---ChHHHHH
Q 012270 274 --LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV---SLEEGVS 348 (467)
Q Consensus 274 --~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~---~l~e~i~ 348 (467)
+|.+.+....|.. . .. ........|.+|+++ |||+|++ +++|++.
T Consensus 358 ~~~g~~~~~~~~p~~------------------------~-~~----~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l~ 407 (442)
T PLN02572 358 EKLGLDVEVISVPNP------------------------R-VE----AEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSLL 407 (442)
T ss_pred HhhCCCCCeeeCCCC------------------------c-cc----ccccccCccHHHHHH-cCCCCCCcHHHHHHHHH
Confidence 8866443223211 0 00 001124468999986 9999998 8999999
Q ss_pred HHHHHHHHhhh
Q 012270 349 STIQSFSHLAR 359 (467)
Q Consensus 349 ~~i~~~~~~~~ 359 (467)
++++||+++..
T Consensus 408 ~~~~~~~~~~~ 418 (442)
T PLN02572 408 NFAVKYKDRVD 418 (442)
T ss_pred HHHHHHHhhcc
Confidence 99999986543
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=372.86 Aligned_cols=320 Identities=17% Similarity=0.152 Sum_probs=246.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHH-HHHHHh
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~ 83 (467)
..+|+|||||||||||++|+++|+++ | ++|++++|.+... ......++++++.+|++|.++ +.++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~~~~----------~~~~~~~~~~~~~gDl~d~~~~l~~~l~ 381 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGSDAI----------SRFLGHPRFHFVEGDISIHSEWIEYHIK 381 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCchhh----------hhhcCCCceEEEeccccCcHHHHHHHhc
Confidence 35789999999999999999999986 6 5999999866411 111123468999999998655 577889
Q ss_pred CCCEEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc----CC-C
Q 012270 84 GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----CW-K 155 (467)
Q Consensus 84 ~~D~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~----~~-~ 155 (467)
++|+|||+||.. ....++...+++|+.++.+++++|++.+ +||||+||.++||.. ...+.+|+.+. +. .
T Consensus 382 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~--~~~~~~E~~~~~~~~p~~~ 458 (660)
T PRK08125 382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMC--TDKYFDEDTSNLIVGPINK 458 (660)
T ss_pred CCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCC--CCCCcCccccccccCCCCC
Confidence 999999999843 2445677889999999999999999998 899999999999753 22367887643 22 3
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 156 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
|.+.|+.+|..+|++++.+++.+|++++++||+++|||++. ..++.++..+..++++.++|++++.++|+
T Consensus 459 p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i 538 (660)
T PRK08125 459 QRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFT 538 (660)
T ss_pred CccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeecee
Confidence 56789999999999999998878999999999999999753 35778888888888888889999999999
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC-CcCHHHHHHHHHHHcCCCCCCccCChHH-HHHHHHHHHHHHHHhc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGV-VWYIILLVKWIHEKLG 303 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~ip~~~-~~~~~~~~~~~~~~~~ 303 (467)
|++|+|++++.++++. .....|++||+++++ .+|+.|+++.+.+.+|.+...+.+|... .+..
T Consensus 539 ~v~Dva~a~~~~l~~~---~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~------------ 603 (660)
T PRK08125 539 DIRDGIEALFRIIENK---DNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVV------------ 603 (660)
T ss_pred eHHHHHHHHHHHHhcc---ccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccc------------
Confidence 9999999999998831 012357899999985 7999999999999999654333343221 0000
Q ss_pred ccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 304 ~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
....+..... ........|++|++++|||+|+++++|+|+++++|+++...
T Consensus 604 ----~~~~~~~~~~-~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~ 654 (660)
T PRK08125 604 ----ESSSYYGKGY-QDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_pred ----cccccccccc-ccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccc
Confidence 0000000000 00012346999999999999999999999999999987654
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=315.94 Aligned_cols=313 Identities=23% Similarity=0.248 Sum_probs=255.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..++++||||.||||++.+..+...-. +..+.+|.-..-.. ...+.+....++..++.+|+.|...+...+.
T Consensus 5 ~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~-----~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~ 79 (331)
T KOG0747|consen 5 KEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN-----LKNLEPVRNSPNYKFVEGDIADADLVLYLFETE 79 (331)
T ss_pred ccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc-----cchhhhhccCCCceEeeccccchHHHHhhhccC
Confidence 348999999999999999999998743 34555554221000 1124455567899999999999988887775
Q ss_pred CCCEEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 84 GASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 84 ~~D~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
..|.|+|+|+ .+.+..++......|+.++..|+++++.. ++++|||+||..|||+.+....+. |.+ .++|.++
T Consensus 80 ~id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~-E~s--~~nPtnp 156 (331)
T KOG0747|consen 80 EIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVG-EAS--LLNPTNP 156 (331)
T ss_pred chhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccc-ccc--cCCCCCc
Confidence 5899999999 45577788889999999999999999999 699999999999998765543222 666 6799999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
|+.+|+++|+.+++|..++|++++++|-++||||++. ..++.|+..+..+++..+.|+|.+.++|+||+|+++++..+
T Consensus 157 yAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v 236 (331)
T KOG0747|consen 157 YAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAV 236 (331)
T ss_pred hHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 48899999888999999999999999999999999999999
Q ss_pred HHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 012270 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 317 (467)
++ .+..|++|||+++.+.+..|+++.+.+..++..+....+++. .+-+++.
T Consensus 237 ~~------Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~-----------------------~~v~dRp 287 (331)
T KOG0747|consen 237 LE------KGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFI-----------------------FFVEDRP 287 (331)
T ss_pred Hh------cCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcc-----------------------eecCCCC
Confidence 98 466799999999999999999999999988754433322221 1111111
Q ss_pred HHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 318 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.....+.+|.+|+++ |||+|++|+++|++.+++||.++.
T Consensus 288 -~nd~Ry~~~~eKik~-LGw~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 288 -YNDLRYFLDDEKIKK-LGWRPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred -cccccccccHHHHHh-cCCcccCcHHHHHHHHHHHHHhhh
Confidence 111235679999995 999999999999999999998865
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=311.89 Aligned_cols=303 Identities=21% Similarity=0.237 Sum_probs=250.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+.++|+||||.||||+|||+.|..+|| +|.++|.-... .. ..+......+.++.+.-|+..+ ++.++
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh-~VIa~Dn~ftg---~k---~n~~~~~~~~~fel~~hdv~~p-----l~~ev 92 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH-EVIALDNYFTG---RK---ENLEHWIGHPNFELIRHDVVEP-----LLKEV 92 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC-eEEEEeccccc---ch---hhcchhccCcceeEEEeechhH-----HHHHh
Confidence 4568999999999999999999999995 99999975441 11 1133444567788888888665 67789
Q ss_pred CEEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc---cCCCCCCh
Q 012270 86 STVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDL 159 (467)
Q Consensus 86 D~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p---~~~~~~~~ 159 (467)
|.|+|+|+ +.....+|..++..|+.|+.|++-.|++.+ +||++.||+.|||+ +...|..|+-+ .|..|.+.
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgd--p~~hpq~e~ywg~vnpigpr~c 169 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGD--PLVHPQVETYWGNVNPIGPRSC 169 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCC--cccCCCccccccccCcCCchhh
Confidence 99999999 445678889999999999999999999998 69999999999976 33445555543 26778889
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~ 235 (467)
|...|..+|.++..|+++.|+.+.|.|+.+.|||+.. ..+..++.++.++.++.++|+|.+.++|.||+|++++++
T Consensus 170 ydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll 249 (350)
T KOG1429|consen 170 YDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLL 249 (350)
T ss_pred hhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHH
Confidence 9999999999999999999999999999999999754 467888999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 236 ~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
.+++ .+..+ .+||++++.+|+.|+++++.+..+........++ +.+.|
T Consensus 250 ~Lm~------s~~~~-pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~--------------------~~Ddp----- 297 (350)
T KOG1429|consen 250 RLME------SDYRG-PVNIGNPGEFTMLELAEMVKELIGPVSEIEFVEN--------------------GPDDP----- 297 (350)
T ss_pred HHhc------CCCcC-CcccCCccceeHHHHHHHHHHHcCCCcceeecCC--------------------CCCCc-----
Confidence 9998 33444 6999999999999999999999865543322211 11222
Q ss_pred HHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhcc
Q 012270 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~~ 361 (467)
+.+.-|++++++.|||.|+++|+|++..|+.|+++.....
T Consensus 298 ------~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~i~~~ 337 (350)
T KOG1429|consen 298 ------RKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRERIARE 337 (350)
T ss_pred ------cccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHHHHHH
Confidence 2456799999999999999999999999999999977553
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=329.98 Aligned_cols=321 Identities=24% Similarity=0.274 Sum_probs=258.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|+||||+||||+++++.|+++| ++|++++|++... ......+++++.+|+.|.+++.++++++|+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~v 68 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDR-----------RNLEGLDVEIVEGDLRDPASLRKAVAGCRAL 68 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEecCccc-----------cccccCCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 589999999999999999999999 5999999976521 1112236889999999999999999999999
Q ss_pred EEcccCC-CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCC-CCCChHHHHHHH
Q 012270 89 FYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCW-KFQDLMCDLKAQ 166 (467)
Q Consensus 89 ih~aa~~-~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~-~~~~~Y~~sK~~ 166 (467)
||+|+.. ....++...+++|+.++.+++++|++.+++|+||+||.++|+... ...+.+|+.+..+ .+.+.|+.+|..
T Consensus 69 i~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-~~~~~~e~~~~~~~~~~~~Y~~sK~~ 147 (328)
T TIGR03466 69 FHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRG-DGTPADETTPSSLDDMIGHYKRSKFL 147 (328)
T ss_pred EEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCC-CCCCcCccCCCCcccccChHHHHHHH
Confidence 9999843 234567889999999999999999999999999999999997432 2236777764322 235689999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~ 244 (467)
+|++++.++.+++++++++||+.+|||++.. ....++..+..+...... +...+|+|++|+|++++.++++
T Consensus 148 ~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~a~~~~~~~---- 220 (328)
T TIGR03466 148 AEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYV---DTGLNLVHVDDVAEGHLLALER---- 220 (328)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceee---CCCcceEEHHHHHHHHHHHHhC----
Confidence 9999999988789999999999999998653 223333333333322222 2346899999999999999972
Q ss_pred cccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccce
Q 012270 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324 (467)
Q Consensus 245 ~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (467)
...|+.|+++ ++++|+.|+++.+.+.+|.+.+...+|.+....++.+.+++....+ ..|.++...+.....+.
T Consensus 221 --~~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 293 (328)
T TIGR03466 221 --GRIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTG----KEPRVTVDGVRMAKKKM 293 (328)
T ss_pred --CCCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHhccC
Confidence 3457788886 5889999999999999999888889999999998888888777665 44555555555555677
Q ss_pred EeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 325 TFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 325 ~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
.+|++|+++.|||+|+ +++|+++++++|++++
T Consensus 294 ~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 294 FFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred CCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 8999999999999995 9999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=341.11 Aligned_cols=314 Identities=22% Similarity=0.231 Sum_probs=241.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
|+||||||+||||++|+++|+++|+..|+++++....... .. ........+++++.+|++|.+++.+++++ +|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 75 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNL--ES---LADVSDSERYVFEHADICDRAELDRIFAQHQPD 75 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchH--HH---HHhcccCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 5899999999999999999999996456666654310000 00 11111124578899999999999999874 89
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhC---------CCCeEEEEcCccccccCCCC--------CCCC
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC---------KVRRLVYNSTADVVFDGSHD--------IHNG 146 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~---------~v~r~v~~SS~~vyg~~~~~--------~~~~ 146 (467)
+|||+|+... ...+++.++++|+.|+.+++++|++. +++++||+||.++||....+ ..+.
T Consensus 76 ~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (352)
T PRK10084 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLF 155 (352)
T ss_pred EEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCc
Confidence 9999999432 23457889999999999999999874 46799999999999753211 1235
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+|+. +..|.+.|+.+|..+|++++.+++.+|++++++|++.+|||++. .+++.++..+..+.++.+++++++.++|
T Consensus 156 ~E~~--~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (352)
T PRK10084 156 TETT--AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (352)
T ss_pred cccC--CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence 6776 45788899999999999999998778999999999999999863 4677787778888877888999999999
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 304 (467)
+||+|+|++++.+++ ....+++||+++++++|+.|+++.+++.+|...+. ..|.. ..+....
T Consensus 234 v~v~D~a~a~~~~l~------~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~-~~~~~---------~~~~~~~-- 295 (352)
T PRK10084 234 LYVEDHARALYKVVT------EGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPK-ATSYR---------EQITYVA-- 295 (352)
T ss_pred EEHHHHHHHHHHHHh------cCCCCceEEeCCCCcCcHHHHHHHHHHHhcccccc-ccchh---------hhccccc--
Confidence 999999999999987 23356899999999999999999999999864321 11110 0000000
Q ss_pred cccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
..|. ....+.+|++|+++++||+|+++++++++++++|++++.
T Consensus 296 ---~~~~--------~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 296 ---DRPG--------HDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred ---cCCC--------CCceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 1110 012356899999999999999999999999999998853
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=338.05 Aligned_cols=316 Identities=16% Similarity=0.099 Sum_probs=235.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccC-CCCcCCCCCCC---cCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQL-DPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~---~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|+||||||+||||++|+++|+++| ++|++++|.+.... ..... +.. .....+++++.+|++|.+++.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 76 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSSFNTQRIEH---IYEDPHNVNKARMKLHYGDLTDSSNLRRIIDE 76 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcccchhhhhh---hhhccccccccceeEEEeccCCHHHHHHHHHh
Confidence 589999999999999999999999 59999998764100 00000 000 00124688999999999999999985
Q ss_pred --CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCC---eEEEEcCccccccCCCCCCCCCCCcccCCCC
Q 012270 85 --ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR---RLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (467)
Q Consensus 85 --~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~---r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~ 156 (467)
+|+|||+|+... +..++....++|+.|+.+++++|++.+++ ||||+||.++||... ..+.+|+. +..|
T Consensus 77 ~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~--~~~p 152 (343)
T TIGR01472 77 IKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQ--EIPQNETT--PFYP 152 (343)
T ss_pred CCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCC--CCCCCCCC--CCCC
Confidence 699999999432 33456778889999999999999998864 899999999997532 23578877 4578
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCC-ceEEecCCCccccccchhHH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-----~~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~Dv 230 (467)
.++|+.||..+|.+++.+++++|+++++.|+.++|||+... .+..++..+..|+ ...++|+|++.+||+||+|+
T Consensus 153 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~ 232 (343)
T TIGR01472 153 RSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDY 232 (343)
T ss_pred CChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHH
Confidence 89999999999999999988789999999999999996431 2344455555665 34567999999999999999
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCcc-------CChHHHHHHHHHHHHHHHHhc
Q 012270 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-------LPTGVVWYIILLVKWIHEKLG 303 (467)
Q Consensus 231 a~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~-------ip~~~~~~~~~~~~~~~~~~~ 303 (467)
|++++.++++ + . +++|||++++++|+.|+++.+.+.+|.+..... .|.+.. ...-
T Consensus 233 a~a~~~~~~~-----~-~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~ 294 (343)
T TIGR01472 233 VEAMWLMLQQ-----D-K-PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETG-----------KVHV 294 (343)
T ss_pred HHHHHHHHhc-----C-C-CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccC-----------ceeE
Confidence 9999999872 2 2 358999999999999999999999996532100 000000 0000
Q ss_pred ccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHH
Q 012270 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (467)
Q Consensus 304 ~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~ 356 (467)
........+... .....|++|++++|||+|+++++|+|+++++++++
T Consensus 295 --~~~~~~~~~~~~----~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 295 --EIDPRYFRPTEV----DLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred --EeCccccCCCcc----chhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 000000111111 12346999999999999999999999999999875
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=334.76 Aligned_cols=312 Identities=16% Similarity=0.135 Sum_probs=240.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCC--CcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
..++|+||||||+||||++++++|+++| ++|++++|.+......... .+. ......+++++.+|++|.+++.+++
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 79 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSNFNTQRLD--HIYIDPHPNKARMKLHYGDLSDASSLRRWL 79 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEecccccccccchh--hhccccccccCceEEEEecCCCHHHHHHHH
Confidence 3467899999999999999999999999 5999999865311000000 000 0011245889999999999999998
Q ss_pred hC--CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCC-----eEEEEcCccccccCCCCCCCCCCCccc
Q 012270 83 EG--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR-----RLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 83 ~~--~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-----r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++ +|+|||+|+... ...++...+++|+.|+.+++++|++.+++ +|||+||.++||.... +.+|+.
T Consensus 80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~---~~~E~~-- 154 (340)
T PLN02653 80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP---PQSETT-- 154 (340)
T ss_pred HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC---CCCCCC--
Confidence 85 699999999432 33566778899999999999999999875 8999999999975432 678887
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCCceE-EecCCCccccccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGWTKF-IIGSGENMSDFTY 226 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-~----~~~~~~~~~~g~~~~-~~g~g~~~~~~i~ 226 (467)
+..|.+.|+.+|.++|++++.++++++++++..|+.++|||+... + +..++..+..+.++. ..|++++.++|+|
T Consensus 155 ~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~ 234 (340)
T PLN02653 155 PFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGF 234 (340)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceeccee
Confidence 557889999999999999999988889999999999999996432 2 334445556676544 4589999999999
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC-CccCChHHHHHHHHHHHHHHHHhccc
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLR 305 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~ip~~~~~~~~~~~~~~~~~~~~~ 305 (467)
|+|+|++++.++++ . .++.||+++++++|+.|+++.+.+.+|.+.. .+.+
T Consensus 235 v~D~a~a~~~~~~~-----~--~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~---------------------- 285 (340)
T PLN02653 235 AGDYVEAMWLMLQQ-----E--KPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEI---------------------- 285 (340)
T ss_pred HHHHHHHHHHHHhc-----C--CCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceee----------------------
Confidence 99999999999982 2 2468999999999999999999999986421 1111
Q ss_pred ccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 306 ~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
..+...+... .....|++|++++|||+|+++++|+|+++++|+++..+
T Consensus 286 --~~~~~~~~~~----~~~~~d~~k~~~~lgw~p~~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 286 --DPRYFRPAEV----DNLKGDASKAREVLGWKPKVGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred --CcccCCcccc----ccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 1111111111 12356999999999999999999999999999987544
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=333.42 Aligned_cols=312 Identities=21% Similarity=0.179 Sum_probs=240.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+||||||+||||+++++.|+++|+ +|++++|.........+. + ....+++++.+|++|.+++.+++++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~---~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFEL---L---NLAKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHH---H---hhcCCceEEEccCCCHHHHHHHHhhcC
Confidence 468999999999999999999999994 999999876421100000 0 0123577899999999999999885
Q ss_pred CCEEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
+|+|||+|+.. .+..++...+++|+.++.+++++|++.+ ++++||+||.++|+.... ..+.+|+. +..|.++|
T Consensus 76 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-~~~~~e~~--~~~p~~~Y 152 (349)
T TIGR02622 76 PEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-VWGYRETD--PLGGHDPY 152 (349)
T ss_pred CCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-CCCCccCC--CCCCCCcc
Confidence 69999999932 2445678899999999999999999887 889999999999975422 23567776 44678899
Q ss_pred HHHHHHHHHHHHhhcCCC-------CceEEEEeCCCcccCCC---CCcHHHHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 161 CDLKAQAEALVLFANNID-------GLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~-------g~~~~ilRp~~i~G~~~---~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
+.+|..+|.+++.+++++ +++++++||+++|||++ ..+++.++..+.+|.++. .+++++.++|+|++|+
T Consensus 153 ~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~D~ 231 (349)
T TIGR02622 153 SSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVI-IRNPDATRPWQHVLEP 231 (349)
T ss_pred hhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeE-ECCCCcccceeeHHHH
Confidence 999999999998876543 89999999999999975 246788888888888755 4678999999999999
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEcCC--CCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccC
Q 012270 231 AHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (467)
Q Consensus 231 a~a~~~al~~~~~~~~~~~g~~yni~~~--~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 308 (467)
|++++.+++++... +...+++|||+++ +++++.|+++.+.+.++.....+..+.
T Consensus 232 a~a~~~~~~~~~~~-~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~----------------------- 287 (349)
T TIGR02622 232 LSGYLLLAEKLFTG-QAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDS----------------------- 287 (349)
T ss_pred HHHHHHHHHHHhhc-CccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeecc-----------------------
Confidence 99999988743211 1223579999974 789999999999988764321111110
Q ss_pred CCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 309 ~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.+ ..+.. .....+|++|++++|||+|+++++++++++++|+++..
T Consensus 288 ~~-~~~~~----~~~~~~d~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~~ 332 (349)
T TIGR02622 288 DL-NHPHE----ARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWL 332 (349)
T ss_pred CC-CCCcc----cceeecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 00110 12356799999999999999999999999999998764
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=362.13 Aligned_cols=310 Identities=22% Similarity=0.271 Sum_probs=244.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH--h
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--E 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--~ 83 (467)
++|+|||||||||||++|+++|+++|+ ++|++++|...... . . .+......++++++.+|++|.+.+..++ .
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~-~-~---~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 79 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSN-L-K---NLNPSKSSPNFKFVKGDIASADLVNYLLITE 79 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccch-h-h---hhhhcccCCCeEEEECCCCChHHHHHHHhhc
Confidence 578999999999999999999999842 58999987531000 0 0 0111112357899999999998888765 5
Q ss_pred CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCC-CCCCCCcccCCCCCC
Q 012270 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDI-HNGDETLTCCWKFQD 158 (467)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~-~~~~E~~p~~~~~~~ 158 (467)
++|+|||+|+... +..++...+++|+.++.+++++|++.+ ++||||+||..+||...... .+.+|+. +..|.+
T Consensus 80 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~--~~~p~~ 157 (668)
T PLN02260 80 GIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEAS--QLLPTN 157 (668)
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccC--CCCCCC
Confidence 7999999999433 334567788999999999999999987 89999999999997543321 2235655 446788
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
+|+.+|..+|++++.++++++++++++||+++|||++. .+++.++..+..++++.++|++++.++|+||+|+|+++..
T Consensus 158 ~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 158 PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 99999999999999988778999999999999999864 4678888888888888899999999999999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
+++ ....+++||+++++++|+.|+++.+.+.+|.+.... +.. .. ..| +.
T Consensus 238 ~l~------~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~-i~~----------------~~----~~p-~~--- 286 (668)
T PLN02260 238 VLH------KGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKS-IKF----------------VE----NRP-FN--- 286 (668)
T ss_pred HHh------cCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcce-eee----------------cC----CCC-CC---
Confidence 887 334567999999999999999999999999754210 100 00 111 10
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
...+.+|++|+++ |||+|+++++|+++++++|++++..
T Consensus 287 ----~~~~~~d~~k~~~-lGw~p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 287 ----DQRYFLDDQKLKK-LGWQERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred ----cceeecCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhChh
Confidence 1235679999975 9999999999999999999998765
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=333.05 Aligned_cols=304 Identities=22% Similarity=0.243 Sum_probs=228.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
..++|+|+||||+||||++++++|+++| ++|++++|+........ +.... ...+++++.+|++|.+++.++++
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 80 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERG-YTVKGTVRNPDDPKNTH-----LRELEGGKERLILCKADLQDYEALKAAID 80 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCchhhhHHH-----HHHhhCCCCcEEEEecCcCChHHHHHHHh
Confidence 3457899999999999999999999999 59999998754110000 00000 12358889999999999999999
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc-cccccCCC-CCCCCCCCccc----CCCCC
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA-DVVFDGSH-DIHNGDETLTC----CWKFQ 157 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~-~vyg~~~~-~~~~~~E~~p~----~~~~~ 157 (467)
++|+|||+|+.. ..++...+++|+.|+.+++++|++.+++|+||+||. ++||.... +..+.+|+.+. +.+|.
T Consensus 81 ~~d~Vih~A~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~ 158 (342)
T PLN02214 81 GCDGVFHTASPV--TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTK 158 (342)
T ss_pred cCCEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccc
Confidence 999999999964 346788899999999999999999999999999996 58864322 22357787531 33467
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC----cHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 158 ~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~----~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
+.|+.+|..+|++++.+++++|++++++||+++|||++.. .+..++. +..|... .. ++..++||||+|+|++
T Consensus 159 ~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~-~~~g~~~-~~--~~~~~~~i~V~Dva~a 234 (342)
T PLN02214 159 NWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLK-YLTGSAK-TY--ANLTQAYVDVRDVALA 234 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHH-HHcCCcc-cC--CCCCcCeeEHHHHHHH
Confidence 8999999999999999988789999999999999998653 1223333 3344432 23 3457899999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (467)
++.+++ .+. .++.||+++ ++.++.|+++.+.+.++.. .+|.... .+ ..+.
T Consensus 235 ~~~al~-----~~~-~~g~yn~~~-~~~~~~el~~~i~~~~~~~----~~~~~~~-------------~~----~~~~-- 284 (342)
T PLN02214 235 HVLVYE-----APS-ASGRYLLAE-SARHRGEVVEILAKLFPEY----PLPTKCK-------------DE----KNPR-- 284 (342)
T ss_pred HHHHHh-----Ccc-cCCcEEEec-CCCCHHHHHHHHHHHCCCC----CCCCCCc-------------cc----cCCC--
Confidence 999998 333 345899987 5789999999999998632 2221100 00 0110
Q ss_pred HHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 314 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.....+|++|+++ |||+| ++++|+|+++++|+++...
T Consensus 285 -------~~~~~~d~~k~~~-LG~~p-~~lee~i~~~~~~~~~~~~ 321 (342)
T PLN02214 285 -------AKPYKFTNQKIKD-LGLEF-TSTKQSLYDTVKSLQEKGH 321 (342)
T ss_pred -------CCccccCcHHHHH-cCCcc-cCHHHHHHHHHHHHHHcCC
Confidence 1134579999985 99999 5999999999999988653
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=321.51 Aligned_cols=280 Identities=14% Similarity=0.106 Sum_probs=221.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+||||||+||||++|+++|+++| +|++++|... .+.+|++|.+++.++++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~----------------------~~~~Dl~d~~~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALDVHST----------------------DYCGDFSNPEGVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEeccccc----------------------cccCCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999 3888887532 23589999999999988 589
Q ss_pred EEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|+.. .+..+++..+++|+.++.+++++|++.|+ ++||+||..||++. ...+.+|++ +.+|.+.|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~--~~~p~~E~~--~~~P~~~Yg~s 131 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGT--GDIPWQETD--ATAPLNVYGET 131 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCC--CCCCcCCCC--CCCCCCHHHHH
Confidence 999999943 34467788899999999999999999996 79999999999643 234788887 56788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC--CCccccccchhHHHHHHHHHHHHh
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS--GENMSDFTYVENVAHAHVCAAEAL 241 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~--g~~~~~~i~v~Dva~a~~~al~~~ 241 (467)
|..+|++++.++. +.+++||+++|||+...+++.+++.+..++++.++++ +.+.+++.+++|+++++..+++
T Consensus 132 K~~~E~~~~~~~~----~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~-- 205 (299)
T PRK09987 132 KLAGEKALQEHCA----KHLIFRTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALN-- 205 (299)
T ss_pred HHHHHHHHHHhCC----CEEEEecceecCCCCCCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhc--
Confidence 9999999988654 5799999999999877778888888888888888888 6666677778888888888775
Q ss_pred ccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcC---CCCC---CccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG---YQRP---FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 242 ~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g---~~~~---~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
.+.. +++||+++++++|+.|+++.+.+.++ .+.+ ...+|... . ..+...|
T Consensus 206 ---~~~~-~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~--------------~-----~~~~~rp- 261 (299)
T PRK09987 206 ---KPEV-AGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSA--------------Y-----PTPARRP- 261 (299)
T ss_pred ---cCCC-CCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhh--------------c-----CCCCCCC-
Confidence 2222 35999999999999999999988643 3321 11222110 0 1111111
Q ss_pred HHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHH
Q 012270 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~ 354 (467)
....+|++|+++.+||+|+ +|+|+|+++++.+
T Consensus 262 ------~~~~ld~~k~~~~lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 262 ------HNSRLNTEKFQQNFALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred ------CcccCCHHHHHHHhCCCCc-cHHHHHHHHHHHH
Confidence 2346799999999999995 9999999998754
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=327.50 Aligned_cols=313 Identities=19% Similarity=0.203 Sum_probs=237.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+|+|||||||||++|+++|+++| ++|++++|........... .... ....+++++.+|++|++++.++++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~ 79 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRR---VKELAGDLGDNLVFHKVDLRDKEALEKVFAS 79 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHH---HHHhhcccCccceEEecCcCCHHHHHHHHHh
Confidence 56899999999999999999999999 4999998754311000000 0000 012468899999999999999886
Q ss_pred -CCCEEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 84 -GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 84 -~~D~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
++|+|||+|+.. ....++...+++|+.++.+++++|++.+++++||+||+.+||.. ...+.+|+. +.+|.+.
T Consensus 80 ~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~--~~~~~~E~~--~~~~~~~ 155 (352)
T PLN02240 80 TRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQP--EEVPCTEEF--PLSATNP 155 (352)
T ss_pred CCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCC--CCCCCCCCC--CCCCCCH
Confidence 589999999843 23356788999999999999999999999999999999999643 334678887 5567889
Q ss_pred HHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCC------------CcHHHHHHHhcCCC--ceEEec------CC
Q 012270 160 MCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKPGW--TKFIIG------SG 218 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~-~g~~~~ilRp~~i~G~~~~------------~~~~~~~~~~~~g~--~~~~~g------~g 218 (467)
|+.+|..+|++++.++.. .+++++++|++++||++.. .+++ ++..+..++ .+.+.| +|
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g 234 (352)
T PLN02240 156 YGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMP-YVQQVAVGRRPELTVFGNDYPTKDG 234 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHH-HHHHHHhCCCCceEEeCCCCCCCCC
Confidence 999999999999987643 5799999999999997531 1223 333444333 344554 67
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHH
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~ 298 (467)
.+.++|||++|+|++++.+++++.. .+...+++||+++++++|+.|+++.+.+.+|.+.+....|.+
T Consensus 235 ~~~~~~i~v~D~a~a~~~a~~~~~~-~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~------------ 301 (352)
T PLN02240 235 TGVRDYIHVMDLADGHIAALRKLFT-DPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRR------------ 301 (352)
T ss_pred CEEEeeEEHHHHHHHHHHHHhhhhh-ccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCC------------
Confidence 8899999999999999998874311 123446899999999999999999999999976554333211
Q ss_pred HHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
+. .. .....|++|++++|||+|+++++|+|+++++|++++...
T Consensus 302 -----------~~-~~-------~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 302 -----------PG-DA-------EEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred -----------CC-Ch-------hhhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 10 00 123468999999999999999999999999999987543
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=321.86 Aligned_cols=305 Identities=23% Similarity=0.250 Sum_probs=241.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
+|+|||||||||++++++|+++|+ ++|++++|...... .+. .......++++++.+|++|++++.+++++ +|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 75 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN--LEN---LADLEDNPRYRFVKGDIGDRELVSRLFTEHQPD 75 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh--hhh---hhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCC
Confidence 589999999999999999999873 48998887432100 000 11111234688999999999999999987 99
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
+|||+|+... +..+++..+++|+.++.+++++|++.+.+ ++||+||..+||..... .+.+|+. +..|.+.|+.
T Consensus 76 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~-~~~~e~~--~~~~~~~Y~~ 152 (317)
T TIGR01181 76 AVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKG-DAFTETT--PLAPSSPYSA 152 (317)
T ss_pred EEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCC-CCcCCCC--CCCCCCchHH
Confidence 9999999432 33567788999999999999999997543 89999999999754322 2567776 4467789999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHH
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~ 240 (467)
+|..+|++++.++.+.+++++++||+.+|||+.. .+++.++..+..++++.+++++++.++|+|++|+|+++..+++
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~- 231 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLE- 231 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHc-
Confidence 9999999999988778999999999999999753 4677888888888888888999999999999999999999987
Q ss_pred hccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHh
Q 012270 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLA 320 (467)
Q Consensus 241 ~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (467)
+...+++||+++++++++.|+++.+.+.+|.+...+.... ..+. .
T Consensus 232 -----~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~~----~---- 276 (317)
T TIGR01181 232 -----KGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVE----------------------DRPG----H---- 276 (317)
T ss_pred -----CCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccC----------------------CCcc----c----
Confidence 3345679999999999999999999999986533211100 0110 0
Q ss_pred ccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 321 SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 321 ~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
...+.+|++|+++++||+|+++++++++++++|++++.
T Consensus 277 ~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~~ 314 (317)
T TIGR01181 277 DRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDNE 314 (317)
T ss_pred hhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcc
Confidence 01234789999999999999899999999999998753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=325.17 Aligned_cols=310 Identities=21% Similarity=0.194 Sum_probs=224.6
Q ss_pred CCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 4 DEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 4 ~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.+.++|+||||||+||||++|+++|+++| ++|+++.|+......... .......++++++.+|++|.+++.++++
T Consensus 5 ~~~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (338)
T PLN00198 5 TPTGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPENQKKIAH----LRALQELGDLKIFGADLTDEESFEAPIA 79 (338)
T ss_pred cCCCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHH----HHhcCCCCceEEEEcCCCChHHHHHHHh
Confidence 34457899999999999999999999999 599888887531100000 0000111358899999999999999999
Q ss_pred CCCEEEEcccCCC-CCCCh-hhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCC--CCCCCCCCcc-------
Q 012270 84 GASTVFYVDATDL-NTDDF-YNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH--DIHNGDETLT------- 151 (467)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~-~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~--~~~~~~E~~p------- 151 (467)
++|+|||+|+... ...++ ...+++|+.++.+++++|++. +++|+||+||.++||.... ...+.+|+.+
T Consensus 80 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~ 159 (338)
T PLN00198 80 GCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLT 159 (338)
T ss_pred cCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhh
Confidence 9999999999533 22333 346799999999999999887 5899999999999974321 1224455421
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHH---HHHHhcCCCceEEec-CCCc----ccc
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPL---LVNLAKPGWTKFIIG-SGEN----MSD 223 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~---~~~~~~~g~~~~~~g-~g~~----~~~ 223 (467)
.+..|.++|+.+|..+|++++.+++++|++++++||+++|||+....++. ++..+..++.+.+.| ++.+ .++
T Consensus 160 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (338)
T PLN00198 160 SEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSIS 239 (338)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcc
Confidence 02346778999999999999999888899999999999999986432221 233455566555555 2322 379
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhc
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 303 (467)
|+||+|+|++++.+++ .+. .++.| ++++.++++.|+++.+.+.++... +|... +
T Consensus 240 ~i~V~D~a~a~~~~~~-----~~~-~~~~~-~~~~~~~s~~el~~~i~~~~~~~~----~~~~~---------------~ 293 (338)
T PLN00198 240 ITHVEDVCRAHIFLAE-----KES-ASGRY-ICCAANTSVPELAKFLIKRYPQYQ----VPTDF---------------G 293 (338)
T ss_pred eeEHHHHHHHHHHHhh-----CcC-cCCcE-EEecCCCCHHHHHHHHHHHCCCCC----CCccc---------------c
Confidence 9999999999999987 232 23467 455578999999999999876421 22110 0
Q ss_pred ccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 304 ~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
..+. ......|.+|+++ +||+|+++++|+|+++++|+++..
T Consensus 294 ----~~~~---------~~~~~~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~~ 334 (338)
T PLN00198 294 ----DFPS---------KAKLIISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAKG 334 (338)
T ss_pred ----ccCC---------CCccccChHHHHh-CCceecCcHHHHHHHHHHHHHHcC
Confidence 1110 0124578999998 699999999999999999998743
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=322.45 Aligned_cols=305 Identities=19% Similarity=0.165 Sum_probs=227.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+|++|||||+||||++++++|+++| ++|++++|+....... .. .........+++++.+|++|.+++.++++++|
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~-~~--~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d 79 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG-YTINATVRDPKDRKKT-DH--LLALDGAKERLKLFKADLLDEGSFELAIDGCE 79 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCCcchhhH-HH--HHhccCCCCceEEEeCCCCCchHHHHHHcCCC
Confidence 46899999999999999999999999 5998888775421000 00 00000112468899999999999999999999
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCC---CCCCCCCCcccCC----C
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH---DIHNGDETLTCCW----K 155 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~---~~~~~~E~~p~~~----~ 155 (467)
+|||+|+... +..++...+++|+.++.+++++|.+. +++|+|++||.++|+.... +..+.+|+.|..+ .
T Consensus 80 ~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~ 159 (325)
T PLN02989 80 TVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEE 159 (325)
T ss_pred EEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcc
Confidence 9999999432 23456788999999999999999885 6789999999988864321 2345788875322 1
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEecCCCccccccchhHHHH
Q 012270 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 156 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
+.++|+.+|..+|++++.+++.+|++++++||+++|||+... +...++..+..|+.+. + .+.++|+||+|+|+
T Consensus 160 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~ 235 (325)
T PLN02989 160 RKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPF--N--TTHHRFVDVRDVAL 235 (325)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHH
Confidence 346899999999999999888789999999999999998643 4445555555665432 2 34589999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
+++.+++ .+.. ++.||+++ +++|+.|+++.+.+.++... ++.. ..+.+..
T Consensus 236 a~~~~l~-----~~~~-~~~~ni~~-~~~s~~ei~~~i~~~~~~~~----~~~~-------------------~~~~~~~ 285 (325)
T PLN02989 236 AHVKALE-----TPSA-NGRYIIDG-PVVTIKDIENVLREFFPDLC----IADR-------------------NEDITEL 285 (325)
T ss_pred HHHHHhc-----Cccc-CceEEEec-CCCCHHHHHHHHHHHCCCCC----CCCC-------------------CCCcccc
Confidence 9999987 2333 45899954 68999999999999987321 1100 0010000
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
-...+..|.+|+++ |||+|+++++|+|+++++|+++.
T Consensus 286 -------~~~~~~~~~~k~~~-lg~~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 286 -------NSVTFNVCLDKVKS-LGIIEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred -------cccCcCCCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 01134578999887 99999999999999999999764
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=317.86 Aligned_cols=299 Identities=28% Similarity=0.361 Sum_probs=241.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC-CE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA-ST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-D~ 87 (467)
|+|||||||||||++|++.|+++| ++|++++|...... ... .++.++.+|+.|.+...++.+++ |+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~-----------~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~ 67 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLD-----------PLL-SGVEFVVLDLTDRDLVDELAKGVPDA 67 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCcccc-----------ccc-cccceeeecccchHHHHHHHhcCCCE
Confidence 459999999999999999999999 49999999775211 011 56889999999998888888888 99
Q ss_pred EEEcccCCCCC---C-ChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 88 VFYVDATDLNT---D-DFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 88 Vih~aa~~~~~---~-~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
|||+|+..... . ++...+++|+.++.+++++|++.+++|+||+||.++|+.. ....+.+|+. .+..|.++|+.+
T Consensus 68 vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~-~~~~~~~E~~-~~~~p~~~Yg~s 145 (314)
T COG0451 68 VIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGD-PPPLPIDEDL-GPPRPLNPYGVS 145 (314)
T ss_pred EEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCC-CCCCCccccc-CCCCCCCHHHHH
Confidence 99999944322 1 4567999999999999999999999999999998988755 3334788874 366777799999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCc-eEEecCCCccccccchhHHHHHHHHH
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-----~~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
|.++|+.++.+.+.+|++++++||+.+|||++.. +...++..+..+.+ +...+++...++++|++|+|++++.+
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 225 (314)
T COG0451 146 KLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225 (314)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHH
Confidence 9999999999988778999999999999998764 34445555667775 66777888889999999999999999
Q ss_pred HHHhccccccCCCcEEEEcCCC-CcCHHHHHHHHHHHcCCCCCC-ccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 238 AEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~~-~~s~~el~~~i~~~~g~~~~~-~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
+++ + ..+ .||+++++ +.+++|+++.+.+.+|.+.+. ...+. .
T Consensus 226 ~~~-----~-~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-----------------------------~ 269 (314)
T COG0451 226 LEN-----P-DGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPL-----------------------------G 269 (314)
T ss_pred HhC-----C-CCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCC-----------------------------C
Confidence 983 2 233 99999997 999999999999999988652 21110 0
Q ss_pred HHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
..........+|.+|++++|||+|++++++++.++++|+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 270 RRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 0011123456899999999999999999999999999998753
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=319.28 Aligned_cols=304 Identities=19% Similarity=0.181 Sum_probs=223.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
..|+||||||+||||++++++|+++|+ +|++++|+....... .. ........++++++.+|++|++++.++++++|
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 78 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPNDPKKT-EH--LLALDGAKERLHLFKANLLEEGSFDSVVDGCE 78 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhH-HH--HHhccCCCCceEEEeccccCcchHHHHHcCCC
Confidence 458999999999999999999999995 999999875411000 00 00000112478899999999999999999999
Q ss_pred EEEEcccCCC-CCCChh-hHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccc--cccCCC-CCCCCCCCcccCC----CC
Q 012270 87 TVFYVDATDL-NTDDFY-NCYMIIVQGAKNVVTACREC-KVRRLVYNSTADV--VFDGSH-DIHNGDETLTCCW----KF 156 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~-~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~v--yg~~~~-~~~~~~E~~p~~~----~~ 156 (467)
+|||+|+... ...++. .++++|+.|+.+++++|++. +++|+||+||.++ |++.+. +..+.+|+.+..+ ..
T Consensus 79 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~ 158 (322)
T PLN02662 79 GVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEES 158 (322)
T ss_pred EEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcc
Confidence 9999999543 233443 78899999999999999988 8999999999874 543221 2235777764211 12
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
.+.|+.+|..+|++++.++++++++++++||+++|||+... ....++..+..|... .+++.++||||+|+|++
T Consensus 159 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~a 234 (322)
T PLN02662 159 KLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT----FPNASYRWVDVRDVANA 234 (322)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc----CCCCCcCeEEHHHHHHH
Confidence 36899999999999999887789999999999999997542 334444444445431 23467899999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (467)
++.+++ .+... +.||+++ +++|+.|+++.+.+.++.. .+|.+.. + ..+
T Consensus 235 ~~~~~~-----~~~~~-~~~~~~g-~~~s~~e~~~~i~~~~~~~----~~~~~~~--------------~----~~~--- 282 (322)
T PLN02662 235 HIQAFE-----IPSAS-GRYCLVE-RVVHYSEVVKILHELYPTL----QLPEKCA--------------D----DKP--- 282 (322)
T ss_pred HHHHhc-----CcCcC-CcEEEeC-CCCCHHHHHHHHHHHCCCC----CCCCCCC--------------C----ccc---
Confidence 999997 33333 4788975 7899999999999987642 1221100 0 000
Q ss_pred HHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 314 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
......+|++|+++ |||+| ++++|+++++++|+++..
T Consensus 283 ------~~~~~~~d~~k~~~-lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
T PLN02662 283 ------YVPTYQVSKEKAKS-LGIEF-IPLEVSLKDTVESLKEKG 319 (322)
T ss_pred ------cccccccChHHHHH-hCCcc-ccHHHHHHHHHHHHHHcC
Confidence 01124589999996 99998 599999999999998753
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=307.75 Aligned_cols=306 Identities=23% Similarity=0.209 Sum_probs=230.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|+|+||||+||||+|+++.|+++| |+|+++.|++...- .. ..+.+. ...++...+.+|+.|++++.++++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k---~~-~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEK---KT-EHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhh---hH-HHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 67899999999999999999999999 59999999987310 00 001111 22456899999999999999999999
Q ss_pred CEEEEcccCCCCC-C-ChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccC---CCCCCCCCCCcccCCC----
Q 012270 86 STVFYVDATDLNT-D-DFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDG---SHDIHNGDETLTCCWK---- 155 (467)
Q Consensus 86 D~Vih~aa~~~~~-~-~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~---~~~~~~~~E~~p~~~~---- 155 (467)
|.|||+|.+.... . .+.+..+++++||.|++++|++.. |||+||+||+++.... ..+...+||+.+.+..
T Consensus 80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~ 159 (327)
T KOG1502|consen 80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRC 159 (327)
T ss_pred CEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHh
Confidence 9999999965432 2 245799999999999999999997 9999999999887533 3344567888764222
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEecCCCccccccchhHHHH
Q 012270 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 156 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
-...|..+|..+|+..++++++.|++.+.+.|+.|+||.... ..........+|..-..+ +.+..||||+|+|.
T Consensus 160 ~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~---n~~~~~VdVrDVA~ 236 (327)
T KOG1502|consen 160 KKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYP---NFWLAFVDVRDVAL 236 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCC---CCceeeEeHHHHHH
Confidence 236899999999999999999999999999999999998664 223334445556432222 34456999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
||+.++| .+...| .|.+.+ +..++.|+++.+.+.++.-. +|...- +...+.
T Consensus 237 AHv~a~E-----~~~a~G-Ryic~~-~~~~~~ei~~~l~~~~P~~~----ip~~~~-----------------~~~~~~- 287 (327)
T KOG1502|consen 237 AHVLALE-----KPSAKG-RYICVG-EVVSIKEIADILRELFPDYP----IPKKNA-----------------EEHEGF- 287 (327)
T ss_pred HHHHHHc-----CcccCc-eEEEec-CcccHHHHHHHHHHhCCCCC----CCCCCC-----------------cccccc-
Confidence 9999999 455555 787777 56669999999998876432 332110 000110
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.....++.+|++++.|++.+ +++|++.++++++++..
T Consensus 288 --------~~~~~~~~~k~k~lg~~~~~-~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 288 --------LTSFKVSSEKLKSLGGFKFR-PLEETLSDTVESLREKG 324 (327)
T ss_pred --------ccccccccHHHHhcccceec-ChHHHHHHHHHHHHHhc
Confidence 01235799999995558884 99999999999998864
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=318.14 Aligned_cols=283 Identities=17% Similarity=0.214 Sum_probs=221.8
Q ss_pred EEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCCEEE
Q 012270 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GASTVF 89 (467)
Q Consensus 12 lVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~Vi 89 (467)
||||||||||++|++.|+++|+ +|+++.+. ..+|++|.+++.++++ ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-~v~~~~~~-------------------------~~~Dl~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-TNLVLRTH-------------------------KELDLTRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-cEEEeecc-------------------------ccCCCCCHHHHHHHHhccCCCEEE
Confidence 6999999999999999999995 66655321 1479999999999887 479999
Q ss_pred EcccCCC----CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc--CCCCCC-hHHH
Q 012270 90 YVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQD-LMCD 162 (467)
Q Consensus 90 h~aa~~~----~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~--~~~~~~-~Y~~ 162 (467)
|+|+... ...++...++.|+.++.+++++|++.+++|+||+||..|||.. ...+.+|+++. +..|.+ .|+.
T Consensus 55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~--~~~~~~E~~~~~~~~~p~~~~Y~~ 132 (306)
T PLN02725 55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKF--APQPIPETALLTGPPEPTNEWYAI 132 (306)
T ss_pred EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCC--CCCCCCHHHhccCCCCCCcchHHH
Confidence 9998432 3356778899999999999999999999999999999999643 23567887632 234444 5999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHH----HhcCCCceEE-ecCCCccccccchhHHH
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVN----LAKPGWTKFI-IGSGENMSDFTYVENVA 231 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~----~~~~g~~~~~-~g~g~~~~~~i~v~Dva 231 (467)
+|.++|++++.+++..+++++++||+.+|||++. ..++.++. ....+.++.+ ++++++.++|+|++|+|
T Consensus 133 sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~ 212 (306)
T PLN02725 133 AKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLA 212 (306)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHH
Confidence 9999999999888778999999999999999753 23444443 3345665554 78889999999999999
Q ss_pred HHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 012270 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (467)
Q Consensus 232 ~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (467)
++++.+++. . ..++.||+++++++|+.|+++.+.+.+|.+......+. .+.
T Consensus 213 ~~~~~~~~~-----~-~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-----------------------~~~ 263 (306)
T PLN02725 213 DAVVFLMRR-----Y-SGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTS-----------------------KPD 263 (306)
T ss_pred HHHHHHHhc-----c-ccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCC-----------------------CCC
Confidence 999999872 2 23458999999999999999999999986543211110 000
Q ss_pred chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
. .....+|++|+++ +||+|+++++|+++++++|++++..+
T Consensus 264 ~--------~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~~~~~ 303 (306)
T PLN02725 264 G--------TPRKLMDSSKLRS-LGWDPKFSLKDGLQETYKWYLENYET 303 (306)
T ss_pred c--------ccccccCHHHHHH-hCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 0 0124579999975 99999999999999999999987643
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=317.54 Aligned_cols=307 Identities=19% Similarity=0.204 Sum_probs=230.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+|+||||+||||++++++|+++| ++|++++|........... +. .....+++++.+|++|.+++.++++ ++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 75 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLPV---IE-RLGGKHPTFVEGDIRNEALLTEILHDHAID 75 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEecCCCchHhHHHH---HH-HhcCCCceEEEccCCCHHHHHHHHhcCCCC
Confidence 689999999999999999999999 5999987643210000000 00 0112356788999999999998886 589
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|+... ...++...+++|+.++.+++++|++.+++++|++||.++||.. ...+.+|+.| ...|.+.|+.+
T Consensus 76 ~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~--~~~~~~E~~~-~~~p~~~Y~~s 152 (338)
T PRK10675 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQ--PKIPYVESFP-TGTPQSPYGKS 152 (338)
T ss_pred EEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCC--CCCccccccC-CCCCCChhHHH
Confidence 9999998432 2345677899999999999999999999999999999999643 3346788874 23578899999
Q ss_pred HHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCC------------CcHHHHHHHhcCCC-ceEEec------CCCcccc
Q 012270 164 KAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKPGW-TKFIIG------SGENMSD 223 (467)
Q Consensus 164 K~~~E~~v~~~~~~-~g~~~~ilRp~~i~G~~~~------------~~~~~~~~~~~~g~-~~~~~g------~g~~~~~ 223 (467)
|..+|++++.+++. .+++++++|++++|||+.. .+++.+.+....+. .+.++| +|.++++
T Consensus 153 K~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 232 (338)
T PRK10675 153 KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232 (338)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEe
Confidence 99999999998754 3799999999999997421 12333333333222 234444 5778899
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhc
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 303 (467)
|+|++|+|++++.+++... ....+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 233 ~v~v~D~a~~~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------- 292 (338)
T PRK10675 233 YIHVMDLADGHVAAMEKLA---NKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRR----------------- 292 (338)
T ss_pred eEEHHHHHHHHHHHHHhhh---ccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCC-----------------
Confidence 9999999999999987310 12345799999999999999999999999976543222210
Q ss_pred ccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 304 ~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
+ ... ....+|++|+++++||+|+++++++++++++|++++
T Consensus 293 ------~---~~~-----~~~~~~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK10675 293 ------E---GDL-----PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRH 332 (338)
T ss_pred ------C---Cch-----hhhhcCHHHHHHHhCCCCcCcHHHHHHHHHHHHHhh
Confidence 0 000 123479999999999999999999999999999885
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=317.88 Aligned_cols=287 Identities=18% Similarity=0.171 Sum_probs=210.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH---HH-HHHHHh---
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQ-IKKVLE--- 83 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~-l~~~~~--- 83 (467)
||||||+||||++|+++|+++|+ +++++.|..... . . ......+|+.|. +. +.++++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~-----~-----~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~ 65 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDG-----T-----K-----FVNLVDLDIADYMDKEDFLAQIMAGDD 65 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcc-----h-----H-----HHhhhhhhhhhhhhHHHHHHHHhcccc
Confidence 89999999999999999999994 555544332200 0 0 011223455443 33 233332
Q ss_pred --CCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 84 --GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 84 --~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
++|+|||+|+... ...++...++.|+.++.+++++|++.++ ++||+||+++||+... .+.+|+. +..|.++|
T Consensus 66 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~--~~~~E~~--~~~p~~~Y 140 (308)
T PRK11150 66 FGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTD--DFIEERE--YEKPLNVY 140 (308)
T ss_pred cCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCC--CCCccCC--CCCCCCHH
Confidence 6899999998322 2234566899999999999999999998 6999999999975422 3567766 45778899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEe-cCCCccccccchhHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHA 233 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~------~~~~~~~~~~~g~~~~~~-g~g~~~~~~i~v~Dva~a 233 (467)
+.+|..+|+++++++...+++++++||+++|||++.. ....+...+.+|..+.++ |+++..++|+||+|+|++
T Consensus 141 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a 220 (308)
T PRK11150 141 GYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAV 220 (308)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHH
Confidence 9999999999999987789999999999999998632 223444666777654444 666778999999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCC-CCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR-PFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~-~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
++.+++. . .+++||+++++++|+.|+++.+.+.+|... .....|.. .
T Consensus 221 ~~~~~~~------~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~-------------------------~ 268 (308)
T PRK11150 221 NLWFWEN------G-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDK-------------------------L 268 (308)
T ss_pred HHHHHhc------C-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccc-------------------------c
Confidence 9998872 2 245999999999999999999999998531 11111110 0
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccc-cChHHHHHHHHHHHH
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPV-VSLEEGVSSTIQSFS 355 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~l~e~i~~~i~~~~ 355 (467)
.. ........|.+|+++ +||+|+ .+++|+++++++|+.
T Consensus 269 ~~----~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 269 KG----RYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred cc----ccceecccCHHHHHh-cCCCCCCCCHHHHHHHHHHHhh
Confidence 00 011123579999997 799987 499999999999975
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=321.85 Aligned_cols=307 Identities=21% Similarity=0.207 Sum_probs=219.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
..|+||||||+||||++++++|+++| ++|++++|+.......... ........+++++.+|++|.+.+.++++++|
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d 79 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANVKKVKHL---LDLPGATTRLTLWKADLAVEGSFDDAIRGCT 79 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcCcchhHHHHHH---HhccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence 56799999999999999999999999 5999998865411100000 0000011358889999999999999999999
Q ss_pred EEEEcccCCCC-CCCh-hhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCccc-------CCCC
Q 012270 87 TVFYVDATDLN-TDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTC-------CWKF 156 (467)
Q Consensus 87 ~Vih~aa~~~~-~~~~-~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~-------~~~~ 156 (467)
+|||+|+.... ..++ ...+++|+.|+.+++++|++.+ ++||||+||.++|+.........+|+.+. +..|
T Consensus 80 ~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (351)
T PLN02650 80 GVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT 159 (351)
T ss_pred EEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence 99999984332 2233 4788999999999999999987 88999999998886432222224665321 1234
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc-HHHHHHH--hcCCCceEEecCCCccccccchhHHHHH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL-VPLLVNL--AKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~-~~~~~~~--~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
.++|+.+|..+|++++.+++++|++++++||+++|||+.... .+.++.. ...+... ..+.. +.++|+||+|+|++
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~r~~v~V~Dva~a 237 (351)
T PLN02650 160 GWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEA-HYSII-KQGQFVHLDDLCNA 237 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCcc-ccCcC-CCcceeeHHHHHHH
Confidence 568999999999999999888899999999999999976432 2222221 1223321 22222 34799999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (467)
++.+++ .+.. ++.| +++++++|+.|+++.+.+.++.. .+|... . ..+
T Consensus 238 ~~~~l~-----~~~~-~~~~-i~~~~~~s~~el~~~i~~~~~~~----~~~~~~---------------~----~~~--- 284 (351)
T PLN02650 238 HIFLFE-----HPAA-EGRY-ICSSHDATIHDLAKMLREKYPEY----NIPARF---------------P----GID--- 284 (351)
T ss_pred HHHHhc-----CcCc-CceE-EecCCCcCHHHHHHHHHHhCccc----CCCCCC---------------C----CcC---
Confidence 999997 2333 3478 56668899999999999987632 122110 0 000
Q ss_pred HHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 314 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.. .....+|.+|++ +|||+|+++++|+|+++++|+++..
T Consensus 285 ~~-----~~~~~~d~~k~~-~lG~~p~~~l~egl~~~i~~~~~~~ 323 (351)
T PLN02650 285 ED-----LKSVEFSSKKLT-DLGFTFKYSLEDMFDGAIETCREKG 323 (351)
T ss_pred cc-----cccccCChHHHH-HhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 00 012346888875 5999999999999999999998754
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=316.02 Aligned_cols=303 Identities=18% Similarity=0.168 Sum_probs=223.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++||||||+||||++++++|+++| ++|+++.|+.......... ........+++++.+|++|++++.++++++|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 79 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRKKTEHL---LALDGAKERLKLFKADLLEESSFEQAIEGCD 79 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCCcchHHHHHH---HhccCCCCceEEEecCCCCcchHHHHHhCCC
Confidence 46899999999999999999999999 5999888866421100000 0000112468999999999999999999999
Q ss_pred EEEEcccCCC-CCCCh-hhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCC---CCCCCCCCcccCC----CC
Q 012270 87 TVFYVDATDL-NTDDF-YNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH---DIHNGDETLTCCW----KF 156 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~-~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~---~~~~~~E~~p~~~----~~ 156 (467)
+|||+|+... ...++ ...+++|+.|+.+++++|++. +++|+||+||.++|+.+.. .....+|+.+..+ .+
T Consensus 80 ~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 159 (322)
T PLN02986 80 AVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRET 159 (322)
T ss_pred EEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcc
Confidence 9999999532 22233 457899999999999999986 7999999999987532221 2235677764322 34
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
.+.|+.+|..+|++++++.+++|++++++||+++|||+... ....++..+..|.+. .+ .+.++||||+|+|++
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~~--~~~~~~v~v~Dva~a 235 (322)
T PLN02986 160 KNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--FN--NRFYRFVDVRDVALA 235 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--CC--CcCcceeEHHHHHHH
Confidence 67899999999999999988789999999999999997542 234455555556542 33 467899999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (467)
++.+++ .+... +.||+++ +++|+.|+++.+.+.++.- .+|.. .+
T Consensus 236 ~~~al~-----~~~~~-~~yni~~-~~~s~~e~~~~i~~~~~~~----~~~~~----------------------~~--- 279 (322)
T PLN02986 236 HIKALE-----TPSAN-GRYIIDG-PIMSVNDIIDILRELFPDL----CIADT----------------------NE--- 279 (322)
T ss_pred HHHHhc-----CcccC-CcEEEec-CCCCHHHHHHHHHHHCCCC----CCCCC----------------------Cc---
Confidence 999998 34333 4899954 6899999999999998731 12210 00
Q ss_pred HHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 314 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
+.. ........|.+|++. |||+|+ +++|+++++++|+++.
T Consensus 280 ~~~--~~~~~~~~d~~~~~~-lg~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 280 ESE--MNEMICKVCVEKVKN-LGVEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred ccc--ccccCCccCHHHHHH-cCCccc-CHHHHHHHHHHHHHHc
Confidence 000 000112478899876 999997 9999999999999874
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=313.70 Aligned_cols=294 Identities=20% Similarity=0.183 Sum_probs=225.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----CCC
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----GAS 86 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~~D 86 (467)
|||||||||||+++++.|+++|+++|.+++|..... . +.. .....+.+|+++.+.++.+.+ ++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-----~---~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-----K---FLN----LADLVIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-----h---hhh----hhheeeeccCcchhHHHHHHhhccCCCC
Confidence 689999999999999999999954788888754311 0 110 112356788988887777664 799
Q ss_pred EEEEcccCC-CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 012270 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (467)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~ 165 (467)
+|||+|+.. ....++...+++|+.++.+++++|++.++ ++||+||.++|++.. .+.+|+.+ +..|.+.|+.+|.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~---~~~~e~~~-~~~p~~~Y~~sK~ 143 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGE---AGFREGRE-LERPLNVYGYSKF 143 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCC---CCcccccC-cCCCCCHHHHHHH
Confidence 999999943 33456778899999999999999999987 899999999997543 24455543 3357889999999
Q ss_pred HHHHHHHhhcC--CCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEe------cCCCccccccchhHHH
Q 012270 166 QAEALVLFANN--IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFII------GSGENMSDFTYVENVA 231 (467)
Q Consensus 166 ~~E~~v~~~~~--~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~------g~g~~~~~~i~v~Dva 231 (467)
.+|++++++.. ..+++++++||+.+|||++. .++..++..+..++++.++ ++|++.++|+|++|+|
T Consensus 144 ~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a 223 (314)
T TIGR02197 144 LFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVV 223 (314)
T ss_pred HHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHH
Confidence 99999987532 24679999999999999853 2455667777777766554 4677889999999999
Q ss_pred HHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 012270 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (467)
Q Consensus 232 ~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (467)
+++..+++ . ..+++||+++++++|+.|+++.+.+.+|.+......|. |.
T Consensus 224 ~~i~~~~~-----~--~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------------------------~~ 272 (314)
T TIGR02197 224 DVNLWLLE-----N--GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPM------------------------PE 272 (314)
T ss_pred HHHHHHHh-----c--ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccC------------------------cc
Confidence 99999998 2 34569999999999999999999999997643222221 10
Q ss_pred chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHH
Q 012270 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (467)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~ 355 (467)
... ........+|++|+++.+||+|+++++|+++++++|+.
T Consensus 273 ~~~---~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 273 ALR---GKYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred ccc---cccccccccchHHHHHhcCCCCcccHHHHHHHHHHHHh
Confidence 000 00111245799999999999999999999999999975
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=319.46 Aligned_cols=308 Identities=18% Similarity=0.219 Sum_probs=219.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
...|+||||||+||||++++++|+++| ++|++++|+....... ........+++++.+|++|.+++.++++++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~------~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRDPAKSLHL------LSKWKEGDRLRLFRADLQEEGSFDEAVKGC 80 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChHHHHHH------HHhhccCCeEEEEECCCCCHHHHHHHHcCC
Confidence 357899999999999999999999999 5999988865311000 001011246889999999999999999999
Q ss_pred CEEEEcccCCC-----CCCChhh-----HHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCC---CCCCCCCcc
Q 012270 86 STVFYVDATDL-----NTDDFYN-----CYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHD---IHNGDETLT 151 (467)
Q Consensus 86 D~Vih~aa~~~-----~~~~~~~-----~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~---~~~~~E~~p 151 (467)
|+|||+|+... ...+++. .+++|+.++.+++++|++.+ +++|||+||.++||..+.. ..+.+|+.+
T Consensus 81 d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~ 160 (353)
T PLN02896 81 DGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQ 160 (353)
T ss_pred CEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccC
Confidence 99999999432 1234443 34455699999999999885 8999999999999743211 134677632
Q ss_pred cCC-------CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhc---CCCceE--EecCC-
Q 012270 152 CCW-------KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAK---PGWTKF--IIGSG- 218 (467)
Q Consensus 152 ~~~-------~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~---~g~~~~--~~g~g- 218 (467)
.|. .+.++|+.||.++|++++.+++.+|++++++||+++|||+....++.++..+. .|.... ..+..
T Consensus 161 ~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (353)
T PLN02896 161 TPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVN 240 (353)
T ss_pred CcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccc
Confidence 221 24468999999999999999888899999999999999986543343333222 333211 11111
Q ss_pred --CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHH
Q 012270 219 --ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296 (467)
Q Consensus 219 --~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~ 296 (467)
...++||||+|+|++++.+++ .+.. ++.|++ +++++++.|+++.+.+.++.....+....
T Consensus 241 ~~~~~~dfi~v~Dva~a~~~~l~-----~~~~-~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~----------- 302 (353)
T PLN02896 241 SRMGSIALVHIEDICDAHIFLME-----QTKA-EGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDE----------- 302 (353)
T ss_pred cccCceeEEeHHHHHHHHHHHHh-----CCCc-CccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccc-----------
Confidence 124699999999999999997 2332 347865 55789999999999999874311111100
Q ss_pred HHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 297 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
..+ . ......|.+|++. +||+|+++++++|+++++|+++...
T Consensus 303 -----------~~~---~------~~~~~~~~~~~~~-lGw~p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 303 -----------EKR---G------SIPSEISSKKLRD-LGFEYKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred -----------ccc---C------ccccccCHHHHHH-cCCCccCCHHHHHHHHHHHHHHCCC
Confidence 000 0 0112358888875 9999999999999999999998654
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=299.44 Aligned_cols=312 Identities=18% Similarity=0.193 Sum_probs=246.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
.++||||||+||||+|.+-+|+++| +.|.++|.-.+.....-.. ...-......+.++++|++|.++|+++|+ ++
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~~~sl~r--~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~f 78 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSYLESLKR--VRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKF 78 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccchhHHHH--HHHhcCCCCceEEEEeccCCHHHHHHHHhhcCC
Confidence 5789999999999999999999999 6999999755421111000 00011124789999999999999999997 48
Q ss_pred CEEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 86 STVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 86 D~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
|+|+|+|+ ...+..+|..+++.|+.||.+|+++|++++++.+||.||+.|||. ....|++|+.|.. .|.++|+.
T Consensus 79 d~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~--p~~ip~te~~~t~-~p~~pyg~ 155 (343)
T KOG1371|consen 79 DAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGL--PTKVPITEEDPTD-QPTNPYGK 155 (343)
T ss_pred ceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecC--cceeeccCcCCCC-CCCCcchh
Confidence 99999999 445778899999999999999999999999999999999999954 4457999999643 59999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCccc--CCCC----------CcHHHHHHHhc--------CCCceEEecCCCccc
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFG--PGDT----------QLVPLLVNLAK--------PGWTKFIIGSGENMS 222 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G--~~~~----------~~~~~~~~~~~--------~g~~~~~~g~g~~~~ 222 (467)
+|...|+.+..++..+++.++.||.++++| |..+ +.+|...+.+. -|.. ....||+..+
T Consensus 156 tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d-~~t~dgt~vr 234 (343)
T KOG1371|consen 156 TKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRD-YTTIDGTIVR 234 (343)
T ss_pred hhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCc-ccccCCCeee
Confidence 999999999999998999999999999999 4321 13332222221 1222 2233668899
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHh
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~ 302 (467)
++||+-|+|..++.+++.+. ....-++||++++...++.+++.+++++.|.+.+..-+|..
T Consensus 235 dyi~v~Dla~~h~~al~k~~---~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R---------------- 295 (343)
T KOG1371|consen 235 DYIHVLDLADGHVAALGKLR---GAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRR---------------- 295 (343)
T ss_pred cceeeEehHHHHHHHhhccc---cchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCC----------------
Confidence 99999999999999998642 21233499999999999999999999999998765444321
Q ss_pred cccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 303 ~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
..+. .....+.+++.++|||+|.+.+++++++++.|..++...
T Consensus 296 ---~gdv------------~~~ya~~~~a~~elgwk~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 296 ---NGDV------------AFVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred ---CCCc------------eeeeeChHHHHHHhCCccccCHHHHHHHHHHHHhcCCCc
Confidence 0011 135679999999999999999999999999999987654
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=314.41 Aligned_cols=318 Identities=17% Similarity=0.200 Sum_probs=229.4
Q ss_pred CCCCEEEEE----cCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 6 AIPRTCVVL----NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 6 ~~~~~ilVt----GatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
.++|+|||| |||||||++|+++|+++| ++|++++|+.................+...+++++.+|+.|.+.+. .
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~-~ 127 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV-A 127 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh-c
Confidence 456899999 999999999999999999 5999999986521100000000000112346899999998733222 1
Q ss_pred HhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
..++|+|||+++. +..++.+++++|++.|++||||+||.++|++.. ..+..|+.+ ..|.+
T Consensus 128 ~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~--~~p~~E~~~--~~p~~--- 187 (378)
T PLN00016 128 GAGFDVVYDNNGK-------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSD--EPPHVEGDA--VKPKA--- 187 (378)
T ss_pred cCCccEEEeCCCC-------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCC--CCCCCCCCc--CCCcc---
Confidence 2479999999752 245788999999999999999999999996432 234566553 23322
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~ 240 (467)
+|..+|+++++ .+++++++||+++|||+... +...++..+..++++.+++++++.++|+|++|+|++++.+++
T Consensus 188 -sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~- 261 (378)
T PLN00016 188 -GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVG- 261 (378)
T ss_pred -hHHHHHHHHHH----cCCCeEEEeceeEECCCCCCchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhc-
Confidence 89999998875 68999999999999997653 445677778888888888999999999999999999999997
Q ss_pred hccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHh
Q 012270 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLA 320 (467)
Q Consensus 241 ~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (467)
.+...+++||+++++.+|+.|+++.+.+.+|.+...+..+.... . .+.. ...| +.
T Consensus 262 ----~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~-------~-----~~~~-~~~p-~~------- 316 (378)
T PLN00016 262 ----NPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAV-------G-----FGAK-KAFP-FR------- 316 (378)
T ss_pred ----CccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCcccc-------C-----cccc-cccc-cc-------
Confidence 34456789999999999999999999999998764433332211 0 0000 0011 11
Q ss_pred ccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhcccccccccccccchhhhhc
Q 012270 321 SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRDFNEQSKVEKLL 379 (467)
Q Consensus 321 ~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ll 379 (467)
......|.+|++++|||+|+++++|+|+++++|++.+...... .++..+.++.+-+
T Consensus 317 ~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 372 (378)
T PLN00016 317 DQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRDRKE---ADFETDDKILEKL 372 (378)
T ss_pred ccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCccc---cCccccHHHHHHh
Confidence 1123469999999999999999999999999999987644222 2444444444333
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=302.54 Aligned_cols=303 Identities=14% Similarity=0.132 Sum_probs=229.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|+|||||||||++++++|+++| ++|++++|+.+.. ......+++++.+|++|++++.++++++|+|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~-----------~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~V 68 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKA-----------SFLKEWGAELVYGDLSLPETLPPSFKGVTAI 68 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHh-----------hhHhhcCCEEEECCCCCHHHHHHHHCCCCEE
Confidence 589999999999999999999999 5999999976411 1112347899999999999999999999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
||+++.. ..++...+++|+.++.|++++|+++|++||||+||..+.. .+..+|..+|..+|
T Consensus 69 i~~~~~~--~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~-----------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 69 IDASTSR--PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ-----------------YPYIPLMKLKSDIE 129 (317)
T ss_pred EECCCCC--CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc-----------------cCCChHHHHHHHHH
Confidence 9998643 2345567889999999999999999999999999964320 12356889999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccC
Q 012270 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (467)
Q Consensus 169 ~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~ 248 (467)
+++++ .+++++++||+.+|+.. +..+...+..+.++.+ +.+++.++|||++|+|++++.+++ .+..
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~-----~~~~ 195 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL----ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSLS-----LPET 195 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh----hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHhc-----Cccc
Confidence 99876 68999999999888642 2222222334455444 345677899999999999999987 3555
Q ss_pred CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeeh
Q 012270 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDC 328 (467)
Q Consensus 249 ~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~ 328 (467)
.|++||+++++.+|+.|+++.+.+.+|.+.....+|.+..+..+.+..++..... ....+....+..+.....++.
T Consensus 196 ~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 271 (317)
T CHL00194 196 KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWN----ISDRLAFVEILNTSNNFSSSM 271 (317)
T ss_pred cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchh----hHHHHHHHHHHhcCCCcCCCH
Confidence 7889999999999999999999999999888888999888777665543311000 001111112222333445578
Q ss_pred hhHhhhCCCccc--cChHHHHHHHHHHHHHhhhc
Q 012270 329 IAAQKHIGYSPV--VSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 329 ~k~~~~lG~~p~--~~l~e~i~~~i~~~~~~~~~ 360 (467)
+++.+.+|+.|. .++++++++.+.-...+.++
T Consensus 272 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 305 (317)
T CHL00194 272 AELYKIFKIDPNELISLEDYFQEYFERILKRLKD 305 (317)
T ss_pred HHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 899999999983 58999999988877665443
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=297.72 Aligned_cols=279 Identities=19% Similarity=0.208 Sum_probs=219.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC--CE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA--ST 87 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--D~ 87 (467)
+|||||||||||++++++|+++| ++|++++|. .+|+.|.+++.+++++. |+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r~--------------------------~~d~~~~~~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTSS--------------------------QLDLTDPEALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCCc--------------------------ccCCCCHHHHHHHHHhCCCCE
Confidence 58999999999999999999999 599998873 36999999999999875 99
Q ss_pred EEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
|||+|+... ...++...+++|+.++.+++++|++.+. |+||+||.++|+.. ...+.+|++ +.+|.+.|+.+|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~--~~~~~~E~~--~~~~~~~Y~~~K 128 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGE--GKRPYREDD--ATNPLNVYGQSK 128 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCC--CCCCCCCCC--CCCCcchhhHHH
Confidence 999999432 2245677899999999999999999886 89999999999542 334678887 457788999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCC-CCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGD-TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~-~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
..+|+.++.+ +.+++++||+.+|||++ ..++..++..+..++++.+.++ ++++++|++|+|+++..+++
T Consensus 129 ~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~~---- 198 (287)
T TIGR01214 129 LAGEQAIRAA----GPNALIVRTSWLYGGGGGRNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQ---- 198 (287)
T ss_pred HHHHHHHHHh----CCCeEEEEeeecccCCCCCCHHHHHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHHh----
Confidence 9999999885 57999999999999986 3556677777777776666653 67899999999999999997
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (467)
.+...+++||+++++.+|+.|+++.+.+.+|.+...+..|... ... . ... ..+... ...
T Consensus 199 -~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--~~~---~---~~~-----~~~~~~-------~~~ 257 (287)
T TIGR01214 199 -RLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVK--PIS---S---KEY-----PRPARR-------PAY 257 (287)
T ss_pred -hccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeE--eec---H---HHc-----CCCCCC-------CCc
Confidence 2334567999999999999999999999999875432222100 000 0 000 111000 123
Q ss_pred eEeehhhHhhhCCCccccChHHHHHHHHH
Q 012270 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (467)
Q Consensus 324 ~~~d~~k~~~~lG~~p~~~l~e~i~~~i~ 352 (467)
..+|++|+++++||++ +++++++.++++
T Consensus 258 ~~~d~~~~~~~lg~~~-~~~~~~l~~~~~ 285 (287)
T TIGR01214 258 SVLDNTKLVKTLGTPL-PHWREALRAYLQ 285 (287)
T ss_pred cccchHHHHHHcCCCC-ccHHHHHHHHHh
Confidence 5689999999999966 599999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=299.38 Aligned_cols=303 Identities=20% Similarity=0.210 Sum_probs=230.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCCE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAST 87 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~ 87 (467)
+||||||+|+||++++++|+++| ++|++++|....... . ........+++.+.+|+.|.+++.++++ ++|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGSPE---A---LKRGERITRVTFVEGDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccchh---h---hhhhccccceEEEECCCCCHHHHHHHHHhCCCcE
Confidence 58999999999999999999999 589988764331110 0 1111111257788999999999999887 5999
Q ss_pred EEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 88 VFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 88 Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
|||+|+.. ....++...++.|+.++.+++++|++.+++++|++||.++|+.. ...+.+|+. +..|.+.|+.+|
T Consensus 74 vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~--~~~~~~e~~--~~~~~~~y~~sK 149 (328)
T TIGR01179 74 VIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEP--SSIPISEDS--PLGPINPYGRSK 149 (328)
T ss_pred EEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCC--CCCCccccC--CCCCCCchHHHH
Confidence 99999943 23345667889999999999999999999999999999999633 233677877 446788999999
Q ss_pred HHHHHHHHhhcCC-CCceEEEEeCCCcccCCCC-----------CcHHHHHHHhc-CCCceEEec------CCCcccccc
Q 012270 165 AQAEALVLFANNI-DGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAK-PGWTKFIIG------SGENMSDFT 225 (467)
Q Consensus 165 ~~~E~~v~~~~~~-~g~~~~ilRp~~i~G~~~~-----------~~~~~~~~~~~-~g~~~~~~g------~g~~~~~~i 225 (467)
..+|++++.++.+ .+++++++||+.+|||... .+++.+..... ....+..+| +++..++||
T Consensus 150 ~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 229 (328)
T TIGR01179 150 LMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYI 229 (328)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeee
Confidence 9999999998766 7899999999999998642 13344444333 233333333 567789999
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhccc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~ 305 (467)
|++|+|+++..+++... ....+++||+++++++|+.|+++.+.+.+|.+.+....|.+.
T Consensus 230 ~~~D~a~~~~~~~~~~~---~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~------------------ 288 (328)
T TIGR01179 230 HVMDLADAHLAALEYLL---NGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRP------------------ 288 (328)
T ss_pred eHHHHHHHHHHHHhhhh---cCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCC------------------
Confidence 99999999999987421 124567999999999999999999999999875433222110
Q ss_pred ccCCCCchHHHHHHhccceEeehhhHhhhCCCccccC-hHHHHHHHHHHHHHh
Q 012270 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHL 357 (467)
Q Consensus 306 ~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~-l~e~i~~~i~~~~~~ 357 (467)
..+ .....|++|++++|||+|+++ ++++++++++|++++
T Consensus 289 --~~~-----------~~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 289 --GDP-----------ASLVADASKIRRELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred --ccc-----------cchhcchHHHHHHhCCCCCcchHHHHHHHHHHHHhcC
Confidence 000 123468999999999999987 999999999999763
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=293.83 Aligned_cols=279 Identities=22% Similarity=0.274 Sum_probs=206.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
||||||||+|+||++|+++|.++| ++|..++|. ..|++|.+++.+.++. +|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~--------------------------~~dl~d~~~~~~~~~~~~pd 53 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSRS--------------------------DLDLTDPEAVAKLLEAFKPD 53 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT--------------------------CS-TTSHHHHHHHHHHH--S
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch--------------------------hcCCCCHHHHHHHHHHhCCC
Confidence 799999999999999999999998 589988764 3599999999999874 89
Q ss_pred EEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+||||||.. .++.+++..+++|+.++.+|+++|++.|+ ++||+||..||.+. ...+.+|++ +++|.+.||++
T Consensus 54 ~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~--~~~~y~E~d--~~~P~~~YG~~ 128 (286)
T PF04321_consen 54 VVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGD--KGGPYTEDD--PPNPLNVYGRS 128 (286)
T ss_dssp EEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SS--TSSSB-TTS------SSHHHHH
T ss_pred eEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCC--cccccccCC--CCCCCCHHHHH
Confidence 999999843 35678999999999999999999999998 89999999999432 334678887 56899999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|.++|+.+++.+. +.+|+|++.+||+....++..++..+.+++.+.+.. +..++++|++|+|+++..++++...
T Consensus 129 K~~~E~~v~~~~~----~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 129 KLEGEQAVRAACP----NALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHHHHHHH-S----SEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CEEEEecceecccCCCchhhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhccc
Confidence 9999999999643 799999999999977788899999999999877765 5688999999999999999985322
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCC-ccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~-~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 322 (467)
+ ....++||+++++.+|+.|+++.+++.+|.+... ..++..- ...+... ..
T Consensus 203 ~--~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~-------------------~~~~~~r-------p~ 254 (286)
T PF04321_consen 203 G--ASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSE-------------------FPRAAPR-------PR 254 (286)
T ss_dssp ---GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTT-------------------STTSSGS--------S
T ss_pred c--cccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEeccccc-------------------CCCCCCC-------CC
Confidence 1 1224599999999999999999999999988732 2222110 0111111 13
Q ss_pred ceEeehhhHhhhCCCccccChHHHHHHHHHHH
Q 012270 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~ 354 (467)
+..+|++|+++.+|++++ +|+++++++++.|
T Consensus 255 ~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 255 NTSLDCRKLKNLLGIKPP-PWREGLEELVKQY 285 (286)
T ss_dssp BE-B--HHHHHCTTS----BHHHHHHHHHHHH
T ss_pred cccccHHHHHHccCCCCc-CHHHHHHHHHHHh
Confidence 567899999999999996 9999999998765
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=300.83 Aligned_cols=298 Identities=20% Similarity=0.162 Sum_probs=214.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc----CCCCCeEEEEecCCCHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS----LSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
.++|+||||||+||||++++++|+++| ++|+++.|+....... .. +... ....++.++.+|++|.+++.++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r~~~~~~~l-~~---l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 125 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVDTQEDKEKL-RE---MEMFGEMGRSNDGIWTVMANLTEPESLHEA 125 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-HH---HhhhccccccCCceEEEEcCCCCHHHHHHH
Confidence 357899999999999999999999999 5999887764310000 00 0000 0013578899999999999999
Q ss_pred HhCCCEEEEcccCCCCC---CChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCc--cccccCCC-C-CCCCCCCccc-
Q 012270 82 LEGASTVFYVDATDLNT---DDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTA--DVVFDGSH-D-IHNGDETLTC- 152 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~~~---~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~--~vyg~~~~-~-~~~~~E~~p~- 152 (467)
++++|+|||+|+..... ..+....++|+.++.+++++|++. +++|+||+||. .+||.... . ...++|+.+.
T Consensus 126 i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~ 205 (367)
T PLN02686 126 FDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSD 205 (367)
T ss_pred HHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCC
Confidence 99999999999943221 123456788999999999999986 79999999996 47754211 1 1245665432
Q ss_pred ---CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 153 ---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 153 ---~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
+..|.++|+.+|..+|++++.+++.+|++++++||+++|||++....+..+..+..|. ..++|++ .++|+||+|
T Consensus 206 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~-~~~~g~g--~~~~v~V~D 282 (367)
T PLN02686 206 ESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKGA-QEMLADG--LLATADVER 282 (367)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHHHhcCC-CccCCCC--CcCeEEHHH
Confidence 3456678999999999999998887899999999999999986432222222333444 3455655 357999999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCC
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (467)
+|++++++++.+. +...++.| +++++++++.|+++.+.+.+|.+......|.. .
T Consensus 283 va~A~~~al~~~~---~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------------~- 336 (367)
T PLN02686 283 LAEAHVCVYEAMG---NKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSS---------------------S- 336 (367)
T ss_pred HHHHHHHHHhccC---CCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchh---------------------h-
Confidence 9999999998320 22345688 88889999999999999999876543322210 0
Q ss_pred CCchHHHHHHhccceEeehhhHhhhCCCccccChHH
Q 012270 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEE 345 (467)
Q Consensus 310 p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e 345 (467)
+ .. ...+..|.+|++++|||+|+...++
T Consensus 337 ~-~d-------~~~~~~d~~kl~~~l~~~~~~~~~~ 364 (367)
T PLN02686 337 D-DT-------PARFELSNKKLSRLMSRTRRCCYDE 364 (367)
T ss_pred c-CC-------cccccccHHHHHHHHHHhhhccccc
Confidence 0 00 1235679999999999999765543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=316.96 Aligned_cols=331 Identities=20% Similarity=0.115 Sum_probs=243.6
Q ss_pred CEEEEEcCCChhHHHHHHHHH--hcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH------HHHHH
Q 012270 9 RTCVVLNGRGFVGRSLVLRLL--ELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI------SQIKK 80 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll--~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~------~~l~~ 80 (467)
|+|||||||||||++|+++|+ ++| ++|++++|....... .. +.......+++++.+|++|+ +.+.+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~~~~~--~~---~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~ 74 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQSLSRL--EA---LAAYWGADRVVPLVGDLTEPGLGLSEADIAE 74 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcchHHHH--HH---HHHhcCCCcEEEEecccCCccCCcCHHHHHH
Confidence 589999999999999999999 578 599999996431100 00 00001125789999999984 44555
Q ss_pred HHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCc-ccCCCCCCh
Q 012270 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL-TCCWKFQDL 159 (467)
Q Consensus 81 ~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~-p~~~~~~~~ 159 (467)
+ +++|+|||+|+......++....++|+.++.+++++|++.+++++||+||.++||.... +.+|+. +.+..+.+.
T Consensus 75 l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~---~~~e~~~~~~~~~~~~ 150 (657)
T PRK07201 75 L-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG---VFREDDFDEGQGLPTP 150 (657)
T ss_pred h-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC---ccccccchhhcCCCCc
Confidence 5 88999999999655555677788999999999999999999999999999999964322 334443 223445678
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcC-CCceEEecCCCccccccchhH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKP-GWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~---------~~~~~~~~~~-g~~~~~~g~g~~~~~~i~v~D 229 (467)
|+.+|..+|+++++. .|++++++||+.+|||...+. +..++..... ......++++....+++|++|
T Consensus 151 Y~~sK~~~E~~~~~~---~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdd 227 (657)
T PRK07201 151 YHRTKFEAEKLVREE---CGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDY 227 (657)
T ss_pred hHHHHHHHHHHHHHc---CCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHH
Confidence 999999999999863 689999999999999865321 1112222211 122234556667789999999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCC---CCccCChHHHHHHHHHHHHHHHHhcccc
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR---PFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~---~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
+|+++..+++ .+...|++||+++++++++.|+++.+.+.+|.+. +...+|.++......+.......... -
T Consensus 228 va~ai~~~~~-----~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~ 301 (657)
T PRK07201 228 VADALDHLMH-----KDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNA-V 301 (657)
T ss_pred HHHHHHHHhc-----CcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHH-H
Confidence 9999999887 3556788999999999999999999999999987 77789988877766532111111000 0
Q ss_pred cCCCCchHHHHHHhccceEeehhhHhhhC---CCccccChHHHHHHHHHHHHHhhh
Q 012270 307 YNHSLSACYIVQLASRTRTFDCIAAQKHI---GYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 307 ~~~p~~~~~~~~~~~~~~~~d~~k~~~~l---G~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
...+.+.+..+..+.....+|++|+++.| |+.+. ++++++...++|+.++..
T Consensus 302 ~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~ 356 (657)
T PRK07201 302 ATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLD 356 (657)
T ss_pred HHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCC
Confidence 02233456777778888899999999988 66664 789999999998877643
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=289.57 Aligned_cols=274 Identities=18% Similarity=0.213 Sum_probs=212.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|+||||||+||||++++++|+++|. ++|++++|+...... +.......+++++.+|++|++++.++++++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~-------~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i 75 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWE-------MQQKFPAPCLRFFIGDVRDKERLTRALRGV 75 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHH-------HHHHhCCCcEEEEEccCCCHHHHHHHHhcC
Confidence 468999999999999999999999862 489999886541100 011111246889999999999999999999
Q ss_pred CEEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
|+|||+||.. ....++...+++|+.|+.+++++|++.+++++||+||... ..|.++|+.
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~------------------~~p~~~Y~~ 137 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA------------------ANPINLYGA 137 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC------------------CCCCCHHHH
Confidence 9999999942 2345677899999999999999999999999999999632 245678999
Q ss_pred HHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC-ceEEecCCCccccccchhHHHHHHHHHH
Q 012270 163 LKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAHAHVCAA 238 (467)
Q Consensus 163 sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~Dva~a~~~al 238 (467)
+|..+|++++.++ ...|++++++||+++|||+. .+++.+...+..+. ++.+ +++++.++|+||+|+|++++.++
T Consensus 138 sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-~~i~~~~~~~~~~~~~~~i-~~~~~~r~~i~v~D~a~a~~~al 215 (324)
T TIGR03589 138 TKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPI-TDPRMTRFWITLEQGVNFVLKSL 215 (324)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC-CcHHHHHHHHHhCCCCeee-CCCCceEeeEEHHHHHHHHHHHH
Confidence 9999999997743 45799999999999999975 46787777777775 3444 46788899999999999999999
Q ss_pred HHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHH
Q 012270 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (467)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 318 (467)
++ ...+++| ++++..+++.|+++.+.+..+.+. .+ ..+...+
T Consensus 216 ~~------~~~~~~~-~~~~~~~sv~el~~~i~~~~~~~~----~~-----------------------~~~g~~~---- 257 (324)
T TIGR03589 216 ER------MLGGEIF-VPKIPSMKITDLAEAMAPECPHKI----VG-----------------------IRPGEKL---- 257 (324)
T ss_pred hh------CCCCCEE-ccCCCcEEHHHHHHHHHhhCCeeE----eC-----------------------CCCCchh----
Confidence 83 2346778 566678999999999998653321 11 0010000
Q ss_pred HhccceEeehhhHhhhCCCccccChHHHHH
Q 012270 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348 (467)
Q Consensus 319 ~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~ 348 (467)
.....|.+|+++++||+|+++++++++
T Consensus 258 ---~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 258 ---HEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred ---HhhhcChhhhhhhcCCCCeEEEccccc
Confidence 113369999999999999999999986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=266.26 Aligned_cols=273 Identities=22% Similarity=0.235 Sum_probs=225.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+|||||++|++|++|++.|. .+ ++|+.++|.. .|++|++.+.++++ ++|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~-~~v~a~~~~~--------------------------~Ditd~~~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE-FEVIATDRAE--------------------------LDITDPDAVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC-ceEEeccCcc--------------------------ccccChHHHHHHHHhhCCC
Confidence 459999999999999999998 44 6899887743 69999999999998 479
Q ss_pred EEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|+ ++.++.+++..+.+|..|+.|++++|++.|. ++||+||..|| ......++.|++ +++|.+.||.|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVF--DG~~~~~Y~E~D--~~~P~nvYG~s 127 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVF--DGEKGGPYKETD--TPNPLNVYGRS 127 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEe--cCCCCCCCCCCC--CCCChhhhhHH
Confidence 9999999 4567788999999999999999999999998 79999999998 222334788887 67899999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|.++|+.+++++ -+.+|+|.+++||...++++..+++.+..|+++.+.. ++..+.+++.|+|+++..+++
T Consensus 128 Kl~GE~~v~~~~----~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~---- 197 (281)
T COG1091 128 KLAGEEAVRAAG----PRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLE---- 197 (281)
T ss_pred HHHHHHHHHHhC----CCEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHh----
Confidence 999999999965 4789999999999988889999999999999877765 588899999999999999987
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCcc-CChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-LPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~-ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 322 (467)
....+++||+++...+||.||++.|.+..+.+...+. ++.. .+..+.-.| .
T Consensus 198 --~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~-------------------~~~~~a~RP-------~ 249 (281)
T COG1091 198 --KEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASA-------------------EYPTPAKRP-------A 249 (281)
T ss_pred --ccccCcEEEEeCCCcccHHHHHHHHHHHhCCCcccccccccc-------------------ccCccCCCC-------c
Confidence 3344459999999899999999999999986542221 1100 001111111 2
Q ss_pred ceEeehhhHhhhCCCccccChHHHHHHHHHH
Q 012270 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQS 353 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~ 353 (467)
...+|+.|+.+.+|++|+ +|+++++++++.
T Consensus 250 ~S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 250 NSSLDTKKLEKAFGLSLP-EWREALKALLDE 279 (281)
T ss_pred ccccchHHHHHHhCCCCc-cHHHHHHHHHhh
Confidence 346899999999999996 999999998764
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=275.70 Aligned_cols=226 Identities=31% Similarity=0.356 Sum_probs=194.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC--CEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA--STV 88 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--D~V 88 (467)
|||||||||||++++++|+++|+ +|+.+.|+....... ....+++++.+|+.|.+.+.+++++. |+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~----------~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-EVIVLSRSSNSESFE----------EKKLNVEFVIGDLTDKEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-EEEEEESCSTGGHHH----------HHHTTEEEEESETTSHHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-ccccccccccccccc----------cccceEEEEEeeccccccccccccccCceEE
Confidence 79999999999999999999995 888888876521100 00127899999999999999999865 999
Q ss_pred EEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 012270 89 FYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (467)
Q Consensus 89 ih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~ 165 (467)
||+|+... ...++...++.|+.++.+++++|++.+++|+||+||..+|+.. ...+.+|+.+ ..|.++|+.+|.
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~--~~~~~~e~~~--~~~~~~Y~~~K~ 145 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDP--DGEPIDEDSP--INPLSPYGASKR 145 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSS--SSSSBETTSG--CCHSSHHHHHHH
T ss_pred EEeecccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc--cccccccccccc
Confidence 99999542 2356788999999999999999999999999999999999655 4456788874 388899999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCC-----CCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHH
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPG-----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~-----~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~ 240 (467)
.+|++++.+.++++++++++||+.+|||. ...+++.++..+..|+++.++++++++++|+|++|+|++++.++++
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 225 (236)
T PF01370_consen 146 AAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALEN 225 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhC
Confidence 99999999988789999999999999999 2357889999999999999999999999999999999999999994
Q ss_pred hccccccCCCcEEEEc
Q 012270 241 LDSRMVSVAGMAFFIT 256 (467)
Q Consensus 241 ~~~~~~~~~g~~yni~ 256 (467)
+...+++|||+
T Consensus 226 -----~~~~~~~yNig 236 (236)
T PF01370_consen 226 -----PKAAGGIYNIG 236 (236)
T ss_dssp -----SCTTTEEEEES
T ss_pred -----CCCCCCEEEeC
Confidence 44578899986
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=278.86 Aligned_cols=261 Identities=19% Similarity=0.147 Sum_probs=208.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+|+|||||||||++++++|+++| ++|++++|+.......... .......++++++.+|++|++++.++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~---~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGK---EDTKKELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchh---hHHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence 357899999999999999999999999 5999999976421100000 0000113578999999999999999988
Q ss_pred --CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
++|+|||+++.... .....+++|..++.+++++|++.|++|||++||.++| .|...|.
T Consensus 134 ~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~------------------~p~~~~~ 193 (390)
T PLN02657 134 GDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQ------------------KPLLEFQ 193 (390)
T ss_pred CCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecccc------------------CcchHHH
Confidence 59999999884321 1234568899999999999999999999999998775 1345688
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc-cccchhHHHHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~-~~i~v~Dva~a~~~al~~ 240 (467)
.+|...|+.++. ...+++++++||+.+||+. ..++..+..|+++.++|+|+..+ ++||++|+|++++.+++
T Consensus 194 ~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-----~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~- 265 (390)
T PLN02657 194 RAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-----GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVL- 265 (390)
T ss_pred HHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-----HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHh-
Confidence 999999999876 2378999999999999752 33456677888888889987654 68999999999999987
Q ss_pred hccccccCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHh
Q 012270 241 LDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302 (467)
Q Consensus 241 ~~~~~~~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~ 302 (467)
.+...+++||++++ +.+|+.|+++.+.+.+|.+.....+|.+.+.....+.+.+..++
T Consensus 266 ----~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~~~~~~~~~~~~~~~~~ 324 (390)
T PLN02657 266 ----DESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQIMDFAIGVLDFLAKIF 324 (390)
T ss_pred ----CccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHHHHHHHHHHHHHhhhhC
Confidence 35566789999997 68999999999999999988888999999888777776665544
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=295.94 Aligned_cols=259 Identities=17% Similarity=0.193 Sum_probs=199.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|+||||+||||++++++|+++| ++|++++|..... ...+++++.+|++|.+++.++++++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R~~~~~--------------~~~~v~~v~gDL~D~~~l~~al~~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIARHRPDS--------------WPSSADFIAADIRDATAVESAMTGADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCchhh--------------cccCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 589999999999999999999999 4999999864310 0125788999999999999999999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
||+|+.... .+++|+.++.+++++|++.+++|+||+||.+ |..+|
T Consensus 66 VHlAa~~~~------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-----------------------------K~aaE 110 (854)
T PRK05865 66 AHCAWVRGR------NDHINIDGTANVLKAMAETGTGRIVFTSSGH-----------------------------QPRVE 110 (854)
T ss_pred EECCCcccc------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-----------------------------HHHHH
Confidence 999984321 5689999999999999999999999999952 88899
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccC
Q 012270 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (467)
Q Consensus 169 ~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~ 248 (467)
+++++ ++++++++||+++|||+.. .++..+.. .++...|++++.++|||++|+|++++.+++ .+..
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~~----~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~-----~~~~ 176 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNVD----NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALL-----DTVI 176 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCChH----HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHh-----CCCc
Confidence 98865 6899999999999999732 23333322 223334555667899999999999999986 2334
Q ss_pred CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeeh
Q 012270 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDC 328 (467)
Q Consensus 249 ~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~ 328 (467)
.+++||+++++.+|+.|+++.+.+... .++..... ..+ . ............+|+
T Consensus 177 ~ggvyNIgsg~~~Si~EIae~l~~~~~------~v~~~~~~-----------~~~----~-----~~~~~~~~~~~~~D~ 230 (854)
T PRK05865 177 DSGPVNLAAPGELTFRRIAAALGRPMV------PIGSPVLR-----------RVT----S-----FAELELLHSAPLMDV 230 (854)
T ss_pred CCCeEEEECCCcccHHHHHHHHhhhhc------cCCchhhh-----------hcc----c-----hhhhhcccCCccCCH
Confidence 567999999999999999998876431 11111100 000 0 000111112345799
Q ss_pred hhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 329 IAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 329 ~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
+|++++|||+|+++++++++++++|++.+
T Consensus 231 sKar~~LGw~P~~sLeeGL~dti~~~r~r 259 (854)
T PRK05865 231 TLLRDRWGFQPAWNAEECLEDFTLAVRGR 259 (854)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999884
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=285.94 Aligned_cols=269 Identities=17% Similarity=0.140 Sum_probs=200.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCC-CC-----C-------CC---cCCCCCeEEE
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESN-SL-----L-------PD---SLSSGRAEYH 68 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~-~~-----~-------~~---~~~~~~v~~~ 68 (467)
.+++|||||||||||++|++.|++.+. .+|+++.|.........+-. .. + .+ .....+++++
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 568999999999999999999998753 26899999765221111100 00 0 00 0112679999
Q ss_pred EecCC-------CHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCC
Q 012270 69 QVDVR-------DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGS 140 (467)
Q Consensus 69 ~~Dl~-------d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~ 140 (467)
.||++ |.+.+..+++++|+|||+||......++....++|+.||.+++++|+++ +++++||+||++|||...
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~~~ 169 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKS 169 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecCCC
Confidence 99998 5555778888999999999966666778889999999999999999987 789999999999997532
Q ss_pred CC--CCCCC--CC---------------------------c---------------c-cCCCCCChHHHHHHHHHHHHHh
Q 012270 141 HD--IHNGD--ET---------------------------L---------------T-CCWKFQDLMCDLKAQAEALVLF 173 (467)
Q Consensus 141 ~~--~~~~~--E~---------------------------~---------------p-~~~~~~~~Y~~sK~~~E~~v~~ 173 (467)
.. ..+.+ ++ . | ....+++.|+.||+++|+++++
T Consensus 170 ~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv~~ 249 (491)
T PLN02996 170 GLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGN 249 (491)
T ss_pred ceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHHHHH
Confidence 10 00111 00 0 0 0123457899999999999998
Q ss_pred hcCCCCceEEEEeCCCcccCCCCC---c------HHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccc
Q 012270 174 ANNIDGLLTCALRPSNVFGPGDTQ---L------VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (467)
Q Consensus 174 ~~~~~g~~~~ilRp~~i~G~~~~~---~------~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~ 244 (467)
++. +++++++||++||||+..+ . ...++..+..|....++|+|++.+|+|||+|+|++++.++.+..
T Consensus 250 ~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~-- 325 (491)
T PLN02996 250 FKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHA-- 325 (491)
T ss_pred hcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHhh--
Confidence 853 7999999999999997653 1 12344445677777889999999999999999999999987310
Q ss_pred cccCCCcEEEEcCC--CCcCHHHHHHHHHHHcCCCCC
Q 012270 245 MVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRP 279 (467)
Q Consensus 245 ~~~~~g~~yni~~~--~~~s~~el~~~i~~~~g~~~~ 279 (467)
.....+++||++++ +++|+.|+++.+.+..+..+.
T Consensus 326 ~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~ 362 (491)
T PLN02996 326 GGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPW 362 (491)
T ss_pred ccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCC
Confidence 01124679999998 899999999999998876543
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=243.66 Aligned_cols=288 Identities=17% Similarity=0.184 Sum_probs=229.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
+|+||||||+|.+|+++++.+.+.|.. +=.++..+ -.+|+++.++.+++++ +
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s-------------------------kd~DLt~~a~t~~lF~~ek 55 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS-------------------------KDADLTNLADTRALFESEK 55 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc-------------------------ccccccchHHHHHHHhccC
Confidence 579999999999999999999998741 21221111 1479999999999987 4
Q ss_pred CCEEEEcccCC----CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc--CCCC-C
Q 012270 85 ASTVFYVDATD----LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKF-Q 157 (467)
Q Consensus 85 ~D~Vih~aa~~----~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~--~~~~-~ 157 (467)
+.+|||+|+.. .....+...+..|++-..|++..|-+.|+++++++.|.++| .+....|++|++-+ |+.| +
T Consensus 56 PthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIf--Pdkt~yPIdEtmvh~gpphpsN 133 (315)
T KOG1431|consen 56 PTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIF--PDKTSYPIDETMVHNGPPHPSN 133 (315)
T ss_pred CceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeec--CCCCCCCCCHHHhccCCCCCCc
Confidence 89999999932 34456778899999999999999999999999999999999 66666799998744 3333 3
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHh----cCCC-ceEEecCCCccccccc
Q 012270 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLA----KPGW-TKFIIGSGENMSDFTY 226 (467)
Q Consensus 158 ~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~----~~g~-~~~~~g~g~~~~~~i~ 226 (467)
..|+..|.++.-.-+.|..++|..++.+-|+++|||+++ ..+|.++.++ .+|. .+.++|+|.+.|+|+|
T Consensus 134 ~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiy 213 (315)
T KOG1431|consen 134 FGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIY 213 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhh
Confidence 479999998888889999999999999999999999986 2566665543 3554 7899999999999999
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCC--CcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcc
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~--~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 304 (467)
++|+|++++..++.. ..-+..+++.++ ++|++|.++++.++++.+-...+--
T Consensus 214 s~DLA~l~i~vlr~Y------~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~Dt-------------------- 267 (315)
T KOG1431|consen 214 SDDLADLFIWVLREY------EGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDT-------------------- 267 (315)
T ss_pred HhHHHHHHHHHHHhh------cCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeec--------------------
Confidence 999999999999843 233577888886 8999999999999998875432210
Q ss_pred cccCCCCchHHHHHHhccceEeehhhHhhhCCCccccC-hHHHHHHHHHHHHHhhhc
Q 012270 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~-l~e~i~~~i~~~~~~~~~ 360 (467)
..+.- ....++|++|++. ++|.|+.+ +++++.++++||.++...
T Consensus 268 ---tK~DG--------q~kKtasnsKL~s-l~pd~~ft~l~~ai~~t~~Wy~~Ny~q 312 (315)
T KOG1431|consen 268 ---TKSDG--------QFKKTASNSKLRS-LLPDFKFTPLEQAISETVQWYLDNYEQ 312 (315)
T ss_pred ---cCCCC--------CcccccchHHHHH-hCCCcccChHHHHHHHHHHHHHHhHHh
Confidence 11111 1124679999999 89999885 999999999999987643
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=266.29 Aligned_cols=284 Identities=17% Similarity=0.170 Sum_probs=204.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEEEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 90 (467)
||||||+||||+++++.|+++| ++|++++|++..... ..... ..|+.+ ..+.+++.++|+|||
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-----------~~~~~----~~~~~~-~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRSPPAGAN-----------TKWEG----YKPWAP-LAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCCCCCCCc-----------cccee----eecccc-cchhhhcCCCCEEEE
Confidence 6899999999999999999999 599999997752110 00001 112322 445667789999999
Q ss_pred cccCCCC-----CCChhhHHHhhHHHHHHHHHHHHhCCCC--eEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 91 VDATDLN-----TDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 91 ~aa~~~~-----~~~~~~~~~~nv~g~~~ll~aa~~~~v~--r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|+.... ..++...+++|+.++.+++++|++.+++ ++|++||..+||.. ...+.+|+.+ ..+.+.|+..
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~--~~~~~~E~~~--~~~~~~~~~~ 139 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTS--EDRVFTEEDS--PAGDDFLAEL 139 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCC--CCCCcCcccC--CCCCChHHHH
Confidence 9994321 1234668899999999999999999874 57777877888643 2346778762 3455567777
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
+...|+.+..+. +.+++++++||+.+|||.+. ..+.+......... ..+|+++++++|||++|+|+++..+++
T Consensus 140 ~~~~e~~~~~~~-~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~i~v~Dva~~i~~~l~---- 212 (292)
T TIGR01777 140 CRDWEEAAQAAE-DLGTRVVLLRTGIVLGPKGG-ALAKMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLILFALE---- 212 (292)
T ss_pred HHHHHHHhhhch-hcCCceEEEeeeeEECCCcc-hhHHHHHHHhcCcc-cccCCCCcccccEeHHHHHHHHHHHhc----
Confidence 777787766543 36899999999999999753 34444332222111 125788899999999999999999997
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (467)
.+.. +++||+++++++|+.|+++.+.+.+|.+.+ +.+|.+...... + ..+ ..+..+
T Consensus 213 -~~~~-~g~~~~~~~~~~s~~di~~~i~~~~g~~~~-~~~p~~~~~~~~----------~----~~~-------~~~~~~ 268 (292)
T TIGR01777 213 -NASI-SGPVNATAPEPVRNKEFAKALARALHRPAF-FPVPAFVLRALL----------G----EMA-------DLLLKG 268 (292)
T ss_pred -Cccc-CCceEecCCCccCHHHHHHHHHHHhCCCCc-CcCCHHHHHHHh----------c----hhh-------HHHhCC
Confidence 3333 459999999999999999999999997653 568887643321 1 101 112345
Q ss_pred eEeehhhHhhhCCCcccc-ChHHHH
Q 012270 324 RTFDCIAAQKHIGYSPVV-SLEEGV 347 (467)
Q Consensus 324 ~~~d~~k~~~~lG~~p~~-~l~e~i 347 (467)
...+++|+++ +||+|++ +++|++
T Consensus 269 ~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 269 QRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred cccccHHHHh-cCCeeeCcChhhcC
Confidence 6789999987 9999998 588763
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=261.44 Aligned_cols=251 Identities=21% Similarity=0.156 Sum_probs=186.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+++|+||||+||||++++++|+++| ++|+++.|+...... .. .+.... ...+++++.+|++|.+++.+++.++
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R~~~~~~~-~~---~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~ 79 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQKNGETEI-EK---EIRGLSCEEERLKVFDVDPLDYHSILDALKGC 79 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEcCchhhhH-HH---HHHhcccCCCceEEEEecCCCHHHHHHHHcCC
Confidence 46789999999999999999999999 599999885421000 00 001100 1246889999999999999999999
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccC---CCCCCCCCCCcccCC----CC
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDG---SHDIHNGDETLTCCW----KF 156 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~---~~~~~~~~E~~p~~~----~~ 156 (467)
|+|+|+++... ...+++.++++|+.|+.+++++|.+. +++|+|++||.++++.+ .....+.+|+.|.+. .+
T Consensus 80 d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 159 (297)
T PLN02583 80 SGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKF 159 (297)
T ss_pred CEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhc
Confidence 99999886432 22346788999999999999999987 68999999999876422 122346778764221 12
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
...|+.||..+|++++.++++.|++++++||++||||+.....+ ...+.. ...+ ...++||||+|+|++++.
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~-----~~~~~~-~~~~--~~~~~~v~V~Dva~a~~~ 231 (297)
T PLN02583 160 KLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP-----YLKGAA-QMYE--NGVLVTVDVNFLVDAHIR 231 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh-----hhcCCc-ccCc--ccCcceEEHHHHHHHHHH
Confidence 23799999999999999887679999999999999998653222 122222 1222 234689999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCC
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGY 276 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~ 276 (467)
+++ .+...+ .|+++++....+.++++.+.+.++.
T Consensus 232 al~-----~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~p~ 265 (297)
T PLN02583 232 AFE-----DVSSYG-RYLCFNHIVNTEEDAVKLAQMLSPL 265 (297)
T ss_pred Hhc-----CcccCC-cEEEecCCCccHHHHHHHHHHhCCC
Confidence 998 344445 7888886555677899999988764
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=251.62 Aligned_cols=273 Identities=12% Similarity=0.040 Sum_probs=196.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+.|+||||||+||||++|+++|+++|+ +|+... +|+.|.+.+...++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~-----------------------------~~~~~~~~v~~~l~~~ 56 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGS-----------------------------GRLENRASLEADIDAV 56 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC-EEEEec-----------------------------CccCCHHHHHHHHHhc
Confidence 3568999999999999999999999995 876421 24556666776666
Q ss_pred CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCC-C---CCCCCCCcccC
Q 012270 84 GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH-D---IHNGDETLTCC 153 (467)
Q Consensus 84 ~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~-~---~~~~~E~~p~~ 153 (467)
++|+|||+||... +..++...+++|+.|+.+++++|++.+++ ++++||.++|+.+.. + ..+.+|+++ +
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~-p 134 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDT-P 134 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCC-C
Confidence 6899999999542 33578889999999999999999999995 566777788864321 1 224666553 3
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
..+.+.|+.+|.++|++++.++ +..++|+...+|++.. ....++..+..+..+...+ .+|+|++|++++
T Consensus 135 ~~~~s~Yg~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~~-~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~a 203 (298)
T PLN02778 135 NFTGSFYSKTKAMVEELLKNYE-----NVCTLRVRMPISSDLS-NPRNFITKITRYEKVVNIP-----NSMTILDELLPI 203 (298)
T ss_pred CCCCCchHHHHHHHHHHHHHhh-----ccEEeeecccCCcccc-cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHH
Confidence 3455899999999999999875 3568888888887533 2345677777777644433 379999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC--CccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~--~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (467)
++.+++ .+.. ++||+++++++|+.|+++.+++.+|.+.. .+.+++.- ... ..|
T Consensus 204 l~~~l~------~~~~-g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~------------~~~-----~~~- 258 (298)
T PLN02778 204 SIEMAK------RNLT-GIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQA------------KVI-----VAP- 258 (298)
T ss_pred HHHHHh------CCCC-CeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHH------------HHH-----hCC-
Confidence 999987 2333 59999999999999999999999996421 12222100 000 011
Q ss_pred chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHH
Q 012270 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (467)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~ 356 (467)
.....+|++|+++.++=.++ ..+++++...+-++.
T Consensus 259 ---------~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~~~ 293 (298)
T PLN02778 259 ---------RSNNELDTTKLKREFPELLP-IKESLIKYVFEPNKK 293 (298)
T ss_pred ---------CccccccHHHHHHhcccccc-hHHHHHHHHHHHHHh
Confidence 11235899999997765453 567777777666644
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=233.29 Aligned_cols=325 Identities=19% Similarity=0.138 Sum_probs=245.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+.||||-||+-|++|++.|++.| ++|.++.|..+...... -+-........+++.++.+|++|...+..+++.
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~~n~~r-i~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~ 78 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSSFNTPR-IHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQ 78 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcC-cEEEEEeeccccCCccc-ceeccccccCCceeEEEeccccchHHHHHHHHhcC
Confidence 46789999999999999999999999 79999999765322111 000011223345688999999999999999885
Q ss_pred CCEEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 85 ASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 85 ~D~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
+|-|+|+|| +..+.++|..+.+++..|+.+|+||.+..+. .||...||...||.. ...|.+|+. |..|.++
T Consensus 79 PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v--~~~pq~E~T--PFyPrSP 154 (345)
T COG1089 79 PDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLV--QEIPQKETT--PFYPRSP 154 (345)
T ss_pred chhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCc--ccCccccCC--CCCCCCH
Confidence 799999999 4557889999999999999999999999864 489999999999543 456889998 6699999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcH----HHHHHHhcCCC-ceEEecCCCccccccchhHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLV----PLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-~~~----~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
|+.+|..+--....|.+.+|+-.|.=+..+-=+|... .++ ..-+.+++.|. .....|+-+..+||-|+.|.+++
T Consensus 155 YAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~ 234 (345)
T COG1089 155 YAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEA 234 (345)
T ss_pred HHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHH
Confidence 9999999999999999999998886555555555432 233 23344445553 45778998999999999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCc--cCChHHHHHHHHHHHHHHHHhccc--ccCC
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLR--TYNH 309 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~--~ip~~~~~~~~~~~~~~~~~~~~~--~~~~ 309 (467)
+..++++ + ..+.|.|++++..|++|+++...+..|.+.... -+.+.-. ....|.. ..++
T Consensus 235 mwlmLQq-----~--~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~----------da~~G~~~V~idp 297 (345)
T COG1089 235 MWLMLQQ-----E--EPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGV----------DAKTGKIIVEIDP 297 (345)
T ss_pred HHHHHcc-----C--CCCceEEecCceeeHHHHHHHHHHHcCceEEEeecccccccc----------ccccCceeEEECc
Confidence 9999983 2 357999999999999999999999999653210 0000000 0000000 0133
Q ss_pred CCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 310 p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
..+.|..+..+ .-|.+|+++.|||+|+++++|.+++|+++..+..
T Consensus 298 ~~fRPaEV~~L----lgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 298 RYFRPAEVDLL----LGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred cccCchhhhhh----cCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHh
Confidence 34555554433 3589999999999999999999999999887643
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-32 Score=253.59 Aligned_cols=238 Identities=25% Similarity=0.319 Sum_probs=186.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeE----EEEecCCCHHHHHHHHh--C
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE----YHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~Dl~d~~~l~~~~~--~ 84 (467)
||||||+|.||+.|+++|++.+...++++|++........++ +......++++ .+.+|++|.+.+..+++ +
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~---l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~ 77 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE---LRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYK 77 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH---CHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH---HhhcccccCcccccCceeecccCHHHHHHHHhhcC
Confidence 799999999999999999999877999999988644333222 21112233443 45899999999999999 8
Q ss_pred CCEEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|+|||+|| ++..+.+|.+..++|+.||.|++++|.+++++|||++||..+. +|.+.||
T Consensus 78 pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv------------------~PtnvmG 139 (293)
T PF02719_consen 78 PDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAV------------------NPTNVMG 139 (293)
T ss_dssp -SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCS------------------S--SHHH
T ss_pred CCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccC------------------CCCcHHH
Confidence 999999999 4557789999999999999999999999999999999998765 6889999
Q ss_pred HHHHHHHHHHHhhcCCC---CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~---g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al 238 (467)
.||..+|+++..++... +..++++|+|+|.|.+. +++|.|.+++.+|+|+.+. +++..|-|+.+++.++.++.++
T Consensus 140 atKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G-SVip~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~a~ 217 (293)
T PF02719_consen 140 ATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG-SVIPLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQAA 217 (293)
T ss_dssp HHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT-SCHHHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC-cHHHHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHHHH
Confidence 99999999999998765 68999999999999753 5899999999999998776 4577899999999999999998
Q ss_pred HHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCC
Q 012270 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ 277 (467)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~ 277 (467)
. -...|++|..--++++++.|+++.+.+..|.+
T Consensus 218 ~------~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 218 A------LAKGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp H------H--TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred h------hCCCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 7 34568899888889999999999999999864
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=257.50 Aligned_cols=243 Identities=22% Similarity=0.272 Sum_probs=214.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
.+|+||||||+|-||+.+++++++.+..++++++|+.........+ +.......++.++.||++|.+.+..++++
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~e---l~~~~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDME---LREKFPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHH---HHhhCCCcceEEEecccccHHHHHHHHhcCC
Confidence 5789999999999999999999999878999999998754444333 22223356788999999999999999998
Q ss_pred CCEEEEccc---CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa---~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|+|||+|| ++..+.||.+.+++|+.||.|+++||.++||+++|.+||..+. +|.+.||
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV------------------~PtNvmG 387 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAV------------------NPTNVMG 387 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCccc------------------CCchHhh
Confidence 999999999 6778999999999999999999999999999999999998665 7889999
Q ss_pred HHHHHHHHHHHhhcCCC---CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~---g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al 238 (467)
.||..+|..+..++++. +..++++|+|+|.|.+. +.+|.|.+++.+|+|+++. +++-.|-|+.++|.++.++.+.
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG-SViPlFk~QI~~GgplTvT-dp~mtRyfMTI~EAv~LVlqA~ 465 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG-SVIPLFKKQIAEGGPLTVT-DPDMTRFFMTIPEAVQLVLQAG 465 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC-CCHHHHHHHHHcCCCcccc-CCCceeEEEEHHHHHHHHHHHH
Confidence 99999999999997633 38999999999999864 5899999999999998776 6788899999999999999998
Q ss_pred HHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCC
Q 012270 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (467)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~ 278 (467)
. -...|++|-+-.|+++++.|+++.+.+..|..+
T Consensus 466 a------~~~gGeifvldMGepvkI~dLAk~mi~l~g~~~ 499 (588)
T COG1086 466 A------IAKGGEIFVLDMGEPVKIIDLAKAMIELAGQTP 499 (588)
T ss_pred h------hcCCCcEEEEcCCCCeEHHHHHHHHHHHhCCCC
Confidence 7 456788998888899999999999999998543
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=230.62 Aligned_cols=286 Identities=17% Similarity=0.186 Sum_probs=212.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-CCCEEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GASTVF 89 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~D~Vi 89 (467)
|+|||||||||++|+..|.+.|| +|++++|++...... ....+. ..+.+.+..+ ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-~v~iltR~~~~~~~~-----------~~~~v~-------~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-QVTILTRRPPKASQN-----------LHPNVT-------LWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-eEEEEEcCCcchhhh-----------cCcccc-------ccchhhhcccCCCCEEE
Confidence 68999999999999999999996 999999988722111 111111 2233444455 799999
Q ss_pred EcccCCC-----CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 90 YVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 90 h~aa~~~-----~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
|+||.+- .....+.+.+.-+..|..|.++..+. +.+.+|.-|.+.-||+ .....++|++| .+.+.-+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~--~~~~~~tE~~~---~g~~Fla~ 136 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGH--SGDRVVTEESP---PGDDFLAQ 136 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecC--CCceeeecCCC---CCCChHHH
Confidence 9999332 22334678888899999999998855 5777888888888853 45567888864 34566777
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhc
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~ 242 (467)
....-|+....+.. .|.+++++|.|.|.|+... .++.+....+-|-- -..|+|.++++|||++|+++++..+++
T Consensus 137 lc~~WE~~a~~a~~-~gtRvvllRtGvVLs~~GG-aL~~m~~~fk~glG-G~~GsGrQ~~SWIhieD~v~~I~fll~--- 210 (297)
T COG1090 137 LCQDWEEEALQAQQ-LGTRVVLLRTGVVLSPDGG-ALGKMLPLFKLGLG-GKLGSGRQWFSWIHIEDLVNAILFLLE--- 210 (297)
T ss_pred HHHHHHHHHhhhhh-cCceEEEEEEEEEecCCCc-chhhhcchhhhccC-CccCCCCceeeeeeHHHHHHHHHHHHh---
Confidence 77788888877654 7899999999999998643 44544433322211 236999999999999999999999999
Q ss_pred cccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 012270 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (467)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 322 (467)
+++..| +||+++|.|++..||..++.++++++. ...+|..+++.... +....++ .
T Consensus 211 --~~~lsG-p~N~taP~PV~~~~F~~al~r~l~RP~-~~~vP~~~~rl~LG--e~a~~lL-------------------~ 265 (297)
T COG1090 211 --NEQLSG-PFNLTAPNPVRNKEFAHALGRALHRPA-ILPVPSFALRLLLG--EMADLLL-------------------G 265 (297)
T ss_pred --CcCCCC-cccccCCCcCcHHHHHHHHHHHhCCCc-cccCcHHHHHHHhh--hhHHHHh-------------------c
Confidence 567777 999999999999999999999999764 46899988766554 2222222 2
Q ss_pred ceEeehhhHhhhCCCcccc-ChHHHHHHHHH
Q 012270 323 TRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQ 352 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~-~l~e~i~~~i~ 352 (467)
..+.=..|+.+ .||++++ ++++++.+.+.
T Consensus 266 gQrvlP~kl~~-aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 266 GQRVLPKKLEA-AGFQFQYPDLEEALADILK 295 (297)
T ss_pred cchhhHHHHHH-CCCeeecCCHHHHHHHHHh
Confidence 34456678877 8999887 79999988764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=254.83 Aligned_cols=270 Identities=21% Similarity=0.183 Sum_probs=195.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCc--C---CCCCCCc-CCCCCeEEEEecCCCH------H
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSE--S---NSLLPDS-LSSGRAEYHQVDVRDI------S 76 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~--~---~~~~~~~-~~~~~v~~~~~Dl~d~------~ 76 (467)
+|+|||||||||++|+++|+++|+ ++|+++.|..+......+ + ...+... ...++++++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 589999999999999999999985 379999997642100000 0 0000000 0015799999999754 4
Q ss_pred HHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc---C
Q 012270 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC---C 153 (467)
Q Consensus 77 ~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~---~ 153 (467)
.+..+.+++|+|||+|+............++|+.++.+++++|.+.++++++|+||.++|+..... +..|+.+. .
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~--~~~~~~~~~~~~ 158 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLS--TVTEDDAIVTPP 158 (367)
T ss_pred HHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCC--Cccccccccccc
Confidence 567777889999999996655556677888999999999999999999999999999999653321 22333321 2
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
..+.+.|+.+|..+|++++++.+ .|++++++||+.+||+...+ .+..++......+. .+.......+++|+
T Consensus 159 ~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~v 235 (367)
T TIGR01746 159 PGLAGGYAQSKWVAELLVREASD-RGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGA--YPDSPELTEDLTPV 235 (367)
T ss_pred cccCCChHHHHHHHHHHHHHHHh-cCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCC--CCCCCccccCcccH
Confidence 23456899999999999998876 49999999999999984332 23333333322221 22222236789999
Q ss_pred hHHHHHHHHHHHHhccccccC--CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHH
Q 012270 228 ENVAHAHVCAAEALDSRMVSV--AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWY 290 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~--~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~ 290 (467)
+|+|++++.++.. +.. .+++||+++++++++.|+++.+.+ +|.+.+.+..+.|....
T Consensus 236 ddva~ai~~~~~~-----~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~~~~~~~w~~~~ 294 (367)
T TIGR01746 236 DYVARAIVALSSQ-----PAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLKLVSFDEWLQRL 294 (367)
T ss_pred HHHHHHHHHHHhC-----CCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCCcCCHHHHHHHH
Confidence 9999999998872 322 278999999999999999999999 88887666666665433
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=254.90 Aligned_cols=267 Identities=13% Similarity=0.158 Sum_probs=194.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCC-CCC---------------CCcCCCCCeEEE
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESN-SLL---------------PDSLSSGRAEYH 68 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~-~~~---------------~~~~~~~~v~~~ 68 (467)
.+|+|||||||||||++|++.|++.++ .+|+++.|........++.. ..+ .+.....++..+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 578999999999999999999998764 26899999754221111100 000 001113578999
Q ss_pred EecCCCH------HHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCC
Q 012270 69 QVDVRDI------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH 141 (467)
Q Consensus 69 ~~Dl~d~------~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~ 141 (467)
.||++++ +..+.+.+++|+|||+|+......+++...++|+.|+.+++++|++. ++++|||+||++|||....
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~G 277 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQG 277 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCCCC
Confidence 9999987 45566667899999999976666778899999999999999999987 5789999999999976431
Q ss_pred C--CCCCC--C--------------------------------Ccc------------------cCCCCCChHHHHHHHH
Q 012270 142 D--IHNGD--E--------------------------------TLT------------------CCWKFQDLMCDLKAQA 167 (467)
Q Consensus 142 ~--~~~~~--E--------------------------------~~p------------------~~~~~~~~Y~~sK~~~ 167 (467)
. ..+.+ + ..+ .-...++.|+.+|+++
T Consensus 278 ~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~lA 357 (605)
T PLN02503 278 RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMG 357 (605)
T ss_pred eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHHHH
Confidence 1 11111 0 000 0022358999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCc----------ccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHH
Q 012270 168 EALVLFANNIDGLLTCALRPSNV----------FGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i----------~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
|++++++. .++|++|+||+.| +++++....+.++.. ..|.....+++++...|+|+||.++++++.+
T Consensus 358 E~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~-g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a 434 (605)
T PLN02503 358 EMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYY-GKGQLTGFLADPNGVLDVVPADMVVNATLAA 434 (605)
T ss_pred HHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhhe-eccceeEEEeCCCeeEeEEeecHHHHHHHHH
Confidence 99999875 4799999999999 555543333433322 3666556889999999999999999999998
Q ss_pred HHHhccccccCCCcEEEEcCC--CCcCHHHHHHHHHHHcCCC
Q 012270 238 AEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQ 277 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~--~~~s~~el~~~i~~~~g~~ 277 (467)
+..... .....+++||++++ ++++++|+++.+.+.....
T Consensus 435 ~a~~~~-~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~ 475 (605)
T PLN02503 435 MAKHGG-AAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSS 475 (605)
T ss_pred HHhhhc-ccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhC
Confidence 542111 11235789999998 8999999999999876543
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=213.71 Aligned_cols=310 Identities=18% Similarity=0.211 Sum_probs=237.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
+-..-|.|||||+|+.++.+|.+.| .+|.+--|...-.... ++.......+-+..-|++|++++.++.+...+
T Consensus 61 GiVaTVFGAtGFlGryvvnklak~G-SQviiPyR~d~~~~r~------lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNV 133 (391)
T KOG2865|consen 61 GIVATVFGATGFLGRYVVNKLAKMG-SQVIIPYRGDEYDPRH------LKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNV 133 (391)
T ss_pred ceEEEEecccccccHHHHHHHhhcC-CeEEEeccCCccchhh------eeecccccceeeeccCCCCHHHHHHHHHhCcE
Confidence 3457899999999999999999999 5999988876522211 22333446788899999999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~ 167 (467)
|||+.|......+.. ..++|+.+..++++.|++.||.|||++|+... .....+-|=++|+++
T Consensus 134 VINLIGrd~eTknf~-f~Dvn~~~aerlAricke~GVerfIhvS~Lga-----------------nv~s~Sr~LrsK~~g 195 (391)
T KOG2865|consen 134 VINLIGRDYETKNFS-FEDVNVHIAERLARICKEAGVERFIHVSCLGA-----------------NVKSPSRMLRSKAAG 195 (391)
T ss_pred EEEeeccccccCCcc-cccccchHHHHHHHHHHhhChhheeehhhccc-----------------cccChHHHHHhhhhh
Confidence 999999655444433 56999999999999999999999999999753 234557789999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCC-ccccccchhHHHHHHHHHHHHhccccc
Q 012270 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE-NMSDFTYVENVAHAHVCAAEALDSRMV 246 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~-~~~~~i~v~Dva~a~~~al~~~~~~~~ 246 (467)
|..++++-. ..+|+||+.|||..|+ +++.+....++-+.+++++.|+ ...+.|||-|+|++++.|++ .+
T Consensus 196 E~aVrdafP----eAtIirPa~iyG~eDr-fln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvk-----Dp 265 (391)
T KOG2865|consen 196 EEAVRDAFP----EATIIRPADIYGTEDR-FLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVK-----DP 265 (391)
T ss_pred HHHHHhhCC----cceeechhhhcccchh-HHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhcc-----Cc
Confidence 999999754 4799999999999875 5777777777667778888774 56799999999999999998 57
Q ss_pred cCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc-ceE
Q 012270 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR-TRT 325 (467)
Q Consensus 247 ~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~ 325 (467)
...|++|...+|..++..|+++.+-+...+-+...+.|-..+...+...+++...+ ....++.+++++.+.- +..
T Consensus 266 ~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf----~~~~pln~d~ie~~~v~~~v 341 (391)
T KOG2865|consen 266 DSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPF----PPPSPLNRDQIERLTVTDLV 341 (391)
T ss_pred cccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCC----CCCCCCCHHHhhheeehhhh
Confidence 88999999999999999999999999887766666666655555444444431111 1222467777766552 334
Q ss_pred eehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 326 FDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 326 ~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
.+.....++||.++ +++|..--+.+..|+..
T Consensus 342 lt~~~tleDLgv~~-t~le~~~~e~l~~yR~~ 372 (391)
T KOG2865|consen 342 LTGAPTLEDLGVVL-TKLELYPVEFLRQYRKG 372 (391)
T ss_pred cCCCCcHhhcCcee-eecccccHHHHHHHhhc
Confidence 45555556699997 58887666655555553
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=227.76 Aligned_cols=271 Identities=14% Similarity=0.118 Sum_probs=190.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH------h
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL------E 83 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~------~ 83 (467)
+|+||||||++|++++++|+++| ++|++++|+++.. ..++++.+.+|+.|++++.+++ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~~~~~--------------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~ 65 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSS--------------AGPNEKHVKFDWLDEDTWDNPFSSDDGME 65 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCCCccc--------------cCCCCccccccCCCHHHHHHHHhcccCcC
Confidence 48999999999999999999999 5999999987511 1236777889999999999999 6
Q ss_pred C-CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 84 G-ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 84 ~-~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
+ +|.|||+++.... ......+++++|++.|++||||+||..++.. . .
T Consensus 66 g~~d~v~~~~~~~~~----------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~----------------~------~ 113 (285)
T TIGR03649 66 PEISAVYLVAPPIPD----------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG----------------G------P 113 (285)
T ss_pred CceeEEEEeCCCCCC----------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC----------------C------c
Confidence 7 9999999873211 1234578999999999999999999755310 0 0
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhc
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~ 242 (467)
.+...|+++++. .|++++++||+.+|++.... .+...+..+.. ...+.++...+|||++|+|++++.++.
T Consensus 114 ~~~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~---~~~~~~~~~~~-~~~~~g~~~~~~v~~~Dva~~~~~~l~--- 183 (285)
T TIGR03649 114 AMGQVHAHLDSL---GGVEYTVLRPTWFMENFSEE---FHVEAIRKENK-IYSATGDGKIPFVSADDIARVAYRALT--- 183 (285)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeccHHhhhhccc---ccccccccCCe-EEecCCCCccCcccHHHHHHHHHHHhc---
Confidence 123356666542 48999999999988654211 11222333333 345567888999999999999999987
Q ss_pred cccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHH----
Q 012270 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ---- 318 (467)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---- 318 (467)
.+...++.|++++++.+|+.|+++.+.+.+|++.+...+|...+... +.. . ..|......+.
T Consensus 184 --~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~------l~~-~-----g~~~~~~~~~~~~~~ 249 (285)
T TIGR03649 184 --DKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQR------LQS-F-----GMPEDLARMLASLDT 249 (285)
T ss_pred --CCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHH------HHH-c-----CCCHHHHHHHHHHHH
Confidence 35556789999999999999999999999999888777877533211 100 0 11111111110
Q ss_pred -HhccceEeehhhHhhhCCCccccChHHHHHHHHH
Q 012270 319 -LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (467)
Q Consensus 319 -~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~ 352 (467)
.........++...+.+|.+|+ +++|.+++..+
T Consensus 250 ~~~~g~~~~~~~~~~~~~G~~p~-~~~~~~~~~~~ 283 (285)
T TIGR03649 250 AVKNGAEVRLNDVVKAVTGSKPR-GFRDFAESNKA 283 (285)
T ss_pred HHhCCccccccchHHHHhCcCCc-cHHHHHHHhhh
Confidence 0111111235666777899996 99998887643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=246.38 Aligned_cols=269 Identities=12% Similarity=0.048 Sum_probs=187.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+.|+||||||+||||++|+++|.++|+ +|.. ..+|++|.+++...+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-~v~~-----------------------------~~~~l~d~~~v~~~i~~~ 427 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-AYEY-----------------------------GKGRLEDRSSLLADIRNV 427 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-eEEe-----------------------------eccccccHHHHHHHHHhh
Confidence 3568999999999999999999999994 6631 1246788888888876
Q ss_pred CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCC----CCCCCCCCCcccC
Q 012270 84 GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGS----HDIHNGDETLTCC 153 (467)
Q Consensus 84 ~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~----~~~~~~~E~~p~~ 153 (467)
++|+|||+|+... +..++...+++|+.++.+|+++|++.|+ +++++||.+||+.+. ....+.+|+++ +
T Consensus 428 ~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~-~ 505 (668)
T PLN02260 428 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDK-P 505 (668)
T ss_pred CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCC-C
Confidence 6899999999432 2457889999999999999999999999 477888989986432 11236677653 2
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc-eEEecCCCccccccchhHHHH
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~Dva~ 232 (467)
..+.+.|+.+|.++|++++.+. +..++|+.++||.+... ...|+..+..... +.++ .+..+++|++.
T Consensus 506 ~~~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~-~~nfv~~~~~~~~~~~vp------~~~~~~~~~~~ 573 (668)
T PLN02260 506 NFTGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN-PRNFITKISRYNKVVNIP------NSMTVLDELLP 573 (668)
T ss_pred CCCCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC-ccHHHHHHhccceeeccC------CCceehhhHHH
Confidence 2345899999999999998874 45677888888654211 1233333333332 2221 24677888998
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
+++.+++ .+ .+++||+++++.+|+.|+++.+.+.++.......++.. + ..+.. ..|
T Consensus 574 ~~~~l~~------~~-~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~---------~-~~~~~-----~a~-- 629 (668)
T PLN02260 574 ISIEMAK------RN-LRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLE---------E-QAKVI-----VAP-- 629 (668)
T ss_pred HHHHHHH------hC-CCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHH---------H-hhhHh-----hCC--
Confidence 8888776 22 24699999999999999999999987522111112111 0 00000 000
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHH
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~ 352 (467)
. ... .+|++|+++.+|. ++ +|+|++++++.
T Consensus 630 r-------p~~-~l~~~k~~~~~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 630 R-------SNN-EMDASKLKKEFPE-LL-SIKESLIKYVF 659 (668)
T ss_pred C-------ccc-cccHHHHHHhCcc-cc-chHHHHHHHHh
Confidence 0 112 6899999998898 74 99999998864
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-27 Score=226.44 Aligned_cols=222 Identities=23% Similarity=0.209 Sum_probs=136.2
Q ss_pred EEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCc-----C---CCCCeEEEEecCCCH------HH
Q 012270 13 VLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDS-----L---SSGRAEYHQVDVRDI------SQ 77 (467)
Q Consensus 13 VtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~-----~---~~~~v~~~~~Dl~d~------~~ 77 (467)
|||||||+|++|+++|+++++. +|+++.|..+.....++-...+.+. . ...+++++.||++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 7999999999999999999842 8999999874211111100001111 1 257899999999874 55
Q ss_pred HHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCC----CCCC-ccc
Q 012270 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHN----GDET-LTC 152 (467)
Q Consensus 78 l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~----~~E~-~p~ 152 (467)
+..+.+.+|+|||+||..+...+.+...++|+.||+++++.|.+.+.++|+|+||..+.+........ .++. ...
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLDP 160 (249)
T ss_dssp HHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE-
T ss_pred hhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccchh
Confidence 77777889999999998877778888999999999999999998877799999995554332211100 1111 111
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHH-HHHHHhcCCCceEEecCCCcccccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVP-LLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~-~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
.....+.|..||+.+|++++++.++.|++++|+||+.|+|.... .... .+...+..|.....+++++...|++
T Consensus 161 ~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~v 240 (249)
T PF07993_consen 161 PQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDARLDLV 240 (249)
T ss_dssp -TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT--EE
T ss_pred hccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCceEeEE
Confidence 34556799999999999999998866999999999999994332 2233 3444455565555667777789999
Q ss_pred chhHHHHHH
Q 012270 226 YVENVAHAH 234 (467)
Q Consensus 226 ~v~Dva~a~ 234 (467)
+||.+|++|
T Consensus 241 PVD~va~aI 249 (249)
T PF07993_consen 241 PVDYVARAI 249 (249)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=234.01 Aligned_cols=198 Identities=18% Similarity=0.155 Sum_probs=153.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+||||||+||||++|+++|+++|+ +|++++|.+.. ...++++++.+|++|+. +.+++.++|+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr~~~~--------------~~~~~ve~v~~Dl~d~~-l~~al~~~D~V 64 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-TVSGIAQHPHD--------------ALDPRVDYVCASLRNPV-LQELAGEADAV 64 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCChhh--------------cccCCceEEEccCCCHH-HHHHhcCCCEE
Confidence 5899999999999999999999995 99999986531 11246889999999985 78888899999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
||+|+.... ....+|+.|+.|++++|++.|+ |+||+||. ||.. ..|. .+|
T Consensus 65 IHLAa~~~~-----~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~------------------~~~~----~aE 114 (699)
T PRK12320 65 IHLAPVDTS-----APGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRP------------------ELYR----QAE 114 (699)
T ss_pred EEcCccCcc-----chhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCC------------------cccc----HHH
Confidence 999985321 1235899999999999999998 79999986 3211 0121 478
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCC----cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccc
Q 012270 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (467)
Q Consensus 169 ~~v~~~~~~~g~~~~ilRp~~i~G~~~~~----~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~ 244 (467)
+++.. ++++++++|++++|||+... ++..++.....+++ ..++||+|++++++.+++
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~p----------I~vIyVdDvv~alv~al~----- 175 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARP----------IRVLHLDDLVRFLVLALN----- 175 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCc----------eEEEEHHHHHHHHHHHHh-----
Confidence 77765 45899999999999997653 33444443333333 345999999999999987
Q ss_pred cccCCCcEEEEcCCCCcCHHHHHHHHHHH
Q 012270 245 MVSVAGMAFFITNLEPIKFWDFLSIILEG 273 (467)
Q Consensus 245 ~~~~~g~~yni~~~~~~s~~el~~~i~~~ 273 (467)
. ...| +|||++++.+|+.|+++.+...
T Consensus 176 ~-~~~G-iyNIG~~~~~Si~el~~~i~~~ 202 (699)
T PRK12320 176 T-DRNG-VVDLATPDTTNVVTAWRLLRSV 202 (699)
T ss_pred C-CCCC-EEEEeCCCeeEHHHHHHHHHHh
Confidence 2 2234 9999999999999999988776
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=248.62 Aligned_cols=273 Identities=19% Similarity=0.126 Sum_probs=193.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC---CcEEEEEcCCCCccCCCCcCCC-----CCCCcCCCCCeEEEEecCCC----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRD---- 74 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g---~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~Dl~d---- 74 (467)
..++|+|||||||+|+++++.|++++ .++|+++.|.........+... .........+++++.+|+.+
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35899999999999999999999887 2489999996542110000000 00000112368999999974
Q ss_pred --HHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCC----------C
Q 012270 75 --ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH----------D 142 (467)
Q Consensus 75 --~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~----------~ 142 (467)
.+.+.++.+++|+|||+|+..............|+.|+.+++++|++.++++++|+||.++|+.... +
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~ 1129 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQAG 1129 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhhcc
Confidence 4567777788999999999665555566666789999999999999999999999999999963211 1
Q ss_pred CCCCCCCccc---CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceE
Q 012270 143 IHNGDETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKF 213 (467)
Q Consensus 143 ~~~~~E~~p~---~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~------~~~~~~~~~~~g~~~~ 213 (467)
.....|+.+. +..+.+.|+.+|+.+|+++..+++ .|++++++||+.|||++..+ ++..++.....-+
T Consensus 1130 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~--- 1205 (1389)
T TIGR03443 1130 GAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLG--- 1205 (1389)
T ss_pred CCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhC---
Confidence 1123343321 223456799999999999999876 59999999999999997543 2333333322211
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccc-cCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHH
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMV-SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~-~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~ 288 (467)
..++....++|++|+|+|++++.++.. .+ ...+.+||++++..+++.++++.+.+. |.+.+.+..+.|..
T Consensus 1206 ~~p~~~~~~~~~~Vddva~ai~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~w~~ 1276 (1389)
T TIGR03443 1206 LIPNINNTVNMVPVDHVARVVVAAALN----PPKESELAVAHVTGHPRIRFNDFLGTLKTY-GYDVEIVDYVHWRK 1276 (1389)
T ss_pred CcCCCCCccccccHHHHHHHHHHHHhC----CcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCCCCccCHHHHHH
Confidence 223445678999999999999999862 11 134469999999899999999999764 76655555555543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-25 Score=210.06 Aligned_cols=260 Identities=20% Similarity=0.143 Sum_probs=183.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCC-----CcCCCCCeEEEEecCCC------HHH
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-----DSLSSGRAEYHQVDVRD------ISQ 77 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~Dl~d------~~~ 77 (467)
+++|+||||||+|++|+.+|+.+-+-+|+|+.|..+......+-..... +.....+++.+.||+.. ...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 5799999999999999999999875599999998763211111100111 22446789999999973 455
Q ss_pred HHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCC--CCCCCCccc---
Q 012270 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDI--HNGDETLTC--- 152 (467)
Q Consensus 78 l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~--~~~~E~~p~--- 152 (467)
+.++.+.+|.|||+||..+...+..+....|+.||..+++.|...+.|.+.|+||.+|+....... ...+|++|.
T Consensus 81 ~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T COG3320 81 WQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNV 160 (382)
T ss_pred HHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccccccccc
Confidence 778888899999999988888888999999999999999999999999999999999985432221 122222322
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
...+.+.|++||+.+|.+++++.+. |++++|+|||.|-|+...+ ++.+++....+-+. +| +.+...+.+.
T Consensus 161 ~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~--~P-~~~~~~~~~p 236 (382)
T COG3320 161 GQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGI--AP-DSEYSLDMLP 236 (382)
T ss_pred cCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCC--CC-CcccchhhCc
Confidence 2345679999999999999999985 9999999999999987632 44445444333221 12 2344566666
Q ss_pred hhHHHHHHHHHHHHhccc------cccCCCcEEE-EcCCCCcCHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAEALDSR------MVSVAGMAFF-ITNLEPIKFWDFLSIILE 272 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~------~~~~~g~~yn-i~~~~~~s~~el~~~i~~ 272 (467)
++.+|+++......+... ++...-..|+ ..-|..++..++.+...+
T Consensus 237 ~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 237 VDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred cceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 666666655444332100 1222223454 233578999999998888
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=195.99 Aligned_cols=231 Identities=17% Similarity=0.142 Sum_probs=163.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC-HHHHHHHH-h
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVL-E 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~-~ 83 (467)
..+|+|+||||+|+||++++++|+++| ++|+++.|++.... . . .....+++++.+|++| .+.+.+.+ .
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~----~---~--~~~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVRDVDKAK----T---S--LPQDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEecCHHHHH----H---h--cccCCceEEEEeeCCCCHHHHHHHhhc
Confidence 357899999999999999999999999 59999998765210 0 0 0112468999999998 56777777 6
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
++|+|||+++..... ++...+++|..++.++++++++.+++|+||+||.++|+.... .+.++... ..++...|..+
T Consensus 85 ~~d~vi~~~g~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~--~~~~~~~~-~~~~~~~~~~~ 160 (251)
T PLN00141 85 DSDAVICATGFRRSF-DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMG--QILNPAYI-FLNLFGLTLVA 160 (251)
T ss_pred CCCEEEECCCCCcCC-CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcc--cccCcchh-HHHHHHHHHHH
Confidence 899999998854322 233446789999999999999999999999999999863221 11111100 11222334567
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|+++++ .|++++++||+.++++... +.. ...........+|+.+|+|++++.++.
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~------------~~~-~~~~~~~~~~~~i~~~dvA~~~~~~~~---- 219 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPT------------GNI-VMEPEDTLYEGSISRDQVAEVAVEALL---- 219 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCC------------ceE-EECCCCccccCcccHHHHHHHHHHHhc----
Confidence 8889988775 6899999999999986422 111 111111122467999999999999987
Q ss_pred ccccCCCcEEEEcCC---CCcCHHHHHHHHHH
Q 012270 244 RMVSVAGMAFFITNL---EPIKFWDFLSIILE 272 (467)
Q Consensus 244 ~~~~~~g~~yni~~~---~~~s~~el~~~i~~ 272 (467)
.+...+.++.+.+. ...++.++...+++
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 220 -CPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred -ChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 35556678888873 23788888776654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=184.64 Aligned_cols=182 Identities=31% Similarity=0.338 Sum_probs=144.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEEEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 90 (467)
|+|+||||++|+.++++|+++| ++|+++.|++.+. .+ .++++++.+|+.|++++.++++++|+|||
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~----------~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKA----------ED---SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGH----------HH---CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhc----------cc---ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 7999999999999999999999 5999999987621 11 57899999999999999999999999999
Q ss_pred cccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH
Q 012270 91 VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL 170 (467)
Q Consensus 91 ~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~ 170 (467)
+++.... +...+.+++++|++++++|+|++||.++|++.... ..++. ......|...|..+|+.
T Consensus 67 ~~~~~~~----------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 67 AAGPPPK----------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGL--FSDED----KPIFPEYARDKREAEEA 130 (183)
T ss_dssp CCHSTTT----------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSE--EEGGT----CGGGHHHHHHHHHHHHH
T ss_pred hhhhhcc----------cccccccccccccccccccceeeeccccCCCCCcc--ccccc----ccchhhhHHHHHHHHHH
Confidence 9985433 27788999999999999999999999998532211 01111 11125788999999998
Q ss_pred HHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 171 VLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 171 v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
+++ .+++++++||+.+||+.... .. .....+....++|+++|+|++++.+++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~~------------~~-~~~~~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSRS------------YR-LIKEGGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSSS------------EE-EESSTSTTSHCEEEHHHHHHHHHHHHH
T ss_pred HHh----cCCCEEEEECcEeEeCCCcc------------ee-EEeccCCCCcCcCCHHHHHHHHHHHhC
Confidence 875 68999999999999996331 11 111134556799999999999999886
|
... |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=195.66 Aligned_cols=228 Identities=20% Similarity=0.123 Sum_probs=165.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
.|++|||||+|+||++++++|+++| +.|+++.|++..... +.. ....++.++.+|++|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~r~~~~~~~-------~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG-DRVAATVRRPDALDD-------LKA-RYGDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHH-hccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 499999987541100 101 012468899999999998887664
Q ss_pred ---CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||.... ..+++..+++|+.++.++++++ ++.+.+++|++||.....
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 140 (276)
T PRK06482 73 ALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI------------ 140 (276)
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc------------
Confidence 47999999994321 2334678889999999999997 556778999999975431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCc---ccCCCCC----------cHHHHHHHhcCCCceE
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNV---FGPGDTQ----------LVPLLVNLAKPGWTKF 213 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i---~G~~~~~----------~~~~~~~~~~~g~~~~ 213 (467)
+..+.+.|+.+|+..|.+++.++.+ +|++++++||+.+ ||++... ....+......+.
T Consensus 141 ---~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 214 (276)
T PRK06482 141 ---AYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGS--- 214 (276)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhcc---
Confidence 1124578999999999999887644 6899999999988 6654321 0111222222211
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g 275 (467)
..-+.+++|++++++.+++ ....+..||+++++..+..|.++.+.+.++
T Consensus 215 -------~~~~~d~~~~~~a~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 215 -------FAIPGDPQKMVQAMIASAD------QTPAPRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred -------CCCCCCHHHHHHHHHHHHc------CCCCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 1124578999999999986 233456899999988888888887777664
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=191.69 Aligned_cols=229 Identities=15% Similarity=0.155 Sum_probs=160.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
+++++|||||+|+||++++++|+++| ++|++++|++.......+. +.. ...++.++.+|++|.+++.++++.
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG-AAVAIADLNQDGANAVADE---INK--AGGKAIGVAMDVTNEDAVNAGIDKVA 79 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH---HHh--cCceEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976421100000 100 123577899999999998877653
Q ss_pred -----CCEEEEcccCCC-------CCCChhhHHHhhHHH----HHHHHHHH-HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 85 -----ASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTAC-RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 85 -----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g----~~~ll~aa-~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+|+|||+|+... ...+++..+++|+.+ +.++++++ ++.+.+++|++||...+.
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~---------- 149 (262)
T PRK13394 80 ERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE---------- 149 (262)
T ss_pred HHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC----------
Confidence 899999999432 123355678899999 67777777 667789999999975431
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc-C--CCceEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK-P--GWTKFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~-~--g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|...+.+++.++.+ .+++++++||+.+++|.....++....... . .....+++.+...
T Consensus 150 -----~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
T PRK13394 150 -----ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGKTVD 224 (262)
T ss_pred -----CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcCCCC
Confidence 1134568999999999988877654 589999999999999864332222211100 0 0000122234456
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+|++++|+|++++.+++.. .....|+.|++.++.
T Consensus 225 ~~~~~~~dva~a~~~l~~~~---~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 225 GVFTTVEDVAQTVLFLSSFP---SAALTGQSFVVSHGW 259 (262)
T ss_pred CCCCCHHHHHHHHHHHcCcc---ccCCcCCEEeeCCce
Confidence 78999999999999998631 133458899998864
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=173.45 Aligned_cols=320 Identities=17% Similarity=0.145 Sum_probs=224.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHh--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+..||||-||.=|+.|++.|+.+| |+|.++-|..+... ..+-+....+.. .........+|++|...+.+.+.
T Consensus 28 rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFN-T~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFN-TARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccc-hhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 3568999999999999999999999 79999988776322 111111122211 12456778999999999999987
Q ss_pred CCCEEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCC---CeEEEEcCccccccCCCCCCCCCCCcccCCCCC
Q 012270 84 GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (467)
Q Consensus 84 ~~D~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v---~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~ 157 (467)
+++-|+|+|+.. -+.+-++.+-++...||.+|++|.+.++. -||-..||...||. -...|..|.. |.-|.
T Consensus 106 kPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGk--v~e~PQsE~T--PFyPR 181 (376)
T KOG1372|consen 106 KPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGK--VQEIPQSETT--PFYPR 181 (376)
T ss_pred CchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhccc--ccCCCcccCC--CCCCC
Confidence 479999999933 24455777888999999999999998853 28999999999953 3345778887 66899
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCccc---CCCC-CcHHH----HHHHhcCC-CceEEecCCCccccccchh
Q 012270 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFG---PGDT-QLVPL----LVNLAKPG-WTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 158 ~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G---~~~~-~~~~~----~~~~~~~g-~~~~~~g~g~~~~~~i~v~ 228 (467)
++|+.+|..+--++..|.+.+++-.| .|.+|. |+.. .++.+ -+..+.-| ....-.|+-+..+||-|..
T Consensus 182 SPYa~aKmy~~WivvNyREAYnmfAc---NGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~ 258 (376)
T KOG1372|consen 182 SPYAAAKMYGYWIVVNYREAYNMFAC---NGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAG 258 (376)
T ss_pred ChhHHhhhhheEEEEEhHHhhcceee---ccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhH
Confidence 99999999887777777666666544 355554 3222 23332 23333323 3346678888999999999
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCc--cCChHHHHHHHHHHHHHHHHhcc--
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGL-- 304 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~--~ip~~~~~~~~~~~~~~~~~~~~-- 304 (467)
|.++|+..++++ + ...-|-|+.++..|++||.+.....+|...... .+... -...-|.
T Consensus 259 dYVEAMW~mLQ~-----d--~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~-----------~~n~~g~v~ 320 (376)
T KOG1372|consen 259 DYVEAMWLMLQQ-----D--SPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEV-----------GKNDDGVVR 320 (376)
T ss_pred HHHHHHHHHHhc-----C--CCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccc-----------cccCCceEE
Confidence 999999999983 2 234788999999999999998888777432100 00000 0000000
Q ss_pred cccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
-..++..+.|..++.+ .-|++|+++.|||+|++++.+-+++|++.-.+..
T Consensus 321 V~v~~kYyRPtEVd~L----qGdasKAk~~LgW~pkv~f~eLVkeMv~~DieLm 370 (376)
T KOG1372|consen 321 VKVDPKYYRPTEVDTL----QGDASKAKKTLGWKPKVTFPELVKEMVASDIELM 370 (376)
T ss_pred EEecccccCcchhhhh----cCChHHHHHhhCCCCccCHHHHHHHHHHhHHHHH
Confidence 0012334455555433 3689999999999999999999999998766543
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=196.41 Aligned_cols=237 Identities=19% Similarity=0.120 Sum_probs=164.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCC--CC--CcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL--LP--DSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~--~~--~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
++++|+||||+|+||++++++|+++| ++|++++|+............. +. ......+++++.+|+.|.+++.+++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 56789999999999999999999999 5999999976421100000000 00 0001245889999999999999999
Q ss_pred hCCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 83 EGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 83 ~~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
.++|+|||++|.... ..++...+++|+.|+.+++++|++.+++|||++||.+++..+. .+. .......|.
T Consensus 158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~------p~~---~~~sk~~~~ 228 (576)
T PLN03209 158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF------PAA---ILNLFWGVL 228 (576)
T ss_pred cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc------ccc---chhhHHHHH
Confidence 999999999985432 2345667899999999999999999999999999986631110 010 112345688
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHh
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~ 241 (467)
..|..+|+.+.. .|+++++||||.++++.+... ..+. +.....+......+..+|||++++.++..
T Consensus 229 ~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~--------~t~~-v~~~~~d~~~gr~isreDVA~vVvfLasd- 294 (576)
T PLN03209 229 CWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK--------ETHN-LTLSEEDTLFGGQVSNLQVAELMACMAKN- 294 (576)
T ss_pred HHHHHHHHHHHH----cCCCEEEEECCeecCCccccc--------cccc-eeeccccccCCCccCHHHHHHHHHHHHcC-
Confidence 889999999876 789999999999998754321 0111 11111111223458899999999998862
Q ss_pred ccccccCCCcEEEEcCCCC---cCHHHHHHHH
Q 012270 242 DSRMVSVAGMAFFITNLEP---IKFWDFLSII 270 (467)
Q Consensus 242 ~~~~~~~~g~~yni~~~~~---~s~~el~~~i 270 (467)
.....+++|.+.++.. ..+.++++.+
T Consensus 295 ---~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 295 ---RRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred ---chhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 1235678999999743 3455544433
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-22 Score=186.96 Aligned_cols=225 Identities=22% Similarity=0.214 Sum_probs=162.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEEEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 90 (467)
|+|+||||.+|+++++.|++.+ ++|+++.|+.+.. ..+.+...+++.+.+|+.|++++.++++|+|+||.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~l~R~~~~~---------~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~ 70 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRALVRDPSSD---------RAQQLQALGAEVVEADYDDPESLVAALKGVDAVFS 70 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEEEESSSHHH---------HHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEEEEeccchh---------hhhhhhcccceEeecccCCHHHHHHHHcCCceEEe
Confidence 7999999999999999999988 5999999987411 11122335789999999999999999999999998
Q ss_pred cccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH
Q 012270 91 VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL 170 (467)
Q Consensus 91 ~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~ 170 (467)
+.+... ........++++||+++||+|||+.|....+ ++.. ...|..+.-..|...|+.
T Consensus 71 ~~~~~~---------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~----------~~~~--~~~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 71 VTPPSH---------PSELEQQKNLIDAAKAAGVKHFVPSSFGADY----------DESS--GSEPEIPHFDQKAEIEEY 129 (233)
T ss_dssp ESSCSC---------CCHHHHHHHHHHHHHHHT-SEEEESEESSGT----------TTTT--TSTTHHHHHHHHHHHHHH
T ss_pred ecCcch---------hhhhhhhhhHHHhhhccccceEEEEEecccc----------cccc--cccccchhhhhhhhhhhh
Confidence 876432 2224556889999999999999976654433 1111 112334455789999999
Q ss_pred HHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCC-CceEEecCCCcccccc-chhHHHHHHHHHHHHhccccccC
Q 012270 171 VLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG-WTKFIIGSGENMSDFT-YVENVAHAHVCAAEALDSRMVSV 248 (467)
Q Consensus 171 v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g-~~~~~~g~g~~~~~~i-~v~Dva~a~~~al~~~~~~~~~~ 248 (467)
+++ .+++++++||+..+......+.+ + ...... ..+.++++++....++ +.+|++++...++.. +..
T Consensus 130 l~~----~~i~~t~i~~g~f~e~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~-----p~~ 198 (233)
T PF05368_consen 130 LRE----SGIPYTIIRPGFFMENLLPPFAP-V-VDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLD-----PEK 198 (233)
T ss_dssp HHH----CTSEBEEEEE-EEHHHHHTTTHH-T-TCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHS-----GGG
T ss_pred hhh----ccccceeccccchhhhhhhhhcc-c-ccccccceEEEEccCCCccccccccHHHHHHHHHHHHcC-----hHH
Confidence 988 58999999998775432111111 0 012222 2467788887767775 999999999999983 433
Q ss_pred --CCcEEEEcCCCCcCHHHHHHHHHHHcCCCC
Q 012270 249 --AGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (467)
Q Consensus 249 --~g~~yni~~~~~~s~~el~~~i~~~~g~~~ 278 (467)
.|+.+++++ +.+|..|+++.+.+.+|++.
T Consensus 199 ~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v 229 (233)
T PF05368_consen 199 HNNGKTIFLAG-ETLTYNEIAAILSKVLGKKV 229 (233)
T ss_dssp TTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEE
T ss_pred hcCCEEEEeCC-CCCCHHHHHHHHHHHHCCcc
Confidence 467888877 88999999999999999873
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=183.10 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=155.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+.++++||||+|+||++++++|+++| ++|++++|+.......... .+. ......+.++.+|++|.+++.++++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~--~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAA--ELN-ALRPGSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHH--HHH-hhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999864311000000 000 0112357889999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... ...+++.++++|+.++.++++++... .-.+++++||... .
T Consensus 81 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~ 147 (249)
T PRK09135 81 AAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA-------------E 147 (249)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh-------------c
Confidence 4799999999421 12345778999999999999999753 1235555554321 1
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHH-HHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLV-NLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~~~~~-~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
. +..+...|+.+|+.+|.+++.++.+. +++++++||+.++||.+...++... .....+.+. ..+.+
T Consensus 148 ~--~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 216 (249)
T PRK09135 148 R--PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAILARTPL---------KRIGT 216 (249)
T ss_pred C--CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHHHhcCCc---------CCCcC
Confidence 1 34567899999999999999887543 6999999999999998654333322 222222221 12235
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
++|+|+++..++.. .....|++||+++++.++
T Consensus 217 ~~d~a~~~~~~~~~----~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 217 PEDIAEAVRFLLAD----ASFITGQILAVDGGRSLT 248 (249)
T ss_pred HHHHHHHHHHHcCc----cccccCcEEEECCCeecc
Confidence 89999999766541 234578899999987654
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-21 Score=179.28 Aligned_cols=223 Identities=15% Similarity=0.114 Sum_probs=159.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+|+||||+|+||++++++|+++|+ +|+++.|........... ... ....++.++.+|+.|++++.++++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~ 79 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVE--AVE--ALGRRAQAVQADVTDKAALEAAVAAAV 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHH--HHH--hcCCceEEEECCcCCHHHHHHHHHHHH
Confidence 567999999999999999999999995 887777654311100000 000 113468899999999999887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++..+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~---------- 149 (249)
T PRK12825 80 ERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG---------- 149 (249)
T ss_pred HHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC----------
Confidence 4799999999332 12334678899999999999887 4567889999999877621
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
..+...|+.+|...|.+++.++.+ .+++++++||+.++|+............. .+ ......++
T Consensus 150 -----~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~ 215 (249)
T PRK12825 150 -----WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREAK---DA------ETPLGRSG 215 (249)
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHhh---hc------cCCCCCCc
Confidence 123568999999999888776543 58999999999999987543222111110 10 01123489
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
+++|+|+++..+++.. .....|+.|+++++.++
T Consensus 216 ~~~dva~~~~~~~~~~---~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 216 TPEDIARAVAFLCSDA---SDYITGQVIEVTGGVDV 248 (249)
T ss_pred CHHHHHHHHHHHhCcc---ccCcCCCEEEeCCCEee
Confidence 9999999999988621 12456899999997543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=183.74 Aligned_cols=228 Identities=17% Similarity=0.170 Sum_probs=155.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH-----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL----- 82 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~----- 82 (467)
++++|||||+|+||++++++|+++| ++|++++|+.......... +. ....++..+.+|+.|.+++.+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG-ANVVVNDLGEAGAEAAAKV---AT--DAGGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 4999999976411000000 00 01246888999999999766554
Q ss_pred --hCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 83 --EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 83 --~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
.++|+|||+++... ...+.+..++.|+.++.++++++ ++.+++++|++||...+..
T Consensus 75 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~----------- 143 (255)
T TIGR01963 75 EFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA----------- 143 (255)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC-----------
Confidence 35799999998432 11224567789999988888877 5567889999999866521
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHH-hcCCCce--EEecCCCcccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-AKPGWTK--FIIGSGENMSD 223 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~-~~~g~~~--~~~g~g~~~~~ 223 (467)
......|+.+|...|.+++.++.+ .+++++++||+.+++|.....++..... ....... .....+.+.++
T Consensus 144 ----~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
T TIGR01963 144 ----SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQPTKR 219 (255)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCcccc
Confidence 122468999999999888776543 4899999999999988532222111100 0000000 00112345678
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++|++|+|++++.+++.. .....|+.|++.++.
T Consensus 220 ~~~~~d~a~~~~~~~~~~---~~~~~g~~~~~~~g~ 252 (255)
T TIGR01963 220 FVTVDEVAETALFLASDA---AAGITGQAIVLDGGW 252 (255)
T ss_pred CcCHHHHHHHHHHHcCcc---ccCccceEEEEcCcc
Confidence 999999999999998621 123468899999864
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=187.44 Aligned_cols=229 Identities=14% Similarity=0.036 Sum_probs=163.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+...... +.. ....++..+.+|++|.+++.++++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~~-------~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERG-DRVVATARDTATLAD-------LAE-KYGDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHH-hccCCeeEEEccCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 599999987642100 000 012357788999999999877655
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~---------- 142 (275)
T PRK08263 73 EHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISA---------- 142 (275)
T ss_pred HHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCC----------
Confidence 4799999999432 22456788999999998888876 5567789999999877621
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC------cH---HHHHHHhcCCCceEEec
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ------LV---PLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~------~~---~~~~~~~~~g~~~~~~g 216 (467)
......|+.+|+..|.+.+.++.+ .|++++++||+.+..+.... .. .........
T Consensus 143 -----~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-------- 209 (275)
T PRK08263 143 -----FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAE-------- 209 (275)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHH--------
Confidence 123467999999999888777643 68999999999887664321 00 111111111
Q ss_pred CCCccccc-cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHH
Q 012270 217 SGENMSDF-TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273 (467)
Q Consensus 217 ~g~~~~~~-i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~ 273 (467)
......+ ++++|+|++++.+++ .+...++.|+.++++.+++.++.+.+.+.
T Consensus 210 -~~~~~~~~~~p~dva~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 210 -QWSERSVDGDPEAAAEALLKLVD-----AENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred -HHHhccCCCCHHHHHHHHHHHHc-----CCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 1112345 889999999999998 34445544443344788999998888775
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-21 Score=180.17 Aligned_cols=222 Identities=16% Similarity=0.106 Sum_probs=159.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+|+||||+|+||++++++|+++| ++|++++|+.......... +. ....++.++.+|+.|++++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAEL---VE--AAGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999975311000000 00 012358889999999999888775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
.+|+|||+++... ...++...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 78 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~--------- 148 (251)
T PRK12826 78 VEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV--------- 148 (251)
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc---------
Confidence 5899999998432 223456789999999999999874 456789999999866410
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHH-HHHhcCCCceEEecCCCcccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLL-VNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~-~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++||......... ...+..+.+ ...
T Consensus 149 -----~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 214 (251)
T PRK12826 149 -----GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIP---------LGR 214 (251)
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCC---------CCC
Confidence 1234568999999999999887543 4899999999999999654322211 222222211 126
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++++|+|.++..++... .....|+.|++.++.
T Consensus 215 ~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDE---ARYITGQTLPVDGGA 247 (251)
T ss_pred CcCHHHHHHHHHHHhCcc---ccCcCCcEEEECCCc
Confidence 889999999999877521 123468999998864
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=188.27 Aligned_cols=266 Identities=18% Similarity=0.177 Sum_probs=189.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCCCCCC----------CcCCCCCeEEEEecCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLP----------DSLSSGRAEYHQVDVRD 74 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~Dl~d 74 (467)
..++|+|||||||+|..+++.|++.-. ..++++-|.........+-..... ......++..+.||+.+
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~ 90 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISE 90 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccC
Confidence 468999999999999999999999753 278888887653221111100000 00122568889999976
Q ss_pred H------HHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCC-CC--C
Q 012270 75 I------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH-DI--H 144 (467)
Q Consensus 75 ~------~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~-~~--~ 144 (467)
+ ..+....+.+|+|||+||.....+.......+|+.||+++++.|++. +.+-++|+||+.+.-.... .. .
T Consensus 91 ~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~~y 170 (467)
T KOG1221|consen 91 PDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEKPY 170 (467)
T ss_pred cccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccccccccc
Confidence 4 34556677899999999987777777888999999999999999998 5789999999866511000 00 0
Q ss_pred C------------CCCCccc----------CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHH
Q 012270 145 N------------GDETLTC----------CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLL 202 (467)
Q Consensus 145 ~------------~~E~~p~----------~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~ 202 (467)
+ .+|+... -...++.|..+|+.+|+.+.+.+ .++|.+|+||+.|......++.. |
T Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~EP~pG-W 247 (467)
T KOG1221|consen 171 PMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKEPFPG-W 247 (467)
T ss_pred CccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccCCCCC-c
Confidence 1 1111110 12356889999999999999986 46999999999999887654322 2
Q ss_pred HHH----------hcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC--CCcCHHHHHHHH
Q 012270 203 VNL----------AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSII 270 (467)
Q Consensus 203 ~~~----------~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~--~~~s~~el~~~i 270 (467)
+.. .-+|.......|.+...|+|.||.++.+++.+.-......+...-.+||++++ .++++.++.+..
T Consensus 248 idn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~ 327 (467)
T KOG1221|consen 248 IDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIELA 327 (467)
T ss_pred cccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHHH
Confidence 222 23444456667888999999999999999977643221111122459999998 579999999999
Q ss_pred HHHcC
Q 012270 271 LEGLG 275 (467)
Q Consensus 271 ~~~~g 275 (467)
.+...
T Consensus 328 ~~~~~ 332 (467)
T KOG1221|consen 328 LRYFE 332 (467)
T ss_pred HHhcc
Confidence 88865
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=183.05 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=155.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|++......... +. ....++..+.+|+.|++++.++++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAAAAEA---LQ--KAGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5999999976521100000 00 013468889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHH----HHHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~----ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+.+..+++|+.++.+ +++++++.+.+++|++||...+.
T Consensus 77 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~----------- 145 (258)
T PRK12429 77 ETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV----------- 145 (258)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc-----------
Confidence 5899999998322 122345577899999554 44555566788999999986652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce-----EEecCCCc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK-----FIIGSGEN 220 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~-----~~~g~g~~ 220 (467)
+..+.+.|+.+|+..+.+.+.++.+ .+++++++||+.+++|.....+...... .+.+. ..++....
T Consensus 146 ----~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 219 (258)
T PRK12429 146 ----GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKE--RGISEEEVLEDVLLPLVP 219 (258)
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccc--cCCChHHHHHHHHhccCC
Confidence 1234578999999999888766432 5799999999999998643322211100 01000 01122234
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+.|++++|+|+++..++... .....|+.|++.++
T Consensus 220 ~~~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g 254 (258)
T PRK12429 220 QKRFTTVEEIADYALFLASFA---AKGVTGQAWVVDGG 254 (258)
T ss_pred ccccCCHHHHHHHHHHHcCcc---ccCccCCeEEeCCC
Confidence 468999999999999887621 13346889999876
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=175.11 Aligned_cols=228 Identities=15% Similarity=0.118 Sum_probs=156.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+.......... .+.. ...++..+.+|++|++++.++++
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~--~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVA--EIEA--AGGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHH--HHHh--cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 5999988865311000000 0000 12357889999999999887765
Q ss_pred ----CCCEEEEcccCC-CCCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCC
Q 012270 84 ----GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (467)
Q Consensus 84 ----~~D~Vih~aa~~-~~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~ 156 (467)
++|+|||+|+.. ....++...+++|+.++.++++++.+. ...++|++||...... +..+.. ..
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~------~~~~~~----~~ 149 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFI------PTVKTM----PE 149 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcC------ccccCC----cc
Confidence 489999999842 233456778899999999999999875 2358999999644210 111211 12
Q ss_pred CChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 157 QDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
...|+.+|+..|.+++.++. ..|+++++++|+.+-++... .+......+. .........++++++|+|++
T Consensus 150 ~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~dva~~ 222 (248)
T PRK07806 150 YEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA----TLLNRLNPGA---IEARREAAGKLYTVSEFAAE 222 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh----hhhccCCHHH---HHHHHhhhcccCCHHHHHHH
Confidence 46899999999999988753 25899999999877665321 1111100000 00000112479999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
++.+++ .+...|++|++++++.+
T Consensus 223 ~~~l~~-----~~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 223 VARAVT-----APVPSGHIEYVGGADYF 245 (248)
T ss_pred HHHHhh-----ccccCccEEEecCccce
Confidence 999998 35568999999998643
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=175.94 Aligned_cols=229 Identities=16% Similarity=0.102 Sum_probs=164.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+++++||||+|+||+++++.|+++| ++|++++|++..... +.+.....++..+.+|+.|.+++.++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g-~~v~~~~r~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG-DRVLALDIDAAALAA-------FADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999 599999987642100 0111123468889999999999887765
Q ss_pred ---CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+++.... ...+...+++|+.++.++++++. +.+.+++|++||...+. .
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--~--------- 142 (257)
T PRK07074 74 ERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMA--A--------- 142 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcC--C---------
Confidence 47999999984321 12234567799999999988884 34567899999965431 0
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEecCCCcccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~---~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
.....|+.+|+..|.+++.++.+ .|++++++||+.++++..... .+.+...... .....+
T Consensus 143 -----~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~~ 208 (257)
T PRK07074 143 -----LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKK---------WYPLQD 208 (257)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHh---------cCCCCC
Confidence 11247999999999999888744 479999999999988753211 1122222211 123468
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~ 272 (467)
+++++|++++++.++... .....|+.+++.++...+..|+++.+.+
T Consensus 209 ~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 209 FATPDDVANAVLFLASPA---ARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCCHHHHHHHHHHHcCch---hcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 999999999999998521 1345688999999888999998887654
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=178.13 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=167.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||+++++.|+++| ++|++++|+.......... +.......++.++.+|+.|++++.++++
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIVGRNPDKLAAAAEE---IEALKGAGAVRYEPADVTDEDQVARAVDAAT 81 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---HHhccCCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999875421100000 1111112467888999999998887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ...++..++++|+.++.++++++.+. +..+++++||...+.
T Consensus 82 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~---------- 151 (276)
T PRK05875 82 AWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN---------- 151 (276)
T ss_pred HHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC----------
Confidence 5899999998321 12235678899999999999877653 345899999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+++.++.+ .+++++++||+.+.++...... .......... ....
T Consensus 152 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~ 217 (276)
T PRK05875 152 -----THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRAC---------TPLP 217 (276)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcC---------CCCC
Confidence 1123578999999999999887643 4699999999998776432211 1111111111 1224
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc----CHHHHHHHHHHHcC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI----KFWDFLSIILEGLG 275 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~----s~~el~~~i~~~~g 275 (467)
.+++++|+|+++..+++.. .....|+.++++++..+ ++.|+++.+.+..+
T Consensus 218 ~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 218 RVGEVEDVANLAMFLLSDA---ASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCcCHHHHHHHHHHHcCch---hcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 5678999999999998631 12345889999998665 78888887776544
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=179.68 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=160.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| ++|++++|+...... +.+.. ..++..+.+|++|.+++.++++
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEG-ARVVIADIKPARARL-------AALEI-GPAAIAVSLDVTRQDSIDRIVAAAV 75 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHH-------HHHHh-CCceEEEEccCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999 599999987642110 00001 2357889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCC-----CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~-----v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ...+++..+++|+.++.++++++.... -.++|++||.....
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 145 (257)
T PRK07067 76 ERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR---------- 145 (257)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC----------
Confidence 4799999998421 224467789999999999999986531 24799999964321
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc---CCCceEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK---PGWTKFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~---~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+++.++. ..|++++++||+.++++........ ..... .+......+.+.+.
T Consensus 146 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
T PRK07067 146 -----GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDAL-FARYENRPPGEKKRLVGEAVPL 219 (257)
T ss_pred -----CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhh-hhhccCCCHHHHHHHHhhcCCC
Confidence 123457899999999999887754 3689999999999999853321111 11100 01111122334456
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
..+++++|+|++++.++... .....|++|++.+++.+
T Consensus 220 ~~~~~~~dva~~~~~l~s~~---~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 220 GRMGVPDDLTGMALFLASAD---ADYIVAQTYNVDGGNWM 256 (257)
T ss_pred CCccCHHHHHHHHHHHhCcc---cccccCcEEeecCCEeC
Confidence 78999999999999888521 23457899999987554
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=172.21 Aligned_cols=222 Identities=17% Similarity=0.186 Sum_probs=157.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+|+++||||+|+||+++++.|+++| ++|++++|..........+ .+. ....++.++.+|++|++++.++++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG-FDLAINDRPDDEELAATQQ--ELR--ALGVEVIFFPADVADLSAHEAMLDAAQA 76 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecCchhHHHHHHH--HHH--hcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 5999998864311000000 000 012368899999999998877654
Q ss_pred ---CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC-----C-----CCeEEEEcCccccccCCC
Q 012270 84 ---GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC-----K-----VRRLVYNSTADVVFDGSH 141 (467)
Q Consensus 84 ---~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~-----v~r~v~~SS~~vyg~~~~ 141 (467)
.+|+|||+|+... ...+++..+++|+.++.++++++... + +.++|++||...+.
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---- 152 (256)
T PRK12745 77 AWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM---- 152 (256)
T ss_pred hcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc----
Confidence 4799999998422 12445678999999999999887543 1 56899999987652
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCC
Q 012270 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 142 ~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..|.+++.++.+ +|++++++||+.+.++........+......+.
T Consensus 153 -----------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~-------- 213 (256)
T PRK12745 153 -----------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGL-------- 213 (256)
T ss_pred -----------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhhcC--------
Confidence 1234568999999999999888743 689999999999998765433233322222211
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.....+.+++|+|+++..++... .+...|+.|++.++..
T Consensus 214 ~~~~~~~~~~d~a~~i~~l~~~~---~~~~~G~~~~i~gg~~ 252 (256)
T PRK12745 214 VPMPRWGEPEDVARAVAALASGD---LPYSTGQAIHVDGGLS 252 (256)
T ss_pred CCcCCCcCHHHHHHHHHHHhCCc---ccccCCCEEEECCCee
Confidence 12245779999999999887521 2235688999988743
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=171.61 Aligned_cols=220 Identities=19% Similarity=0.135 Sum_probs=158.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+|+||||+|+||++++++|+++|+ +|++++|++......... +. ....++.++.+|+.|++++.+++++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAE---LR--AAGGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHH---HH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 457999999999999999999999995 899999986421100000 00 0134578889999999988777653
Q ss_pred -----CCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 85 -----ASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 85 -----~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+|+|||+++.... .+++...++.|+.++.++++++. +.+++++|++||.....
T Consensus 78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~----------- 146 (246)
T PRK05653 78 EAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT----------- 146 (246)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc-----------
Confidence 6999999984221 12346678999999999998885 45778999999975431
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|...|.+++.++++ .+++++++||+.++|+....+............ ....++
T Consensus 147 ----~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 213 (246)
T PRK05653 147 ----GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEI---------PLGRLG 213 (246)
T ss_pred ----CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHhcC---------CCCCCc
Confidence 1234567999999998888887543 489999999999999876432222222222211 125688
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|+++..++... .....|+.|+++++.
T Consensus 214 ~~~dva~~~~~~~~~~---~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 214 QPEEVANAVAFLASDA---ASYITGQVIPVNGGM 244 (246)
T ss_pred CHHHHHHHHHHHcCch---hcCccCCEEEeCCCe
Confidence 9999999999988521 234578899999874
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=172.72 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=151.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++++++||||+|+||++++++|+++| ++|++++|+.... ...+. +. ....++.++.+|++|.+++.++++
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~-~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSELVH-EVAAE---LR--AAGGEALALTADLETYAGAQAAMAA 77 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchHHH-HHHHH---HH--hcCCeEEEEEEeCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 5999999864310 00000 00 012357788999999988776654
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+|+... ...+++..+++|+.++..++++ +++.+..++|++||...++.
T Consensus 78 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------- 150 (260)
T PRK12823 78 AVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI------- 150 (260)
T ss_pred HHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-------
Confidence 4799999998321 2234566788999887755544 44556679999999876521
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-------------CcHHHHHHHhcCC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-------------QLVPLLVNLAKPG 209 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~-------------~~~~~~~~~~~~g 209 (467)
+..+|+.+|+..|.+++.++.+ .|+++++++|+.+++|... ...+.+......+
T Consensus 151 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T PRK12823 151 ----------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDS 220 (260)
T ss_pred ----------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhcc
Confidence 1347999999999999887644 4899999999999997311 1122232223222
Q ss_pred CceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 210 ~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+ ..-+.+++|+|++++.++.. ......|+.+++.+++
T Consensus 221 ~~---------~~~~~~~~dva~~~~~l~s~---~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 221 SL---------MKRYGTIDEQVAAILFLASD---EASYITGTVLPVGGGD 258 (260)
T ss_pred CC---------cccCCCHHHHHHHHHHHcCc---ccccccCcEEeecCCC
Confidence 22 12355789999999988751 0123578899998764
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=177.70 Aligned_cols=225 Identities=15% Similarity=0.050 Sum_probs=154.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| +.|++++|++.......+. ........+++++.+|++|++++.+ ++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~ 76 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQ---ATQLNLQQNIKVQQLDVTDQNSIHN-FQLVL 76 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHH---HHhcCCCCceeEEecCCCCHHHHHH-HHHHH
Confidence 35789999999999999999999999 5999999876421110000 1111112468899999999988765 32
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...++...+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 77 ~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~----------- 145 (280)
T PRK06914 77 KEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV----------- 145 (280)
T ss_pred HhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC-----------
Confidence 4799999998432 11334567889999999888885 556778999999975431
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcH-------------HHHHHHhcCCCce
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLV-------------PLLVNLAKPGWTK 212 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~-------------~~~~~~~~~g~~~ 212 (467)
+..+...|+.+|...|.+++.++ ..+|++++++|||.+.++...... ......+...
T Consensus 146 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (280)
T PRK06914 146 ----GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKH--- 218 (280)
T ss_pred ----CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHH---
Confidence 12345689999999999988875 346899999999999887322100 0111111000
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHH
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~ 264 (467)
. ......+++++|+|++++.+++ .+.. +..|+++++..+++.
T Consensus 219 --~--~~~~~~~~~~~dva~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 219 --I--NSGSDTFGNPIDVANLIVEIAE-----SKRP-KLRYPIGKGVKLMIL 260 (280)
T ss_pred --H--hhhhhccCCHHHHHHHHHHHHc-----CCCC-CcccccCCchHHHHH
Confidence 0 0122467899999999999998 2332 357888876555543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=176.83 Aligned_cols=229 Identities=15% Similarity=0.124 Sum_probs=156.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+++++|||||+|+||++++++|+++|+ +|++++|++..... +.+.....++..+.+|+.|++++.++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAA-------TAARLPGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-------HHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence 3568999999999999999999999995 89999997641110 0011111256889999999998877764
Q ss_pred -----CCCEEEEcccCC-C-------CCCChhhHHHhhHHHHHHHHHHHHh----CCC-CeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACRE----CKV-RRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~~-~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v-~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+++.. . ...++...+++|+.++.++++++.+ .+. ++++++||.+.+.
T Consensus 81 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~-------- 152 (264)
T PRK12829 81 VERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL-------- 152 (264)
T ss_pred HHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc--------
Confidence 589999999943 1 1234578899999999999998743 344 6788888764321
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE--EecCCCc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF--IIGSGEN 220 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~--~~g~g~~ 220 (467)
...+...|+.+|...|.+++.++.+ .+++++++||+.++|+......+........+.... -......
T Consensus 153 -------~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (264)
T PRK12829 153 -------GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKIS 225 (264)
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCC
Confidence 1123357999999999998887643 479999999999999865432221111111000000 0000112
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
...+++++|+|+++..++.. ......|+.|+++++..
T Consensus 226 ~~~~~~~~d~a~~~~~l~~~---~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 226 LGRMVEPEDIAATALFLASP---AARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCCCHHHHHHHHHHHcCc---cccCccCcEEEeCCCcc
Confidence 34689999999999887641 12345788999999743
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=174.02 Aligned_cols=228 Identities=15% Similarity=0.113 Sum_probs=160.7
Q ss_pred CCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 2 PFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 2 ~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
.+....+++++||||+|+||++++++|+++| ++|++++|+........+. +.. ...++..+.+|+.|.+++.++
T Consensus 4 ~~~~~~~k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---i~~--~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 4 NLFDLTGRRALVTGSSQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAES---LKG--QGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred cccCCCCCEEEEECCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHh--cCceEEEEEccCCCHHHHHHH
Confidence 3433456899999999999999999999999 5999999876411000000 100 123578889999999998887
Q ss_pred Hh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCC
Q 012270 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 82 ~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++ ++|+|||+|+... ..++++..+++|+.++.++++++.+. +.+++|++||.....
T Consensus 78 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------ 151 (255)
T PRK07523 78 IDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL------ 151 (255)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc------
Confidence 75 3799999999432 12334667889999999999988754 567999999975431
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|...|.+++.++. .+|++++++||+.+.++...... +.+...+....
T Consensus 152 ---------~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~-------- 214 (255)
T PRK07523 152 ---------ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRT-------- 214 (255)
T ss_pred ---------CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcC--------
Confidence 123456899999999999888864 36899999999999888533211 12222222221
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
....+.+++|+|.+++.++.. ......|+.+++.++...|
T Consensus 215 -~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 215 -PAGRWGKVEELVGACVFLASD---ASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred -CCCCCcCHHHHHHHHHHHcCc---hhcCccCcEEEECCCeecc
Confidence 123577899999999988852 1234568899998875443
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=170.63 Aligned_cols=211 Identities=13% Similarity=0.110 Sum_probs=154.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+++++|||||+|+||+++++.|+++| ++|++++|++....... +.....+.+.+.+|+.|.+++.++++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG-ARVALIGRGAAPLSQTL-------PGVPADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC-CeEEEEeCChHhHHHHH-------HHHhhcCceEEEeecCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 59999999764211100 01122356788899999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... ...++...+++|..++.++++++. +.+++++|++||...++.
T Consensus 78 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 147 (239)
T PRK12828 78 RQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA---------- 147 (239)
T ss_pred HHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC----------
Confidence 5899999998432 112245678899999999988875 456889999999987631
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
..+...|+.+|...+.+++.++.. .++++.++||+.++++..... .+ ......++
T Consensus 148 -----~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~---------------~~--~~~~~~~~ 205 (239)
T PRK12828 148 -----GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD---------------MP--DADFSRWV 205 (239)
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc---------------CC--chhhhcCC
Confidence 123467999999988888776543 589999999999998732110 00 01223489
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++|+|+++..++... .+...|+.+++.+++.
T Consensus 206 ~~~dva~~~~~~l~~~---~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 206 TPEQIAAVIAFLLSDE---AQAITGASIPVDGGVA 237 (239)
T ss_pred CHHHHHHHHHHHhCcc---cccccceEEEecCCEe
Confidence 9999999999888621 1245688999888753
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-20 Score=175.17 Aligned_cols=217 Identities=16% Similarity=0.130 Sum_probs=150.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||+++++.|+++| ++|++++|+.......... +.. ...++..+.+|++|.+++.++++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG-FPVALGARRVEKCEELVDK---IRA--DGGEAVAFPLDVTDPDSVKSFVAQAE 82 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5899988865311000000 000 12357788999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ..+++...+++|+.++.++++++.+ .+..++|++||...|..
T Consensus 83 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~---------- 152 (274)
T PRK07775 83 EALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQ---------- 152 (274)
T ss_pred HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCC----------
Confidence 4799999999432 1133456679999999999988753 34568999999877621
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc----HHHHHHHhcCCCceEEecCCCcc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL----VPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~----~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
..+...|+.+|+..|.+++.++.. .|++++++|||.+.++..... +..+...... .+ +...
T Consensus 153 -----~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~------~~-~~~~ 220 (274)
T PRK07775 153 -----RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK------WG-QARH 220 (274)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH------hc-cccc
Confidence 123467999999999999888643 489999999998765522111 1111111111 01 1223
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
..++|++|+|++++.+++ .+ ..+.+||+.=
T Consensus 221 ~~~~~~~dva~a~~~~~~-----~~-~~~~~~~~~~ 250 (274)
T PRK07775 221 DYFLRASDLARAITFVAE-----TP-RGAHVVNMEV 250 (274)
T ss_pred ccccCHHHHHHHHHHHhc-----CC-CCCCeeEEee
Confidence 569999999999999987 22 3456788763
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=174.94 Aligned_cols=206 Identities=17% Similarity=0.092 Sum_probs=144.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++|+ +|++++|++..... +.. ....++..+.+|+.|.+++.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~-------l~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARAD-------FEA-LHPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHH-------HHh-hcCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 467899999999999999999999995 99999997641100 111 112467889999999999887765
Q ss_pred ----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+.... ..++...+++|+.|+.++++++. +.+.+++|++||.+.+.
T Consensus 74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~----------- 142 (277)
T PRK06180 74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI----------- 142 (277)
T ss_pred HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC-----------
Confidence 47999999994321 12345678999999999999854 44567999999986652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-------cHHHHHHHhcCCCceEEecCC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-------~~~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.+.++.... ...................
T Consensus 143 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (277)
T PRK06180 143 ----TMPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAK-- 216 (277)
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhh--
Confidence 1124578999999999988887643 58999999999998764221 1111111000000000001
Q ss_pred CccccccchhHHHHHHHHHHH
Q 012270 219 ENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~ 239 (467)
....+.+++|+|++++.+++
T Consensus 217 -~~~~~~~~~dva~~~~~~l~ 236 (277)
T PRK06180 217 -SGKQPGDPAKAAQAILAAVE 236 (277)
T ss_pred -ccCCCCCHHHHHHHHHHHHc
Confidence 11345679999999999987
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=168.80 Aligned_cols=228 Identities=20% Similarity=0.179 Sum_probs=175.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|||||||||+|++++++|+++| ++|+++.|++... .... .+++...+|+.++..+..+++|+|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~~~~~-----------~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRAAVRNPEAA-----------AALA-GGVEVVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEEEEeCHHHH-----------Hhhc-CCcEEEEeccCCHhHHHHHhccccEE
Confidence 589999999999999999999999 5999999988621 1122 68999999999999999999999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
+++.+... ... ...........+..+++. .++++++++|...+- ......|..+|..+|
T Consensus 68 ~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~-----------------~~~~~~~~~~~~~~e 126 (275)
T COG0702 68 LLISGLLD-GSD--AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD-----------------AASPSALARAKAAVE 126 (275)
T ss_pred EEEecccc-ccc--chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC-----------------CCCccHHHHHHHHHH
Confidence 99998554 222 222334444455555555 458899999987541 133578999999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccC
Q 012270 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (467)
Q Consensus 169 ~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~ 248 (467)
+.++. .|++++++|+..+|....... .......+.+....+. ...+++.++|++.++..++. .+..
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~i~~~d~a~~~~~~l~-----~~~~ 192 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGAAF---IEAAEAAGLPVIPRGI--GRLSPIAVDDVAEALAAALD-----APAT 192 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccchhH---HHHHHhhCCceecCCC--CceeeeEHHHHHHHHHHHhc-----CCcc
Confidence 99999 789999999877776654332 2233444544443333 37899999999999999998 4557
Q ss_pred CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCC
Q 012270 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284 (467)
Q Consensus 249 ~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip 284 (467)
.+++|.+++++..+..|+.+.+.+..|.+......|
T Consensus 193 ~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~~~~ 228 (275)
T COG0702 193 AGRTYELAGPEALTLAELASGLDYTIGRPVGLIPEA 228 (275)
T ss_pred cCcEEEccCCceecHHHHHHHHHHHhCCcceeeCCc
Confidence 889999999999999999999999999987664433
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=171.16 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=157.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|.........+. +. ....++..+.+|++|.+++.++++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQ---IV--ADGGTAIAVQVDVSDPDSAKAMADATV 78 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999975421000000 00 012356788999999998877654
Q ss_pred ----CCCEEEEcccCCC----------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC
Q 012270 84 ----GASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ----~~D~Vih~aa~~~----------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+|+... +..+++..+++|+.++.++++++... +.+++|++||..+|.
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 150 (250)
T PRK07774 79 SAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL-------- 150 (250)
T ss_pred HHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC--------
Confidence 4799999999432 12335567899999999999998864 356999999987762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCcc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+.+.|+.+|+..|.+++.++++ .|+++++++|+.+..+...... ..+...+..+.+.
T Consensus 151 ----------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~--------- 211 (250)
T PRK07774 151 ----------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPL--------- 211 (250)
T ss_pred ----------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCC---------
Confidence 2468999999999999888654 4799999999998877654322 2233333333221
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
..+.+++|+|++++.++... .+...|++||+.+++.+
T Consensus 212 ~~~~~~~d~a~~~~~~~~~~---~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 212 SRMGTPEDLVGMCLFLLSDE---ASWITGQIFNVDGGQII 248 (250)
T ss_pred CCCcCHHHHHHHHHHHhChh---hhCcCCCEEEECCCeec
Confidence 12456899999999887631 12357889999997654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=171.25 Aligned_cols=234 Identities=15% Similarity=0.023 Sum_probs=155.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| ++|++.+|+........+. +. ....++..+.+|++|.+++.++++
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~~l~~~~~~---l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPGLRQAVNH---LR--AEGFDVHGVMCDVRHREEVTHLADEAF 78 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 56889999999999999999999999 5999999876421000000 00 012357788999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCC-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++. +.+ ..++|++||...+.
T Consensus 79 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~---------- 148 (275)
T PRK05876 79 RLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV---------- 148 (275)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc----------
Confidence 3799999999421 223456788999999999999875 333 46899999987652
Q ss_pred CCcccCCCCCChHHHHHHH----HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQ----AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~----~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|.. +|.+..++.. .|+++++++|+.+.++......................+......+
T Consensus 149 -----~~~~~~~Y~asK~a~~~~~~~l~~e~~~-~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (275)
T PRK05876 149 -----PNAGLGAYGVAKYGVVGLAETLAREVTA-DGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDD 222 (275)
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhhh-cCcEEEEEEeCccccccccchhhhcCcccccccccccccccccccc
Confidence 22345789999997 4444544433 5899999999999877533211000000011111123333344568
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~ 273 (467)
+++++|+|++++.+++ .++.|.+.+ +....++.+.+.+.
T Consensus 223 ~~~~~dva~~~~~ai~---------~~~~~~~~~--~~~~~~~~~~~~~~ 261 (275)
T PRK05876 223 NLGVDDIAQLTADAIL---------ANRLYVLPH--AASRASIRRRFERI 261 (275)
T ss_pred CCCHHHHHHHHHHHHH---------cCCeEEecC--hhhHHHHHHHHHHH
Confidence 9999999999999987 234555543 33444444444443
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-20 Score=173.61 Aligned_cols=231 Identities=14% Similarity=0.060 Sum_probs=156.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+++|+||||+|+||+++++.|+++| ++|++++|+........+. +.......++.++.+|++|.+++..+++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQE---INAEYGEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHHhcCCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 5999999875411000000 1111112358899999999988876654
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++..+++|+.++.++++++.+ .+ -.++|++||.+...
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~----------- 146 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKV----------- 146 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccccc-----------
Confidence 4799999998322 2234567889999998887777654 34 35899999964320
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC-CcHHHHHHHhc--CCCceEEecCCCccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QLVPLLVNLAK--PGWTKFIIGSGENMS 222 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~--~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|++.+.+++.++. ..|+++.++|||.++++... ..++.+..... .+.......++....
T Consensus 147 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
T PRK12384 147 ----GSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLK 222 (259)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCccc
Confidence 112346799999999888887763 37899999999998876432 23333221111 001111122334557
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+++++|++.+++.++... .....|++|++.+++.
T Consensus 223 ~~~~~~dv~~~~~~l~~~~---~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 223 RGCDYQDVLNMLLFYASPK---ASYCTGQSINVTGGQV 257 (259)
T ss_pred CCCCHHHHHHHHHHHcCcc---cccccCceEEEcCCEE
Confidence 8899999999999886521 1235688999998753
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=157.57 Aligned_cols=303 Identities=13% Similarity=0.068 Sum_probs=218.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
...+||||||-|.+|..++..|..+ |...|++-|.....+.. -..-.++..|+.|...+++.+-
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V-------------~~~GPyIy~DILD~K~L~eIVVn~ 109 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANV-------------TDVGPYIYLDILDQKSLEEIVVNK 109 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhh-------------cccCCchhhhhhccccHHHhhccc
Confidence 4568999999999999999988876 54467666543331111 1123567889999999988875
Q ss_pred CCCEEEEccc--CCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 84 GASTVFYVDA--TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 84 ~~D~Vih~aa--~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
.+|-+||+.+ ....+.+.....++|+.|..|+++.|++++. ++..-|+..++|..+. ..| +.+. ....|.+.||
T Consensus 110 RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSP-RNP-TPdl-tIQRPRTIYG 185 (366)
T KOG2774|consen 110 RIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSP-RNP-TPDL-TIQRPRTIYG 185 (366)
T ss_pred ccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCC-CCC-CCCe-eeecCceeec
Confidence 4899999998 3345666777889999999999999999998 5667899999864321 111 1111 1346889999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----C-cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----Q-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-----~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~ 235 (467)
.||..+|-+-+.+..++|+++-++|.+.+...... . .+..|.....+|+. ..+-.++...++.|.+|+-++++
T Consensus 186 VSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~-tCylrpdtrlpmmy~~dc~~~~~ 264 (366)
T KOG2774|consen 186 VSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKH-TCYLRPDTRLPMMYDTDCMASVI 264 (366)
T ss_pred hhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCc-ccccCCCccCceeehHHHHHHHH
Confidence 99999999999888889999999999988865221 1 34455556667765 44556678899999999999999
Q ss_pred HHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 236 ~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
..+.+. .+....++||+++ -..|..|+++.+.+.+..-....++...
T Consensus 265 ~~~~a~---~~~lkrr~ynvt~-~sftpee~~~~~~~~~p~~~i~y~~~sr----------------------------- 311 (366)
T KOG2774|consen 265 QLLAAD---SQSLKRRTYNVTG-FSFTPEEIADAIRRVMPGFEIDYDICTR----------------------------- 311 (366)
T ss_pred HHHhCC---HHHhhhheeeece-eccCHHHHHHHHHhhCCCceeecccchh-----------------------------
Confidence 888753 2334567999998 6899999999998876532111111100
Q ss_pred HHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
+.-.-.+...+|.+.++++..|+-++.+..-+.-+++-.+++...
T Consensus 312 q~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~~~~~n~~~ 356 (366)
T KOG2774|consen 312 QSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVAVHKSNLKL 356 (366)
T ss_pred hhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 001112456789999999999988888888887777777665543
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-19 Score=167.48 Aligned_cols=223 Identities=14% Similarity=0.063 Sum_probs=154.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+++|+||||+|+||++++++|+++| ++|++..|........ . .... ....++..+.+|++|++++..+++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNAKKRAEEMNE--T---LKMVKENGGEGIGVLADVSTREGCETLAKAT 78 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCChHHHHH--H---HHHHHHcCCeeEEEEeccCCHHHHHHHHHHH
Confidence 46899999999999999999999999 4887766543211000 0 0000 012346788899999998877665
Q ss_pred -----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||.... ....+..+++|+.++.++++++.+. ...++|++||...|.
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 146 (252)
T PRK06077 79 IDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR------------ 146 (252)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC------------
Confidence 57999999994221 1123567899999999999988865 235899999987762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+..+.+.|+.+|+..|.+++.++.+. ++.+.+++|+.+.++....... ...... .. ..........++++
T Consensus 147 ---~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~ 218 (252)
T PRK06077 147 ---PAYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFK-VLGMSE-KE---FAEKFTLMGKILDP 218 (252)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhh-cccccH-HH---HHHhcCcCCCCCCH
Confidence 22456789999999999999876543 6899999999998774321110 000000 00 00001122468999
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+|+|++++.+++ .+...|+.|++.+++.
T Consensus 219 ~dva~~~~~~~~-----~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 219 EEVAEFVAAILK-----IESITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHhC-----ccccCCCeEEecCCee
Confidence 999999999986 3556788999999754
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=168.97 Aligned_cols=219 Identities=14% Similarity=0.063 Sum_probs=154.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|++......... +. ...++.++.+|+.|++++.++++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAE---IL---AGGRAIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---Hh---cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 4899999987421110000 01 12457889999999999987765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+++... +.++++..+++|+.++.++.+.+.+ .+.+++|++||...++
T Consensus 77 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 146 (251)
T PRK07231 77 ERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR---------- 146 (251)
T ss_pred HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC----------
Confidence 4699999998421 1234567899999998777776664 5678999999987763
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH----HHHHHhcCCCceEEecCCCc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~----~~~~~~~~g~~~~~~g~g~~ 220 (467)
+..+...|+.+|...+.+++.++.+ .++++++++|+.+.++....... ........ ...
T Consensus 147 -----~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~~ 212 (251)
T PRK07231 147 -----PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLA---------TIP 212 (251)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhc---------CCC
Confidence 2234568999999999888877643 38999999999997664322111 11111111 112
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+++++|+|.+++.++... .....|+.+.+.++.
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~gg~ 248 (251)
T PRK07231 213 LGRLGTPEDIANAALFLASDE---ASWITGVTLVVDGGR 248 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCcc---ccCCCCCeEEECCCc
Confidence 346789999999999988521 123457778887654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=172.03 Aligned_cols=205 Identities=15% Similarity=0.066 Sum_probs=140.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+.... .. ....+++.+.+|++|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~l----------~~-~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-YTVYGAARRVDKM----------ED-LASLGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HH-HHhCCCeEEEeeCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 4999999876411 10 112357889999999999888775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHH----HHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAK----NVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~----~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++. .++..+++.+..++|++||...+.
T Consensus 70 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------- 138 (273)
T PRK06182 70 AEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------- 138 (273)
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC-----------
Confidence 6899999999432 22446778999999854 455566677778999999975421
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce--------EEecC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK--------FIIGS 217 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~--------~~~g~ 217 (467)
+......|+.+|+..+.+.+.++ ...|++++++||+.+.++........+... ..+... .....
T Consensus 139 ----~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 213 (273)
T PRK06182 139 ----YTPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKT-SGNGAYAEQAQAVAASMRS 213 (273)
T ss_pred ----CCCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhccc-ccccchHHHHHHHHHHHHH
Confidence 11123579999999999876554 346899999999999887532111110000 000000 00001
Q ss_pred CCccccccchhHHHHHHHHHHH
Q 012270 218 GENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~ 239 (467)
......+.+++|+|++++.+++
T Consensus 214 ~~~~~~~~~~~~vA~~i~~~~~ 235 (273)
T PRK06182 214 TYGSGRLSDPSVIADAISKAVT 235 (273)
T ss_pred hhccccCCCHHHHHHHHHHHHh
Confidence 1122456789999999999886
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=170.63 Aligned_cols=223 Identities=15% Similarity=0.086 Sum_probs=153.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+ ......++..+.+|+.|++++.++++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~~i~ 76 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG-ARVVVADRDAEAAERVAA------AIAAGGRAFARQGDVGSAEAVEALVDFVA 76 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CeEEEecCCHHHHHHHHH------HHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599999987542110000 00113457889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... ...+++..+++|+.++.++.+++ ++.+.+++|++||...+.
T Consensus 77 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------- 145 (252)
T PRK06138 77 ARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA----------- 145 (252)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc-----------
Confidence 5899999999432 22334567899999997776655 456778999999985542
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce-EEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK-FIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~-~~~g~g~~~~~~ 224 (467)
+..+...|+.+|...+.+++.++.+ .|++++++||+.++++.....+.. ....... ...........+
T Consensus 146 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 217 (252)
T PRK06138 146 ----GGRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFAR----HADPEALREALRARHPMNRF 217 (252)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhcc----ccChHHHHHHHHhcCCCCCC
Confidence 1123468999999999999888644 389999999999998854321110 0000000 000001112247
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
++++|+|++++.+++.. .....|..+.+.++
T Consensus 218 ~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g 248 (252)
T PRK06138 218 GTAEEVAQAALFLASDE---SSFATGTTLVVDGG 248 (252)
T ss_pred cCHHHHHHHHHHHcCch---hcCccCCEEEECCC
Confidence 89999999999988632 12345777777654
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-20 Score=177.13 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=157.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+++++|||||+|+||++++++|+++| ++|++++|........... +. ....++..+.+|++|.+++.++++
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALG-MKLVLADVQQDALDRAVAE---LR--AQGAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHH---HH--hcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999865411000000 00 012357789999999999988776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCCC------CeEEEEcCccccccCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKV------RRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v------~r~v~~SS~~vyg~~~~~ 142 (467)
++|+|||+||... ...++...+++|+.|+.+++++ +.+.+. .++|++||.+.+..
T Consensus 79 ~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---- 154 (287)
T PRK06194 79 ERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA---- 154 (287)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC----
Confidence 3799999999432 2244566789999999997777 344433 58999999877631
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC-----CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
..+...|+.+|+..|.+++.++.+. ++++..+.|+.+..+ +.....+++..+.++
T Consensus 155 -----------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~---------~~~~~~~~~~~~~~~ 214 (287)
T PRK06194 155 -----------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG---------IWQSERNRPADLANT 214 (287)
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc---------cccccccCchhcccC
Confidence 1234689999999999998876533 466677777655332 112223445567788
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~ 278 (467)
+.+.++|++++|.+.++... + .++..|+++.+.+.++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~------------~---------~~s~~dva~~i~~~~~~~~ 254 (287)
T PRK06194 215 APPTRSQLIAQAMSQKAVGS------------G---------KVTAEEVAQLVFDAIRAGR 254 (287)
T ss_pred ccccchhhHHHHHHHhhhhc------------c---------CCCHHHHHHHHHHHHHcCC
Confidence 88899999999988765211 1 1789999999999876543
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=166.86 Aligned_cols=219 Identities=12% Similarity=0.043 Sum_probs=153.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
.+++++||||+|+||++++++|+++| ++|+++.+........... .+. ....++.++.+|++|++++.++++.
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~--~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEG-AKVVINYNSSKEAAENLVN--ELG--KEGHDVYAVQADVSKVEDANRLVEEAV 79 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEcCCcHHHHHHHHH--HHH--hcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5887765432211000000 000 0124688899999999998887764
Q ss_pred -----CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 85 -----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 85 -----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+|+|||+|+... ...+++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 148 (247)
T PRK12935 80 NHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQA----------- 148 (247)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcC-----------
Confidence 799999999422 1245677899999999999999874 3456999999975541
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|...|.+++.++.+ .++++++++|+.+.++...............+ .....+.
T Consensus 149 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~~~ 215 (247)
T PRK12935 149 ----GGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAK---------IPKKRFG 215 (247)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHh---------CCCCCCc
Confidence 1123468999999988887776543 48999999999997764322211112122111 1235689
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+++|+|++++.+++. .....|+.||+.++
T Consensus 216 ~~edva~~~~~~~~~----~~~~~g~~~~i~~g 244 (247)
T PRK12935 216 QADEIAKGVVYLCRD----GAYITGQQLNINGG 244 (247)
T ss_pred CHHHHHHHHHHHcCc----ccCccCCEEEeCCC
Confidence 999999999998862 12357899999986
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=167.09 Aligned_cols=218 Identities=16% Similarity=0.168 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||+|+||++++++|+++|+ +|.++ .|+....... ..... ...++.++.+|++|++++.++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~------~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~ 77 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADET------IREIESNGGKAFLIEADLNSIDGVKKLVEQ 77 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH------HHHHHhcCCcEEEEEcCcCCHHHHHHHHHH
Confidence 358999999999999999999999994 88775 5544210000 00000 12357889999999999887766
Q ss_pred ------------CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCC
Q 012270 84 ------------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 84 ------------~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~ 142 (467)
++|+|||+||.... .......+++|+.++.++++++.+. +.+++|++||..++.
T Consensus 78 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~----- 152 (254)
T PRK12746 78 LKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL----- 152 (254)
T ss_pred HHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC-----
Confidence 48999999984321 1123567789999999999998864 345899999987762
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~ 217 (467)
+..+...|+.+|+..|.+.+.++. ..++++++++|+.+.++...... +.+.......
T Consensus 153 ----------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~-------- 214 (254)
T PRK12746 153 ----------GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNS-------- 214 (254)
T ss_pred ----------CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhc--------
Confidence 123456799999999998777654 36799999999999887543211 1111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.....+++++|+|+++..++... .....|+.|++.++
T Consensus 215 -~~~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 -SVFGRIGQVEDIADAVAFLASSD---SRWVTGQIIDVSGG 251 (254)
T ss_pred -CCcCCCCCHHHHHHHHHHHcCcc---cCCcCCCEEEeCCC
Confidence 11235678999999998877521 12246889999875
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.5e-19 Score=165.83 Aligned_cols=219 Identities=18% Similarity=0.149 Sum_probs=155.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++||||+|+||+++++.|+++| ++|++++|.........+. +... ....++.++.+|+.|++++.++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADG-ADVIVLDIHPMRGRAEADA---VAAGIEAAGGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEcCcccccHHHHHH---HHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999999 4899988754311110000 0000 012467889999999999887764
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH-----hCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~-----~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+++... +..++...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 153 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG------- 153 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC-------
Confidence 4899999999432 223356788999999999999998 456789999999876521
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
..+...|+.+|...+.+++.++.+ .+++++++||+.+.++......+. .......+ ..
T Consensus 154 --------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~--~~~~~~~~---------~~ 214 (249)
T PRK12827 154 --------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT--EHLLNPVP---------VQ 214 (249)
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH--HHHHhhCC---------Cc
Confidence 134568999999999888877643 489999999999999865432211 11111111 12
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+.+++|+|++++.++... .....|+.+++.++
T Consensus 215 ~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~g 247 (249)
T PRK12827 215 RLGEPDEVAALVAFLVSDA---ASYVTGQVIPVDGG 247 (249)
T ss_pred CCcCHHHHHHHHHHHcCcc---cCCccCcEEEeCCC
Confidence 3457899999998887521 23456788888775
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=167.69 Aligned_cols=215 Identities=14% Similarity=0.130 Sum_probs=155.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| ++|++++|++... .......+...+.+|+.|.+++.++++
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g-~~V~~~~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 76 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRG-ARVVAAARNAAAL----------DRLAGETGCEPLRLDVGDDAAIRAALAAAG 76 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HHHHHHhCCeEEEecCCCHHHHHHHHHHhC
Confidence 45799999999999999999999999 4999999976411 011111246678899999998888876
Q ss_pred CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|+|||+|+... ...+++..+++|+.++.++++++.+. + .+++|++||...+.
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 142 (245)
T PRK07060 77 AFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV-------------- 142 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC--------------
Confidence 4899999999432 12345667889999999999988764 2 36899999987652
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEecCCCccccccc
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+..+...|+.+|...|.+++.++.+ .+++++.+||+.++++....... ......... .....+++
T Consensus 143 -~~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 212 (245)
T PRK07060 143 -GLPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA---------IPLGRFAE 212 (245)
T ss_pred -CCCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc---------CCCCCCCC
Confidence 1123468999999999998887643 47999999999999886432111 111111111 12346899
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++|+|++++.++... .....|+.+++.++.
T Consensus 213 ~~d~a~~~~~l~~~~---~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 213 VDDVAAPILFLLSDA---ASMVSGVSLPVDGGY 242 (245)
T ss_pred HHHHHHHHHHHcCcc---cCCccCcEEeECCCc
Confidence 999999999988631 134568899887753
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.5e-19 Score=166.06 Aligned_cols=219 Identities=14% Similarity=0.113 Sum_probs=154.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+.......... +. ....++.++.+|++|.++++++++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAAD---IR--AKGGNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999876421100000 00 012468899999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... ...+++..+++|+.++.++++++. +.+.+++|++||...++..
T Consensus 76 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~--------- 146 (250)
T TIGR03206 76 QALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS--------- 146 (250)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC---------
Confidence 4899999998321 122345679999999999988875 4567899999998776321
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH------HHHHHHhcCCCceEEecCCC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------PLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~------~~~~~~~~~g~~~~~~g~g~ 219 (467)
.....|+.+|++.|.+++.++.+ .+++++++||+.++++...... ..+...+....+
T Consensus 147 ------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 212 (250)
T TIGR03206 147 ------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP-------- 212 (250)
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC--------
Confidence 22457999999998888887654 3899999999999887422111 011112222111
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+...+|+|+++..++.. ......|+++++.++
T Consensus 213 -~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 213 -LGRLGQPDDLPGAILFFSSD---DASFITGQVLSVSGG 247 (250)
T ss_pred -ccCCcCHHHHHHHHHHHcCc---ccCCCcCcEEEeCCC
Confidence 12345689999999997752 123456889999875
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-19 Score=166.52 Aligned_cols=227 Identities=15% Similarity=0.131 Sum_probs=150.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+++||||+|+||+++++.|+++| ++|++++|++......... +........+.++.+|+.|++++.+++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG-GIVIAADIDKEALNELLES---LGKEFKSKKLSLVELDITDQESLEEFLSKSA 78 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHH---HHhhcCCCceeEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999998876421000000 10111123466779999999998887763
Q ss_pred -----CCEEEEcccCCC----------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCC
Q 012270 85 -----ASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 85 -----~D~Vih~aa~~~----------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
+|+|||+|+... ........+++|+.++..+++++. +.+.+++|++||...+.... . .
T Consensus 79 ~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--~-~ 155 (256)
T PRK09186 79 EKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK--F-E 155 (256)
T ss_pred HHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc--c-h
Confidence 799999997321 112345678889888776655544 45678999999976543211 1 1
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
..+.. +......|+.+|...|.+.+.++. ..++++++++|+.++++.... +........ ...
T Consensus 156 ~~~~~--~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~~----~~~~~~~~~---------~~~ 220 (256)
T PRK09186 156 IYEGT--SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEA----FLNAYKKCC---------NGK 220 (256)
T ss_pred hcccc--ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCHH----HHHHHHhcC---------Ccc
Confidence 11222 222334799999999998876554 368999999999887654221 222211111 113
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+++++|+|++++.++... .....|+.+++.++
T Consensus 221 ~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g 253 (256)
T PRK09186 221 GMLDPDDICGTLVFLLSDQ---SKYITGQNIIVDDG 253 (256)
T ss_pred CCCCHHHhhhhHhheeccc---cccccCceEEecCC
Confidence 5789999999999988521 12346777777765
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=160.36 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=152.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||+++++.|+++| ++|+++.|+.......... .+. ....++..+.+|+.|.+++.++++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G-~~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG-ANVVINYASSEAGAEALVA--EIG--ALGGKALAVQGDVSDAESVERAVDEAK 78 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHHH--HHH--hcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 5888887755311000000 000 013467888999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ....++..+++|+.++.++++++... +.+++|++||...+.
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~----------- 147 (248)
T PRK05557 79 AEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLM----------- 147 (248)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCc-----------
Confidence 5799999998422 11234567889999999999888754 567899999974331
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|...|.+++.++. ..+++++++||+.+.++......+.+........+ ...+.
T Consensus 148 ----~~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 214 (248)
T PRK05557 148 ----GNPGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPEDVKEAILAQIP---------LGRLG 214 (248)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChHHHHHHHhcCC---------CCCCc
Confidence 112346799999999988776653 24799999999988665443333333333322221 23467
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+++|+|+++..++... .....|+.|++.++
T Consensus 215 ~~~~va~~~~~l~~~~---~~~~~g~~~~i~~~ 244 (248)
T PRK05557 215 QPEEIASAVAFLASDE---AAYITGQTLHVNGG 244 (248)
T ss_pred CHHHHHHHHHHHcCcc---cCCccccEEEecCC
Confidence 8999999998877521 23457889999875
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-19 Score=170.99 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=155.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+|+||||+|+||++++++|+++| ++|++++|++..... +.... ...++..+.+|++|.+++.++++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLAARTAERLDE-------VAAEIDDLGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHHHHHHhCCceEEEecCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 599999987641100 00101 12457889999999998877664
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+|+... ...+++..+++|+.++..+++++... ...++|++||...+.
T Consensus 76 ~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~--------- 146 (258)
T PRK07890 76 ALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH--------- 146 (258)
T ss_pred HHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc---------
Confidence 4799999998421 22445778999999999999998753 225899999986541
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----------HHHHHhcCCCce
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----------LLVNLAKPGWTK 212 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-----------~~~~~~~~g~~~ 212 (467)
+..+...|+.+|...|.+++.++.+ .+++++++||+.+++|.....+. .+.....+
T Consensus 147 ------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 216 (258)
T PRK07890 147 ------SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAA---- 216 (258)
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhh----
Confidence 2234568999999999999988743 48999999999999986332111 11111111
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
......+.+++|+|.+++.+++.. .....|+.+.+.++.
T Consensus 217 -----~~~~~~~~~~~dva~a~~~l~~~~---~~~~~G~~i~~~gg~ 255 (258)
T PRK07890 217 -----NSDLKRLPTDDEVASAVLFLASDL---ARAITGQTLDVNCGE 255 (258)
T ss_pred -----cCCccccCCHHHHHHHHHHHcCHh---hhCccCcEEEeCCcc
Confidence 112235788999999998887631 134567777776653
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=162.61 Aligned_cols=219 Identities=14% Similarity=0.053 Sum_probs=155.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
..+|+++||||+|+||++++++|+++| ++|++++|+.. . ....++..+.+|+.|.+++.+++++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G-~~v~~~~~~~~------~--------~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQAFL------T--------QEDYPFATFVLDVSDAAAVAQVCQRL 70 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecchh------h--------hcCCceEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 59999998751 0 1124578899999999998887753
Q ss_pred ------CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 85 ------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 85 ------~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+|+|||+++... +..++...+++|+.++.++++++.. .+..++|++||.....
T Consensus 71 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~---------- 140 (252)
T PRK08220 71 LAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV---------- 140 (252)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc----------
Confidence 799999999432 2245677899999999999998753 3456899999975431
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHH--HHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPL--LVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~--~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|...|.+++.++.+ .|+++++++|+.++++........ .......+.. ..........
T Consensus 141 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 214 (252)
T PRK08220 141 -----PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFP-EQFKLGIPLG 214 (252)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHH-HHHhhcCCCc
Confidence 2234578999999999999887754 689999999999999854321110 0000000000 0000112335
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+++++|+|++++.++... .....|++..+.++
T Consensus 215 ~~~~~~dva~~~~~l~~~~---~~~~~g~~i~~~gg 247 (252)
T PRK08220 215 KIARPQEIANAVLFLASDL---ASHITLQDIVVDGG 247 (252)
T ss_pred ccCCHHHHHHHHHHHhcch---hcCccCcEEEECCC
Confidence 6899999999999887521 23556777777765
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=166.88 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=157.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|++|||||+|+||+++++.|+++| ++|++..+...... ..+....+.. ...++..+.+|++|.+++.++++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~i~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREG-ADIALNYLPEEEQD-AAEVVQLIQA--EGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcC-CEEEEEeCCcchHH-HHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 58888776543100 0000000000 12357788999999998877764
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... +.++++..+++|+.++.++++++... .-.++|++||...|..
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~----------- 198 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP----------- 198 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC-----------
Confidence 5899999999421 23456789999999999999999764 2258999999987731
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCCCccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
......|+.+|...+.+++.++.+ .|+++++++||.+.++.... ............ .....+
T Consensus 199 ----~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~---------~p~~r~ 265 (300)
T PRK06128 199 ----SPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSE---------TPMKRP 265 (300)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcC---------CCCCCC
Confidence 123457999999999999887654 58999999999999985321 112222222221 122356
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.+++|+|.+++.++.. ...-..|+.|++.++..+
T Consensus 266 ~~p~dva~~~~~l~s~---~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 266 GQPVEMAPLYVLLASQ---ESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred cCHHHHHHHHHHHhCc---cccCccCcEEeeCCCEeC
Confidence 7899999999987652 012346889999987543
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=160.38 Aligned_cols=205 Identities=14% Similarity=0.049 Sum_probs=143.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+||+++||||+|+||+++++.|+++ + +|++++|+..... . +.+ ..++++++.+|+.|.+++.++++
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~----~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLD----E---LAA--ELPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHH----H---HHH--HhccceEEecCCCCHHHHHHHHHhcC
Confidence 4679999999999999999999998 5 8999999764110 0 000 11357889999999999998887
Q ss_pred CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHH----HHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~----ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++|+|||+++.... ..++...+++|+.++.+ +++++++. .+++|++||...++.
T Consensus 71 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~-------------- 135 (227)
T PRK08219 71 RLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRA-------------- 135 (227)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCc--------------
Confidence 58999999994321 12245568888888544 44445444 468999999876531
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCC-CC-ceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNI-DG-LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~-~g-~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
..+...|+.+|...|.+++.++.. .+ +++..++|+.+.++.... +... .+. ......+++++|+
T Consensus 136 -~~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~----~~~~--~~~-------~~~~~~~~~~~dv 201 (227)
T PRK08219 136 -NPGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG----LVAQ--EGG-------EYDPERYLRPETV 201 (227)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh----hhhh--hcc-------ccCCCCCCCHHHH
Confidence 123468999999999888876532 24 899999998776543211 1110 111 1123468999999
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 231 AHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 231 a~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
|++++.+++ ....+.++++.-
T Consensus 202 a~~~~~~l~------~~~~~~~~~~~~ 222 (227)
T PRK08219 202 AKAVRFAVD------APPDAHITEVVV 222 (227)
T ss_pred HHHHHHHHc------CCCCCccceEEE
Confidence 999999997 334566777764
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=162.74 Aligned_cols=223 Identities=13% Similarity=0.023 Sum_probs=156.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++|+ +|++++|+.......... +. ....++.++.+|++|++++.++++
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~---i~--~~~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAH---LE--ALGIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH---HH--hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 568999999999999999999999995 999999875411000000 00 012357789999999999876654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ....++..+++|+.++.++++++... +.+++|++||...+.....
T Consensus 85 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~------ 158 (259)
T PRK08213 85 ERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP------ 158 (259)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc------
Confidence 4799999998421 12334567889999999999988654 5679999999866532110
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
...+...|+.+|+..|.+++.++.+ .|+++.+++|+.+-.+.....++.+......+.++ ..+
T Consensus 159 -----~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~~ 224 (259)
T PRK08213 159 -----EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPL---------GRL 224 (259)
T ss_pred -----cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCC---------CCC
Confidence 0123468999999999999887653 57999999999887765444445444443333322 223
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+|+|.++..++... .....|+.+++.++
T Consensus 225 ~~~~~va~~~~~l~~~~---~~~~~G~~~~~~~~ 255 (259)
T PRK08213 225 GDDEDLKGAALLLASDA---SKHITGQILAVDGG 255 (259)
T ss_pred cCHHHHHHHHHHHhCcc---ccCccCCEEEECCC
Confidence 45899999888777421 23456888888775
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=164.18 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=151.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+++++||||+|+||++++++|+++| ++|++ ..|+........+. +. ....++.++.+|++|++++.++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEG-YDIAVNYARSRKAAEETAEE---IE--ALGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHH---HH--hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999 47766 45554311000000 00 012457889999999999887775
Q ss_pred -----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+.... ..+....+++|..++.++++++.+. +.+++|++||...+.
T Consensus 77 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---------- 146 (250)
T PRK08063 77 DEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR---------- 146 (250)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc----------
Confidence 47999999984221 1223457889999999999888753 456999999976541
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|...|.+++.++.+ .|+++++++|+.+..+....+. ..+........ ...
T Consensus 147 -----~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 212 (250)
T PRK08063 147 -----YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKT---------PAG 212 (250)
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCC---------CCC
Confidence 1234568999999999999887643 5899999999999776432110 11211111111 112
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+++++|+|++++.++... .....|+.+++.++..
T Consensus 213 ~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 213 RMVEPEDVANAVLFLCSPE---ADMIRGQTIIVDGGRS 247 (250)
T ss_pred CCcCHHHHHHHHHHHcCch---hcCccCCEEEECCCee
Confidence 4788999999999888621 1235688999888743
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=185.81 Aligned_cols=230 Identities=18% Similarity=0.158 Sum_probs=161.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||+++++.|+++| ++|++++|+.......... +. ...++..+.+|++|.+++.++++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~---l~---~~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAE---LG---GPDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHH---Hh---ccCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 5999999976421000000 11 11368889999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCC-CeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v-~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... +..++...+++|+.++.++++++. +.+. .++|++||...+.
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~---------- 563 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN---------- 563 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC----------
Confidence 5899999999432 224456789999999999977775 3344 6899999986652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc-cCCCCCcHHHHHHHhcCCCce----EEecCCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGDTQLVPLLVNLAKPGWTK----FIIGSGE 219 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~-G~~~~~~~~~~~~~~~~g~~~----~~~g~g~ 219 (467)
+......|+.+|+..|.+++.++.+ .|+++++++|+.+| +.....-..........+... ...+++.
T Consensus 564 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 638 (681)
T PRK08324 564 -----PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARN 638 (681)
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcC
Confidence 1123568999999999999887643 47999999999998 554211000011111112111 1234455
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
...++++++|+|++++.++... .....|++|++.++...
T Consensus 639 ~l~~~v~~~DvA~a~~~l~s~~---~~~~tG~~i~vdgG~~~ 677 (681)
T PRK08324 639 LLKREVTPEDVAEAVVFLASGL---LSKTTGAIITVDGGNAA 677 (681)
T ss_pred CcCCccCHHHHHHHHHHHhCcc---ccCCcCCEEEECCCchh
Confidence 6778999999999999987310 24567889999987543
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-18 Score=161.22 Aligned_cols=160 Identities=15% Similarity=0.107 Sum_probs=127.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++++++||||+|+||++++++|+++| ++|++++|++... ....+++++.+|++|++++.+++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~-------------~~~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAG-YRVFGTSRNPARA-------------APIPGVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCChhhc-------------cccCCCeeEEeecCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 5999999976411 1124678999999999999888763
Q ss_pred -----CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 85 -----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 85 -----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+|+|||+||... ..++++..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 69 ~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 137 (270)
T PRK06179 69 ARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL----------- 137 (270)
T ss_pred HhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC-----------
Confidence 799999999432 22345778999999999998885 556788999999976552
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGD 195 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~ 195 (467)
+......|+.+|...|.+.+.++. ..|+++++++|+.+.++..
T Consensus 138 ----~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 138 ----PAPYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 112346899999999998887643 3689999999999988743
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=163.52 Aligned_cols=220 Identities=13% Similarity=0.057 Sum_probs=148.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+++++||||+|+||++++++|+++| +.|++.++........... .+. ....++.++.+|++|.+++.++++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G-~~vv~~~~~~~~~~~~~~~--~l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERG-YAVCLNYLRNRDAAEAVVQ--AIR--RQGGEALAVAADVADEADVLRLFEAVDR 76 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CeEEEecCCCHHHHHHHHH--HHH--hCCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 4787776433210000000 000 012357789999999998887765
Q ss_pred ---CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhCC-------CCeEEEEcCccccccCCCCCCC
Q 012270 84 ---GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK-------VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ---~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~~-------v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
.+|+|||+|+... ..+++...+++|+.++.++++++...- -.++|++||...+...
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------ 150 (248)
T PRK06123 77 ELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS------ 150 (248)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC------
Confidence 5799999999432 112345789999999999988876531 1369999997554110
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEecCCCcc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+ .....|+.+|+..|.+++.++.+ .|++++++||+.++||... ...+..........+.
T Consensus 151 -------~-~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~--------- 213 (248)
T PRK06123 151 -------P-GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPM--------- 213 (248)
T ss_pred -------C-CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCC---------
Confidence 0 11135999999999988877543 4899999999999998532 2223333333322221
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.-+.+++|++++++.++... .....|+.|++.++
T Consensus 214 ~~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~gg 247 (248)
T PRK06123 214 GRGGTAEEVARAILWLLSDE---ASYTTGTFIDVSGG 247 (248)
T ss_pred CCCcCHHHHHHHHHHHhCcc---ccCccCCEEeecCC
Confidence 12346899999999887521 12356889999875
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=159.66 Aligned_cols=222 Identities=14% Similarity=0.043 Sum_probs=153.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||+++++.|+++| ++|+++++........... .+. ....++..+.+|++|.+++.++++
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHG-FDVAVHYNRSRDEAEALAA--EIR--ALGRRAVALQADLADEAEVRALVARA 81 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHH--hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 356799999999999999999999999 5888876643211000000 000 013457889999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ...+++.++++|+.++.++++++... +-.++|++||...+.
T Consensus 82 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~---------- 151 (258)
T PRK09134 82 SAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN---------- 151 (258)
T ss_pred HHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC----------
Confidence 3799999998422 22345778999999999999988764 235788888865441
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|...|.+.+.++.+. +++++.++||.+...... ....+.. ...+.+ . ....
T Consensus 152 -----~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-~~~~~~~-~~~~~~---~------~~~~ 215 (258)
T PRK09134 152 -----LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-SPEDFAR-QHAATP---L------GRGS 215 (258)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-ChHHHHH-HHhcCC---C------CCCc
Confidence 11122479999999999998876532 389999999988765322 1122221 111111 1 1246
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCH
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~ 263 (467)
+++|+|++++.+++ .+...|+.|++.++..+++
T Consensus 216 ~~~d~a~~~~~~~~-----~~~~~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 216 TPEEIAAAVRYLLD-----APSVTGQMIAVDGGQHLAW 248 (258)
T ss_pred CHHHHHHHHHHHhc-----CCCcCCCEEEECCCeeccc
Confidence 79999999999998 4567889999998765544
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=164.04 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=123.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|.++| ++|++++|++... . .....+++.+.+|++|.+++.++++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G-~~Vi~~~r~~~~~----------~-~l~~~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDG-WRVFATCRKEEDV----------A-ALEAEGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHH----------H-HHHHCCceEEEccCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999 5999999976411 0 1112357889999999988876654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHH----HHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g----~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ..++.+..+++|+.| +.++++.+++.+..++|++||...+.
T Consensus 71 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~---------- 140 (277)
T PRK05993 71 ELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV---------- 140 (277)
T ss_pred HHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC----------
Confidence 3799999998432 112345689999999 66677777777888999999975431
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGP 193 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~ 193 (467)
+..+...|+.+|+..|.+.+.++ ...|+++++++||.+-.+
T Consensus 141 -----~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 141 -----PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred -----CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 22345689999999999988764 336899999999988655
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=161.63 Aligned_cols=217 Identities=13% Similarity=0.052 Sum_probs=154.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
..++++||||+|+||+++++.|+++| +.|++++|+........+. .. ....++..+.+|++|++++.++++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAE---CG--ALGTEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 4899999876421100000 00 013467889999999988776654
Q ss_pred ----CCCEEEEcccCCC----------------CCCChhhHHHhhHHHHHHHHHHHHh----C-CCCeEEEEcCcccccc
Q 012270 84 ----GASTVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFD 138 (467)
Q Consensus 84 ----~~D~Vih~aa~~~----------------~~~~~~~~~~~nv~g~~~ll~aa~~----~-~v~r~v~~SS~~vyg~ 138 (467)
++|+|||+|+... ...++..++++|+.++.++.+++.. . .-.++|++||...|+.
T Consensus 78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~ 157 (253)
T PRK08217 78 EDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN 157 (253)
T ss_pred HHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC
Confidence 3799999998322 1123456788999999877765443 2 2247999999876631
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEe
Q 012270 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (467)
Q Consensus 139 ~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~ 215 (467)
.+...|+.+|+..|.+++.++.+ .+++++.++|+.+.++......+..........+
T Consensus 158 ----------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---- 217 (253)
T PRK08217 158 ----------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIP---- 217 (253)
T ss_pred ----------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCC----
Confidence 23468999999999998887643 5899999999999887654433444433333221
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+.+++|+|+++..+++ .....|++|++.++.
T Consensus 218 -----~~~~~~~~~~a~~~~~l~~-----~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 218 -----VGRLGEPEEIAHTVRFIIE-----NDYVTGRVLEIDGGL 251 (253)
T ss_pred -----cCCCcCHHHHHHHHHHHHc-----CCCcCCcEEEeCCCc
Confidence 2346789999999999886 345688999998863
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=159.62 Aligned_cols=225 Identities=15% Similarity=0.094 Sum_probs=154.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||+|.||++++++|.++| ++|++++|+.... ...++.++.+|+.|.+++.++++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~r~~~~~--------------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAG-ARVVTTARSRPDD--------------LPEGVEFVAADLTTAEGCAAVARA 70 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCC-CEEEEEeCChhhh--------------cCCceeEEecCCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 5999999976411 12357889999999998776543
Q ss_pred ------CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|+|||+|+... ..++++..+++|+.++.++.+++. +.+..++|++||...+..
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------ 144 (260)
T PRK06523 71 VLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP------ 144 (260)
T ss_pred HHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC------
Confidence 4799999998321 224467789999999988766553 445678999999866421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCC-----Cce-EEe
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG-----WTK-FII 215 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g-----~~~-~~~ 215 (467)
...+...|+.+|+..|.+++.++.+ .|+++.+++|+.+.++........+....... ..+ ...
T Consensus 145 --------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (260)
T PRK06523 145 --------LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSL 216 (260)
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 1124568999999999998887643 47999999999998875332211111000000 000 000
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
.+.....+..++|+|.++..++... .....|+.+.+.++...|
T Consensus 217 -~~~p~~~~~~~~~va~~~~~l~s~~---~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 217 -GGIPLGRPAEPEEVAELIAFLASDR---AASITGTEYVIDGGTVPT 259 (260)
T ss_pred -ccCccCCCCCHHHHHHHHHHHhCcc---cccccCceEEecCCccCC
Confidence 0011223567899999999887521 235678899998875443
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=165.67 Aligned_cols=221 Identities=12% Similarity=0.055 Sum_probs=156.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|........... .+. ....++.++.+|+.|.+++.++++
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQ--RVE--KEGVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHH--HHH--hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5999998865311000000 000 112357789999999998877764
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... +.+++...+++|+.++.++++++... ...++|++||...|...
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~---------- 189 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN---------- 189 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC----------
Confidence 4799999998421 11234678999999999999998764 23589999998877321
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
.....|+.+|...+.+++.++.+ .|++++.++|+.++.+..... ......... .......+.
T Consensus 190 -----~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~---------~~~~~~~~~ 255 (290)
T PRK06701 190 -----ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFG---------SNTPMQRPG 255 (290)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHHH---------hcCCcCCCc
Confidence 12347999999999998888754 489999999999988743221 111111111 112235678
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++... .....|+.+++.++.
T Consensus 256 ~~~dva~~~~~ll~~~---~~~~~G~~i~idgg~ 286 (290)
T PRK06701 256 QPEELAPAYVFLASPD---SSYITGQMLHVNGGV 286 (290)
T ss_pred CHHHHHHHHHHHcCcc---cCCccCcEEEeCCCc
Confidence 9999999999988631 234578899998763
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=160.32 Aligned_cols=220 Identities=14% Similarity=0.111 Sum_probs=155.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|.||+++++.|+++|+ +|++++|++......... +. ....++..+.+|++|++++.++++
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAA---LE--AAGGRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 468999999999999999999999995 899998865411100000 00 012468889999999999887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... ...+++..++.|+.++.++++++... +..++|++||...+.
T Consensus 80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 148 (250)
T PRK12939 80 AALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW----------- 148 (250)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-----------
Confidence 5899999999432 12334567889999999999988653 345999999976542
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..|.+++.++.+ .+++++.++|+.+..+....... .+......+ .....+
T Consensus 149 ----~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 215 (250)
T PRK12939 149 ----GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLKG---------RALERL 215 (250)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHhc---------CCCCCC
Confidence 1123457999999999999877533 57999999999987765332111 222222221 223567
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++++|+|++++.++... .....|+.+++.++.
T Consensus 216 ~~~~dva~~~~~l~~~~---~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 216 QVPDDVAGAVLFLLSDA---ARFVTGQLLPVNGGF 247 (250)
T ss_pred CCHHHHHHHHHHHhCcc---ccCccCcEEEECCCc
Confidence 89999999999998631 124578899888863
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-18 Score=160.38 Aligned_cols=203 Identities=16% Similarity=0.118 Sum_probs=144.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+++++||||+|+||+++++.|+++| ++|++++|++.......+. +.. ...++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQE---LAD--HGGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 5999999875421100000 111 12467889999999999887765
Q ss_pred ---CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+++... ..+.+...+++|+.++.++++++... +.+++|++||...+.
T Consensus 75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~------------ 142 (263)
T PRK06181 75 RFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT------------ 142 (263)
T ss_pred HcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC------------
Confidence 5899999998422 11224567999999999999998642 357899999987763
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+..+...|+.+|...|.+.+.++. ..++++++++|+.+..+....... ..+.+. ...+....++++
T Consensus 143 ---~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~------~~~~~~--~~~~~~~~~~~~ 211 (263)
T PRK06181 143 ---GVPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALD------GDGKPL--GKSPMQESKIMS 211 (263)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcc------cccccc--ccccccccCCCC
Confidence 123456899999999998876642 358999999999987664322110 112211 112222347899
Q ss_pred hhHHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAE 239 (467)
Q Consensus 227 v~Dva~a~~~al~ 239 (467)
++|+|++++.+++
T Consensus 212 ~~dva~~i~~~~~ 224 (263)
T PRK06181 212 AEECAEAILPAIA 224 (263)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999997
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=153.01 Aligned_cols=208 Identities=17% Similarity=0.048 Sum_probs=148.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|+||++++++|+++| ++|++++|+... . ...+++.+|++|.+++.++++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r~~~~------~----------~~~~~~~~D~~~~~~~~~~~~~~~ 64 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLG-HQVIGIARSAID------D----------FPGELFACDLADIEQTAATLAQIN 64 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCccc------c----------cCceEEEeeCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 599999997651 0 012578899999998887765
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+++... ...++...+++|+.++.++.+++. +.+.+++|++||...|+.
T Consensus 65 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 133 (234)
T PRK07577 65 EIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGA----------- 133 (234)
T ss_pred HhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCC-----------
Confidence 5799999999432 223456788999999888766654 456789999999876621
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEecCCCcccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~---~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
.....|+.+|...|.+++.++. ..|++++++||+.+..+..... .+.......... ....
T Consensus 134 -----~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~~~ 199 (234)
T PRK07577 134 -----LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI---------PMRR 199 (234)
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC---------CCCC
Confidence 1246899999999988877653 2589999999999987643211 111111111111 1122
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...++|+|.+++.++... .....|+.+.+.++.
T Consensus 200 ~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 200 LGTPEEVAAAIAFLLSDD---AGFITGQVLGVDGGG 232 (234)
T ss_pred CcCHHHHHHHHHHHhCcc---cCCccceEEEecCCc
Confidence 457899999999988621 134568888887654
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-18 Score=162.87 Aligned_cols=222 Identities=13% Similarity=0.062 Sum_probs=153.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|........ ........++..+.+|++|.+++.++++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G-~~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHG-AKVCIVDLQDDLGQNV------CDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHH------HHHhcCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999998865311000 0011112468899999999999888776
Q ss_pred ----CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... +.++++.++++|+.++.++++++... +-.++|++||.....
T Consensus 90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~--------- 160 (280)
T PLN02253 90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI--------- 160 (280)
T ss_pred HHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc---------
Confidence 5899999998432 12345789999999999999887643 335799998865421
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH------HHH----HHHhcCCCceE
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------PLL----VNLAKPGWTKF 213 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~------~~~----~~~~~~g~~~~ 213 (467)
+......|+.+|...|.+.+.++.+ .|+++.+++|+.+..+...... ... ......+.+
T Consensus 161 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 232 (280)
T PLN02253 161 ------GGLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNAN-- 232 (280)
T ss_pred ------cCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCC--
Confidence 1112357999999999999887654 4799999999999876421111 011 111111110
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.....++++|+|.+++.++.. ......|+.+++.++...
T Consensus 233 ------l~~~~~~~~dva~~~~~l~s~---~~~~i~G~~i~vdgG~~~ 271 (280)
T PLN02253 233 ------LKGVELTVDDVANAVLFLASD---EARYISGLNLMIDGGFTC 271 (280)
T ss_pred ------CcCCCCCHHHHHHHHHhhcCc---ccccccCcEEEECCchhh
Confidence 012347899999999988751 123456888999887443
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=158.78 Aligned_cols=216 Identities=14% Similarity=0.067 Sum_probs=150.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| ++|++++|+...... ..+. ...++.++.+|++|.+++.++++
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~~~~~~~~~-------~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRERGSK-------VAKA-LGENAWFIAMDVADEAQVAAGVAEVL 79 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEcCCHHHHHH-------HHHH-cCCceEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599999886531100 0000 12357889999999988766543
Q ss_pred ----CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ...+++..+++|+.++.++++++... ...++|++||...+..
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~--------- 150 (255)
T PRK05717 80 GQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS--------- 150 (255)
T ss_pred HHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC---------
Confidence 3799999999432 12335678999999999999999642 2358999999866421
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
......|+.+|+..|.+++.++.+. ++++.+++|+.+.++..... ...+........ ....+
T Consensus 151 ------~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~---------~~~~~ 215 (255)
T PRK05717 151 ------EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAEPLSEADHAQH---------PAGRV 215 (255)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccchHHHHHHhhcC---------CCCCC
Confidence 1224579999999999998876554 48999999999998753321 111111111101 11246
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+++|+|.++..++... .....|+.+.+.++
T Consensus 216 ~~~~~va~~~~~l~~~~---~~~~~g~~~~~~gg 246 (255)
T PRK05717 216 GTVEDVAAMVAWLLSRQ---AGFVTGQEFVVDGG 246 (255)
T ss_pred cCHHHHHHHHHHHcCch---hcCccCcEEEECCC
Confidence 78999999998877521 12346778888665
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=157.16 Aligned_cols=220 Identities=14% Similarity=0.086 Sum_probs=153.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC-cCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+++++||||+|+||+++++.|.++| +.|++++|+...... +. ... .....++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~~~~~--~~---~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGNDCAK--DW---FEEYGFTEDQVRLKELDVTDTEECAEALAEIE 75 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcHHHHH--HH---HHHhhccCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999 599999987531000 00 000 0113468899999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... ..++++.++++|+.++.++.+++ ++.+..++|++||...+..
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~---------- 145 (245)
T PRK12824 76 EEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG---------- 145 (245)
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC----------
Confidence 3799999998421 22445678899999999985544 5556779999999866521
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
......|+.+|+..+.+++.++. ..|+++++++|+.+.++......+.+........ ....+.
T Consensus 146 -----~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 211 (245)
T PRK12824 146 -----QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQI---------PMKRLG 211 (245)
T ss_pred -----CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcC---------CCCCCC
Confidence 12345799999999988887753 3579999999999988754332232222222211 123455
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.++|+++++..++... .....|+.+++.++..
T Consensus 212 ~~~~va~~~~~l~~~~---~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 212 TPEEIAAAVAFLVSEA---AGFITGETISINGGLY 243 (245)
T ss_pred CHHHHHHHHHHHcCcc---ccCccCcEEEECCCee
Confidence 6899999998877421 2346789999998754
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-18 Score=161.77 Aligned_cols=211 Identities=12% Similarity=0.047 Sum_probs=138.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-CCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~D 86 (467)
+++++||||+|+||+++++.|+++| +.|++++|++.......+. .. ....++..+.+|+.|++++.+++. ++|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~id 75 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAGVQIAPQVTALRAE---AA--RRGLALRVEKLDLTDAIDRAQAAEWDVD 75 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcceEEEeeCCCHHHHHHHhcCCCC
Confidence 5689999999999999999999999 5999999865311000000 00 112358889999999999998887 799
Q ss_pred EEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCC
Q 012270 87 TVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWK 155 (467)
Q Consensus 87 ~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~ 155 (467)
+|||+|+... ..++....+++|+.++.++.++ +++.+.+++|++||...+. ...
T Consensus 76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~---------------~~~ 140 (257)
T PRK09291 76 VLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLI---------------TGP 140 (257)
T ss_pred EEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhcc---------------CCC
Confidence 9999999432 1223456788899987766554 4556778999999975431 112
Q ss_pred CCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHH
Q 012270 156 FQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 156 ~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
....|+.+|...|.+++.++. ..|++++++||+.+.-+........+..............+.....++++.+|++.
T Consensus 141 ~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
T PRK09291 141 FTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMID 220 (257)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHH
Confidence 346899999999998877653 26899999999877433211111111111101110000011122345578888888
Q ss_pred HHHHHHH
Q 012270 233 AHVCAAE 239 (467)
Q Consensus 233 a~~~al~ 239 (467)
.++..+.
T Consensus 221 ~~~~~l~ 227 (257)
T PRK09291 221 AMVEVIP 227 (257)
T ss_pred HHHHHhc
Confidence 8887765
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=155.13 Aligned_cols=184 Identities=16% Similarity=0.063 Sum_probs=140.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
.+++++||||+|+||+++++.|+++|+..|++++|+.... .+ ...++.++.+|+.|++++.++++.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~----------~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESV----------TD--LGPRVVPLQLDVTDPASVAAAAEAAS 72 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhh----------hh--cCCceEEEEecCCCHHHHHHHHHhcC
Confidence 4679999999999999999999999933899999876511 11 234688999999999999888774
Q ss_pred -CCEEEEcccC-CC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 85 -ASTVFYVDAT-DL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 85 -~D~Vih~aa~-~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
+|+|||+++. .. ..+++...+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~-------------- 138 (238)
T PRK08264 73 DVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV-------------- 138 (238)
T ss_pred CCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc--------------
Confidence 7999999995 21 2244567889999999999998663 4667899999987652
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
+..+...|+.+|...|.+.+.++.+ .+++++++||+.+.++.... . . ...+..+
T Consensus 139 -~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~------------~------~----~~~~~~~ 195 (238)
T PRK08264 139 -NFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAG------------L------D----APKASPA 195 (238)
T ss_pred -CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccccccc------------C------C----cCCCCHH
Confidence 1234568999999999988877643 48999999999886653211 0 0 1146678
Q ss_pred HHHHHHHHHHH
Q 012270 229 NVAHAHVCAAE 239 (467)
Q Consensus 229 Dva~a~~~al~ 239 (467)
|+|++++..++
T Consensus 196 ~~a~~~~~~~~ 206 (238)
T PRK08264 196 DVARQILDALE 206 (238)
T ss_pred HHHHHHHHHHh
Confidence 88888887776
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=158.13 Aligned_cols=220 Identities=18% Similarity=0.142 Sum_probs=154.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|.||++++++|+++| +.|++++|++... ...+. +.. ...++.++.+|++|++++.++++
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~-~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG-AIPVIFGRSAPDD-EFAEE---LRA--LQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEEcCChhhH-HHHHH---HHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5899999876521 00000 000 13468889999999999887775
Q ss_pred -----CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... ..++++..+++|+.++.++.+++... +..++|++||...+.
T Consensus 78 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------ 145 (258)
T PRK08628 78 VAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT------------ 145 (258)
T ss_pred HHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc------------
Confidence 4799999999321 11345678899999999998887642 346899999986641
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHH------HHHHhcCCCceEEecCCCc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPL------LVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~------~~~~~~~g~~~~~~g~g~~ 220 (467)
+..+...|+.+|+..|.+++.++. ..+++++.+||+.++++.....+.. ......... + .+
T Consensus 146 ---~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~-~~-- 215 (258)
T PRK08628 146 ---GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKI----P-LG-- 215 (258)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcC----C-cc--
Confidence 113456899999999999998764 3589999999999998742211110 001111100 0 01
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..++.++|+|++++.++... .....|+.+.+.++
T Consensus 216 -~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~gg 249 (258)
T PRK08628 216 -HRMTTAEEIADTAVFLLSER---SSHTTGQWLFVDGG 249 (258)
T ss_pred -ccCCCHHHHHHHHHHHhChh---hccccCceEEecCC
Confidence 24678999999999988621 23456788888764
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=157.74 Aligned_cols=219 Identities=13% Similarity=0.092 Sum_probs=153.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++++++||||+|+||.++++.|+++| ++|+++ +|++......... +.. ...++.++.+|++|++++.++++
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYDINEEAAQELLEE---IKE--EGGDAIAVKADVSSEEDVENLVEQI 77 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHH---HHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999 488888 8865411000000 000 12458889999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+++... ..++++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 78 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~--------- 148 (247)
T PRK05565 78 VEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG--------- 148 (247)
T ss_pred HHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC---------
Confidence 6899999999432 1233567889999998888887764 35678999999866521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
......|+.+|...+.+++.++.. .|++++++||+.+..+..+...+......... .....+
T Consensus 149 ------~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~~ 213 (247)
T PRK05565 149 ------ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAEE---------IPLGRL 213 (247)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHHHhc---------CCCCCC
Confidence 122357999999888877776543 58999999999997765443322222111110 112346
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..++|+|++++.++... .....|+.+++.++
T Consensus 214 ~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~~ 244 (247)
T PRK05565 214 GKPEEIAKVVLFLASDD---ASYITGQIITVDGG 244 (247)
T ss_pred CCHHHHHHHHHHHcCCc---cCCccCcEEEecCC
Confidence 78899999999887532 24567888888875
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=156.70 Aligned_cols=217 Identities=18% Similarity=0.172 Sum_probs=154.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||+++++.|+++| ++|++++|+.... + ........++..+.+|++|++++.++++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G-~~Vi~~~r~~~~~----~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKG-ARVALLDRSEDVA----E----VAAQLLGGNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH----H----HHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999876411 0 0011122456789999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... ...+++..+++|+.++.++++++.. .+.+++|++||.....
T Consensus 85 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 153 (255)
T PRK06841 85 SAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV----------- 153 (255)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc-----------
Confidence 4799999999432 1234556899999999999998765 3567999999975431
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|...|.+.+.++.+ .|+++..++|+.+..+....... ........+ .....+
T Consensus 154 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 220 (255)
T PRK06841 154 ----ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKKL---------IPAGRF 220 (255)
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHhc---------CCCCCC
Confidence 1123457999999999888887654 48999999999997764322111 111111111 123457
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+++|+|++++.++... .....|+.+.+.++.
T Consensus 221 ~~~~~va~~~~~l~~~~---~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 221 AYPEEIAAAALFLASDA---AAMITGENLVIDGGY 252 (255)
T ss_pred cCHHHHHHHHHHHcCcc---ccCccCCEEEECCCc
Confidence 89999999999988621 234578888888764
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=155.97 Aligned_cols=217 Identities=19% Similarity=0.115 Sum_probs=151.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++++++||||+|+||+++++.|+++| ++|++..+...... +. +.... ..++..+.+|+.|++++.+++++
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G-~~vv~~~~~~~~~~---~~---~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREG-ARVVVNYHQSEDAA---EA---LADEL-GDRAIALQADVTDREQVQAMFATAT 75 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC-CeEEEEcCCCHHHH---HH---HHHHh-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 58877655332100 00 00111 14678899999999988877653
Q ss_pred ------CCEEEEcccCCC-------------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCC
Q 012270 85 ------ASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSH 141 (467)
Q Consensus 85 ------~D~Vih~aa~~~-------------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~ 141 (467)
+|+|||+|+... +..++...+++|+.++.++++++.. .+..++|++||.... .
T Consensus 76 ~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~--~-- 151 (253)
T PRK08642 76 EHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ--N-- 151 (253)
T ss_pred HHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc--C--
Confidence 899999997421 1123456799999999999999863 355789999986332 0
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecC
Q 012270 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 142 ~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~ 217 (467)
+..+.+.|+.+|...|.+++.++.+ .|+++..++||.+-.+..... -+..........
T Consensus 152 -----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~------- 213 (253)
T PRK08642 152 -----------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATT------- 213 (253)
T ss_pred -----------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcC-------
Confidence 2234568999999999999998654 579999999998866532111 122222222211
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+.+++|+|.+++.++... .....|+.+.+.++
T Consensus 214 --~~~~~~~~~~va~~~~~l~~~~---~~~~~G~~~~vdgg 249 (253)
T PRK08642 214 --PLRKVTTPQEFADAVLFFASPW---ARAVTGQNLVVDGG 249 (253)
T ss_pred --CcCCCCCHHHHHHHHHHHcCch---hcCccCCEEEeCCC
Confidence 1235788999999999888521 24577888888876
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=156.75 Aligned_cols=191 Identities=14% Similarity=0.110 Sum_probs=139.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC---
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 84 (467)
+|+++||||+|+||+++++.|+++| ++|++++|+........+. +. ...++.++.+|++|++++.++++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~---~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 74 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAAR---LP---KAARVSVYAADVRDADALAAAAADFIA 74 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh---cc---cCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999 5999999876421100000 11 112688999999999998877653
Q ss_pred ----CCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHH----HHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 85 ----ASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 85 ----~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~----aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+|++||+||... ..++++.++++|+.++.++++ ++++.+..++|++||...+.
T Consensus 75 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~----------- 143 (257)
T PRK07024 75 AHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR----------- 143 (257)
T ss_pred hCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC-----------
Confidence 799999999432 113456789999999999777 55566678999999976541
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|+..|.+.+.++ ...|++++++||+.+.++.... ... .....+
T Consensus 144 ----~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----------~~~---------~~~~~~ 200 (257)
T PRK07024 144 ----GLPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH----------NPY---------PMPFLM 200 (257)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc----------CCC---------CCCCcc
Confidence 11234579999999999987764 4468999999999998763211 000 001135
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
.++|+|+.++.+++
T Consensus 201 ~~~~~a~~~~~~l~ 214 (257)
T PRK07024 201 DADRFAARAARAIA 214 (257)
T ss_pred CHHHHHHHHHHHHh
Confidence 79999999999987
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=154.56 Aligned_cols=216 Identities=16% Similarity=0.106 Sum_probs=149.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC------
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG------ 84 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~------ 84 (467)
++|||++|+||+++++.|+++| ++|++++|+.......... .+. ....++..+.+|++|.+++.+++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG-AKVIITYRSSEEGAEEVVE--ELK--AYGVKALGVVCDVSDREDVKAVVEEIEEELG 75 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHHH--HHH--hcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999 5999998865211000000 000 0123578899999999998877653
Q ss_pred -CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 85 -ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 85 -~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
+|+|||+++... ...+++..+++|+.++.++++++.. .+.++++++||.+.+...
T Consensus 76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~------------- 142 (239)
T TIGR01830 76 PIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN------------- 142 (239)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC-------------
Confidence 699999999432 1234577899999999999998875 356799999997543211
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
.+...|+.+|...|.+++.++.+ .|++++++||+.+.++......+.....+....+ ...+.+++|
T Consensus 143 --~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 211 (239)
T TIGR01830 143 --AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIP---------LGRFGTPEE 211 (239)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCC---------cCCCcCHHH
Confidence 13467999999999887776543 5899999999988766433222222222222211 123667999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+|++++.++.. ......|+.||+.++
T Consensus 212 ~a~~~~~~~~~---~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 212 VANAVAFLASD---EASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHhCc---ccCCcCCCEEEeCCC
Confidence 99999988742 123457889999764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=154.75 Aligned_cols=215 Identities=15% Similarity=0.126 Sum_probs=147.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........ .+ ...++.++++|+.|.+++..+++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEG-ARVAITGRDPASLEAAR------AE--LGESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCHHHHHHHH------HH--hCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 59999998653110000 00 02357788999999887665543
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCcc-ccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTAD-VVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~-vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... ...+++..+++|+.++.++++++... ...++|++||.. .|+
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~------------ 143 (249)
T PRK06500 76 EAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG------------ 143 (249)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC------------
Confidence 5899999998422 22445678999999999999999752 234777777743 331
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
......|+.+|+..|.+++.++.+ .|++++++||+.+++|... .....+.+.+..+.+.
T Consensus 144 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 211 (249)
T PRK06500 144 ----MPNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPL-------- 211 (249)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCC--------
Confidence 123468999999999999776532 4899999999999987421 1122233333322221
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.-+..++|+|++++.++... .....|....+.++
T Consensus 212 -~~~~~~~~va~~~~~l~~~~---~~~~~g~~i~~~gg 245 (249)
T PRK06500 212 -GRFGTPEEIAKAVLYLASDE---SAFIVGSEIIVDGG 245 (249)
T ss_pred -CCCcCHHHHHHHHHHHcCcc---ccCccCCeEEECCC
Confidence 12457899999999887521 12345666666654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=157.25 Aligned_cols=219 Identities=16% Similarity=0.076 Sum_probs=145.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
|++++||||+|+||++++++|+++|+ +|+++ .|++......... +. ....++..+.+|+.|++++.+++++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~D~~d~~~i~~~~~~~~ 74 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGY-TVAVNYQQNLHAAQEVVNL---IT--QAGGKAFVLQADISDENQVVAMFTAID 74 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHH---HH--hCCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999994 88764 4543210000000 00 0123578899999999998887653
Q ss_pred -----CCEEEEcccCCCC--------CCChhhHHHhhHHHHHHHHHHHHhCC-------CCeEEEEcCccccccCCCCCC
Q 012270 85 -----ASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACRECK-------VRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 85 -----~D~Vih~aa~~~~--------~~~~~~~~~~nv~g~~~ll~aa~~~~-------v~r~v~~SS~~vyg~~~~~~~ 144 (467)
+|+|||+++.... ..+++..+++|+.++.++++++...- -.++|++||...+...
T Consensus 75 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----- 149 (247)
T PRK09730 75 QHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----- 149 (247)
T ss_pred HhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----
Confidence 6899999994311 12345789999999988877665431 2469999998654211
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCCc
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+ .....|+.+|...|.+++.++.+ .+++++++||+.+|+|.... ..+..........+.
T Consensus 150 --------~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~-------- 212 (247)
T PRK09730 150 --------P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPM-------- 212 (247)
T ss_pred --------C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCC--------
Confidence 0 11246999999999988876532 58999999999999986432 122222222222211
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+++|+|++++.++... .....|+.|.+.++
T Consensus 213 -~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~g~ 246 (247)
T PRK09730 213 -QRGGQPEEVAQAIVWLLSDK---ASYVTGSFIDLAGG 246 (247)
T ss_pred -CCCcCHHHHHHHHHhhcChh---hcCccCcEEecCCC
Confidence 11236899999999887521 12356777877664
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=156.83 Aligned_cols=198 Identities=12% Similarity=0.012 Sum_probs=138.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+++++||||+|+||+++++.|+++| ++|++++|+.... .. ....+++.+.+|+.|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r~~~~~----------~~-~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRG-YRVLAACRKPDDV----------AR-MNSLGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHh----------HH-HHhCCCeEEEeecCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 5999999876411 11 112357889999999988766543
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHH----HHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~l----l~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|.+||+++... ..++++..+++|+.|+.++ ++++++.+.+++|++||...+ .
T Consensus 70 ~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~--~--------- 138 (256)
T PRK08017 70 LTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGL--I--------- 138 (256)
T ss_pred hcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccc--c---------
Confidence 3689999998422 2233457889999988775 667777788899999997443 1
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhh---cCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFA---NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~---~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|...|.+.+.+ ....+++++++||+.+..+... .... ..... .....+...+.++
T Consensus 139 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~----~~~~-~~~~~--~~~~~~~~~~~~~ 207 (256)
T PRK08017 139 ----STPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTD----NVNQ-TQSDK--PVENPGIAARFTL 207 (256)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhh----cccc-hhhcc--chhhhHHHhhcCC
Confidence 1133568999999999877653 2346899999999876543211 1100 01111 1112223335689
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
+++|+|+++..+++
T Consensus 208 ~~~d~a~~~~~~~~ 221 (256)
T PRK08017 208 GPEAVVPKLRHALE 221 (256)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999997
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=152.70 Aligned_cols=210 Identities=13% Similarity=0.079 Sum_probs=148.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++|+||||+|+||++++++|+++| ++|++++|++.......+. +. ...++..+.+|+.|.+++.++++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~---l~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAE---LN---NKGNVLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHH---Hh---ccCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5899999976421100000 11 11468889999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+++... ..++....+++|+.++.++++++.+. +.+++|++||...+.
T Consensus 78 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------ 145 (237)
T PRK07326 78 AAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN------------ 145 (237)
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc------------
Confidence 5899999998432 12334578999999999999888653 456899999976541
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+..+...|+.+|+..+.+.+.++ ...|++++++||+.+..+..... .. . .....+.
T Consensus 146 ---~~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~---------~~-------~--~~~~~~~ 204 (237)
T PRK07326 146 ---FFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT---------PS-------E--KDAWKIQ 204 (237)
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc---------cc-------h--hhhccCC
Confidence 12334679999999888887764 33689999999998876532110 00 0 0011367
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
++|+|++++.++.. ++........+..+++
T Consensus 205 ~~d~a~~~~~~l~~----~~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 205 PEDIAQLVLDLLKM----PPRTLPSKIEVRPSRP 234 (237)
T ss_pred HHHHHHHHHHHHhC----CccccccceEEecCCC
Confidence 89999999999874 2334455666655444
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=151.76 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=150.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|.||++++++|+++| ++|++++|+... ..++..+.+|++|++++.++++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G-~~Vi~~~r~~~~----------------~~~~~~~~~D~~~~~~i~~~~~~~ 66 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEG-SNVINFDIKEPS----------------YNDVDYFKVDVSNKEQVIKGIDYV 66 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCccc----------------cCceEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599999886541 1257889999999998887764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 67 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 136 (258)
T PRK06398 67 ISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA---------- 136 (258)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc----------
Confidence 4899999998421 2234567789999999999887754 3567999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcH-------HH-HHHHhcCCCceEEecC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV-------PL-LVNLAKPGWTKFIIGS 217 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~-------~~-~~~~~~~g~~~~~~g~ 217 (467)
+..+...|+.+|+..|.+.+.++.+. +++++.++||.+-.+...... +. ...... ..+.
T Consensus 137 -----~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 205 (258)
T PRK06398 137 -----VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIR------EWGE 205 (258)
T ss_pred -----CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHH------hhhh
Confidence 22345689999999999998876443 389999999988654211100 00 000000 0011
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
......+..++|+|++++.++... .....|+.+.+.++
T Consensus 206 ~~~~~~~~~p~eva~~~~~l~s~~---~~~~~G~~i~~dgg 243 (258)
T PRK06398 206 MHPMKRVGKPEEVAYVVAFLASDL---ASFITGECVTVDGG 243 (258)
T ss_pred cCCcCCCcCHHHHHHHHHHHcCcc---cCCCCCcEEEECCc
Confidence 112234677999999999887521 23457888888776
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-17 Score=153.94 Aligned_cols=217 Identities=12% Similarity=0.069 Sum_probs=151.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+..... .+. +.. ...++..+.+|++|.+++.++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~~~~~~--~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGRSEPSET--QQQ---VEA--LGRRFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCchHHHH--HHH---HHh--cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 59999998652100 000 000 12457889999999999876654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... ...+++..+++|+.++.++++++.. .+ ..++|++||...|...
T Consensus 76 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------- 147 (248)
T TIGR01832 76 EEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG-------- 147 (248)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC--------
Confidence 4899999998432 1234567789999999999998764 23 4689999998776321
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
.....|+.+|+..+.+++.++.+ +|+++++++||.+..+...... .......... ....
T Consensus 148 -------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~ 211 (248)
T TIGR01832 148 -------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER---------IPAG 211 (248)
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc---------CCCC
Confidence 12347999999999998888654 4899999999999876432111 0111111110 1124
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++.++|+|++++.++... .....|+.+.+.++
T Consensus 212 ~~~~~~dva~~~~~l~s~~---~~~~~G~~i~~dgg 244 (248)
T TIGR01832 212 RWGTPDDIGGPAVFLASSA---SDYVNGYTLAVDGG 244 (248)
T ss_pred CCcCHHHHHHHHHHHcCcc---ccCcCCcEEEeCCC
Confidence 6888999999999887521 23345777666554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=152.97 Aligned_cols=215 Identities=14% Similarity=0.029 Sum_probs=153.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+++||||+|.||++++++|+++| ++|++++|+... . ....++.++.+|+.|++++.++++.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g-~~v~~~~r~~~~------~-------~~~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAG-ATVVVCGRRAPE------T-------VDGRPAEFHAADVRDPDQVAALVDAIV 70 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCChhh------h-------hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599999997641 0 1124678899999999988877653
Q ss_pred -----CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 85 -----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 85 -----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+|+|||+||... ...+++..+++|+.++.++++++... +..++|++||...+.
T Consensus 71 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------- 140 (252)
T PRK07856 71 ERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR---------- 140 (252)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC----------
Confidence 699999998421 12335678999999999999987652 346899999986541
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|...|.+++.++.+. .++++.++|+.+..+...... +.......... ....
T Consensus 141 -----~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~ 206 (252)
T PRK07856 141 -----PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATV---------PLGR 206 (252)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcC---------CCCC
Confidence 11234689999999999998876542 289999999998766422110 11111111111 1234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
+..++|+|.+++.++... .....|+.+.+.++...+
T Consensus 207 ~~~p~~va~~~~~L~~~~---~~~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 207 LATPADIAWACLFLASDL---ASYVSGANLEVHGGGERP 242 (252)
T ss_pred CcCHHHHHHHHHHHcCcc---cCCccCCEEEECCCcchH
Confidence 567899999999887521 234678888888865443
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=156.06 Aligned_cols=233 Identities=13% Similarity=0.067 Sum_probs=150.6
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l 78 (467)
|.....++++++||||+|+||+++++.|+++| ++|.++++.........+. ..+.+ ...++..+.+|++|++++
T Consensus 1 ~~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G-~~vv~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~D~~~~~~~ 76 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQG-AKAVAIHYNSAASKADAEE---TVAAVKAAGAKAVAFQADLTTAAAV 76 (257)
T ss_pred CCCCCCCCcEEEEECCCchHHHHHHHHHHHCC-CcEEEEecCCccchHHHHH---HHHHHHHhCCcEEEEecCcCCHHHH
Confidence 43323356899999999999999999999999 4766776543211100000 00000 123678899999999998
Q ss_pred HHHHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCC
Q 012270 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 79 ~~~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~ 142 (467)
.++++ ++|++||+|+... ..++++..+++|+.++..+++++... .-.++++++|..+..
T Consensus 77 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~----- 151 (257)
T PRK12744 77 EKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA----- 151 (257)
T ss_pred HHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc-----
Confidence 87765 4799999999421 22346678999999999999988754 124677764332221
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..|.+++.++.+ .|+++++++||.+.++...+. .+....... . .....+
T Consensus 152 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~--~--~~~~~~ 217 (257)
T PRK12744 152 ----------FTPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHK--T--AAALSP 217 (257)
T ss_pred ----------cCCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhccc--c--cccccc
Confidence 0012467999999999999988754 379999999999976632110 011000000 0 000111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.....+.+++|+|.++..+++. .....|+++++.++..
T Consensus 218 ~~~~~~~~~~dva~~~~~l~~~----~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 218 FSKTGLTDIEDIVPFIRFLVTD----GWWITGQTILINGGYT 255 (257)
T ss_pred cccCCCCCHHHHHHHHHHhhcc----cceeecceEeecCCcc
Confidence 1123588999999999999872 1234688999887643
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=161.75 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=128.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||.++++.|+++| ++|++++|+........+. +. ....++.++.+|++|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQE---LG--IPPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---hh--ccCCceEEEEecCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 5999999875421100000 10 112468889999999999887765
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----C--CCeEEEEcCccccccCCCCCC
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----K--VRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----~--v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|+|||+||... +.++++.++++|+.|+.++++++... + ..|+|++||...++.......
T Consensus 78 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~ 157 (322)
T PRK07453 78 RALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKI 157 (322)
T ss_pred HHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCcc
Confidence 3899999999421 22346788999999999998877642 2 359999999877532100000
Q ss_pred ----CCCCC----------------cccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccCC
Q 012270 145 ----NGDET----------------LTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPG 194 (467)
Q Consensus 145 ----~~~E~----------------~p~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G~~ 194 (467)
+.+.+ ...+..|...|+.||...+.+.+.++++ .|++++++|||.|++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 158 PIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 00100 0012356678999999887776666544 47999999999998643
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=153.83 Aligned_cols=198 Identities=16% Similarity=0.081 Sum_probs=138.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
|+|+||||+|+||.+++++|+++| ++|++++|++..... +... ...++..+.+|+.|.+++.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~-~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERLQE-------LKDE-LGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHH-hccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999 599999997641100 0000 12367889999999998877664
Q ss_pred --CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 --GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 --~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||... +.+++...+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 72 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------ 139 (248)
T PRK10538 72 WRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW------------ 139 (248)
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC------------
Confidence 5899999998421 22345678999999966655554 456778999999975431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|...|.+.+.++. ..|+++++++||.+.|+.... .+..-.... .. .+ + ...++
T Consensus 140 ---~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~--~~---~~-~---~~~~~ 207 (248)
T PRK10538 140 ---PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA--EK---TY-Q---NTVAL 207 (248)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHH--Hh---hc-c---ccCCC
Confidence 223456899999999999887753 357999999999998664321 000000000 00 00 0 12356
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
.++|+|++++.++.
T Consensus 208 ~~~dvA~~~~~l~~ 221 (248)
T PRK10538 208 TPEDVSEAVWWVAT 221 (248)
T ss_pred CHHHHHHHHHHHhc
Confidence 89999999999886
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=152.96 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=142.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++|+ +|++++|++......... +. ....++.++.+|+.|++++.++++
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEE---VE--AYGVKVVIATADVSDYEEVTAAIEQLK 79 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---HH--HhCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999995 999999976421100000 11 112468889999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... ...+++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 80 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~----------- 148 (239)
T PRK07666 80 NELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK----------- 148 (239)
T ss_pred HHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc-----------
Confidence 6899999998432 1233467899999999999888763 4677899999986552
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|...+.+++.++. ..|++++++||+.+..+..... .... + ....++
T Consensus 149 ----~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~-------~~~~------~---~~~~~~ 208 (239)
T PRK07666 149 ----GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL-------GLTD------G---NPDKVM 208 (239)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc-------cccc------c---CCCCCC
Confidence 112346799999999888877653 3689999999999877642210 0000 1 112457
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
.++|+|++++.+++
T Consensus 209 ~~~~~a~~~~~~l~ 222 (239)
T PRK07666 209 QPEDLAEFIVAQLK 222 (239)
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999999997
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=153.87 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=153.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.++++|||||+|.||++++++|+++| ++|++++|+........++ +.. ...++..+.+|++|++++.++++
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAELAVAK---LRQ--EGIKAHAAPFNVTHKQEVEAAIEHIE 81 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHH---HHh--cCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999875421110000 000 12356788999999999887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++..+++|+.++.++++++.. .+..++|++||.....
T Consensus 82 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 150 (254)
T PRK08085 82 KDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL----------- 150 (254)
T ss_pred HhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc-----------
Confidence 3799999998421 2344667899999999888887765 3457899999975421
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..|.+++.++.+ .|+++.+++||.+..+...... +.+........ ....
T Consensus 151 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~---------p~~~ 217 (254)
T PRK08085 151 ----GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRT---------PAAR 217 (254)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcC---------CCCC
Confidence 1234568999999999999988643 4899999999999887533211 12222222211 2235
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+...+|+|.+++.++... .....|+...+.++
T Consensus 218 ~~~~~~va~~~~~l~~~~---~~~i~G~~i~~dgg 249 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKA---SDFVNGHLLFVDGG 249 (254)
T ss_pred CcCHHHHHHHHHHHhCcc---ccCCcCCEEEECCC
Confidence 678999999988887521 23457777777665
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-17 Score=151.14 Aligned_cols=201 Identities=12% Similarity=0.077 Sum_probs=143.2
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.+ .+|++++||||+|.||++++++|+++|+ .|++++|++.......+. +. ....++.++.+|++|++++.+
T Consensus 1 ~~~--~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 1 MSL--NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAE---LR--STGVKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred CCC--CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---HH--hCCCcEEEEEccCCCHHHHHH
Confidence 544 3578999999999999999999999994 999999976421100000 00 012468889999999998877
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCC
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~ 142 (467)
+++ ++|+|||+++... ...+++..+++|+.++.++++++. +.+..++|++||...++
T Consensus 73 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----- 147 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN----- 147 (241)
T ss_pred HHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc-----
Confidence 765 4899999998422 123456788999999888887764 34567899999987763
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|...+.+.+.++ ...|++++++||+.+-.+.... .......
T Consensus 148 ----------~~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~-----------~~~~~~~---- 202 (241)
T PRK07454 148 ----------AFPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDT-----------ETVQADF---- 202 (241)
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccc-----------ccccccc----
Confidence 11335689999999999887764 2358999999999987653211 0000000
Q ss_pred ccccccchhHHHHHHHHHHH
Q 012270 220 NMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~ 239 (467)
.....+.++|+|++++.++.
T Consensus 203 ~~~~~~~~~~va~~~~~l~~ 222 (241)
T PRK07454 203 DRSAMLSPEQVAQTILHLAQ 222 (241)
T ss_pred ccccCCCHHHHHHHHHHHHc
Confidence 01235789999999999987
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=156.63 Aligned_cols=220 Identities=12% Similarity=0.045 Sum_probs=153.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||+|+||+++++.|+++| ++|++.+|+..... .++ +.+.. ...++..+.+|++|.+++.++++
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G-~~Vi~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAISYLPVEEED--AQD---VKKIIEECGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEecCCcchhh--HHH---HHHHHHHcCCeEEEEEccCCCHHHHHHHHHH
Confidence 34799999999999999999999999 58988876542100 000 10000 12357788999999988776654
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... +.++++..+++|+.++.++++++... .-.++|++||...+..
T Consensus 122 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~--------- 192 (294)
T PRK07985 122 AHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP--------- 192 (294)
T ss_pred HHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC---------
Confidence 4799999998421 23456789999999999999998764 2258999999877621
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
......|+.+|+..+.+++.++.+ .|+++.+++|+.+.++.... .-........... ...
T Consensus 193 ------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 257 (294)
T PRK07985 193 ------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQT---------PMK 257 (294)
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccC---------CCC
Confidence 122357999999999998887654 58999999999999885311 1111111111111 122
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+..++|+|.+++.++..- .....|+.+.+.++.
T Consensus 258 r~~~pedva~~~~fL~s~~---~~~itG~~i~vdgG~ 291 (294)
T PRK07985 258 RAGQPAELAPVYVYLASQE---SSYVTAEVHGVCGGE 291 (294)
T ss_pred CCCCHHHHHHHHHhhhChh---cCCccccEEeeCCCe
Confidence 4567999999999887521 234568888888763
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-17 Score=152.51 Aligned_cols=220 Identities=18% Similarity=0.113 Sum_probs=150.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++|+ +|+++.|+.........+ .+. ....++.++.+|++|++++.++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVA--EIE--AAGGRAIAVQADVADAAAVTRLFDAAE 78 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHH--HHH--hcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 568999999999999999999999994 887776654211000000 000 112467889999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+|+... ...+++..+++|+.++.++++++.+. ...++|++||...+.
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------- 145 (245)
T PRK12937 79 TAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL------------- 145 (245)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC-------------
Confidence 5899999999432 12345678899999999999888764 235899999875531
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC-CCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD-TQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~-~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+..+...|+.+|...|.+++.++.+ .|+++++++|+.+-.+.. ....+.......... ....+.+
T Consensus 146 --~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 214 (245)
T PRK12937 146 --PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLA---------PLERLGT 214 (245)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcC---------CCCCCCC
Confidence 1234568999999999999887543 479999999998766531 111122222222221 1223557
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
++|+|++++.++... .....|+.+++.++
T Consensus 215 ~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g 243 (245)
T PRK12937 215 PEEIAAAVAFLAGPD---GAWVNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHHHHHcCcc---ccCccccEEEeCCC
Confidence 899999998887521 12456888888764
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-17 Score=154.12 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=151.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|.++.+........... .+. ....++..+.+|++|++++.++++
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQG-FDIGITWHSDEEGAKETAE--EVR--SHGVRAEIRQLDLSDLPEGAQALDKLI 75 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHH--HHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 5888876543211000000 000 012468889999999998877664
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCC-----CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~-----v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+++... ..+++...+++|+.++.++++++...- -.++|++||.....
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---------- 145 (256)
T PRK12743 76 QRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT---------- 145 (256)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC----------
Confidence 4799999998432 223456789999999999999887542 25899999974320
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|...+.+++.++.+ .|++++.++|+.+.++......+........+.+ ...+
T Consensus 146 -----~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~ 211 (256)
T PRK12743 146 -----PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIP---------LGRP 211 (256)
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhcCC---------CCCC
Confidence 2345578999999999998877643 5799999999999987533211111111111111 1124
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+.+|+|.++..++... .....|+.+.+.++.
T Consensus 212 ~~~~dva~~~~~l~~~~---~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 212 GDTHEIASLVAWLCSEG---ASYTTGQSLIVDGGF 243 (256)
T ss_pred CCHHHHHHHHHHHhCcc---ccCcCCcEEEECCCc
Confidence 57899999998887521 123568888888763
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=155.83 Aligned_cols=182 Identities=10% Similarity=0.027 Sum_probs=125.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +.......++.++.+|++|.+++.++++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKG-AHVVLAVRNLDKGKAAAAR---ITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999875421100000 1111113467889999999998887764
Q ss_pred ----CCCEEEEcccCCC-----CCCChhhHHHhhHHH----HHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATDL-----NTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-----~~~~~~~~~~~nv~g----~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+||... ..++++..+++|+.+ +..+++.+++.+.+|+|++||...+..+.......++..
T Consensus 91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~ 170 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWER 170 (306)
T ss_pred hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCccc
Confidence 4899999999422 234567789999999 666777777766779999999875532211111111111
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEE--EEeCCCcccCC
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTC--ALRPSNVFGPG 194 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~--ilRp~~i~G~~ 194 (467)
+..+...|+.||+..+.+.+.++.+ .|++++ .+.||.+..+.
T Consensus 171 --~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 171 --RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 2345678999999999988877543 355444 45799887654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.4e-17 Score=151.84 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=148.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| +.|++.+|....... +... ...++.++.+|++|.+++.++++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g-~~v~~~~~~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG-AIVGLHGTRVEKLEA-------LAAE-LGERVKIFPANLSDRDEVKALGQKAE 75 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHH-------HHHH-hCCceEEEEccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 588888776531100 0000 12357888999999999887653
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++..+++|+.++.++++++.+ .+.+++|++||...+...
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 146 (245)
T PRK12936 76 ADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN--------- 146 (245)
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC---------
Confidence 4899999999432 2234677899999999999887653 356799999997554211
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
.....|+.+|...+.+++.++.+ .|+++++++|+.+..+................ .....+.
T Consensus 147 ------~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~---------~~~~~~~ 211 (245)
T PRK12936 147 ------PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMGA---------IPMKRMG 211 (245)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccChHHHHHHhcC---------CCCCCCc
Confidence 12357999999888777665432 57999999999886553222111111111111 1123466
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+++|+++++..++... .....|+.+++.++
T Consensus 212 ~~~~ia~~~~~l~~~~---~~~~~G~~~~~~~g 241 (245)
T PRK12936 212 TGAEVASAVAYLASSE---AAYVTGQTIHVNGG 241 (245)
T ss_pred CHHHHHHHHHHHcCcc---ccCcCCCEEEECCC
Confidence 7999999998877421 12346889999886
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=151.58 Aligned_cols=216 Identities=15% Similarity=0.066 Sum_probs=148.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|.||++++++|.++| ++|.++.+...... ......++.++.+|+.|++++.++++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~----------~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREG-AKVAVLYNSAENEA----------KELREKGVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCcHHHH----------HHHHhCCCeEEEecCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 58888766442110 00111257889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHH----HHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~l----l~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++..+++|+.++..+ +..+++.+..++|++||...++.
T Consensus 75 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~---------- 144 (255)
T PRK06463 75 KEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT---------- 144 (255)
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC----------
Confidence 4799999998432 2234567899999996555 44454455679999999876621
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCceEEecCCCc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-----~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+..+...|+.+|+..+.+++.++.+ .|+++++++|+.+-.+.... ....+....... ..
T Consensus 145 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~ 211 (255)
T PRK06463 145 ----AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNK---------TV 211 (255)
T ss_pred ----CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhC---------CC
Confidence 1123467999999999998888643 58999999999885442110 001111111111 11
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+..++|+|++++.++... .....|+.+.+.++.
T Consensus 212 ~~~~~~~~~va~~~~~l~s~~---~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 212 LKTTGKPEDIANIVLFLASDD---ARYITGQVIVADGGR 247 (255)
T ss_pred cCCCcCHHHHHHHHHHHcChh---hcCCCCCEEEECCCe
Confidence 234567999999999987521 234678888887763
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=156.15 Aligned_cols=200 Identities=16% Similarity=0.086 Sum_probs=139.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
|+++||||+|+||++++++|+++| ++|++++|+.......... +. ....++.++.+|+.|.+++.++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADVNEEGGEETLKL---LR--EAGGDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999 5999999876411000000 00 113467889999999998887765
Q ss_pred --CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 --GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 --~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+|+.... .++++..+++|+.++.++.++ +++.+..++|++||...+.
T Consensus 75 ~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~------------- 141 (270)
T PRK05650 75 WGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM------------- 141 (270)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC-------------
Confidence 58999999994321 123455788998888876665 4566778999999986652
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEecCCCccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~---~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..+.+.+.++.+ .|+++++++|+.+..+..... .+........ . ....+
T Consensus 142 --~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-~---------~~~~~ 209 (270)
T PRK05650 142 --QGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGK-L---------LEKSP 209 (270)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHH-H---------hhcCC
Confidence 1233568999999977776666543 589999999999987753321 1111111100 0 01235
Q ss_pred cchhHHHHHHHHHHH
Q 012270 225 TYVENVAHAHVCAAE 239 (467)
Q Consensus 225 i~v~Dva~a~~~al~ 239 (467)
++++|+|+.++.+++
T Consensus 210 ~~~~~vA~~i~~~l~ 224 (270)
T PRK05650 210 ITAADIADYIYQQVA 224 (270)
T ss_pred CCHHHHHHHHHHHHh
Confidence 789999999999997
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=152.83 Aligned_cols=198 Identities=17% Similarity=0.072 Sum_probs=139.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
||+++||||+|+||++++++|+++| ++|++++|+...... +.......++.++.+|+.|.+++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG-WRVGAYDINEAGLAA-------LAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHH-------HHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 599999987642110 1111113468899999999998887654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... +.++++..+++|+.++.++++++.+ .+..++|++||...+.
T Consensus 73 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 141 (260)
T PRK08267 73 ATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIY----------- 141 (260)
T ss_pred HcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCc-----------
Confidence 3699999999432 1234567899999999999888753 3557899999975431
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|+..+.+.+.++. ..++++++++|+.+-.+............... ...-.+
T Consensus 142 ----~~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~-----------~~~~~~ 206 (260)
T PRK08267 142 ----GQPGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGSTK-----------RLGVRL 206 (260)
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhhHh-----------hccCCC
Confidence 112346899999999988888753 35899999999988654322100000000000 011135
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
..+|+|++++.+++
T Consensus 207 ~~~~va~~~~~~~~ 220 (260)
T PRK08267 207 TPEDVAEAVWAAVQ 220 (260)
T ss_pred CHHHHHHHHHHHHh
Confidence 67999999999986
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=152.30 Aligned_cols=221 Identities=13% Similarity=0.093 Sum_probs=153.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|.||+++++.|.++| ++|++++|+.......... +.......++..+.+|+.|.+++.++++
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADALAQARDE---LAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999876421100000 1111113467889999999988776654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ..++++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 84 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------- 152 (257)
T PRK09242 84 DHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT----------- 152 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC-----------
Confidence 4799999998421 234567789999999999988875 34567999999986652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|...+.+++.++.+ .|++++.++|+.+.++...... +.+........+ ..-
T Consensus 153 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~---------~~~ 219 (257)
T PRK09242 153 ----HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTP---------MRR 219 (257)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCC---------CCC
Confidence 1234567999999999998877533 5899999999999887643221 122222222111 122
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+...+|++.++..++... .....|+.+.+.++
T Consensus 220 ~~~~~~va~~~~~l~~~~---~~~~~g~~i~~~gg 251 (257)
T PRK09242 220 VGEPEEVAAAVAFLCMPA---ASYITGQCIAVDGG 251 (257)
T ss_pred CcCHHHHHHHHHHHhCcc---cccccCCEEEECCC
Confidence 445799999998887521 12346788877764
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=150.55 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=154.2
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|++...++++++||||+|.||.+++++|+++| +.|++++|+.... ...+. +.. ...++.++.+|+.|.+++.+
T Consensus 8 ~~~~~l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~-~~~~~---~~~--~~~~~~~~~~D~~~~~~i~~ 80 (258)
T PRK06935 8 MDFFSLDGKVAIVTGGNTGLGQGYAVALAKAG-ADIIITTHGTNWD-ETRRL---IEK--EGRKVTFVQVDLTKPESAEK 80 (258)
T ss_pred cccccCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCcHHH-HHHHH---HHh--cCCceEEEEcCCCCHHHHHH
Confidence 34444567899999999999999999999999 5999998863210 00000 100 12468889999999998887
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCC
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~ 142 (467)
+++ ++|++||+|+... ...+++..+++|+.++.++.+++. +.+..++|++||...+..
T Consensus 81 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---- 156 (258)
T PRK06935 81 VVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQG---- 156 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccC----
Confidence 765 5799999998422 123456788999999888776665 345679999999877621
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~ 217 (467)
......|+.+|+..|.+++.++.+ .|+++++++||.+..+...... ..........
T Consensus 157 -----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~-------- 217 (258)
T PRK06935 157 -----------GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKR-------- 217 (258)
T ss_pred -----------CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhc--------
Confidence 123458999999999998888654 4799999999998766432111 1111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.....+..++|+|.++..++... .....|+++.+.++
T Consensus 218 -~~~~~~~~~~dva~~~~~l~s~~---~~~~~G~~i~~dgg 254 (258)
T PRK06935 218 -IPAGRWGEPDDLMGAAVFLASRA---SDYVNGHILAVDGG 254 (258)
T ss_pred -CCCCCCCCHHHHHHHHHHHcChh---hcCCCCCEEEECCC
Confidence 01134677899999998877421 23457888888775
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-17 Score=150.30 Aligned_cols=213 Identities=16% Similarity=0.054 Sum_probs=152.2
Q ss_pred EEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC---CCEE
Q 012270 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG---ASTV 88 (467)
Q Consensus 12 lVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---~D~V 88 (467)
+||||+|+||+++++.|+++| ++|++++|++....... .......+++++.+|++|++++.++++. +|++
T Consensus 1 lItGas~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~------~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~l 73 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG-ARVTIASRSRDRLAAAA------RALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHV 73 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH------HHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEE
Confidence 599999999999999999999 59999999754211000 0000124688899999999999988874 7999
Q ss_pred EEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 89 FYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 89 ih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
||+++... ...+++..+++|+.++.++.++....+..++|++||...|. +..+...|+
T Consensus 74 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~---------------~~~~~~~Y~ 138 (230)
T PRK07041 74 VITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR---------------PSASGVLQG 138 (230)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC---------------CCCcchHHH
Confidence 99998422 22446778999999999999977666678999999997762 123456899
Q ss_pred HHHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCCCCc----HHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQL----VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~-g~~~~ilRp~~i~G~~~~~~----~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
.+|...|.+++.++.+. +++++.++|+.+-.+..... ...+........+ ...+..++|+|++++.
T Consensus 139 ~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~ 209 (230)
T PRK07041 139 AINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP---------ARRVGQPEDVANAILF 209 (230)
T ss_pred HHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC---------CCCCcCHHHHHHHHHH
Confidence 99999999998876543 58899999988755431110 0111111111111 1124568999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCC
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
++. .....|+.|++.++++
T Consensus 210 l~~-----~~~~~G~~~~v~gg~~ 228 (230)
T PRK07041 210 LAA-----NGFTTGSTVLVDGGHA 228 (230)
T ss_pred Hhc-----CCCcCCcEEEeCCCee
Confidence 887 3456788999988754
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=152.32 Aligned_cols=220 Identities=15% Similarity=0.065 Sum_probs=151.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+++++||||+|+||.++++.|+++| ++|++++|+........+. +.. ...++.++.+|++|++++.++++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQ---IRA--AGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976411000000 000 12467889999999999877665
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh-----CCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~-----~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+|+... ..++++..+++|+.++.++.+++.. .+..++|++||.....
T Consensus 82 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~--------- 152 (263)
T PRK07814 82 VEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL--------- 152 (263)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC---------
Confidence 5899999998421 2244677899999999999999874 3557899999964321
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|...|.+++.++.+. +++++.++|+.+..+..... -..+........ ...
T Consensus 153 ------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 217 (263)
T PRK07814 153 ------AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKAT---------PLR 217 (263)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcC---------CCC
Confidence 12345689999999999988876532 48899999998865431110 011111111111 112
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....++|+|++++.++... .....|+.+.+.++
T Consensus 218 ~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~~ 250 (263)
T PRK07814 218 RLGDPEDIAAAAVYLASPA---GSYLTGKTLEVDGG 250 (263)
T ss_pred CCcCHHHHHHHHHHHcCcc---ccCcCCCEEEECCC
Confidence 3567899999999987521 12456777777664
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-16 Score=145.71 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=149.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH-HHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~ 85 (467)
++|+++||||+|+||+++++.|+++| ++|++++|+.... ...++..+.+|+.|+ +++.+.+.++
T Consensus 4 ~~k~~lVtGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~--------------~~~~~~~~~~D~~~~~~~~~~~~~~i 68 (235)
T PRK06550 4 MTKTVLITGAASGIGLAQARAFLAQG-AQVYGVDKQDKPD--------------LSGNFHFLQLDLSDDLEPLFDWVPSV 68 (235)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHCC-CEEEEEeCCcccc--------------cCCcEEEEECChHHHHHHHHHhhCCC
Confidence 56899999999999999999999999 5999998875410 123578899999997 4444555578
Q ss_pred CEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 86 STVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 86 D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
|+|||+|+... ..++++..+++|+.++.++++++.. .+..++|++||...+. +
T Consensus 69 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------~ 133 (235)
T PRK06550 69 DILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFV---------------A 133 (235)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc---------------C
Confidence 99999998421 1234567899999999999998764 3456899999986642 1
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cH-HHHHHHhcCCCceEEecCCCccccccchh
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LV-PLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
......|+.+|...+.+.+.++.+ .|+++++++|+.+.++.... +. ..+........ ....+...+
T Consensus 134 ~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 204 (235)
T PRK06550 134 GGGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARET---------PIKRWAEPE 204 (235)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccC---------CcCCCCCHH
Confidence 123457999999988887776543 48999999999998875321 11 11111222211 123467789
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
|+|++++.++... .....|+.+.+.++
T Consensus 205 ~~a~~~~~l~s~~---~~~~~g~~~~~~gg 231 (235)
T PRK06550 205 EVAELTLFLASGK---ADYMQGTIVPIDGG 231 (235)
T ss_pred HHHHHHHHHcChh---hccCCCcEEEECCc
Confidence 9999999988521 23456778877765
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=152.47 Aligned_cols=224 Identities=17% Similarity=0.168 Sum_probs=147.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+++++||||+|+||++++++|+++| ++|++++|+.......... +.+ ...++..+.+|++|++++.++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADK---LSK--DGGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 5999999875411000000 000 12467789999999998877665
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ..++++..+++|+.++.++++++... + -.++|++||...+.
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 144 (256)
T PRK08643 76 TFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV----------- 144 (256)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc-----------
Confidence 4899999998422 12334678899999988877776543 2 35899999976541
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE-----EecCCCc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF-----IIGSGEN 220 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~-----~~g~g~~ 220 (467)
+......|+.+|+..|.+++.++. ..|++++.++|+.+.++.........- ...+.+.. .... ..
T Consensus 145 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~ 217 (256)
T PRK08643 145 ----GNPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVG--ENAGKPDEWGMEQFAKD-IT 217 (256)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhc--cccCCCchHHHHHHhcc-CC
Confidence 112346799999999888777653 368999999999997764221100000 00000000 0000 01
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+..++|+|.++..++.. ......|+.+.+.++
T Consensus 218 ~~~~~~~~~va~~~~~L~~~---~~~~~~G~~i~vdgg 252 (256)
T PRK08643 218 LGRLSEPEDVANCVSFLAGP---DSDYITGQTIIVDGG 252 (256)
T ss_pred CCCCcCHHHHHHHHHHHhCc---cccCccCcEEEeCCC
Confidence 12456799999999888752 123567888888765
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-17 Score=152.06 Aligned_cols=219 Identities=19% Similarity=0.133 Sum_probs=145.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh------
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE------ 83 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~------ 83 (467)
+++||||+|+||+++++.|+++| ++|++++|+.......... .+........+..+.+|++|.+++.++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG-AKVFLTDINDAAGLDAFAA--EINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHH--HHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999999 5999999873211000000 00010111224457899999998877664
Q ss_pred -CCCEEEEcccCCCC-------CCChhhHHHhhHH----HHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 -GASTVFYVDATDLN-------TDDFYNCYMIIVQ----GAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 -~~D~Vih~aa~~~~-------~~~~~~~~~~nv~----g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|+|||+|+.... ..+....+++|+. ++.++++++++.+.+++|++||...++.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~------------- 144 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA------------- 144 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC-------------
Confidence 47999999984321 1234567888888 7788888888878889999999877631
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHH-----HHHHHhcCCCceEEecCCCcc
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVP-----LLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~-----~~~~~~~~g~~~~~~g~g~~~ 221 (467)
......|+.+|...+.+++.++.+ .+++++.++|+.+.+|....... .....+.++. +.
T Consensus 145 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~ 213 (251)
T PRK07069 145 --EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV---------PL 213 (251)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC---------CC
Confidence 123457999999999988876432 25899999999998875432111 1111111111 12
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+.+++|+|++++.++... .....|+.+.+.++
T Consensus 214 ~~~~~~~~va~~~~~l~~~~---~~~~~g~~i~~~~g 247 (251)
T PRK07069 214 GRLGEPDDVAHAVLYLASDE---SRFVTGAELVIDGG 247 (251)
T ss_pred CCCcCHHHHHHHHHHHcCcc---ccCccCCEEEECCC
Confidence 34567999999999876421 12345666666554
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-17 Score=154.59 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=121.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
||+++||||+|+||+++++.|+++| ++|++++|+.... .. ....++.++.+|+.|.+++.++++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~~----------~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG-YEVWATARKAEDV----------EA-LAAAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HH-HHHCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 5999999876411 00 112357788999999998877663
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 69 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------------- 135 (274)
T PRK05693 69 EHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL------------- 135 (274)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC-------------
Confidence 5799999999421 22345678999999999999987542 346899999975431
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCC
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG 194 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~ 194 (467)
+......|+.+|...|.+.+.++. ..|+++++++||.+..+.
T Consensus 136 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 136 --VTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 112346799999999988776653 268999999999997653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=149.58 Aligned_cols=194 Identities=13% Similarity=0.016 Sum_probs=139.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+++++||||+|+||++++++|+++| ++|++++|++......... +.......++.++.+|++|++++.++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAE---LLARYPGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 5999999876421100000 1111123468889999999998877654
Q ss_pred ---CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||.... ...+...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 146 (248)
T PRK08251 78 ELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG----------- 146 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC-----------
Confidence 58999999984221 23345678999999999888774 446789999999765421
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
.+.+...|+.+|+..+.+.+.++.+ .++++++++|+.+.++.... .+. ....+.
T Consensus 147 ---~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~----------~~~----------~~~~~~ 203 (248)
T PRK08251 147 ---LPGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK----------AKS----------TPFMVD 203 (248)
T ss_pred ---CCCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc----------ccc----------CCccCC
Confidence 1123468999999999888766532 47999999999997653211 000 113567
Q ss_pred hhHHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAE 239 (467)
Q Consensus 227 v~Dva~a~~~al~ 239 (467)
.+|.|++++.+++
T Consensus 204 ~~~~a~~i~~~~~ 216 (248)
T PRK08251 204 TETGVKALVKAIE 216 (248)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999987
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=148.73 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=139.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC---
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 84 (467)
|++++||||+|+||++++++|+++| ++|++++|++.... . +.. ...++.++.+|++|.+++.+++++
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G-~~V~~~~r~~~~~~----~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQG-WQVIACGRNQSVLD----E---LHT--QSANIFTLAFDVTDHPGTKAALSQLPF 70 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEECCHHHHH----H---HHH--hcCCCeEEEeeCCCHHHHHHHHHhccc
Confidence 4689999999999999999999999 59999999764110 0 000 123578899999999999988875
Q ss_pred -CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 85 -ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 85 -~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
.|.+||+|+... ..++++..+++|+.++.++++++... +-+++|++||..... +.
T Consensus 71 ~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~---------------~~ 135 (240)
T PRK06101 71 IPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL---------------AL 135 (240)
T ss_pred CCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc---------------CC
Confidence 589999987321 12234578999999999999998864 235799999864321 11
Q ss_pred CCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHH
Q 012270 155 KFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva 231 (467)
.....|+.+|+..|.+.+.++ ...|++++++||+.++++..... . . + ....+..+|+|
T Consensus 136 ~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~---------~-~------~---~~~~~~~~~~a 196 (240)
T PRK06101 136 PRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN---------T-F------A---MPMIITVEQAS 196 (240)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC---------C-C------C---CCcccCHHHHH
Confidence 234589999999999988765 34689999999999988743210 0 0 0 01236799999
Q ss_pred HHHHHHHH
Q 012270 232 HAHVCAAE 239 (467)
Q Consensus 232 ~a~~~al~ 239 (467)
+.++.+++
T Consensus 197 ~~i~~~i~ 204 (240)
T PRK06101 197 QEIRAQLA 204 (240)
T ss_pred HHHHHHHh
Confidence 99999987
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=153.60 Aligned_cols=190 Identities=15% Similarity=0.016 Sum_probs=136.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|.||++++++|+++| +.|++.+|++..... .... ..++.++.+|++|++++.++++
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~-------~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALG-ARVAIGDLDEALAKE-------TAAE--LGLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHH--hccceEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 589999987641100 0000 1147889999999998776654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... ..++...++++|+.++.++.+++. +.+..++|++||.+.+.
T Consensus 74 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 142 (273)
T PRK07825 74 ADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI----------- 142 (273)
T ss_pred HHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC-----------
Confidence 4799999999432 122356688999999888777654 45677999999986542
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..+.+.+.++. ..|+++++++|+.+-.+.... .. +.....++
T Consensus 143 ----~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~------------~~------~~~~~~~~ 200 (273)
T PRK07825 143 ----PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAG------------TG------GAKGFKNV 200 (273)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcc------------cc------cccCCCCC
Confidence 113456899999988776655532 358999999998874432111 00 01123578
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
.++|+|++++.+++
T Consensus 201 ~~~~va~~~~~~l~ 214 (273)
T PRK07825 201 EPEDVAAAIVGTVA 214 (273)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999987
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=151.16 Aligned_cols=221 Identities=10% Similarity=0.066 Sum_probs=154.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++|+||||+|+||++++++|.++| ++|++++|..........+ +.. ...++..+.+|++|.+++.++++
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G-~~vv~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~D~~~~~~i~~~~~~~~ 83 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDE---IQQ--LGGQAFACRCDITSEQELSALADFAL 83 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---HHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5899988865421100000 000 12357788999999998877654
Q ss_pred ----CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... ...+++..+++|+.++.++++++.. .+..++|++||.+...
T Consensus 84 ~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------ 151 (255)
T PRK06113 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN------------ 151 (255)
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC------------
Confidence 4799999999422 1234566789999999999999863 3445899999976431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..+.+++.++.+ .|++++++.|+.+-.+..... .+.+........ ....+.
T Consensus 152 ---~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~~~ 219 (255)
T PRK06113 152 ---KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT---------PIRRLG 219 (255)
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcC---------CCCCCc
Confidence 2234568999999999999887643 579999999999876543221 122222222211 123466
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.++|++++++.++.. ......|+.+++.++..
T Consensus 220 ~~~d~a~~~~~l~~~---~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 220 QPQDIANAALFLCSP---AASWVSGQILTVSGGGV 251 (255)
T ss_pred CHHHHHHHHHHHcCc---cccCccCCEEEECCCcc
Confidence 889999999998752 12345788999998743
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=150.73 Aligned_cols=220 Identities=11% Similarity=0.083 Sum_probs=147.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC-CCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|.++| +.|.+.++ ..........+ +. .....+..+.+|+.|.+++..+++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEAEETVYE---IQ--SNGGSAFSIGANLESLHGVEALYSSL 76 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHH---HH--hcCCceEEEecccCCHHHHHHHHHHH
Confidence 46899999999999999999999999 58888653 32210000000 00 012346778899999877654331
Q ss_pred -----------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCC
Q 012270 84 -----------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -----------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+||... ..++++.++++|+.++..+++++... +..++|++||...+.
T Consensus 77 ~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 150 (252)
T PRK12747 77 DNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI------ 150 (252)
T ss_pred HHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc------
Confidence 5899999999421 11224678889999999999887764 235999999987652
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEecCCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|+..+.+++.++.+ .|+++.++.||.+.++......+ ......... ..
T Consensus 151 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~--------~~ 213 (252)
T PRK12747 151 ---------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATT--------IS 213 (252)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHHh--------cC
Confidence 1123468999999999998877543 58999999999998874322111 001111000 01
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+.+++|+|.++..++.. ......|+.+.+.++
T Consensus 214 ~~~~~~~~~dva~~~~~l~s~---~~~~~~G~~i~vdgg 249 (252)
T PRK12747 214 AFNRLGEVEDIADTAAFLASP---DSRWVTGQLIDVSGG 249 (252)
T ss_pred cccCCCCHHHHHHHHHHHcCc---cccCcCCcEEEecCC
Confidence 123577899999999988751 123456788888765
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-16 Score=148.38 Aligned_cols=219 Identities=14% Similarity=0.040 Sum_probs=147.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
+++.++||||+|+||++++++|+++|+ +|++..+...... +. .+... ....++..+.+|+.|.+++.++++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRR---VK--WLEDQKALGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHH---HH--HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 357899999999999999999999995 7877543221000 00 00000 012356778999999998877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ...+++.++++|+.++.++.+++ ++.+..++|++||.....
T Consensus 76 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 145 (246)
T PRK12938 76 KAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK---------- 145 (246)
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC----------
Confidence 5899999999432 22445778899999977765554 455678999999974421
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|...|.+.+.++.+ .|+++.+++|+.+.+|......+.......... ....+
T Consensus 146 -----~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~---------~~~~~ 211 (246)
T PRK12938 146 -----GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATI---------PVRRL 211 (246)
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcChHHHHHHHhcC---------CccCC
Confidence 1234568999999888877766532 589999999999987754333333333332221 12345
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..++|++.++..++... .....|+.+.+.++
T Consensus 212 ~~~~~v~~~~~~l~~~~---~~~~~g~~~~~~~g 242 (246)
T PRK12938 212 GSPDEIGSIVAWLASEE---SGFSTGADFSLNGG 242 (246)
T ss_pred cCHHHHHHHHHHHcCcc---cCCccCcEEEECCc
Confidence 56899999999877410 23457788888765
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=151.72 Aligned_cols=220 Identities=12% Similarity=0.104 Sum_probs=154.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcE-EEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.++++++||||+|+||+++++.|.++|. + |++++|+.......... +. ....++.++.+|++|++++.++++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNAEKGEAQAAE---LE--ALGAKAVFVQADLSDVEDCRRVVAA 77 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHH---HH--hcCCeEEEEEccCCCHHHHHHHHHH
Confidence 4568999999999999999999999995 6 99999875311100000 10 112357788999999998887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+++... ..+.++.++++|+.++.++++++... + ..++|++||...++..
T Consensus 78 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~------ 151 (260)
T PRK06198 78 ADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ------ 151 (260)
T ss_pred HHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC------
Confidence 4799999999432 22334667999999999999887543 2 3579999998776311
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-------HHHHHHHhcCCCceEEe
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-------VPLLVNLAKPGWTKFII 215 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-------~~~~~~~~~~g~~~~~~ 215 (467)
.....|+.+|...|.+.+.++.+ .+++++.++|+.++++..... ...+.......
T Consensus 152 ---------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~------ 216 (260)
T PRK06198 152 ---------PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAAT------ 216 (260)
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhcc------
Confidence 22468999999999998876543 469999999999998853210 11222221111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.....+++++|+|++++.++... .....|+.+++.++
T Consensus 217 ---~~~~~~~~~~~~a~~~~~l~~~~---~~~~~G~~~~~~~~ 253 (260)
T PRK06198 217 ---QPFGRLLDPDEVARAVAFLLSDE---SGLMTGSVIDFDQS 253 (260)
T ss_pred ---CCccCCcCHHHHHHHHHHHcChh---hCCccCceEeECCc
Confidence 12345788999999999987521 23467888888876
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=155.39 Aligned_cols=216 Identities=14% Similarity=0.087 Sum_probs=146.0
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|...+..+++++||||+|.||+++++.|+++| ++|++++|+........+. +.. ...++..+.+|++|.+++++
T Consensus 1 ~~~~~l~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~---l~~--~g~~~~~v~~Dv~d~~~v~~ 74 (334)
T PRK07109 1 MMLKPIGRQVVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEALAAE---IRA--AGGEALAVVADVADAEAVQA 74 (334)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH--cCCcEEEEEecCCCHHHHHH
Confidence 33334456899999999999999999999999 5999999876411000000 000 12467889999999999887
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHH----HHHhCCCCeEEEEcCccccccCCCC
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~----aa~~~~v~r~v~~SS~~vyg~~~~~ 142 (467)
+++ ++|++||+|+... ..++.+..+++|+.++.++.+ .+++.+..++|++||...|..
T Consensus 75 ~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~---- 150 (334)
T PRK07109 75 AADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS---- 150 (334)
T ss_pred HHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC----
Confidence 754 5899999999422 223346678888877666544 445555678999999987621
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~-----~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
......|+.+|...+.+.+.++. ..++++++++|+.+-.|... .. ...... .
T Consensus 151 -----------~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~----~~-~~~~~~-------~ 207 (334)
T PRK07109 151 -----------IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD----WA-RSRLPV-------E 207 (334)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh----hh-hhhccc-------c
Confidence 12346899999998887776542 24799999999998665311 11 110000 0
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
......+..++|+|++++.+++ .+ .+.+++++
T Consensus 208 ~~~~~~~~~pe~vA~~i~~~~~-----~~---~~~~~vg~ 239 (334)
T PRK07109 208 PQPVPPIYQPEVVADAILYAAE-----HP---RRELWVGG 239 (334)
T ss_pred ccCCCCCCCHHHHHHHHHHHHh-----CC---CcEEEeCc
Confidence 1112346789999999999997 22 34666765
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=151.42 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=152.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+++++||||+|.||+++++.|+++| ++|++++|+........+. +.......++..+.+|++|++++.++++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREG-AAVALADLDAALAERAAAA---IARDVAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhccCCceEEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 5999999865421100000 1110123457889999999998887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 150 (260)
T PRK07063 81 EEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK---------- 150 (260)
T ss_pred HHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc----------
Confidence 5899999999421 2245677899999999998888753 3456899999986541
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----H-HHHHhcCCCceEEecCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----L-LVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-----~-~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..++||.+-.+....... . .........
T Consensus 151 -----~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (260)
T PRK07063 151 -----IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQ-------- 217 (260)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcC--------
Confidence 1123457999999999998887543 58999999999886553211110 0 001111100
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+..++|+|.+++.++.. ......|+...+.++.
T Consensus 218 -~~~r~~~~~~va~~~~fl~s~---~~~~itG~~i~vdgg~ 254 (260)
T PRK07063 218 -PMKRIGRPEEVAMTAVFLASD---EAPFINATCITIDGGR 254 (260)
T ss_pred -CCCCCCCHHHHHHHHHHHcCc---cccccCCcEEEECCCe
Confidence 112355689999999988752 1234678888777663
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=149.35 Aligned_cols=218 Identities=17% Similarity=0.084 Sum_probs=145.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++|+||||+|+||.+++++|+++| ++|++++|+...... ... ..+..++.+|++|.+++.++++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G-~~v~~~~r~~~~~~~-------~~~---~~~~~~~~~D~~~~~~~~~~~~~~ 73 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEG-ATVVVGDIDPEAGKA-------AAD---EVGGLFVPTDVTDEDAVNALFDTA 73 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHH---HcCCcEEEeeCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599999987541100 000 0122578899999999887775
Q ss_pred -----CCCEEEEcccCCCC---------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCcc-ccccCCCCCC
Q 012270 84 -----GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTAD-VVFDGSHDIH 144 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~---------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~-vyg~~~~~~~ 144 (467)
++|+|||+|+.... .+.++..+++|+.++.++++++. +.+..++|++||.. +++.
T Consensus 74 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~------ 147 (255)
T PRK06057 74 AETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS------ 147 (255)
T ss_pred HHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC------
Confidence 47999999984321 12356788999999988777664 34556899999864 3321
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
..+...|+.+|+..+.+.+.++. ..|++++++||+.+.++........-...... .....+ .
T Consensus 148 ---------~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~-~~~~~~-----~ 212 (255)
T PRK06057 148 ---------ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAAR-RLVHVP-----M 212 (255)
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHH-HHhcCC-----C
Confidence 12345799999877776665432 24899999999999887533211100000000 000111 1
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+.+++|+|+++..++... .....|+.+.+.++
T Consensus 213 ~~~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~~~g 246 (255)
T PRK06057 213 GRFAEPEEIAAAVAFLASDD---ASFITASTFLVDGG 246 (255)
T ss_pred CCCcCHHHHHHHHHHHhCcc---ccCccCcEEEECCC
Confidence 25788999999988766411 23455778877765
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=150.77 Aligned_cols=220 Identities=14% Similarity=0.118 Sum_probs=150.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| +.|++++|+........+. +.. ...++..+.+|+.|.+++.++++
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG-AKVAILDRNQEKAEAVVAE---IKA--AGGEALAVKADVLDKESLEQARQQIL 82 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5999999875311000000 000 12357889999999988877654
Q ss_pred ----CCCEEEEcccCCC----------------------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCc
Q 012270 84 ----GASTVFYVDATDL----------------------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTA 133 (467)
Q Consensus 84 ----~~D~Vih~aa~~~----------------------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~ 133 (467)
++|+|||+|+... ...++...+++|+.++..+++++ ++.+..++|++||.
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~ 162 (278)
T PRK08277 83 EDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSM 162 (278)
T ss_pred HHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 5899999998321 12335678899999988665554 44456789999998
Q ss_pred cccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-------HHH
Q 012270 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-------LLV 203 (467)
Q Consensus 134 ~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-------~~~ 203 (467)
..+. +..+...|+.+|+..|.+++.++.+ .|+++.+++|+.+..+..+.... ...
T Consensus 163 ~~~~---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~ 227 (278)
T PRK08277 163 NAFT---------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERA 227 (278)
T ss_pred hhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHH
Confidence 7762 1233467999999999998877644 48999999999998875322110 011
Q ss_pred HHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 204 NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 204 ~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...... .....+...+|+|++++.++..- ......|+...+.++
T Consensus 228 ~~~~~~---------~p~~r~~~~~dva~~~~~l~s~~--~~~~~tG~~i~vdgG 271 (278)
T PRK08277 228 NKILAH---------TPMGRFGKPEELLGTLLWLADEK--ASSFVTGVVLPVDGG 271 (278)
T ss_pred HHHhcc---------CCccCCCCHHHHHHHHHHHcCcc--ccCCcCCCEEEECCC
Confidence 111111 12234667899999999877510 023457888888765
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-16 Score=145.76 Aligned_cols=211 Identities=14% Similarity=0.046 Sum_probs=147.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
|+|+++||||+|.||+++++.|+++| ++|++++|++.... +.....++..+.+|+.|.+++.++++
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQG-QPVIVSYRTHYPAI----------DGLRQAGAQCIQADFSTNAGIMAFIDELK 69 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchhHH----------HHHHHcCCEEEEcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999 59999998764110 11111246788999999988876653
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C--CCeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K--VRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~--v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+|+... ..++++..+++|+.++..+.+++... + ..++|++||.... .
T Consensus 70 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~--~------- 140 (236)
T PRK06483 70 QHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVE--K------- 140 (236)
T ss_pred hhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhc--c-------
Confidence 3799999998421 12346778999999998777766542 2 3589999986432 0
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..|.+++.++.+. ++++.+++|+.+.-+.... ...........+. .-+
T Consensus 141 ------~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~--~~~~~~~~~~~~~---------~~~ 203 (236)
T PRK06483 141 ------GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD--AAYRQKALAKSLL---------KIE 203 (236)
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC--HHHHHHHhccCcc---------ccC
Confidence 11234589999999999999887543 5999999999874322111 1111112221111 123
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..++|+|+++..++. .....|+++.+.++.
T Consensus 204 ~~~~~va~~~~~l~~-----~~~~~G~~i~vdgg~ 233 (236)
T PRK06483 204 PGEEEIIDLVDYLLT-----SCYVTGRSLPVDGGR 233 (236)
T ss_pred CCHHHHHHHHHHHhc-----CCCcCCcEEEeCccc
Confidence 458999999999886 356788888887764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=155.01 Aligned_cols=213 Identities=16% Similarity=0.100 Sum_probs=141.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++|+||||+|+||++++++|+++| ++|++++|+....... ... ..++.++.+|++|.+++.++++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~------~~~---l~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG-AHVIVPARRPDVAREA------LAG---IDGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH------HHH---hhhCeEEEccCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 4999999976411000 000 1247889999999999887763
Q ss_pred ----CCCEEEEcccCCC-----CCCChhhHHHhhHHHHHHHHH----HHHhCCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-----~~~~~~~~~~~nv~g~~~ll~----aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+||... ..++++..+++|+.++.++.+ ++++.+..|+|++||........ .....+...
T Consensus 95 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~~~ 173 (315)
T PRK06196 95 DSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPI-RWDDPHFTR 173 (315)
T ss_pred hcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCC-CccccCccC
Confidence 4899999999432 234467789999999666655 44455557999999975432110 000011111
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHH-HH--HHhcCCCceEEecCCCccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPL-LV--NLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~-~~--~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.||...+.+.+.++. ..|++++++|||.+.++.....-.. .. ..+..... .+ ...+
T Consensus 174 --~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~ 244 (315)
T PRK06196 174 --GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGN-PI------DPGF 244 (315)
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhh-hh------hhhc
Confidence 223456899999999988877643 3589999999999998854322110 00 00100000 00 0024
Q ss_pred cchhHHHHHHHHHHH
Q 012270 225 TYVENVAHAHVCAAE 239 (467)
Q Consensus 225 i~v~Dva~a~~~al~ 239 (467)
..++|.|.+++.++.
T Consensus 245 ~~~~~~a~~~~~l~~ 259 (315)
T PRK06196 245 KTPAQGAATQVWAAT 259 (315)
T ss_pred CCHhHHHHHHHHHhc
Confidence 568999999998885
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=149.31 Aligned_cols=219 Identities=12% Similarity=0.055 Sum_probs=152.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||+++++.|+++| +.|++++|++.......+. +. ....++..+.+|+.|++++.++++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAA---LR--AAGGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999975311000000 00 012358889999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+.|+|||+++... ..++++..+++|+.++.++.+++.+ .+.+++|++||...+.
T Consensus 84 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------- 152 (256)
T PRK06124 84 AEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV----------- 152 (256)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc-----------
Confidence 3699999999422 1234567899999999999976654 5678999999976531
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|...+.+++.++.+ .+++++.++|+.+.++...... ..+........ ....
T Consensus 153 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~ 219 (256)
T PRK06124 153 ----ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRT---------PLGR 219 (256)
T ss_pred ----CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcC---------CCCC
Confidence 1123468999999999988876543 4799999999999987532211 11211222111 1234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+++++|++.+++.++... .....|+.+.+.++
T Consensus 220 ~~~~~~~a~~~~~l~~~~---~~~~~G~~i~~dgg 251 (256)
T PRK06124 220 WGRPEEIAGAAVFLASPA---ASYVNGHVLAVDGG 251 (256)
T ss_pred CCCHHHHHHHHHHHcCcc---cCCcCCCEEEECCC
Confidence 788999999999988621 12356777777654
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=148.82 Aligned_cols=221 Identities=13% Similarity=0.052 Sum_probs=151.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++++++||||+|+||++++++|+++| ++|++++|+.......... +. ....++..+.+|+.+.+++.++++
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAG-AKVVLASRRVERLKELRAE---IE--AEGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEecCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 5999999976421000000 00 012457889999999999887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C--------CCeEEEEcCcccccc
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K--------VRRLVYNSTADVVFD 138 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~--------v~r~v~~SS~~vyg~ 138 (467)
++|+|||+++... ...+++.++++|+.++.++++++... . ..++|++||...+.
T Consensus 80 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~- 158 (258)
T PRK06949 80 AETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR- 158 (258)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-
Confidence 4899999999422 12346678999999999999877532 1 25899999986641
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEE
Q 012270 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFI 214 (467)
Q Consensus 139 ~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|...|.+++.++.+ .|+++++++||.++++...... ......... . +
T Consensus 159 --------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~-~---~ 220 (258)
T PRK06949 159 --------------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKLVS-M---L 220 (258)
T ss_pred --------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHHHh-c---C
Confidence 1133568999999999988887643 5899999999999988643211 111111111 0 0
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+...+|++.++..++... .....|....+.++
T Consensus 221 -----~~~~~~~p~~~~~~~~~l~~~~---~~~~~G~~i~~dgg 256 (258)
T PRK06949 221 -----PRKRVGKPEDLDGLLLLLAADE---SQFINGAIISADDG 256 (258)
T ss_pred -----CCCCCcCHHHHHHHHHHHhChh---hcCCCCcEEEeCCC
Confidence 1123555799999999887521 23356766665553
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=145.14 Aligned_cols=221 Identities=14% Similarity=0.072 Sum_probs=147.8
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCC----CcCCCCCCCcC--CCCCeEEEEecCCCHHHH
Q 012270 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDP----SESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 7 ~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~----~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l 78 (467)
++++|+||||+| .||.+++++|+++| ++|++++|++...... ......+.... ...++.++.+|++|.+++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKG-IDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcC-CcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 568899999996 69999999999999 5999999873211000 00000000000 123588999999999988
Q ss_pred HHHHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCC
Q 012270 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGS 140 (467)
Q Consensus 79 ~~~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~ 140 (467)
..+++ ++|+|||+|+... ...+++..+++|+.++.++++++... +.+++|++||...++
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--- 159 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG--- 159 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC---
Confidence 76654 3799999998421 11334667899999999999988643 346899999987652
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
+..+...|+.+|+..|.+++.++.+ .|++++.++|+.+..+.... .......... +
T Consensus 160 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~---~~~~~~~~~~----~-- 218 (256)
T PRK12748 160 ------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE---ELKHHLVPKF----P-- 218 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh---hHHHhhhccC----C--
Confidence 1123467999999999998877543 58999999999876553221 1111111111 1
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+...+|+|+++..++.. ......|+.+++.++
T Consensus 219 ---~~~~~~~~~~a~~~~~l~~~---~~~~~~g~~~~~d~g 253 (256)
T PRK12748 219 ---QGRVGEPVDAARLIAFLVSE---EAKWITGQVIHSEGG 253 (256)
T ss_pred ---CCCCcCHHHHHHHHHHHhCc---ccccccCCEEEecCC
Confidence 01234579999998877641 012356888888765
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=148.43 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=152.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+++++||||+|.||++++++|+++| ++|++++|+.......... +. ....++..+.+|++|.+++.++++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G-~~vv~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAG-ATIVFNDINQELVDKGLAA---YR--ELGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 4899998876421100000 00 012358889999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..+++...+++|+.++..+.+++.. .+..++|++||.....
T Consensus 82 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 151 (265)
T PRK07097 82 EKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL---------- 151 (265)
T ss_pred HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC----------
Confidence 3799999999432 2344567889999998887777654 4567999999964321
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--------HHHHHHhcCCCceEEec
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--------PLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--------~~~~~~~~~g~~~~~~g 216 (467)
+..+...|+.+|+..+.+++.++.+ .|++++.++||.+..+...... ..+...+....
T Consensus 152 -----~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------ 220 (265)
T PRK07097 152 -----GRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT------ 220 (265)
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC------
Confidence 1134568999999999999888654 4899999999999887432110 00111111111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+...+|+|..++.++... .....|+.+++.++
T Consensus 221 ---~~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~gg 256 (265)
T PRK07097 221 ---PAARWGDPEDLAGPAVFLASDA---SNFVNGHILYVDGG 256 (265)
T ss_pred ---CccCCcCHHHHHHHHHHHhCcc---cCCCCCCEEEECCC
Confidence 1123566899999999988621 23457778877775
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=148.49 Aligned_cols=193 Identities=14% Similarity=0.053 Sum_probs=139.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
||+++||||+|+||.+++++|+++| ++|++++|++.......+. +. .....++.++.+|+.|++++.++++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~---~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDVERLERLADD---LR-ARGAVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHH---HH-HhcCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 5789999999999999999999999 5999999976521110000 00 0113468899999999999887765
Q ss_pred CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
.+|+|||+++... +.+++...+++|+.++.++++++.. .+.+++|++||.... .
T Consensus 76 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~--~------------- 140 (243)
T PRK07102 76 LPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGD--R------------- 140 (243)
T ss_pred cCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccccc--C-------------
Confidence 3699999998422 1223446789999999999988764 467899999997432 1
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
+......|+.+|...+.+.+.++. ..|+++++++|+.+.++.... . . .+ ....+.++|
T Consensus 141 ~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~--------~--~----~~-----~~~~~~~~~ 201 (243)
T PRK07102 141 GRASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG--------L--K----LP-----GPLTAQPEE 201 (243)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc--------c--C----CC-----ccccCCHHH
Confidence 112235799999999998887742 368999999999998763211 0 0 00 123566899
Q ss_pred HHHHHHHHHH
Q 012270 230 VAHAHVCAAE 239 (467)
Q Consensus 230 va~a~~~al~ 239 (467)
+|++++.+++
T Consensus 202 ~a~~i~~~~~ 211 (243)
T PRK07102 202 VAKDIFRAIE 211 (243)
T ss_pred HHHHHHHHHh
Confidence 9999998887
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-16 Score=145.24 Aligned_cols=215 Identities=14% Similarity=0.102 Sum_probs=147.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++|+||||+|.||++++++|+++| ++|+++.+..... ..+.....+++.+.+|++|.+++.++++
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G-~~v~~~~~~~~~~---------~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDG-ANVRFTYAGSKDA---------AERLAQETGATAVQTDSADRDAVIDVVRKSG 74 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCCHHH---------HHHHHHHhCCeEEecCCCCHHHHHHHHHHhC
Confidence 56899999999999999999999999 4888776543210 0000011245678899999998887765
Q ss_pred CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
++|++||+|+... +.++++..+++|+.++.+++..+... +..++|++||.... . . +.
T Consensus 75 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~--~----------~--~~ 140 (237)
T PRK12742 75 ALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD--R----------M--PV 140 (237)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc--c----------C--CC
Confidence 3899999998421 22346789999999999997766654 34689999997431 0 0 22
Q ss_pred CCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHH
Q 012270 155 KFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva 231 (467)
.+...|+.+|+..|.+++.++.+ .|+++++++||.+..+......+ ......... ....+..++|+|
T Consensus 141 ~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~-~~~~~~~~~---------~~~~~~~p~~~a 210 (237)
T PRK12742 141 AGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP-MKDMMHSFM---------AIKRHGRPEEVA 210 (237)
T ss_pred CCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH-HHHHHHhcC---------CCCCCCCHHHHH
Confidence 34578999999999998876543 57999999999997664322111 111111111 112356789999
Q ss_pred HHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 232 HAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 232 ~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++..++... .....|..+.+.++
T Consensus 211 ~~~~~l~s~~---~~~~~G~~~~~dgg 234 (237)
T PRK12742 211 GMVAWLAGPE---ASFVTGAMHTIDGA 234 (237)
T ss_pred HHHHHHcCcc---cCcccCCEEEeCCC
Confidence 9998887521 23456777777664
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=147.20 Aligned_cols=219 Identities=8% Similarity=0.025 Sum_probs=150.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||+|.||++++++|+++| ++|++++|...... .+. +.. ...++..+.+|++|.+++.++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G-~~vv~~~~~~~~~~--~~~---~~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAG-ADIVGVGVAEAPET--QAQ---VEA--LGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCchHHHH--HHH---HHH--cCCeEEEEEeCCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 59998887542110 000 100 12457889999999999887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||... ...+++.++++|+.++..+.+++... + -.++|++||...+..
T Consensus 77 ~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~------- 149 (251)
T PRK12481 77 AVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG------- 149 (251)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC-------
Confidence 4799999999422 23456778999999999888876542 2 358999999876521
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 220 (467)
......|+.+|+..+.+++.++. .+|+++..++||.+-.+...... .......... + .
T Consensus 150 --------~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~----~-----p 212 (251)
T PRK12481 150 --------GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILER----I-----P 212 (251)
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhc----C-----C
Confidence 11235799999999999887764 36899999999988655321110 0111111111 1 1
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+..++|+|.++..++... .....|+.+.+.++
T Consensus 213 ~~~~~~peeva~~~~~L~s~~---~~~~~G~~i~vdgg 247 (251)
T PRK12481 213 ASRWGTPDDLAGPAIFLSSSA---SDYVTGYTLAVDGG 247 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCcc---ccCcCCceEEECCC
Confidence 123567899999999887511 24466777777664
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-16 Score=148.08 Aligned_cols=214 Identities=13% Similarity=0.028 Sum_probs=149.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++++++||||+|+||+++++.|+++| ++|++++|+... ....++..+.+|++|++++.++++
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G-~~v~~~~~~~~~--------------~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANG-ANVVNADIHGGD--------------GQHENYQFVPTDVSSAEEVNHTVAE 70 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCccc--------------cccCceEEEEccCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 599999887641 012367889999999998887765
Q ss_pred ------CCCEEEEcccCCC----------------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccc
Q 012270 84 ------GASTVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVF 137 (467)
Q Consensus 84 ------~~D~Vih~aa~~~----------------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg 137 (467)
++|+|||+|+... ..++++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 71 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 150 (266)
T PRK06171 71 IIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE 150 (266)
T ss_pred HHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC
Confidence 4799999999421 12334668999999999999988753 345899999986642
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc-cCCCCCcHH------------H
Q 012270 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGDTQLVP------------L 201 (467)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~-G~~~~~~~~------------~ 201 (467)
+......|+.+|...+.+++.++.+ .|+++.+++||.+- .+....... .
T Consensus 151 ---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~ 215 (266)
T PRK06171 151 ---------------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQ 215 (266)
T ss_pred ---------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHH
Confidence 1123468999999999998887643 58999999999874 221111000 1
Q ss_pred HHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 202 LVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 202 ~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+........ ......+..++|+|.++..++... .....|++.++.++
T Consensus 216 ~~~~~~~~~-------~~p~~r~~~~~eva~~~~fl~s~~---~~~itG~~i~vdgg 262 (266)
T PRK06171 216 LRAGYTKTS-------TIPLGRSGKLSEVADLVCYLLSDR---ASYITGVTTNIAGG 262 (266)
T ss_pred HHhhhcccc-------cccCCCCCCHHHhhhheeeeeccc---cccceeeEEEecCc
Confidence 111111100 111234667899999999887521 23457778877765
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.4e-16 Score=146.61 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=150.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||.+++++|+++| ++|++++|+........+. +.+ ...++..+.+|+.|.+++.++++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G-~~Vi~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRKLDGCQAVADA---IVA--AGGKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999865411000000 000 12356788999999998876654
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+|+... ..++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 80 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 150 (252)
T PRK07035 80 RERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS--------- 150 (252)
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC---------
Confidence 4799999998321 22335578999999999888776 444567999999975431
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+++.++.+ .|++++.+.||.+-.+...... ........... ..
T Consensus 151 ------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 215 (252)
T PRK07035 151 ------PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHI---------PL 215 (252)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccC---------CC
Confidence 2234568999999999999887643 4899999999988655322111 11111121111 11
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+..++|+|+++..++... .....|+.+++.++
T Consensus 216 ~~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~dgg 249 (252)
T PRK07035 216 RRHAEPSEMAGAVLYLASDA---SSYTTGECLNVDGG 249 (252)
T ss_pred CCcCCHHHHHHHHHHHhCcc---ccCccCCEEEeCCC
Confidence 23567899999999877521 23457778877664
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-16 Score=146.62 Aligned_cols=220 Identities=16% Similarity=0.091 Sum_probs=149.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|.||.++++.|.++| ++|++++|++.......+. +.. ...++.++.+|+.|++++.++++
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQLVAE---IRA--EGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 5999999876421100000 100 12357889999999998887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... ..++++..+++|+.++..+.++ +++.+..++|++||...+..
T Consensus 79 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~--------- 149 (254)
T PRK07478 79 ERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA--------- 149 (254)
T ss_pred HhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc---------
Confidence 5899999998421 1134577899999887776554 44455678999999865421
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..+.+++.++.+ .|+++++++||.+-.+..... .+.......... ...
T Consensus 150 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 215 (254)
T PRK07478 150 -----GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLH---------ALK 215 (254)
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcC---------CCC
Confidence 1123468999999999998887654 479999999999866532111 111111111111 112
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+..++|+|++++.++... .....|+++.+.++
T Consensus 216 ~~~~~~~va~~~~~l~s~~---~~~~~G~~~~~dgg 248 (254)
T PRK07478 216 RMAQPEEIAQAALFLASDA---ASFVTGTALLVDGG 248 (254)
T ss_pred CCcCHHHHHHHHHHHcCch---hcCCCCCeEEeCCc
Confidence 3567999999999877521 23456888877665
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=147.50 Aligned_cols=221 Identities=12% Similarity=0.053 Sum_probs=142.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
|+|+++||||+|+||+.+++.|+++| ++|.++.+........... .+. ....++..+.+|+.|.+++.++++
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAEETAD--AVR--AAGGRACVVAGDVANEADVIAMFDAVQ 75 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHH--hcCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 36799999999999999999999999 5887664332210000000 000 012468889999999988876654
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC-CC------CeEEEEcCccccccCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-KV------RRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~-~v------~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|+|||+|+... ...+.+..+++|+.++.++++++.+. .. .++|++||...+...
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~----- 150 (248)
T PRK06947 76 SAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS----- 150 (248)
T ss_pred HhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC-----
Confidence 4899999999431 11223567899999998887654432 22 359999997554110
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCCc
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
......|+.+|...+.+++.++.+ .|++++++|||.+..|.... -.+.......... .
T Consensus 151 ---------~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~ 212 (248)
T PRK06947 151 ---------PNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQT---------P 212 (248)
T ss_pred ---------CCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcC---------C
Confidence 011246999999999988877654 47999999999998774221 1111111111110 1
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
......++|+|+.++.++... .....|+.+.+.++
T Consensus 213 ~~~~~~~e~va~~~~~l~~~~---~~~~~G~~~~~~gg 247 (248)
T PRK06947 213 LGRAGEADEVAETIVWLLSDA---ASYVTGALLDVGGG 247 (248)
T ss_pred CCCCcCHHHHHHHHHHHcCcc---ccCcCCceEeeCCC
Confidence 112456899999999887621 12356777776653
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=144.31 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=151.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|.||++++++|.++| ++|++++|+.........+ .+.. ...++..+.+|+.|++++.++++
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~--~l~~--~~~~~~~~~~D~~~~~~i~~~~~~~~ 81 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAG-ADVALFDLRTDDGLAETAE--HIEA--AGRRAIQIAADVTSKADLRAAVARTE 81 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHH--HHHh--cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999865311000000 0100 12357789999999998887665
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++.++++|+.++..+++++. +.+..++|++||.+.+...
T Consensus 82 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 152 (254)
T PRK06114 82 AELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN--------- 152 (254)
T ss_pred HHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC---------
Confidence 3699999999432 224467789999999988777654 3455699999997654111
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+++.++. ..|+++.+++||.+.++.... -............ ....+
T Consensus 153 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~---------p~~r~ 219 (254)
T PRK06114 153 ----RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQT---------PMQRM 219 (254)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcC---------CCCCC
Confidence 111246799999999988888764 358999999999998875321 1111111111111 11235
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..++|+|.+++.++.. ......|+++.+.++
T Consensus 220 ~~~~dva~~~~~l~s~---~~~~~tG~~i~~dgg 250 (254)
T PRK06114 220 AKVDEMVGPAVFLLSD---AASFCTGVDLLVDGG 250 (254)
T ss_pred cCHHHHHHHHHHHcCc---cccCcCCceEEECcC
Confidence 5689999999987741 124567888888775
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=146.21 Aligned_cols=219 Identities=15% Similarity=0.052 Sum_probs=150.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||+++++.|+++| ++|++++|+..... ..+. +. ....++.++.+|+.|.+++.++++
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G-~~Vv~~~r~~~~~~-~~~~---~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 77 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHG-ANLILLDISPEIEK-LADE---LC--GRGHRCTAVVADVRDPASVAAAIKRAK 77 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHHHHH-HHHH---HH--HhCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 59999998753100 0000 00 012457789999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+.+..+++|+.++.++++++.. .+..++|++||.... ..
T Consensus 78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~--~~-------- 147 (263)
T PRK08226 78 EKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGD--MV-------- 147 (263)
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhc--cc--------
Confidence 4799999999421 1223455789999999999988664 345689999996431 00
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--------HHHHHHHhcCCCceEEecC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--------VPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--------~~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|...|.+++.++.+ .|++++.++|+.+.++..... .......+..+.
T Consensus 148 ----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 216 (263)
T PRK08226 148 ----ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAI------- 216 (263)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccC-------
Confidence 1123467999999999998887643 479999999999987732211 112222222221
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|+++..++... .....|+.+.+.++
T Consensus 217 --p~~~~~~~~~va~~~~~l~~~~---~~~~~g~~i~~dgg 252 (263)
T PRK08226 217 --PLRRLADPLEVGELAAFLASDE---SSYLTGTQNVIDGG 252 (263)
T ss_pred --CCCCCCCHHHHHHHHHHHcCch---hcCCcCceEeECCC
Confidence 1234568999999988776410 23567777777765
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-16 Score=145.72 Aligned_cols=220 Identities=16% Similarity=0.113 Sum_probs=151.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +.. ...++..+.+|+.|.+++.++++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~i~~~~~~~~ 79 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG-AKVVVADRDAAGGEETVAL---IRE--AGGEALFVACDVTRDAEVKALVEQTI 79 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHh--cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976421100000 100 12458889999999998887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+++... ..++++..+++|+.++.++++++. +.+..++|++||...++
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~---------- 149 (253)
T PRK06172 80 AAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG---------- 149 (253)
T ss_pred HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc----------
Confidence 3699999998421 123456788999999987766543 44567899999987763
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~---~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+......|+.+|+..|.+.+.++.+ .|+++.++.||.+-.+..... .+.......... ..
T Consensus 150 -----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~---------~~ 215 (253)
T PRK06172 150 -----AAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMH---------PV 215 (253)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccC---------CC
Confidence 1123468999999999988887644 479999999998855532211 011111111111 11
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+..++|+|..++.++... .....|+.+++.++.
T Consensus 216 ~~~~~p~~ia~~~~~l~~~~---~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 216 GRIGKVEEVASAVLYLCSDG---ASFTTGHALMVDGGA 250 (253)
T ss_pred CCccCHHHHHHHHHHHhCcc---ccCcCCcEEEECCCc
Confidence 23567899999999887521 234678888888763
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.6e-16 Score=147.16 Aligned_cols=230 Identities=11% Similarity=0.067 Sum_probs=153.4
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.....++++++||||+|.||++++++|+++| ++|++++|+........+. +.. ....++..+.+|++|++++.+
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~Dv~~~~~i~~ 75 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREK---IKS-ESNVDVSYIVADLTKREDLER 75 (263)
T ss_pred CCccCCCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-hcCCceEEEEecCCCHHHHHH
Confidence 43334467899999999999999999999999 5999999875421000000 000 113468899999999999887
Q ss_pred HHh------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCC
Q 012270 81 VLE------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 81 ~~~------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~ 143 (467)
+++ ++|++||+||... +.+++...+++|+.++..+.+++ ++.+..++|++||...+.
T Consensus 76 ~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~------ 149 (263)
T PRK08339 76 TVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE------ 149 (263)
T ss_pred HHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC------
Confidence 765 4899999998421 23456778999988766665554 445567999999986541
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-----------HHHHHHhcCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPG 209 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-----------~~~~~~~~~g 209 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+...... +.........
T Consensus 150 ---------~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T PRK08339 150 ---------PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP 220 (263)
T ss_pred ---------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc
Confidence 1122457999999999888777543 5899999999988554211000 0111111110
Q ss_pred CceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 210 ~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
.....+..++|+|.+++.++... .....|+.+.+.++...|
T Consensus 221 ---------~p~~r~~~p~dva~~v~fL~s~~---~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 221 ---------IPLGRLGEPEEIGYLVAFLASDL---GSYINGAMIPVDGGRLNS 261 (263)
T ss_pred ---------CCcccCcCHHHHHHHHHHHhcch---hcCccCceEEECCCcccc
Confidence 11234667899999999887521 234678888887765444
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-16 Score=146.41 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=151.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
+.++++++||||+|.||+++++.|+++| ++|++++|+........+. +.. ...++..+.+|++|++++.++++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLADE---IGT--SGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH---HHh--cCCeEEEEEccCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 5999999875411000000 000 12457788999999998877764
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+|+... ...+++..+++|+.++..+.+++... + -.++|++||.+..-..
T Consensus 80 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------ 153 (253)
T PRK05867 80 VTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN------ 153 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC------
Confidence 5899999999432 12345667899999999999987643 2 2479999987532000
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
.+.....|+.+|+..+.+++.++.+ .|+++..++||.+-.+..... +.......... ...
T Consensus 154 -------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~-~~~~~~~~~~~---------~~~ 216 (253)
T PRK05867 154 -------VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY-TEYQPLWEPKI---------PLG 216 (253)
T ss_pred -------CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc-hHHHHHHHhcC---------CCC
Confidence 0112357999999999999888643 489999999999976643221 11111121111 112
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+..++|+|++++.++.. ......|+.+.+.++.
T Consensus 217 r~~~p~~va~~~~~L~s~---~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 217 RLGRPEELAGLYLYLASE---ASSYMTGSDIVIDGGY 250 (253)
T ss_pred CCcCHHHHHHHHHHHcCc---ccCCcCCCeEEECCCc
Confidence 456799999999988751 1234678888887763
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-16 Score=146.26 Aligned_cols=217 Identities=15% Similarity=0.133 Sum_probs=149.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|.||+++++.|+++| ++|++++|+...... +.+.. ..++.++.+|+.|.+++.++++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAG-ARVAIVDIDADNGAA-------VAASL-GERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCeeEEEEecCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599999997641100 00001 2357889999999998887765
Q ss_pred ----CCCEEEEcccCC------CCCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATD------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~------~~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
.+|++||+|+.. ...++++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 76 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------- 142 (261)
T PRK08265 76 ARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------- 142 (261)
T ss_pred HHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc-------------
Confidence 479999999842 123445678999999999998877642 335899999976541
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH---HHHHHhcCCCceEEecCCCccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP---LLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~---~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..+.+++.++.+ .|+++++++|+.+..+....... ......... ......+
T Consensus 143 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~--------~~p~~r~ 212 (261)
T PRK08265 143 --AQTGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP--------FHLLGRV 212 (261)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc--------cCCCCCc
Confidence 1123457999999999988877533 58999999999876553211000 000000000 0111235
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..++|+|++++.++... .....|+.+.+.++
T Consensus 213 ~~p~dva~~~~~l~s~~---~~~~tG~~i~vdgg 243 (261)
T PRK08265 213 GDPEEVAQVVAFLCSDA---ASFVTGADYAVDGG 243 (261)
T ss_pred cCHHHHHHHHHHHcCcc---ccCccCcEEEECCC
Confidence 67899999999887521 23457888888876
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=141.79 Aligned_cols=218 Identities=15% Similarity=0.067 Sum_probs=147.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC-cCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
|+++||||+|+||+++++.|+++|+ +|+++.|...... +. .... .....++..+.+|+.|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~---~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERA---EA--WLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEA 74 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHH---HH--HHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999994 8988887321100 00 0000 0112468899999999998877664
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+++... ...++...+++|+.++..++++ +++.+.+++|++||.....
T Consensus 75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~------------ 142 (242)
T TIGR01829 75 ELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK------------ 142 (242)
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC------------
Confidence 4799999998432 2234566788999998775554 4556778999999974431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+......|+.+|...+.+++.++. ..|++++.++|+.+.++......+.+........+ ...+..
T Consensus 143 ---~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~~~ 210 (242)
T TIGR01829 143 ---GQFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIP---------VGRLGR 210 (242)
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCC---------CCCCcC
Confidence 112346799999988887777643 25899999999999887654333333333332221 123445
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+|++.++..++.. ......|+.+.+.++.
T Consensus 211 ~~~~a~~~~~l~~~---~~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASE---EAGYITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCc---hhcCccCCEEEecCCc
Confidence 68999988776541 0123578888888863
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=136.25 Aligned_cols=287 Identities=16% Similarity=0.154 Sum_probs=189.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHH-----HHHhcC---CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVL-----RLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS 76 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~-----~Ll~~g---~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 76 (467)
+.+..+.++-+++|+|+..|.. ++-+.+ .|+|+++.|.+.+. ++.+-+.|..-..
T Consensus 9 ~~~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-----------------ritw~el~~~Gip 71 (315)
T KOG3019|consen 9 SGKSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-----------------RITWPELDFPGIP 71 (315)
T ss_pred CCccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-----------------ccccchhcCCCCc
Confidence 3345677888999999988877 333333 14899999988621 2222222221100
Q ss_pred HHHHHHhCCCEEEEcccC--CCCCCChh-----hHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCCCCCC
Q 012270 77 QIKKVLEGASTVFYVDAT--DLNTDDFY-----NCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 77 ~l~~~~~~~D~Vih~aa~--~~~~~~~~-----~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
-.||+++++++. ......+. +....-+..|..|+++...+. .+.+|.+|..++| .+.....++
T Consensus 72 ------~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y--~pS~s~eY~ 143 (315)
T KOG3019|consen 72 ------ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVY--VPSESQEYS 143 (315)
T ss_pred ------eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEe--ccccccccc
Confidence 024555555551 11111222 333334455788899988873 4689999999999 444445677
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHH-HhcCCCceEEecCCCccccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN-LAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~-~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
|+. +....+...+.-..-|...+..++ ..+++++|.|.|.|.+...+-.+++. ++-.|++ .|+|+++++|||
T Consensus 144 e~~--~~qgfd~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa~~~M~lpF~~g~GGP---lGsG~Q~fpWIH 216 (315)
T KOG3019|consen 144 EKI--VHQGFDILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGALAMMILPFQMGAGGP---LGSGQQWFPWIH 216 (315)
T ss_pred ccc--ccCChHHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcchhhhhhhhhhccCCc---CCCCCeeeeeee
Confidence 776 445566676766677777776654 38999999999999976532222211 2345554 589999999999
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccc
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
++|++..+..+++ .+...| +.|-..+++.+..||.+.+.++++.+. .+.+|..+++. ++|+..
T Consensus 217 v~DL~~li~~ale-----~~~v~G-ViNgvAP~~~~n~Ef~q~lg~aL~Rp~-~~pvP~fvvqA----------~fG~er 279 (315)
T KOG3019|consen 217 VDDLVNLIYEALE-----NPSVKG-VINGVAPNPVRNGEFCQQLGSALSRPS-WLPVPDFVVQA----------LFGPER 279 (315)
T ss_pred hHHHHHHHHHHHh-----cCCCCc-eecccCCCccchHHHHHHHHHHhCCCc-ccCCcHHHHHH----------HhCccc
Confidence 9999999999999 466677 999999999999999999999999764 45788766533 334322
Q ss_pred cCCCCchHHHHHHhccceEeehhhHhhhCCCcccc-ChHHHHHHHH
Q 012270 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTI 351 (467)
Q Consensus 307 ~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~i~~~i 351 (467)
. ...-....+-..|+.. +||+.++ .+.|++++..
T Consensus 280 A----------~~vLeGqKV~Pqral~-~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 280 A----------TVVLEGQKVLPQRALE-LGFEFKYPYVKDALRAIM 314 (315)
T ss_pred e----------eEEeeCCcccchhHhh-cCceeechHHHHHHHHHh
Confidence 1 1111123345667766 8999887 5777777653
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-16 Score=146.20 Aligned_cols=212 Identities=13% Similarity=0.101 Sum_probs=139.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA-- 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 85 (467)
||+++||||+|+||++++++|+++| ++|++++|.+...... +.+ ....+++++.+|++|++++.++++.+
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g-~~V~~~~r~~~~~~~~------~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG-THVISISRTENKELTK------LAE-QYNSNLTFHSLDLQDVHELETNFNEILS 72 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC-CEEEEEeCCchHHHHH------HHh-ccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 5999999876311100 011 11346888999999999988777532
Q ss_pred ---------CEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hC-CCCeEEEEcCccccccCCCCC
Q 012270 86 ---------STVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----EC-KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 86 ---------D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~-~v~r~v~~SS~~vyg~~~~~~ 143 (467)
+++||+||... ..+++...+++|+.++..+++++. +. +.+++|++||...+.
T Consensus 73 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------ 146 (251)
T PRK06924 73 SIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN------ 146 (251)
T ss_pred hcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC------
Confidence 27899988321 223356678889998766665544 32 346899999976531
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcH----H--HHHHHhcCCCce
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLV----P--LLVNLAKPGWTK 212 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~----~--~~~~~~~~g~~~ 212 (467)
+..+...|+.+|+..|.+++.++.+ .++++..++||.+-.+...... . ........
T Consensus 147 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~---- 213 (251)
T PRK06924 147 ---------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFIT---- 213 (251)
T ss_pred ---------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHH----
Confidence 2234578999999999999877533 4799999999877544211000 0 00000000
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEE
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni 255 (467)
.. ....+..++|+|++++.++.. .....|+.+.+
T Consensus 214 -~~----~~~~~~~~~dva~~~~~l~~~----~~~~~G~~~~v 247 (251)
T PRK06924 214 -LK----EEGKLLSPEYVAKALRNLLET----EDFPNGEVIDI 247 (251)
T ss_pred -Hh----hcCCcCCHHHHHHHHHHHHhc----ccCCCCCEeeh
Confidence 00 011357899999999999872 13445655544
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=166.77 Aligned_cols=229 Identities=18% Similarity=0.184 Sum_probs=151.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +........+..+.+|++|.+++.++++
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~G-a~Vvi~~r~~~~~~~~~~~---l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~ 488 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEG-AHVVLADLNLEAAEAVAAE---INGQFGAGRAVALKMDVTDEQAVKAAFADVA 488 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHH---HHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999875421000000 0000112356788999999999888776
Q ss_pred ----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHH----hCC-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~----~~~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||.... ..++...+++|+.+...+.+++. +.+ -.++|++||...+.
T Consensus 489 ~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~---------- 558 (676)
T TIGR02632 489 LAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY---------- 558 (676)
T ss_pred HhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC----------
Confidence 58999999994321 12356778899988777654443 333 24899999975542
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc-cCCC--CCcHHHHHHHh-cCCCce----EEec
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGD--TQLVPLLVNLA-KPGWTK----FIIG 216 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~-G~~~--~~~~~~~~~~~-~~g~~~----~~~g 216 (467)
+......|+.+|+..|.+++.++.+ .|+++..++|+.++ |.+. .... .... ..+... ..+.
T Consensus 559 -----~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 630 (676)
T TIGR02632 559 -----AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWR---EERAAAYGIPADELEEHYA 630 (676)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccch---hhhhhcccCChHHHHHHHH
Confidence 1123568999999999999887643 57999999999887 3321 1110 0000 000000 0011
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.......+++++|+|+++..++... .....|+.+++.++..
T Consensus 631 ~r~~l~r~v~peDVA~av~~L~s~~---~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 KRTLLKRHIFPADIAEAVFFLASSK---SEKTTGCIITVDGGVP 671 (676)
T ss_pred hcCCcCCCcCHHHHHHHHHHHhCCc---ccCCcCcEEEECCCch
Confidence 1223456789999999999887421 2345688999988643
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-16 Score=148.31 Aligned_cols=220 Identities=15% Similarity=0.166 Sum_probs=149.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|.||++++++|+++|+ .|++++|++......... +.. ...++.++.+|++|++++.++++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQ---LQQ--AGPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---HHH--hCCceEEEECCCCCHHHHHHHHHHHH
Confidence 457999999999999999999999994 899999876421100000 110 12356788999999998887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... ..+++...+++|+.++.++++++... .-.++|++||...+.
T Consensus 82 ~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~------------ 149 (264)
T PRK07576 82 DEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV------------ 149 (264)
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc------------
Confidence 3799999997321 22345678889999999999988653 125899999975541
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCC-CCCcHHH-HH-HHhcCCCceEEecCCCcccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG-DTQLVPL-LV-NLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~-~~~~~~~-~~-~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|...|.+++.++.+ .|++++.++|+.+.+.. .....+. .. ...... .....
T Consensus 150 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~---------~~~~~ 217 (264)
T PRK07576 150 ---PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS---------VPLKR 217 (264)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc---------CCCCC
Confidence 1133468999999999998887543 57999999999887532 1111110 00 011110 11234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+...+|+|++++.++... .....|+.+.+.++.
T Consensus 218 ~~~~~dva~~~~~l~~~~---~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 218 NGTKQDIANAALFLASDM---ASYITGVVLPVDGGW 250 (264)
T ss_pred CCCHHHHHHHHHHHcChh---hcCccCCEEEECCCc
Confidence 677899999999988621 123567777777753
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-16 Score=146.58 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=120.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
||+++||||+|+||++++++|+++| ++|++++|+..... ......++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G-~~v~~~~r~~~~~~----------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG-IAVLGVARSRHPSL----------AAAAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC-CEEEEEecCcchhh----------hhccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 59999998754211 00112468889999999998877432
Q ss_pred -------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCC
Q 012270 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
+.|++||+|+... ..+++...+++|+.++..+.+.+.+ .+.+++|++||...+.
T Consensus 70 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 142 (243)
T PRK07023 70 AAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN------- 142 (243)
T ss_pred HHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC-------
Confidence 3689999998432 1233567889999997776665543 3567999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGP 193 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~--~g~~~~ilRp~~i~G~ 193 (467)
+..+...|+.+|...|.+++.++.+ .|+++.+++|+.+-.+
T Consensus 143 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 --------AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 2234568999999999999977643 5899999999887443
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=147.26 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=137.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||+++++.|+++| ++|++++|+........+. +.. ...++..+.+|+.|.+++.++++
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R~~~~l~~~~~~---l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRG-ATVVAVARREDLLDAVADR---ITR--AGGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 5999999976411000000 000 12357789999999999888776
Q ss_pred ----CCCEEEEcccCCCC---------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~---------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||.... ..+.+..+++|+.|+.++++++. +.+..++|++||.+++..
T Consensus 113 ~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 184 (293)
T PRK05866 113 KRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE-------- 184 (293)
T ss_pred HHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC--------
Confidence 68999999984321 12345688999999888887654 556789999999766521
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|+..+.+++.++. ..|+++++++||.+-.+.... .. .. .+ ..
T Consensus 185 ------~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~-----------~~--~~--~~---~~ 240 (293)
T PRK05866 185 ------ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP-----------TK--AY--DG---LP 240 (293)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc-----------cc--cc--cC---CC
Confidence 012246899999999988777643 358999999998775442110 00 00 01 12
Q ss_pred ccchhHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAE 239 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~ 239 (467)
.+..+++|+.++.+++
T Consensus 241 ~~~pe~vA~~~~~~~~ 256 (293)
T PRK05866 241 ALTADEAAEWMVTAAR 256 (293)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4678999999999987
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=143.83 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=149.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|.||++++++|.++| ++|+++++...... .+. +.. ...++..+.+|+.|.+++.++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G-~~vv~~~~~~~~~~--~~~---~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 79 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAG-CDIVGINIVEPTET--IEQ---VTA--LGRRFLSLTADLRKIDGIPALLERA 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEecCcchHHH--HHH---HHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 58988877542100 000 111 12357788999999998887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... ...+++..+++|+.++.++++++... + -.++|++||...+...
T Consensus 80 ~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 152 (253)
T PRK08993 80 VAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG------- 152 (253)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC-------
Confidence 4899999999432 22457789999999999999887643 2 2489999998776211
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~~~~~~g~g~~~ 221 (467)
.....|+.+|+..|.+.+.++.+ .|++++.++||.+-.+......+ ......... ++ .
T Consensus 153 --------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~----~p-----~ 215 (253)
T PRK08993 153 --------IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDR----IP-----A 215 (253)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhc----CC-----C
Confidence 12347999999999988877654 58999999999996653221100 111111111 11 1
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+...+|+|.+++.++... .....|+.+.+.++
T Consensus 216 ~r~~~p~eva~~~~~l~s~~---~~~~~G~~~~~dgg 249 (253)
T PRK08993 216 GRWGLPSDLMGPVVFLASSA---SDYINGYTIAVDGG 249 (253)
T ss_pred CCCcCHHHHHHHHHHHhCcc---ccCccCcEEEECCC
Confidence 23666899999999887521 23456777776654
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=144.22 Aligned_cols=221 Identities=17% Similarity=0.115 Sum_probs=150.6
Q ss_pred CCCEEEEEcCCC-hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRG-FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatG-fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+++++||||+| -||+++++.|+++| +.|++.+|+........+. +.......++..+.+|++|++++.++++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG-ARVVISDIHERRLGETADE---LAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 358999999998 59999999999999 5899998865411000000 1110112357889999999998887664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+|+... ..+++...+++|+.++..+++++... + -.++|++||...+ .
T Consensus 92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~--~------- 162 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW--R------- 162 (262)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc--C-------
Confidence 4799999999421 12345678889999999988887642 2 3578898886443 1
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCCCccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+++.++.+ +|+++++++|+.+..|..... -+..........+ ..
T Consensus 163 ------~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~ 227 (262)
T PRK07831 163 ------AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREA---------FG 227 (262)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCC---------CC
Confidence 1134468999999999999988643 689999999999988753221 1222222222221 12
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+..++|+|++++.++... .....|+.+.+.++
T Consensus 228 r~~~p~~va~~~~~l~s~~---~~~itG~~i~v~~~ 260 (262)
T PRK07831 228 RAAEPWEVANVIAFLASDY---SSYLTGEVVSVSSQ 260 (262)
T ss_pred CCcCHHHHHHHHHHHcCch---hcCcCCceEEeCCC
Confidence 3556899999999887521 23457777777664
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=142.33 Aligned_cols=218 Identities=14% Similarity=0.137 Sum_probs=148.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+|+++||||+|.||+++++.|+++| +.|++++|+.......... +.. ...++..+.+|++|++++.++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G-~~Vi~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLE---IEQ--FPGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 5999999876411000000 000 12468889999999998877654
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+++... +.++++.++++|+.++.++++++.+. + -.++|++||...+ .
T Consensus 75 ~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~--~--------- 143 (252)
T PRK07677 75 KFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAW--D--------- 143 (252)
T ss_pred HhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhc--c---------
Confidence 4799999998321 22335778999999999999998532 2 3589999987443 1
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhc----CCCCceEEEEeCCCcccCCCC-Cc--HHHHHHHhcCCCceEEecCCCcc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFAN----NIDGLLTCALRPSNVFGPGDT-QL--VPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~----~~~g~~~~ilRp~~i~G~~~~-~~--~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+......|+.+|...+.+.+.++ ..+|+++..++||.+..+... .. -+...+.+.+..+ .
T Consensus 144 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~---------~ 210 (252)
T PRK07677 144 ----AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVP---------L 210 (252)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCC---------C
Confidence 11233579999999999888753 335899999999998754211 11 1122222222111 1
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+...+|+|+++..++.. ......|+.+.+.++
T Consensus 211 ~~~~~~~~va~~~~~l~~~---~~~~~~g~~~~~~gg 244 (252)
T PRK07677 211 GRLGTPEEIAGLAYFLLSD---EAAYINGTCITMDGG 244 (252)
T ss_pred CCCCCHHHHHHHHHHHcCc---cccccCCCEEEECCC
Confidence 2466789999988877641 023467788888776
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=124.83 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=147.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|.|+||||-+|+.++++++++|| +|+++.|++++.. ..+++..++.|+-|++++.+.+.|.|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~-------------~~~~~~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLA-------------ARQGVTILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhcc-------------ccccceeecccccChhhhHhhhcCCceE
Confidence 6899999999999999999999996 9999999987211 1157889999999999999999999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc---CCCCCChHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC---CWKFQDLMCDLKA 165 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~---~~~~~~~Y~~sK~ 165 (467)
|..-+.....++. ........+++..+..+++|++.++.++.. .++|+... |.-|...|...+.
T Consensus 67 IsA~~~~~~~~~~-----~~~k~~~~li~~l~~agv~RllVVGGAGSL--------~id~g~rLvD~p~fP~ey~~~A~~ 133 (211)
T COG2910 67 ISAFGAGASDNDE-----LHSKSIEALIEALKGAGVPRLLVVGGAGSL--------EIDEGTRLVDTPDFPAEYKPEALA 133 (211)
T ss_pred EEeccCCCCChhH-----HHHHHHHHHHHHHhhcCCeeEEEEcCccce--------EEcCCceeecCCCCchhHHHHHHH
Confidence 9776644322221 123336678888888999999988876543 23333211 4556677888999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccc
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~ 245 (467)
.+|.+ ..+..+..++|+.+-|+..|-|+.+.- ..+-|+-...... .--++|...|.|-+++..++ .
T Consensus 134 ~ae~L-~~Lr~~~~l~WTfvSPaa~f~PGerTg------~yrlggD~ll~n~--~G~SrIS~aDYAiA~lDe~E-----~ 199 (211)
T COG2910 134 QAEFL-DSLRAEKSLDWTFVSPAAFFEPGERTG------NYRLGGDQLLVNA--KGESRISYADYAIAVLDELE-----K 199 (211)
T ss_pred HHHHH-HHHhhccCcceEEeCcHHhcCCccccC------ceEeccceEEEcC--CCceeeeHHHHHHHHHHHHh-----c
Confidence 88843 222223559999999999999976521 1122332233322 22478889999999999999 4
Q ss_pred ccCCCcEEEE
Q 012270 246 VSVAGMAFFI 255 (467)
Q Consensus 246 ~~~~g~~yni 255 (467)
+....+.|-+
T Consensus 200 ~~h~rqRftv 209 (211)
T COG2910 200 PQHIRQRFTV 209 (211)
T ss_pred ccccceeeee
Confidence 5666665544
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=138.22 Aligned_cols=194 Identities=16% Similarity=0.087 Sum_probs=134.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC-CcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..++++||||+|.||++++++|+++|.++|++++|++...... .++ +.. ....+++++.+|+.|.+++.++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~---l~~-~~~~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQ---MKA-AGASSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHH---HHh-cCCCceEEEEecCCChHHHHHHHHHH
Confidence 4679999999999999999999999535999999976521000 000 111 112368899999999988665543
Q ss_pred ----CCCEEEEcccCCCC----CCCh---hhHHHhhHHHHHH----HHHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN----TDDF---YNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~----~~~~---~~~~~~nv~g~~~----ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+.|++||++|.... ..++ ...+++|+.++.+ +++++++.+..++|++||...+.
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~----------- 151 (253)
T PRK07904 83 FAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER----------- 151 (253)
T ss_pred HhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC-----------
Confidence 58999999985321 1122 2468999998876 56677777788999999985431
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.||+..+.+.+.++ ..+|+++++++||.+..+.... . . . . ...+
T Consensus 152 ----~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~--------~-~-~------~----~~~~ 207 (253)
T PRK07904 152 ----VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAH--------A-K-E------A----PLTV 207 (253)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhcc--------C-C-C------C----CCCC
Confidence 11234579999999886655543 3368999999999987542110 0 0 0 0 1236
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
..+|+|+.++.+++
T Consensus 208 ~~~~~A~~i~~~~~ 221 (253)
T PRK07904 208 DKEDVAKLAVTAVA 221 (253)
T ss_pred CHHHHHHHHHHHHH
Confidence 79999999999987
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-15 Score=135.47 Aligned_cols=185 Identities=18% Similarity=0.141 Sum_probs=136.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---GA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~~ 85 (467)
|+++||||+|.||.++++.|.++ ++|.+++|+.. .+.+|++|.++++++++ ++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~r~~~----------------------~~~~D~~~~~~~~~~~~~~~~i 56 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAGRSSG----------------------DVQVDITDPASIRALFEKVGKV 56 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCCC----------------------ceEecCCChHHHHHHHHhcCCC
Confidence 58999999999999999999988 48999887542 35789999999988876 58
Q ss_pred CEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCC
Q 012270 86 STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (467)
Q Consensus 86 D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~ 156 (467)
|+|||+||... ...++...+++|+.++.++.+++... +-.+++++||.... . +...
T Consensus 57 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~--~-------------~~~~ 121 (199)
T PRK07578 57 DAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD--E-------------PIPG 121 (199)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC--C-------------CCCC
Confidence 99999999421 22346678899999999999988753 33579999986542 1 1123
Q ss_pred CChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHH
Q 012270 157 QDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~--~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~ 234 (467)
...|+.+|...+.+.+.++.+ .|+++..+.|+.+-.+. ... +. ..++ ..++.++|+|+++
T Consensus 122 ~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~-----~~~------~~--~~~~-----~~~~~~~~~a~~~ 183 (199)
T PRK07578 122 GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESL-----EKY------GP--FFPG-----FEPVPAARVALAY 183 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCch-----hhh------hh--cCCC-----CCCCCHHHHHHHH
Confidence 468999999999988877653 58999999998773221 100 00 0111 2367899999999
Q ss_pred HHHHHHhccccccCCCcEEEEc
Q 012270 235 VCAAEALDSRMVSVAGMAFFIT 256 (467)
Q Consensus 235 ~~al~~~~~~~~~~~g~~yni~ 256 (467)
+.+++ ....|++|+++
T Consensus 184 ~~~~~------~~~~g~~~~~~ 199 (199)
T PRK07578 184 VRSVE------GAQTGEVYKVG 199 (199)
T ss_pred HHHhc------cceeeEEeccC
Confidence 98886 34677787753
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=144.23 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=148.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|.||+++++.|+++| ++|++++|+.. .....+. +.+ ...++..+.+|++|++++.++++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~~~-~~~~~~~---~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIAEA-VSETVDK---IKS--NGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHH-HHHHHHH---HHh--cCCeEEEEEeecCCHHHHHHHHHHH
Confidence 357899999999999999999999999 59999998732 1000000 100 12357889999999988877654
Q ss_pred -----CCCEEEEcccCCCC--------CCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~--------~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+|+.... .+.++..+++|+.++..+.+++.. .+ .++|++||.+.+.
T Consensus 77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 146 (272)
T PRK08589 77 KEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQA--------- 146 (272)
T ss_pred HHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcC---------
Confidence 37999999984321 123456788999998777776543 34 6899999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH----HHHHHhcCCCceEEecCCC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~----~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+++.++.+ .|++++.+.||.+..+....... .+......... .. .
T Consensus 147 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~----~ 215 (272)
T PRK08589 147 ------ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQK-WM----T 215 (272)
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhh-cc----C
Confidence 1123468999999999998887643 57999999999987663221100 00000000000 00 0
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|++++.++... .....|+.+.+.++
T Consensus 216 ~~~~~~~~~~va~~~~~l~s~~---~~~~~G~~i~vdgg 251 (272)
T PRK08589 216 PLGRLGKPEEVAKLVVFLASDD---SSFITGETIRIDGG 251 (272)
T ss_pred CCCCCcCHHHHHHHHHHHcCch---hcCcCCCEEEECCC
Confidence 1123567999999999887521 23557888888776
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-15 Score=136.11 Aligned_cols=197 Identities=16% Similarity=0.028 Sum_probs=140.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
|++++||||+|+||++++++|+++| ++|++++|.+... + .....+++++.+|++|.+++.++++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G-~~v~~~~r~~~~~----~-------~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG-WRVIATARDAAAL----A-------ALQALGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC-CEEEEEECCHHHH----H-------HHHhccceEEEecCCCHHHHHHHHHHhcC
Confidence 5689999999999999999999999 5999999875411 0 0111246789999999998887642
Q ss_pred -CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccc-cccCCCCCCCCCCC
Q 012270 84 -GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADV-VFDGSHDIHNGDET 149 (467)
Q Consensus 84 -~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~v-yg~~~~~~~~~~E~ 149 (467)
++|+|||+++... ..++++..+++|+.++.++++++... +-.+++++||... ++..
T Consensus 69 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 138 (222)
T PRK06953 69 EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA---------- 138 (222)
T ss_pred CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc----------
Confidence 3899999998431 22346779999999999999998752 2347899998643 3210
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
+..+...|+.+|...+.+++.++.+. +++++.++|+.+..+... + ...+..+
T Consensus 139 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~--------------------~----~~~~~~~ 191 (222)
T PRK06953 139 ---TGTTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG--------------------A----QAALDPA 191 (222)
T ss_pred ---cCCCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC--------------------C----CCCCCHH
Confidence 11223469999999999999887544 789999999988655311 0 1135678
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEc
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~ 256 (467)
|.+..+..++... .....|..|...
T Consensus 192 ~~~~~~~~~~~~~---~~~~~~~~~~~~ 216 (222)
T PRK06953 192 QSVAGMRRVIAQA---TRRDNGRFFQYD 216 (222)
T ss_pred HHHHHHHHHHHhc---CcccCceEEeeC
Confidence 9999998887632 234555555444
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=140.59 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=145.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| ++|++++|++....... .......+++.+.+|++|++++.++++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~------~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG-AQVCINSRNENKLKRMK------KTLSKYGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH------HHHHhcCCeEEEECCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 59999999764110000 000112357889999999998877654
Q ss_pred ----CCCEEEEcccCCC-----CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 ----GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-----~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++|++||+++... ..++.+..++.|+.++.++++.+... .-.++|++||..... +
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-~------------- 142 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY-K------------- 142 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc-c-------------
Confidence 3699999998322 11234566889999988888877654 225799999875421 0
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
+..+...|+.+|...+.+++.++.. .|++++++||+.++++..... .+ ... ... ...++..+|
T Consensus 143 ~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~--~~-~~~------~~~-----~~~~~~~~~ 208 (238)
T PRK05786 143 ASPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER--NW-KKL------RKL-----GDDMAPPED 208 (238)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh--hh-hhh------ccc-----cCCCCCHHH
Confidence 1123457999999998887776643 489999999999998743210 00 000 000 113566799
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
++++++.++... .....|+.+.+.++
T Consensus 209 va~~~~~~~~~~---~~~~~g~~~~~~~~ 234 (238)
T PRK05786 209 FAKVIIWLLTDE---ADWVDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHhccc---ccCccCCEEEECCc
Confidence 999999988621 12346777777654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=144.11 Aligned_cols=224 Identities=16% Similarity=0.126 Sum_probs=144.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
++++||||+|+||.+++++|+++| ++|++++|+.......... +. ....++..+.+|++|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG-FAVAVADLNEETAKETAKE---IN--QAGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999 4999998875311000000 00 012357889999999999887754
Q ss_pred --CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
.+|+|||+++... ...+++..+++|+.++..+++++.. .+ -.++|++||.....
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 142 (254)
T TIGR02415 75 FGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE------------ 142 (254)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC------------
Confidence 4799999998422 2234567899999999887776653 23 26899999975431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE----EecCCCccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF----IIGSGENMS 222 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~----~~g~g~~~~ 222 (467)
+......|+.+|...|.+++.++.+ .++++++++|+.+..+........... ..+.+.. .+.......
T Consensus 143 ---~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 217 (254)
T TIGR02415 143 ---GNPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSE--IAGKPIGEGFEEFSSEIALG 217 (254)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhh--cccCchHHHHHHHHhhCCCC
Confidence 1123568999999999998876533 479999999998865532111100000 0000000 000001112
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+..++|+++++..++... .....|+.+.+.++
T Consensus 218 ~~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~d~g 250 (254)
T TIGR02415 218 RPSEPEDVAGLVSFLASED---SDYITGQSILVDGG 250 (254)
T ss_pred CCCCHHHHHHHHHhhcccc---cCCccCcEEEecCC
Confidence 4778899999999988731 12345666666554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=141.43 Aligned_cols=225 Identities=14% Similarity=0.051 Sum_probs=147.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++++++||||+|.||+++++.|+++| ++|++++|+........+. +.......++..+.+|++|.+++.++++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEAR---LREKFPGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHH---HHhhCCCceEEEEEecCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 5999999976421100000 1111112357789999999998876654
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ...++...+++|+.++..+.+++. +.+..++|++||...+.
T Consensus 81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 151 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ--------- 151 (265)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC---------
Confidence 4799999999422 123456788889888777666554 34557999999986541
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH----------HHHHHHhcCCCceE
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV----------PLLVNLAKPGWTKF 213 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~----------~~~~~~~~~g~~~~ 213 (467)
+......|+.+|+..+.+.+.++.+ .|++++.++||.+-.+...... ..+........
T Consensus 152 ------~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (265)
T PRK07062 152 ------PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKK--- 222 (265)
T ss_pred ------CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcC---
Confidence 1122357999999888877765432 5899999999988655321111 01111110000
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.-....+...+|+|.+++.++... .....|+.+.+.++
T Consensus 223 ----~~p~~r~~~p~~va~~~~~L~s~~---~~~~tG~~i~vdgg 260 (265)
T PRK07062 223 ----GIPLGRLGRPDEAARALFFLASPL---SSYTTGSHIDVSGG 260 (265)
T ss_pred ----CCCcCCCCCHHHHHHHHHHHhCch---hcccccceEEEcCc
Confidence 011224667899999999877511 23467888888765
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=141.80 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=138.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........ .......++.++.+|+.|++++.++++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~------~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALA------ARLPYPGRHRWVVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH------HHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 59999999764211000 000113468899999999998877654
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... ...+...++++|+.|+.++++++.. .+..++|++||...+.
T Consensus 77 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------ 144 (263)
T PRK09072 77 EMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI------------ 144 (263)
T ss_pred hcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc------------
Confidence 4799999998432 1233467888999999999998864 2446899998864431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+......|+.+|...+.+++.++.+ .+++++++.|+.+..+.... .. . . ... ........
T Consensus 145 ---~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~----~~----~-~---~~~--~~~~~~~~ 207 (263)
T PRK09072 145 ---GYPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE----AV----Q-A---LNR--ALGNAMDD 207 (263)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh----hc----c-c---ccc--cccCCCCC
Confidence 1123467999999988877776532 57999999998886543211 00 0 0 000 00113567
Q ss_pred hhHHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAE 239 (467)
Q Consensus 227 v~Dva~a~~~al~ 239 (467)
++|+|++++.+++
T Consensus 208 ~~~va~~i~~~~~ 220 (263)
T PRK09072 208 PEDVAAAVLQAIE 220 (263)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999998
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=141.13 Aligned_cols=217 Identities=13% Similarity=0.063 Sum_probs=148.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+..... . +.... ..++..+.+|++|.+++.++++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKLA----S---LRQRF-GDHVLVVEGDVTSYADNQRAVDQTV 75 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH----H---HHHHh-CCcceEEEccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 59999998764110 0 00101 2357889999999988877654
Q ss_pred ----CCCEEEEcccCCCC-----C---C----ChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCC
Q 012270 84 ----GASTVFYVDATDLN-----T---D----DFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~-----~---~----~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+|+.... . + .++..+++|+.++..+++++... .-.++|++||...+.
T Consensus 76 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------- 148 (263)
T PRK06200 76 DAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY------- 148 (263)
T ss_pred HhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC-------
Confidence 48999999994321 1 1 14567889999999988887643 124799999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc-----------HHHHHHHhcCCCc
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPGWT 211 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~-----------~~~~~~~~~~g~~ 211 (467)
+..+...|+.+|+..+.+++.++.+. ++++..+.||.+..+..... .+........
T Consensus 149 --------~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (263)
T PRK06200 149 --------PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAA--- 217 (263)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhc---
Confidence 11234579999999999988876542 48999999999865532110 0001111111
Q ss_pred eEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 212 ~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
......+..++|+|.+++.++... ......|+.+.+.++
T Consensus 218 ------~~p~~r~~~~~eva~~~~fl~s~~--~~~~itG~~i~vdgG 256 (263)
T PRK06200 218 ------ITPLQFAPQPEDHTGPYVLLASRR--NSRALTGVVINADGG 256 (263)
T ss_pred ------CCCCCCCCCHHHHhhhhhheeccc--ccCcccceEEEEcCc
Confidence 112234677899999999887510 013457888888765
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-15 Score=143.77 Aligned_cols=201 Identities=11% Similarity=0.007 Sum_probs=139.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+++++||||+|.||+++++.|.++| ++|++++|+........+. +.. ...++..+.+|++|.+++.++++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~---~~~--~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRG-ARLVLAARDEEALQAVAEE---CRA--LGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHh--cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976421100000 000 12357788999999999887763
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... ..++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 79 ~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~---------- 148 (330)
T PRK06139 79 ASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA---------- 148 (330)
T ss_pred HHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC----------
Confidence 4899999998322 123345689999999999877764 34456899999986652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhh----cCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFA----NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~----~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|+..+.+.+.+ .+..|++++.+.|+.+..|....... . .+.. ......
T Consensus 149 -----~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~-----~-~~~~------~~~~~~ 211 (330)
T PRK06139 149 -----AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN-----Y-TGRR------LTPPPP 211 (330)
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc-----c-cccc------ccCCCC
Confidence 1123468999999755555444 33348999999999998775321100 0 0110 011234
Q ss_pred ccchhHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAE 239 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~ 239 (467)
+.+++|+|++++.+++
T Consensus 212 ~~~pe~vA~~il~~~~ 227 (330)
T PRK06139 212 VYDPRRVAKAVVRLAD 227 (330)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6789999999999987
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-15 Score=143.75 Aligned_cols=206 Identities=17% Similarity=0.074 Sum_probs=142.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
+..+++++||||+|.||.++++.|.++| ++|++++|+........+ .......+..+.+|++|.+++.++++
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~------~l~~~~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARG-AKLALVDLEEAELAALAA------ELGGDDRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH------HhcCCCcEEEEEecCCCHHHHHHHHHH
Confidence 3456899999999999999999999999 599999987642110000 01112345667799999998877654
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 79 ~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------- 148 (296)
T PRK05872 79 AVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA---------- 148 (296)
T ss_pred HHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC----------
Confidence 4799999999432 22345678999999999999988643 235899999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|+..|.+.+.++. ..|+.++++.|+.+..+....... ..........+ ....
T Consensus 149 -----~~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~-------~p~~ 216 (296)
T PRK05872 149 -----AAPGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLP-------WPLR 216 (296)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCC-------Cccc
Confidence 112346899999999999887753 258999999999887653221110 11111111110 0123
Q ss_pred cccchhHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~ 239 (467)
.++.++|+|++++.++.
T Consensus 217 ~~~~~~~va~~i~~~~~ 233 (296)
T PRK05872 217 RTTSVEKCAAAFVDGIE 233 (296)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 45679999999999886
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=140.74 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=143.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||++.||+++++.|+++| +.|+++.|..........+ .+.. ....++.++.+|++|++++.++++
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSG-VNIAFTYNSNVEEANKIAE--DLEQ-KYGIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHH--HHHH-hcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5888876543211000000 0000 112467899999999998877764
Q ss_pred -----CCCEEEEcccCCC-------------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCC
Q 012270 84 -----GASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSH 141 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~ 141 (467)
++|++||+|+... ...+....+++|+.+...+.+++. +.+-.++|++||.....
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 157 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV---- 157 (260)
T ss_pred HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc----
Confidence 4799999997321 112345577888887666555544 33456899999975321
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEec
Q 012270 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 142 ~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g 216 (467)
+......|+.+|+..+.+++.++.+ +|+++..+.||.+-.+....+. ...........
T Consensus 158 -----------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~------ 220 (260)
T PRK08416 158 -----------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELS------ 220 (260)
T ss_pred -----------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcC------
Confidence 1122357999999999999888765 4899999999887443211100 11111111111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|.+++.++... .....|+.+.+.++
T Consensus 221 ---~~~r~~~p~~va~~~~~l~~~~---~~~~~G~~i~vdgg 256 (260)
T PRK08416 221 ---PLNRMGQPEDLAGACLFLCSEK---ASWLTGQTIVVDGG 256 (260)
T ss_pred ---CCCCCCCHHHHHHHHHHHcChh---hhcccCcEEEEcCC
Confidence 1123667999999999987521 23457888877765
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=139.43 Aligned_cols=232 Identities=11% Similarity=0.012 Sum_probs=148.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
|++.++|||| |+||+++++.|. +| ++|++++|+........+. +.. ...++..+.+|++|.+++.++++
T Consensus 1 ~~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 1 MKEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNEENLEAAAKT---LRE--AGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CCCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHH---HHh--cCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 3568899998 799999999996 79 5999999875311000000 110 12357889999999999887764
Q ss_pred ---CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCC------CCCCCCCCC---
Q 012270 84 ---GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGS------HDIHNGDET--- 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~------~~~~~~~E~--- 149 (467)
++|+|||+||......+++.++++|+.++.++++++... .-.+.|++||.+...... ......+..
T Consensus 73 ~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (275)
T PRK06940 73 TLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELL 152 (275)
T ss_pred hcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccc
Confidence 489999999965555678899999999999999988754 113567777765432110 000000000
Q ss_pred -ccc--C---CCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH----HHHHHHhcCCCceEEec
Q 012270 150 -LTC--C---WKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV----PLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 150 -~p~--~---~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~----~~~~~~~~~g~~~~~~g 216 (467)
.++ + ..+...|+.||+..+.+.+.++. ..|+++..+.||.+-.+.....+ ......+....
T Consensus 153 ~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------ 226 (275)
T PRK06940 153 SLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS------ 226 (275)
T ss_pred ccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC------
Confidence 000 0 02346899999999988876543 25899999999998766321111 01111111111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+...+|+|.+++.++.. ......|+.+.+.++
T Consensus 227 ---p~~r~~~peeia~~~~fL~s~---~~~~itG~~i~vdgg 262 (275)
T PRK06940 227 ---PAGRPGTPDEIAALAEFLMGP---RGSFITGSDFLVDGG 262 (275)
T ss_pred ---CcccCCCHHHHHHHHHHHcCc---ccCcccCceEEEcCC
Confidence 112367789999999987741 023457888888775
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=138.71 Aligned_cols=204 Identities=18% Similarity=0.092 Sum_probs=137.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||+|+||+++++.|+++| ++|++++|+................. ....++..+.+|++|++++.++++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDG-ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 46799999999999999999999999 59999998764211000000000000 012457889999999999887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+|+... ..++++..+++|+.++.++++++... +-.++|++||.... .
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~--~------- 154 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL--D------- 154 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc--c-------
Confidence 5899999999421 12335678899999999999998743 23478899885321 0
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
.. ...+...|+.+|+..|.+++.++.+ ++++++.+.|+.+. +... .+....+. .....
T Consensus 155 -~~---~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i---~t~~----~~~~~~~~--------~~~~~ 215 (273)
T PRK08278 155 -PK---WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTI---ATAA----VRNLLGGD--------EAMRR 215 (273)
T ss_pred -cc---ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCcc---ccHH----HHhccccc--------ccccc
Confidence 00 0134578999999999999987644 47999999998432 1111 11111111 11224
Q ss_pred ccchhHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAE 239 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~ 239 (467)
+..++|+|.+++.++.
T Consensus 216 ~~~p~~va~~~~~l~~ 231 (273)
T PRK08278 216 SRTPEIMADAAYEILS 231 (273)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 5678999999999886
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=129.72 Aligned_cols=199 Identities=17% Similarity=0.123 Sum_probs=142.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
..|.++|||||+-||.++++.|.+.| ++|.+..|+...-.. +...+....+..+..|++|.++++++++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G-~~vvl~aRR~drL~~-------la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAG-AKVVLAARREERLEA-------LADEIGAGAALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCC-CeEEEEeccHHHHHH-------HHHhhccCceEEEeeccCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 599999997752111 1222222457889999999988665553
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||.||... ..++|..++++|+.|..+..++.. +.+-.++|.+||.+--
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~------------ 144 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR------------ 144 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc------------
Confidence 4899999999322 346688999999999888877754 4455699999998632
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HH---HHHHHhcCCCceEEecCCCcc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VP---LLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~---~~~~~~~~g~~~~~~g~g~~~ 221 (467)
++....+.|+.+|+..-++.+....+ .+++++.+-||.+-...-... .. ....... ..
T Consensus 145 ---~~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y------------~~ 209 (246)
T COG4221 145 ---YPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY------------KG 209 (246)
T ss_pred ---ccCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHh------------cc
Confidence 02244578999999988877665433 579999999988843311100 00 0000000 12
Q ss_pred ccccchhHHHHHHHHHHHH
Q 012270 222 SDFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~ 240 (467)
...+..+|+|+++..+++.
T Consensus 210 ~~~l~p~dIA~~V~~~~~~ 228 (246)
T COG4221 210 GTALTPEDIAEAVLFAATQ 228 (246)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 3578899999999999984
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=141.20 Aligned_cols=216 Identities=18% Similarity=0.121 Sum_probs=143.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ..|++.++..........+ .+.. ...++..+.+|+.|.+++.++++
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~G-a~Vv~~~~~~~~~~~~~~~--~i~~--~g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLG-ATVVVNDVASALDASDVLD--EIRA--AGAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCchhHHHHHHH--HHHh--cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5899988754211000000 0000 12467889999999988877664
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--------C---CCeEEEEcCccccccCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--------K---VRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--------~---v~r~v~~SS~~vyg~~~~~ 142 (467)
++|+|||+||... ...++...+++|+.++.++++++... + -.++|++||.+.+.
T Consensus 86 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 160 (306)
T PRK07792 86 GLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV----- 160 (306)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc-----
Confidence 4899999999432 22456778999999999999887531 1 24899999976541
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+++.++. .+|+++..+.|+. . ..+..... ...+ ... .
T Consensus 161 ----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~---t~~~~~~~----~~~~-~~~---~ 217 (306)
T PRK07792 161 ----------GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--R---TAMTADVF----GDAP-DVE---A 217 (306)
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--C---Cchhhhhc----cccc-hhh---h
Confidence 112345799999999999887664 3689999999962 1 11111111 0000 000 0
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+.+.++|+|.++..++... .....|+.|.+.++
T Consensus 218 ~~~~~~~pe~va~~v~~L~s~~---~~~~tG~~~~v~gg 253 (306)
T PRK07792 218 GGIDPLSPEHVVPLVQFLASPA---AAEVNGQVFIVYGP 253 (306)
T ss_pred hccCCCCHHHHHHHHHHHcCcc---ccCCCCCEEEEcCC
Confidence 1124467999999988776411 12467788888764
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-15 Score=144.05 Aligned_cols=181 Identities=10% Similarity=0.035 Sum_probs=128.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|.||.+++++|+++| ++|++++|+........+. +.......++.++.+|+.|.+++.++++
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~---l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAA---IRTAVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976421100000 1111112368889999999999887754
Q ss_pred -----CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHHh---CCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~~---~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... ..++++..+++|+.++..+.+.+.. .+..|+|++||...+... .......+.
T Consensus 88 ~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~-~~~~~~~~~ 166 (313)
T PRK05854 88 RAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGA-INWDDLNWE 166 (313)
T ss_pred HHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCC-cCccccccc
Confidence 3799999999432 2355678899999998887777653 234589999998654321 111122222
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccC
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGP 193 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~-----~~g~~~~ilRp~~i~G~ 193 (467)
. +..+...|+.||...+.+.+.++. ..|+.+..+.||.+-.+
T Consensus 167 ~--~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 167 R--SYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred c--cCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 2 234567899999999999888753 25799999999998654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=135.41 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=133.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC--HHHHHHHH--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVL-- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~-- 82 (467)
.+++++||||+|+||+++++.|+++| ++|++++|++.......+. +.. .....+..+.+|+.| .+++.+++
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDA---IVE-AGHPEPFAIRFDLMSAEEKEFEQFAAT 79 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHH---HHH-cCCCCcceEEeeecccchHHHHHHHHH
Confidence 46899999999999999999999999 5999999976421000000 000 012345678899875 33443332
Q ss_pred ------hCCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCC
Q 012270 83 ------EGASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 83 ------~~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
.++|+|||+|+... ...++...+++|+.++.++++++.. .+..++|++||.... .
T Consensus 80 i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~--~----- 152 (239)
T PRK08703 80 IAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE--T----- 152 (239)
T ss_pred HHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc--c-----
Confidence 35799999999421 1133456789999999999888754 345699999986432 0
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC----CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCc
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNID----GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~----g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+......|+.+|+..|.+++.++.+. ++++++++||.+.+|...... .+. .
T Consensus 153 --------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~--------~~~---------~ 207 (239)
T PRK08703 153 --------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH--------PGE---------A 207 (239)
T ss_pred --------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC--------CCC---------C
Confidence 12234679999999999988876542 599999999999988532210 111 1
Q ss_pred cccccchhHHHHHHHHHHH
Q 012270 221 MSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~ 239 (467)
...+...+|++.++..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~ 226 (239)
T PRK08703 208 KSERKSYGDVLPAFVWWAS 226 (239)
T ss_pred ccccCCHHHHHHHHHHHhC
Confidence 1234578999999998875
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-15 Score=137.34 Aligned_cols=214 Identities=15% Similarity=0.069 Sum_probs=143.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-------
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE------- 83 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~------- 83 (467)
|+||||+|+||.++++.|.++| ++|.+++|........... .+. ....++.++.+|+.|.+++.++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~--~l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 75 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG-FEICVHYHSGRSDAESVVS--AIQ--AQGGNARLLQFDVADRVACRTLLEADIAEHG 75 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHH--HcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999 5898888754311000000 000 012468889999999998877654
Q ss_pred CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH-----hCCCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~-----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
..|++||+++... ...++..++++|+.++.++++++. +.+..++|++||.+.+.
T Consensus 76 ~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~-------------- 141 (239)
T TIGR01831 76 AYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVM-------------- 141 (239)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhcc--------------
Confidence 3699999998421 234567789999999999988763 23456899999975542
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
+......|+.+|+..+.+.+.++.+ .|++++.++|+.+.++......+. .....+..+ ...+...+
T Consensus 142 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~---------~~~~~~~~ 210 (239)
T TIGR01831 142 -GNRGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEHD-LDEALKTVP---------MNRMGQPA 210 (239)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhHH-HHHHHhcCC---------CCCCCCHH
Confidence 1123457999999888877766533 589999999999977754322121 111111111 12355689
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
|+|++++.++... ..-..|....+.+
T Consensus 211 ~va~~~~~l~~~~---~~~~~g~~~~~~g 236 (239)
T TIGR01831 211 EVASLAGFLMSDG---ASYVTRQVISVNG 236 (239)
T ss_pred HHHHHHHHHcCch---hcCccCCEEEecC
Confidence 9999999987521 1234455555544
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=136.88 Aligned_cols=221 Identities=13% Similarity=0.105 Sum_probs=145.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|.||+++++.|+++| +.|++..|+.......... .+.. ...++..+.+|++|.+++.++++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G-~~vvi~~~~~~~~~~~~~~--~l~~--~~~~~~~~~~Dl~~~~~i~~~~~~~ 79 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK-AKVVINYRSDEEEANDVAE--EIKK--AGGEAIAVKGDVTVESDVVNLIQTA 79 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHHH--cCCeEEEEEecCCCHHHHHHHHHHH
Confidence 467899999999999999999999999 5888877754211000000 0000 12357788999999998877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHH----HHHhCC-CCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECK-VRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~----aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+|+... ...+++..+++|+.++.++++ .+++.+ -.++|++||...+.
T Consensus 80 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~--------- 150 (261)
T PRK08936 80 VKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI--------- 150 (261)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC---------
Confidence 4799999999432 113355678999888766554 445544 35899999964431
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|++.+.+.+.++.+ .|+++++++|+.+..+...... +.......... ..
T Consensus 151 ------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 215 (261)
T PRK08936 151 ------PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMI---------PM 215 (261)
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcC---------CC
Confidence 2234568999998877776665432 5899999999999877532211 11111111111 12
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+...+|+|+++..++... .....|..+.+.++
T Consensus 216 ~~~~~~~~va~~~~~l~s~~---~~~~~G~~i~~d~g 249 (261)
T PRK08936 216 GYIGKPEEIAAVAAWLASSE---ASYVTGITLFADGG 249 (261)
T ss_pred CCCcCHHHHHHHHHHHcCcc---cCCccCcEEEECCC
Confidence 34667899999999877521 23456777777665
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=137.33 Aligned_cols=196 Identities=12% Similarity=0.055 Sum_probs=134.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCC--CHHHHHHHH--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR--DISQIKKVL-- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~l~~~~-- 82 (467)
++++++||||+|+||.+++++|+++| ++|++++|+........+. +.. ....++.++.+|++ +.+++.+++
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDE---IEA-AGGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHH---HHh-cCCCCceEEEecccCCCHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976421100000 111 11235667778886 555544433
Q ss_pred -----hCCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCC
Q 012270 83 -----EGASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 83 -----~~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
.++|+|||+|+... ..++++..+++|+.++.++++++. +.+.+++|++||.....
T Consensus 86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~-------- 157 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ-------- 157 (247)
T ss_pred HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC--------
Confidence 35899999998421 123456789999999888888774 45678999999975431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|+..|.+++.++.+ .++++++++|+.+-++.... ..... ...
T Consensus 158 -------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~--------~~~~~---------~~~ 213 (247)
T PRK08945 158 -------GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRAS--------AFPGE---------DPQ 213 (247)
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhh--------hcCcc---------ccc
Confidence 1123457999999999988876543 47899999999886542111 00000 112
Q ss_pred cccchhHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~ 239 (467)
.+...+|++..+..++.
T Consensus 214 ~~~~~~~~~~~~~~~~~ 230 (247)
T PRK08945 214 KLKTPEDIMPLYLYLMG 230 (247)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 35678999999999875
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=133.84 Aligned_cols=182 Identities=11% Similarity=0.043 Sum_probs=124.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++++++||||+|+||++++++|+++| ++|++++|+..... + ... ......+.+|++|.+++.+.+.++
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~r~~~~~~---~------~~~-~~~~~~~~~D~~~~~~~~~~~~~i 80 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKG-AKVIGLTHSKINNS---E------SND-ESPNEWIKWECGKEESLDKQLASL 80 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEECCchhhh---h------hhc-cCCCeEEEeeCCCHHHHHHhcCCC
Confidence 356899999999999999999999999 59999998752110 0 001 112256789999999999888899
Q ss_pred CEEEEcccCC----CCCCChhhHHHhhHHHHHHHHHHHHhC-------CCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 86 STVFYVDATD----LNTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 86 D~Vih~aa~~----~~~~~~~~~~~~nv~g~~~ll~aa~~~-------~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
|++||+||.. .+.+++...+++|+.++.++++++... +-..++..||.+.. . +
T Consensus 81 DilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~--~-------------~- 144 (245)
T PRK12367 81 DVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEI--Q-------------P- 144 (245)
T ss_pred CEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEeccccc--C-------------C-
Confidence 9999999842 123456789999999999999987653 11224344443221 0 1
Q ss_pred CCCChHHHHHHHHHHHH---Hhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 155 KFQDLMCDLKAQAEALV---LFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v---~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
.....|+.||+..+.+. ++.. ...++.+..+.|+.+-. .+. + ...+.++
T Consensus 145 ~~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t----~~~-----------~----------~~~~~~~ 199 (245)
T PRK12367 145 ALSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRS----ELN-----------P----------IGIMSAD 199 (245)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCccc----ccC-----------c----------cCCCCHH
Confidence 12357999999875432 2221 23578888888765422 110 0 1246789
Q ss_pred HHHHHHHHHHH
Q 012270 229 NVAHAHVCAAE 239 (467)
Q Consensus 229 Dva~a~~~al~ 239 (467)
|+|+.++.+++
T Consensus 200 ~vA~~i~~~~~ 210 (245)
T PRK12367 200 FVAKQILDQAN 210 (245)
T ss_pred HHHHHHHHHHh
Confidence 99999999987
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=134.42 Aligned_cols=196 Identities=12% Similarity=0.079 Sum_probs=141.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----C
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----G 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~ 84 (467)
|+++||||+|.||+++++.|.++| ++|++++|+.... .......+++.+.+|++|++++.++++ +
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g-~~v~~~~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG-HKVTLVGARRDDL----------EVAAKELDVDAIVCDNTDPASLEEARGLFPHH 69 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HHHHHhccCcEEecCCCCHHHHHHHHHHHhhc
Confidence 479999999999999999999999 5999999875411 000011246788999999999888775 4
Q ss_pred CCEEEEcccCCC------------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 85 ASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 85 ~D~Vih~aa~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
+|++||+|+... ..++++..+++|+.++.++++++... .-.++|++||...
T Consensus 70 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~--------------- 134 (223)
T PRK05884 70 LDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP--------------- 134 (223)
T ss_pred CcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC---------------
Confidence 899999987311 12346788999999999999988653 2258999998631
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
.+...|+.+|+..+.+.+.++.+ +|++++.+.||.+-.+. ...... . +.-.+
T Consensus 135 ----~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~--------~~~~~~-~------------p~~~~ 189 (223)
T PRK05884 135 ----PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPG--------YDGLSR-T------------PPPVA 189 (223)
T ss_pred ----CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchh--------hhhccC-C------------CCCCH
Confidence 12357999999999998877653 57999999999885431 011100 0 11268
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+|+|.++..++.. ......|+.+.+.++
T Consensus 190 ~~ia~~~~~l~s~---~~~~v~G~~i~vdgg 217 (223)
T PRK05884 190 AEIARLALFLTTP---AARHITGQTLHVSHG 217 (223)
T ss_pred HHHHHHHHHHcCc---hhhccCCcEEEeCCC
Confidence 9999999887641 123567788877665
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-15 Score=136.26 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=120.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
|++++||||+|+||++++++|+++| ++|++++|++.... . + ....++....+|++|++++.++++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~----~---~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDT----A---L---QALPGVHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCCCcchH----H---H---HhccccceEEcCCCCHHHHHHHHHHhhc
Confidence 4789999999999999999999999 59999999865210 0 1 112357788899999998877765
Q ss_pred -CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 -GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 -~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+|+... ...+....+++|+.++.++++++... +..+++++||. +|.... .
T Consensus 70 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~--~g~~~~-----~--- 139 (225)
T PRK08177 70 QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ--LGSVEL-----P--- 139 (225)
T ss_pred CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC--cccccc-----C---
Confidence 4899999998431 12334567889999999998887643 33578888875 321110 0
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccC
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGP 193 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~ 193 (467)
+..+...|+.+|+..|.+++.++.+ .++++..++||.+-.+
T Consensus 140 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 140 --DGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 1123457999999999999887543 5799999999988544
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=153.00 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=152.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|.||.++++.|+++| ++|++++|+...... +.+.. ..++..+.+|++|++++.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 338 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRDAEGAKK-------LAEAL-GDEHLSVQADITDEAAVESAFAQIQ 338 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCceeEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599999987541100 01101 2346678999999999887764
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
.+|++||+||... ...+++.++++|+.++.++.+++... +-.++|++||.+.+.
T Consensus 339 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 406 (520)
T PRK06484 339 ARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ 406 (520)
T ss_pred HHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------
Confidence 3799999999431 12345778999999999999988764 335899999986642
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEecCCCcccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~---~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+++.++.+ .|++++++.||.+..+...... ........+..+ ...
T Consensus 407 ---~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~~ 474 (520)
T PRK06484 407 ---ALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP---------LGR 474 (520)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC---------CCC
Confidence 1124568999999999998887643 4799999999999776432111 011111111111 123
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+..++|+|++++.++... .....|+.+.+.++
T Consensus 475 ~~~~~dia~~~~~l~s~~---~~~~~G~~i~vdgg 506 (520)
T PRK06484 475 LGDPEEVAEAIAFLASPA---ASYVNGATLTVDGG 506 (520)
T ss_pred CcCHHHHHHHHHHHhCcc---ccCccCcEEEECCC
Confidence 567899999999887521 23467888888775
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=137.52 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=135.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
|+++||||+|.||+++++.|+++| +.|++++|+........+. +.. .......++.+|+.|++++.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G-~~vv~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG-AELFLTDRDADGLAQTVAD---ARA-LGGTVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-cCCCcceEEEeeCCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999 5899999865411000000 000 011224557899999988776654
Q ss_pred --CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----C-CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~-~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||++|... +.++++..+++|+.++.++++++.. . ...++|++||...+.
T Consensus 76 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------ 143 (272)
T PRK07832 76 HGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV------------ 143 (272)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC------------
Confidence 3799999998432 2234567899999999999998753 2 235899999975431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcH-------HHHHHHhcCCCceEEecCCC
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLV-------PLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~-------~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|...+.+.+..+ ...++++++++||.+.++...... ......... .
T Consensus 144 ---~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----------~ 210 (272)
T PRK07832 144 ---ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVD----------R 210 (272)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHH----------h
Confidence 11234579999997777766554 236899999999999877532210 000000000 0
Q ss_pred ccccccchhHHHHHHHHHHH
Q 012270 220 NMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~ 239 (467)
.....+..+|+|++++.+++
T Consensus 211 ~~~~~~~~~~vA~~~~~~~~ 230 (272)
T PRK07832 211 FRGHAVTPEKAAEKILAGVE 230 (272)
T ss_pred cccCCCCHHHHHHHHHHHHh
Confidence 01235789999999999986
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=136.40 Aligned_cols=220 Identities=11% Similarity=0.017 Sum_probs=140.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHH----HHHH--
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI----KKVL-- 82 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l----~~~~-- 82 (467)
+.++||||+|+||++++++|+++| ++|++++|..........+ .+.. ....++..+.+|++|.+++ .+++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~--~l~~-~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~ 77 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG-YRVVLHYHRSAAAASTLAA--ELNA-RRPNSAVTCQADLSNSATLFSRCEAIIDA 77 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC-CeEEEEcCCcHHHHHHHHH--HHHh-ccCCceEEEEccCCCchhhHHHHHHHHHH
Confidence 479999999999999999999999 5898876543211100000 0000 0123466789999998754 2332
Q ss_pred -----hCCCEEEEcccCCC-------CCC-----------ChhhHHHhhHHHHHHHHHHHHhCC----------CCeEEE
Q 012270 83 -----EGASTVFYVDATDL-------NTD-----------DFYNCYMIIVQGAKNVVTACRECK----------VRRLVY 129 (467)
Q Consensus 83 -----~~~D~Vih~aa~~~-------~~~-----------~~~~~~~~nv~g~~~ll~aa~~~~----------v~r~v~ 129 (467)
.++|+|||+||... ... +....+++|+.++..+.+++.... ..++|+
T Consensus 78 ~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~ 157 (267)
T TIGR02685 78 CFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVN 157 (267)
T ss_pred HHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEE
Confidence 25899999998321 111 245679999999999988765331 135777
Q ss_pred EcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHh
Q 012270 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLA 206 (467)
Q Consensus 130 ~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~ 206 (467)
+||.... . +..+...|+.+|+..|.+++.++.+ .|+++++++||.+..|.... .......
T Consensus 158 ~~s~~~~--~-------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~--~~~~~~~ 220 (267)
T TIGR02685 158 LCDAMTD--Q-------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP--FEVQEDY 220 (267)
T ss_pred ehhhhcc--C-------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc--hhHHHHH
Confidence 7765331 0 2234568999999999999887654 68999999999987663321 1111111
Q ss_pred cCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 207 KPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 207 ~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
....+ . + ..+..++|+|.+++.++... .....|+.+.+.++..
T Consensus 221 ~~~~~---~--~---~~~~~~~~va~~~~~l~~~~---~~~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 221 RRKVP---L--G---QREASAEQIADVVIFLVSPK---AKYITGTCIKVDGGLS 263 (267)
T ss_pred HHhCC---C--C---cCCCCHHHHHHHHHHHhCcc---cCCcccceEEECCcee
Confidence 11111 0 0 12457899999999987521 2345788888877643
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=137.22 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=142.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
|+++||||+|.||++++++|+++| +.|++++|++....... .+.....++..+.+|++|++++.++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~------~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEKAL------KELKEYGEVYAVKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHH------HHHHhcCCceEEEcCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999 59999998764210000 000112357789999999998887764
Q ss_pred --CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHH----HH-hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 --GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTA----CR-ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 --~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~a----a~-~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ...++...+++|+.++..+..+ .. +.+-.++|++||...+.
T Consensus 74 ~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~---------- 143 (259)
T PRK08340 74 LGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE---------- 143 (259)
T ss_pred cCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC----------
Confidence 4899999999421 1122344567787765554433 32 23456899999986641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCC-Cc--e-EEecCCCc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG-WT--K-FIIGSGEN 220 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g-~~--~-~~~g~g~~ 220 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..+.||.+-.+..+..+.......... .. . ... ....
T Consensus 144 -----~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p 217 (259)
T PRK08340 144 -----PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVL-ERTP 217 (259)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHh-ccCC
Confidence 1223468999999999998887653 47999999999886553211111000000000 00 0 000 0011
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+..++|+|++++.++... .....|++..+.++.
T Consensus 218 ~~r~~~p~dva~~~~fL~s~~---~~~itG~~i~vdgg~ 253 (259)
T PRK08340 218 LKRTGRWEELGSLIAFLLSEN---AEYMLGSTIVFDGAM 253 (259)
T ss_pred ccCCCCHHHHHHHHHHHcCcc---cccccCceEeecCCc
Confidence 234667899999999887521 234567777777653
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=137.88 Aligned_cols=218 Identities=15% Similarity=0.058 Sum_probs=147.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+.... ++ +... ...++..+.+|+.|.+++.++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~----~~---l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEG-ARVAVLDKSAAGL----QE---LEAA-HGDAVVGVEGDVRSLDDHKEAVARCV 74 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHH----HH---HHhh-cCCceEEEEeccCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999865311 00 1110 12357889999999988776654
Q ss_pred ----CCCEEEEcccCCC---C----C-----CChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCC
Q 012270 84 ----GASTVFYVDATDL---N----T-----DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ----~~D~Vih~aa~~~---~----~-----~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... . . .+++..+++|+.++.++++++... .-.++|++||...+.
T Consensus 75 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------- 147 (262)
T TIGR03325 75 AAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------- 147 (262)
T ss_pred HHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec-------
Confidence 4799999998421 0 1 135678999999999999998753 124788988875541
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc-H---HH----H-HHHhcCCCceE
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-V---PL----L-VNLAKPGWTKF 213 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~-~---~~----~-~~~~~~g~~~~ 213 (467)
+......|+.+|...+.+++.++.+. ++++..+.||.+..+..... . .. . ........
T Consensus 148 --------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (262)
T TIGR03325 148 --------PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSV--- 216 (262)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhc---
Confidence 11234579999999999998887653 38999999999876532110 0 00 0 00000000
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.....+...+|+|.+++.++... ......|+++.+.++
T Consensus 217 -----~p~~r~~~p~eva~~~~~l~s~~--~~~~~tG~~i~vdgg 254 (262)
T TIGR03325 217 -----LPIGRMPDAEEYTGAYVFFATRG--DTVPATGAVLNYDGG 254 (262)
T ss_pred -----CCCCCCCChHHhhhheeeeecCC--CcccccceEEEecCC
Confidence 11234667899999988876510 011246778877765
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=131.50 Aligned_cols=217 Identities=15% Similarity=0.063 Sum_probs=148.6
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.++|+++||||+ +-||+.++++|+++| ++|++.+|+.... +. ..+ ....++..+.+|++|+++++++++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G-~~Vi~~~r~~~~~----~~---~~~-~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQG-ATVIYTYQNDRMK----KS---LQK-LVDEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEecCchHHH----HH---HHh-hccCceeEEeCCCCCHHHHHHHHH
Confidence 457899999999 799999999999999 5999998863210 00 111 112357889999999998876653
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+||... ..++++..+++|+.++..+.+++... .-.++|++||.+.. .
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~--~---- 149 (252)
T PRK06079 76 TIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE--R---- 149 (252)
T ss_pred HHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc--c----
Confidence 4799999998421 12345678999999999988887654 22589999986532 0
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..+.+.+.++.+ .|+++..+.||.+-.+..... -+.......+..+
T Consensus 150 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 213 (252)
T PRK06079 150 ---------AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTV------- 213 (252)
T ss_pred ---------cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCc-------
Confidence 1123457999999999998887643 589999999999966532111 1122222211111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+..++|+|.++..++... .....|++..+.++
T Consensus 214 --~~r~~~pedva~~~~~l~s~~---~~~itG~~i~vdgg 248 (252)
T PRK06079 214 --DGVGVTIEEVGNTAAFLLSDL---STGVTGDIIYVDKG 248 (252)
T ss_pred --ccCCCCHHHHHHHHHHHhCcc---cccccccEEEeCCc
Confidence 123667899999999887521 23456777777665
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-13 Score=126.72 Aligned_cols=204 Identities=14% Similarity=0.068 Sum_probs=137.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---C
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---G 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~ 84 (467)
|+++||||+|+||++++++|+++|+ ..|...+|.... . ...+++.++++|++|.+++.++.+ +
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~------------~-~~~~~~~~~~~Dls~~~~~~~~~~~~~~ 67 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP------------D-FQHDNVQWHALDVTDEAEIKQLSEQFTQ 67 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc------------c-cccCceEEEEecCCCHHHHHHHHHhcCC
Confidence 5899999999999999999999863 356666664421 0 123467889999999988776544 6
Q ss_pred CCEEEEcccCCCC----------C---CChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 85 ASTVFYVDATDLN----------T---DDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 85 ~D~Vih~aa~~~~----------~---~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+|+|||+||.... . +.+...+++|+.++..+.+++... +..+++++||.. +.. .
T Consensus 68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~-------~ 138 (235)
T PRK09009 68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSI-------S 138 (235)
T ss_pred CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccc-------c
Confidence 8999999994321 0 123467889999988877776543 346899998742 100 1
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+. +..+...|+.+|+..+.+.+.++.+ .++++..+.||.+-.+..... .... ...
T Consensus 139 ~~---~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~--------~~~~---------~~~ 198 (235)
T PRK09009 139 DN---RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF--------QQNV---------PKG 198 (235)
T ss_pred cC---CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch--------hhcc---------ccC
Confidence 00 1123458999999999998887632 478999999998866543210 0111 112
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
.++..+|+|++++.++..- .+...|..+.+.+
T Consensus 199 ~~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~~g 230 (235)
T PRK09009 199 KLFTPEYVAQCLLGIIANA---TPAQSGSFLAYDG 230 (235)
T ss_pred CCCCHHHHHHHHHHHHHcC---ChhhCCcEEeeCC
Confidence 3578999999999988721 1234566555444
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-14 Score=152.78 Aligned_cols=195 Identities=15% Similarity=0.119 Sum_probs=142.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+|+++||||+|+||+++++.|+++| ++|++++|++.......+. +. ....++..+.+|+.|.+++.++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~ 442 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG-ATVFLVARNGEALDELVAE---IR--AKGGTAHAYTCDLTDSAAVDHTVKDI 442 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 5999999976421000000 00 012468889999999999887776
Q ss_pred -----CCCEEEEcccCCC------C---CCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDATDL------N---TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~~~------~---~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... . .++++..+++|+.++.++.+++ ++.+..++|++||.+.|+.
T Consensus 443 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------- 515 (657)
T PRK07201 443 LAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN------- 515 (657)
T ss_pred HHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC-------
Confidence 5899999999421 1 1346678999999998887765 4456779999999987731
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
......|+.+|+..+.+.+.++.+ .|+++++++||.+..+..... . .. ...
T Consensus 516 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~-----------~---~~----~~~ 569 (657)
T PRK07201 516 --------APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT-----------K---RY----NNV 569 (657)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc-----------c---cc----cCC
Confidence 123467999999999998887543 589999999999976642210 0 00 012
Q ss_pred cccchhHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~ 239 (467)
..+.++++|+.++.++.
T Consensus 570 ~~~~~~~~a~~i~~~~~ 586 (657)
T PRK07201 570 PTISPEEAADMVVRAIV 586 (657)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 35679999999999876
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-14 Score=130.56 Aligned_cols=202 Identities=13% Similarity=0.074 Sum_probs=140.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
+.++++++|||||+-||..+++.|.++| +.|+++.|+..+-....++ +.+. ..-.++++.+|++|++++..+.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~---l~~~-~~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKE---LEDK-TGVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHH---HHHh-hCceEEEEECcCCChhHHHHHHHH
Confidence 3467899999999999999999999999 5999999987632111111 1110 12357889999999999887764
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
.+|++||+||... +..+.+.++++|+.++..+-.+. .+.+-.++|.++|.+.|-
T Consensus 78 l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~--------- 148 (265)
T COG0300 78 LKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI--------- 148 (265)
T ss_pred HHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC---------
Confidence 4899999999322 34456789999999877665554 455667999999998761
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
|......|+.||+..-.+.+... ...|+.++.+-||.+.-+.. . ..+...... ....-
T Consensus 149 ------p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~----~------~~~~~~~~~---~~~~~ 209 (265)
T COG0300 149 ------PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF----D------AKGSDVYLL---SPGEL 209 (265)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc----c------ccccccccc---cchhh
Confidence 22335689999997655444332 34789999999977754321 1 011110000 11246
Q ss_pred ccchhHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAE 239 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~ 239 (467)
++..+|+|+..+.+++
T Consensus 210 ~~~~~~va~~~~~~l~ 225 (265)
T COG0300 210 VLSPEDVAEAALKALE 225 (265)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 7789999999999997
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=131.87 Aligned_cols=226 Identities=11% Similarity=-0.006 Sum_probs=148.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|.||+++++.|+++| ++|.+++|++.......+. +.. ....++..+.+|++|++++.++++
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG-CHLHLVARDADALEALAAD---LRA-AHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHh-hcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 46899999999999999999999999 4999999876421100000 000 012457889999999999887765
Q ss_pred CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++|++||+++... ..++++..+++|+.++.++.+++. +.+-.++|++||.... .
T Consensus 81 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~--~------------- 145 (259)
T PRK06125 81 DIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE--N------------- 145 (259)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc--C-------------
Confidence 4899999998421 223456789999999998888764 3334589999986432 0
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcC---CCc--eEEecCCCccccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP---GWT--KFIIGSGENMSDF 224 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~---g~~--~~~~g~g~~~~~~ 224 (467)
+......|+.+|...+.+++.++. ..|++++.+.||.+-.+.. ..+...... +.+ ....-.......+
T Consensus 146 ~~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (259)
T PRK06125 146 PDADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRM----LTLLKGRARAELGDESRWQELLAGLPLGRP 221 (259)
T ss_pred CCCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHH----HHHHHhhhhcccCCHHHHHHHhccCCcCCC
Confidence 112345789999999988887653 3589999999988865521 111110000 000 0000000112246
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..++|+|.+++.++.. ......|..+.+.++.
T Consensus 222 ~~~~~va~~~~~l~~~---~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 222 ATPEEVADLVAFLASP---RSGYTSGTVVTVDGGI 253 (259)
T ss_pred cCHHHHHHHHHHHcCc---hhccccCceEEecCCe
Confidence 6899999999888751 1234678888887763
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-14 Score=123.90 Aligned_cols=165 Identities=18% Similarity=0.094 Sum_probs=120.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG---- 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 84 (467)
++++||||+|+||.+++++|.++|.+.|.++.|+.............+. ....++..+.+|+.+++++.++++.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELE--ALGAEVTVVACDVADRAALAAALAAIPAR 78 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999985468888876531110000000000 0124577889999999888877543
Q ss_pred ---CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 85 ---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 85 ---~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
+|+|||+++... ...+++..+++|+.++.++++++++.+.+++|++||..... +.
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~---------------~~ 143 (180)
T smart00822 79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL---------------GN 143 (180)
T ss_pred cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc---------------CC
Confidence 699999998422 22445678999999999999999888888999999975531 11
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcc
Q 012270 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~ 191 (467)
.....|+.+|...+.+++.... .+++++.+.|+.+-
T Consensus 144 ~~~~~y~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 144 PGQANYAAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred CCchhhHHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 2346799999999999966554 78999999987653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=131.21 Aligned_cols=223 Identities=18% Similarity=0.140 Sum_probs=145.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCC-C-CcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD-P-SESNSLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~-~-~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
.++++++||||++.||+++++.|+++| ++|++++|+.+.... . .+......+.. ...++..+.+|++|.+++.++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G-~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 356899999999999999999999999 589988876410000 0 00000000001 123577889999999888766
Q ss_pred Hh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C------CCeEEEEcCccccc
Q 012270 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K------VRRLVYNSTADVVF 137 (467)
Q Consensus 82 ~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~------v~r~v~~SS~~vyg 137 (467)
++ ++|++||+||... ..++++..+++|+.++..+.+++... + -.++|++||.+.+.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 53 4799999999422 22456789999999999988876521 1 24899999976541
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 012270 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (467)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~ 214 (467)
+......|+.+|+..+.+.+.++.+ .|+++..+.|+ +..+ +............
T Consensus 163 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~----~~~~~~~~~~~~~---- 218 (286)
T PRK07791 163 ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTR----MTETVFAEMMAKP---- 218 (286)
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCC----cchhhHHHHHhcC----
Confidence 1123468999999999988887644 58999999997 4222 1111111111110
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+.....+..++|+|.+++.++... .....|+.+.+.++.
T Consensus 219 ---~~~~~~~~~pedva~~~~~L~s~~---~~~itG~~i~vdgG~ 257 (286)
T PRK07791 219 ---EEGEFDAMAPENVSPLVVWLGSAE---SRDVTGKVFEVEGGK 257 (286)
T ss_pred ---cccccCCCCHHHHHHHHHHHhCch---hcCCCCcEEEEcCCc
Confidence 011123567999999999887411 234678888887763
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=142.15 Aligned_cols=216 Identities=14% Similarity=0.067 Sum_probs=145.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|.||..+++.|.++| ++|++++|..... . +.+.....+...+.+|++|.+++.++++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~G-a~vi~~~~~~~~~-----~---l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDG-AHVVCLDVPAAGE-----A---LAAVANRVGGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCccHH-----H---HHHHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999998853210 0 0010111234678899999998877664
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCC----CeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v----~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++..+++|+.++.++.+++..... .++|++||.+.+.
T Consensus 280 ~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~----------- 348 (450)
T PRK08261 280 ERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIA----------- 348 (450)
T ss_pred HhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC-----------
Confidence 4799999999432 2344677899999999999999987432 6899999986542
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|...+.+++.++. ..|+++..+.|+.+-.+.... ++.....+.... +......
T Consensus 349 ----g~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~~~~~~~~~~~--------~~l~~~~ 415 (450)
T PRK08261 349 ----GNRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IPFATREAGRRM--------NSLQQGG 415 (450)
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cchhHHHHHhhc--------CCcCCCC
Confidence 112346899999988777776643 258999999999874332111 111111111100 0111223
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
-.+|+|+++..++.. ......|+++.++++
T Consensus 416 ~p~dva~~~~~l~s~---~~~~itG~~i~v~g~ 445 (450)
T PRK08261 416 LPVDVAETIAWLASP---ASGGVTGNVVRVCGQ 445 (450)
T ss_pred CHHHHHHHHHHHhCh---hhcCCCCCEEEECCC
Confidence 467999999987751 123456888888774
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-13 Score=126.01 Aligned_cols=221 Identities=14% Similarity=0.057 Sum_probs=143.5
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCcc---C--CCCcCCCCCCCcC--CCCCeEEEEecCCCHH
Q 012270 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQ---L--DPSESNSLLPDSL--SSGRAEYHQVDVRDIS 76 (467)
Q Consensus 6 ~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~---~--~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~ 76 (467)
.++++++||||+| .||++++++|+++| +.|++.+|..... . ...+. ....+.. ...++..+.+|++|.+
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G-~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~D~~~~~ 81 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAG-ADIFFTYWTAYDKEMPWGVDQDEQ-IQLQEELLKNGVKVSSMELDLTQND 81 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEecccccccccccccHHHH-HHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 4678999999995 79999999999999 5888876432100 0 00000 0000001 1235778899999999
Q ss_pred HHHHHHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCcccccc
Q 012270 77 QIKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFD 138 (467)
Q Consensus 77 ~l~~~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~ 138 (467)
++.++++ ..|+|||+|+... ..++++..+++|+.++..+..++. +.+-.++|++||.....
T Consensus 82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~- 160 (256)
T PRK12859 82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG- 160 (256)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC-
Confidence 8887764 3799999998421 123456679999999888865443 33345999999976431
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEe
Q 012270 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (467)
Q Consensus 139 ~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~ 215 (467)
+..+...|+.+|+..+.+.+.++.+ .|++++.++|+.+-.+.... .....+....
T Consensus 161 --------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~---~~~~~~~~~~----- 218 (256)
T PRK12859 161 --------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE---EIKQGLLPMF----- 218 (256)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH---HHHHHHHhcC-----
Confidence 2234578999999999998887643 58999999999886553221 1111111111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+...+|+|++++.++... .....|+.+.+.++
T Consensus 219 ----~~~~~~~~~d~a~~~~~l~s~~---~~~~~G~~i~~dgg 254 (256)
T PRK12859 219 ----PFGRIGEPKDAARLIKFLASEE---AEWITGQIIHSEGG 254 (256)
T ss_pred ----CCCCCcCHHHHHHHHHHHhCcc---ccCccCcEEEeCCC
Confidence 1123456899999998876411 22456777766654
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=136.28 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=122.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|+++||||+|+||++++++|.++| ++|++++|+..... +. ... ...++..+.+|++|.+++.+.+.++|
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G-~~Vi~l~r~~~~l~---~~---~~~--~~~~v~~v~~Dvsd~~~v~~~l~~ID 247 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQG-AKVVALTSNSDKIT---LE---ING--EDLPVKTLHWQVGQEAALAELLEKVD 247 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH---HH---Hhh--cCCCeEEEEeeCCCHHHHHHHhCCCC
Confidence 56899999999999999999999999 59999998654110 00 000 11246778899999999999999999
Q ss_pred EEEEcccCCC----CCCChhhHHHhhHHHHHHHHHHHHhC----CC---C-eEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 87 TVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACREC----KV---R-RLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 87 ~Vih~aa~~~----~~~~~~~~~~~nv~g~~~ll~aa~~~----~v---~-r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
++||+||... +.++++..+++|+.++.++++++... +. + .+|.+|+... . +
T Consensus 248 iLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~---~-------------~- 310 (406)
T PRK07424 248 ILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV---N-------------P- 310 (406)
T ss_pred EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc---c-------------C-
Confidence 9999998432 22345778999999999999987542 21 2 2455544211 0 1
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHH
Q 012270 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~ 234 (467)
.....|+.||+..+.+..-.....+..+..+.| ||....+ . ....+..+|+|+.+
T Consensus 311 ~~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~----gp~~t~~-----------~----------~~~~~spe~vA~~i 365 (406)
T PRK07424 311 AFSPLYELSKRALGDLVTLRRLDAPCVVRKLIL----GPFKSNL-----------N----------PIGVMSADWVAKQI 365 (406)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCCCCceEEEEe----CCCcCCC-----------C----------cCCCCCHHHHHHHH
Confidence 123469999999988653322223444444444 4432221 0 01246789999999
Q ss_pred HHHHH
Q 012270 235 VCAAE 239 (467)
Q Consensus 235 ~~al~ 239 (467)
+.+++
T Consensus 366 l~~i~ 370 (406)
T PRK07424 366 LKLAK 370 (406)
T ss_pred HHHHH
Confidence 99987
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-13 Score=128.31 Aligned_cols=220 Identities=17% Similarity=0.104 Sum_probs=145.2
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||+ +-||++++++|+++| ++|++.+|..... ...++ +.......++..+.+|+.|++++.++++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~~~~-~~~~~---~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGERLE-KEVRE---LADTLEGQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcccch-HHHHH---HHHHcCCCceEEEecCCCCHHHHHHHHHH
Confidence 56899999997 899999999999999 5999988753210 00000 1111123467889999999999877654
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+|+... +.+.+...+++|+.++..+.+++... .-.++|++||.... .
T Consensus 81 ~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~--~----- 153 (257)
T PRK08594 81 IKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE--R----- 153 (257)
T ss_pred HHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc--c-----
Confidence 3799999998431 11224567889999988888777653 12489999997542 1
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+.+.++.+ .|+++..+.||.+-.+..... ........... .
T Consensus 154 --------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 216 (257)
T PRK08594 154 --------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEER---------A 216 (257)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhc---------C
Confidence 1122357999999999998877643 589999999998865421110 00111111110 1
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|.+++.++... .....|+.+.+.++
T Consensus 217 p~~r~~~p~~va~~~~~l~s~~---~~~~tG~~~~~dgg 252 (257)
T PRK08594 217 PLRRTTTQEEVGDTAAFLFSDL---SRGVTGENIHVDSG 252 (257)
T ss_pred CccccCCHHHHHHHHHHHcCcc---cccccceEEEECCc
Confidence 1224567899999999887511 23456777777665
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-14 Score=119.37 Aligned_cols=165 Identities=18% Similarity=0.135 Sum_probs=132.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|..+|.||||-.|+.+++++++.+.+ .|+++.|.... .......+.....|....+++...++|+
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~------------d~at~k~v~q~~vDf~Kl~~~a~~~qg~ 84 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELP------------DPATDKVVAQVEVDFSKLSQLATNEQGP 84 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCC------------CccccceeeeEEechHHHHHHHhhhcCC
Confidence 5789999999999999999999999875 88888886431 1122346778889999999999999999
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~ 165 (467)
|+.|-+-|........+..+++...-...++++|++.|+++|+.+||..+ .+...-.|-..|.
T Consensus 85 dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GA-----------------d~sSrFlY~k~KG 147 (238)
T KOG4039|consen 85 DVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGA-----------------DPSSRFLYMKMKG 147 (238)
T ss_pred ceEEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCC-----------------Ccccceeeeeccc
Confidence 99998888666555567778888888899999999999999999999854 1233457889999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHH
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLV 203 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~ 203 (467)
..|+.+.++.= -.++|+|||.+.|.+.......|.
T Consensus 148 EvE~~v~eL~F---~~~~i~RPG~ll~~R~esr~gefl 182 (238)
T KOG4039|consen 148 EVERDVIELDF---KHIIILRPGPLLGERTESRQGEFL 182 (238)
T ss_pred hhhhhhhhccc---cEEEEecCcceecccccccccchh
Confidence 99999988643 368999999999988765444443
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-14 Score=133.78 Aligned_cols=202 Identities=12% Similarity=0.077 Sum_probs=133.7
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 10 TCVVLNGRGFVGRSLVLRLLE----LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~----~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
.++||||++.||.+++++|.+ .| +.|++++|+........+. +.......++..+.+|+.|.+++.++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~ 77 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSARNDEALRQLKAE---IGAERSGLRVVRVSLDLGAEAGLEQLLKAL 77 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEEcCHHHHHHHHHH---HHhcCCCceEEEEEeccCCHHHHHHHHHHH
Confidence 589999999999999999997 68 5999999875421100000 11111123578899999999988776642
Q ss_pred ----------CCEEEEcccCCCC----------CCChhhHHHhhHHHHHHHHHHHHhC-----C-CCeEEEEcCcccccc
Q 012270 85 ----------ASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACREC-----K-VRRLVYNSTADVVFD 138 (467)
Q Consensus 85 ----------~D~Vih~aa~~~~----------~~~~~~~~~~nv~g~~~ll~aa~~~-----~-v~r~v~~SS~~vyg~ 138 (467)
.|+|||+||.... .++.+..+++|+.++..+.+++... + -.++|++||...+.
T Consensus 78 ~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~- 156 (256)
T TIGR01500 78 RELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ- 156 (256)
T ss_pred HhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC-
Confidence 2589999984210 1234678999999988887766543 2 25899999986541
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----HHHHHhcCCC
Q 012270 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----LLVNLAKPGW 210 (467)
Q Consensus 139 ~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-----~~~~~~~~g~ 210 (467)
+......|+.+|+..+.+.+.++.+ .|++++.+.||.+-.+......+ .+...+...
T Consensus 157 --------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~- 221 (256)
T TIGR01500 157 --------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQEL- 221 (256)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHH-
Confidence 1123467999999999998876543 57999999999885442110000 000001000
Q ss_pred ceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 211 TKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 211 ~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
.....+..++|+|.+++.+++
T Consensus 222 --------~~~~~~~~p~eva~~~~~l~~ 242 (256)
T TIGR01500 222 --------KAKGKLVDPKVSAQKLLSLLE 242 (256)
T ss_pred --------HhcCCCCCHHHHHHHHHHHHh
Confidence 011236679999999999886
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-14 Score=148.56 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=123.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
..++++||||+|+||++++++|.++| ++|++++|+.......... +. ....++..+.+|++|++++.++++
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREG-AEVVASDIDEAAAERTAEL---IR--AAGAVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5899999976421000000 00 012367889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.|+.++.+++.. .+ -.++|++||.+.|..
T Consensus 388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--------- 458 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP--------- 458 (582)
T ss_pred HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC---------
Confidence 3799999999432 2244567889999999998887543 33 258999999988731
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~ 193 (467)
..+...|+.+|+..|.+.+.++. ..|+++++++||.+-.+
T Consensus 459 ------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 ------SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 12456899999998888776542 35899999999988544
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=126.18 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=146.7
Q ss_pred CCCCCCCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l 78 (467)
|.....++|.++||||++ -||.++++.|.++| +.|++.+|+.... ...++ +.... .....+.+|++|++++
T Consensus 1 ~~~~~~~~k~~lITGas~~~GIG~a~a~~la~~G-~~v~~~~r~~~~~-~~~~~---l~~~~--g~~~~~~~Dv~~~~~v 73 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNMSISWAIAQLAKKHG-AELWFTYQSEVLE-KRVKP---LAEEI--GCNFVSELDVTNPKSI 73 (260)
T ss_pred CCCcccCCcEEEEECCCCCcchHHHHHHHHHHcC-CEEEEEeCchHHH-HHHHH---HHHhc--CCceEEEccCCCHHHH
Confidence 444445678999999997 79999999999999 5898888763200 00000 11111 1223578999999998
Q ss_pred HHHHh-------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCcccccc
Q 012270 79 KKVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFD 138 (467)
Q Consensus 79 ~~~~~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~ 138 (467)
+++++ ++|++||+|+... +.+++...+++|+.++..+++++... .-.++|++||....
T Consensus 74 ~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~-- 151 (260)
T PRK06603 74 SNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE-- 151 (260)
T ss_pred HHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc--
Confidence 87764 3899999998421 12345678999999999988876543 12489999996542
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceE
Q 012270 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKF 213 (467)
Q Consensus 139 ~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~ 213 (467)
. +......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+..... .+..........
T Consensus 152 ~-------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--- 215 (260)
T PRK06603 152 K-------------VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATA--- 215 (260)
T ss_pred c-------------CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcC---
Confidence 0 1122357999999999988877643 589999999998865421100 011111111111
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|++++.++.. ......|+.+.+.++
T Consensus 216 ------p~~r~~~pedva~~~~~L~s~---~~~~itG~~i~vdgG 251 (260)
T PRK06603 216 ------PLKRNTTQEDVGGAAVYLFSE---LSKGVTGEIHYVDCG 251 (260)
T ss_pred ------CcCCCCCHHHHHHHHHHHhCc---ccccCcceEEEeCCc
Confidence 112356789999999998851 023456777877765
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-13 Score=127.51 Aligned_cols=221 Identities=12% Similarity=0.079 Sum_probs=145.5
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||+ +-||++++++|.++| ++|.+..|+....... +....+... ..++..+.+|++|++++.++++
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G-~~v~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~ 80 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAG-AELGITYLPDEKGRFE-KKVRELTEP--LNPSLFLPCDVQDDAQIEETFET 80 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEEecCcccchHH-HHHHHHHhc--cCcceEeecCcCCHHHHHHHHHH
Confidence 56899999986 799999999999999 5888876643211000 000001111 1246678999999999887654
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... +.++++..+++|+.++..+.+++... .-.++|++||.... .
T Consensus 81 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~--~----- 153 (258)
T PRK07370 81 IKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV--R----- 153 (258)
T ss_pred HHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc--c-----
Confidence 4799999999431 12345778999999999988876643 12589999996432 1
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+.+.++.+ .|+++..+.||.+-.+..... .+......... .
T Consensus 154 --------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 216 (258)
T PRK07370 154 --------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEK---------A 216 (258)
T ss_pred --------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhc---------C
Confidence 1123457999999999998887643 579999999999865522111 01111111111 1
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+...+|+|.++..++... .....|+++.+.++
T Consensus 217 p~~r~~~~~dva~~~~fl~s~~---~~~~tG~~i~vdgg 252 (258)
T PRK07370 217 PLRRTVTQTEVGNTAAFLLSDL---ASGITGQTIYVDAG 252 (258)
T ss_pred CcCcCCCHHHHHHHHHHHhChh---hccccCcEEEECCc
Confidence 1234667899999999887521 23456777877665
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=127.76 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=145.0
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||++ -||+.++++|+++| +.|++.+|+..... ..+. +.+.. .....+.+|++|.+++.++++
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~G-a~V~~~~r~~~~~~-~~~~---~~~~~--g~~~~~~~Dv~d~~~v~~~~~~ 78 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQG-AELAFTYQGEALGK-RVKP---LAESL--GSDFVLPCDVEDIASVDAVFEA 78 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCC-CEEEEecCchHHHH-HHHH---HHHhc--CCceEEeCCCCCHHHHHHHHHH
Confidence 467899999996 99999999999999 59999887642100 0000 10101 123468899999998876653
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... ..++++..+++|+.++.++.+++... .-.++|++||.+.. .
T Consensus 79 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~--~----- 151 (271)
T PRK06505 79 LEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGST--R----- 151 (271)
T ss_pred HHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcc--c-----
Confidence 4799999999431 12446678899999999988877643 12589999997542 1
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+....... ..........+
T Consensus 152 --------~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p-------- 215 (271)
T PRK06505 152 --------VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSP-------- 215 (271)
T ss_pred --------cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCC--------
Confidence 1122457999999999888887644 58999999999987653221101 11111111111
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+..++|+|.+++.++.. ......|+.+.+.++
T Consensus 216 -~~r~~~peeva~~~~fL~s~---~~~~itG~~i~vdgG 250 (271)
T PRK06505 216 -LRRTVTIDEVGGSALYLLSD---LSSGVTGEIHFVDSG 250 (271)
T ss_pred -ccccCCHHHHHHHHHHHhCc---cccccCceEEeecCC
Confidence 12345689999999988751 023456888877776
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=120.64 Aligned_cols=218 Identities=19% Similarity=0.087 Sum_probs=156.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
.+.++.|+.||.|+++++.....+| .|..+.|+..++. ...+...+.++++|.-...-+...+.++..|
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~-svgilsen~~k~~----------l~sw~~~vswh~gnsfssn~~k~~l~g~t~v 121 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVH-SVGILSENENKQT----------LSSWPTYVSWHRGNSFSSNPNKLKLSGPTFV 121 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhce-eeeEeecccCcch----------hhCCCcccchhhccccccCcchhhhcCCccc
Confidence 4689999999999999999999996 9999988765221 1123456788888887776677788889999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
+-+++.. .+...+.++|-....+-.+++++.|+++|+|+|-.. ||. ++.-...|-.+|..+|
T Consensus 122 ~e~~ggf---gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~--------------~~~i~rGY~~gKR~AE 183 (283)
T KOG4288|consen 122 YEMMGGF---GNIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGL--------------PPLIPRGYIEGKREAE 183 (283)
T ss_pred HHHhcCc---cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCC--------------CCccchhhhccchHHH
Confidence 9888743 335677888998899999999999999999999753 211 1122347999999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCC----c---HHHHHHHhcCCCc--e-EEecCCCccccccchhHHHHHHHHHH
Q 012270 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQ----L---VPLLVNLAKPGWT--K-FIIGSGENMSDFTYVENVAHAHVCAA 238 (467)
Q Consensus 169 ~~v~~~~~~~g~~~~ilRp~~i~G~~~~~----~---~~~~~~~~~~g~~--~-~~~g~g~~~~~~i~v~Dva~a~~~al 238 (467)
..+.+. ++.+-+++|||.+||.+.-. . +...+.++.++.. . .++--+.-..+.+.++++|.+.+.++
T Consensus 184 ~Ell~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai 260 (283)
T KOG4288|consen 184 AELLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAI 260 (283)
T ss_pred HHHHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhc
Confidence 998886 66899999999999985321 1 1122223222221 0 12223345678999999999999999
Q ss_pred HHhccccccCCCcEEEEcCCCCcCHHHHHHHHHH
Q 012270 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (467)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~ 272 (467)
+ .+...| .+++.|+.++..+
T Consensus 261 ~-----dp~f~G---------vv~i~eI~~~a~k 280 (283)
T KOG4288|consen 261 E-----DPDFKG---------VVTIEEIKKAAHK 280 (283)
T ss_pred c-----CCCcCc---------eeeHHHHHHHHHH
Confidence 8 455544 4566666665443
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=127.51 Aligned_cols=219 Identities=13% Similarity=0.091 Sum_probs=145.1
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+|+++||||+ +-||+.+++.|.++| +.|++.+|+..... ..++ +.... ... ..+.+|++|.+++.++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G-~~Vil~~r~~~~~~-~~~~---~~~~~-~~~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG-AELAFTYLNEALKK-RVEP---IAQEL-GSD-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEecCHHHHH-HHHH---HHHhc-CCc-eEEEecCCCHHHHHHHHHH
Confidence 46899999997 799999999999999 59999888642000 0000 11111 112 568899999998877654
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... ..++++..+++|+.++..+.+++... .-.++|++||.+.. .
T Consensus 77 i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~--~----- 149 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGV--K----- 149 (274)
T ss_pred HHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCc--c-----
Confidence 4799999999421 12345678999999999988877653 12589999986432 1
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+....... ......... .
T Consensus 150 --------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 212 (274)
T PRK08415 150 --------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEIN---------A 212 (274)
T ss_pred --------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhh---------C
Confidence 1112357999999999988887643 58999999999886542111000 000000000 0
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+..++|+|.+++.++..- .....|+.+.+.++.
T Consensus 213 pl~r~~~pedva~~v~fL~s~~---~~~itG~~i~vdGG~ 249 (274)
T PRK08415 213 PLKKNVSIEEVGNSGMYLLSDL---SSGVTGEIHYVDAGY 249 (274)
T ss_pred chhccCCHHHHHHHHHHHhhhh---hhcccccEEEEcCcc
Confidence 1123567899999999887521 234678888777763
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=124.75 Aligned_cols=218 Identities=15% Similarity=0.123 Sum_probs=145.3
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+++++||||+ +-||++++++|+++| +.|.+.+|+.... ...++ +.+.. .....+.+|++|.+++.++++
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~-~~~~~---~~~~~--~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKAR-PYVEP---LAEEL--DAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhH-HHHHH---HHHhh--ccceEEecCcCCHHHHHHHHHH
Confidence 46899999998 599999999999999 5999988864310 00000 11111 234578899999998876653
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+|+... +.++++..+++|+.++.++.+++... .-.++|++||.... .
T Consensus 82 ~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~--~----- 154 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE--K----- 154 (258)
T ss_pred HHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc--c-----
Confidence 4799999998421 12346789999999999998877643 12479999986432 0
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+..... ............
T Consensus 155 --------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--------- 217 (258)
T PRK07533 155 --------VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERA--------- 217 (258)
T ss_pred --------CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcC---------
Confidence 1123457999999999888877543 589999999998865432111 111111111111
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|.+++.++..- .....|+.+.+.++
T Consensus 218 p~~r~~~p~dva~~~~~L~s~~---~~~itG~~i~vdgg 253 (258)
T PRK07533 218 PLRRLVDIDDVGAVAAFLASDA---ARRLTGNTLYIDGG 253 (258)
T ss_pred CcCCCCCHHHHHHHHHHHhChh---hccccCcEEeeCCc
Confidence 1124567899999999887510 23467777777664
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=123.45 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=143.1
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||++ -||+++++.|+++| +.|++.+|+.... ...++ +... .+....+.+|++|+++++++++
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G-~~vil~~r~~~~~-~~~~~---~~~~--~~~~~~~~~Dl~~~~~v~~~~~~ 77 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLK-GRVEE---FAAQ--LGSDIVLPCDVAEDASIDAMFAE 77 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCC-CEEEEEecchhHH-HHHHH---HHhc--cCCceEeecCCCCHHHHHHHHHH
Confidence 468999999985 89999999999999 5898888763100 00000 1111 1345678899999999887764
Q ss_pred ------CCCEEEEcccCCC------------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCC
Q 012270 84 ------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 ------~~D~Vih~aa~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+||... ..++++..+++|+.++..+.+++... .-.++|++||.+.. .
T Consensus 78 ~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~--~---- 151 (262)
T PRK07984 78 LGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE--R---- 151 (262)
T ss_pred HHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC--C----
Confidence 3799999998421 11234567889999988888876542 12479999987432 0
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|...+.+.+.++.+ .|+++..+-||.+--+.... -............
T Consensus 152 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 214 (262)
T PRK07984 152 ---------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT-------- 214 (262)
T ss_pred ---------CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcC--------
Confidence 1122357999999999998887643 58999999999885431110 0011111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|.+++.++... .....|+.+.+.++
T Consensus 215 -p~~r~~~pedva~~~~~L~s~~---~~~itG~~i~vdgg 250 (262)
T PRK07984 215 -PIRRTVTIEDVGNSAAFLCSDL---SAGISGEVVHVDGG 250 (262)
T ss_pred -CCcCCCCHHHHHHHHHHHcCcc---cccccCcEEEECCC
Confidence 1124567899999999887521 23456778877766
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=133.31 Aligned_cols=196 Identities=13% Similarity=0.084 Sum_probs=132.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC--HHHHH---HH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIK---KV 81 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~---~~ 81 (467)
.+++++||||+|.||++++++|.++| ++|.+++|++.......++ +.......++..+.+|+.+ .+.+. +.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G-~~Vil~~R~~~~l~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~ 127 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG-LNLVLVARNPDKLKDVSDS---IQSKYSKTQIKTVVVDFSGDIDEGVKRIKET 127 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHH---HHHHCCCcEEEEEEEECCCCcHHHHHHHHHH
Confidence 36899999999999999999999999 5999999976521110000 1111112356778899985 33333 33
Q ss_pred HhC--CCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 82 LEG--ASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 82 ~~~--~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
+.+ +|++||+||... +.++.+..+++|+.++.++.+++. +.+..++|++||.+.+...
T Consensus 128 ~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~------- 200 (320)
T PLN02780 128 IEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP------- 200 (320)
T ss_pred hcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-------
Confidence 444 559999998431 112345689999999999888865 3456799999998664210
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.||+..+.+.+.++.+ .|++++++.||.+-.+... .... . ..
T Consensus 201 ------~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~---------~~~~----------~-~~ 254 (320)
T PLN02780 201 ------SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS---------IRRS----------S-FL 254 (320)
T ss_pred ------CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc---------ccCC----------C-CC
Confidence 0112468999999999988887543 5899999999988544211 0000 0 11
Q ss_pred ccchhHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAE 239 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~ 239 (467)
....+++|+.++.++.
T Consensus 255 ~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 255 VPSSDGYARAALRWVG 270 (320)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 3468999999998875
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=122.79 Aligned_cols=219 Identities=16% Similarity=0.076 Sum_probs=143.1
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGa--tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
..+++++|||| ++-||.++++.|+++| +.|++.+|+..... .++ +.+.. ..++..+.+|+.|++++.++++
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G-~~v~l~~r~~~~~~--~~~---~~~~~-~~~~~~~~~Dv~~~~~i~~~~~ 77 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQG-AEVVLTGFGRALRL--TER---IAKRL-PEPAPVLELDVTNEEHLASLAD 77 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCC-CEEEEecCccchhH--HHH---HHHhc-CCCCcEEeCCCCCHHHHHHHHH
Confidence 35689999999 8999999999999999 59999987642100 000 11111 1256789999999998877653
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+||... +.+++...+++|+.++..+.+++... .-.++|++|+....
T Consensus 78 ~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------- 150 (256)
T PRK07889 78 RVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------- 150 (256)
T ss_pred HHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc-------
Confidence 4899999998431 11334557899999999888877643 12478888754221
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..+.+.+.++.+ .|++++.+.||.+-.+...... ...........+.
T Consensus 151 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------ 215 (256)
T PRK07889 151 ---------AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPL------ 215 (256)
T ss_pred ---------cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCcc------
Confidence 1112356999999999888876543 5899999999988654321110 1111111111110
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+.+..++|+|++++.++... .....|+.+.+.++
T Consensus 216 --~~~~~~p~evA~~v~~l~s~~---~~~~tG~~i~vdgg 250 (256)
T PRK07889 216 --GWDVKDPTPVARAVVALLSDW---FPATTGEIVHVDGG 250 (256)
T ss_pred --ccccCCHHHHHHHHHHHhCcc---cccccceEEEEcCc
Confidence 013567999999999887521 13456777777664
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=130.53 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=137.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC-CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
|+++++||||++.||.++++.|+++| + .|++++|+........+. +. ....++..+.+|++|.+++.++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKS---LG--MPKDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHH---hc--CCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999 6 899998875421100000 11 112457788999999998876653
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CC--CCeEEEEcCccccccCCCC--
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSHD-- 142 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~--v~r~v~~SS~~vyg~~~~~-- 142 (467)
++|++||+||... +.++++..+++|+.++..+.+++.. .+ ..|+|++||...+......
T Consensus 76 ~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~ 155 (314)
T TIGR01289 76 RESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNV 155 (314)
T ss_pred HHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcC
Confidence 4899999999421 1234567899999998887666543 32 3699999999776321000
Q ss_pred CCCC------------------CCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccCCC-CCcH
Q 012270 143 IHNG------------------DETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPGD-TQLV 199 (467)
Q Consensus 143 ~~~~------------------~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G~~~-~~~~ 199 (467)
..+. .+.. +..+...|+.||+....+.+.++.+ .|+.++.++||.+..... ....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~ 233 (314)
T TIGR01289 156 PPKANLGDLSGLAAGFKAPIAMIDGK--EFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHV 233 (314)
T ss_pred CCcccccccccccccCCCcccccCCC--CcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccccccc
Confidence 0000 0111 2234567999999977777666432 479999999999853221 1111
Q ss_pred H---HHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 200 P---LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 200 ~---~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
+ .+...... .. ...+..+++.|+.++.++.
T Consensus 234 ~~~~~~~~~~~~----~~------~~~~~~~~~~a~~l~~~~~ 266 (314)
T TIGR01289 234 PLFRTLFPPFQK----YI------TKGYVSEEEAGERLAQVVS 266 (314)
T ss_pred HHHHHHHHHHHH----HH------hccccchhhhhhhhHHhhc
Confidence 1 11111100 00 0124668999999988776
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=122.94 Aligned_cols=218 Identities=13% Similarity=0.102 Sum_probs=142.3
Q ss_pred CCCEEEEEcC--CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGa--tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++|||| ++-||+++++.|+++| +.|++..|..... ...++ +... ......+.+|++|+++++++++
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G-~~v~~~~~~~~~~-~~~~~---~~~~--~~~~~~~~~Dv~~~~~v~~~~~~ 77 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQG-AELAFTYVVDKLE-ERVRK---MAAE--LDSELVFRCDVASDDEINQVFAD 77 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCcHHHH-HHHHH---HHhc--cCCceEEECCCCCHHHHHHHHHH
Confidence 4689999997 6799999999999999 5898877642200 00000 1111 1234578999999999887763
Q ss_pred ------CCCEEEEcccCCCC---------C---CChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCC
Q 012270 84 ------GASTVFYVDATDLN---------T---DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 84 ------~~D~Vih~aa~~~~---------~---~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~ 142 (467)
++|++||+||.... . ++++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 78 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~----- 152 (261)
T PRK08690 78 LGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR----- 152 (261)
T ss_pred HHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc-----
Confidence 48999999994321 1 124556788999888877765432 225799999875431
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.+...... +.....+.+..
T Consensus 153 ----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~------- 215 (261)
T PRK08690 153 ----------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHN------- 215 (261)
T ss_pred ----------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcC-------
Confidence 112345799999999988877642 36899999999988654211110 11111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|++++.++... .....|+.+.+.++
T Consensus 216 --p~~r~~~peevA~~v~~l~s~~---~~~~tG~~i~vdgG 251 (261)
T PRK08690 216 --PLRRNVTIEEVGNTAAFLLSDL---SSGITGEITYVDGG 251 (261)
T ss_pred --CCCCCCCHHHHHHHHHHHhCcc---cCCcceeEEEEcCC
Confidence 1234677999999999988621 23457788877765
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-13 Score=139.56 Aligned_cols=200 Identities=20% Similarity=0.155 Sum_probs=138.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||++.||.++++.|.++| ++|++++|+....... .... ..++..+.+|++|++++.++++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG-DQVVVADRNVERARER-------ADSL-GPDHHALAMDVSDEAQIREGFEQLH 74 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-------HHHh-CCceeEEEeccCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999875421100 0001 2356778999999998877764
Q ss_pred ----CCCEEEEcccCC---------CCCCChhhHHHhhHHHHHHHHHHHHhC----CCC-eEEEEcCccccccCCCCCCC
Q 012270 84 ----GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC----KVR-RLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ----~~D~Vih~aa~~---------~~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~-r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||.. ....+++.++++|+.++..+++++... +-. ++|++||.....
T Consensus 75 ~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~-------- 146 (520)
T PRK06484 75 REFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV-------- 146 (520)
T ss_pred HHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC--------
Confidence 489999999852 122446789999999999998887754 333 899999976541
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHH--H-HHHhcCCCceEEecCCC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPL--L-VNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~--~-~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+++.++.+ .+++++.+.|+.+-.+........ . ....... +
T Consensus 147 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~----- 210 (520)
T PRK06484 147 -------ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSR----I----- 210 (520)
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhc----C-----
Confidence 1123458999999999988877543 479999999998865532211000 0 0000000 0
Q ss_pred ccccccchhHHHHHHHHHHH
Q 012270 220 NMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~ 239 (467)
....+...+|+|.++..++.
T Consensus 211 ~~~~~~~~~~va~~v~~l~~ 230 (520)
T PRK06484 211 PLGRLGRPEEIAEAVFFLAS 230 (520)
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 01134578999999988775
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=123.18 Aligned_cols=219 Identities=14% Similarity=0.076 Sum_probs=145.2
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+++++||||+ +-||.++++.|+++| ++|++..|+... ....++ +.+.. .....+.+|++|+++++++++
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G-~~V~l~~r~~~~-~~~~~~---l~~~~--~~~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAG-AELAFTYQGDAL-KKRVEP---LAAEL--GAFVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCchHH-HHHHHH---HHHhc--CCceEEecCCCCHHHHHHHHHH
Confidence 35789999997 899999999999999 589888775310 000000 11111 234568999999999887754
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... ..++++..+++|+.++..+++++... +-.++|++||.+.. .
T Consensus 82 ~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~--~----- 154 (272)
T PRK08159 82 LEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE--K----- 154 (272)
T ss_pred HHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc--c-----
Confidence 3799999998432 12346779999999999999887754 22589999986432 0
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+.+.++.+ .|+++.++.||.+-.+..... ............
T Consensus 155 --------~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--------- 217 (272)
T PRK08159 155 --------VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA--------- 217 (272)
T ss_pred --------CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCC---------
Confidence 1123457999999999888877543 579999999998864321100 000000000001
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+..++|+|++++.++.. ......|+.+.+.++.
T Consensus 218 p~~r~~~peevA~~~~~L~s~---~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 218 PLRRTVTIEEVGDSALYLLSD---LSRGVTGEVHHVDSGY 254 (272)
T ss_pred cccccCCHHHHHHHHHHHhCc---cccCccceEEEECCCc
Confidence 112356789999999988852 1234578888888763
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-12 Score=121.99 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=143.3
Q ss_pred CCCEEEEEcC--CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGa--tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
+.++++|||| ++-||.+++++|+++| +.|++.+|..... ...++ +.... +....+.+|++|++++.++++
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G-~~v~~~~~~~~~~-~~~~~---~~~~~--~~~~~~~~Dv~d~~~v~~~~~~ 77 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFK-DRITE---FAAEF--GSDLVFPCDVASDEQIDALFAS 77 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCC-CeEEEEccchHHH-HHHHH---HHHhc--CCcceeeccCCCHHHHHHHHHH
Confidence 4689999996 6799999999999999 5898876542100 00000 11111 123467899999999887764
Q ss_pred ------CCCEEEEcccCCC------------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCC
Q 012270 84 ------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 ------~~D~Vih~aa~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+||... ..++++..+++|+.++..+.+++... +-.++|++||.... .
T Consensus 78 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~--~---- 151 (260)
T PRK06997 78 LGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE--R---- 151 (260)
T ss_pred HHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc--c----
Confidence 4899999998421 11345568899999999998887754 23589999987542 0
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..+.+.+.++. .+|++++.+.||.+-.+..... .......+....
T Consensus 152 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 214 (260)
T PRK06997 152 ---------VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNA-------- 214 (260)
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcC--------
Confidence 112245799999999998887754 3589999999998855421111 011111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+...+..++|+|+++..++.. ......|+.+.+.++
T Consensus 215 -p~~r~~~pedva~~~~~l~s~---~~~~itG~~i~vdgg 250 (260)
T PRK06997 215 -PLRRNVTIEEVGNVAAFLLSD---LASGVTGEITHVDSG 250 (260)
T ss_pred -cccccCCHHHHHHHHHHHhCc---cccCcceeEEEEcCC
Confidence 112356789999999998751 023467788877665
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-12 Score=123.92 Aligned_cols=240 Identities=20% Similarity=0.156 Sum_probs=143.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHH-HHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK-KVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~-~~~~- 83 (467)
.+++.|+|+||||.+|+-+++.|+++| +.|+++.|+.....+. +.......+...+..|.....+.. .+.+
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~a~~~------~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~ 149 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQKAEDL------LGVFFVDLGLQNVEADVVTAIDILKKLVEA 149 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChhhhhhh------hcccccccccceeeeccccccchhhhhhhh
Confidence 356799999999999999999999999 6999999987633222 111223456666777666544333 3332
Q ss_pred ---CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCC-CCCCh
Q 012270 84 ---GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCW-KFQDL 159 (467)
Q Consensus 84 ---~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~-~~~~~ 159 (467)
+..+|+-+++......+-..-..+...|++|+++||+.+|++|++++||...- + .+ .|++. .....
T Consensus 150 ~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~---~-----~~--~~~~~~~~~~~ 219 (411)
T KOG1203|consen 150 VPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGT---K-----FN--QPPNILLLNGL 219 (411)
T ss_pred ccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCc---c-----cC--CCchhhhhhhh
Confidence 23466666663322221122336778999999999999999999999987542 1 11 11110 11234
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
+-.+|..+|+++++ .|++++|+||+...-..... .+.. . ....-...+++. --.+.-.|+|+..+.++.
T Consensus 220 ~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~-~~~~---~-~~~~~~~~~~~~--~~~i~r~~vael~~~all 288 (411)
T KOG1203|consen 220 VLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQ-REVV---V-DDEKELLTVDGG--AYSISRLDVAELVAKALL 288 (411)
T ss_pred hhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCc-ceec---c-cCcccccccccc--ceeeehhhHHHHHHHHHh
Confidence 45788899998886 89999999998775432211 0000 0 011101111111 135678899999999887
Q ss_pred HhccccccCCCc-EEEEcCCCCcCHHHHHHHHHHHcCCCCC
Q 012270 240 ALDSRMVSVAGM-AFFITNLEPIKFWDFLSIILEGLGYQRP 279 (467)
Q Consensus 240 ~~~~~~~~~~g~-~yni~~~~~~s~~el~~~i~~~~g~~~~ 279 (467)
.+...++ +.+++. .+.......+.+.+.......
T Consensus 289 -----~~~~~~~k~~~~v~-~~~gpg~~~~~l~~~~~~~~~ 323 (411)
T KOG1203|consen 289 -----NEAATFKKVVELVL-KPEGPGRPYKVLLELFPLDES 323 (411)
T ss_pred -----hhhhccceeEEeec-CCCCCCccHHHHHhhcccccc
Confidence 3555553 333433 333333334445555544433
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=120.04 Aligned_cols=205 Identities=12% Similarity=-0.008 Sum_probs=138.0
Q ss_pred HHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----CCCEEEEcccCCCCCC
Q 012270 24 LVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----GASTVFYVDATDLNTD 99 (467)
Q Consensus 24 lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~~D~Vih~aa~~~~~~ 99 (467)
++++|+++| ++|++++|+.... ...+++.+|++|.+++.++++ ++|+|||+||... ..
T Consensus 1 ~a~~l~~~G-~~Vv~~~r~~~~~----------------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~-~~ 62 (241)
T PRK12428 1 TARLLRFLG-ARVIGVDRREPGM----------------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG-TA 62 (241)
T ss_pred ChHHHHhCC-CEEEEEeCCcchh----------------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC-CC
Confidence 478899999 5999999976410 013567899999999988876 4899999999543 35
Q ss_pred ChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC----------cc----cCCCCCChHHHH
Q 012270 100 DFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET----------LT----CCWKFQDLMCDL 163 (467)
Q Consensus 100 ~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~----------~p----~~~~~~~~Y~~s 163 (467)
+++..+++|+.++..+++++... +-.++|++||...|+... ..+..|. .+ .+..+...|+.+
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 140 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQ--RLELHKALAATASFDEGAAWLAAHPVALATGYQLS 140 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcccc--chHHHHhhhccchHHHHHHhhhccCCCcccHHHHH
Confidence 67889999999999999998764 236999999999885221 1111111 00 123345789999
Q ss_pred HHHHHHHHHhhc----CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 164 KAQAEALVLFAN----NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 164 K~~~E~~v~~~~----~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
|...+.+.+.++ ..+|+++++++||.+.++.........-....... . .....+..++|+|++++.++.
T Consensus 141 K~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~pe~va~~~~~l~s 213 (241)
T PRK12428 141 KEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDSD--A-----KRMGRPATADEQAAVLVFLCS 213 (241)
T ss_pred HHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhhhc--c-----cccCCCCCHHHHHHHHHHHcC
Confidence 999999888776 44689999999999988753321111000000000 0 011235678999999998774
Q ss_pred HhccccccCCCcEEEEcCC
Q 012270 240 ALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~ 258 (467)
.. .....|+...+.++
T Consensus 214 ~~---~~~~~G~~i~vdgg 229 (241)
T PRK12428 214 DA---ARWINGVNLPVDGG 229 (241)
T ss_pred hh---hcCccCcEEEecCc
Confidence 11 12356776766654
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.8e-12 Score=119.09 Aligned_cols=190 Identities=14% Similarity=0.060 Sum_probs=126.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
|+++||||++-||.+++++|. +| +.|++++|+........++ +.+ .....+..+.+|+.|+++++++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 74 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQGLASD---LRQ-RGATSVHVLSFDAQDLDTHRELVKQTQEL 74 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHH---HHh-ccCCceEEEEcccCCHHHHHHHHHHHHHh
Confidence 679999999999999999998 58 5999999876421100000 111 011247789999999998876653
Q ss_pred --CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHH----HhCC-CCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 --GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECK-VRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 --~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa----~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||.... ..+.....++|+.+..+++.++ ++.+ -.++|++||...+ .
T Consensus 75 ~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~--~---------- 142 (246)
T PRK05599 75 AGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW--R---------- 142 (246)
T ss_pred cCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc--c----------
Confidence 47999999994321 1122345677888777655443 3332 3589999997543 1
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+......|+.+|+..+.+.+.++.+ .|++++.+.||.+..+.... . .+ .. -...
T Consensus 143 ---~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~--------~---~~-------~~--~~~~ 199 (246)
T PRK05599 143 ---ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTG--------M---KP-------AP--MSVY 199 (246)
T ss_pred ---CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcC--------C---CC-------CC--CCCC
Confidence 1123468999999998887776543 57999999999886542110 0 00 00 0146
Q ss_pred hhHHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAE 239 (467)
Q Consensus 227 v~Dva~a~~~al~ 239 (467)
++|+|++++.+++
T Consensus 200 pe~~a~~~~~~~~ 212 (246)
T PRK05599 200 PRDVAAAVVSAIT 212 (246)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999987
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=122.49 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=115.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH---
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--- 82 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--- 82 (467)
..+|.++||||+.-||.+++.+|.++|. .++.+.|.........+. +.+.....++..+++|++|.+++++++
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~---l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEE---LRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHH---HHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 4578999999999999999999999995 666666544311111011 222222226999999999999988665
Q ss_pred ----hCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 83 ----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 83 ----~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
.++|++||.||... ...+....+++|+.|+..+.+++... +-.|+|.+||..-+-
T Consensus 86 ~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~---------- 155 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM---------- 155 (282)
T ss_pred HHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc----------
Confidence 36899999999332 22334568999999988887776643 456999999986541
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCCCce---EE-EEeCCCc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL---TC-ALRPSNV 190 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~---~~-ilRp~~i 190 (467)
+....+.|..||.+.+.+...+..+..-. +. ++-||.|
T Consensus 156 -----~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V 197 (282)
T KOG1205|consen 156 -----PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPI 197 (282)
T ss_pred -----CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCce
Confidence 11223489999999998877765443221 21 4667655
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=114.73 Aligned_cols=163 Identities=10% Similarity=0.039 Sum_probs=114.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||++-||++++++|.++| +.|.+++|+........+. +.. ...++..+.+|+.|+++++++++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~---i~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALKDTYEQ---CSA--LTDNVYSFQLKDFSQESIRHLFDAIE 77 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH---HHh--cCCCeEEEEccCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999876421000000 101 12346778899999998876652
Q ss_pred -----CCCEEEEcccCCC-----CC---CChhhHHHhhHHHHHHHHHHHH----hCC-CCeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-----NT---DDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-----~~---~~~~~~~~~nv~g~~~ll~aa~----~~~-v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||... .. +++...+++|..++..+.+++. +.+ -.++|++||...+
T Consensus 78 ~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~--------- 148 (227)
T PRK08862 78 QQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH--------- 148 (227)
T ss_pred HHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC---------
Confidence 5899999997211 11 2234466778877776655443 332 3589999985332
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~ 193 (467)
.+...|+.+|+..+.+.+.++. .+|+++..+.||.+-.+
T Consensus 149 ---------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 ---------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 1235799999999998877754 36899999999988655
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=104.13 Aligned_cols=217 Identities=15% Similarity=0.112 Sum_probs=150.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+.+.++||||+.-||++++..|.++| ++|.+.+++..... +. -.......+-..+.+|+.++.++...++
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~G-arv~v~dl~~~~A~---at---a~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~ 85 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKG-ARVAVADLDSAAAE---AT---AGDLGGYGDHSAFSCDVSKAHDVQNTLEEME 85 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcC-cEEEEeecchhhHH---HH---HhhcCCCCccceeeeccCcHHHHHHHHHHHH
Confidence 45789999999999999999999999 69999988765211 11 1111112345668899999887766543
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CC--CeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KV--RRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v--~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
.++++++|||... ..++|...+.+|..|+..+-+++.+. +. -++|.+||. .|.-.
T Consensus 86 k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSI--VGkiG------ 157 (256)
T KOG1200|consen 86 KSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSI--VGKIG------ 157 (256)
T ss_pred HhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhh--hcccc------
Confidence 3799999999432 46789999999999998888876654 22 289999997 32110
Q ss_pred CCCcccCCCCCChHHHHHHH----HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQ----AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~----~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
.-.++.|+.+|.- .....++.++ .++++..+-||.|--|....+-+..+..+...-|.-..|
T Consensus 158 -------N~GQtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G------ 223 (256)
T KOG1200|consen 158 -------NFGQTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLG------ 223 (256)
T ss_pred -------cccchhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhhhhcCHHHHHHHHccCCccccC------
Confidence 1234556666542 1222333333 579999999999988876666677777777766654444
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+|+|..++.++.. ...-..|..+.++++
T Consensus 224 ---~~EevA~~V~fLAS~---~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 224 ---EAEEVANLVLFLASD---ASSYITGTTLEVTGG 253 (256)
T ss_pred ---CHHHHHHHHHHHhcc---ccccccceeEEEecc
Confidence 378999998877641 134466778888775
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=111.56 Aligned_cols=194 Identities=14% Similarity=0.103 Sum_probs=138.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+..+|||||++-+|+.++.+++++| ..+.+.|.+........+. .++. .++..+.+|++|.+++.+..+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg-~~~vl~Din~~~~~etv~~---~~~~---g~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG-AKLVLWDINKQGNEETVKE---IRKI---GEAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC-CeEEEEeccccchHHHHHH---HHhc---CceeEEEecCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999 4899999877532222111 1111 368899999999998776653
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
.+|++||.||... +.+.-+.++++|+.+.....++ +.+.+-.|+|-++|+.-+.
T Consensus 110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~----------- 178 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF----------- 178 (300)
T ss_pred HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc-----------
Confidence 3899999999332 2333467999999987665554 4555667999999986552
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhc------CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFAN------NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~------~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
.......|+.||.++.-..+.+. +..|++++.+-|+.+= ++ ++.. ..+. ....
T Consensus 179 ----g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~----Tg----mf~~-~~~~--------~~l~ 237 (300)
T KOG1201|consen 179 ----GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN----TG----MFDG-ATPF--------PTLA 237 (300)
T ss_pred ----CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc----cc----ccCC-CCCC--------cccc
Confidence 22445789999998876654442 3357999999987662 11 1111 1111 2457
Q ss_pred cccchhHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~ 239 (467)
+.+..+.+|+.++.+++
T Consensus 238 P~L~p~~va~~Iv~ai~ 254 (300)
T KOG1201|consen 238 PLLEPEYVAKRIVEAIL 254 (300)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 88899999999999998
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=120.58 Aligned_cols=176 Identities=12% Similarity=0.032 Sum_probs=115.5
Q ss_pred EEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-------C
Q 012270 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-------G 84 (467)
Q Consensus 12 lVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-------~ 84 (467)
+||||++.||.+++++|+++|++.|++.+|+........+. +. ....++..+.+|+.|.+++.++++ +
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~ 75 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKS---AG--MPKDSYTVMHLDLASLDSVRQFVDNFRRSGRP 75 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH---hc--CCCCeEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence 59999999999999999999933899988865421100000 10 012357788999999999877654 4
Q ss_pred CCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CC--CCeEEEEcCccccccCC----CCCCCC
Q 012270 85 ASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGS----HDIHNG 146 (467)
Q Consensus 85 ~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~--v~r~v~~SS~~vyg~~~----~~~~~~ 146 (467)
+|++||+||... +.++++..+++|+.|+..+.+++.. .+ ..|+|++||...+-... .+....
T Consensus 76 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 155 (308)
T PLN00015 76 LDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 155 (308)
T ss_pred CCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccch
Confidence 799999999421 1234567899999998887665443 33 46999999986541100 000000
Q ss_pred -----------CCCc--c---cCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCccc
Q 012270 147 -----------DETL--T---CCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFG 192 (467)
Q Consensus 147 -----------~E~~--p---~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G 192 (467)
++.. + .+..+...|+.||+..+...+.++.+ .|+.++.+.||.|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 156 GDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred hhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 0000 0 01134467999999866665555432 479999999999964
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-11 Score=117.36 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=117.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCC---CCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD---PSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~---~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
++|+++||||++.||.+++++|+++| +.|++++|+...... ..+......+.. ...++..+.+|+.|+++++++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 56899999999999999999999999 599999987531100 000000000001 123467889999999988876
Q ss_pred Hh-------CCCEEEEcc-cCC------C-----CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCcccccc
Q 012270 82 LE-------GASTVFYVD-ATD------L-----NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFD 138 (467)
Q Consensus 82 ~~-------~~D~Vih~a-a~~------~-----~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~ 138 (467)
++ ++|++||+| +.. . ..+++...+++|+.++..+.+++... +-.++|++||.....
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~- 164 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY- 164 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc-
Confidence 54 479999999 631 1 11234567888999988887766543 235899999964321
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCccc
Q 012270 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFG 192 (467)
Q Consensus 139 ~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G 192 (467)
... +......|+.+|+..+.+.+.++.+ .|+++..+.||.+-.
T Consensus 165 ~~~-----------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T 210 (305)
T PRK08303 165 NAT-----------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRS 210 (305)
T ss_pred cCc-----------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCcccc
Confidence 000 1112357999999999988776543 579999999988743
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-12 Score=110.77 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=111.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCC--CCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST--QSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
|+++||||++-||+.++++|+++|.+.|.++.|+ ......... .+. ....++.++++|++++++++.+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~---~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQ---ELK--APGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHH---HHH--HTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccc---ccc--ccccccccccccccccccccccccccc
Confidence 5799999999999999999999965688888887 110000000 001 123578899999999998887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
..|++||+++... ..++.+..+++|+.+...+.+++...+-.++|++||.....
T Consensus 76 ~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 140 (167)
T PF00106_consen 76 KRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR--------------- 140 (167)
T ss_dssp HHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS---------------
T ss_pred cccccccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc---------------
Confidence 4799999999433 12345679999999999999999886667999999986641
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcC
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANN 176 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~ 176 (467)
+......|+.+|+..+.+++.++.
T Consensus 141 ~~~~~~~Y~askaal~~~~~~la~ 164 (167)
T PF00106_consen 141 GSPGMSAYSASKAALRGLTQSLAA 164 (167)
T ss_dssp SSTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Confidence 223456899999999999988754
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-10 Score=108.96 Aligned_cols=223 Identities=9% Similarity=-0.002 Sum_probs=138.0
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC--CCCCCC--cCC----CCCeEEEEecC--C
Q 012270 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES--NSLLPD--SLS----SGRAEYHQVDV--R 73 (467)
Q Consensus 6 ~~~~~ilVtGa--tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~--~~~----~~~v~~~~~Dl--~ 73 (467)
.++|+++|||| +.-||.++++.|.++| .+|++ .|........... ...+.. ... ......+.+|+ .
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~G-a~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 84 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAG-AEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD 84 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence 56899999999 7999999999999999 58887 4432110000000 000000 000 01135677888 3
Q ss_pred CHH------------------HHHHHHh-------CCCEEEEcccCC---------CCCCChhhHHHhhHHHHHHHHHHH
Q 012270 74 DIS------------------QIKKVLE-------GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTAC 119 (467)
Q Consensus 74 d~~------------------~l~~~~~-------~~D~Vih~aa~~---------~~~~~~~~~~~~nv~g~~~ll~aa 119 (467)
+++ ++.++++ ++|++||+||.. .+.+++..++++|+.++..+.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~ 164 (303)
T PLN02730 85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF 164 (303)
T ss_pred ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 222 4444432 489999999621 123457889999999999998877
Q ss_pred HhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCC-C-ChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcc
Q 012270 120 REC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-Q-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVF 191 (467)
Q Consensus 120 ~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~-~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~ 191 (467)
... .-.++|++||..... ..| . ..|+.+|+..+.+.+.++.+ .|+++..+-||.+-
T Consensus 165 ~p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~ 228 (303)
T PLN02730 165 GPIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLG 228 (303)
T ss_pred HHHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCcc
Confidence 654 115899999975531 112 2 36999999999988887642 57999999998886
Q ss_pred cCCCCCc--HHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 192 GPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 192 G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
-+..... ............ ....+...+|+|.+++.++... .....|+.+.+.++
T Consensus 229 T~~~~~~~~~~~~~~~~~~~~---------pl~r~~~peevA~~~~fLaS~~---a~~itG~~l~vdGG 285 (303)
T PLN02730 229 SRAAKAIGFIDDMIEYSYANA---------PLQKELTADEVGNAAAFLASPL---ASAITGATIYVDNG 285 (303)
T ss_pred CchhhcccccHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcc---ccCccCCEEEECCC
Confidence 5432210 011111111110 1123467899999999987511 23457777777665
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=106.22 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=121.3
Q ss_pred CCCCCEEEEEcCC-ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 5 EAIPRTCVVLNGR-GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 5 ~~~~~~ilVtGat-GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
++..+.|||||++ |-||.+|++++.++| +.|.+..|..+. +.+.....++.....|+.+++++.+...
T Consensus 4 ~~~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~AtaR~~e~----------M~~L~~~~gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGGIGYALAKEFARNG-YLVYATARRLEP----------MAQLAIQFGLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred ccCCCeEEEeecCCcchhHHHHHHHHhCC-eEEEEEccccch----------HhhHHHhhCCeeEEeccCChHHHHHHHH
Confidence 3467899999987 999999999999999 699999987752 3333334578899999999999877653
Q ss_pred --------CCCEEEEcccC-------CCCCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCC
Q 012270 84 --------GASTVFYVDAT-------DLNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 --------~~D~Vih~aa~-------~~~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
+.|.++|.||. +....+-+.++++|+.|..++.++.... .-..+|++.|..+|-
T Consensus 73 evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v-------- 144 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV-------- 144 (289)
T ss_pred HHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe--------
Confidence 26999999992 2233456789999999999988887654 124799999998872
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNV 190 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i 190 (467)
|......|..||++.-++.+-+.- -+|++++.+-+|.|
T Consensus 145 -------pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv 185 (289)
T KOG1209|consen 145 -------PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGV 185 (289)
T ss_pred -------ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccce
Confidence 233457899999998887766532 25677777776655
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-11 Score=114.34 Aligned_cols=184 Identities=13% Similarity=0.037 Sum_probs=128.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+++++|||||.-||.++++.|.++| .+|+...|+........++ +........+.++++|+.|.+++.+..+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~~~~~~~~~~---i~~~~~~~~i~~~~lDLssl~SV~~fa~~~ 108 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG-AHVVLACRNEERGEEAKEQ---IQKGKANQKIRVIQLDLSSLKSVRKFAEEF 108 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHH---HHhcCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 6999999987432221111 2223345678889999999999887754
Q ss_pred -----CCCEEEEcccCCC-----CCCChhhHHHhhHHHHHHHHH----HHHhCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-----~~~~~~~~~~~nv~g~~~ll~----aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
..|+.|+.||+.. ..+..+.++.+|..|...|.+ .++.....|+|++||..- +..........|.
T Consensus 109 ~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~ 187 (314)
T KOG1208|consen 109 KKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEK 187 (314)
T ss_pred HhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchh
Confidence 3699999999433 335578899999998666554 455554479999999754 1110000011111
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCC
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGD 195 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~ 195 (467)
.. .......|+.||.+......+++++. |+.+..+.||.+..+.-
T Consensus 188 ~~-~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 188 AK-LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred cc-CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 10 01222259999999888877776554 69999999999988743
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=109.92 Aligned_cols=227 Identities=16% Similarity=0.091 Sum_probs=149.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
...+|.++||||+.-||++++++|.+.| .+|++.+|+.......... ........+++..+.+|+++.++.+++++
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~ 81 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAG-AKVVITGRSEERLEETAQE--LGGLGYTGGKVLAIVCDVSKEVDVEKLVEF 81 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH--HHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence 3468899999999999999999999999 5999999987521111000 00111124568889999999877665542
Q ss_pred -------CCCEEEEcccCCC--------CCCChhhHHHhhHHH-HHHHHHHHHhC----CCCeEEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQG-AKNVVTACREC----KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g-~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~ 143 (467)
+.|++|+.||... +.+.++..+++|+.| ...+..++... +-..++++||..-+...
T Consensus 82 ~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~---- 157 (270)
T KOG0725|consen 82 AVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG---- 157 (270)
T ss_pred HHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC----
Confidence 4899999999321 345678899999995 66666666544 34578999988654211
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC-CcH----HHHHHHhcCCCceEEe
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QLV----PLLVNLAKPGWTKFII 215 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~-~~~----~~~~~~~~~g~~~~~~ 215 (467)
..+...|+.+|...+++.+..+. ++|+++.++-|+.|..+... ... ..+.........
T Consensus 158 ----------~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~---- 223 (270)
T KOG0725|consen 158 ----------PGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGA---- 223 (270)
T ss_pred ----------CCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccc----
Confidence 11227899999999999988763 36899999999998877521 111 122211101111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...-.+.-++|+|.+....+.. +..-..|+...+.++
T Consensus 224 ---~p~gr~g~~~eva~~~~fla~~---~asyitG~~i~vdgG 260 (270)
T KOG0725|consen 224 ---VPLGRVGTPEEVAEAAAFLASD---DASYITGQTIIVDGG 260 (270)
T ss_pred ---cccCCccCHHHHHHhHHhhcCc---ccccccCCEEEEeCC
Confidence 1122455689999998877651 012345666666554
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-11 Score=115.02 Aligned_cols=190 Identities=15% Similarity=0.074 Sum_probs=127.5
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK 79 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 79 (467)
|..+..+|++|.|+|++|.||+.++..|..++. ++++++|+.... ....+ +.+.. . .....+.+|+.++.
T Consensus 1 ~~~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~--g~a~D---l~~~~--~--~~~v~~~td~~~~~ 71 (321)
T PTZ00325 1 MRPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP--GVAAD---LSHID--T--PAKVTGYADGELWE 71 (321)
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc--ccccc---hhhcC--c--CceEEEecCCCchH
Confidence 666677899999999999999999999986653 489999993210 00000 11111 1 23345666655567
Q ss_pred HHHhCCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCC
Q 012270 80 KVLEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (467)
Q Consensus 80 ~~~~~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~ 158 (467)
++++++|+||+++|.... ..+....+..|+..+.++++++++++++++|+++|--+-...........+.+ ...|..
T Consensus 72 ~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~s--g~p~~~ 149 (321)
T PTZ00325 72 KALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAG--VYDPRK 149 (321)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhcc--CCChhh
Confidence 789999999999996543 34577889999999999999999999999999999755321110000111222 334556
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHHHH
Q 012270 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLL 202 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-~~~~~~ 202 (467)
.||.+-...=++-...++..+++...++ +.|+|.+.. ..++.|
T Consensus 150 viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd~s~v~~~ 193 (321)
T PTZ00325 150 LFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSGVTIVPLL 193 (321)
T ss_pred eeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCCcccccch
Confidence 6776644444444445566788888888 888888765 455544
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-11 Score=114.64 Aligned_cols=210 Identities=17% Similarity=0.104 Sum_probs=143.7
Q ss_pred cCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH--------hC
Q 012270 15 NGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--------EG 84 (467)
Q Consensus 15 Gat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--------~~ 84 (467)
|++ +-||++++++|+++| +.|++.+|+....... +.......+.+.+.+|+.|++++.+++ .+
T Consensus 1 g~~~s~GiG~aia~~l~~~G-a~V~~~~~~~~~~~~~------~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~ 73 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG-ANVILTDRNEEKLADA------LEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGR 73 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT-EEEEEEESSHHHHHHH------HHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCChHHHHHHHHHHCC-CEEEEEeCChHHHHHH------HHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCC
Confidence 566 999999999999999 5999999988621000 111111123456999999999887764 34
Q ss_pred CCEEEEcccCCCC-----------CCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 85 ASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 85 ~D~Vih~aa~~~~-----------~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
+|++||+++.... .+++...+++|+.++..+++++... .-.++|++||.....
T Consensus 74 iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~-------------- 139 (241)
T PF13561_consen 74 IDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR-------------- 139 (241)
T ss_dssp ESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS--------------
T ss_pred eEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc--------------
Confidence 7999999984322 1345678999999999999988654 125799999875431
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhc---CC-CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFAN---NI-DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~---~~-~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|+..+.+++.++ .. +|+++..|.||.+-.+.... ....+........| ...+.
T Consensus 140 -~~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~p---------l~r~~ 209 (241)
T PF13561_consen 140 -PMPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIP---------LGRLG 209 (241)
T ss_dssp -BSTTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHST---------TSSHB
T ss_pred -cCccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhc---------cCCCc
Confidence 12334589999999999888775 23 68999999998886543111 11233333332222 22355
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++|+|.+++.++.. ......|+++.+.+|
T Consensus 210 ~~~evA~~v~fL~s~---~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 210 TPEEVANAVLFLASD---AASYITGQVIPVDGG 239 (241)
T ss_dssp EHHHHHHHHHHHHSG---GGTTGTSEEEEESTT
T ss_pred CHHHHHHHHHHHhCc---cccCccCCeEEECCC
Confidence 799999999988862 123578888888775
|
... |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=105.15 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=113.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHhC----
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEG---- 84 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~---- 84 (467)
+++||||+|-||..+++.|.++|...|+++.|+........+. +... ....++.++.+|++|++++.++++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~---i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAA---IRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHH---HHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHH---HHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 5899999999999999999999877899999984211111000 1110 1134688899999999999999864
Q ss_pred ---CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 85 ---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 85 ---~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
++.|||+|+... ..++....+..-+.|+.+|.++.....++.+|.+||.+.... .
T Consensus 79 ~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G---------------~ 143 (181)
T PF08659_consen 79 FGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLG---------------G 143 (181)
T ss_dssp SS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT----------------
T ss_pred cCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhcc---------------C
Confidence 588999999432 223345678888999999999999989999999999876421 1
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCC
Q 012270 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~ 189 (467)
.....|+..-...+.+.+.... .|.+++++.-+.
T Consensus 144 ~gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 144 PGQSAYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred cchHhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 2457899999999988887655 688988887643
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-09 Score=102.75 Aligned_cols=227 Identities=10% Similarity=0.033 Sum_probs=133.9
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCc-CCCCC--------CC----------cCCCC
Q 012270 5 EAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE-SNSLL--------PD----------SLSSG 63 (467)
Q Consensus 5 ~~~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~-~~~~~--------~~----------~~~~~ 63 (467)
..++|+++||||+ .-||+++++.|.++| ++|++.++.+........ ..... .. ...-.
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~G-a~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 83 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAG-ATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD 83 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCC-CEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence 4468899999995 899999999999999 699887654200000000 00000 00 00001
Q ss_pred CeEEEEecCCCH--------HHHHHHH-------hCCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHH
Q 012270 64 RAEYHQVDVRDI--------SQIKKVL-------EGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTAC 119 (467)
Q Consensus 64 ~v~~~~~Dl~d~--------~~l~~~~-------~~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa 119 (467)
..+-+..|+++. +++.+++ .++|++||+||... +.++++..+++|+.++.++.+++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~ 163 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF 163 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 122233333331 1233332 24899999997321 22456788999999999999888
Q ss_pred HhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC----CCCceEEEEeCCCcccC
Q 012270 120 REC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNVFGP 193 (467)
Q Consensus 120 ~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~----~~g~~~~ilRp~~i~G~ 193 (467)
... .-.++|.+||.... ... + .....|+.+|+..+.+.+.++. .+|+++..+.||.+--+
T Consensus 164 ~p~m~~~G~ii~iss~~~~--~~~-----------p-~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~ 229 (299)
T PRK06300 164 GPIMNPGGSTISLTYLASM--RAV-----------P-GYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASR 229 (299)
T ss_pred HHHhhcCCeEEEEeehhhc--CcC-----------C-CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccCh
Confidence 764 22478999886443 100 1 1113699999999988877653 24899999999988554
Q ss_pred CCCCc--HHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 194 GDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 194 ~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..... ............+ ...+...+|+|.+++.++... .....|+.+.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~p---------~~r~~~peevA~~v~~L~s~~---~~~itG~~i~vdGG 284 (299)
T PRK06300 230 AGKAIGFIERMVDYYQDWAP---------LPEPMEAEQVGAAAAFLVSPL---ASAITGETLYVDHG 284 (299)
T ss_pred hhhcccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCcc---ccCCCCCEEEECCC
Confidence 32110 0111111111111 123456899999999877411 23466888887765
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=101.95 Aligned_cols=164 Identities=17% Similarity=0.143 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCcc-CCCCcCCCCCCCcCCC-CCeEEEEecCCC-HHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESNSLLPDSLSS-GRAEYHQVDVRD-ISQIKKVL 82 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d-~~~l~~~~ 82 (467)
.++|+++||||++-||..+++.|.++| +.|++..|..... ...... ... ... ..+....+|+++ .+++..++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G-~~v~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~Dvs~~~~~v~~~~ 77 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG-ARVVVAARRSEEEAAEALAA---AIK-EAGGGRAAAVAADVSDDEESVEALV 77 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEcCCCchhhHHHHHH---HHH-hcCCCcEEEEEecCCCCHHHHHHHH
Confidence 367899999999999999999999999 5888777765421 000000 000 001 357778899998 87776554
Q ss_pred h-------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhCCCC--eEEEEcCccccccCCCCCCC
Q 012270 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~--r~v~~SS~~vyg~~~~~~~~ 145 (467)
+ +.|++||+|+... ..++++..+++|+.+...+.+++... .+ ++|++||.... ..
T Consensus 78 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~-~~~~~Iv~isS~~~~-~~------ 149 (251)
T COG1028 78 AAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPL-MKKQRIVNISSVAGL-GG------ 149 (251)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHh-hhhCeEEEECCchhc-CC------
Confidence 3 3899999999432 12456789999999988888844432 22 89999998653 11
Q ss_pred CCCCcccCCCC-CChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc
Q 012270 146 GDETLTCCWKF-QDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF 191 (467)
Q Consensus 146 ~~E~~p~~~~~-~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~ 191 (467)
.+ ...|+.||+..+.+.+.++.+ .|++++.+-||.+-
T Consensus 150 ---------~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 150 ---------PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 11 478999999999888777633 68999999999543
|
|
| >KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-11 Score=110.47 Aligned_cols=82 Identities=37% Similarity=0.515 Sum_probs=74.4
Q ss_pred ccccccchhhhhcCCccccchhccccccchhhHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhcc---------
Q 012270 367 RDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGI--------- 437 (467)
Q Consensus 367 ~~~~~~~~~~~llg~G~~ad~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 437 (467)
+.+.++...++.+|+|+++|.++|||++.+++++.+++++|.+|+..+|+++|++|.++++++.++|+|++
T Consensus 26 rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~ 105 (230)
T KOG1792|consen 26 RLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKS 105 (230)
T ss_pred cccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34667788999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -----CC-Ccccccccc
Q 012270 438 -----LP-SNINSDKRF 448 (467)
Q Consensus 438 -----~~-~~~~~~~~~ 448 (467)
+| +..++||.+
T Consensus 106 ~~~~~lp~~i~ipee~~ 122 (230)
T KOG1792|consen 106 EPGAYLPVEITIPEEFV 122 (230)
T ss_pred CccccCCceeecCHHHH
Confidence 55 666777654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=97.79 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=117.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++.+||||||+.-||..|++++.+.|. +|++..|+... +.+.. ..|.+.-..+|+.|.++.++.++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~----------L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewL 72 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEER----------LAEAKAENPEIHTEVCDVADRDSRRELVEWL 72 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHH----------HHHHHhcCcchheeeecccchhhHHHHHHHH
Confidence 578999999999999999999999995 99999997751 22211 24677888999999987766654
Q ss_pred -----CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
..+++||+||... ...+-+..+++|..++.+|..+...+ .-.-+|.+||.-.+ .
T Consensus 73 kk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLaf--------v 144 (245)
T COG3967 73 KKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAF--------V 144 (245)
T ss_pred HhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccccc--------C
Confidence 2699999999321 11223567889999999988877655 23469999997654 1
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhh---cCCCCceEEEEeCCCcccC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFA---NNIDGLLTCALRPSNVFGP 193 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~---~~~~g~~~~ilRp~~i~G~ 193 (467)
|......|..+|+..--+...+ .+..++.++-+-|+.|--+
T Consensus 145 -------Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 -------PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred -------cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 2223347899998776554433 3335789999999888654
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=98.34 Aligned_cols=216 Identities=15% Similarity=0.053 Sum_probs=140.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|++++|||.|-||..+.++|+++|...+.+.+|-.. .+....+....++..+.++++|+.+..++++++++
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En-----~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN-----PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC-----HHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 58999999999999999999999999644444444333 11112244555677899999999999999888764
Q ss_pred -----CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHH----HHhC--C-CCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 85 -----ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTA----CREC--K-VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 85 -----~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~a----a~~~--~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
.|++||-||..+ +.|++.++.+|..|..|--.. ..+. | -.-+|.+||. +|-.
T Consensus 79 ~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv--~GL~------------- 142 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSV--AGLD------------- 142 (261)
T ss_pred HHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccc--cccC-------------
Confidence 699999999665 467999999998876664444 3332 1 1248899986 4311
Q ss_pred CCCCCChHHHHHHHHHHHHHhh-----cCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcC-CCceEEecCC----Cccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFA-----NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP-GWTKFIIGSG----ENMS 222 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~-----~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~-g~~~~~~g~g----~~~~ 222 (467)
|-.-...|+.||+..--+.|.+ -.+.|+++..+.|+.+- ..++..+.. +.. .-.++. -...
T Consensus 143 P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~--------t~l~~~~~~~~~~-~e~~~~~~~~l~~~ 213 (261)
T KOG4169|consen 143 PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR--------TDLAENIDASGGY-LEYSDSIKEALERA 213 (261)
T ss_pred ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch--------HHHHHHHHhcCCc-ccccHHHHHHHHHc
Confidence 2223357999988655444442 23379999999997551 122222221 111 000000 0001
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.--...++|..++.++| ....|.+|-+..+
T Consensus 214 ~~q~~~~~a~~~v~aiE------~~~NGaiw~v~~g 243 (261)
T KOG4169|consen 214 PKQSPACCAINIVNAIE------YPKNGAIWKVDSG 243 (261)
T ss_pred ccCCHHHHHHHHHHHHh------hccCCcEEEEecC
Confidence 22346889999999998 3457778888776
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=90.76 Aligned_cols=204 Identities=16% Similarity=0.084 Sum_probs=136.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc-CCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++.++||||+.-||-.|+++|++...-++.+.. |+++.. .++ .......+++++.++.|+++.+++.++.+
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---~~~--l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~ 77 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---ATE--LALKSKSDSRVHIIQLDVTCDESIDNFVQEVE 77 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---hHH--HHHhhccCCceEEEEEecccHHHHHHHHHHHH
Confidence 467999999999999999999987433444444 445422 111 01122347899999999999888776653
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hCCC-----------CeEEEEcCcc
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKV-----------RRLVYNSTAD 134 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v-----------~r~v~~SS~~ 134 (467)
|.|.+++.||... ....+..++++|..|+..+.+++- +... ..+|++||..
T Consensus 78 ~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~ 157 (249)
T KOG1611|consen 78 KIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSA 157 (249)
T ss_pred hhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccc
Confidence 4699999999321 112256799999999887766543 1111 2688899874
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc
Q 012270 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (467)
Q Consensus 135 vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~ 211 (467)
.-- .-. ...+...|..||++.-...+..+ +..++-++.+.||+|=-.. |+
T Consensus 158 ~s~---------~~~---~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDM--------------gg- 210 (249)
T KOG1611|consen 158 GSI---------GGF---RPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDM--------------GG- 210 (249)
T ss_pred ccc---------CCC---CCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCC--------------CC-
Confidence 421 111 33566799999999888877764 2357889999998873111 11
Q ss_pred eEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEE
Q 012270 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (467)
Q Consensus 212 ~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni 255 (467)
.-.-+.+++-+.-++..+.++. +...|.-||-
T Consensus 211 ---------~~a~ltveeSts~l~~~i~kL~---~~hnG~ffn~ 242 (249)
T KOG1611|consen 211 ---------KKAALTVEESTSKLLASINKLK---NEHNGGFFNR 242 (249)
T ss_pred ---------CCcccchhhhHHHHHHHHHhcC---cccCcceEcc
Confidence 1245668888888888888763 4456655544
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=126.22 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=124.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC------C----------------------cCCCC---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP------S----------------------ESNSL--- 55 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~------~----------------------~~~~~--- 55 (467)
+++++|||||++-||..++++|.+++..+|++++|+......+ . +....
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4679999999999999999999998425899999973100000 0 00000
Q ss_pred ----------CCCc-CCCCCeEEEEecCCCHHHHHHHHh------CCCEEEEcccCCC-------CCCChhhHHHhhHHH
Q 012270 56 ----------LPDS-LSSGRAEYHQVDVRDISQIKKVLE------GASTVFYVDATDL-------NTDDFYNCYMIIVQG 111 (467)
Q Consensus 56 ----------~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g 111 (467)
+... ....++.++.+|++|.+++.++++ ++|.|||+||... ..+++...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 0000 012457889999999999887764 4799999999432 235577899999999
Q ss_pred HHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC-CceEEEEeCCCc
Q 012270 112 AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNV 190 (467)
Q Consensus 112 ~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~ilRp~~i 190 (467)
+.++++++.....+++|++||...+.. ......|+.+|...+.+.+.++.+. +++++.+.||.+
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G---------------~~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~w 2220 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYG---------------NTGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPW 2220 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCC---------------CCCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCee
Confidence 999999998877789999999865421 1234679999998888877766544 588999999876
Q ss_pred ccC
Q 012270 191 FGP 193 (467)
Q Consensus 191 ~G~ 193 (467)
-|+
T Consensus 2221 dtg 2223 (2582)
T TIGR02813 2221 DGG 2223 (2582)
T ss_pred cCC
Confidence 554
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=101.46 Aligned_cols=202 Identities=21% Similarity=0.189 Sum_probs=136.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG---- 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 84 (467)
.+|+||||+.-+|-.++..+..+|+ .|+++.|+..+....... +........+.+..+|+.|.+++...+++
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~~---l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~ 109 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKAE---LELLTQVEDVSYKSVDVIDYDSVSKVIEELRDL 109 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHhh---hhhhhccceeeEeccccccHHHHHHHHhhhhhc
Confidence 5899999999999999999999995 999999987643222221 22222233477899999999999888753
Q ss_pred ---CCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHHhC--C---CCeEEEEcCccccccCCCCCCCCCCC
Q 012270 85 ---ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--K---VRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 85 ---~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~~~--~---v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
+|.+|||||.. .+....+..+++|..|+.|++.++... . ..+++.+||.....
T Consensus 110 ~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~------------ 177 (331)
T KOG1210|consen 110 EGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML------------ 177 (331)
T ss_pred cCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc------------
Confidence 69999999932 133445679999999999998877654 1 23889998875431
Q ss_pred cccCCCCCChHHHHHHH----HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQ----AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~----~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+....+.|+.+|.+ +|.+-++..+ +|+.++..-|+.+--|+-.. ....+-....+... ..+.+
T Consensus 178 ---~i~GysaYs~sK~alrgLa~~l~qE~i~-~~v~Vt~~~P~~~~tpGfE~------En~tkP~~t~ii~g---~ss~~ 244 (331)
T KOG1210|consen 178 ---GIYGYSAYSPSKFALRGLAEALRQELIK-YGVHVTLYYPPDTLTPGFER------ENKTKPEETKIIEG---GSSVI 244 (331)
T ss_pred ---CcccccccccHHHHHHHHHHHHHHHHhh-cceEEEEEcCCCCCCCcccc------ccccCchheeeecC---CCCCc
Confidence 33445666666654 4444444333 68999999998887775221 00111111112211 23447
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
-.+++|.+++.-+.
T Consensus 245 ~~e~~a~~~~~~~~ 258 (331)
T KOG1210|consen 245 KCEEMAKAIVKGMK 258 (331)
T ss_pred CHHHHHHHHHhHHh
Confidence 79999999988775
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-09 Score=97.34 Aligned_cols=164 Identities=19% Similarity=0.124 Sum_probs=121.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
...+-|+|||.-.-.|+.|+++|.++| +.|.+-...+.. .+. +.....+++...++.|++++++++++.+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~~g----ae~---L~~~~~s~rl~t~~LDVT~~esi~~a~~~V 98 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTEEG----AES---LRGETKSPRLRTLQLDVTKPESVKEAAQWV 98 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecCch----HHH---HhhhhcCCcceeEeeccCCHHHHHHHHHHH
Confidence 346779999999999999999999999 588887744331 111 2222226888999999999999998865
Q ss_pred -------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCC
Q 012270 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
+--.|||+||... ..+++....++|..|+.++..+.... --.|+|++||..- ..
T Consensus 99 ~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G---R~----- 170 (322)
T KOG1610|consen 99 KKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG---RV----- 170 (322)
T ss_pred HHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc---Cc-----
Confidence 3468999999321 23556789999999999888776644 1349999999742 11
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~ 193 (467)
+.....+|..||...|........ .+|+.+.++-|| +|-.
T Consensus 171 -------~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 171 -------ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT 213 (322)
T ss_pred -------cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence 223467899999999988665542 379999999999 4433
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=104.21 Aligned_cols=184 Identities=15% Similarity=0.061 Sum_probs=125.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
...+|+|||++|.||+.++..|..++. .+++++|+.+.... ..+ +.+.. . .....++.+.+++.++++++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~--a~D---l~~~~--~--~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV--AAD---VSHIN--T--PAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee--Ech---hhhCC--c--CceEEEEeCCCCHHHHcCCC
Confidence 456999999999999999999997664 38999998662100 000 11111 1 11233544444577889999
Q ss_pred CEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 86 STVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 86 D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
|+|||+||.... ..+.......|...++++.+.+++++.+++++++|-=+=+...--.......+ ...|...||.++
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s--~~p~~~viG~~~ 165 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAG--VYDPKKLFGVTT 165 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcC--CCCcceEEEEec
Confidence 999999995443 45678889999999999999999999999999988522100000000001112 345667888888
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCC-CCCcHHHH
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVFGPG-DTQLVPLL 202 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~-~~~~~~~~ 202 (467)
...+++-..++++.|++...++ +.|+|.+ +...++.|
T Consensus 166 LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeHg~~s~vp~~ 203 (323)
T PLN00106 166 LDVVRANTFVAEKKGLDPADVD-VPVVGGHAGITILPLL 203 (323)
T ss_pred chHHHHHHHHHHHhCCChhheE-EEEEEeCCCccEeeeh
Confidence 8888988888888899988886 6677766 43444443
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-09 Score=92.69 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=76.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG---- 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 84 (467)
|+++|||||||+|. +++.|.++| ++|++.+|++...... .........+..+.+|++|.+++.+++++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G-~~V~v~~R~~~~~~~l------~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~ 72 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG-FHVSVIARREVKLENV------KRESTTPESITPLPLDYHDDDALKLAIKSTIEK 72 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc-CEEEEEECCHHHHHHH------HHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 58999999999886 999999999 5999999875411000 00011134678889999999998877653
Q ss_pred ---CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC----eEEEEcCc
Q 012270 85 ---ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR----RLVYNSTA 133 (467)
Q Consensus 85 ---~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~----r~v~~SS~ 133 (467)
.|.+|+.. ++.++.++.++|++.|++ ||+++=..
T Consensus 73 ~g~id~lv~~v---------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs 113 (177)
T PRK08309 73 NGPFDLAVAWI---------------HSSAKDALSVVCRELDGSSETYRLFHVLGS 113 (177)
T ss_pred cCCCeEEEEec---------------cccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence 56777443 466789999999999998 89988644
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-09 Score=89.49 Aligned_cols=200 Identities=14% Similarity=0.084 Sum_probs=140.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.++.|++||+.--||+.++..|.+.| .+|+.+.|.+.. +.... .+.-++.+.+|+.+.+.+.+++..
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aG-A~ViAvaR~~a~----------L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~ 74 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAG-AQVIAVARNEAN----------LLSLVKETPSLIIPIVGDLSAWEALFKLLVP 74 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcC-CEEEEEecCHHH----------HHHHHhhCCcceeeeEecccHHHHHHHhhcc
Confidence 57899999999999999999999999 599999998751 11111 123388999999999998888875
Q ss_pred ---CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CC-CeEEEEcCccccccCCCCCCCCCCC
Q 012270 85 ---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KV-RRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 85 ---~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v-~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
.|..++.||... ...+.+..+++|+.+..++.+...+. ++ ..+|.+||.+.-
T Consensus 75 v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~------------- 141 (245)
T KOG1207|consen 75 VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI------------- 141 (245)
T ss_pred cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc-------------
Confidence 699999999322 23556778899999988888764432 22 359999997553
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCC---CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
.+...++.|..+|++.+.+.+..+-+. .+++..+.|..+.-...+.. |-...+++..+. .-+.--|-.
T Consensus 142 --R~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dn---WSDP~K~k~mL~----riPl~rFaE 212 (245)
T KOG1207|consen 142 --RPLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDN---WSDPDKKKKMLD----RIPLKRFAE 212 (245)
T ss_pred --cccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccc---cCCchhccchhh----hCchhhhhH
Confidence 144567899999999998877766443 48889999988865422110 111112222110 012235777
Q ss_pred hhHHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAE 239 (467)
Q Consensus 227 v~Dva~a~~~al~ 239 (467)
|+.+..|+..++.
T Consensus 213 V~eVVnA~lfLLS 225 (245)
T KOG1207|consen 213 VDEVVNAVLFLLS 225 (245)
T ss_pred HHHHHhhheeeee
Confidence 8999988887764
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-08 Score=95.68 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=78.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
||+|+|+|+ |+||+.++..|.++|..+|++.+|+......- .....++++..+.|..|.+++.+++++.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i--------~~~~~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARI--------AELIGGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHH--------HhhccccceeEEecccChHHHHHHHhcCCE
Confidence 689999999 99999999999999966999999986522111 011234899999999999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
|||++.+.. ..+++++|.+.|+ +++=+|
T Consensus 72 VIn~~p~~~---------------~~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 72 VINAAPPFV---------------DLTILKACIKTGV-DYVDTS 99 (389)
T ss_pred EEEeCCchh---------------hHHHHHHHHHhCC-CEEEcc
Confidence 999996431 2378999999998 455433
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.9e-08 Score=81.32 Aligned_cols=213 Identities=17% Similarity=0.150 Sum_probs=139.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++-..+||||..-+|...++.|.++| ..|.++|...++-.+..++ ...++.+...|+++.+++..++.
T Consensus 8 kglvalvtggasglg~ataerlakqg-asv~lldlp~skg~~vake--------lg~~~vf~padvtsekdv~aala~ak 78 (260)
T KOG1199|consen 8 KGLVALVTGGASGLGKATAERLAKQG-ASVALLDLPQSKGADVAKE--------LGGKVVFTPADVTSEKDVRAALAKAK 78 (260)
T ss_pred cCeeEEeecCcccccHHHHHHHHhcC-ceEEEEeCCcccchHHHHH--------hCCceEEeccccCcHHHHHHHHHHHH
Confidence 44568999999999999999999999 5999999877632222111 13568888999999998887765
Q ss_pred ----CCCEEEEcccCCC-------------CCCChhhHHHhhHHHHHHHHHHHHhC--------CCCe--EEEEcCcccc
Q 012270 84 ----GASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACREC--------KVRR--LVYNSTADVV 136 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------------~~~~~~~~~~~nv~g~~~ll~aa~~~--------~v~r--~v~~SS~~vy 136 (467)
..|+.+|||+... .-++.+..+++|+.||.|+++..... +=.| +|.+.|.+.|
T Consensus 79 ~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaaf 158 (260)
T KOG1199|consen 79 AKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAF 158 (260)
T ss_pred hhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeee
Confidence 3699999999321 22455678899999999998865421 1224 4444444443
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHHHH----HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce
Q 012270 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE----ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (467)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E----~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~ 212 (467)
++ .-....|+.||...- -+.+.++. .|++++.+-|+.+--|-.. .+|.-+....... +
T Consensus 159 -dg--------------q~gqaaysaskgaivgmtlpiardla~-~gir~~tiapglf~tplls-slpekv~~fla~~-i 220 (260)
T KOG1199|consen 159 -DG--------------QTGQAAYSASKGAIVGMTLPIARDLAG-DGIRFNTIAPGLFDTPLLS-SLPEKVKSFLAQL-I 220 (260)
T ss_pred -cC--------------ccchhhhhcccCceEeeechhhhhccc-CceEEEeecccccCChhhh-hhhHHHHHHHHHh-C
Confidence 11 124568888887543 33455554 6899999999876433222 1232222222221 1
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
+.+ ...-|..+.++.+-..+| ++-..|++..+.+
T Consensus 221 pfp------srlg~p~eyahlvqaiie-----np~lngevir~dg 254 (260)
T KOG1199|consen 221 PFP------SRLGHPHEYAHLVQAIIE-----NPYLNGEVIRFDG 254 (260)
T ss_pred CCc------hhcCChHHHHHHHHHHHh-----CcccCCeEEEecc
Confidence 222 234466777888888888 4667787776655
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-07 Score=89.43 Aligned_cols=180 Identities=13% Similarity=0.022 Sum_probs=103.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC------cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
+.+|+||||+|+||++++..|+..+. ++|+++|+.+......... ..+.+. ......|+....++.++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~-~Dl~d~-----~~~~~~~~~~~~~~~~~ 75 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV-MELQDC-----AFPLLKSVVATTDPEEA 75 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee-eehhhc-----cccccCCceecCCHHHH
Confidence 46899999999999999999998542 3899999965411000000 000000 00112344445567788
Q ss_pred HhCCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCC-C-CeEEEEcCccccccCCCCCCCCCCCcccCCCCC-
Q 012270 82 LEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECK-V-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ- 157 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~-v-~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~- 157 (467)
++++|+|||+||.... ..+....++.|+.-.+.+.+..+++. . ..+|.+|...-. -....-+.++..++..
T Consensus 76 l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~-----~t~~~~k~~~~~~~~~i 150 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANT-----NALILLKYAPSIPKENF 150 (325)
T ss_pred hCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHH-----HHHHHHHHcCCCCHHHE
Confidence 8999999999995543 34568899999999999988888873 2 345556642100 0000111110011111
Q ss_pred --ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHH
Q 012270 158 --DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLL 202 (467)
Q Consensus 158 --~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~ 202 (467)
..+-.+.+....+.++ .+++...++-..|+|.+....++.|
T Consensus 151 g~gt~LDs~R~r~~la~~----l~v~~~~v~~~~V~GeHG~s~~~~~ 193 (325)
T cd01336 151 TALTRLDHNRAKSQIALK----LGVPVSDVKNVIIWGNHSSTQYPDV 193 (325)
T ss_pred EeeehHHHHHHHHHHHHH----hCcChhhceEeEEEEcCCCCeeecc
Confidence 1233333333333333 5677777776778888655555543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-07 Score=80.26 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|.||+.+++.|.++| ++|.+.+|+........+. +. ........+.+|++|.+++.++++
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dl~~~~~v~~~v~~~~ 88 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEE---IT--NLGGEALFVSYDMEKQGDWQRVISITL 88 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999875411000000 11 112346678999999988877542
Q ss_pred ----CCCEEEEcccCCC----CCC-ChhhHHHhhHHHH----HHHHHHHHhC-------CCCeEEEEcCcccc
Q 012270 84 ----GASTVFYVDATDL----NTD-DFYNCYMIIVQGA----KNVVTACREC-------KVRRLVYNSTADVV 136 (467)
Q Consensus 84 ----~~D~Vih~aa~~~----~~~-~~~~~~~~nv~g~----~~ll~aa~~~-------~v~r~v~~SS~~vy 136 (467)
++|++||+||... ... ..+.....|+.++ +.+....++. +..||..+||.++-
T Consensus 89 ~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
T PRK06720 89 NAFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS 161 (169)
T ss_pred HHcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence 4899999999321 111 1111223344433 3333332222 35688888887653
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-07 Score=81.56 Aligned_cols=203 Identities=11% Similarity=0.033 Sum_probs=126.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+.+-|||||++.-||..++..+.+++. +.....+...... .+. +.-.. ........+|+.+...+.+..+
T Consensus 4 ~~r~villTGaSrgiG~~~v~~i~aed~-e~~r~g~~r~~a~--~~~---L~v~~-gd~~v~~~g~~~e~~~l~al~e~~ 76 (253)
T KOG1204|consen 4 NMRKVILLTGASRGIGTGSVATILAEDD-EALRYGVARLLAE--LEG---LKVAY-GDDFVHVVGDITEEQLLGALREAP 76 (253)
T ss_pred ccceEEEEecCCCCccHHHHHHHHhcch-HHHHHhhhccccc--ccc---eEEEe-cCCcceechHHHHHHHHHHHHhhh
Confidence 3567899999999999999999999885 4333322222100 000 00000 0222334456655554444432
Q ss_pred -----CCCEEEEcccCC----------CCCCChhhHHHhhHHHHHHHHHHHHhC--C---CCeEEEEcCccccccCCCCC
Q 012270 84 -----GASTVFYVDATD----------LNTDDFYNCYMIIVQGAKNVVTACREC--K---VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -----~~D~Vih~aa~~----------~~~~~~~~~~~~nv~g~~~ll~aa~~~--~---v~r~v~~SS~~vyg~~~~~~ 143 (467)
+-|.|||.||.. .+.+.+..+++.|......|...+... + .+-+|++||.+..-
T Consensus 77 r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~------ 150 (253)
T KOG1204|consen 77 RKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR------ 150 (253)
T ss_pred hhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc------
Confidence 259999999932 234568899999999998888876654 2 26799999987641
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEe
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFII 215 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~ 215 (467)
|...-..|+.+|++-+.+.+..+.+. ++.+..++||.+=-+... ..-|......+.-+
T Consensus 151 ---------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~----- 216 (253)
T KOG1204|consen 151 ---------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELK----- 216 (253)
T ss_pred ---------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHH-----
Confidence 33445689999999999999887443 789999999877322110 01122221111110
Q ss_pred cCCCccccccchhHHHHHHHHHHH
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
..-+.++..+.|..+..+++
T Consensus 217 ----~~~~ll~~~~~a~~l~~L~e 236 (253)
T KOG1204|consen 217 ----ESGQLLDPQVTAKVLAKLLE 236 (253)
T ss_pred ----hcCCcCChhhHHHHHHHHHH
Confidence 11256667888888888887
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.1e-07 Score=84.34 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCCEEEEEcCC----------------ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGR----------------GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGat----------------GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 70 (467)
.+|+||||+|. ||+|++|+++|+++| ++|+++++..+.. +. ..........+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G-a~V~li~g~~~~~--~~-------~~~~~~~~~~V~s 71 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG-AHVIYLHGYFAEK--PN-------DINNQLELHPFEG 71 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC-CeEEEEeCCCcCC--Cc-------ccCCceeEEEEec
Confidence 47899999886 999999999999999 5999998643210 00 0001123445666
Q ss_pred cCCCHHHHHHHHh--CCCEEEEcccCCC
Q 012270 71 DVRDISQIKKVLE--GASTVFYVDATDL 96 (467)
Q Consensus 71 Dl~d~~~l~~~~~--~~D~Vih~aa~~~ 96 (467)
|....+.+.++++ ++|+|||+||..+
T Consensus 72 ~~d~~~~l~~~~~~~~~D~VIH~AAvsD 99 (229)
T PRK09620 72 IIDLQDKMKSIITHEKVDAVIMAAAGSD 99 (229)
T ss_pred HHHHHHHHHHHhcccCCCEEEECccccc
Confidence 4444567888884 6899999999644
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-07 Score=89.42 Aligned_cols=188 Identities=11% Similarity=0.044 Sum_probs=125.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc------EEEEEcCCCCccCCCCcCCCCCCCcC-C-CCCeEEEEecCCCHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQIK 79 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~------~V~~~~r~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~Dl~d~~~l~ 79 (467)
+++|.|+|++|.||++++..|+..|.. +++++|..........+.. .+.+.. . ..++... . .| .
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~-Dl~~~~~~~~~~~~i~-~--~~----~ 73 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAM-ELEDCAFPLLAEIVIT-D--DP----N 73 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeeh-hhhhccccccCceEEe-c--Cc----H
Confidence 569999999999999999999987742 6999998554211111110 011111 0 0122221 1 12 4
Q ss_pred HHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCcc---ccccCCCCCCCCCCCcccC
Q 012270 80 KVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTAD---VVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 80 ~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~~---vyg~~~~~~~~~~E~~p~~ 153 (467)
+.++++|+||.+||... ...+....+..|+.-.+.+.+..++++. ..+|.+|... +|- -...+ + .
T Consensus 74 ~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~-------~~k~s-g-~ 144 (322)
T cd01338 74 VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI-------AMKNA-P-D 144 (322)
T ss_pred HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH-------HHHHc-C-C
Confidence 56788999999999543 2345677889999999999999988762 3566665421 110 00111 0 1
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~ 212 (467)
..+...||.++...+++...+++..|++...+|...|||++....++.|......|.++
T Consensus 145 ~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl 203 (322)
T cd01338 145 IPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPA 203 (322)
T ss_pred CChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeH
Confidence 34566899999999999999999899999999998999998666667666655666543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=81.69 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=72.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+|||+||||. |+.|++.|.++| ++|++..++... .+.....+...+..+..|.+++.+.++ ++|
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~-----------~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~ 67 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEG-----------KHLYPIHQALTVHTGALDPQELREFLKRHSID 67 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCc-----------cccccccCCceEEECCCCHHHHHHHHHhcCCC
Confidence 68999999999 999999999999 599998887751 111222234456677788888988886 489
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+||+++.+.. ...+.|..++|++.|++-+=
T Consensus 68 ~VIDAtHPfA------------~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 68 ILVDATHPFA------------AQITTNATAVCKELGIPYVR 97 (256)
T ss_pred EEEEcCCHHH------------HHHHHHHHHHHHHhCCcEEE
Confidence 9998886321 34578999999999986443
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=79.82 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=56.7
Q ss_pred cCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC--HHHHHHHHhCCCEEEEcc
Q 012270 15 NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVLEGASTVFYVD 92 (467)
Q Consensus 15 GatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~D~Vih~a 92 (467)
.+|||+|++|+++|+++| ++|++++|.... .. ....+++++.++..+ .+.+.+.+.++|+|||+|
T Consensus 23 ~SSG~iG~aLA~~L~~~G-~~V~li~r~~~~-----------~~-~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~A 89 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAG-HEVTLVTTKTAV-----------KP-EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSM 89 (229)
T ss_pred ccchHHHHHHHHHHHhCC-CEEEEEECcccc-----------cC-CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCC
Confidence 347999999999999999 599999875431 00 012356666654332 245556677899999999
Q ss_pred cCCCCCCChhhHHHhhHHHHHHHHHHHHh
Q 012270 93 ATDLNTDDFYNCYMIIVQGAKNVVTACRE 121 (467)
Q Consensus 93 a~~~~~~~~~~~~~~nv~g~~~ll~aa~~ 121 (467)
|...... ....-..+...+.++.+.+++
T Consensus 90 Avsd~~~-~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 90 AVSDYTP-VYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred ccCCcee-hhhhhhhhhhhhhhhhhhhcc
Confidence 9654211 111112233444555555543
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=81.77 Aligned_cols=167 Identities=12% Similarity=0.048 Sum_probs=111.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHH----HHHHHh
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ----IKKVLE 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----l~~~~~ 83 (467)
+...+|||||.-||++.+++|.++| ..|+++.|+.++-....++ +.+.. +-.+..+..|..+.++ +.+.+.
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG-~nvvLIsRt~~KL~~v~kE---I~~~~-~vev~~i~~Dft~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRG-FNVVLISRTQEKLEAVAKE---IEEKY-KVEVRIIAIDFTKGDEVYEKLLEKLA 123 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH---HHHHh-CcEEEEEEEecCCCchhHHHHHHHhc
Confidence 4789999999999999999999999 6999999988743222211 11111 1357788899988765 555555
Q ss_pred C--CCEEEEcccCCCCC---------CChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 G--ASTVFYVDATDLNT---------DDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ~--~D~Vih~aa~~~~~---------~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+ +.++||++|..... ........+|+.++..+.+... +.+-.-+|++||.+-. .
T Consensus 124 ~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~--~--------- 192 (312)
T KOG1014|consen 124 GLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL--I--------- 192 (312)
T ss_pred CCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc--c---------
Confidence 5 46799999943311 1124466777777655555443 3344469999997542 0
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG 194 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~ 194 (467)
|..-.+.|+.+|...+.+.+...++ +|+.+-.+-|..|-++.
T Consensus 193 ----p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 193 ----PTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred ----cChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 2233468999999777665544332 57888888887776553
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.5e-07 Score=89.26 Aligned_cols=95 Identities=29% Similarity=0.342 Sum_probs=70.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi 89 (467)
|+|.|| |++|+.+++.|.+++.. +|++.+|+...... +.......+++.++.|+.|.+++.++++++|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAER-------LAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-------HHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-------HHhhccccceeEEEEecCCHHHHHHHHhcCCEEE
Confidence 789999 99999999999999865 89999998862111 1111145689999999999999999999999999
Q ss_pred EcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 90 h~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
||+++. ....++++|.+.|+ ++|=
T Consensus 73 n~~gp~---------------~~~~v~~~~i~~g~-~yvD 96 (386)
T PF03435_consen 73 NCAGPF---------------FGEPVARACIEAGV-HYVD 96 (386)
T ss_dssp E-SSGG---------------GHHHHHHHHHHHT--EEEE
T ss_pred ECCccc---------------hhHHHHHHHHHhCC-Ceec
Confidence 999843 12468899999998 6665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8e-06 Score=79.63 Aligned_cols=116 Identities=18% Similarity=0.083 Sum_probs=79.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh-cCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLE-LGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~-~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+|+|+||+|.+|++++..|.. .+. +++++++|.+. .. ... + +....+....+.+ .+.+++.+.++++|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~--g~a---l-Dl~~~~~~~~i~~--~~~~d~~~~l~~~D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TP--GVA---V-DLSHIPTAVKIKG--FSGEDPTPALEGAD 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Cc--cee---h-hhhcCCCCceEEE--eCCCCHHHHcCCCC
Confidence 6899999999999999988854 221 48999998643 10 000 0 1011011123333 22234456678899
Q ss_pred EEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+||.++|... ...+....+..|.....++++++++++.+++|.+.|-
T Consensus 72 iVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 72 VVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 9999999543 3345677889999999999999999999988888874
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.5e-06 Score=74.44 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=114.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc----EEEEEcCCCCccCCCCcCCCCCCCcCC--CCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC----IVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~----~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~ 80 (467)
+.|.++|||++.-+|-.++.+|++..+. ++.+..|+.++......+ +..... .-+++++..|++|-.++..
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~---lk~f~p~~~i~~~yvlvD~sNm~Sv~~ 78 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAA---LKAFHPKSTIEVTYVLVDVSNMQSVFR 78 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHH---HHHhCCCceeEEEEEEEehhhHHHHHH
Confidence 3467899999999999999999998643 466677776532221111 222222 3468889999999877665
Q ss_pred H-------HhCCCEEEEcccCCC----------------------------------CCCChhhHHHhhHHHHHHHHHHH
Q 012270 81 V-------LEGASTVFYVDATDL----------------------------------NTDDFYNCYMIIVQGAKNVVTAC 119 (467)
Q Consensus 81 ~-------~~~~D~Vih~aa~~~----------------------------------~~~~~~~~~~~nv~g~~~ll~aa 119 (467)
+ ++..|.|+-.||... +.++-.++++.||.|.--++...
T Consensus 79 A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l 158 (341)
T KOG1478|consen 79 ASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIREL 158 (341)
T ss_pred HHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhh
Confidence 5 345799998888211 23445678999999987777665
Q ss_pred HhC----CCCeEEEEcCccccccCCCCCCCCC-CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc
Q 012270 120 REC----KVRRLVYNSTADVVFDGSHDIHNGD-ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF 191 (467)
Q Consensus 120 ~~~----~v~r~v~~SS~~vyg~~~~~~~~~~-E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~ 191 (467)
... ...++|.+||... ... ..+ |+. ...+...+|..||.+.+-+-.+..+. .|+.--++.||..-
T Consensus 159 ~pll~~~~~~~lvwtSS~~a---~kk---~lsleD~-q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~t 231 (341)
T KOG1478|consen 159 EPLLCHSDNPQLVWTSSRMA---RKK---NLSLEDF-QHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFT 231 (341)
T ss_pred hhHhhcCCCCeEEEEeeccc---ccc---cCCHHHH-hhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceee
Confidence 543 3458999999754 111 111 221 13456779999999988765554432 24555566666544
Q ss_pred c
Q 012270 192 G 192 (467)
Q Consensus 192 G 192 (467)
.
T Consensus 232 t 232 (341)
T KOG1478|consen 232 T 232 (341)
T ss_pred c
Confidence 3
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-05 Score=77.39 Aligned_cols=106 Identities=10% Similarity=0.092 Sum_probs=75.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc------EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH--------
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-------- 75 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-------- 75 (467)
+|.|+||+|.+|++++..|...|.. +++++|+..+.. ..+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~-----------------~~~g~~~Dl~d~~~~~~~~~ 64 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMK-----------------ALEGVVMELQDCAFPLLKGV 64 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccC-----------------ccceeeeehhhhcccccCCc
Confidence 7999999999999999999876532 599999876210 111222233222
Q ss_pred ---HHHHHHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCC-CC-eEEEEcC
Q 012270 76 ---SQIKKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNST 132 (467)
Q Consensus 76 ---~~l~~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~-r~v~~SS 132 (467)
....+.++++|+|||+||... ...+.......|+.-.+.+....+++. .+ .+|.+|.
T Consensus 65 ~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 65 VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 234678889999999999543 334567788999999999999998883 43 4555553
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.6e-05 Score=66.95 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=136.1
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCC-CeEEEEecCCCHHHHHHHH
Q 012270 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 6 ~~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~l~~~~ 82 (467)
.++|++||+|-. --|+..+++.|.++|. ++......+... ++ ..+..... ..-.+.||+.|.+++.+++
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GA-eL~fTy~~e~l~----kr---v~~la~~~~s~~v~~cDV~~d~~i~~~f 75 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGA-ELAFTYQGERLE----KR---VEELAEELGSDLVLPCDVTNDESIDALF 75 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCC-EEEEEeccHHHH----HH---HHHHHhhccCCeEEecCCCCHHHHHHHH
Confidence 368999999976 7899999999999994 777666544310 00 11111112 2346889999998888776
Q ss_pred h-------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC---C--CCeEEEEcCccccccC
Q 012270 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC---K--VRRLVYNSTADVVFDG 139 (467)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~---~--v~r~v~~SS~~vyg~~ 139 (467)
+ +.|.++|+.|... +.+++....++.......++++|+.. | +-.+-|..|..+.
T Consensus 76 ~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~v--- 152 (259)
T COG0623 76 ATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVV--- 152 (259)
T ss_pred HHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeec---
Confidence 5 4799999999322 23455667777888888888888865 2 1233444443332
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEE
Q 012270 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFI 214 (467)
Q Consensus 140 ~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~ 214 (467)
...+..|..|+..|.-++-.+.. .|+++..+-.|.|=---.. ..+..++......-|
T Consensus 153 ---------------PnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aP--- 214 (259)
T COG0623 153 ---------------PNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAP--- 214 (259)
T ss_pred ---------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCC---
Confidence 12358899999999988776533 4677776665432100000 123334433333322
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+.-+..+||...-+.++..+ ..+..|++.++.++-.
T Consensus 215 ------l~r~vt~eeVG~tA~fLlSdL---ssgiTGei~yVD~G~~ 251 (259)
T COG0623 215 ------LRRNVTIEEVGNTAAFLLSDL---SSGITGEIIYVDSGYH 251 (259)
T ss_pred ------ccCCCCHHHhhhhHHHHhcch---hcccccceEEEcCCce
Confidence 233455778877777666544 3568899999988743
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.3e-05 Score=74.83 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=76.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc------EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH-------
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS------- 76 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~------- 76 (467)
+|.|+|++|.+|++++..|...+.. +++++|+.+... ..+-...|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-----------------~a~g~~~Dl~d~~~~~~~~~ 63 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-----------------VLEGVVMELMDCAFPLLDGV 63 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-----------------ccceeEeehhcccchhcCce
Confidence 5899999999999999999975542 599999865421 0122233333322
Q ss_pred ----HHHHHHhCCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCC-C-CeEEEEcC
Q 012270 77 ----QIKKVLEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECK-V-RRLVYNST 132 (467)
Q Consensus 77 ----~l~~~~~~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~-v-~r~v~~SS 132 (467)
...+.++++|+|||+||.... ..+.......|+.-.+.+.+..+++. . ..+|.+|.
T Consensus 64 ~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 64 VPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred eccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 235678899999999996543 34578889999999999999999883 4 35565554
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-06 Score=60.60 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=26.8
Q ss_pred ceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
....|++|++++|||+|+++|+|+++++++|++++..
T Consensus 24 ~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 24 HLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp EE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred hhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 3567999999999999999999999999999988653
|
... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.9e-05 Score=75.38 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH-HHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK-VLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~ 85 (467)
++|+|.|.||||++|+.|++.|.++.+.+|+.+.+..+.. +...........+|..+.+.++. .++++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-----------~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-----------QSFGSVFPHLITQDLPNLVAVKDADFSDV 105 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-----------CCchhhCccccCccccceecCCHHHhcCC
Confidence 5679999999999999999999999556899988754411 00000011122234433322332 25789
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
|+||-+.+. ....+++.++ +.| .++|-.|+..-+
T Consensus 106 DvVf~Alp~---------------~~s~~i~~~~-~~g-~~VIDlSs~fRl 139 (381)
T PLN02968 106 DAVFCCLPH---------------GTTQEIIKAL-PKD-LKIVDLSADFRL 139 (381)
T ss_pred CEEEEcCCH---------------HHHHHHHHHH-hCC-CEEEEcCchhcc
Confidence 999976541 1455666665 345 489999998654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.1e-05 Score=70.32 Aligned_cols=79 Identities=27% Similarity=0.278 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..++++|+||+|.+|+.+++.|.+.| ++|++++|+...... +.+.. ...+.+...+|..|.+++.++++++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~~~~~~~-------l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQK-------AADSLRARFGEGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHH-------HHHHHHhhcCCcEEEeeCCCHHHHHHHHhcC
Confidence 56899999999999999999999999 499999987542110 00001 1123456678999999999999999
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+||++.+
T Consensus 99 diVi~at~ 106 (194)
T cd01078 99 DVVFAAGA 106 (194)
T ss_pred CEEEECCC
Confidence 99998765
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.7e-05 Score=74.22 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCCCEEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEE
Q 012270 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (467)
Q Consensus 6 ~~~~~ilVtGa----------------tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 69 (467)
..+++++|||| +|.+|.+++++|.++| .+|+++++.... .. ..+ ...
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G-a~V~~v~~~~~~-----------~~---~~~--~~~ 248 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG-ADVTLVSGPVNL-----------PT---PAG--VKR 248 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC-CEEEEeCCCccc-----------cC---CCC--cEE
Confidence 35789999999 8999999999999999 599999876531 00 112 345
Q ss_pred ecCCCHHHHHHHHh----CCCEEEEcccCC
Q 012270 70 VDVRDISQIKKVLE----GASTVFYVDATD 95 (467)
Q Consensus 70 ~Dl~d~~~l~~~~~----~~D~Vih~aa~~ 95 (467)
.|+++.+++.+++. ++|++||+||+.
T Consensus 249 ~dv~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 249 IDVESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred EccCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 79999888877764 589999999954
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0003 Score=69.48 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCChhHHH--HHHHHHhcCCcEEEEEcCCCCccCCCC-----cCCCCCCCcCC--CCCeEEEEecCCCHHH
Q 012270 7 IPRTCVVLNGRGFVGRS--LVLRLLELGKCIVRVTDSTQSLQLDPS-----ESNSLLPDSLS--SGRAEYHQVDVRDISQ 77 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~--lv~~Ll~~g~~~V~~~~r~~~~~~~~~-----~~~~~~~~~~~--~~~v~~~~~Dl~d~~~ 77 (467)
.+|++|||||++-+|.+ +++.| +.| ..|.++++........- .......+... ...+..+.+|+.+.++
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~G-A~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAG-ADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcC-CeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 46899999999999999 89999 999 58888875321100000 00000011111 1245678999999988
Q ss_pred HHHHHh-------CCCEEEEcccCC
Q 012270 78 IKKVLE-------GASTVFYVDATD 95 (467)
Q Consensus 78 l~~~~~-------~~D~Vih~aa~~ 95 (467)
+.++++ ++|++||++|..
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccC
Confidence 776653 489999999943
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3e-05 Score=75.72 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
..+++|+||||+|+||+.++++|.++ |...+++++|+...... +.. ++..+|+. .+.+++.+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~-------La~-------el~~~~i~---~l~~~l~~ 215 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE-------LQA-------ELGGGKIL---SLEEALPE 215 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH-------HHH-------HhccccHH---hHHHHHcc
Confidence 35689999999999999999999865 53589999987541110 010 11123433 36678889
Q ss_pred CCEEEEcccCCC
Q 012270 85 ASTVFYVDATDL 96 (467)
Q Consensus 85 ~D~Vih~aa~~~ 96 (467)
+|+|||+++...
T Consensus 216 aDiVv~~ts~~~ 227 (340)
T PRK14982 216 ADIVVWVASMPK 227 (340)
T ss_pred CCEEEECCcCCc
Confidence 999999998543
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.4e-05 Score=64.36 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=74.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCC--CeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSG--RAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|||.|+|++|.+|++++..|...+. .+++++|+..........+ +.+..... ...... .+ .+.++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D---l~~~~~~~~~~~~i~~---~~----~~~~~~a 70 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD---LSHASAPLPSPVRITS---GD----YEALKDA 70 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH---HHHHHHGSTEEEEEEE---SS----GGGGTTE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh---hhhhhhhccccccccc---cc----ccccccc
Confidence 6899999999999999999999875 3899999985411100000 00100111 122222 23 2346689
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEc
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~S 131 (467)
|+||-+|+... ...+....++.|..-.+.+.+..++.+.+ .++.+|
T Consensus 71 Divvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 71 DIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred cEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 99999999543 33556778899999999999999988754 344443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00041 Score=68.47 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=60.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
||+|+|.||||++|+.|++.|.+++|. +++.+.+..+. .+.+...+.+....|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~-----------g~~l~~~g~~i~v~d~~~~-----~~~~v 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSA-----------GKELSFKGKELKVEDLTTF-----DFSGV 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccC-----------CCeeeeCCceeEEeeCCHH-----HHcCC
Confidence 579999999999999999999998752 56777665431 0111112234555566542 24689
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|+||-+++. .-+..++....+.|+ ++|=.|+.
T Consensus 65 DvVf~A~g~---------------g~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 65 DIALFSAGG---------------SVSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred CEEEECCCh---------------HHHHHHHHHHHhCCC-EEEECCch
Confidence 999977652 123445555656676 56656665
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0002 Score=66.43 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=69.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
|+++|.|+ |-+|+++++.|.++|| +|+++++++...... .........+.+|-+|++.|+++ ++.+|+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~---------~~~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-NVVLIDRDEERVEEF---------LADELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHH---------hhhhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 68889987 9999999999999995 999999987622110 01124688899999999999988 788999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
|+-+.+.+ .+|... ..-++++.|++++|-
T Consensus 70 vva~t~~d----------~~N~i~---~~la~~~~gv~~via 98 (225)
T COG0569 70 VVAATGND----------EVNSVL---ALLALKEFGVPRVIA 98 (225)
T ss_pred EEEeeCCC----------HHHHHH---HHHHHHhcCCCcEEE
Confidence 99554422 333322 222444578877663
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.4e-05 Score=72.32 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=70.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh----cCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLE----LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~----~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
-.++|.||+||-|..+++++++ .| ...-+..|++.+-....+....... ...+...++.+|..|++++.+..+.
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~KL~~vL~~~~~k~~-~~ls~~~i~i~D~~n~~Sl~emak~ 83 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKKLQEVLEKVGEKTG-TDLSSSVILIADSANEASLDEMAKQ 83 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHHHHHHHHHHhhccC-CCcccceEEEecCCCHHHHHHHHhh
Confidence 3689999999999999999999 56 4788888887532111111000000 0112233888999999999999999
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCC
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v 124 (467)
+-+|+||+|+-..- -.++++||.+.|.
T Consensus 84 ~~vivN~vGPyR~h-------------GE~VVkacienG~ 110 (423)
T KOG2733|consen 84 ARVIVNCVGPYRFH-------------GEPVVKACIENGT 110 (423)
T ss_pred hEEEEeccccceec-------------CcHHHHHHHHcCC
Confidence 99999999954211 1367888888886
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00045 Score=67.87 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+|++|.|+||||++|+.|++.|.+++|. +++.+....+ ..+.....+. ..++.+.+.. .+++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~-----------aG~~l~~~~~---~l~~~~~~~~--~~~~ 66 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSES-----------AGHSVPFAGK---NLRVREVDSF--DFSQ 66 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECccc-----------CCCeeccCCc---ceEEeeCChH--HhcC
Confidence 4589999999999999999999987752 4455544322 0111111121 2333322211 1468
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
+|+||-+... .-...+++.+.+.|+ ++|=.|+..
T Consensus 67 vD~vFla~p~---------------~~s~~~v~~~~~~G~-~VIDlS~~f 100 (336)
T PRK05671 67 VQLAFFAAGA---------------AVSRSFAEKARAAGC-SVIDLSGAL 100 (336)
T ss_pred CCEEEEcCCH---------------HHHHHHHHHHHHCCC-eEEECchhh
Confidence 9999966541 112347777777787 567666653
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=62.65 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=74.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCC--CeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSG--RAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|+|++|++|..++..|+..|+. +|+++||........... ..+.+..... ... +.+. .| . +.+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~-~dl~d~~~~~~~~~~-i~~~-~d---~-~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLR-LDIYDALAAAGIDAE-IKIS-SD---L-SDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECccccccccccc-chhhhchhccCCCcE-EEEC-CC---H-HHhCCC
Confidence 68999999999999999999999863 699999954211110000 0011111111 111 1111 12 2 348899
Q ss_pred CEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 86 STVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
|+||-+++.+... .+.....+.|..-...+++...+.+.+ ++|.+++.
T Consensus 74 DiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 74 DIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 9999999955433 334667788999999999988877533 56666664
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=54.22 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=55.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcE-EEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
||.|+||||++|+.|++.|.++.+.+ +.++.++.+........ ... ..........| .+.+ .+.++|+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~---~~~--~~~~~~~~~~~-~~~~----~~~~~Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEV---FPH--PKGFEDLSVED-ADPE----ELSDVDVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHT---TGG--GTTTEEEBEEE-TSGH----HHTTESEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehh---ccc--cccccceeEee-cchh----HhhcCCEE
Confidence 68999999999999999999976555 44455544211000000 000 00112222223 3433 33789999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|.|.. -.....+...+.+.|+ ++|=.|+.
T Consensus 71 f~a~~---------------~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 71 FLALP---------------HGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp EE-SC---------------HHHHHHHHHHHHHTTS-EEEESSST
T ss_pred EecCc---------------hhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 98864 1224556667777787 56655554
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=97.34 E-value=5.4e-05 Score=67.04 Aligned_cols=61 Identities=39% Similarity=0.598 Sum_probs=4.9
Q ss_pred ccchhccccccchhhHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCCCccccc
Q 012270 384 VADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNINSD 445 (467)
Q Consensus 384 ~ad~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (467)
+.|.++|||.+.|+.++++.+++|++|..++++++|.+|.++++++.+.+++.... ++++.
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~-~~~~~ 61 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLS-KVLSR 61 (169)
T ss_dssp ----------------------------------------------------THCC-CTCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcc
Confidence 46889999999999999999999999999999999999999999999998888873 44443
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00066 Score=75.44 Aligned_cols=99 Identities=23% Similarity=0.186 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcE-------------EEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCI-------------VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR 73 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 73 (467)
.|++|+|+|+ |++|+..++.|.+.+..+ |++.|+....... +.. ..++++.+..|+.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~-------la~--~~~~~~~v~lDv~ 637 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKE-------TVE--GIENAEAVQLDVS 637 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHH-------HHH--hcCCCceEEeecC
Confidence 5789999997 999999999998865333 7778776541100 111 1136788999999
Q ss_pred CHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 74 d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
|.+++.++++++|+||.+..... ...++++|.++|+ +++-.|
T Consensus 638 D~e~L~~~v~~~DaVIsalP~~~---------------H~~VAkaAieaGk-Hvv~ek 679 (1042)
T PLN02819 638 DSESLLKYVSQVDVVISLLPASC---------------HAVVAKACIELKK-HLVTAS 679 (1042)
T ss_pred CHHHHHHhhcCCCEEEECCCchh---------------hHHHHHHHHHcCC-CEEECc
Confidence 99999999999999998875321 1356667777765 554333
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0033 Score=62.13 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
...++|.|.||||++|+.|++.|.+++|. ++..+....+. .+.....+......++. . +.+.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-----------Gk~~~~~~~~~~v~~~~-~----~~~~ 68 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-----------GKKVTFEGRDYTVEELT-E----DSFD 68 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-----------CCeeeecCceeEEEeCC-H----HHHc
Confidence 45679999999999999999999997752 45545433220 01111122333333443 2 2346
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
++|+||-+++.. ....++..+.+.|+ ++|=.|+..
T Consensus 69 ~~D~vf~a~p~~---------------~s~~~~~~~~~~g~-~VIDlS~~f 103 (344)
T PLN02383 69 GVDIALFSAGGS---------------ISKKFGPIAVDKGA-VVVDNSSAF 103 (344)
T ss_pred CCCEEEECCCcH---------------HHHHHHHHHHhCCC-EEEECCchh
Confidence 899999766521 23345555555675 577677653
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0025 Score=61.89 Aligned_cols=116 Identities=17% Similarity=0.097 Sum_probs=77.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
|+|.|+|++|.+|++++..|...|. .++.++|.. . ....... +.+.. ......... ..+++.+.++++|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~-a~g~alD---L~~~~--~~~~i~~~~--~~~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-N-TPGVAAD---LSHIN--TPAKVTGYL--GPEELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-c-cceeehH---hHhCC--CcceEEEec--CCCchHHhcCCCCE
Confidence 5899999999999999999988874 389999986 2 1111110 11111 111222110 11224567889999
Q ss_pred EEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 88 VFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 88 Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
||-+||... ...+.....+.|..-.+.+.+..++++.+ .+|.+|-.
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 999999543 33456778899999999999999888643 45555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=63.34 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
++++|+|+||||++|+.|++.|.++.+.+++++.++.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~ 38 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE 38 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence 4689999999999999999999987755888885544
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0025 Score=62.36 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-c-----EEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-C-----IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~-----~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l 78 (467)
.+.+|.|+|++|.+|++++..|+..|. . +++++|..........+.. .+.+.. ...+... .. ..
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~-Dl~~~~~~~~~~~~i-~~------~~ 73 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAM-ELEDCAFPLLAGVVA-TT------DP 73 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHH-HHhhccccccCCcEE-ec------Ch
Confidence 456899999999999999999998874 2 6999998653110000000 011111 0112221 11 12
Q ss_pred HHHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCC-C-eEEEEcC
Q 012270 79 KKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKV-R-RLVYNST 132 (467)
Q Consensus 79 ~~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v-~-r~v~~SS 132 (467)
.+.++++|+||.+||... ...+.......|..-.+.+.+.+++++. + .++.+|-
T Consensus 74 ~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 456788999999999543 3346677889999999999999998864 3 4555543
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=63.68 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC------------------CCCCCcCCCCCeEEE
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN------------------SLLPDSLSSGRAEYH 68 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~v~~~ 68 (467)
...+|+|.|+ |.+|++++..|.+.|.-+++++|.+.-...+..++- ..+.+....-.++.+
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 4568999988 999999999999999669999998652211111110 001111112235556
Q ss_pred EecCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccccc
Q 012270 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (467)
Q Consensus 69 ~~Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~ 138 (467)
..+++ .+.+.++++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.|+...||.
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~D------n~--------~~r~~ln~~~~~~~i-P~i~~~~~g~~G~ 155 (339)
T PRK07688 102 VQDVT-AEELEELVTGVDLIIDATD------NF--------ETRFIVNDAAQKYGI-PWIYGACVGSYGL 155 (339)
T ss_pred eccCC-HHHHHHHHcCCCEEEEcCC------CH--------HHHHHHHHHHHHhCC-CEEEEeeeeeeeE
Confidence 66764 4556778899999997642 22 223356788888887 5899998877753
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0043 Score=60.84 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc------EEEEEcCCCCccCCCCcCCCCCCCcC-C-CCCeEEEEecCCCHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQI 78 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~------~V~~~~r~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~Dl~d~~~l 78 (467)
.+++|.|+|++|.+|++++..|+..|.. ++.++|..+.......+.. .+.+.. . ..++... . ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~-Dl~~~~~~~~~~~~i~-~------~~ 74 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM-ELDDCAFPLLAGVVIT-D------DP 74 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh-hhhhhhhhhcCCcEEe-c------Ch
Confidence 4679999999999999999998876542 6999998654211111100 011111 0 0122221 1 12
Q ss_pred HHHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcC
Q 012270 79 KKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNST 132 (467)
Q Consensus 79 ~~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS 132 (467)
.+.++++|+||-+||... ...+.......|..-.+.+.+..+++. -..++.+|.
T Consensus 75 y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 456788999999999543 335667788999999999999999843 346666664
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00044 Score=65.73 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+...++|-||+||.|.-++++|..+|+ +-.+..|+..+.... ....+.+.-..++-+++.+.+.+.+.+
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g~-~~aLAgRs~~kl~~l----------~~~LG~~~~~~p~~~p~~~~~~~~~~~ 73 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREGL-TAALAGRSSAKLDAL----------RASLGPEAAVFPLGVPAALEAMASRTQ 73 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcCC-chhhccCCHHHHHHH----------HHhcCccccccCCCCHHHHHHHHhcce
Confidence 456899999999999999999999995 667777766521111 111122333345555899999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCC
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v 124 (467)
+|+||+|+-... ..-|+++|..+|.
T Consensus 74 VVlncvGPyt~~-------------g~plv~aC~~~GT 98 (382)
T COG3268 74 VVLNCVGPYTRY-------------GEPLVAACAAAGT 98 (382)
T ss_pred EEEecccccccc-------------ccHHHHHHHHhCC
Confidence 999999954311 1246677777776
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00074 Score=62.75 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH-------hCCCEE
Q 012270 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL-------EGASTV 88 (467)
Q Consensus 16 atGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~-------~~~D~V 88 (467)
++|.||++++++|.++| ++|+++++... +... + ...+|+.+.++..+.+ .++|++
T Consensus 23 SSGgIG~AIA~~la~~G-a~Vvlv~~~~~-----------l~~~---~---~~~~Dv~d~~s~~~l~~~v~~~~g~iDiL 84 (227)
T TIGR02114 23 STGHLGKIITETFLSAG-HEVTLVTTKRA-----------LKPE---P---HPNLSIREIETTKDLLITLKELVQEHDIL 84 (227)
T ss_pred cccHHHHHHHHHHHHCC-CEEEEEcChhh-----------cccc---c---CCcceeecHHHHHHHHHHHHHHcCCCCEE
Confidence 47999999999999999 59998876322 1000 0 1346888876665443 358999
Q ss_pred EEcccCC
Q 012270 89 FYVDATD 95 (467)
Q Consensus 89 ih~aa~~ 95 (467)
||+||..
T Consensus 85 VnnAgv~ 91 (227)
T TIGR02114 85 IHSMAVS 91 (227)
T ss_pred EECCEec
Confidence 9999953
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=64.33 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEE-EecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH-QVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~ 85 (467)
+|++|+|+||||++|+.+++.|.+....+++.+.+..+.... +.+.. +.+..+ ..++.+.+.. ...++
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~-------l~~~~--~~~~~~~~~~~~~~~~~--~~~~v 69 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKP-------LSDVH--PHLRGLVDLVLEPLDPE--ILAGA 69 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcc-------hHHhC--cccccccCceeecCCHH--HhcCC
Confidence 468999999999999999999998754577665553221000 11000 111111 1223333322 44679
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~v 135 (467)
|+||-+... .....++.++.+.|+ ++|=.|+..-
T Consensus 70 D~Vf~alP~---------------~~~~~~v~~a~~aG~-~VID~S~~fR 103 (343)
T PRK00436 70 DVVFLALPH---------------GVSMDLAPQLLEAGV-KVIDLSADFR 103 (343)
T ss_pred CEEEECCCc---------------HHHHHHHHHHHhCCC-EEEECCcccC
Confidence 999865531 122456666666675 7887777643
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=58.51 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCCEEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGa----------------tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 70 (467)
.+++||||+| ||-.|.+|++++..+| ++|+++....+ +. .+++++.+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G-a~V~li~g~~~-----------~~---~p~~~~~i~- 65 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG-AEVTLIHGPSS-----------LP---PPPGVKVIR- 65 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEEEE-TTS------------------TTEEEEE-
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC-CEEEEEecCcc-----------cc---ccccceEEE-
Confidence 4677888765 7999999999999999 59999887643 11 134666665
Q ss_pred cCCCHHHHH----HHHhCCCEEEEcccCCCC
Q 012270 71 DVRDISQIK----KVLEGASTVFYVDATDLN 97 (467)
Q Consensus 71 Dl~d~~~l~----~~~~~~D~Vih~aa~~~~ 97 (467)
+...+++. +.+.+.|++||+||+.+.
T Consensus 66 -v~sa~em~~~~~~~~~~~Di~I~aAAVsDf 95 (185)
T PF04127_consen 66 -VESAEEMLEAVKELLPSADIIIMAAAVSDF 95 (185)
T ss_dssp --SSHHHHHHHHHHHGGGGSEEEE-SB--SE
T ss_pred -ecchhhhhhhhccccCcceeEEEecchhhe
Confidence 44554544 444568999999996553
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0019 Score=64.75 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=67.1
Q ss_pred CCCCEEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEE
Q 012270 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (467)
Q Consensus 6 ~~~~~ilVtGa----------------tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 69 (467)
..+++++|||| ||.+|..++++|.++| .+|+++.+..... .+.++ ..
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G-a~V~~~~g~~~~~--------------~~~~~--~~ 245 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG-ADVTLITGPVSLL--------------TPPGV--KS 245 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC-CEEEEeCCCCccC--------------CCCCc--EE
Confidence 45789999999 4789999999999999 5999988654310 11222 45
Q ss_pred ecCCCHHHH-HHHH----hCCCEEEEcccCCCCCCC---------hhhHHHhhHHHHHHHHHHHHhC
Q 012270 70 VDVRDISQI-KKVL----EGASTVFYVDATDLNTDD---------FYNCYMIIVQGAKNVVTACREC 122 (467)
Q Consensus 70 ~Dl~d~~~l-~~~~----~~~D~Vih~aa~~~~~~~---------~~~~~~~nv~g~~~ll~aa~~~ 122 (467)
.|+.+.+++ ++++ .++|++|++||+.+.... .......|..-+..+++..++.
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~ 312 (390)
T TIGR00521 246 IKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKI 312 (390)
T ss_pred EEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhh
Confidence 799998887 4444 358999999995432110 0112335556666677766654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0035 Score=61.90 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=57.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
+|+|.||||++|+.|++.|.+++|. ++..+.+..+ ..+.....+......|+. ...+.++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~-----------~g~~~~~~~~~~~~~~~~-----~~~~~~~D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRS-----------AGRKVTFKGKELEVNEAK-----IESFEGIDI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecccc-----------CCCeeeeCCeeEEEEeCC-----hHHhcCCCE
Confidence 5899999999999999999998863 3444445433 111111223456666774 223478999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
||-+++.. -+..++..+.+.|+ ++|=.||.
T Consensus 65 v~~a~g~~---------------~s~~~a~~~~~~G~-~VID~ss~ 94 (339)
T TIGR01296 65 ALFSAGGS---------------VSKEFAPKAAKCGA-IVIDNTSA 94 (339)
T ss_pred EEECCCHH---------------HHHHHHHHHHHCCC-EEEECCHH
Confidence 99887621 23345555556676 45555554
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0044 Score=52.57 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC-----------------cCCCCCeEEEEe
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-----------------SLSSGRAEYHQV 70 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~~~~ 70 (467)
.++|+|.|+ |-+|+.+++.|...|.-+++++|...-...+..++. .... ..+.-+++.+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~-~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQF-LYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCT-TS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeeccccccc-ccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 468999987 999999999999999768999998664322222110 0000 111233555666
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
++ +.+...+.++++|+||.+... ...-..+-+.|++.+. .+|+.++...+|
T Consensus 80 ~~-~~~~~~~~~~~~d~vi~~~d~--------------~~~~~~l~~~~~~~~~-p~i~~~~~g~~G 130 (135)
T PF00899_consen 80 KI-DEENIEELLKDYDIVIDCVDS--------------LAARLLLNEICREYGI-PFIDAGVNGFYG 130 (135)
T ss_dssp HC-SHHHHHHHHHTSSEEEEESSS--------------HHHHHHHHHHHHHTT--EEEEEEEETTEE
T ss_pred cc-ccccccccccCCCEEEEecCC--------------HHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 66 556678888999999977531 2233457778999887 688888765553
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0044 Score=61.10 Aligned_cols=114 Identities=10% Similarity=0.114 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC------------------CCCCCcCCCCCeEEE
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN------------------SLLPDSLSSGRAEYH 68 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~v~~~ 68 (467)
..++|+|.|+ |-+|+++++.|.+.|.-.++++|++.-...+..++. ..+.+....-.++.+
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 4578999997 779999999999999668999999763221111110 001111122345556
Q ss_pred EecCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 69 ~~Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
..|++ .+.+.++++++|+||.+.. +++ .-..+-++|.+.++ .+|+.+....+|
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~D------~~~--------~r~~in~~~~~~~i-p~i~~~~~g~~G 154 (338)
T PRK12475 102 VTDVT-VEELEELVKEVDLIIDATD------NFD--------TRLLINDLSQKYNI-PWIYGGCVGSYG 154 (338)
T ss_pred eccCC-HHHHHHHhcCCCEEEEcCC------CHH--------HHHHHHHHHHHcCC-CEEEEEecccEE
Confidence 67775 4567888999999997652 121 11235578888887 588888777665
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0016 Score=67.23 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=57.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
|+|+|+|+ |.+|+++++.|.+.|+ +|+++++++... .......+++.+.+|.++.+.+.++ ++++|+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-~v~vid~~~~~~----------~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-DVTVIDTDEERL----------RRLQDRLDVRTVVGNGSSPDVLREAGAEDADL 68 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-cEEEEECCHHHH----------HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCE
Confidence 58999988 9999999999999994 999999876511 1111124688999999999999888 788999
Q ss_pred EEEcc
Q 012270 88 VFYVD 92 (467)
Q Consensus 88 Vih~a 92 (467)
||-+.
T Consensus 69 vi~~~ 73 (453)
T PRK09496 69 LIAVT 73 (453)
T ss_pred EEEec
Confidence 98554
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0022 Score=63.64 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=57.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEEE-EecCC--CHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYH-QVDVR--DISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~--d~~~l~~~~~~ 84 (467)
|+|.|.||||++|+.+++.|.+....+++.+ ++..+.... +.... +.+... ..++. |.+ ++.++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~-------~~~~~--~~l~~~~~~~~~~~~~~---~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP-------VSEVH--PHLRGLVDLNLEPIDEE---EIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC-------hHHhC--ccccccCCceeecCCHH---HhhcC
Confidence 5899999999999999999998754577743 544321000 10000 111111 11122 322 33357
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~v 135 (467)
+|+||-+.... ....++..+.+.|+ ++|=.|+..=
T Consensus 69 ~DvVf~alP~~---------------~s~~~~~~~~~~G~-~VIDlS~~fR 103 (346)
T TIGR01850 69 ADVVFLALPHG---------------VSAELAPELLAAGV-KVIDLSADFR 103 (346)
T ss_pred CCEEEECCCch---------------HHHHHHHHHHhCCC-EEEeCChhhh
Confidence 99999766421 34566677767774 7888888643
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0029 Score=61.82 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCC-CCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.+++|.|+|+ |.+|+.++..|+..|.. ++.++|+..........+ +.+... ..++.... .+ .+.+++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~D---l~~~~~~~~~~~i~~---~~----~~~~~~ 73 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMD---LSHAVPFTSPTKIYA---GD----YSDCKD 73 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHH---HHhhccccCCeEEEe---CC----HHHhCC
Confidence 4679999998 99999999999988853 899999966532111111 111111 02333332 22 234689
Q ss_pred CCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEc
Q 012270 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (467)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~S 131 (467)
+|+||-+|+.+. ...+.......|..-.+.+++.+++.+.+ .++.+|
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 999999999543 23456678899999999999999887653 445444
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=57.06 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=75.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCC-eEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGR-AEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+|.|+|+ |.||+.++-.|+.++.. +++++|............ +.+...... -..+.+| .| -+.++++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D---L~~~~~~~~~~~~i~~~-~~----y~~~~~aD 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD---LSHAAAPLGSDVKITGD-GD----YEDLKGAD 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcc---hhhcchhccCceEEecC-CC----hhhhcCCC
Confidence 58999999 99999999999888654 899999984322111111 111111111 1223333 22 34577899
Q ss_pred EEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 87 TVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+|+-.||.+... .+-....+.|..-...+.+...+.+.+-++.+=|
T Consensus 72 iVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 72 IVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 999999955433 3556788999999999999999887654444433
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0074 Score=58.73 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=74.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
||.|+|++|.||++++..|...+. .+++++|+.+.. ..... +.+.. ......... +.+++.++++++|+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D---L~~~~--~~~~i~~~~--~~~~~~~~~~daDiv 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD---LSHIP--TAASVKGFS--GEEGLENALKGADVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch---hhcCC--cCceEEEec--CCCchHHHcCCCCEE
Confidence 589999999999999999988874 389999986621 11100 11211 112222101 111245678899999
Q ss_pred EEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 89 FYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 89 ih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|-+||... ...+.......|..-.+.+.+..++++.+ .+|.+|.
T Consensus 72 vitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 72 VIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999543 33456678899999999999998888643 3555554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=53.73 Aligned_cols=115 Identities=13% Similarity=0.175 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC---------C---------CCCCcCCCCCeEEE
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN---------S---------LLPDSLSSGRAEYH 68 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~---------~---------~~~~~~~~~~v~~~ 68 (467)
+..+|+|.|..| +|+++++.|...|-.+++++|.+.-...+..++. + .+.+..+.-+++.+
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 356899999877 9999999999999778999998653211111110 0 00111112234445
Q ss_pred EecCCC-HHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 69 QVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 69 ~~Dl~d-~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
..++.+ .+...+.+.++|+||.+.. + ......+-+.|++.++ .+|+.++...||
T Consensus 97 ~~~~~~~~~~~~~~~~~~dvVi~~~d------~--------~~~~~~ln~~c~~~~i-p~i~~~~~G~~G 151 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTLVIATEE------N--------YERTAKVNDVCRKHHI-PFISCATYGLIG 151 (198)
T ss_pred ecccccchhhHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 555542 3445667888999995532 1 2223346688999987 699998877765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0028 Score=61.21 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
++++++|+|| |-+|++++..|.+.|..+|++++|+..... ..++ +.+.+ ..+.+.....|+.+.+++.+.++.
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~-~a~~---l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYE-RAEQ---TAEKIKQEVPECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHH-HHHH---HHHHHhhcCCCceeEEechhhhhHHHhhhcc
Confidence 4678999999 899999999999999546999999751000 0000 11101 112345566788888888877888
Q ss_pred CCEEEEccc
Q 012270 85 ASTVFYVDA 93 (467)
Q Consensus 85 ~D~Vih~aa 93 (467)
+|+|||+-.
T Consensus 200 ~DilINaTp 208 (289)
T PRK12548 200 SDILVNATL 208 (289)
T ss_pred CCEEEEeCC
Confidence 899998765
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=57.64 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=73.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCC---CCCeEEEEecCCCHHHHHHHHhCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS---SGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+|.|.|+ |.+|+.++..|+.++. .+++++|....+....... +.+... ...+....+| .+.++++
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D---L~~~~~~~~~~~~~i~~~~-------y~~~~~a 69 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD---FHHATALTYSTNTKIRAGD-------YDDCADA 69 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH---HHhhhccCCCCCEEEEECC-------HHHhCCC
Confidence 5889998 9999999999998875 3899999865432111111 112111 1234444333 3467789
Q ss_pred CEEEEcccCCCCCC-C--hhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 86 STVFYVDATDLNTD-D--FYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 86 D~Vih~aa~~~~~~-~--~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
|+||-+||...... + -...+..|..-.+.+.+..++++.+-++.+
T Consensus 70 DivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv 117 (307)
T cd05290 70 DIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL 117 (307)
T ss_pred CEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 99999999543322 2 367789999999999999999875444333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0027 Score=53.28 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+++++++.|. | -|.+++..|.+.|+ +|+++|.++... +......++.+.+|+.+++ .+.-+++|
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~-~ViaIDi~~~aV-----------~~a~~~~~~~v~dDlf~p~--~~~y~~a~ 79 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGF-DVIVIDINEKAV-----------EKAKKLGLNAFVDDLFNPN--LEIYKNAK 79 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCC-EEEEEECCHHHH-----------HHHHHhCCeEEECcCCCCC--HHHHhcCC
Confidence 4578999986 6 78889999999995 999999988621 1112236789999999877 55667899
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
.|+-+ ..| .+....+++.|++.++.=+|..=|
T Consensus 80 liysi-------rpp-------~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 80 LIYSI-------RPP-------RDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EEEEe-------CCC-------HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 98832 222 333457899999999876665443
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0089 Score=58.32 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=74.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCC--CCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|.|+|+ |.+|+.++..|+..|. ++|.++|+........... +.+... ........ .+. +.+.++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~d---L~~~~~~~~~~~~i~~---~~~----~~l~~a 69 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALD---LEDALAFLPSPVKIKA---GDY----SDCKDA 69 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhh---HHHHhhccCCCeEEEc---CCH----HHhCCC
Confidence 47999996 9999999999999984 2899999977532111111 111110 11222222 232 235789
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||.+++.+. ...+.......|..-.+.+.+..++++.+ .++.+|.
T Consensus 70 DIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 70 DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999999543 33455678889999999999999988643 4555554
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0052 Score=51.30 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=54.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcE-EEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~-V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|||.|.|++|-+|+.+++.+.++...+ |-+++|.++...... ..+.. ...++... ++++++++.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d-----~g~~~~~~~~~~~v~-------~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKD-----VGELAGIGPLGVPVT-------DDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSB-----CHHHCTSST-SSBEB-------S-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccch-----hhhhhCcCCcccccc-------hhHHHhcccC
Confidence 689999999999999999999954345 556666653111000 00000 01122221 3567777779
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
|+||++.. ...+...++.|.++|+ ++|
T Consensus 69 DVvIDfT~---------------p~~~~~~~~~~~~~g~-~~V 95 (124)
T PF01113_consen 69 DVVIDFTN---------------PDAVYDNLEYALKHGV-PLV 95 (124)
T ss_dssp SEEEEES----------------HHHHHHHHHHHHHHT--EEE
T ss_pred CEEEEcCC---------------hHHhHHHHHHHHhCCC-CEE
Confidence 99997763 3455678888888887 444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0099 Score=58.85 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcE---EEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|++|.|.||||++|+.+++.|+++.+.. ++.+....+.. ... .+. +-.....+..|.+. +.+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~--------~~~-~f~--g~~~~v~~~~~~~~----~~~ 65 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGG--------AAP-SFG--GKEGTLQDAFDIDA----LKK 65 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCC--------ccc-ccC--CCcceEEecCChhH----hcC
Confidence 4799999999999999999777766554 66655533210 010 111 11223345555443 357
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
+|+||-+++. .-+..+...+.+.|++ .+|=.||.
T Consensus 66 ~Divf~a~~~---------------~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 66 LDIIITCQGG---------------DYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred CCEEEECCCH---------------HHHHHHHHHHHhCCCCeEEEECChH
Confidence 9999977751 1244566667677863 34444443
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.017 Score=54.30 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
+|++|+|.|||+ =|+.|++.|.+.| +.|.+..-.... . ....++..+.|-+.|.+++.+.++ +
T Consensus 1 ~~~~IlvlgGT~-egr~la~~L~~~g-~~v~~Svat~~g------------~-~~~~~~~v~~G~l~~~~~l~~~l~~~~ 65 (248)
T PRK08057 1 MMPRILLLGGTS-EARALARALAAAG-VDIVLSLAGRTG------------G-PADLPGPVRVGGFGGAEGLAAYLREEG 65 (248)
T ss_pred CCceEEEEechH-HHHHHHHHHHhCC-CeEEEEEccCCC------------C-cccCCceEEECCCCCHHHHHHHHHHCC
Confidence 467899999976 5899999999999 566654443321 1 123467788888889999999997 6
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+++||+..-+. . ..-+.|+.++|++.+++-+=
T Consensus 66 i~~VIDATHPf------A------~~is~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 66 IDLVIDATHPY------A------AQISANAAAACRALGIPYLR 97 (248)
T ss_pred CCEEEECCCcc------H------HHHHHHHHHHHHHhCCcEEE
Confidence 99999765432 2 34568899999999986443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0017 Score=63.38 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=31.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+|+|.|+| .|.+|+.++..|+++|+ +|++++|++.
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-~V~v~d~~~~ 36 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-EVRLWDADPA 36 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-eeEEEeCCHH
Confidence 46899998 69999999999999995 9999999864
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.023 Score=52.94 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CCC------------CcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLP------------DSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~~------------~~~~~~~v~~~~~ 70 (467)
...+|+|.|+ |-+|+++++.|...|..+++++|.+.-...+..++.- ... +..+.-+++.+..
T Consensus 20 ~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 4568999986 9999999999999997799999876532222222100 000 0011123455555
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
++ +.+.+.+.++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.+....+|
T Consensus 99 ~i-~~~~~~~~~~~~DvVi~~~d------~~--------~~r~~l~~~~~~~~i-p~i~~g~~g~~g 149 (228)
T cd00757 99 RL-DAENAEELIAGYDLVLDCTD------NF--------ATRYLINDACVKLGK-PLVSGAVLGFEG 149 (228)
T ss_pred ee-CHHHHHHHHhCCCEEEEcCC------CH--------HHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 55 34567788889999997753 11 122356778888886 688887765553
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=56.20 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+|+|.|+|++|.+|+.+++.+.+....+++. +++.+.... . . -..++...+++.++++++|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~----------~-~-------~~~~i~~~~dl~~ll~~~D 62 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV----------G-Q-------GALGVAITDDLEAVLADAD 62 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc----------c-c-------CCCCccccCCHHHhccCCC
Confidence 4799999999999999999888753245554 555543100 0 0 0112222334555666899
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+||+++.+. ....+++.|.+.|+ ++|
T Consensus 63 vVid~t~p~---------------~~~~~~~~al~~G~-~vv 88 (257)
T PRK00048 63 VLIDFTTPE---------------ATLENLEFALEHGK-PLV 88 (257)
T ss_pred EEEECCCHH---------------HHHHHHHHHHHcCC-CEE
Confidence 999887421 22456677777776 454
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0062 Score=61.79 Aligned_cols=180 Identities=11% Similarity=0.022 Sum_probs=100.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc---CCc---EEEEEcCCCCccCCCCcCCCCCCCcC-C-CCCeEEEEecCCCHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL---GKC---IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQI 78 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~---g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~Dl~d~~~l 78 (467)
.+-+|+||||+|.||.+|+..+.+- |.. .++++|..+.......... .+.+.. . ..++... .| +
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~am-DL~D~a~pll~~v~i~-~~--~---- 193 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVM-EVEDLAFPLLRGISVT-TD--L---- 193 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHH-HHHHhHHhhcCCcEEE-EC--C----
Confidence 4568999999999999999988762 321 4677776422110000000 000100 0 1123332 22 2
Q ss_pred HHHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCc-c---ccccCCCCCCCCCCCcc
Q 012270 79 KKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTA-D---VVFDGSHDIHNGDETLT 151 (467)
Q Consensus 79 ~~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~-~---vyg~~~~~~~~~~E~~p 151 (467)
.++++++|+||-+||.+. ...+-....+.|..-.+.+.++..+.+. .+++.+.|- . +|- .-..+|
T Consensus 194 ~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i--------~~k~ap 265 (452)
T cd05295 194 DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSI--------LIKYAP 265 (452)
T ss_pred HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHH--------HHHHcC
Confidence 467889999999999543 2345667889999999999999988865 566666541 0 110 000000
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHH
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLV 203 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~ 203 (467)
...+....|.+....-++....+++.|++...++-..|.|.+....++.+-
T Consensus 266 -giP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S 316 (452)
T cd05295 266 -SIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLS 316 (452)
T ss_pred -CCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeee
Confidence 001122222222332233333445567888888878888987665555443
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0078 Score=62.14 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 85 (467)
.+++|+|.|+ |.+|+.+++.|.+.|+ +|+++++++..... +.+ ...++..+.||.+|++.+.++ ++++
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~-------~~~--~~~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGY-SVKLIERDPERAEE-------LAE--ELPNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHHHHHH-------HHH--HCCCCeEEECCCCCHHHHHhcCCccC
Confidence 4689999998 9999999999999994 99999987752110 000 113678899999999988655 5679
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|+||-+..- + +.|.. +...|++.++++++.....
T Consensus 299 ~~vi~~~~~-----~-----~~n~~----~~~~~~~~~~~~ii~~~~~ 332 (453)
T PRK09496 299 DAFIALTND-----D-----EANIL----SSLLAKRLGAKKVIALVNR 332 (453)
T ss_pred CEEEECCCC-----c-----HHHHH----HHHHHHHhCCCeEEEEECC
Confidence 998843321 1 34443 2335566677776655443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=53.10 Aligned_cols=114 Identities=11% Similarity=0.098 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----------------CCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----------------SLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~ 70 (467)
...+|+|.|. |-+|+++++.|...|..+++++|++.-...+..++. ..+....+.-+++.+..
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 4568999985 999999999999999658999998753211111110 00011111122333444
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
++ +.+.+.+.++++|+||.+.. + ...-..+-+.|++.++ .+|+.++...+|
T Consensus 99 ~i-~~~~~~~~~~~~D~Vi~~~d------~--------~~~r~~l~~~~~~~~i-p~i~~~~~g~~G 149 (202)
T TIGR02356 99 RV-TAENLELLINNVDLVLDCTD------N--------FATRYLINDACVALGT-PLISAAVVGFGG 149 (202)
T ss_pred cC-CHHHHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEeccCeE
Confidence 44 34567778899999997653 1 1222346678888887 588888765553
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0032 Score=65.01 Aligned_cols=76 Identities=24% Similarity=0.221 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+.++++|+|+++ +|..+++.|+++| ++|++.++...... .+ ....+...++.++.+|..+ +...++|
T Consensus 4 ~~k~v~iiG~g~-~G~~~A~~l~~~G-~~V~~~d~~~~~~~--~~----~~~~l~~~~~~~~~~~~~~-----~~~~~~d 70 (450)
T PRK14106 4 KGKKVLVVGAGV-SGLALAKFLKKLG-AKVILTDEKEEDQL--KE----ALEELGELGIELVLGEYPE-----EFLEGVD 70 (450)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEEeCCchHHH--HH----HHHHHHhcCCEEEeCCcch-----hHhhcCC
Confidence 568999999977 9999999999999 59999998653111 00 0011122357778888876 2346799
Q ss_pred EEEEcccCC
Q 012270 87 TVFYVDATD 95 (467)
Q Consensus 87 ~Vih~aa~~ 95 (467)
+||+.++..
T Consensus 71 ~vv~~~g~~ 79 (450)
T PRK14106 71 LVVVSPGVP 79 (450)
T ss_pred EEEECCCCC
Confidence 999988853
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.03 Score=54.95 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC--CCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
..++|.|+|| |.+|+.++..|...|..+++++|++.......... +..... ..... +.+ -.| ++ ++++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lD---l~~~~~~~~~~~~-i~~-~~d---~~-~l~~ 73 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALD---LKHFSTLVGSNIN-ILG-TNN---YE-DIKD 73 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHH---HhhhccccCCCeE-EEe-CCC---HH-HhCC
Confidence 4579999997 99999999998888844899999976532111110 111111 11112 221 123 33 6689
Q ss_pred CCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCe-EEEEcCc
Q 012270 85 ASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r-~v~~SS~ 133 (467)
+|+||-+++.... ..+.......|..-.+.+.+.+.+...+- +|.+|..
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 9999999985432 23456677888888888888888886544 6666653
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0084 Score=58.50 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=70.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+|.|.|+ |.+|..++..|..+|. .+|.++|++.......... +.+.. ......... .|. +.++++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~d---l~~~~~~~~~~~i~~---~d~----~~l~~aD 69 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMD---LAHGTPFVKPVRIYA---GDY----ADCKGAD 69 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHH---HHccccccCCeEEee---CCH----HHhCCCC
Confidence 58999998 9999999999999984 3899999976522110000 11100 001122222 232 3478999
Q ss_pred EEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+||-+++... ...+.......|..-.+.+.+..++.+.+-++
T Consensus 70 iViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~gii 112 (308)
T cd05292 70 VVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL 112 (308)
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 9999999543 23445567788999888898888887543333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.021 Score=51.83 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC-------C---------CCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-------S---------LLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~~~ 70 (467)
+..+|+|.|+.| +|+++++.|...|-..++++|...-...+..++- + .+.+..+.-+++.+..
T Consensus 20 ~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 356899998766 9999999999999778999997653221111110 0 0111111223444444
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
.+.+ ...+.++++|+||.+.. +. ..-..+-++|++.++ .+|+.++...||
T Consensus 99 ~~~~--~~~~~~~~~dvVi~~~~------~~--------~~~~~ln~~c~~~~i-p~i~~~~~G~~G 148 (197)
T cd01492 99 DISE--KPEEFFSQFDVVVATEL------SR--------AELVKINELCRKLGV-KFYATGVHGLFG 148 (197)
T ss_pred Cccc--cHHHHHhCCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEEecCCEE
Confidence 4442 23456788999996532 11 222345678999988 588888877664
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=53.51 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CCC------------CcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLP------------DSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~~------------~~~~~~~v~~~~~ 70 (467)
...+|+|.|+ |-+|+.++..|...|--+++++|.+.-...+..++.- ... +..+.-+++.+..
T Consensus 23 ~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 3468999987 9999999999999996699999987643322222200 000 0011122333433
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
.+ +.+.+.+.++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.++...+
T Consensus 102 ~i-~~~~~~~~~~~~DlVvd~~D------~~--------~~r~~ln~~~~~~~i-p~v~~~~~g~~ 151 (240)
T TIGR02355 102 KL-DDAELAALIAEHDIVVDCTD------NV--------EVRNQLNRQCFAAKV-PLVSGAAIRME 151 (240)
T ss_pred cC-CHHHHHHHhhcCCEEEEcCC------CH--------HHHHHHHHHHHHcCC-CEEEEEecccE
Confidence 33 34557778899999997753 12 223345678888887 58887665544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0068 Score=49.75 Aligned_cols=69 Identities=25% Similarity=0.286 Sum_probs=52.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCEEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGASTVF 89 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~Vi 89 (467)
|+|.|. |-+|+.+++.|.+.+ ..|+++++++.. .+.....++..+.||.+|++.+.++ +++++.|+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~-~~vvvid~d~~~-----------~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG-IDVVVIDRDPER-----------VEELREEGVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESSHHH-----------HHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCC-CEEEEEECCcHH-----------HHHHHhcccccccccchhhhHHhhcCccccCEEE
Confidence 578877 899999999999976 589999998752 1112234588999999999999876 66789888
Q ss_pred Ecc
Q 012270 90 YVD 92 (467)
Q Consensus 90 h~a 92 (467)
-+.
T Consensus 68 ~~~ 70 (116)
T PF02254_consen 68 ILT 70 (116)
T ss_dssp EES
T ss_pred Ecc
Confidence 544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.035 Score=54.46 Aligned_cols=117 Identities=8% Similarity=0.088 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
..++|.|+|+ |.+|+.++..++..|..+|+++|+++......... +.+. .......+.. -.|. +++++
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld---~~~~~~~~~~~~~I~~--~~d~----~~l~~ 74 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALD---ISHSNVIAGSNSKVIG--TNNY----EDIAG 74 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHH---HHhhhhccCCCeEEEE--CCCH----HHhCC
Confidence 4579999995 99999999999988854799999977632110000 0001 1111222221 1232 35689
Q ss_pred CCEEEEcccCCCCC-C-----ChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 85 ASTVFYVDATDLNT-D-----DFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~-~-----~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
+|+||.+++..... . +.......|..-.+.+.+.+.+...+ .++.+|-.
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 99999999854321 1 34556777888888888888888655 67777754
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.036 Score=54.91 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=74.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCC-CCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|.|+|+ |.+|+.++..|+..+.. ++.++|...........+ +.+... .+... +.++ .|. +.++++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D---L~~~~~~~~~~~-i~~~-~dy----~~~~daD 107 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD---LQHAAAFLPRTK-ILAS-TDY----AVTAGSD 107 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH---HHhhhhcCCCCE-EEeC-CCH----HHhCCCC
Confidence 69999996 99999999999988753 899999866432111111 111111 11222 2221 122 2377899
Q ss_pred EEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+||-+||... ...+.......|+.-.+.+.+..++++.+ .+|.+|-
T Consensus 108 iVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 108 LCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999543 23345677888999999999999888643 4555553
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=56.07 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~ 40 (467)
|+++|.|.||||++|..|++.|.++.+.++..+.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~ 34 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIP 34 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 4679999999999999999999988743444443
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.35 Score=41.55 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..|++|-||.|-+|+..++.+.+++ |-|.-+|...+
T Consensus 3 agrVivYGGkGALGSacv~~Fkann-ywV~siDl~eN 38 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSEN 38 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeeccc
Confidence 3589999999999999999999999 67888877665
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.03 Score=52.23 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC-------CC----------CCCcCCCCCeEEEE
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-------SL----------LPDSLSSGRAEYHQ 69 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~-------~~----------~~~~~~~~~v~~~~ 69 (467)
...+|+|.|+ |-+|++++..|...|..+++++|.+.-...+..++. +. +....+.-.++.+.
T Consensus 26 ~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3568999987 899999999999999768999997653322111110 00 00111122344445
Q ss_pred ecCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 70 ~Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
..+ +.+.+.+.++++|+||.+.. ++ ..-..+-++|++.++ .+|+.++...||
T Consensus 105 ~~~-~~~~~~~~l~~~D~Vid~~d------~~--------~~r~~l~~~~~~~~i-p~i~g~~~g~~G 156 (231)
T PRK08328 105 GRL-SEENIDEVLKGVDVIVDCLD------NF--------ETRYLLDDYAHKKGI-PLVHGAVEGTYG 156 (231)
T ss_pred ccC-CHHHHHHHHhcCCEEEECCC------CH--------HHHHHHHHHHHHcCC-CEEEEeeccCEE
Confidence 555 44556778899999997653 11 112245568888887 588888877775
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=55.07 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=70.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC--CCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
||+|.|+|+ |.+|+.++..+...|..+|+++|+.+......... +.+... ..... +.. -.| . +.++++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~d---l~~~~~~~~~~~~-i~~-~~d---~-~~~~~a 71 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALD---IAEAAPVEGFDTK-ITG-TND---Y-EDIAGS 71 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHH---HHhhhhhcCCCcE-EEe-CCC---H-HHHCCC
Confidence 579999999 99999999999988732899999966522110000 001110 00111 111 122 2 346889
Q ss_pred CEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||.+++.+.. ..+-.....-|..-...+++...+...+ .+|.+|.
T Consensus 72 DiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999985432 2233455677888888888888777543 3565554
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.064 Score=45.85 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=68.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCC----------------CCCcCCCCCeEEEEecCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----------------LPDSLSSGRAEYHQVDVR 73 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~----------------~~~~~~~~~v~~~~~Dl~ 73 (467)
+|+|.|+ |-+|+++++.|...|..+++++|...-...+..++... +....+.-+++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5889987 99999999999999966899999765322221111000 000011122344555554
Q ss_pred CHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 74 d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
+. ...+.+.++|+||.+... ......+.++|++.++ .+|..++...+
T Consensus 80 ~~-~~~~~~~~~diVi~~~d~--------------~~~~~~l~~~~~~~~i-~~i~~~~~g~~ 126 (143)
T cd01483 80 ED-NLDDFLDGVDLVIDAIDN--------------IAVRRALNRACKELGI-PVIDAGGLGLG 126 (143)
T ss_pred hh-hHHHHhcCCCEEEECCCC--------------HHHHHHHHHHHHHcCC-CEEEEcCCCcE
Confidence 43 235677889999977641 2234567789999886 58877776543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.025 Score=51.94 Aligned_cols=114 Identities=13% Similarity=0.071 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC---------------CCCCcCCCCCeEEEEec
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---------------LLPDSLSSGRAEYHQVD 71 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~D 71 (467)
...+|+|.|+ |-+|+.+++.|.+.|..+++++|.+.-...+..++.. .+......-+++.+...
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 3568999986 9999999999999997689999987422111111100 00001112234445555
Q ss_pred CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccc
Q 012270 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVF 137 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg 137 (467)
+.+ +.+.+.++++|+||.+.- ++ ..-..+.+.|.+. ++ .+|+.+...-|+
T Consensus 106 i~~-~~~~~~~~~~DvVI~a~D------~~--------~~r~~l~~~~~~~~~~-p~I~~~~~~~~~ 156 (212)
T PRK08644 106 IDE-DNIEELFKDCDIVVEAFD------NA--------ETKAMLVETVLEHPGK-KLVAASGMAGYG 156 (212)
T ss_pred cCH-HHHHHHHcCCCEEEECCC------CH--------HHHHHHHHHHHHhCCC-CEEEeehhhccC
Confidence 544 456677889999997742 12 2223466778877 65 688876554443
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.03 Score=52.68 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----------------CCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----------------SLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~ 70 (467)
...+|+|.|+ |-+|+.+++.|...|-.+++++|.+.-...+..++. ..+.+..+.-+++.+..
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 4568999988 999999999999999668999998654222221110 00011111223444555
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
.+. .+.+.+.++++|+||.+.. ++ ..-..+-++|.+.++ .+|+.++..-+
T Consensus 110 ~i~-~~~~~~~~~~~DiVi~~~D------~~--------~~r~~ln~~~~~~~i-p~v~~~~~g~~ 159 (245)
T PRK05690 110 RLD-DDELAALIAGHDLVLDCTD------NV--------ATRNQLNRACFAAKK-PLVSGAAIRME 159 (245)
T ss_pred cCC-HHHHHHHHhcCCEEEecCC------CH--------HHHHHHHHHHHHhCC-EEEEeeeccCC
Confidence 554 4556778889999997753 22 222346678888886 57776554433
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.021 Score=55.71 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=73.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCC-CCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++|.|+|+ |.+|+.++..|+..|. .+++++|............ +.+... ......... .|.+ .++++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D---l~~~~~~~~~~~v~~~--~dy~----~~~~a 72 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD---LQHGSAFLKNPKIEAD--KDYS----VTANS 72 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH---HHHhhccCCCCEEEEC--CCHH----HhCCC
Confidence 468999996 9999999999988875 3899999866422111111 111110 011122221 2322 36789
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||-+||... ...+-...+..|..-.+.+.+..++.+.+ .++.+|.
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 99999999543 23455678899999999999999988643 4555553
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.045 Score=53.87 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcE---EEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
..++|.|.||||++|+.+++.|.++.+.. ++.+....+. .+...-.+-....-++ |++. +.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~sa-----------Gk~~~~~~~~l~v~~~-~~~~----~~ 67 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSA-----------GKTVQFKGREIIIQEA-KINS----FE 67 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccC-----------CCCeeeCCcceEEEeC-CHHH----hc
Confidence 45799999999999999999998654445 5566544320 0001001112222233 3332 35
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
++|+||-+++.. -+..+...+.+.|+ .+|=.||.
T Consensus 68 ~~Divf~a~~~~---------------~s~~~~~~~~~~G~-~VID~Ss~ 101 (347)
T PRK06728 68 GVDIAFFSAGGE---------------VSRQFVNQAVSSGA-IVIDNTSE 101 (347)
T ss_pred CCCEEEECCChH---------------HHHHHHHHHHHCCC-EEEECchh
Confidence 799999776421 23456666666675 56656665
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.046 Score=54.20 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=26.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~ 39 (467)
|+|.|+|++|++|++|++.|.+++..++..+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v 31 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKV 31 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEE
Confidence 5899999999999999999988764477666
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=53.22 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CCC------------CcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLP------------DSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~~------------~~~~~~~v~~~~~ 70 (467)
...+|+|.|+ |-+|+.++..|...|--+++++|.+.-...+..++-. ... +....-+++.+..
T Consensus 26 ~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 3568999987 8999999999999997699999987643222222200 000 0011123444444
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~v 135 (467)
.++ ++...++++++|+||.+.- ++ +...-..+-++|.+.++ .+|+.|....
T Consensus 105 ~l~-~~n~~~ll~~~DlVvD~~D------~~------~~~~r~~ln~~c~~~~i-P~V~~~~~g~ 155 (287)
T PRK08223 105 GIG-KENADAFLDGVDVYVDGLD------FF------EFDARRLVFAACQQRGI-PALTAAPLGM 155 (287)
T ss_pred ccC-ccCHHHHHhCCCEEEECCC------CC------cHHHHHHHHHHHHHcCC-CEEEEeccCC
Confidence 454 3446777889999985441 11 11223456678999987 5888765543
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.039 Score=54.26 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
..++|.|.||||++|+.|++.|.++.| .+++.+....+.. +. +. .....+.+. |+.. ..+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG---~~----~~--~~~~~~~v~--~~~~-----~~~~~ 66 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAG---ET----LR--FGGKSVTVQ--DAAE-----FDWSQ 66 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCC---ce----EE--ECCcceEEE--eCch-----hhccC
Confidence 567999999999999999999998543 3677665543200 00 00 111111111 3211 22357
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
+|+||-++.. .....++..+.+.|+ ++|=.|+..
T Consensus 67 ~Dvvf~a~p~---------------~~s~~~~~~~~~~g~-~VIDlS~~f 100 (336)
T PRK08040 67 AQLAFFVAGR---------------EASAAYAEEATNAGC-LVIDSSGLF 100 (336)
T ss_pred CCEEEECCCH---------------HHHHHHHHHHHHCCC-EEEECChHh
Confidence 9999976641 123456666666676 577666653
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.019 Score=58.34 Aligned_cols=189 Identities=12% Similarity=0.008 Sum_probs=104.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-------CC-cEEEEEcCCCCccCCCCcCCCCCCCcC-C-CCCeEEEEecCCCHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL-------GK-CIVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDIS 76 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~-------g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~Dl~d~~ 76 (467)
+.-+|.|+|++|.+|.+++..|+.. |. .++.++|+..........+ +.+.. . ..++.+.. .|
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD---L~daa~~~~~~v~i~~---~~-- 170 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME---LEDSLYPLLREVSIGI---DP-- 170 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH---HHHhhhhhcCceEEec---CC--
Confidence 3468999999999999999999987 53 2688888876532211111 11111 0 01222222 23
Q ss_pred HHHHHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHh-CCC-CeEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 77 QIKKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRE-CKV-RRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 77 ~l~~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~-~~v-~r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
.+.++++|+||-.||... ...+-....+.|+.-.+.+.+...+ ++. ..+|.+|...-.- ....-+.++.+
T Consensus 171 --ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~-----t~v~~k~sg~~ 243 (444)
T PLN00112 171 --YEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTN-----ALICLKNAPNI 243 (444)
T ss_pred --HHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHH-----HHHHHHHcCCC
Confidence 345678999999999543 3345677889999999999999999 453 2566666431000 00000001001
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~ 211 (467)
++ ...=..+....=++-...+++.+++...++-..|+|.+....++.|-..-..|.+
T Consensus 244 ~~-rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~p 300 (444)
T PLN00112 244 PA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLP 300 (444)
T ss_pred Cc-ceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCcc
Confidence 10 1100011111111111223336777777877788998766666655444444544
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.037 Score=53.77 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=72.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----------------CCCCCcCCCCCeEEEEecCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----------------SLLPDSLSSGRAEYHQVDVR 73 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~Dl~ 73 (467)
+|+|.|+ |-+|.++++.|...|-..++++|.+.-...+..++- ..+.+....-.++.+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5899987 999999999999999769999998664322222220 00000111234555667777
Q ss_pred CHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 74 d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
+.+.-.+.++++|+||.+.. |...-..+-+.|.+.++ .+|..++.+.+|
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D--------------n~~ar~~in~~c~~~~i-p~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD--------------NLAARRHVNKMCLAADV-PLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcCCEEEECCC--------------CHHHHHHHHHHHHHCCC-CEEEEecCccee
Confidence 64334567788999996642 22333456678888886 588888776654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.047 Score=52.89 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=62.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+++|.|.||||.+|+.+++.|.++..+ .+.++...++.- .+. .. .....+ .+.-|..|.. .++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG---~~~----~~-f~~~~~-~v~~~~~~~~----~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAG---KKY----IE-FGGKSI-GVPEDAADEF----VFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccC---Ccc----cc-ccCccc-cCcccccccc----ccccC
Confidence 478999999999999999999997422 355555443310 000 00 000000 1111222222 22379
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
|+||.+++.. -++.+...+.++|+ +-+|..+.| -.+++.|.-..+.++.
T Consensus 68 Divf~~ag~~---------------~s~~~~p~~~~~G~---~VIdnsSa~--------Rm~~DVPLVVPeVN~~ 116 (334)
T COG0136 68 DIVFFAAGGS---------------VSKEVEPKAAEAGC---VVIDNSSAF--------RMDPDVPLVVPEVNPE 116 (334)
T ss_pred CEEEEeCchH---------------HHHHHHHHHHHcCC---EEEeCCccc--------ccCCCCCEecCCcCHH
Confidence 9999998732 23556677788883 445555555 3455555433344443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0071 Score=51.34 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
...+++++|.|+ |-.|+.++.+|.+.|..+|++++|+..+... +.+......++.+ ++ +++.+.+.+
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~-------l~~~~~~~~~~~~--~~---~~~~~~~~~ 75 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEA-------LAEEFGGVNIEAI--PL---EDLEEALQE 75 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHH-------HHHHHTGCSEEEE--EG---GGHCHHHHT
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHH-------HHHHcCcccccee--eH---HHHHHHHhh
Confidence 346789999998 8899999999999996579999998652111 1111222234443 33 334467788
Q ss_pred CCEEEEcccCC
Q 012270 85 ASTVFYVDATD 95 (467)
Q Consensus 85 ~D~Vih~aa~~ 95 (467)
+|+||++.+..
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998744
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.05 Score=54.16 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----------------CCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----------------SLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~ 70 (467)
+..+|+|.|+ |-+|+.+++.|...|--+++++|.+.-...+..++- ..+.+..+.-+++.+..
T Consensus 27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 4568999987 999999999999999769999998763222222210 00001111223444555
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
.+. .+...+.++++|+||.+.. + ...-..+-++|.+.++ .+|+.++...+|
T Consensus 106 ~i~-~~~~~~~~~~~DvVvd~~d------~--------~~~r~~~n~~c~~~~i-p~v~~~~~g~~g 156 (355)
T PRK05597 106 RLT-WSNALDELRDADVILDGSD------N--------FDTRHLASWAAARLGI-PHVWASILGFDA 156 (355)
T ss_pred ecC-HHHHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEEecCeE
Confidence 554 4556677899999997763 1 1222235678888887 588888765553
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.025 Score=56.82 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=52.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
||+|+|.|| |.+|+.++..+.+.| ++|++++..+.. +. ... --..+.+|..|.+.+.++++.+|+
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG-~~v~~~d~~~~~---pa-------~~~---ad~~~~~~~~D~~~l~~~a~~~dv 66 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLG-YKVIVLDPDPDS---PA-------AQV---ADEVIVADYDDVAALRELAEQCDV 66 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCCCCC---ch-------hHh---CceEEecCCCCHHHHHHHHhcCCE
Confidence 578999998 899999999999999 599999886541 00 000 124566899999999999999998
Q ss_pred EE
Q 012270 88 VF 89 (467)
Q Consensus 88 Vi 89 (467)
|.
T Consensus 67 it 68 (372)
T PRK06019 67 IT 68 (372)
T ss_pred EE
Confidence 75
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.078 Score=49.56 Aligned_cols=116 Identities=18% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.+-+|.|.||.|-||+.|--.|. ..+. +..+.|-....- ....+.+-+.........-++++++++++
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~G---------VaaDlSHI~T~s~V~g~~g~~~L~~al~~ 96 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPG---------VAADLSHINTNSSVVGFTGADGLENALKG 96 (345)
T ss_pred CcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCc---------ccccccccCCCCceeccCChhHHHHHhcC
Confidence 45689999999999999987555 4431 445555432210 11111222222233455557799999999
Q ss_pred CCEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCC-CeEEEEcC
Q 012270 85 ASTVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v-~r~v~~SS 132 (467)
+|+|+-=||.+... -..+..+++|..-.+.|.+++.++-. .++.++|-
T Consensus 97 advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 97 ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred CCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 99999999955422 33466889999999999999888733 24555554
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.48 Score=45.49 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
...+|+|-|-||.+|+.+.+.+...|-..|..++.+... .. ...+.-..++.++-+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~-----------------~~----v~G~~~y~sv~dlp~~~~ 63 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGG-----------------TT----VLGLPVFDSVKEAVEETG 63 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCc-----------------ce----ecCeeccCCHHHHhhccC
Confidence 456899999999999999999999884334434333110 00 1122233344555454
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|.++-+.. ...+..+++.|.+.|++..|.+|+-
T Consensus 64 ~Dlavi~vp---------------a~~v~~~l~e~~~~Gvk~avIis~G 97 (286)
T TIGR01019 64 ANASVIFVP---------------APFAADAIFEAIDAGIELIVCITEG 97 (286)
T ss_pred CCEEEEecC---------------HHHHHHHHHHHHHCCCCEEEEECCC
Confidence 788775553 2234567788888999998888874
|
ATP citrate lyases appear to form an outgroup. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.026 Score=54.94 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=70.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC--CCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+|.|.|+ |++|..++..|+.+|+.+|+++|............ +.+... ..... +.. -.| +++ +.++|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d---~~~~~~~~~~~~~-i~~-t~d---~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALD---MYEASPVGGFDTK-VTG-TNN---YAD-TANSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHh---hhhhhhccCCCcE-EEe-cCC---HHH-hCCCC
Confidence 68999997 99999999999998843799999855421101000 000000 00111 111 022 222 57899
Q ss_pred EEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 87 TVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+||-+++.+... .+.......|..-...+++...+++.+ .+|.+|.
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999954432 234457778999899998888877532 4555554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.028 Score=56.48 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----------------CCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----------------SLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~ 70 (467)
...+|+|.|+ |-+|++++..|...|.-+++++|++.-...+..++. ..+.+....-.++.+..
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 4568999976 889999999999999668999998742211111110 00000011112334444
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
.+. .+.+.+.++++|+||++.. ++. .-..+-++|.+.++ .+|+.+....+
T Consensus 213 ~~~-~~~~~~~~~~~D~Vv~~~d------~~~--------~r~~ln~~~~~~~i-p~i~~~~~g~~ 262 (376)
T PRK08762 213 RVT-SDNVEALLQDVDVVVDGAD------NFP--------TRYLLNDACVKLGK-PLVYGAVFRFE 262 (376)
T ss_pred cCC-hHHHHHHHhCCCEEEECCC------CHH--------HHHHHHHHHHHcCC-CEEEEEeccCE
Confidence 443 3556777889999997763 111 12236678899887 68888765544
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.05 Score=54.60 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~ 42 (467)
.+++|.|.||.|.+|+.++..|.+.|+ +|++.+|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 457999999999999999999999995 99999874
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.064 Score=47.62 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=65.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC---------------CCCCcCCCCCeEEEEecCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---------------LLPDSLSSGRAEYHQVDVRD 74 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~Dl~d 74 (467)
+|+|.|+ |-+|+.+++.|.+.|..+++++|.+.-...+..++.. .+.+....-+++.+...+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 5889986 9999999999999996579999987622111111100 00011112234445555543
Q ss_pred HHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCcccc
Q 012270 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVV 136 (467)
Q Consensus 75 ~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vy 136 (467)
+.+.+.++++|+||.+.. + ...-..+.+.|.+. ++ .+|+.+...-|
T Consensus 80 -~~~~~~l~~~DlVi~~~d------~--------~~~r~~i~~~~~~~~~i-p~i~~~~~~~~ 126 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAFD------N--------AETKAMLAESLLGNKNK-PVVCASGMAGF 126 (174)
T ss_pred -hhHHHHhcCCCEEEECCC------C--------HHHHHHHHHHHHHHCCC-CEEEEehhhcc
Confidence 556778899999997742 1 11223456666666 65 57776554444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.027 Score=53.65 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=70.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcC--C-cEEEEEcCCCCccCCCCcCCCCCCCcCCCC-CeEEEEecCCCHHHHHHHHhCCC
Q 012270 11 CVVLNGRGFVGRSLVLRLLELG--K-CIVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g--~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|.|+||+|.+|..++..|+..| . .+|.++|+.+......... +.+..... ..++.. . +++.++++++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d---l~~~~~~~~~~~i~~---~--~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD---LQDAVEPLADIKVSI---T--DDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH---HHHhhhhccCcEEEE---C--CchHHHhCCCC
Confidence 5799999999999999999887 2 3899999876422111111 11111111 112211 1 12456788999
Q ss_pred EEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEc
Q 012270 87 TVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (467)
Q Consensus 87 ~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~S 131 (467)
+||-.++.... ..........|+.-.+.+.+..++...+ .++.+|
T Consensus 73 iVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 73 VVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999985432 2334557778888889999988887543 344443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.083 Score=49.70 Aligned_cols=94 Identities=26% Similarity=0.269 Sum_probs=65.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc-CCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
|+|+|.|||+ =|+.|++.|.++| + |.+-. .+.... ... ...+..+...|-+.|.+++.+.++ ++
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g-~-v~~sv~t~~g~~---------~~~-~~~~~~~v~~G~lg~~~~l~~~l~~~~i 67 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAG-Y-VIVSVATSYGGE---------LLK-PELPGLEVRVGRLGDEEGLAEFLRENGI 67 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcC-C-EEEEEEhhhhHh---------hhc-cccCCceEEECCCCCHHHHHHHHHhCCC
Confidence 7999999976 5899999999999 4 33221 111100 000 112456788888889999999986 69
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeE
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~ 127 (467)
+.||+..-+. . .+.+.|+.++|++.|++-+
T Consensus 68 ~~vIDATHPf------A------~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 68 DAVIDATHPF------A------AEISQNAIEACRELGIPYL 97 (249)
T ss_pred cEEEECCCch------H------HHHHHHHHHHHhhcCcceE
Confidence 9999765432 2 3456889999999998643
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.028 Score=54.63 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=71.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCC-CCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|.|.|+ |.+|+.++..|+..|. .+++++|+........... +.+.... .......+ .| .+.++++|+|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~D---L~~~~~~~~~~~i~~~--~~----~~~l~~aDiV 70 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALD---LSHASAFLATGTIVRG--GD----YADAADADIV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHh---HHHhccccCCCeEEEC--CC----HHHhCCCCEE
Confidence 467886 8999999999998884 3899999976532111111 1111111 11222221 22 2467899999
Q ss_pred EEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 89 FYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 89 ih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|.+++.+. ...+.......|+.-.+.+.+..++++.+ .++.+|.
T Consensus 71 Iitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 71 VITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99999543 33456677888999999999999988643 4554443
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.063 Score=53.70 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----------------CCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----------------SLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~ 70 (467)
...+|+|.|+ |-+|+.++..|...|..+++++|.+.-...+..++- ..+.+....-+++.+..
T Consensus 40 ~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 3568999987 999999999999999669999998753222222210 00001111223445555
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
.++ .+...+.++++|+||.+.. + ...-..+-++|.+.++ .+|+.+...-+|
T Consensus 119 ~i~-~~~~~~~~~~~DlVid~~D------n--------~~~r~~in~~~~~~~i-P~v~~~~~g~~G 169 (370)
T PRK05600 119 RLT-AENAVELLNGVDLVLDGSD------S--------FATKFLVADAAEITGT-PLVWGTVLRFHG 169 (370)
T ss_pred ecC-HHHHHHHHhCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEEecCEE
Confidence 554 4556778899999997763 1 2222345578888887 588887665543
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.16 Score=48.26 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC------------cC--CCCCeEEEE-ec
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD------------SL--SSGRAEYHQ-VD 71 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~------------~~--~~~~v~~~~-~D 71 (467)
...+|+|.|+ |-+|+++++.|.+.|.-+++++|.+.-...+..++.....+ .. ..|.++... -+
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 4568999987 99999999999999955899999765432222222100001 00 013333322 23
Q ss_pred CCCHHHHHHHHh-CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 72 VRDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 72 l~d~~~l~~~~~-~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
..+++...+.+. ++|+||.+... +..-..|.+.|++.++ .+|.+..+
T Consensus 108 ~i~~e~~~~ll~~~~D~VIdaiD~--------------~~~k~~L~~~c~~~~i-p~I~~gGa 155 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVIDAIDS--------------VRPKAALIAYCRRNKI-PLVTTGGA 155 (268)
T ss_pred ccChhhHHHHhcCCCCEEEEcCCC--------------HHHHHHHHHHHHHcCC-CEEEECCc
Confidence 334566666664 69999977541 2223458889999887 46655444
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.037 Score=53.96 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=52.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
|++|.|+|| |.+|+-++.+..+.| ++|++++..+.. +.. .---..+.++.+|++++.++.+++|+
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG-~~v~vLdp~~~~---PA~----------~va~~~i~~~~dD~~al~ela~~~DV 65 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLG-IKVIVLDPDADA---PAA----------QVADRVIVAAYDDPEALRELAAKCDV 65 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcC-CEEEEecCCCCC---chh----------hcccceeecCCCCHHHHHHHHhhCCE
Confidence 578999998 999999999999999 599999976651 000 01124567788899999999999998
Q ss_pred EE
Q 012270 88 VF 89 (467)
Q Consensus 88 Vi 89 (467)
|=
T Consensus 66 iT 67 (375)
T COG0026 66 IT 67 (375)
T ss_pred EE
Confidence 74
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.034 Score=55.55 Aligned_cols=116 Identities=13% Similarity=0.049 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcE------EEEE--cCCCCccCCCCcCCCCCCCcC-C-CCCeEEEEecCCCHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCI------VRVT--DSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDIS 76 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~------V~~~--~r~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~Dl~d~~ 76 (467)
++-+|.|+|++|.+|++++..|...|... ++++ |+..........+ +.+.. . ..++... . .|
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D---L~d~a~~~~~~v~i~-~--~~-- 114 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME---LEDSLYPLLREVSIG-I--DP-- 114 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH---HHHhhhhhcCceEEe-c--CC--
Confidence 35689999999999999999999887532 3334 5554421111111 11111 0 1122222 2 22
Q ss_pred HHHHHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCC-C-CeEEEEcC
Q 012270 77 QIKKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK-V-RRLVYNST 132 (467)
Q Consensus 77 ~l~~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~-v-~r~v~~SS 132 (467)
.+.++++|+||-+||.+. ...+.....+.|+.-.+.+.+...++. . .++|.+|.
T Consensus 115 --y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 115 --YEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred --HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 356778999999999543 234567788999999999999999853 3 35666664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.076 Score=53.64 Aligned_cols=114 Identities=12% Similarity=0.044 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----CCCCC--------cC--CCCC--eEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLPD--------SL--SSGR--AEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----~~~~~--------~~--~~~~--v~~~~~ 70 (467)
...+|+|.|+ |-+|+.++..|...|.-+++++|.+.-...+..++- ..... .+ ..+. ++.+..
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 3468999987 899999999999999668999997653322222210 00000 00 0133 444555
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
++. .+...+.++++|+||.+.. + ...-..+-++|.+.++ .+|+.+....+|
T Consensus 120 ~i~-~~~~~~~~~~~D~Vvd~~d------~--------~~~r~~ln~~~~~~~~-p~v~~~~~g~~G 170 (392)
T PRK07878 120 RLD-PSNAVELFSQYDLILDGTD------N--------FATRYLVNDAAVLAGK-PYVWGSIYRFEG 170 (392)
T ss_pred cCC-hhHHHHHHhcCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 554 3456778899999996652 1 2222335678888886 599888877665
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.18 Score=52.19 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=87.1
Q ss_pred CCCEEEEEcCC-ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR-GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat-GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..+-.+||||+ |-||..++..|++-| -+|++.+.+-+.....-- +..+.... ....+-++..+......++.+++
T Consensus 395 ~d~valVTGA~~gSIaa~Vv~~LL~gG-AtVI~TTS~~s~~r~efy-r~LYa~~a~~ga~LwvVpaN~~SysDVdAlIew 472 (866)
T COG4982 395 GDKVALVTGASKGSIAAAVVARLLAGG-ATVIATTSRLSEERTEFY-RSLYARHARYGAALWVVPANMGSYSDVDALIEW 472 (866)
T ss_pred ccceEEEecCCCcchHHHHHHHHHhCC-cEEEEEcccccHHHHHHH-HHHHHhhCCCCceEEEEeccccchhhHHHHHHH
Confidence 35678999998 999999999999999 488888765542110000 00011111 11224445556655555544442
Q ss_pred --------------------CCCEEEEcccCCCC----CCCh--hhHHHhhHHHHHHHHHHHHhCCCC-------eEEEE
Q 012270 84 --------------------GASTVFYVDATDLN----TDDF--YNCYMIIVQGAKNVVTACRECKVR-------RLVYN 130 (467)
Q Consensus 84 --------------------~~D~Vih~aa~~~~----~~~~--~~~~~~nv~g~~~ll~aa~~~~v~-------r~v~~ 130 (467)
..|.+|-+|++... ..++ +...++-.-...+++-..+..+.. |+|.-
T Consensus 473 Ig~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLP 552 (866)
T COG4982 473 IGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLP 552 (866)
T ss_pred hccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEec
Confidence 13788888884321 1122 223333333445555555554322 34444
Q ss_pred cCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC
Q 012270 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID 178 (467)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~ 178 (467)
.|.. ++ .......|+.+|...|..+.+++.+.
T Consensus 553 gSPN------rG----------~FGgDGaYgEsK~aldav~~RW~sEs 584 (866)
T COG4982 553 GSPN------RG----------MFGGDGAYGESKLALDAVVNRWHSES 584 (866)
T ss_pred CCCC------CC----------ccCCCcchhhHHHHHHHHHHHhhccc
Confidence 4421 11 12334689999999999999997765
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.071 Score=49.71 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~ 44 (467)
+||+|.|.|++|=.|+.+++.+.+.++. -+-+++|.++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~ 39 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS 39 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 4789999999999999999999988754 4566677654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.011 Score=51.25 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++++|+|+ |.+|+.+++.|.+.|.++|++.+|++..... +.+.. +...+..+..+.+ +.++++|
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~-------~~~~~---~~~~~~~~~~~~~---~~~~~~D 83 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKA-------LAERF---GELGIAIAYLDLE---ELLAEAD 83 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH-------HHHHH---hhcccceeecchh---hccccCC
Confidence 4689999997 9999999999999863489999987642110 00000 1111122333433 3367899
Q ss_pred EEEEcccCC
Q 012270 87 TVFYVDATD 95 (467)
Q Consensus 87 ~Vih~aa~~ 95 (467)
+||.+....
T Consensus 84 vvi~~~~~~ 92 (155)
T cd01065 84 LIINTTPVG 92 (155)
T ss_pred EEEeCcCCC
Confidence 999988743
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.045 Score=48.20 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|+|+.+.+|..+++.|.++|. +|++.+|.. +++.+.+..+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~--------------------------------~~l~~~l~~a 88 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT--------------------------------KNLKEHTKQA 88 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc--------------------------------hhHHHHHhhC
Confidence 4678999999977889999999999994 888887632 3466788889
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+||-+.+.
T Consensus 89 DiVIsat~~ 97 (168)
T cd01080 89 DIVIVAVGK 97 (168)
T ss_pred CEEEEcCCC
Confidence 999987764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.11 Score=51.28 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=55.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc---EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|.||||-+|+.+++.|.++.++ +++.+....+. .+.....+.....-++.+. ..+.++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~-----------g~~~~f~~~~~~v~~~~~~----~~~~~v 65 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLG-----------QAAPSFGGTTGTLQDAFDI----DALKAL 65 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhC-----------CCcCCCCCCcceEEcCccc----ccccCC
Confidence 57999999999999999999944334 45555443321 0111111112233344332 234689
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||-+++. .-+..+...+++.|.. .+|=.||
T Consensus 66 Divffa~g~---------------~~s~~~~p~~~~aG~~~~VIDnSS 98 (366)
T TIGR01745 66 DIIITCQGG---------------DYTNEIYPKLRESGWQGYWIDAAS 98 (366)
T ss_pred CEEEEcCCH---------------HHHHHHHHHHHhCCCCeEEEECCh
Confidence 999988862 2345677778888853 3444444
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.038 Score=52.99 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|.|++|.+|+.++..|+++|. +|++.+|.. ..+.+.++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t--------------------------------~~L~~~~~~a 203 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT--------------------------------QNLPELVKQA 203 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc--------------------------------hhHHHHhccC
Confidence 4678999999999999999999999995 999887622 1355666889
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+||++.+
T Consensus 204 DIvI~AtG 211 (283)
T PRK14192 204 DIIVGAVG 211 (283)
T ss_pred CEEEEccC
Confidence 99999986
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.2 Score=46.04 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--------------CCCCeEEEE-ecC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--------------SSGRAEYHQ-VDV 72 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~-~Dl 72 (467)
.-+|+|.|. |-+|++.+++|.+.|.-+++++|-+.--.....++-+.+.... -.|..+... -|+
T Consensus 30 ~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 457999987 8899999999999996688888865421111111111110000 124444432 356
Q ss_pred CCHHHHHHHHh-CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 73 RDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 73 ~d~~~l~~~~~-~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
-+++.+++.+. ++|+||.+.- |+..=..|++.|++.+++ ++||..+-
T Consensus 109 ~t~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~ki~---vIss~Gag 156 (263)
T COG1179 109 ITEENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRNKIP---VISSMGAG 156 (263)
T ss_pred hCHhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHcCCC---EEeecccc
Confidence 66777777776 4999997652 344456799999999773 66777664
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.098 Score=48.72 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=70.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----CCC------------CCcCCCCCeEEEEecCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLL------------PDSLSSGRAEYHQVDVR 73 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----~~~------------~~~~~~~~v~~~~~Dl~ 73 (467)
+|+|.|+ |-+|..+++.|...|--+++++|.+.-......++- ... .+....-+++.+..++.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 5889985 999999999999999668999998653222222210 000 01111233556667775
Q ss_pred CHHHH-HHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 74 DISQI-KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 74 d~~~l-~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
+.+.+ .+.++++|+||.+.. |...-..+-+.|.+.++ .+|..++..-+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D--------------n~~aR~~ln~~c~~~~i-plI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD--------------NIIARRYVNGMLIFLIV-PLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEcccCCce
Confidence 54333 456788999996642 23334557778888886 588888765554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.4 Score=42.52 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
+..+|+|-|-||-+|+.+.+.|++.|...|+.++..... ..+ ..+.-..++.++-+.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~-----------------~~v----~G~~~y~sv~dlp~~~~ 65 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGG-----------------TTV----LGLPVFNTVAEAVEATG 65 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCC-----------------CeE----eCeeccCCHHHHhhccC
Confidence 456899999999999999999999873245455544100 001 122223344555454
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|.++-+.. ...+..+++.|.+.|++..|.+|+.
T Consensus 66 ~DlAvi~vp---------------~~~v~~~l~e~~~~gvk~avI~s~G 99 (291)
T PRK05678 66 ANASVIYVP---------------PPFAADAILEAIDAGIDLIVCITEG 99 (291)
T ss_pred CCEEEEEcC---------------HHHHHHHHHHHHHCCCCEEEEECCC
Confidence 898775443 2345568888888999998888874
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.072 Score=51.43 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=51.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
-+|.|.||+||.|..|++.|.++.+.++..+..... .+..+ ..++++++|+|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------------------------~~~~~---~~~~~~~~D~v 53 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------------------------KDAAE---RAKLLNAADVA 53 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------------------------cCcCC---HhHhhcCCCEE
Confidence 379999999999999999999887545555432211 01112 23455689999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|-+... ..+..++..+.+.|+ ++|=.|+.
T Consensus 54 Flalp~---------------~~s~~~~~~~~~~g~-~VIDlSad 82 (310)
T TIGR01851 54 ILCLPD---------------DAAREAVSLVDNPNT-CIIDASTA 82 (310)
T ss_pred EECCCH---------------HHHHHHHHHHHhCCC-EEEECChH
Confidence 966531 123345555555666 57777765
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.022 Score=62.59 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=107.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEE--EecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH--QVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~Dl~d~~~l~~~~~- 83 (467)
..+..+|+||-|--|-.|+.-|+.+|...+++..|+--+..... .+-......+++.. .-|++..+.-..+++
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa----~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~ 1842 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQA----LMVRRWRRRGVQVQVSTSNITTAEGARGLIEE 1842 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHH----HHHHHHHhcCeEEEEecccchhhhhHHHHHHH
Confidence 35789999999999999999999999656666666543111000 01111223444442 235554444444444
Q ss_pred -----CCCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
-+-.|||+|++- ....+++..-+.-+.||.||=++.++. -.+-||-.||.+. |.++
T Consensus 1843 s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-GRGN--------- 1912 (2376)
T KOG1202|consen 1843 SNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-GRGN--------- 1912 (2376)
T ss_pred hhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-cCCC---------
Confidence 267899999932 233445555666777888887777765 3578999999875 3332
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i 190 (467)
...+.||.+....|+++.+-.. .|+|-+.+.=|.|
T Consensus 1913 -----~GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 -----AGQTNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred -----CcccccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 3567899999999999987544 7888887776655
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.038 Score=59.09 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=56.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D 86 (467)
.++|+|.|. |-+|+.+++.|.++|+ +++++|+++... +.....+...+.||.+|++.++++ ++++|
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~-~vvvID~d~~~v-----------~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM-RITVLERDISAV-----------NLMRKYGYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC-CEEEEECCHHHH-----------HHHHhCCCeEEEeeCCCHHHHHhcCCccCC
Confidence 467888875 9999999999999995 999999887521 112234688999999999998876 67789
Q ss_pred EEEEcc
Q 012270 87 TVFYVD 92 (467)
Q Consensus 87 ~Vih~a 92 (467)
+||-+.
T Consensus 467 ~vv~~~ 472 (601)
T PRK03659 467 AIVITC 472 (601)
T ss_pred EEEEEe
Confidence 888443
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.028 Score=54.47 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
+|++|.|.||+||.|..|++.|..+.+.++...+.+.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~ 37 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE 37 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh
Confidence 4789999999999999999999998765766665544
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.15 Score=55.23 Aligned_cols=108 Identities=13% Similarity=0.039 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCC---------------cCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD---------------SLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~ 70 (467)
...+|+|.|. | +|++++..|...|- -+++++|.+.-...+..++...... ....-+++.+..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4568999999 8 99999999999983 4899999865332222222100111 111234555666
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
.++ ++.+.++++++|+||.+.- + ...=..+-++|.+.++ .+|+.++
T Consensus 184 ~i~-~~n~~~~l~~~DlVvD~~D------~--------~~~R~~ln~~a~~~~i-P~i~~~~ 229 (722)
T PRK07877 184 GLT-EDNVDAFLDGLDVVVEECD------S--------LDVKVLLREAARARRI-PVLMATS 229 (722)
T ss_pred cCC-HHHHHHHhcCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEcC
Confidence 665 6778888999999997762 2 2222345578888887 4777775
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.22 Score=45.32 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC---CCC------------CcCCCCCeEEEEec
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLP------------DSLSSGRAEYHQVD 71 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~---~~~------------~~~~~~~v~~~~~D 71 (467)
..++|+|.|+ |-+|+.++..|.+.|..+++++|++.-......++.. ... .....-+++.+..+
T Consensus 20 ~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 20 EQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 4578999988 8899999999999996589999998321111111100 000 00111234455556
Q ss_pred CCCHHHHHHHHhCCCEEEEc
Q 012270 72 VRDISQIKKVLEGASTVFYV 91 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~ 91 (467)
++ .+.+.++++++|+||.+
T Consensus 99 i~-~~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 99 IT-EENIDKFFKDADIVCEA 117 (200)
T ss_pred CC-HhHHHHHhcCCCEEEEC
Confidence 64 46677888999999966
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.019 Score=60.94 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=54.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
.+++|.|. |-+|+++++.|.++|+ +|+++|+++... +.....+...+.||.+|++.++++ ++++|+
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~-~vvvId~d~~~~-----------~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGI-PLVVIETSRTRV-----------DELRERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCC-CEEEEECCHHHH-----------HHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 57888976 9999999999999995 999999877521 112234788999999999988866 567898
Q ss_pred EEE
Q 012270 88 VFY 90 (467)
Q Consensus 88 Vih 90 (467)
|+-
T Consensus 485 viv 487 (558)
T PRK10669 485 LLL 487 (558)
T ss_pred EEE
Confidence 773
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.24 Score=46.09 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--------------CCCC--eEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--------------SSGR--AEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--------------~~~~--v~~~~~ 70 (467)
...+|+|.|. |-+|+++++.|.+.|--+++++|.+.-...+..++........ ..|. ++.+..
T Consensus 10 ~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 4568999987 9999999999999997699999976532211111100000000 0133 333444
Q ss_pred cCCCHHHHHHHHh-CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 71 DVRDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 71 Dl~d~~~l~~~~~-~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
.+. ++...+.+. ++|+||.+.. |...-..+.+.|++.++ ++|...+.
T Consensus 89 ~i~-~~~~~~l~~~~~D~VvdaiD--------------~~~~k~~L~~~c~~~~i-p~I~s~g~ 136 (231)
T cd00755 89 FLT-PDNSEDLLGGDPDFVVDAID--------------SIRAKVALIAYCRKRKI-PVISSMGA 136 (231)
T ss_pred ecC-HhHHHHHhcCCCCEEEEcCC--------------CHHHHHHHHHHHHHhCC-CEEEEeCC
Confidence 443 445556664 5999997653 12233457889999887 46554443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.027 Score=52.03 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=31.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|+||+|.+|+.++..|.+.|| +|.+.+|++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-KIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-EEEEEEcCHH
Confidence 5899999999999999999999995 9999998764
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.055 Score=55.11 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=31.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+|+|.|.|. |++|..++..|.++|| +|+++|+++.
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~-~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK-QVIGVDINQH 37 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC-EEEEEeCCHH
Confidence 578999975 9999999999999994 9999999876
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.2 Score=46.49 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
++|+|+|.|||+= ++.|++.|...+. .+++..-... ...+..+....+.+-..+.+.+.+.++ +
T Consensus 1 ~~~~ilvlGGT~D-ar~la~~L~~~~~-~~~~ss~t~~------------g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~ 66 (257)
T COG2099 1 SMMRILLLGGTSD-ARALAKKLAAAPV-DIILSSLTGY------------GAKLAEQIGPVRVGGFLGAEGLAAFLREEG 66 (257)
T ss_pred CCceEEEEeccHH-HHHHHHHhhccCc-cEEEEEcccc------------cccchhccCCeeecCcCCHHHHHHHHHHcC
Confidence 3678999999875 7999999999984 3333332221 000111122266778889999999987 5
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+|.||...-+ +. .+-+.|.+++|++.|++-+.
T Consensus 67 i~llIDATHP------yA------a~iS~Na~~aake~gipy~r 98 (257)
T COG2099 67 IDLLIDATHP------YA------ARISQNAARAAKETGIPYLR 98 (257)
T ss_pred CCEEEECCCh------HH------HHHHHHHHHHHHHhCCcEEE
Confidence 8999955421 22 44578999999999997444
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.053 Score=55.60 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|+||+|.+|+++++.|.+.|+ +|++++|++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~ 35 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPK 35 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence 5899999999999999999999995 9999998764
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.086 Score=50.42 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.++++.|+|+.| +|+--++...+-| .+|++++++.++ ..++....+.+.+..-..|++.++++.+--|
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG-~rV~vis~~~~k----------keea~~~LGAd~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMG-MRVTVISTSSKK----------KEEAIKSLGADVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhC-cEEEEEeCCchh----------HHHHHHhcCcceeEEecCCHHHHHHHHHhhc
Confidence 678999999999 9999999999999 599999998741 1222334567776655569998888877666
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
.++|.+... +.. + ...+++.++..| ++|+++-.
T Consensus 249 g~~~~v~~~-a~~--------~---~~~~~~~lk~~G--t~V~vg~p 281 (360)
T KOG0023|consen 249 GGIDTVSNL-AEH--------A---LEPLLGLLKVNG--TLVLVGLP 281 (360)
T ss_pred Ccceeeeec-ccc--------c---hHHHHHHhhcCC--EEEEEeCc
Confidence 666665421 100 1 123556666655 78888764
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.16 Score=46.33 Aligned_cols=94 Identities=26% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|.|| |-+|..-++.|++.|. .|++++...... +.......+++++..+.... .++++
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga-~VtVvsp~~~~~---------l~~l~~~~~i~~~~~~~~~~-----dl~~~ 70 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGA-QLRVIAEELESE---------LTLLAEQGGITWLARCFDAD-----ILEGA 70 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCC-EEEEEcCCCCHH---------HHHHHHcCCEEEEeCCCCHH-----HhCCc
Confidence 35789999998 9999999999999995 999998654311 11112234788888887632 35678
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
|.||-+- + ++ ++| ..+.+.|++.++ +|++.
T Consensus 71 ~lVi~at--~----d~----~ln----~~i~~~a~~~~i--lvn~~ 100 (205)
T TIGR01470 71 FLVIAAT--D----DE----ELN----RRVAHAARARGV--PVNVV 100 (205)
T ss_pred EEEEECC--C----CH----HHH----HHHHHHHHHcCC--EEEEC
Confidence 8887322 1 11 222 357788887765 44443
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.082 Score=54.50 Aligned_cols=76 Identities=14% Similarity=0.041 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-CC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~ 85 (467)
.+++++|||++| +|.+.++.|.++| ++|.+.|+....... ....+...++++..++.. .. .+. ++
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G-~~V~~~d~~~~~~~~-------~~~~l~~~g~~~~~~~~~--~~---~~~~~~ 69 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLG-ANVTVNDGKPFSENP-------EAQELLEEGIKVICGSHP--LE---LLDEDF 69 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCC-CEEEEEcCCCccchh-------HHHHHHhcCCEEEeCCCC--HH---HhcCcC
Confidence 568999999988 9999999999999 599999876531100 001112234555444321 11 233 48
Q ss_pred CEEEEcccCCC
Q 012270 86 STVFYVDATDL 96 (467)
Q Consensus 86 D~Vih~aa~~~ 96 (467)
|.||...|...
T Consensus 70 d~vV~s~gi~~ 80 (447)
T PRK02472 70 DLMVKNPGIPY 80 (447)
T ss_pred CEEEECCCCCC
Confidence 99999998553
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.018 Score=55.33 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..+++++|+|+ |-+|+.++..|.+.|..+|++++|+..
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 35679999997 999999999999999448999999765
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.2 Score=50.59 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----CCC------------CCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLL------------PDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----~~~------------~~~~~~~~v~~~~~ 70 (467)
...+|+|.|+ |-+|+.+++.|...|--+++++|.+.-...+..++- ... .+....-+++.+..
T Consensus 37 ~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 3468999987 889999999999999668999998654322222220 000 00111123444555
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
.++. +...+.+.++|+||.+.. +++ .-..+-++|.+.++ .+|+.+...-||
T Consensus 116 ~~~~-~~~~~~~~~~D~Vvd~~d------~~~--------~r~~ln~~~~~~~~-p~v~~~~~g~~g 166 (390)
T PRK07411 116 RLSS-ENALDILAPYDVVVDGTD------NFP--------TRYLVNDACVLLNK-PNVYGSIFRFEG 166 (390)
T ss_pred ccCH-HhHHHHHhCCCEEEECCC------CHH--------HHHHHHHHHHHcCC-CEEEEEEccCEE
Confidence 5543 445677889999997753 221 22235577888876 688877765554
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.13 Score=52.10 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+++|+|||||++..+|-.+++.|.+.|+ +|++++..+.
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~ 39 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAGH-TVILADSLKY 39 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 3578999999999999999999999995 9999988653
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.1 Score=49.88 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|+|.++.+|+.++..|.++| .+|++.++.. ..+.+.++.+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g-atVtv~~s~t--------------------------------~~l~~~~~~A 202 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN-ASVTILHSRS--------------------------------KDMASYLKDA 202 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCCc--------------------------------hhHHHHHhhC
Confidence 467999999999999999999999999 5899886522 1366778889
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||...+..
T Consensus 203 DIVIsAvg~p 212 (286)
T PRK14175 203 DVIVSAVGKP 212 (286)
T ss_pred CEEEECCCCC
Confidence 9999888743
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.053 Score=53.47 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=63.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEE----Eec--CCCHHHHHHHH
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH----QVD--VRDISQIKKVL 82 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~D--l~d~~~l~~~~ 82 (467)
|+|.|.| +||+|-....-|.+.|| +|+++|..+++....... ..+ ...|+++-+ ..+ ++-....++++
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-eVv~vDid~~KV~~ln~g---~~P-I~EpgLe~ll~~~~~~gRl~fTtd~~~a~ 74 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-EVVCVDIDESKVELLNKG---ISP-IYEPGLEELLKENLASGRLRFTTDYEEAV 74 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHhCC---CCC-CcCccHHHHHHhccccCcEEEEcCHHHHH
Confidence 6899996 59999999999999996 999999987642111111 001 111222110 001 21122356778
Q ss_pred hCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
+..|++|-+.+.+...... .+..-...+++...+...+ ++|.+=|+
T Consensus 75 ~~adv~fIavgTP~~~dg~-----aDl~~V~ava~~i~~~~~~~~vvV~KST 121 (414)
T COG1004 75 KDADVVFIAVGTPPDEDGS-----ADLSYVEAVAKDIGEILDGKAVVVIKST 121 (414)
T ss_pred hcCCEEEEEcCCCCCCCCC-----ccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence 8899999888855443221 1222333344443333222 56655554
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.088 Score=56.55 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=56.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D 86 (467)
.++++|.|. |-+|+.+++.|.++| .+++++|.++... +.....+...+.||.+|++.++++ ++++|
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g-~~vvvID~d~~~v-----------~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSG-VKMTVLDHDPDHI-----------ETLRKFGMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCC-CCEEEEECCHHHH-----------HHHHhcCCeEEEEeCCCHHHHHhcCCCcCC
Confidence 468999987 999999999999999 4899999887621 112234688999999999988765 56789
Q ss_pred EEEEcc
Q 012270 87 TVFYVD 92 (467)
Q Consensus 87 ~Vih~a 92 (467)
.||-+.
T Consensus 467 ~vvv~~ 472 (621)
T PRK03562 467 VLINAI 472 (621)
T ss_pred EEEEEe
Confidence 888443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.032 Score=48.94 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
||+|.++|- |-.|+.+++.|+++| ++|++.||++.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g-~~v~~~d~~~~ 35 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAG-YEVTVYDRSPE 35 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT-TEEEEEESSHH
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcC-CeEEeeccchh
Confidence 689999986 999999999999999 59999999865
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.1 Score=50.24 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|.|.|.+|.+|+.++..|+++| ++|++.++... .+.++.+.+
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~~t~--------------------------------~l~e~~~~A 203 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHSRST--------------------------------DAKALCRQA 203 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEECCCCC--------------------------------CHHHHHhcC
Confidence 468999999999999999999999999 59999876431 245667789
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+||-+.+.
T Consensus 204 DIVIsavg~ 212 (301)
T PRK14194 204 DIVVAAVGR 212 (301)
T ss_pred CEEEEecCC
Confidence 999977773
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.14 Score=51.81 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
..|+|+|+|+ |.+|+.++..+.+.| ++|++++..+.. +.. .. .-..+..|..|.+.+.++++ +
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G-~~v~~~~~~~~~---~~~-------~~---ad~~~~~~~~d~~~l~~~~~~~~ 75 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLG-VEVIAVDRYANA---PAM-------QV---AHRSHVIDMLDGDALRAVIEREK 75 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCCC---chH-------Hh---hhheEECCCCCHHHHHHHHHHhC
Confidence 4579999986 799999999999999 589999886641 000 00 01246778899999988887 7
Q ss_pred CCEEEEc
Q 012270 85 ASTVFYV 91 (467)
Q Consensus 85 ~D~Vih~ 91 (467)
+|+|+-.
T Consensus 76 id~vi~~ 82 (395)
T PRK09288 76 PDYIVPE 82 (395)
T ss_pred CCEEEEe
Confidence 9998843
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.13 Score=52.75 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCCEEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEE
Q 012270 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (467)
Q Consensus 6 ~~~~~ilVtGa----------------tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 69 (467)
..+++||||+| ||-.|.+|++++..+|. +|+++.-... + ..+.+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA-~VtlI~Gp~~-----------~---~~p~~v~~i~ 318 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGA-EVTLISGPVD-----------L---ADPQGVKVIH 318 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCC-cEEEEeCCcC-----------C---CCCCCceEEE
Confidence 56889999987 68999999999999994 9998863222 1 1234566654
Q ss_pred ecCCCHHHHHHHHh---CCCEEEEcccCCC
Q 012270 70 VDVRDISQIKKVLE---GASTVFYVDATDL 96 (467)
Q Consensus 70 ~Dl~d~~~l~~~~~---~~D~Vih~aa~~~ 96 (467)
+...+++.+++. ..|++|++||+.+
T Consensus 319 --V~ta~eM~~av~~~~~~Di~I~aAAVaD 346 (475)
T PRK13982 319 --VESARQMLAAVEAALPADIAIFAAAVAD 346 (475)
T ss_pred --ecCHHHHHHHHHhhCCCCEEEEeccccc
Confidence 445666665554 3799999999654
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.065 Score=54.63 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=30.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|.|. |++|..++..|.+.|| +|+++|+++.
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~-~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH-EVTGVDIDQE 34 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC-eEEEEECCHH
Confidence 57999975 9999999999999995 9999999775
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.24 Score=46.98 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=27.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
=|+|.|+ |-+|+|++.+|++.|...++++|-..
T Consensus 76 yVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 76 YVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred EEEEEec-CchhHHHHHHHHHhcCceEEEechhh
Confidence 4667766 88999999999999976899988654
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.097 Score=51.41 Aligned_cols=95 Identities=12% Similarity=-0.051 Sum_probs=62.5
Q ss_pred CEEEEcccCCCCCC--ChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 86 STVFYVDATDLNTD--DFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 86 D~Vih~aa~~~~~~--~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
+.+|.+-|...... .......+..+-+..|+++.. +.+.|++|.++|...- ......+
T Consensus 205 ~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~~----------------~~s~~f~ 268 (410)
T PF08732_consen 205 KTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNNN----------------AISSMFP 268 (410)
T ss_pred hhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccCCCceEEEEEecCcc----------------hhhhhhh
Confidence 45665555332111 112222444555566777766 6789999999997431 2234568
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT 196 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~ 196 (467)
|-.+|...|+.+...-...=-..+|+|||.+.|.+..
T Consensus 269 Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 269 YFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred hhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 9999999999998875411236899999999998765
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.099 Score=51.78 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
...+++|||.||+|-+|++.++.+...|-..|+...+..... ....-+... ..|..+++-.+...+
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~------------l~k~lGAd~-vvdy~~~~~~e~~kk~ 221 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE------------LVKKLGADE-VVDYKDENVVELIKKY 221 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH------------HHHHcCCcE-eecCCCHHHHHHHHhh
Confidence 346789999999999999999999988821444444333211 111122222 357777665555444
Q ss_pred ---CCCEEEEcccCC
Q 012270 84 ---GASTVFYVDATD 95 (467)
Q Consensus 84 ---~~D~Vih~aa~~ 95 (467)
++|+|++|.+..
T Consensus 222 ~~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 222 TGKGVDVVLDCVGGS 236 (347)
T ss_pred cCCCccEEEECCCCC
Confidence 599999999843
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.0034 Score=56.38 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=27.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|.| .||+|-.++..|.+.|| +|+++|.++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-QVIGVDIDEE 34 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-EEEEE-S-HH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-EEEEEeCChH
Confidence 7899995 59999999999999995 9999998775
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.075 Score=51.25 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|+|. |.+|+.+++.|.+.| .+|++.+|++... ... ...+...+ +.+.+.+.++++
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G-~~V~v~~R~~~~~----------~~~-~~~g~~~~-----~~~~l~~~l~~a 210 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALG-ARVFVGARSSADL----------ARI-TEMGLIPF-----PLNKLEEKVAEI 210 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCC-CEEEEEeCCHHHH----------HHH-HHCCCeee-----cHHHHHHHhccC
Confidence 35689999998 889999999999999 4999999976410 000 00122211 245567788899
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+||++..
T Consensus 211 DiVint~P 218 (287)
T TIGR02853 211 DIVINTIP 218 (287)
T ss_pred CEEEECCC
Confidence 99998763
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.16 Score=49.67 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
...+++|+||+|.+|..+++.+.+.| ..|+++++++.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~~~~~ 198 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALG-ARVIAVTRSPE 198 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEeCCHH
Confidence 35689999999999999999999999 58888887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.1 Score=46.11 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=59.3
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 7 ~~~~ilVtGat---GfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
.+++|.|.|++ |-+|+.+++.|++.| + .|+.++...... .+ +.-..++.++
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~~~~i----------------~G-------~~~~~sl~~l 61 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPKAGEI----------------LG-------VKAYPSVLEI 61 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCCCCcc----------------CC-------ccccCCHHHC
Confidence 46889999998 778999999999988 5 687776543200 01 1112223333
Q ss_pred HhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
-+.+|.++-+.. ...+..+++.|.+.|++.+|.+|+.
T Consensus 62 p~~~Dlavi~vp---------------~~~~~~~l~e~~~~gv~~~vi~s~g 98 (447)
T TIGR02717 62 PDPVDLAVIVVP---------------AKYVPQVVEECGEKGVKGAVVITAG 98 (447)
T ss_pred CCCCCEEEEecC---------------HHHHHHHHHHHHhcCCCEEEEECCC
Confidence 345788774432 3345678888888999999888875
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.081 Score=54.64 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=31.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCc
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSL 45 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~ 45 (467)
||+|.|.|. |++|..++..|.+.|+ ++|+++|.++.+
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~ 38 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR 38 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 578999965 9999999999999853 489999987753
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.29 Score=47.00 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----------------CCCCCcCCCCCeEEEEec
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----------------SLLPDSLSSGRAEYHQVD 71 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~D 71 (467)
..+|||.|. |-+|..+++.|...|-..++++|...-...+..++- ..+.+..+.-+++.+..+
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 468999987 889999999999999778999998664322222110 000111111223334333
Q ss_pred CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
+ + .+.+.++|+||.+.. + ...-..+-++|++.++ .||...+...+|
T Consensus 98 ~-~----~~~l~~fdvVV~~~~------~--------~~~~~~in~~c~~~~i-pfI~a~~~G~~G 143 (286)
T cd01491 98 L-T----TDELLKFQVVVLTDA------S--------LEDQLKINEFCHSPGI-KFISADTRGLFG 143 (286)
T ss_pred C-C----HHHHhcCCEEEEecC------C--------HHHHHHHHHHHHHcCC-EEEEEeccccEE
Confidence 2 2 245678899886542 1 2223346688998887 799999887775
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.31 Score=52.65 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCC----C------------CCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----L------------PDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~----~------------~~~~~~~~v~~~~~ 70 (467)
...+|+|.|. |-+|++++..|...|--+++++|.+.-...+..++... . .+....-+++.+..
T Consensus 42 ~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 42 AEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3568999985 99999999999999966899998765332222222000 0 00111234556666
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
.++ .+.+.+.++++|+||.+.- ++ +...-..+.+.|++.+++ +|+.+
T Consensus 121 ~i~-~~n~~~~l~~~DvVid~~D------~~------~~~~r~~l~~~c~~~~iP-~i~~g 167 (679)
T PRK14851 121 GIN-ADNMDAFLDGVDVVLDGLD------FF------QFEIRRTLFNMAREKGIP-VITAG 167 (679)
T ss_pred CCC-hHHHHHHHhCCCEEEECCC------CC------cHHHHHHHHHHHHHCCCC-EEEee
Confidence 664 5567788999999996552 11 112223567789988874 66655
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.2 Score=43.67 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=42.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+|+++|.|.++.+|+.|+..|.++| ..|+..+.... .+++..+.+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~-atVt~~h~~T~--------------------------------~l~~~~~~A 80 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKG-ATVTICHSKTK--------------------------------NLQEITRRA 80 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TTSS--------------------------------SHHHHHTTS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCC-CeEEeccCCCC--------------------------------cccceeeec
Confidence 468999999999999999999999999 58888765332 356677889
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||-.+|..
T Consensus 81 DIVVsa~G~~ 90 (160)
T PF02882_consen 81 DIVVSAVGKP 90 (160)
T ss_dssp SEEEE-SSST
T ss_pred cEEeeeeccc
Confidence 9999888743
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.23 Score=48.22 Aligned_cols=112 Identities=12% Similarity=0.069 Sum_probs=66.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC--CCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|.|+|+ |.+|..++..|...|..+|+++|+++......... +.+... .....+ ... .|. +.++++|+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~d---l~~~~~~~~~~~~I-~~t-~d~----~~l~dADiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALD---ISQAAPILGSDTKV-TGT-NDY----EDIAGSDVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHH---HHHhhhhcCCCeEE-EEc-CCH----HHhCCCCEE
Confidence 468998 99999999999888722899999986521100000 011100 111121 111 222 347889999
Q ss_pred EEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 89 FYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 89 ih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|.+++.+.. ..+.......|..-.+.+++...+...+ .+|.+|.
T Consensus 71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999985432 2233445667888888888888877544 3444443
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.089 Score=51.01 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++++|+|. |-+|+.++..|.+.| .+|++++|++... +. ....+...+ +.+++.+.+.++|
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~G-a~V~v~~r~~~~~----~~-------~~~~G~~~~-----~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALG-ANVTVGARKSAHL----AR-------ITEMGLSPF-----HLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHHH----HH-------HHHcCCeee-----cHHHHHHHhCCCC
Confidence 5789999997 889999999999999 4999999986410 00 001122222 2345677888999
Q ss_pred EEEEcc
Q 012270 87 TVFYVD 92 (467)
Q Consensus 87 ~Vih~a 92 (467)
+||++.
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999975
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.12 Score=50.55 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
+.|+|.|.|+ |-+|+.++..|.+.|| +|++.+|+.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~-~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH-RVRVWSRRS 37 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 4689999966 9999999999999995 999998864
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.051 Score=53.09 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH-HHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS-QIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~l~~~~~~~ 85 (467)
++++||+.|+ ||+.+..+..|.+++.-+|++..|.... .+.....++++.+..|+.|.+ .+.+..+..
T Consensus 1 ~~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~~~----------~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~ 69 (445)
T KOG0172|consen 1 TKKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTLKD----------AEALVKGINIKAVSLDVADEELALRKEVKPL 69 (445)
T ss_pred CCcceEEecC-ccccchHHHHHhhcCCceEEEehhhHHH----------HHHHhcCCCccceEEEccchHHHHHhhhccc
Confidence 3578999976 9999999999999986688888776541 112233456899999999988 788888889
Q ss_pred CEEEEcc
Q 012270 86 STVFYVD 92 (467)
Q Consensus 86 D~Vih~a 92 (467)
|.|+-+-
T Consensus 70 D~viSLl 76 (445)
T KOG0172|consen 70 DLVISLL 76 (445)
T ss_pred ceeeeec
Confidence 9999665
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.17 Score=50.02 Aligned_cols=37 Identities=19% Similarity=0.058 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+++|+||+|-+|..+++.+...|. +|++++++..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~ 187 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDE 187 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence 457999999999999999999999994 8888877654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.58 Score=51.95 Aligned_cols=114 Identities=10% Similarity=0.025 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CCC------------CcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLP------------DSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~~------------~~~~~~~v~~~~~ 70 (467)
...+|+|.|. |-+|+.++..|...|--+++++|.+.-...+..++-. .+. +....-+++.+..
T Consensus 331 ~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 331 LRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred hcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 3568999985 8899999999999996689999876543222222200 000 0111123444444
Q ss_pred cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccc
Q 012270 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~v 135 (467)
.+ +.+.+.+.++++|+||.+.- +. ....-..+.+.|.+.++ .+|+.++..-
T Consensus 410 ~I-~~en~~~fl~~~DiVVDa~D------~~------~~~~rr~l~~~c~~~~I-P~I~ag~~G~ 460 (989)
T PRK14852 410 GV-AAETIDAFLKDVDLLVDGID------FF------ALDIRRRLFNRALELGI-PVITAGPLGY 460 (989)
T ss_pred CC-CHHHHHHHhhCCCEEEECCC------Cc------cHHHHHHHHHHHHHcCC-CEEEeecccc
Confidence 45 55677888999999996542 11 12223456778888887 5787776443
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.042 Score=49.58 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
||++. +||+|.||+.|+++|.+.|| +|.+-.|+.+
T Consensus 1 m~~~~-i~GtGniG~alA~~~a~ag~-eV~igs~r~~ 35 (211)
T COG2085 1 MMIIA-IIGTGNIGSALALRLAKAGH-EVIIGSSRGP 35 (211)
T ss_pred CcEEE-EeccChHHHHHHHHHHhCCC-eEEEecCCCh
Confidence 45555 55679999999999999995 8888866554
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.06 Score=51.95 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++|.|.|+ |.+|+.++..++..| ++|+++|+++.
T Consensus 4 ~~~~V~ViGa-G~mG~~iA~~~a~~G-~~V~l~d~~~~ 39 (286)
T PRK07819 4 AIQRVGVVGA-GQMGAGIAEVCARAG-VDVLVFETTEE 39 (286)
T ss_pred CccEEEEEcc-cHHHHHHHHHHHhCC-CEEEEEECCHH
Confidence 4568999987 999999999999999 49999999886
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.089 Score=52.70 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
...+|+|+|+ |-+|...++.|.+.|. +|++++|++.... . +.... + ..+..+..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa-~V~v~d~~~~~~~----~---l~~~~---g-~~v~~~~~~~~~l~~~l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA-TVTILDINIDRLR----Q---LDAEF---G-GRIHTRYSNAYEIEDAVKRAD 232 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC-eEEEEECCHHHHH----H---HHHhc---C-ceeEeccCCHHHHHHHHccCC
Confidence 4567999987 9999999999999995 8999998764100 0 00000 1 123345667788888999999
Q ss_pred EEEEcccC
Q 012270 87 TVFYVDAT 94 (467)
Q Consensus 87 ~Vih~aa~ 94 (467)
+||.++..
T Consensus 233 vVI~a~~~ 240 (370)
T TIGR00518 233 LLIGAVLI 240 (370)
T ss_pred EEEEcccc
Confidence 99998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.43 Score=48.53 Aligned_cols=114 Identities=10% Similarity=0.080 Sum_probs=68.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCC-----------------CCCcCCCCCeEEEEe
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-----------------LPDSLSSGRAEYHQV 70 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~ 70 (467)
..+|+|.|++| +|..+++.|+..|--.++++|...-...+.... .. +.+..+.-.++++..
T Consensus 20 ~s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~n-Ffl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e 97 (425)
T cd01493 20 SAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNN-FFLDASSLGKSRAEATCELLQELNPDVNGSAVEE 97 (425)
T ss_pred hCeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhcccc-ccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec
Confidence 45899998755 999999999999976899998764321111110 00 011111122344444
Q ss_pred cCCCH-HHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccccc
Q 012270 71 DVRDI-SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (467)
Q Consensus 71 Dl~d~-~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~ 138 (467)
++.+. +.-.+.+.++|+||-+.. + ......+.+.|.+.++ .+|+++|.+.||.
T Consensus 98 ~~~~ll~~~~~f~~~fdiVI~t~~------~--------~~~~~~L~~~c~~~~i-PlI~~~s~G~~G~ 151 (425)
T cd01493 98 SPEALLDNDPSFFSQFTVVIATNL------P--------ESTLLRLADVLWSANI-PLLYVRSYGLYGY 151 (425)
T ss_pred ccchhhhhHHHHhcCCCEEEECCC------C--------HHHHHHHHHHHHHcCC-CEEEEecccCEEE
Confidence 44331 112456778899883321 1 1222346788999887 6999999998873
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.38 Score=46.94 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|.|.|- |-||+.+++.|..-| .+|.+++|.... .+++... ...+++.++++++
T Consensus 134 l~g~tvgIvG~-G~IG~~vA~~l~afG-~~V~~~~~~~~~----------------~~~~~~~----~~~~~l~e~l~~a 191 (312)
T PRK15469 134 REDFTIGILGA-GVLGSKVAQSLQTWG-FPLRCWSRSRKS----------------WPGVQSF----AGREELSAFLSQT 191 (312)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCCC----------------CCCceee----cccccHHHHHhcC
Confidence 35689999965 999999999999999 599999985531 0111211 1345688999999
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+|+.+..
T Consensus 192 Dvvv~~lP 199 (312)
T PRK15469 192 RVLINLLP 199 (312)
T ss_pred CEEEECCC
Confidence 99987765
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.21 Score=50.30 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=50.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCCE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAST 87 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~ 87 (467)
||+|+|+ |.+|..+++.+.+.| ++|++++..+.. + .... --..+..|..|++.+.++++ ++|+
T Consensus 1 kililG~-g~~~~~l~~aa~~~G-~~v~~~d~~~~~---~-------~~~~---ad~~~~~~~~d~~~l~~~~~~~~id~ 65 (380)
T TIGR01142 1 RVLLLGS-GELGKEVAIEAQRLG-VEVIAVDRYANA---P-------AMQV---AHRSYVINMLDGDALRAVIEREKPDY 65 (380)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCCCCC---c-------hhhh---CceEEEcCCCCHHHHHHHHHHhCCCE
Confidence 5899996 999999999999999 599999887641 0 0001 11456678999999988887 6999
Q ss_pred EEEc
Q 012270 88 VFYV 91 (467)
Q Consensus 88 Vih~ 91 (467)
|+-.
T Consensus 66 v~~~ 69 (380)
T TIGR01142 66 IVPE 69 (380)
T ss_pred EEec
Confidence 8854
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.77 Score=36.31 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=59.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi 89 (467)
+|||.||..-.-..+-+.+.+.|. +.....|... +-.....+...+.++|.||
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~-~~~~hg~~~~--------------------------~~~~~~~l~~~i~~aD~VI 53 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGG-KLIHHGRDGG--------------------------DEKKASRLPSKIKKADLVI 53 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCC-EEEEEecCCC--------------------------CccchhHHHHhcCCCCEEE
Confidence 489999966666778888888884 6665522221 2223345788888999999
Q ss_pred EcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccc
Q 012270 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (467)
Q Consensus 90 h~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~v 135 (467)
-+.. -++...+..+-+.|++.++ +++|+.+.++
T Consensus 54 v~t~------------~vsH~~~~~vk~~akk~~i-p~~~~~~~~~ 86 (97)
T PF10087_consen 54 VFTD------------YVSHNAMWKVKKAAKKYGI-PIIYSRSRGV 86 (97)
T ss_pred EEeC------------CcChHHHHHHHHHHHHcCC-cEEEECCCCH
Confidence 7765 3345566778889999987 6888886544
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.4 Score=46.07 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=29.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+|+|.|+ |-+|+.+++.|...|-.+++++|.+.-
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D~V 34 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKV 34 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 5899987 899999999999999779999997653
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.43 Score=46.29 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=70.1
Q ss_pred EEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhCCCEEE
Q 012270 13 VLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (467)
Q Consensus 13 VtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi 89 (467)
|.|+ |.||++++..|+..+.. ++.++|+........... +.+.. ...++.... .| .+.++++|+||
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D---l~~~~~~~~~~~~i~~---~~----~~~~~daDivV 69 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD---LQHAASFLPTPKKIRS---GD----YSDCKDADLVV 69 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH---HHHhhcccCCCeEEec---CC----HHHHCCCCEEE
Confidence 4565 99999999999888753 799999866422111111 11111 112233322 23 35678899999
Q ss_pred EcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 90 YVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 90 h~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
-+|+.+.. ..+.......|..-.+.+.+.+++++.+ .++.+|.
T Consensus 70 itag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 70 ITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 99995432 2345678899999999999999888643 4555554
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.41 Score=46.37 Aligned_cols=92 Identities=7% Similarity=0.034 Sum_probs=55.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCC-CCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDST-QSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.++|.| ||||-+|+.+.+.|.+++.. +++++... .+ ..+...-.+-++..-++.+. .+++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s-----------~gk~i~f~g~~~~V~~l~~~-----~f~~ 65 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFG-----------EEQGIRFNNKAVEQIAPEEV-----EWAD 65 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeeccccccc-----------CCCEEEECCEEEEEEECCcc-----Cccc
Confidence 368999 99999999999999888731 55665544 21 00111111223333344332 3578
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|++|. ++. .........+.+.|+ .+|=-||.
T Consensus 66 vDia~f-ag~---------------~~s~~~ap~a~~aG~-~VIDnSsa 97 (322)
T PRK06901 66 FNYVFF-AGK---------------MAQAEHLAQAAEAGC-IVIDLYGI 97 (322)
T ss_pred CCEEEE-cCH---------------HHHHHHHHHHHHCCC-EEEECChH
Confidence 999997 652 123456667777786 45655554
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.077 Score=51.86 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
...++|+|.|+ |-+|+.+++.|.+.|...|++++|++..... +.... +.. ..+.+++.+.+.++
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~-------la~~~---g~~-----~~~~~~~~~~l~~a 239 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEE-------LAKEL---GGN-----AVPLDELLELLNEA 239 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHc---CCe-----EEeHHHHHHHHhcC
Confidence 35789999987 9999999999998765589999997642110 11111 112 22334567778889
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||.+.+..
T Consensus 240 DvVi~at~~~ 249 (311)
T cd05213 240 DVVISATGAP 249 (311)
T ss_pred CEEEECCCCC
Confidence 9999887643
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.2 Score=49.12 Aligned_cols=37 Identities=19% Similarity=0.011 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|+||+|-+|..+++.+...|. +|++++++..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~ 174 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDE 174 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence 457899999999999999999999994 8888887654
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.38 Score=39.78 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~ 39 (467)
++.|+|++|.+|..+++.|.+..+.++..+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 588999999999999999999633577766
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.28 Score=47.97 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++|.|.|+ |-+|+.++..++..| ++|+++|+++.
T Consensus 6 ~i~~VaVIGa-G~MG~giA~~~a~aG-~~V~l~D~~~~ 41 (321)
T PRK07066 6 DIKTFAAIGS-GVIGSGWVARALAHG-LDVVAWDPAPG 41 (321)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEeCCHH
Confidence 4578999987 999999999999999 59999999764
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.038 Score=54.28 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
||+|.|.|+ |.+|+.++..|.+.|+ +|++++|++.
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-~V~~~~r~~~ 35 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-DVTLWARDPE 35 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 578999986 9999999999999995 9999999764
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.26 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~ 40 (467)
..+++|+|.|-+|.+|+.++..|+++| ++|++.+
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g-~tVtv~~ 189 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAAN-ATVTIAH 189 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCC-CEEEEEC
Confidence 468999999999999999999999999 5999885
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.15 Score=46.53 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
..+++|+|.|| |-+|...++.|++.| .+|+++++..
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~g-a~V~VIs~~~ 43 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYG-AHIVVISPEL 43 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEcCCC
Confidence 46789999998 999999999999999 4999997643
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.17 Score=38.42 Aligned_cols=33 Identities=39% Similarity=0.655 Sum_probs=30.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+++|.|| |++|-.++..|.+.|. +|+++.|.+.
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~-~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGK-EVTLIERSDR 33 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhCc-EEEEEeccch
Confidence 5888987 9999999999999994 9999999876
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.21 Score=49.79 Aligned_cols=34 Identities=21% Similarity=0.081 Sum_probs=30.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDST 42 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~ 42 (467)
.++|.|.|.+|-+|+++++.|.+. | ++|+++|+.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-~~V~g~D~~ 38 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-LEVIGHDPA 38 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-CEEEEEcCC
Confidence 579999999999999999999976 6 589998874
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.85 Score=45.37 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCC-----CCC----------c--CCCCCeEEEE
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-----LPD----------S--LSSGRAEYHQ 69 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~----------~--~~~~~v~~~~ 69 (467)
...+|+|.|. |-+|++++..|.+.|--+++++|.+.-......++... +.+ . ...+++..+.
T Consensus 175 ~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred hhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 4568999987 88999999999999976999999765332222222100 001 0 0123466665
Q ss_pred ecCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 70 ~Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
..+ +++.+. .+.++|+||-|.- |..+-..+.++|.+.++. +|.++-
T Consensus 254 ~~I-~~~n~~-~L~~~DiV~dcvD--------------n~~aR~~ln~~a~~~gIP-~Id~G~ 299 (393)
T PRK06153 254 EYI-DEDNVD-ELDGFTFVFVCVD--------------KGSSRKLIVDYLEALGIP-FIDVGM 299 (393)
T ss_pred ecC-CHHHHH-HhcCCCEEEEcCC--------------CHHHHHHHHHHHHHcCCC-EEEeee
Confidence 555 555554 5788999997763 233334566788888874 665543
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.61 Score=47.05 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=52.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D 86 (467)
+.+++|.|. |-+|+.++++|.++|+ +|++++.+.. + .....+...+.||.+|++.++++ +++++
T Consensus 240 k~HvII~G~-g~lg~~v~~~L~~~g~-~vvVId~d~~------~-------~~~~~g~~vI~GD~td~e~L~~AgI~~A~ 304 (393)
T PRK10537 240 KDHFIICGH-SPLAINTYLGLRQRGQ-AVTVIVPLGL------E-------HRLPDDADLIPGDSSDSAVLKKAGAARAR 304 (393)
T ss_pred CCeEEEECC-ChHHHHHHHHHHHCCC-CEEEEECchh------h-------hhccCCCcEEEeCCCCHHHHHhcCcccCC
Confidence 356888877 8899999999999994 7888875421 0 01224577999999999998876 66789
Q ss_pred EEEEcc
Q 012270 87 TVFYVD 92 (467)
Q Consensus 87 ~Vih~a 92 (467)
+|+-+.
T Consensus 305 aVI~~t 310 (393)
T PRK10537 305 AILALR 310 (393)
T ss_pred EEEEcC
Confidence 888433
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.13 Score=53.67 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.|+|.|+|+ |.+|+.++..|++.| ++|++.|+++.
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G-~~V~v~D~~~~ 38 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAG-IDVAVFDPHPE 38 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEeCCHH
Confidence 468999965 999999999999999 59999999775
|
|
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.64 Score=42.65 Aligned_cols=179 Identities=11% Similarity=0.062 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC----c---EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEE-EEecCCCHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK----C---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY-HQVDVRDISQI 78 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~----~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~Dl~d~~~l 78 (467)
.+-||+||||+|.||.+|+..+.+ |. . ...++|..+...... +..-+ +..--+.. ...+..+ .-
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~-G~vfG~dQPiiL~lLdi~~~~~~Le----gV~mE-LqD~a~PlL~~Vvatt--d~ 74 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIAR-GIVFGKDQPIILHLLDIPPMMSVLE----GVKME-LQDCALPLLKGVVATT--DE 74 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcC-ceeecCCCceEEEeeCCchHHHHHH----HHHHH-HHhhhhhHHHhhhccc--Ch
Confidence 456999999999999999998654 41 1 122222222100000 00000 00000000 0011111 12
Q ss_pred HHHHhCCCEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 79 KKVLEGASTVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 79 ~~~~~~~D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
..+++++|+.|-.++.+..+ -......+.|+.-.+.-..+..++ ++ +++.+...+- .......+..| ..
T Consensus 75 ~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~-KVlVVgNPaN-----TNali~~k~Ap-sI 147 (332)
T KOG1496|consen 75 VEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNV-KVLVVGNPAN-----TNALILKKFAP-SI 147 (332)
T ss_pred hhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCc-eEEEecCccc-----cchhHHhhhCC-CC
Confidence 35677889999888844322 223445666766544444444443 45 4544443311 11111223332 11
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHH
Q 012270 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVP 200 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~ 200 (467)
...+.-..++..--+..-+.+.+.|+++.-+..-.|.|.+.....|
T Consensus 148 P~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyP 193 (332)
T KOG1496|consen 148 PEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYP 193 (332)
T ss_pred chhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEecccccccCC
Confidence 1223334444444455555555577888777777788876554333
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.29 Score=52.06 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++|+|+|+|| |.+|+-++..+.+.| ++|.+++.++.. +..+ . --..+.+|..|.+.+.++.+.+
T Consensus 20 ~~~k~IgIIGg-Gqlg~mla~aA~~lG-~~Vi~ld~~~~a---pa~~-------~---AD~~~v~~~~D~~~l~~~a~~~ 84 (577)
T PLN02948 20 VSETVVGVLGG-GQLGRMLCQAASQMG-IKVKVLDPLEDC---PASS-------V---AARHVVGSFDDRAAVREFAKRC 84 (577)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCCC---chhh-------h---CceeeeCCCCCHHHHHHHHHHC
Confidence 45689999998 899999999999999 599999886540 0000 0 1134568999999999888889
Q ss_pred CEEEE
Q 012270 86 STVFY 90 (467)
Q Consensus 86 D~Vih 90 (467)
|+|..
T Consensus 85 dvIt~ 89 (577)
T PLN02948 85 DVLTV 89 (577)
T ss_pred CEEEE
Confidence 98753
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.11 Score=50.73 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+.++|.|.|+ |.+|+.++..|++.|+ +|+++++++.
T Consensus 3 ~~~~I~vIGa-G~mG~~iA~~l~~~g~-~V~~~d~~~~ 38 (311)
T PRK06130 3 PIQNLAIIGA-GTMGSGIAALFARKGL-QVVLIDVMEG 38 (311)
T ss_pred CccEEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHH
Confidence 4578999977 9999999999999994 9999998764
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.38 Score=40.94 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=45.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|.|.+.-+|..++..|.++| .+|+..++... ++++.++.+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~g-atV~~~~~~t~--------------------------------~l~~~v~~A 72 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDG-ATVYSCDWKTI--------------------------------QLQSKVHDA 72 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeCCCCc--------------------------------CHHHHHhhC
Confidence 468999999999999999999999999 58988765321 345677889
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+|+-..+.
T Consensus 73 DIVvsAtg~ 81 (140)
T cd05212 73 DVVVVGSPK 81 (140)
T ss_pred CEEEEecCC
Confidence 999977663
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.06 Score=51.47 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
++++++|.|| |-.+++++..|++.|..+|++++|+..
T Consensus 125 ~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ 161 (283)
T COG0169 125 TGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRE 161 (283)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 4689999988 889999999999999658999999876
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.29 Score=46.72 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|+|-+..+|+.|+..|+++| .+|++..+... .+.+..+.+
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~-atVtv~hs~T~--------------------------------~l~~~~~~A 203 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAG-CTVTVCHRFTK--------------------------------NLRHHVRNA 203 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCC-CeEEEEECCCC--------------------------------CHHHHHhhC
Confidence 358999999999999999999999998 59998765321 256777889
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||..+|.+
T Consensus 204 DIvi~avG~p 213 (285)
T PRK10792 204 DLLVVAVGKP 213 (285)
T ss_pred CEEEEcCCCc
Confidence 9999888743
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.26 Score=47.54 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.++|.|.|+ |.+|+.++..|.+.|+ +|+++++++.
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-~V~l~d~~~~ 37 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-DVTIYDISDE 37 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-eEEEEeCCHH
Confidence 468999986 9999999999999995 9999999764
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.25 Score=48.92 Aligned_cols=102 Identities=10% Similarity=0.009 Sum_probs=56.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCC-CCcCCC-----CCCCc---CCCCCeEEEEecCCCHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD-PSESNS-----LLPDS---LSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~-~~~~~~-----~~~~~---~~~~~v~~~~~Dl~d~~~l 78 (467)
|+||.|.|. |-||+.+++.+.++...+++++.-....... ..+..+ ..... ....++ .+.+| .
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i-~V~~~------~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGI-PVAGT------I 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCce-EEcCC------h
Confidence 579999999 9999999999887654566665542210000 000000 00000 000111 11122 2
Q ss_pred HHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 79 KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 79 ~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
.+.+.++|+||.+.+.. .....++.+.++| +++|+.|+.
T Consensus 73 ~el~~~vDVVIdaT~~~---------------~~~e~a~~~~~aG-k~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEKADIVVDATPGG---------------VGAKNKELYEKAG-VKAIFQGGE 111 (341)
T ss_pred hHhhccCCEEEECCCch---------------hhHHHHHHHHHCC-CEEEEcCCC
Confidence 34456899999887632 2245666778888 578887774
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.25 Score=42.98 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
..+++|+|.|| |-+|...++.|++.|+ +|++++.
T Consensus 11 l~~~~vlVvGG-G~va~rka~~Ll~~ga-~V~VIsp 44 (157)
T PRK06719 11 LHNKVVVIIGG-GKIAYRKASGLKDTGA-FVTVVSP 44 (157)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcC
Confidence 46789999998 9999999999999995 9998854
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.42 Score=47.04 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH---HHHHHHHh-
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~- 83 (467)
+.++||+||+|-+|+..++.+.+.|. .+++...++.+. . .....+...+ .|.++. +++.+...
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~----------~-~~~~lGAd~v-i~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKL----------E-LLKELGADHV-INYREEDFVEQVRELTGG 209 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHH----------H-HHHhcCCCEE-EcCCcccHHHHHHHHcCC
Confidence 67999999999999999999999994 555555444311 1 1111222222 223332 33444443
Q ss_pred -CCCEEEEccc
Q 012270 84 -GASTVFYVDA 93 (467)
Q Consensus 84 -~~D~Vih~aa 93 (467)
++|+|+...+
T Consensus 210 ~gvDvv~D~vG 220 (326)
T COG0604 210 KGVDVVLDTVG 220 (326)
T ss_pred CCceEEEECCC
Confidence 5999998876
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.11 Score=52.78 Aligned_cols=76 Identities=9% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
...+++|+|.|+ |-.|+.++..|.+.|..++++.+|+...... +.+.. +. +.....+++.+.+..
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~-------La~~~--~~-----~~~~~~~~l~~~l~~ 242 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQK-------ITSAF--RN-----ASAHYLSELPQLIKK 242 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-------HHHHh--cC-----CeEecHHHHHHHhcc
Confidence 346789999988 9999999999999995589999998642110 11111 01 122334567788889
Q ss_pred CCEEEEcccCC
Q 012270 85 ASTVFYVDATD 95 (467)
Q Consensus 85 ~D~Vih~aa~~ 95 (467)
+|+||++.+.+
T Consensus 243 aDiVI~aT~a~ 253 (414)
T PRK13940 243 ADIIIAAVNVL 253 (414)
T ss_pred CCEEEECcCCC
Confidence 99999998744
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.28 Score=47.12 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=30.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|.| .|.+|+.++..|.+.|+ +|++++|++.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-~V~~~d~~~~ 34 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-TVYGVSRRES 34 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-EEEEEECCHH
Confidence 5799998 69999999999999995 9999998764
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.11 Score=53.00 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|+|+ |-+|+.+++.|...|..+|++.+|++..... +.... +. +..+.+++.+.+.++
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~-------la~~~---g~-----~~~~~~~~~~~l~~a 243 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEE-------LAEEF---GG-----EAIPLDELPEALAEA 243 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH-------HHHHc---CC-----cEeeHHHHHHHhccC
Confidence 45689999987 9999999999999995489999997642110 11111 11 222335566777889
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||.+.+..
T Consensus 244 DvVI~aT~s~ 253 (423)
T PRK00045 244 DIVISSTGAP 253 (423)
T ss_pred CEEEECCCCC
Confidence 9999887633
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.34 Score=46.33 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|.|.|.+|.+|+.++..|+++| ++|++... .. . .+.+..+.+
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~g-atVtv~~s-~t-------------------~------------~l~~~~~~A 202 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKN-ATVTLTHS-RT-------------------R------------NLAEVARKA 202 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCC-CEEEEECC-CC-------------------C------------CHHHHHhhC
Confidence 368999999999999999999999999 59988621 11 0 246667789
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||-+.+.+
T Consensus 203 DIVI~avg~~ 212 (284)
T PRK14179 203 DILVVAIGRG 212 (284)
T ss_pred CEEEEecCcc
Confidence 9999888743
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.3 Score=40.13 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=50.7
Q ss_pred CEEEEEcCC---ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGat---GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|.|++ +-.|..+++.|.++| ++|+.++.....- .+... .-++. +.-+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~~~~i----------------~G~~~-y~sl~------e~p~~i 56 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPKGGEI----------------LGIKC-YPSLA------EIPEPI 56 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTTCSEE----------------TTEE--BSSGG------GCSST-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCCceEE----------------CcEEe-ecccc------CCCCCC
Confidence 579999998 789999999999999 5999987654310 11111 11222 111346
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
|.++-+.. ..-+..+++.|.+.|++.+++.++
T Consensus 57 Dlavv~~~---------------~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 57 DLAVVCVP---------------PDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp SEEEE-S----------------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred CEEEEEcC---------------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 87775543 334556888888889988888877
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.1 Score=52.64 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=27.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCc
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL 45 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~ 45 (467)
|+|.|.| .|++|..++..+. .| ++|+++|+++.+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~G-~~VigvD~d~~k 34 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-QN-HEVVALDILPSR 34 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hC-CcEEEEECCHHH
Confidence 5799995 5999999996554 69 599999998763
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.68 Score=44.11 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDST 42 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~ 42 (467)
||+|.|.|++|-+|+.+++.+.+....++++ ++|.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4799999999999999999998753245544 5543
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.38 Score=47.87 Aligned_cols=65 Identities=26% Similarity=0.340 Sum_probs=49.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi 89 (467)
+|+|+|| |.+|+.++..+.+.| ++|++++..+.. +. ... --+.+.+|..|++.+.++.+.+|+|-
T Consensus 1 ~igiiG~-gql~~~l~~aa~~lG-~~v~~~d~~~~~---p~-------~~~---ad~~~~~~~~d~~~i~~~a~~~dvit 65 (352)
T TIGR01161 1 TVGILGG-GQLGRMLALAARPLG-IKVHVLDPDANS---PA-------VQV---ADHVVLAPFFDPAAIRELAESCDVIT 65 (352)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC-CEEEEECCCCCC---Ch-------hHh---CceeEeCCCCCHHHHHHHHhhCCEEE
Confidence 4889998 899999999999999 599999886531 00 000 11345789999999999999999763
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.65 Score=42.68 Aligned_cols=109 Identities=20% Similarity=0.174 Sum_probs=68.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC----C---CCCCCcCCCCCeEEEE---ecCCC--HH
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES----N---SLLPDSLSSGRAEYHQ---VDVRD--IS 76 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~----~---~~~~~~~~~~~v~~~~---~Dl~d--~~ 76 (467)
|+|.++| -|-.|..++++|+++|| +|+++|+++........+ . ..+...+..|++.++- +|++| .+
T Consensus 1 M~iGmiG-LGrMG~n~v~rl~~~gh-dvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~ 78 (300)
T COG1023 1 MQIGMIG-LGRMGANLVRRLLDGGH-DVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID 78 (300)
T ss_pred Ccceeec-cchhhHHHHHHHHhCCC-eEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH
Confidence 4566675 59999999999999995 999999987532111111 0 0112234557776653 67776 35
Q ss_pred HHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 77 ~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
++...++.=|+||.-.- .|..-+.+-.+..++.|+ +|+=++|.
T Consensus 79 ~la~~L~~GDivIDGGN-------------S~y~Ds~rr~~~l~~kgi-~flD~GTS 121 (300)
T COG1023 79 DLAPLLSAGDIVIDGGN-------------SNYKDSLRRAKLLAEKGI-HFLDVGTS 121 (300)
T ss_pred HHHhhcCCCCEEEECCc-------------cchHHHHHHHHHHHhcCC-eEEeccCC
Confidence 67777777799994331 122223445556667787 78877765
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.14 Score=52.30 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|+|+ |-+|..+++.|.+.|..+|++++|+...... +.... +...+ +.+++.+++.++
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~-------la~~~---g~~~i-----~~~~l~~~l~~a 241 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAED-------LAKEL---GGEAV-----KFEDLEEYLAEA 241 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-------HHHHc---CCeEe-----eHHHHHHHHhhC
Confidence 45689999987 9999999999999984489999997652110 11101 11111 234567778899
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+||.+.+.
T Consensus 242 DvVi~aT~s 250 (417)
T TIGR01035 242 DIVISSTGA 250 (417)
T ss_pred CEEEECCCC
Confidence 999988653
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.32 Score=48.86 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=47.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+|+|.|.|- |-||+.+++.|..-| .+|.+.+|..... + . ....++. -..+++++++.+
T Consensus 190 L~gktVGIvG~-G~IG~~vA~~l~~fG-~~V~~~dr~~~~~----~----~---~~~~g~~-------~~~~l~ell~~a 249 (385)
T PRK07574 190 LEGMTVGIVGA-GRIGLAVLRRLKPFD-VKLHYTDRHRLPE----E----V---EQELGLT-------YHVSFDSLVSVC 249 (385)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEECCCCCch----h----h---HhhcCce-------ecCCHHHHhhcC
Confidence 35689999976 999999999999999 5999999865200 0 0 0001121 123467888999
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+|+.+..
T Consensus 250 DvV~l~lP 257 (385)
T PRK07574 250 DVVTIHCP 257 (385)
T ss_pred CEEEEcCC
Confidence 99886664
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.38 Score=45.97 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|.|.++.+|+.|+..|+++| .+|++..+... .+.+.++.+
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~-atVt~~hs~t~--------------------------------~l~~~~~~A 202 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAG-ATVTICHSKTR--------------------------------DLAAHTRQA 202 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEecCCCC--------------------------------CHHHHhhhC
Confidence 367899999999999999999999999 58987643211 245677789
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+||-.++.
T Consensus 203 DIVV~avG~ 211 (285)
T PRK14189 203 DIVVAAVGK 211 (285)
T ss_pred CEEEEcCCC
Confidence 999987773
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.2 Score=45.38 Aligned_cols=112 Identities=14% Similarity=0.040 Sum_probs=67.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC-----cEEEEEcCCCCccCCCCcCC----CCCC------------CcCCCCCeEEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGK-----CIVRVTDSTQSLQLDPSESN----SLLP------------DSLSSGRAEYH 68 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~-----~~V~~~~r~~~~~~~~~~~~----~~~~------------~~~~~~~v~~~ 68 (467)
+|+|.|+ |-+|..+++.|...|. -.++++|.+.-...+..++- .... +....-+++.+
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 5889986 9999999999999985 58999998664332222220 0000 00111234444
Q ss_pred EecCCCH-H-HH-HHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 69 QVDVRDI-S-QI-KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 69 ~~Dl~d~-~-~l-~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
...+... + .+ .+.++++|+|+.+.- |+..-..+-+.|...++ .+|..++.+.+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD--------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALD--------------NVDARMYVDRRCVYYRK-PLLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHhCC-CEEEEeccccee
Confidence 4444321 1 11 244677899986542 23334457778888886 588888776654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.45 Score=45.48 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|+|.+..+|+.|+..|+++| .+|++.+.... .+.+..+.+
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~-atVtv~hs~T~--------------------------------~l~~~~~~A 208 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRN-ATVSVCHVFTD--------------------------------DLKKYTLDA 208 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCC-CEEEEEeccCC--------------------------------CHHHHHhhC
Confidence 367999999999999999999999999 58988764221 245667789
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||.++|.+
T Consensus 209 DIvv~AvG~p 218 (287)
T PRK14176 209 DILVVATGVK 218 (287)
T ss_pred CEEEEccCCc
Confidence 9999888844
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.096 Score=50.43 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++++|.|+ |..|++++..|.+.|..+|++++|+..
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ 162 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPA 162 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 4578999988 779999999999999558999999765
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.74 Score=44.90 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH---Hh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV---LE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~---~~ 83 (467)
.+.+++|+|++|-+|..+++.+...| .+|++++++..... . +.. .+... ..|..+.+....+ ..
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~~~~~~~~----~---~~~----~~~~~-~~~~~~~~~~~~~~~~~~ 232 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAGSEDKLE----R---AKE----LGADY-VIDYRKEDFVREVRELTG 232 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHH----H---HHH----cCCCe-EEecCChHHHHHHHHHhC
Confidence 45789999999999999999999999 48888887653110 0 000 11111 2355554433322 22
Q ss_pred --CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
++|.++++++.. .....++..+.. .+++.+|+..
T Consensus 233 ~~~~d~~i~~~g~~---------------~~~~~~~~l~~~--G~~v~~~~~~ 268 (342)
T cd08266 233 KRGVDVVVEHVGAA---------------TWEKSLKSLARG--GRLVTCGATT 268 (342)
T ss_pred CCCCcEEEECCcHH---------------HHHHHHHHhhcC--CEEEEEecCC
Confidence 589999988621 112334444444 3788887753
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 467 | ||||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 7e-08 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 4e-07 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-06 | ||
| 2c29_D | 337 | Structure Of Dihydroflavonol Reductase From Vitis V | 5e-06 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 9e-06 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 2e-04 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-04 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-04 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-04 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 8e-04 |
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 3e-55
Identities = 46/346 (13%), Positives = 93/346 (26%), Gaps = 43/346 (12%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G +G + G I R + Q L E ++ D
Sbjct: 23 GLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLE---------------PECRVAEMLD 67
Query: 75 ISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ +++ L G V + + + AC + +V R++Y +A
Sbjct: 68 HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDL----KAQAEALVLFANNIDGLLTCALRPSN 189
+ G E + K + +GL P
Sbjct: 128 YAMPRH-PQGLPGHE--GLFYDSLPSGKSSYVLCKWALDEQAREQAR-NGLPVVIGIPGM 183
Query: 190 VFGPGDTQLVPL-LVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
V G D ++ G + N + A E
Sbjct: 184 VLGELDIGPTTGRVITAIGNGEMTHYVAGQRN---VIDAAEAGRGLLMALER------GR 234
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
G + +T ++ D I E LG P + + + + +
Sbjct: 235 IGERYLLTG-HNLEMADLTRRIAELLGQPAP-QPMSMAMAR----ALATLGRLRYRVSGQ 288
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
L +++ + + D A++ +G+ +L++ + I F
Sbjct: 289 LPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWF 334
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 5e-23
Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 47/239 (19%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
V++ GFVG +L+ L G +VR P + +
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVR----------HPEKIKIENE------HLK 49
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ DV + ++ +V +GA V N D Y+ ++ ++ ++ V R
Sbjct: 50 VKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYD---ETIKVYLTIIDGVKKAGVNR 106
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
+ A GS I G + ++++ +KA E + F +
Sbjct: 107 FLMVGGA-----GSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFS 161
Query: 187 PSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
P+ PG ++V++ VE+ A A + E
Sbjct: 162 PAADMRPGVRTGRYRLGKDDMIVDIVGNSH--------------ISVEDYAAAMIDELE 206
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 69/392 (17%), Positives = 124/392 (31%), Gaps = 100/392 (25%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--STQSLQLDPSESNSLLPD 58
M + +V+ G GFVG +LV RLLELG V V D + N +PD
Sbjct: 25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK------IN--VPD 76
Query: 59 SLSSGRAEYHQVDVRDISQIKKVLEGASTVF----------YVD--ATDLNTDDFYNCYM 106
+ + + D + + + + VF + D +
Sbjct: 77 H---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENN------- 126
Query: 107 IIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC-DL- 163
+ + K ++++VY++ + + + D E + +
Sbjct: 127 --TLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMS 184
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGP---------------GDTQLVPLLVNLAKP 208
K E ++ + L T R NV+GP + P + A
Sbjct: 185 KIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALK 244
Query: 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLS 268
G + G DF +VE+VA+ + A G + N+
Sbjct: 245 GMPLPLENGGVATRDFIFVEDVANGLIACAAD------GTPGGVY---NI---------- 285
Query: 269 IILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT----- 323
+G I L I+E G + + +L R
Sbjct: 286 ----A-----------SGKETSIADLATKINEITG--------NNTELDRLPKRPWDNSG 322
Query: 324 -RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
R A++ +G+S VS+++G+ TI+
Sbjct: 323 KRFGSPEKARRELGFSADVSIDDGLRKTIEWT 354
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 68/378 (17%), Positives = 112/378 (29%), Gaps = 92/378 (24%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--ST-QSLQLDPSESNSLLPDSLSSGR 64
P+ ++ GF+G +L+ LL+L V D +T LD S
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQW---SN 82
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFY--------------VDATDLNTDDFYNCYMIIVQ 110
++ Q D+R++ G V + + + N +
Sbjct: 83 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN-----------ID 131
Query: 111 GAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------- 163
G N++ A R+ KV+ Y +++ G H E
Sbjct: 132 GFLNMLIAARDAKVQSFTYAASSSTY--GDHPGLPKVED----------TIGKPLSPYAV 179
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQL-----VPLLVNLAKPGWTKFIIG 216
K E + G T LR NVFG D +P + G +I G
Sbjct: 180 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYING 239
Query: 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGY 276
GE DF Y+EN A++ AA A + I + +GL
Sbjct: 240 DGETSRDFCYIENTVQANLLAATAGL----DARNQVYNIAVGGRTSLNQLFFALRDGLAE 295
Query: 277 QRPFIKLPTGVVWYIILLVKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKH 334
+ + G + A ++ A K
Sbjct: 296 NGVSYHRE----------PVYRDFREGDVRHSL------------ADISK------AAKL 327
Query: 335 IGYSPVVSLEEGVSSTIQ 352
+GY+P + GV+ +
Sbjct: 328 LGYAPKYDVSAGVALAMP 345
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 46/370 (12%), Positives = 90/370 (24%), Gaps = 107/370 (28%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----AEYHQVD 71
G GF+G+ +V + G + + + EY D
Sbjct: 10 GTGFLGQYVVESIKNDGNTPIIL-------------------TRSIGNKAINDYEYRVSD 50
Query: 72 VRDISQIKKVLEGASTVFY----------VDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
I + L V + + N +N+ AC E
Sbjct: 51 YTLEDLINQ-LNDVDAVVHLAATRGSQGKISEFHDN-----------EILTQNLYDACYE 98
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------KAQAEALVLF 173
+ +VY ST +E L K E +
Sbjct: 99 NNISNIVYASTISAY--SDETSLPWNEK----------ELPLPDLMYGVSKLACEHIGNI 146
Query: 174 ANNIDGLLTCALRPSNVFGP-GDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231
+ GL LR ++++G + A G + + +F Y ++ A
Sbjct: 147 YSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAA 206
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYI 291
+ + A + F I + + + ++ + I G + +
Sbjct: 207 KSVIYALKQ------EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNP------ 254
Query: 292 ILLVKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
+Y D A++ + +S + V
Sbjct: 255 --------NANEGIHSSY------------------MDSSKAKELLDFSTDYNFATAVEE 288
Query: 350 TIQSFSHLAR 359
L
Sbjct: 289 IHLLMRGLDD 298
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 3e-20
Identities = 58/365 (15%), Positives = 100/365 (27%), Gaps = 92/365 (25%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G +G LV L E + D + ++ G ++ +DV +
Sbjct: 7 SSGQIGTELVPYLAEKYGKKNVIAS-------DIVQRDT--------GGIKFITLDVSNR 51
Query: 76 SQIKKVLE--GASTVFY----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
+I + +E +F+ + A D Y + + G N++ A ++ +V ++V
Sbjct: 52 DEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRVEKVVI 109
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---------KAQAEALVLFANNIDGL 180
ST V F + K AE L + GL
Sbjct: 110 PSTIGV-FGPETPKNKVPSI-----------TITRPRTMFGVTKIAAELLGQYYYEKFGL 157
Query: 181 LTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
+LR + G T + A + Y+ + A
Sbjct: 158 DVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217
Query: 235 VCAAEALDSRMVS-----VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
V EA ++V V F T E S I E + K
Sbjct: 218 VDLYEADRDKLVLRNGYNVTAYTF--TPSE------LYSKIKERIPEFEIEYKED----- 264
Query: 290 YIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
+K+ A+ + D A G+S L+ +
Sbjct: 265 --------FRDKIA----------------ATWPESLDSSEASNEWGFSIEYDLDRTIDD 300
Query: 350 TIQSF 354
I
Sbjct: 301 MIDHI 305
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 58/374 (15%), Positives = 111/374 (29%), Gaps = 111/374 (29%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR---------AEYH 68
G +G + LLE G +V + D+ ++GR +
Sbjct: 31 GQIGSHIAELLLERGDKVVGI-------------------DNFATGRREHLKDHPNLTFV 71
Query: 69 QVDVRDISQIKKVLEGAS--TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ + D + + +++ V + A+ + DD+YN + G NVV A ++ V R
Sbjct: 72 EGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGR 131
Query: 127 LVYNSTADVVFDGSHDI-----HNGDET-----LTCCWKFQDLMCDLKAQAEA-LVLFAN 175
VY TA H + ++ K+ E L
Sbjct: 132 FVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAIS------------KSANEDYLEYS-- 177
Query: 176 NIDGLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
GL R +NV GP + +P+ G F+ + DF +V+++A A
Sbjct: 178 ---GLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFV---TKARRDFVFVKDLARAT 231
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
V A + + A+ ++ + + ++E +
Sbjct: 232 VRAVDGVGHG-------AYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR--------- 275
Query: 295 VKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI- 351
D + G L+E V++ +
Sbjct: 276 ----ELGPDDAPSIL------------------LDPSRTIQDFGKIEFTPLKETVAAAVA 313
Query: 352 --------QSFSHL 357
++HL
Sbjct: 314 YFREYGVSGGYTHL 327
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 72/385 (18%), Positives = 122/385 (31%), Gaps = 106/385 (27%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--ST-QSLQLDPSESNSLLPDSLSSGR 64
P+T ++ GF+G +L+ +LL+L +V D ST LD ++ L + R
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKT---LVSTEQWSR 80
Query: 65 AEYHQVDVRDISQIKKVLEGASTVF-----------------YVDATDLNTDDFYNCYMI 107
+ + D+RD++ ++V++G V N
Sbjct: 81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNAT---------N---- 127
Query: 108 IVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---- 163
+ G N++ A + +V+ Y +++ G H E
Sbjct: 128 -ITGFLNILHAAKNAQVQSFTYAASSSTY--GDHPALPKVEE----------NIGNPLSP 174
Query: 164 ----KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQL-----VPLLVNLAKPGWTKF 213
K E G T LR NVFG D +P G +
Sbjct: 175 YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVY 234
Query: 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273
I G GE DF Y++NV ++ +A A D S + + + + I +
Sbjct: 235 INGDGETSRDFCYIDNVIQMNILSALAKD----SAKDNIYNVAVGDRTTLNELSGYIYDE 290
Query: 274 LGYQRPFIKLPTGVVWYIILL------VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327
L KL I V+ HS + D
Sbjct: 291 LNLIHHIDKLS------IKYREFRSGDVR------------HSQA--------------D 318
Query: 328 CIAAQKHIGYSPVVSLEEGVSSTIQ 352
A + Y P + + EG+ ++
Sbjct: 319 VTKAIDLLKYRPNIKIREGLRLSMP 343
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 65/349 (18%), Positives = 113/349 (32%), Gaps = 90/349 (25%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----- 64
VV G GF+G +V +L E + + V D+ LSSG
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNE--IVVIDN------------------LSSGNEEFVN 42
Query: 65 --AEYHQVDVRDISQIKKVLEGASTVF----YVDATDLNTDDFYNCYMIIVQGAKNVVTA 118
A + D+ IK L+GA V+ D ++ Y V ++ A
Sbjct: 43 EAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVRI-GAENPDEIYRNNVLATYRLLEA 100
Query: 119 CRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAE 168
R+ V R+V+ ST+ V G + E + K E
Sbjct: 101 MRKAGVSRIVFTSTSTVY--GEAKVIPTPEDYPTHPISLYGAS------------KLACE 146
Query: 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTY 226
AL+ + + R +NV G T + ++ L + I+G+GE + Y
Sbjct: 147 ALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIY 206
Query: 227 VENVAHAHVCAAEALDSRMV-------------------SVAGMAFFITNLEPIKFWD-- 265
+ + A + + + G++ + W
Sbjct: 207 ISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGD 266
Query: 266 ----FLSII-LEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309
LSI L+ LG+ +P + + V+ + E L ++H
Sbjct: 267 VPVMLLSIEKLKRLGW-KPRYNSEEA----VRMAVRDLVEDLDEEGHHH 310
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 7e-17
Identities = 54/268 (20%), Positives = 96/268 (35%), Gaps = 69/268 (25%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----- 64
+V G GF+G +V LL G + + D+L++G+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVL-------------------DNLATGKRENVP 42
Query: 65 --AEYHQVDVRDISQIKKVLEGAS--TVF------YVDATDLNTDDFYNCYMIIVQGAKN 114
+ +VD+RD +++ V V + +D + + + G N
Sbjct: 43 KGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVS---VEDPVLDFEVNLLGGLN 99
Query: 115 VVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLK 164
++ ACR+ V +LV+ ST ++ + +ET + K
Sbjct: 100 LLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAAS------------K 147
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLVPLLVNLAKPGWTKFIIGS-- 217
A E + GL +LR NV+GP G+ +V + G +
Sbjct: 148 AAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKT 207
Query: 218 ---GENMSDFTYVENVAHAHVCAAEALD 242
+ D+ YV +VA AH A +L+
Sbjct: 208 PGDEGCVRDYVYVGDVAEAHALALFSLE 235
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 2e-16
Identities = 51/373 (13%), Positives = 103/373 (27%), Gaps = 44/373 (11%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCI----VRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+++ G +G SL L V + P
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------------ARRTRPAWHEDNP 49
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYV-DATDLNTDDFYNCYMIIVQGAKNVVTACREC- 122
Y Q D+ D + L + V +V T N + +NV+ A
Sbjct: 50 INYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNC 109
Query: 123 -KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---KAQAEALVLFANNID 178
++ + + + + + + + ++ +
Sbjct: 110 PNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKE 169
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG----------SGENMSDFTYVE 228
GL RP N+FG ++ L+ L G + + SD + +
Sbjct: 170 GLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDAD 229
Query: 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG-----YQRPFIKL 283
+A H+ AA AF ++N + K+ F ++ E G Y+
Sbjct: 230 LIAEHHIWAAVD-----PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLK 284
Query: 284 PTGVVWYIILLVKWIHEKLGLR--TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV 341
++ + + I + GL + + D + K G+
Sbjct: 285 LQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFR 344
Query: 342 SLEEGVSSTIQSF 354
+ + S I
Sbjct: 345 NSKNAFISWIDKA 357
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 7e-16
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 56/234 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G +GR + RL + + I+R+ D L P + E Q D+ D
Sbjct: 11 AAGQLGRVMRERLAPMAE-ILRLAD--------------LSPLDPAGPNEECVQCDLADA 55
Query: 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135
+ + ++ G + ++ F + G N+ A R R+V+ S+
Sbjct: 56 NAVNAMVAGCDGIVHL-GGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHT 114
Query: 136 VFDGSHDIHNG-DET----------LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ G + ++ K E L + G T
Sbjct: 115 I--GYYPQTERLGPDVPARPDGLYGVS------------KCFGENLARMYFDKFGQETAL 160
Query: 185 LRPSNVFGPGD--------------TQLVPLLVNLAKPGWTKFIIGSGENMSDF 224
+R + + L+ + G + G+ N + +
Sbjct: 161 VRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCP-VVWGASANDAGW 213
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 38/254 (14%), Positives = 67/254 (26%), Gaps = 80/254 (31%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA----EYHQVD 71
G VG ++ L L VR++D + G A E D
Sbjct: 10 AAGGVGSAIRPHLGTLA-HEVRLSDI------------------VDLGAAEAHEEIVACD 50
Query: 72 VRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+ D + +++ + + D N + GA N+ A R
Sbjct: 51 LADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQAN-----------IIGAYNLYEAARN 99
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDET---------LTCCWKFQDLMCDLKAQAEALVL 172
R+V+ S+ + E L+ K E L
Sbjct: 100 LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLS------------KCFGEDLAS 147
Query: 173 FANNIDGLLTCALRPSNVFGPGDT--------------QLVPLLVNLAKPGWTKFIIGSG 218
+ + T +R + F +L+ K G T + G+
Sbjct: 148 LYYHKFDIETLNIRIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCT-VVYGAS 206
Query: 219 ENMSDFTYVENVAH 232
N + + A
Sbjct: 207 ANTESWWDNDKSAF 220
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 73/374 (19%), Positives = 123/374 (32%), Gaps = 100/374 (26%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR------ 64
VV G GF+G LV +L+ELG +V V D+LSSGR
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVV-------------------DNLSSGRREFVNP 43
Query: 65 -AEYHQVDVRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAK 113
AE H D++D S + VF + F V
Sbjct: 44 SAELHVRDLKDYSWGAGI--KGDVVFHFAANPEVRLSTTEPIV---HFNEN----VVATF 94
Query: 114 NVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDL 163
NV+ R+ VR +V+ S++ V G D+ E
Sbjct: 95 NVLEWARQTGVRTVVFASSSTVY--GDADVIPTPEEEPYKPISVYGAA------------ 140
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFII-GSGENM 221
KA E + + G+ A+R +NV GP ++ + + + G G
Sbjct: 141 KAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQR 200
Query: 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI 281
+ YV + A + A + + + +A + N++ ++ D I+ E LG +
Sbjct: 201 KSYLYVRDAVEATLAAWKKFEE--MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIR 258
Query: 282 KLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL-ASRTRTFDCIAAQKHIGYSPV 340
+P T + + + + T+ K G+ P
Sbjct: 259 LVP--------------------STPDGRGWPGDVKYMTLAVTK------LMKLTGWRPT 292
Query: 341 VSLEEGVSSTIQSF 354
++ E V T +
Sbjct: 293 MTSAEAVKKTAEDL 306
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 61/365 (16%), Positives = 104/365 (28%), Gaps = 83/365 (22%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G ++V L + G + V D+ L L D + + D
Sbjct: 54 GAGFIGSNIVKALNDKGITDILVVDN-----LKDGTKFVNLVDL--NIADYMDKEDFLIQ 106
Query: 76 SQIKKVLEGASTVF----YVDATDLNTDDFYNCYMII--VQGAKNVVTACRECKVRRLVY 129
+ +F T+ + YM+ Q +K ++ C E ++ +Y
Sbjct: 107 IMAGEEFGDVEAIFHEGACSSTTEWDGK-----YMMDNNYQYSKELLHYCLEREIP-FLY 160
Query: 130 NSTADVVFDGSHDIHNGDETL--------TCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
S+A + D E + K + V
Sbjct: 161 ASSAATYGGRTSDFIESREYEKPLNVFGYS------------KFLFDEYVRQILPEANSQ 208
Query: 182 TCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAH 234
R NV+GP G V L G + + GS DF YV +VA +
Sbjct: 209 IVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN 268
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIIL 293
+ E S + ++ T F L + +I P
Sbjct: 269 LWFLENGVSGIFNLG------TG-RAESFQAVADATLAYHKKGQIEYIPFP--------- 312
Query: 294 LVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQS 353
+KL R + + D + P ++ EGV+ +
Sbjct: 313 ------DKLKGRYQAFTQA--------------DLTNLRAAGYDKPFKTVAEGVTEYMAW 352
Query: 354 FSHLA 358
+ A
Sbjct: 353 LNRDA 357
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 8e-15
Identities = 62/377 (16%), Positives = 102/377 (27%), Gaps = 89/377 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G L L+ G V V D L++ P L E + D+ D+
Sbjct: 15 GAGFIGGHLARALVASG-EEVTVLDD---LRVPPMIPPEGTGKFLEKPVLELEERDLSDV 70
Query: 76 SQIKKVLEGA--STVFYVD---ATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ + S N V ++++ C V ++V
Sbjct: 71 RLV--YHLASHKSVPRSFKQPLDYLDN-----------VDSGRHLLALCTSVGVPKVVVG 117
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------KAQAEALVL-FANNIDGLL 181
ST +V G D E K E +
Sbjct: 118 STCEVY--GQADTLPTPED----------SPLSPRSPYAASKVGLEMVAGAHQRASVAPE 165
Query: 182 TCALRPSNVFGP-GDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
+R NV+GP + P L + G GE DFTY+ +V V A
Sbjct: 166 VGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALAN 225
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWI 298
+ + + D + I+ + +
Sbjct: 226 -------RPLPSVVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEI---------- 268
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357
+ D + IG S + +EEG+ T++ +
Sbjct: 269 ---------TEFRA--------------DTALQTRQIGERSGGIGIEEGIRLTLEWWQ-- 303
Query: 358 ARDSSLAYSRDFNEQSK 374
+RD R F E+
Sbjct: 304 SRDLDDIRQRIFQEEGA 320
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 62/370 (16%), Positives = 102/370 (27%), Gaps = 93/370 (25%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G ++V L + G + V D+ L L D + + D
Sbjct: 7 GAGFIGSNIVKALNDKGITDILVVDN-----LKDGTKFVNLVDL--NIADYMDKEDFLIQ 59
Query: 76 SQIKKVLEGASTVF----YVDATDLNTDDFYNCYMII--VQGAKNVVTACRECKVRRLVY 129
+ +F T+ + YM+ Q +K ++ C E ++ +Y
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTTEWDGK-----YMMDNNYQYSKELLHYCLEREIPF-LY 113
Query: 130 NSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
S+A G + + K + V
Sbjct: 114 ASSAATY--GGRTSDFIESREYEKPLNVYGYS------------KFLFDEYVRQILPEAN 159
Query: 180 LLTCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFII-GSGENMSDFTYVENVAH 232
R NV+GP G V L G + + GS DF YV +VA
Sbjct: 160 SQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAD 219
Query: 233 AHVCAAEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRP-FIKLPTGVV 288
++ E S I NL F L + +I P
Sbjct: 220 VNLWFLENGVSG----------IFNLGTGRAESFQAVADATLAYHKKGQIEYIPFP---- 265
Query: 289 WYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348
+KL R + + D + P ++ EGV+
Sbjct: 266 -----------DKLKGRYQAFTQA--------------DLTNLRAAGYDKPFKTVAEGVT 300
Query: 349 STIQSFSHLA 358
+ + A
Sbjct: 301 EYMAWLNRDA 310
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 64/376 (17%), Positives = 112/376 (29%), Gaps = 86/376 (22%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ GF+ + RL G V +D + E+H VD
Sbjct: 33 SITGAGGFIASHIARRLKHEG-HYVIASDW-----KKNEHMTEDMFCD------EFHLVD 80
Query: 72 VRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+R + KV EG VF ++ + YN + N++ A R
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVI--MYNN----TMISFNMIEAARI 134
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLMC-DL-KAQAEALVLFANN 176
++R Y S+A + W + L K E L N
Sbjct: 135 NGIKRFFYASSACIY--PEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK 192
Query: 177 IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFII-GSGENMSDFTYVEN 229
G+ R N++GP T + A+ +F + G G FT+++
Sbjct: 193 DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 252
Query: 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGV 287
E + S I + E + + ++L + P I P GV
Sbjct: 253 C-------VEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGV 305
Query: 288 VWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGV 347
R R D ++ +G++P + L+EG+
Sbjct: 306 ----------------------------------RGRNSDNNLIKEKLGWAPNMRLKEGL 331
Query: 348 SSTIQSF-SHLARDSS 362
T + ++ +
Sbjct: 332 RITYFWIKEQIEKEKA 347
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 70/378 (18%), Positives = 128/378 (33%), Gaps = 87/378 (23%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTD--STQSLQLDPSESNSLLPDS 59
DE +T ++ G GFVG +L E K V V D + +L + S+ +
Sbjct: 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN 64
Query: 60 LSSGRAEYHQVDVRDISQIKKVLE-GASTVFY------VDATDLNTDDFYNCYMIIVQGA 112
L + E D+ + ++++ + +F+ + N Q
Sbjct: 65 LIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTN-----YQAF 119
Query: 113 KNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------K 164
N++ R K + ++Y S+A V G+ + K
Sbjct: 120 LNLLEIARSKKAK-VIYASSAGVY---------GNTKAP----NVVGKNESPENVYGFSK 165
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFIIGSG 218
+ VL ++ + + LR NV+GP T + L A + G
Sbjct: 166 LCMDEFVL--SHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFG 223
Query: 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278
E + DF Y+E+V A+V A +A S + +V + + + + +SI+ E LG +
Sbjct: 224 EQLRDFVYIEDVIQANVKAMKAQKSGVYNVG------YS-QARSYNEIVSILKEHLGDFK 276
Query: 279 P-FIKLP-TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIG 336
+IK P + H+ A +
Sbjct: 277 VTYIKNPYAF---FQ----------------KHT--------QAHIEP------TILDLD 303
Query: 337 YSPVVSLEEGVSSTIQSF 354
Y+P+ LE G+ +
Sbjct: 304 YTPLYDLESGIKDYLPHI 321
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-13
Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 39/263 (14%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G L RL G VT +S + +G + DV
Sbjct: 12 GDLGLELARRLTAQG---HEVTGLRRS------------AQPMPAG-VQTLIADVTRPDT 55
Query: 78 IKKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136
+ ++ + +D+ Y + V+G +N ++A ++ + + S+ V
Sbjct: 56 LASIVHLRPEILVYCVAASEYSDEHYR--LSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113
Query: 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT 196
+ DE +D +AEAL+ + LR S ++GPG
Sbjct: 114 GQEVEEW--LDEDTPP--IAKDFSGKRMLEAEALLA------AYSSTILRFSGIYGPGRL 163
Query: 197 QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256
+++ T + ++ + ++ A A + R +V + +T
Sbjct: 164 RMIRQAQ-------TPEQWPARNAWTNRIHRDDGAAF---IAYLIQQRSHAVPERLYIVT 213
Query: 257 NLEPIKFWDFLSIILEGLGYQRP 279
+ +P+ D L + + G P
Sbjct: 214 DNQPLPVHDLLRWLADRQGIAYP 236
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 31/241 (12%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+G ++ LLE G V T ++ + + L +S + + D+ +
Sbjct: 11 GFLGSWIIKSLLENG-YSVNTT--IRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDS 67
Query: 78 IKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYNST 132
+EG +F+ A+ D + + V GA ++ AC K V+R +Y S+
Sbjct: 68 FAAAIEGCVGIFHT-ASPIDFAVSEPEE-IVTKRTVDGALGILKACVNSKTVKRFIYTSS 125
Query: 133 ADVVFDGSHDIHNGDET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNIDGLLT 182
V D DE+ + + K AE VL F N ID ++T
Sbjct: 126 GSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGID-VVT 184
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY----VENVAHAHVCAA 238
L + G +P + A ++G E + + V++VA AH+
Sbjct: 185 --LILPFIVGRFVCPKLPDSIEKAL----VLVLGKKEQIGVTRFHMVHVDDVARAHIYLL 238
Query: 239 E 239
E
Sbjct: 239 E 239
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 8e-13
Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+G LV+RLLE G VR T + + + LL + + D+ D
Sbjct: 15 GFIGSWLVMRLLERG-YTVRAT--VRDPT-NVKKVKHLLDLPKAETHLTLWKADLADEGS 70
Query: 78 IKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYNST 132
+ ++G + VF+V AT D + D N +I ++G ++ +C K VRRLV+ S+
Sbjct: 71 FDEAIKGCTGVFHV-ATPMDFESKDPEN-EVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128
Query: 133 ADVVFDGSHDIHNGDET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNIDGLLT 182
A V H + DE+ + C + K AE +A NNID +T
Sbjct: 129 AGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNID-FIT 187
Query: 183 CALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
+ P+ V GP +P ++ + I ++++ +AH+
Sbjct: 188 --IIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVH---LDDLCNAHIYLF 242
Query: 239 E 239
E
Sbjct: 243 E 243
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 8e-13
Identities = 48/369 (13%), Positives = 106/369 (28%), Gaps = 99/369 (26%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G L +L +L + D + N+ D ++SG + V+ D +Q
Sbjct: 12 GQIGTELTQKLRKLYGTENVIAS-------DIRKLNT---DVVNSGP--FEVVNALDFNQ 59
Query: 78 IKKVL--EGASTVF---------YVD----ATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
I+ ++ + ++ A DLN + +V+ +
Sbjct: 60 IEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN-----------MNSLFHVLNLAKAK 108
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAEALVL 172
K++++ + S+ VF + N + ++ K E
Sbjct: 109 KIKKIFWPSSIA-VFGPTTPKENTPQYTIMEPSTVYGIS------------KQAGERWCE 155
Query: 173 FANNIDGLLTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226
+ +NI G+ ++R + G T + A S E Y
Sbjct: 156 YYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMY 215
Query: 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
+++ A + +A ++ + + P + + + +
Sbjct: 216 MDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFT----------- 264
Query: 287 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
I +K+ S + D A++ + LE
Sbjct: 265 -----ITYEPDFRQKIA----------------DSWPASIDDSQAREDWDWKHTFDLESM 303
Query: 347 VSSTIQSFS 355
I+ S
Sbjct: 304 TKDMIEHLS 312
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 3e-12
Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 53/229 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G + + + ++ G +VR D S S P A DV
Sbjct: 13 GQTGLTTLAQAVQAGYEVTVLVR----------DSSRLPSEGPR-----PAHVVVGDVLQ 57
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + K + G V + T + ++ +GA+N+V A + V ++V ++A
Sbjct: 58 AADVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAHGVDKVVACTSAF 113
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
+++D + + Q + D + ++ + GL A+ P G
Sbjct: 114 LLWDPTKVPP----------RLQAVTDD-HIRMHKVLRES----GLKYVAVMPP-HIGDQ 157
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
+ G S ++ H L +
Sbjct: 158 P------------LTGAYTVTLDGRGPSRVISKHDLGH---FMLRCLTT 191
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 4e-12
Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 40/238 (16%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G ++ G IVR + + Q D+ D
Sbjct: 10 GRAGSRILEEAKNRGHEVTAIVR----------NAGKITQTHK------DINILQKDIFD 53
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
L + V + + + V ++++ RL+ A
Sbjct: 54 --LTLSDLSDQNVVVDAYGISPDEAEKH------VTSLDHLISVLNGTVSPRLLVVGGAA 105
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
+ + + +AQA+ L ++ + PS +F PG
Sbjct: 106 SLQIDEDGNTLLESK---GLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPG 162
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE--ALDSRMVSVAG 250
+ + G + F +E+ A A + E + +VAG
Sbjct: 163 ERTGDYQIG-----KDHLLFGSDGNS---FISMEDYAIAVLDEIERPNHLNEHFTVAG 212
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 45/276 (16%), Positives = 74/276 (26%), Gaps = 50/276 (18%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-----------DSLS 61
V+ G G+ G + L L + + V + + L SL P +L+
Sbjct: 16 VIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT 75
Query: 62 SGRAEYHQVDVRDISQIKKVL--EGASTVF------YVDATDLNTDDFYNCYMIIVQGAK 113
E + D+ D + + +V + ++ V G
Sbjct: 76 GKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL 135
Query: 114 NVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------- 163
NV+ A +E LV T + DI G T+T + L
Sbjct: 136 NVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLS 195
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPG--------------------DTQLVPLLV 203
K + F G+ L V+G T L V
Sbjct: 196 KVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCV 255
Query: 204 NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
A G + G G + + + A
Sbjct: 256 QAAV-GHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA 290
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 32/242 (13%), Positives = 49/242 (20%), Gaps = 54/242 (22%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSG 63
++ +L G GR L+ +LE G I R L D +
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGR---------------RKLTFDEEAYK 63
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK 123
VD + +G F T + +
Sbjct: 64 NVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG 123
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
+ S+ G+ N K + EA V +
Sbjct: 124 CKHFNLLSSK-----GADKSSNFLYLQV------------KGEVEAKVE---ELKFDRYS 163
Query: 184 ALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
RP + LV W V V A +
Sbjct: 164 VFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGH---------SVPVVTVVRAMLNNV 214
Query: 239 EA 240
Sbjct: 215 VR 216
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 52/235 (22%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+V+ G V R L+ L G +VR + + L G ++
Sbjct: 25 LVVGANGKVARYLLSELKNKGHEPVAMVR----------NEEQGPELRER----GASDIV 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
++ + V + A +I + GA + + ++R +
Sbjct: 71 VANLEE--DFSHAFASIDAVVFA-AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFI 127
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S+ G+ D G + K A+ + + L +RP
Sbjct: 128 MVSSV-----GTVDPDQGPMNMR-------HYLVAKRLADDELKRS----SLDYTIVRPG 171
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
+ T V + ++ +VA AE +D
Sbjct: 172 PLSNEESTGKVTV-------------SPHFSEITRSITRHDVAK---VIAELVDQ 210
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 56/368 (15%), Positives = 102/368 (27%), Gaps = 90/368 (24%)
Query: 18 GFVGRSLVLRLLELGKCI------VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
G VGR L RL++ G + D P SG + D
Sbjct: 24 GMVGRKLTQRLVKDGSLGGKPVEKFTLIDV-----FQPEAPAGF------SGAVDARAAD 72
Query: 72 VRDISQIKKVLE-GASTVF----YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR- 125
+ + +K++E +F V DF Y I + G + + A R +
Sbjct: 73 LSAPGEAEKLVEARPDVIFHLAAIVSGE--AELDFDKGYRINLDGTRYLFDAIRIANGKD 130
Query: 126 ----RLVYNSTADVVFDGSHDIHNGDETLT------CCWKFQDLMCDLKAQAEALVLFAN 175
R+V+ S+ VF DE T K +C E L+ +
Sbjct: 131 GYKPRVVFTSSI-AVFGAPLPYPIPDEFHTTPLTSYGTQK---AIC------ELLLSDYS 180
Query: 176 NIDGLLTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY--- 226
+R + + ++ G +
Sbjct: 181 RRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRS 240
Query: 227 -VENVAHAHVCAAEAL-DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284
V + H + E + R +S+ G++ T E +E L
Sbjct: 241 AVGFLIHGAMIDVEKVGPRRNLSMPGLSA--TVGE----------QIEALRKVAG----- 283
Query: 285 TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLE 344
+ + L + + F+ A++ +G++ S E
Sbjct: 284 --------------EKAVALIRREPNEMIMRMC--EGWAPGFEAKRARE-LGFTAESSFE 326
Query: 345 EGVSSTIQ 352
E + I+
Sbjct: 327 EIIQVHIE 334
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 7e-10
Identities = 32/256 (12%), Positives = 65/256 (25%), Gaps = 61/256 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G ++V G +VR DP ++ L A +
Sbjct: 10 GRAGSAIVAEARRRGHEVLAVVR----------DPQKAADRL-------GATVATLVKEP 52
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + L+ V + + Y + + A ++V+ R + +A
Sbjct: 53 LVLTEADLDSVDAVVDALSVPWGSGRGY----LHLDFATHLVSLLRNSDTLAVFILGSAS 108
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSN 189
+ G+ D F + AL + + + PS
Sbjct: 109 LAMPGADHPMILD--------FPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSE 160
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD-----FTYVENVAHAHVCAAEALDSR 244
F G T ++ G + N+A A + E
Sbjct: 161 AFPSGPA--------------TSYVAGKDTLLVGEDGQSHITTGNMALAILDQLEHP--- 203
Query: 245 MVSVAGMAFFITNLEP 260
+ + + +
Sbjct: 204 --TAIRDRIVVRDADL 217
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGK----CIVRVTDSTQSLQLDPSESNSLLPDSLSSG 63
+ VV G G G S+ LLE G + R + +L
Sbjct: 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKEL-------------RLQ 51
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII-VQGAKNVVTACREC 122
AE Q D D ++ L GA F + T+ + +C V+ K + R
Sbjct: 52 GAEVVQGDQDDQVIMELALNGAYATF------IVTNYWESCSQEQEVKQGKLLADLARRL 105
Query: 123 KVRRLVYNSTADV 135
+ +VY+ ++
Sbjct: 106 GLHYVVYSGLENI 118
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 31/247 (12%), Positives = 63/247 (25%), Gaps = 63/247 (25%)
Query: 18 GFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
G G+ + +L E K +VR + + A+ D+
Sbjct: 14 GRTGQIVYKKLKEGSDKFVAKGLVR----------SAQGKEKIGGE------ADVFIGDI 57
Query: 73 RDISQIKKVLEGASTVFYV----------------DATDLNTDDFYNCYMIIVQGAKNVV 116
D I +G + + + +D + G KN +
Sbjct: 58 TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
Query: 117 TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
A + V+ +V + G+ + K +AE + +
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNI----------LVWKRKAEQYLADS-- 165
Query: 177 IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
G +R + L+ G ++ + +VA
Sbjct: 166 --GTPYTIIRAGGLLDKEGGVRELLV------GKDDELLQTDTKTVP---RADVAE---V 211
Query: 237 AAEALDS 243
+AL
Sbjct: 212 CIQALLF 218
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 69/249 (27%), Positives = 97/249 (38%), Gaps = 39/249 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVT--DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
GFV LV LL+ G V T D D + S L + G + + D+ D
Sbjct: 19 GFVASLLVKLLLQKG-YAVNTTVRD------PDNQKKVSHLLELQELGDLKIFRADLTDE 71
Query: 76 SQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYN 130
+ + G VF+V AT ++D N MI +QG NV+ AC K V+R++
Sbjct: 72 LSFEAPIAGCDFVFHV-ATPVHFASEDPEN-DMIKPAIQGVVNVMKACTRAKSVKRVILT 129
Query: 131 STADVVFDGSHDIHNG--DET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNID 178
S+A V D DE + + K AE FA NNID
Sbjct: 130 SSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNID 189
Query: 179 GLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTY----VENV 230
L+T + P+ + G T VP L ++L G M + VE+V
Sbjct: 190 -LIT--VIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDV 246
Query: 231 AHAHVCAAE 239
AH+ AE
Sbjct: 247 CRAHIFVAE 255
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 53/227 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-R 73
G VG+SL+ L R + + DV
Sbjct: 10 GRVGKSLLKSLSTTDYQIYAGAR----------KVEQVPQY-------NNVKAVHFDVDW 52
Query: 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
++ K L G + ++ + + + GA ++ A + +V+R + ST
Sbjct: 53 TPEEMAKQLHGMDAI--INVSGSGGKSLLK---VDLYGAVKLMQAAEKAEVKRFILLSTI 107
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193
I G + L K A+ + N+D ++P +
Sbjct: 108 F-SLQPEKWIGAGFDALK-------DYYIAKHFADLYLTKETNLD---YTIIQPGALTEE 156
Query: 194 GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
T L+ + + +S + +VA
Sbjct: 157 EATGLIDI----------------NDEVSASNTIGDVADTIKELVMT 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 9e-09
Identities = 78/488 (15%), Positives = 139/488 (28%), Gaps = 191/488 (39%)
Query: 5 EAIPRTCVVLNGRGFVGRS-LVLRL----------------LELGKC--IVRVTDSTQSL 45
E P V+++G G++ + L + L L C V + Q L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 46 --QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYN 103
Q+DP+ ++ D S+ + H + + L L + + N
Sbjct: 206 LYQIDPNWTS--RSDHSSNIKLRIHSIQAE-----LRRL-------------LKSKPYEN 245
Query: 104 CYMII--VQGAKNVVTACR-ECKVRRLV---YNSTADVVFDGSHDIH----NGDETLTCC 153
C +++ VQ AK A CK+ L+ + D + + H + TLT
Sbjct: 246 CLLVLLNVQNAK-AWNAFNLSCKI--LLTTRFKQVTDFL-SAATTTHISLDHHSMTLT-- 299
Query: 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213
E L +D L + P +++
Sbjct: 300 ------------PDEVKSLLLKYLDCRPQD-LPREVL------TTNPRRLSII------- 333
Query: 214 IIGSGENMSDF--TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK----FWDFL 267
E++ D T+ +N H + + L + ++ + LEP + F L
Sbjct: 334 ----AESIRDGLATW-DNWKHVNC---DKL-TTIIES-----SLNVLEPAEYRKMFDR-L 378
Query: 268 SIILEGLGYQRPFIKLPTGV---VWY---------II-------LLVKW-------IH-- 299
S+ +PT + +W+ ++ L+ K I
Sbjct: 379 SVFPPS-------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 300 -----EKLGLRTYNH-SLSACYIVQLASRTRTFDCIAAQK---------HIGYSPVVSLE 344
KL H S+ Y + +TFD HIG+
Sbjct: 432 YLELKVKLENEYALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYSHIGH------- 479
Query: 345 EGVSSTIQSFSHLAR----DSSLAYSR---DFN-EQSKVEK----LLGGGKVADILLWKD 392
HL + + DF + K+ G + + L
Sbjct: 480 -----------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ--Q 526
Query: 393 EKKTFTYF 400
K Y
Sbjct: 527 LKFYKPYI 534
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 27/279 (9%), Positives = 67/279 (24%), Gaps = 66/279 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
+GFVG++L L +
Sbjct: 8 AKGFVGKNLKADLTSTTDHHIFEVH------------------------------RQTKE 37
Query: 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMII-VQGAKNVVTACRECKVRRLVYNSTAD 134
+++ L A + ++ +N + + + V +V+ + + S++
Sbjct: 38 EELESALLKADFIVHLAG--VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSS- 94
Query: 135 VVFDGSHDIHNGDET---LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
I + + K Q E L+ G R N+F
Sbjct: 95 --------IQATQDNPYGES------------KLQGEQLLREYAEEYGNTVYIYRWPNLF 134
Query: 192 GPG----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
G ++ + YV+++ A E +
Sbjct: 135 GKWCKPNYNSVIATFCYKIARNEE-IQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIE-- 191
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
+ N+ + + + ++ + +
Sbjct: 192 --NGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD 228
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 33/233 (14%), Positives = 65/233 (27%), Gaps = 46/233 (19%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+L G + + L LL + + + P+ + R +
Sbjct: 9 TILGAAGQIAQXLTATLLTYTDMHITL--------YGRQLKTRIPPEIIDHERVTVIEGS 60
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
++ +++ + A VF M ++V A +RR++ S
Sbjct: 61 FQNPGXLEQAVTNAEVVF-------------VGAMESGSDMASIVKALSRXNIRRVIGVS 107
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
A + S + E T + + QA ++ L LR + ++
Sbjct: 108 MAGL----SGEFPVALEKWTFDNLPISYVQG-ERQARNVL----RESNLNYTILRLTWLY 158
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV--ENVAHAHVCAAEALD 242
P T + + + V E V A A D
Sbjct: 159 ND--------------PEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAAD 197
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 45/319 (14%), Positives = 93/319 (29%), Gaps = 65/319 (20%)
Query: 6 AIPRTCVVL--NGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSL 60
+P +VL GFV +V +LLE G + R S+ +L
Sbjct: 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR----------SASKLANLQKRWD 56
Query: 61 SSGRAEYHQVDVRDISQ---IKKVLEGASTVFYVDATDLNTDDFYNCYMII--VQGAKNV 115
+ + V D+ + +V++GA+ V ++ A+ ++ + Y+ ++ + G N
Sbjct: 57 AKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHI-ASVVSFSNKYD-EVVTPAIGGTLNA 114
Query: 116 VTACRECK-VRRLVYNSTADVVFDGSHDIHNG--------DETLTCCWKFQDLMCDL--- 163
+ A V+R V S+ ++ E++ +
Sbjct: 115 LRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLW 174
Query: 164 -----KAQAE--ALVLFANNIDGLLTCALRPSNVFGP---------GDTQLVPLLVNLAK 207
K +AE A N A+ P+ G + + L N
Sbjct: 175 VYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEV 234
Query: 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFL 267
+ + ++ H+ + + T + L
Sbjct: 235 SPALALMPPQY-----YVSAVDIGLLHLGCLVL-----PQIERRRVYGTA-GTFDWNTVL 283
Query: 268 SIILEGLGYQRPFIKLPTG 286
+ + P P
Sbjct: 284 ATFRK----LYPSKTFPAD 298
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 56/400 (14%), Positives = 115/400 (28%), Gaps = 100/400 (25%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAE 66
+ ++L GF+G L R+LE V D T L D + R
Sbjct: 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLG-----------DLVKHERMH 72
Query: 67 YHQVDVRDISQIKKVLEG-----------ASTVFY----VDATDLNTDDFYNCYMIIVQG 111
+ + D+ + + A+ Y + +L+ +
Sbjct: 73 FFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELD-----------FEA 121
Query: 112 AKNVVTACRECKVRRL------VYNSTADVVFDGSHDIHNG----------DETLTCCWK 155
+V + + + VY AD FD +
Sbjct: 122 NLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACS------ 175
Query: 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP----------GDTQLVPLLVNL 205
K + ++ + ++GL RP N GP G +++V +
Sbjct: 176 --------KQLMDRVI-WGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGH 226
Query: 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN-LEPIKFW 264
G ++ G FTYV++ A + E + G + I N
Sbjct: 227 IVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVAT---GKIYNIGNPNNNFSVR 283
Query: 265 DFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324
+ + +LE + V ++ + G + R
Sbjct: 284 ELANKMLELAAEFPEYADSAKRVK--LVETTSGAYYGNG--------------YQDVQNR 327
Query: 325 TFDCIAAQKHIGYSPVVSLEEGVSSTIQSF-SHLARDSSL 363
+ +G++P + ++ + +++ H+A +L
Sbjct: 328 VPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVADARAL 367
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 30/122 (24%)
Query: 18 GFVGRSLVLRLLELG----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR 73
G + R ++ +L + R P++ + P ++ DV
Sbjct: 33 GQIARHVINQLADKQTIKQTLFAR----------QPAKIHKPYPT-----NSQIIMGDVL 77
Query: 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ + +K+ ++G V+ L +D + A +V+ A + C V+RL++ +
Sbjct: 78 NHAALKQAMQGQDIVYAN----LTGED-------LDIQANSVIAAMKACDVKRLIFVLSL 126
Query: 134 DV 135
+
Sbjct: 127 GI 128
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 59/351 (16%), Positives = 109/351 (31%), Gaps = 54/351 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF G L L L +G V L SL + + + D+RD ++
Sbjct: 19 GFKGGWLSLWLQTMG---ATVK----GYSLTAPTVPSLFETARVADGMQSEIGDIRDQNK 71
Query: 78 IKKVLEGA--STVFYVDATDLNTD---DFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
+ + + VF++ A L + Y V G ++ A R + V N T
Sbjct: 72 LLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT 131
Query: 133 ADVVFDGSHDIHNGDETL----TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCAL 185
+D +D I E + +L + F G +
Sbjct: 132 SDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATV 191
Query: 186 RPSNVFGPGDTQLVPLLVNLAKPGWTK--FIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
R NV G GD L ++ ++ + II + + + +V ++ A+ L +
Sbjct: 192 RAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYT 251
Query: 244 RMVSVAGMAF-FITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
A + F N + + +++ G + + HE
Sbjct: 252 DGAEYAE-GWNFGPNDADATPVKNIVEQMVKYWG----------EGASWQLDGNAHPHEA 300
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
L+ L DC A+ +G+ P +L + +
Sbjct: 301 HYLK-----L---------------DCSKAKMQLGWHPRWNLNTTLEYIVG 331
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 11/114 (9%), Positives = 35/114 (30%), Gaps = 18/114 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G + + + + + + Q+D +
Sbjct: 10 GHLGTHITNQAIANHIDHFHIGVR------NVEKVPDDWRGK-----VSVRQLDYFNQES 58
Query: 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ + +G TV ++ + + + +N+V A ++ V +++
Sbjct: 59 MVEAFKGMDTVVFIPSIIHPSFKR-------IPEVENLVYAAKQSGVAHIIFIG 105
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 35/255 (13%), Positives = 81/255 (31%), Gaps = 45/255 (17%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G++GR + L+LG +VR + + ++ L +S + A + D
Sbjct: 14 GYIGRHVAKASLDLGHPTFLLVR----ESTASSNSEKAQLL--ESFKASGANIVHGSIDD 67
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + + ++ V + + ++ N++ A +E + + S
Sbjct: 68 HASLVEAVKNVDVVISTVGS------------LQIESQVNIIKAIKEVGTVKRFFPSE-- 113
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
D + + ++KA+ + + SN F
Sbjct: 114 ---------FGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEG-----IPYTYVSSNCFAGY 159
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS-----RMVSVA 249
+ + A P I+G G F E++ +A+D + + +
Sbjct: 160 FLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTF---TIKAVDDPRTLNKTLYLR 216
Query: 250 GMAFFITNLEPIKFW 264
A ++ E + W
Sbjct: 217 LPANTLSLNELVALW 231
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-06
Identities = 50/311 (16%), Positives = 83/311 (26%), Gaps = 65/311 (20%)
Query: 18 GFVGRSLVLRLLELGK------CIVRVTDSTQSLQ------LDPSESNSLLPDSLSSGRA 65
GF+GR LVL LL C+VR + + L++ R
Sbjct: 83 GFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRL 142
Query: 66 EYHQVDVR------DISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIV 109
E D D +++ E + Y + N V
Sbjct: 143 EVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPN-----------V 191
Query: 110 QGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------ 163
G ++ K++ Y STADV D + + +
Sbjct: 192 AGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGT 251
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGPGD-------TQLVPLLVNLAK-------- 207
K E L+ AN++ L R + + V +V
Sbjct: 252 SKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRS 311
Query: 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN--LEPIKFWD 265
D V VA A A + + + N + I +
Sbjct: 312 FYEPDSEGNRQRAHFDGLPVTFVAEAIAVLG-ARVAGSSLAGFATYHVMNPHDDGIGLDE 370
Query: 266 FLSIILEGLGY 276
++ ++E GY
Sbjct: 371 YVDWLIE-AGY 380
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 5e-06
Identities = 35/258 (13%), Positives = 75/258 (29%), Gaps = 34/258 (13%)
Query: 12 VVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+++ G G++G+ +V + LG + R + + +L G A+
Sbjct: 8 LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNI------DKVQMLLYFKQLG-AKLI 60
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ + D ++ L+ V A + + + +V A +E +
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHH--------ILEQLKLVEAIKEAGNIKRF 112
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S F G F D +A A + + +
Sbjct: 113 LPSE----F-GMDPDIMEHALQPGSITFIDKRKVRRAIEAA---------SIPYTYVSSN 158
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH--AHVCAAEALDSRMV 246
G L L ++ P I G G + ++V ++ +
Sbjct: 159 MFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTM 218
Query: 247 SVAGMAFFITNLEPIKFW 264
+ ++ E I+ W
Sbjct: 219 YIRPPMNILSQKEVIQIW 236
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 56/392 (14%), Positives = 114/392 (29%), Gaps = 87/392 (22%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
++L GF+G L RLL V LD + L+ + +
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYG--------LDIGSDA--ISRFLNHPHFHFVEG 52
Query: 71 DVRDISQIKKVLEG-----------ASTVFY----VDATDLNTDDFYNCYMIIVQGAKNV 115
D+ S+ + A+ + Y + +L+ + +
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELD-----------FEENLRI 101
Query: 116 VTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC---------WKFQDLMC--DLK 164
+ C + + +R+++ ST++V G DE + W K
Sbjct: 102 IRYCVKYR-KRIIFPSTSEVY--GMCSDKYFDEDHSNLIVGPVNKPRW------IYSVSK 152
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP----------GDTQLVPLLVNLAKPGWTKFI 214
+ ++ +GL RP N GP G ++ + L+ G +
Sbjct: 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKL 212
Query: 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP-IKFWDFLSIILEG 273
I G+ FT + + A +++ G I N E + ++L
Sbjct: 213 IDGGKQKRCFTDIRDGIEALY---RIIENAGNRCDGEIINIGNPENEASIEELGEMLLAS 269
Query: 274 LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQK 333
P + ++ S S R A +
Sbjct: 270 FEKHPLRHHFPPFAGFRVV----------------ESSSYYGKGYQDVEHRKPSIRNAHR 313
Query: 334 HIGYSPVVSLEEGVSSTIQSF-SHLARDSSLA 364
+ + P + ++E + T+ F + +
Sbjct: 314 CLDWEPKIDMQETIDETLDFFLRTVDLTDKPS 345
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 44/261 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++L G +GR +V ++ G + T + ++ + D+ S + D
Sbjct: 6 LILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI--DNYQSLGVILLEGD 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D + K ++ V + A ++++ ++ A +E + + S
Sbjct: 64 INDHETLVKAIKQVDIV--ICAAG----------RLLIEDQVKIIKAIKEAGNVKKFFPS 111
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS--- 188
D + + + KA ++ G+ L
Sbjct: 112 -----------EFGLDVDRHDAVEPVRQVFEEKASIRRVIEAE----GVPYTYLCCHAFT 156
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS----- 243
F Q + + I+G G + +V A +
Sbjct: 157 GYFLRNLAQ--LDATDPPRDKVV--ILGDGNVKGAYVTEADVGTF---TIRAANDPNTLN 209
Query: 244 RMVSVAGMAFFITNLEPIKFW 264
+ V + ++T E I W
Sbjct: 210 KAVHIRLPKNYLTQNEVIALW 230
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 26/133 (19%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+T V+ G G SL+ +G + V + +L +
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL------------QAIPN 52
Query: 65 AEYHQVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC- 122
Q + + + + + EGA F T D + K++ A +
Sbjct: 53 VTLFQGPLLNNVPLMDTLFEGAHLAFIN--TTSQAGD-------EIAIGKDLADAAKRAG 103
Query: 123 KVRRLVYNSTADV 135
++ +Y+S D
Sbjct: 104 TIQHYIYSSMPDH 116
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+ V G +G ++ LL+ IVR + ++++L
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR----------NVEKASTLADQG----- 46
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
E D ++K G S + ++ + ++ NVV A R+ V
Sbjct: 47 VEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTL-------LIVQHANVVKAARDAGV 99
Query: 125 RRLVYNSTADV 135
+ + Y A
Sbjct: 100 KHIAYTGYAFA 110
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 179 GLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+ +LR +NV GP +P K G F + + DF + + +
Sbjct: 175 DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFC---SDTVRDFLDMSDFLAIADLS 231
Query: 238 AEA 240
+
Sbjct: 232 LQE 234
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 30/134 (22%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE------ 66
+ G G +G +L+ L G I+ + D+ ++G+ E
Sbjct: 25 ITGGAGCLGSNLIEHWLPQGHEILVI-------------------DNFATGKREVLPPVA 65
Query: 67 ---YHQVDVRDISQIKKVLEGAS--TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+ V D +++ + V + A + DD+ VQG+ NV A +
Sbjct: 66 GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASK 125
Query: 122 CKVRRLVYNSTADV 135
V+RL+ TA
Sbjct: 126 AGVKRLLNFQTALC 139
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 34/134 (25%)
Query: 18 GFVGRSLVLRLLELGK-----CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
G +G ++ L++ IVR +P+++ +L Q D
Sbjct: 9 GQLGHYVIESLMKTVPASQIVAIVR----------NPAKAQALAAQG-----ITVRQADY 53
Query: 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS- 131
D + + L+G + + ++++ +NV+ A + V+ + Y S
Sbjct: 54 GDEAALTSALQGVEKLLLISSSEVGQR---------APQHRNVINAAKAAGVKFIAYTSL 104
Query: 132 ----TADVVFDGSH 141
T+ + H
Sbjct: 105 LHADTSPLGLADEH 118
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 73/385 (18%), Positives = 117/385 (30%), Gaps = 97/385 (25%)
Query: 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
E + ++ G GFVG L +L+ G + V D+ +GR
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVV-------------------DNFFTGR 64
Query: 65 A------------EYHQVDVRD-----ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMI 107
E DV + + QI + AS Y+ +
Sbjct: 65 KRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMY-------NPIKTLKT 117
Query: 108 IVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET---LTCCWKFQDLMCDLK 164
G N++ + R L+ ST++V G ++H E + + K
Sbjct: 118 NTIGTLNMLGLAKRVGAR-LLLASTSEVY--GDPEVHPQSEDYWGHVNPIGPRACYDEGK 174
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGPG----DTQLVPLLVNLAKPGWTKFIIGSGEN 220
AE + +G+ R N FGP D ++V + A G + GSG
Sbjct: 175 RVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQ 234
Query: 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF 280
F YV ++ L + M S + N E +F +I +G
Sbjct: 235 TRAFQYVSDLV-------NGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEI 287
Query: 281 IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS---RTRTFDCIAAQKHIGY 337
L A + R D A+ +G+
Sbjct: 288 QFLS----------------------------------EAQDDPQKRKPDIKKAKLMLGW 313
Query: 338 SPVVSLEEGVSSTIQSFSHLARDSS 362
PVV LEEG++ I F +
Sbjct: 314 EPVVPLEEGLNKAIHYFRKELEYQA 338
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 30/260 (11%), Positives = 69/260 (26%), Gaps = 43/260 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
++ GF+G+ + L+ + + R S S + + +L A
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYILARPGPR--------SPSKAKIFKALEDKGAIIV 65
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ + ++K+L+ V + + +V A + +
Sbjct: 66 YGLINEQEAMEKILKEHEIDIVVSTVGGES----------ILDQIALVKAMKAVGTIKRF 115
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN--IDGLLTCALR 186
S + + + G + + L ++ N +
Sbjct: 116 LPSEFGHDVNRADPVEPGLNMYREKRRVRQL---VEESGIPFTYICCNSIASWPYYNNIH 172
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS--R 244
PS V P D I G G + F ++ + + + + +
Sbjct: 173 PSEVLPPTDFFQ---------------IYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNK 217
Query: 245 MVSVAGMAFFITNLEPIKFW 264
V + E W
Sbjct: 218 SVHFRPSCNCLNINELASVW 237
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.98 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.97 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.96 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.96 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.96 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.96 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.94 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.94 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.92 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.92 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.92 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.92 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.91 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.91 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.91 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.91 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.9 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.9 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.9 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.9 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.89 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.89 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.89 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.89 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.89 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.89 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.89 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.89 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.89 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.89 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.88 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.88 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.88 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.88 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.88 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.88 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.88 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.88 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.88 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.88 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.88 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.88 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.88 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.87 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.87 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.87 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.87 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.87 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.87 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.87 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.87 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.87 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.87 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.87 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.87 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.87 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.87 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.87 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.87 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.87 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.86 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.86 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.86 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.86 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.86 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.86 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.86 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.86 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.86 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.86 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.86 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.86 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.86 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.86 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.86 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.86 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.86 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.86 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.86 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.85 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.85 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.85 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.85 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.85 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.85 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.85 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.85 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.85 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.85 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.85 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.85 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.85 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.85 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.85 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.85 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.85 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.85 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.85 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.85 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.85 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.85 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.85 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.85 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.85 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.85 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.85 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.85 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.85 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.85 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.85 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.84 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.84 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.84 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.84 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.84 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.84 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.84 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.84 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.84 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.84 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.84 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.84 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.84 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.84 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.84 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.84 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.84 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.84 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.83 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.83 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.83 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.83 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.83 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.83 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.83 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.83 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.83 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.83 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.83 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.83 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.83 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.83 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.83 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.82 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.82 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.82 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.82 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.82 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.82 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.82 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.82 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.82 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.82 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.82 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.82 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.81 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.81 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.81 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.81 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.81 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.81 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.81 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.81 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.81 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.8 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.8 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.8 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.8 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.8 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.8 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.8 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.8 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.8 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.8 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.8 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.8 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.8 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.8 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.79 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.79 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.79 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.79 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.79 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.79 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.79 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.78 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.78 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.78 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.77 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.77 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.77 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.77 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.77 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.77 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.76 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.76 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.76 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.76 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.76 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.75 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.75 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.73 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.73 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.73 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.72 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.7 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.7 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.69 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.69 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.68 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.68 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.68 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.68 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.68 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.67 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.65 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.63 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.61 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.58 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.57 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.57 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.52 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.48 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.33 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.3 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.27 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.25 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.25 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.21 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.21 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.2 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.19 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.09 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.07 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.96 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.83 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.82 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.82 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.71 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.64 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.53 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.47 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.46 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.38 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.38 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.34 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.33 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.28 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.22 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.18 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.12 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.11 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.08 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.99 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.89 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.87 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.87 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.83 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.79 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.72 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.68 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.61 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.56 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.51 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.46 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.38 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.35 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.33 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.25 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.21 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.19 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.12 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.11 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.09 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.09 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.08 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.07 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.07 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.03 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.02 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.99 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.99 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.91 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.87 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.77 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.76 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.75 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.73 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.7 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.7 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.69 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.65 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.64 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.6 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.58 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.57 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.57 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.55 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.47 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.46 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.45 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.41 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.4 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.38 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.36 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.31 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.31 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.26 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.26 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.24 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.23 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.23 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.23 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.22 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 96.2 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.18 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.16 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.12 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.05 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.05 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.04 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.99 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 95.97 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 95.96 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.96 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 95.96 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.95 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.94 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.93 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.92 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.88 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.86 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.86 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 95.84 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 95.84 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.8 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.77 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.77 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.76 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.75 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.72 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 95.71 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.7 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 95.7 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.66 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 95.66 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.63 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 95.61 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.57 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.53 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.49 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.45 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.45 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 95.44 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.44 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 95.41 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 95.39 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 95.37 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.35 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.34 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.34 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.32 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.31 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.29 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.22 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.16 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 95.14 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.13 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.1 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.09 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 95.07 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.07 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 95.06 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.06 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.04 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.98 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.98 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.96 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.94 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 94.93 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 94.92 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.87 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 94.86 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 94.84 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.79 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 94.78 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 94.78 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 94.77 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.74 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.72 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 94.71 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.71 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.7 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 94.66 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 94.64 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.6 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.6 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 94.58 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.52 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.38 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 94.38 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.36 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.36 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 94.32 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.3 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 94.27 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 94.25 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.25 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 94.24 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 94.22 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.2 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 94.19 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.17 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.17 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 94.16 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.09 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 94.08 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 94.05 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 94.04 |
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=371.41 Aligned_cols=297 Identities=15% Similarity=0.146 Sum_probs=252.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+|+|||||||||||++|+++|+++| ++|++++|++. ... ..+++++.+|++ ++++.++++++|
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~-----------~~~---~~~~~~~~~Dl~-~~~~~~~~~~~d 64 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIG-----------NKA---INDYEYRVSDYT-LEDLINQLNDVD 64 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCC-------------------CCEEEECCCC-HHHHHHHTTTCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCC-----------ccc---CCceEEEEcccc-HHHHHHhhcCCC
Confidence 46899999999999999999999999 59999999843 111 127899999999 999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+|||+|+..... ++...+++|+.++.+++++|++.+++|+||+||.++|+.. ...+.+|++ +..|.+.|+.+|..
T Consensus 65 ~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~--~~~~~~E~~--~~~p~~~Y~~sK~~ 139 (311)
T 3m2p_A 65 AVVHLAATRGSQ-GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDE--TSLPWNEKE--LPLPDLMYGVSKLA 139 (311)
T ss_dssp EEEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCG--GGCSBCTTS--CCCCSSHHHHHHHH
T ss_pred EEEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCC--CCCCCCCCC--CCCCCchhHHHHHH
Confidence 999999965544 7788999999999999999999999999999999999643 345778887 56788999999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~ 244 (467)
+|++++.++++.|++++++||+.+|||+.. .+++.++..+..|.++.++|++++.++|+|++|+|++++.+++
T Consensus 140 ~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~----- 214 (311)
T 3m2p_A 140 CEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALK----- 214 (311)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHh-----
Confidence 999999998878999999999999999877 6788899999999998888999999999999999999999987
Q ss_pred cccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccce
Q 012270 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324 (467)
Q Consensus 245 ~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (467)
.+. .+++||+++++++|+.|+++.+.+.+|.+.+....|.+ .+ ......
T Consensus 215 ~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------------~~--------~~~~~~ 263 (311)
T 3m2p_A 215 QEK-VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPN----------------------AN--------EGIHSS 263 (311)
T ss_dssp CTT-CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSS----------------------BC--------CSCCCB
T ss_pred cCC-CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCC----------------------CC--------CCcCce
Confidence 333 78899999999999999999999999988765544421 00 011346
Q ss_pred EeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 325 TFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 325 ~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
.+|++|++++|||+|+++++|+++++++|+++....
T Consensus 264 ~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 299 (311)
T 3m2p_A 264 YMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDDV 299 (311)
T ss_dssp CBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC----
T ss_pred ecCHHHHHHHhCCCcccCHHHHHHHHHHHHHhcccC
Confidence 789999999999999999999999999999886543
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=377.92 Aligned_cols=314 Identities=20% Similarity=0.240 Sum_probs=254.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC---CCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS---SGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
++|+|||||||||||++|+++|+++| ++|++++|........... +..... .++++++.+|++|++++.++++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDE---VKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHH---HHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhhh---hhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 56899999999999999999999999 5999999976521100000 000000 0579999999999999999999
Q ss_pred CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||.. ...+.+|++ +..|.+.|
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~--~~~~~~E~~--~~~p~~~Y 175 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDH--PALPKVEEN--IGNPLSPY 175 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTC--CCSSBCTTC--CCCCCSHH
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCC--CCCCCccCC--CCCCCChh
Confidence 9999999999532 3456778999999999999999999999999999999999644 345788888 45888999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~ 234 (467)
+.+|..+|++++.++++.|++++++||+.+|||+.. .+++.++..+..+.++.++|++++.++|+|++|+|+++
T Consensus 176 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~ 255 (351)
T 3ruf_A 176 AVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 255 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHH
Confidence 999999999999988778999999999999999764 35788888888899889999999999999999999999
Q ss_pred HHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchH
Q 012270 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSAC 314 (467)
Q Consensus 235 ~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 314 (467)
+.+++. .+...+++||+++++++|+.|+++.+.+.+|.+......+... . .. .+
T Consensus 256 ~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------------~----~~---~~ 309 (351)
T 3ruf_A 256 ILSALA----KDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKY---------------R----EF---RS 309 (351)
T ss_dssp HHHHTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EE---------------E----CC---CT
T ss_pred HHHHhh----ccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccc---------------c----CC---CC
Confidence 999872 1356789999999999999999999999999854332222100 0 00 00
Q ss_pred HHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 315 YIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 315 ~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
. ......+|++|++++|||+|+++++++++++++|++++.
T Consensus 310 ~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 349 (351)
T 3ruf_A 310 G----DVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349 (351)
T ss_dssp T----CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred C----ccceeeeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 0 012456899999999999999999999999999998764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=372.56 Aligned_cols=309 Identities=17% Similarity=0.167 Sum_probs=253.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.++|+|||||||||||++|+++|+++|+ ++|++++|...... .. .+......++++++.+|++|++++.+++++
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LN---NVKSIQDHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GG---GGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hh---hhhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence 3568999999999999999999999994 37888887653111 00 122233346899999999999999999987
Q ss_pred --CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 85 --ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 85 --~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+... ...+.+|++ +..|.+.
T Consensus 97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~-~~~~~~E~~--~~~p~~~ 173 (346)
T 4egb_A 97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLG-KTGRFTEET--PLAPNSP 173 (346)
T ss_dssp HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCC-SSCCBCTTS--CCCCCSH
T ss_pred cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCC-cCCCcCCCC--CCCCCCh
Confidence 999999999543 44677889999999999999999999999999999999997543 345788887 5588899
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
|+.+|..+|++++.++++.|++++++||+.+|||+.. .+++.++..+..+.++.+++++++.++|||++|+|++++.+
T Consensus 174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999999998878999999999999999864 57788888899999888999999999999999999999999
Q ss_pred HHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCcc-CChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-LPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~-ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
++. +. .|++||+++++++|+.|+++.+.+.+|.+.+.+. .+.. +
T Consensus 254 ~~~-----~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-----------------------~------ 298 (346)
T 4egb_A 254 LHK-----GR-VGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDR-----------------------L------ 298 (346)
T ss_dssp HHH-----CC-TTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC-------------------------------
T ss_pred Hhc-----CC-CCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCC-----------------------C------
Confidence 983 33 7789999999999999999999999998754222 1110 0
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.....+.+|++|++++|||+|+++++|+|+++++|++++..
T Consensus 299 --~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 339 (346)
T 4egb_A 299 --GHDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWYEKNEE 339 (346)
T ss_dssp --CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHH
T ss_pred --CCcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 00123568999999999999999999999999999988654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=370.61 Aligned_cols=295 Identities=20% Similarity=0.185 Sum_probs=254.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++|+|||||||||||++|+++|+++| ++|++++|.+.. .+++++.+|++|++++.++++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-----------------~~~~~~~~Dl~d~~~~~~~~~~~ 78 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG-----------------TGGEEVVGSLEDGQALSDAIMGV 78 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS-----------------SCCSEEESCTTCHHHHHHHHTTC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC-----------------CCccEEecCcCCHHHHHHHHhCC
Confidence 356899999999999999999999999 599999997651 46889999999999999999999
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.+|||.......+.+|+. +..|.+.|+.+|
T Consensus 79 d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~--~~~~~~~Y~~sK 156 (347)
T 4id9_A 79 SAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDH--PLCPNSPYGLTK 156 (347)
T ss_dssp SEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTS--CCCCCSHHHHHH
T ss_pred CEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCC--CCCCCChHHHHH
Confidence 99999999543 334458899999999999999999999999999999999976445556788887 557889999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcc-------------cCCC-------------CCcHHHHHHHhcCCCceEEecCC
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVF-------------GPGD-------------TQLVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~-------------G~~~-------------~~~~~~~~~~~~~g~~~~~~g~g 218 (467)
..+|++++.++++.|++++++||+.+| ||+. ..+++.++..+..|.++.+++++
T Consensus 157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (347)
T 4id9_A 157 LLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARN 236 (347)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCC
Confidence 999999999988789999999999999 8863 34677788888899988899999
Q ss_pred Cccccc----cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHH
Q 012270 219 ENMSDF----TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294 (467)
Q Consensus 219 ~~~~~~----i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~ 294 (467)
++.++| +|++|+|++++.+++ .+...|++||+++++++|+.|+++.+.+.+|.+.+...+|.+
T Consensus 237 ~~~~~~~~~~i~v~Dva~ai~~~~~-----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-------- 303 (347)
T 4id9_A 237 ENGRPFRMHITDTRDMVAGILLALD-----HPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD-------- 303 (347)
T ss_dssp TTCCBCEECEEEHHHHHHHHHHHHH-----CGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC--------
T ss_pred CcccCCccCcEeHHHHHHHHHHHhc-----CcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc--------
Confidence 999999 999999999999998 344568899999999999999999999999987655444421
Q ss_pred HHHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 295 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
+ ....+|++|++++|||+|+++++|+++++++|++++..
T Consensus 304 ---------------~-----------~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 342 (347)
T 4id9_A 304 ---------------G-----------VYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLA 342 (347)
T ss_dssp ---------------C-----------CBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_pred ---------------c-----------cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 1 13568999999999999999999999999999998653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=368.28 Aligned_cols=319 Identities=15% Similarity=0.168 Sum_probs=247.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|+||||||+||||++++++|+++| ++|++++|++... +.+...+++++.+|++|++++.++++++|
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~-----------~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d 79 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQI-----------QRLAYLEPECRVAEMLDHAGLERALRGLD 79 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCG-----------GGGGGGCCEEEECCTTCHHHHHHHTTTCS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhh-----------hhhccCCeEEEEecCCCHHHHHHHHcCCC
Confidence 45799999999999999999999999 5999999976521 00112378999999999999999999999
Q ss_pred EEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCC----CChHH
Q 012270 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF----QDLMC 161 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~----~~~Y~ 161 (467)
+|||+|+... +..++...+++|+.++.+++++|++.+++|+||+||.++|+.......+ +|++| ..| .+.|+
T Consensus 80 ~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~~--~~p~~~~~~~Y~ 156 (342)
T 2x4g_A 80 GVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGLF--YDSLPSGKSSYV 156 (342)
T ss_dssp EEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTCC--CSSCCTTSCHHH
T ss_pred EEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCCC--CCccccccChHH
Confidence 9999999543 3456788999999999999999999999999999999999754432234 78774 456 78999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-C-CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-T-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~-~-~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
.+|..+|++++.++.. |++++++||+.+|||+. + . ++.++..+..|....+ +++.++|+|++|+|++++.+++
T Consensus 157 ~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 157 LCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHh
Confidence 9999999999998876 99999999999999986 3 3 5667777777776544 4678899999999999999998
Q ss_pred HhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 012270 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (467)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (467)
. +.. |++||+++++ +|+.|+++.+.+.+|.+.+. .+|.+.....+.+.+++....+ ..|.+.+.....
T Consensus 232 ~-----~~~-g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 299 (342)
T 2x4g_A 232 R-----GRI-GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSG----QLPLLDETAIEV 299 (342)
T ss_dssp H-----SCT-TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC--------------------CC
T ss_pred C-----CCC-CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhC----CCCCCCHHHHHH
Confidence 3 333 7899999999 99999999999999998777 8999888777766666554433 223333332333
Q ss_pred hccceEeehhhHhhhCCC-ccccChHHHHHHHHHHHHHhh
Q 012270 320 ASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 320 ~~~~~~~d~~k~~~~lG~-~p~~~l~e~i~~~i~~~~~~~ 358 (467)
+.....+|++|++++||| +| ++++|+++++++|++++.
T Consensus 300 ~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 300 MAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp TTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred HhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 345677899999999999 99 799999999999998753
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=375.24 Aligned_cols=317 Identities=16% Similarity=0.175 Sum_probs=250.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCC-CHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~ 83 (467)
.+||+|||||||||||++|+++|+++ | ++|++++|++.. .......++++++.+|++ |.+.+.++++
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~----------~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~ 90 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQTDR----------LGDLVKHERMHFFEGDITINKEWVEYHVK 90 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESCCTT----------TGGGGGSTTEEEEECCTTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCChhh----------hhhhccCCCeEEEeCccCCCHHHHHHHhc
Confidence 35789999999999999999999999 8 599999997651 112222468999999999 9999999999
Q ss_pred CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc----C-CC
Q 012270 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----C-WK 155 (467)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~----~-~~ 155 (467)
++|+|||+|+... ...++...+++|+.++.+++++|++.+ +||||+||.+|||... ..+.+|+++. + ..
T Consensus 91 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~--~~~~~e~~~~~~~~p~~~ 167 (372)
T 3slg_A 91 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCA--DEQFDPDASALTYGPINK 167 (372)
T ss_dssp HCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCC--CSSBCTTTCCEEECCTTC
T ss_pred cCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCC--CCCCCccccccccCCCCC
Confidence 9999999999544 235678899999999999999999999 9999999999997543 2355565521 1 15
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC----------cHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----------LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 156 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~----------~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
|.+.|+.+|..+|++++.++.+ |++++++||+++|||+... +++.++..+..+.++.+++++++.++|+
T Consensus 168 p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 246 (372)
T 3slg_A 168 PRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFT 246 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECE
T ss_pred CCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEE
Confidence 6679999999999999999887 9999999999999998642 6778888888899888999999999999
Q ss_pred chhHHHHHHHHHHHHhcccccc--CCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHh
Q 012270 226 YVENVAHAHVCAAEALDSRMVS--VAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~--~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~ 302 (467)
|++|+|++++.+++ .+. ..|++||++++ +++|+.|+++.+.+.+|.+.+....|...
T Consensus 247 ~v~Dva~a~~~~~~-----~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------- 306 (372)
T 3slg_A 247 YVDDGISALMKIIE-----NSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRV--------------- 306 (372)
T ss_dssp EHHHHHHHHHHHHH-----CGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTC---------------
T ss_pred EHHHHHHHHHHHHh-----cccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccc---------------
Confidence 99999999999998 333 57899999995 89999999999999999875543222100
Q ss_pred cccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 303 ~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.........+.... ........+|++|++++|||+|+++++|+|+++++|++++.
T Consensus 307 ~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 361 (372)
T 3slg_A 307 KLVETTSGAYYGNG-YQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHV 361 (372)
T ss_dssp CEEEC--------------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCH
T ss_pred eeeeccccccccCC-ccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00000000000000 01123456799999999999999999999999999998754
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=361.14 Aligned_cols=303 Identities=20% Similarity=0.223 Sum_probs=242.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
||+||||||+||||++|+++|+++| +.|.+..|.... ......+++++.+|++| +++.++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~------------~~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGN------------EEFVNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCC------------GGGSCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCC------------hhhcCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 5789999999999999999999999 455554443320 01124578999999999 999999999999
Q ss_pred EEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 88 VFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 88 Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
|||+|+.. .+..++...+++|+.++.+++++|++.+++|+||+||.++||.. ...+.+|+. +..|.+.|+.+|
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~--~~~~~~E~~--~~~~~~~Y~~sK 142 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEA--KVIPTPEDY--PTHPISLYGASK 142 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSC--SSSSBCTTS--CCCCCSHHHHHH
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcC--CCCCCCCCC--CCCCCCHHHHHH
Confidence 99999943 35577899999999999999999999999999999999999643 345778887 557889999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCC-CceEEecCCCccccccchhHHHHHHHHHHHHhc
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPG-WTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~~g-~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~ 242 (467)
..+|++++.++.+.|++++++||+.+|||++. ..++.++..+..+ .++.+++++++.++|+|++|+|++++.+++
T Consensus 143 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~--- 219 (313)
T 3ehe_A 143 LACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR--- 219 (313)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhc---
Confidence 99999999998888999999999999999865 4566666665555 566788999999999999999999999986
Q ss_pred cccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 012270 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (467)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 322 (467)
+...+++||+++++++|+.|+++.+.+.+|.+.+....|... ..+ .. ..
T Consensus 220 ---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------------~~~---~~-----~~ 268 (313)
T 3ehe_A 220 ---GDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDR--------------------GWK---GD-----VP 268 (313)
T ss_dssp ---CCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC---------------------------------------
T ss_pred ---cCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCcc--------------------CCc---cc-----cc
Confidence 345678999999999999999999999999875433322110 000 00 11
Q ss_pred ceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhcccc
Q 012270 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSL 363 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~~~~ 363 (467)
...+|++|+++ |||+|+++++|+|+++++|++++..+..+
T Consensus 269 ~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~~~~~~~ 308 (313)
T 3ehe_A 269 VMLLSIEKLKR-LGWKPRYNSEEAVRMAVRDLVEDLDEEGH 308 (313)
T ss_dssp -CCBCCHHHHH-HTCCCSCCHHHHHHHHHHHHHHHHHC---
T ss_pred eeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhCcccccc
Confidence 24579999965 99999999999999999999998766443
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=362.04 Aligned_cols=305 Identities=24% Similarity=0.292 Sum_probs=244.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|||||||||||++|+++|+++| ++|++++|.+... ......+++++.+|+.|.+ +.+++++ |+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~v 66 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGR-----------REFVNPSAELHVRDLKDYS-WGAGIKG-DVV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSCC-----------GGGSCTTSEEECCCTTSTT-TTTTCCC-SEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCCc-----------hhhcCCCceEEECccccHH-HHhhcCC-CEE
Confidence 689999999999999999999999 5999999976511 1112467899999999998 8888888 999
Q ss_pred EEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 012270 89 FYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (467)
Q Consensus 89 ih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~ 165 (467)
||+|+.. ....++...+++|+.++.+++++|++.+++|+||+||.++||.. ...+.+|+. +..|.+.|+.+|.
T Consensus 67 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~--~~~~~~e~~--~~~p~~~Y~~sK~ 142 (312)
T 3ko8_A 67 FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDA--DVIPTPEEE--PYKPISVYGAAKA 142 (312)
T ss_dssp EECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSC--SSSSBCTTS--CCCCCSHHHHHHH
T ss_pred EECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCC--CCCCCCCCC--CCCCCChHHHHHH
Confidence 9999943 34567888999999999999999999999999999999999643 345778887 5578899999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCC-CceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPG-WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~~g-~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
.+|++++.++.+.|++++++||+++|||+.. ..+..++..+..+ .++.+++++++.++|+|++|+|++++.+++...
T Consensus 143 ~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~- 221 (312)
T 3ko8_A 143 AGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFE- 221 (312)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhcc-
Confidence 9999999998878999999999999999865 4566666666555 566788999999999999999999999998321
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (467)
.+...+++||+++++++|+.|+++.+.+.+|.+.+...+|.... .. ..+ .....
T Consensus 222 -~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~------------~~-----~~~--------~~~~~ 275 (312)
T 3ko8_A 222 -EMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPD------------GR-----GWP--------GDVKY 275 (312)
T ss_dssp -HSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC-----------------------------------CCCSE
T ss_pred -ccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCcccc------------cc-----CCC--------CCccc
Confidence 13456789999999999999999999999998876555553210 00 000 00123
Q ss_pred eEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 324 ~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
..+|++|++++|||+|+++++|+|+++++|++++.
T Consensus 276 ~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 276 MTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp ECBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 56899999998999999999999999999998754
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=360.08 Aligned_cols=310 Identities=18% Similarity=0.225 Sum_probs=247.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
++|+||||||+||||++++++|+++| ++|++++|.........+. +. .....+++++.+|++|++++.++++ +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIAR---IE-KITGKTPAFHETDVSDERALARIFDAHP 78 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSSCTHHHHH---HH-HHHSCCCEEECCCTTCHHHHHHHHHHSC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEecCCcchHHHHHH---HH-hhcCCCceEEEeecCCHHHHHHHHhccC
Confidence 56899999999999999999999999 5999999976521100000 00 0013478899999999999999998 8
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++||. ....+.+|+. +..|.+.|+
T Consensus 79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~--~~~~~~~e~~--~~~~~~~Y~ 154 (341)
T 3enk_A 79 ITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGV--PERSPIDETF--PLSATNPYG 154 (341)
T ss_dssp CCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCS--CSSSSBCTTS--CCBCSSHHH
T ss_pred CcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecC--CCCCCCCCCC--CCCCCChhH
Confidence 999999999543 335567889999999999999999999999999999999954 3345788887 456889999
Q ss_pred HHHHHHHHHHHhhcCCCC-ceEEEEeCCCcccCCC------------CCcHHHHHHHhcC-CCceEEec------CCCcc
Q 012270 162 DLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGD------------TQLVPLLVNLAKP-GWTKFIIG------SGENM 221 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g-~~~~ilRp~~i~G~~~------------~~~~~~~~~~~~~-g~~~~~~g------~g~~~ 221 (467)
.+|..+|++++.++.+.+ ++++++||+++|||+. ..+++.+...... ..++.++| ++++.
T Consensus 155 ~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 234 (341)
T 3enk_A 155 QTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 234 (341)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCE
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCee
Confidence 999999999999876665 9999999999999964 2345555544433 35566777 88999
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHH
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~ 301 (467)
++|+|++|+|++++.+++... +...+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 235 ~~~i~v~Dva~a~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------------- 296 (341)
T 3enk_A 235 RDYIHVVDLARGHIAALDALE---RRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARR--------------- 296 (341)
T ss_dssp ECEEEHHHHHHHHHHHHHHHH---HHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCC---------------
T ss_pred EeeEEHHHHHHHHHHHHHhhh---cCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCC---------------
Confidence 999999999999999998421 23568899999999999999999999999988665444321
Q ss_pred hcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 302 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
+. ......+|++|++++|||+|+++++|+++++++|++++..
T Consensus 297 --------~~--------~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 297 --------PG--------DVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp --------TT--------CCSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred --------CC--------CccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 00 0123567999999999999999999999999999998643
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=363.86 Aligned_cols=302 Identities=19% Similarity=0.168 Sum_probs=252.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+||+||||||+||||++++++|+++| ++|++++|.+.... .....+++++.+|++|++++.++++++|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-----------~~~~~~v~~~~~Dl~d~~~~~~~~~~~d 95 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHM-----------TEDMFCDEFHLVDLRVMENCLKVTEGVD 95 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSS-----------CGGGTCSEEEECCTTSHHHHHHHHTTCS
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccch-----------hhccCCceEEECCCCCHHHHHHHhCCCC
Confidence 57899999999999999999999999 59999999765211 0113478999999999999999999999
Q ss_pred EEEEcccCCCC----CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCC---CCCCCCCCcccCCCCCCh
Q 012270 87 TVFYVDATDLN----TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH---DIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 87 ~Vih~aa~~~~----~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~---~~~~~~E~~p~~~~~~~~ 159 (467)
+|||+|+.... ..++...+++|+.++.+++++|++.+++||||+||.++|+.... ...+.+|+++.+..|.+.
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~ 175 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 175 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCCh
Confidence 99999995432 56788899999999999999999999999999999999974322 123467776545677889
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCc-eEEecCCCccccccchhHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~------~~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~Dva~ 232 (467)
|+.+|..+|++++.++.+.|++++++||+.+|||+... .++.++..+..+.+ +.+++++++.++|+|++|+|+
T Consensus 176 Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ 255 (379)
T 2c5a_A 176 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHH
Confidence 99999999999999877679999999999999997642 56777777766665 778899999999999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
+++.+++ .+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|.+ ..
T Consensus 256 ai~~~l~-----~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---------------------~~--- 304 (379)
T 2c5a_A 256 GVLRLTK-----SD--FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP---------------------EG--- 304 (379)
T ss_dssp HHHHHHH-----SS--CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC---------------------CC---
T ss_pred HHHHHhh-----cc--CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC---------------------CC---
Confidence 9999998 23 46799999999999999999999999987665545421 00
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.....+|++|++++|||+|+++++|+++++++|++++..
T Consensus 305 --------~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 305 --------VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp --------CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred --------cccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhHh
Confidence 123568999999999999998999999999999988654
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=363.10 Aligned_cols=308 Identities=20% Similarity=0.208 Sum_probs=249.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHh--cCCcEEEEEcCCCCccCCCCcCCCCC--CCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLE--LGKCIVRVTDSTQSLQLDPSESNSLL--PDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~--~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
.++|+||||||+||||++|+++|++ +| ++|++++|..............+ .......+++++.+|++|++++.++
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 86 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL 86 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh
Confidence 3568999999999999999999999 89 59999999764110000000000 1112345789999999999999998
Q ss_pred -HhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 82 -LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 82 -~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
..++|+|||+|+... +..++...+++|+.++.+++++|++.+++ +||+||.++||.... +.+|+. +..|.+.
T Consensus 87 ~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~---~~~E~~--~~~p~~~ 160 (362)
T 3sxp_A 87 EKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA---PNVVGK--NESPENV 160 (362)
T ss_dssp TTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS---SBCTTS--CCCCSSH
T ss_pred hccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC---CCCCCC--CCCCCCh
Confidence 788999999999543 55788999999999999999999999986 999999999965433 788887 5688899
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
|+.+|..+|++++.++.+ ++++++||+++|||+.. .+++.++..+..+.++.+++++++.++|+|++|+|++
T Consensus 161 Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a 238 (362)
T 3sxp_A 161 YGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQA 238 (362)
T ss_dssp HHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHH
Confidence 999999999999999875 89999999999999874 4678888888899988888999999999999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (467)
++.+++ ....| +||+++++++|+.|+++.+.+.+| +.+....|.+.
T Consensus 239 i~~~~~------~~~~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~-------------------------- 284 (362)
T 3sxp_A 239 NVKAMK------AQKSG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPY-------------------------- 284 (362)
T ss_dssp HHHHTT------CSSCE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-----------------------------
T ss_pred HHHHHh------cCCCC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCC--------------------------
Confidence 999987 33456 999999999999999999999999 65554444320
Q ss_pred HHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 314 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
........+|++|+++.|||+|+++++|+++++++|+++....
T Consensus 285 ----~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 285 ----AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp --------CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred ----cCcccceecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 0112346789999999999999999999999999999886543
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=353.95 Aligned_cols=301 Identities=19% Similarity=0.248 Sum_probs=243.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
||+||||||+||||++++++|+++| ++|++++|...... +.. ..+++++.+|++|.+++.++++ ++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----------~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 68 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHE----------DAI-TEGAKFYNGDLRDKAFLRDVFTQENI 68 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG----------GGS-CTTSEEEECCTTCHHHHHHHHHHSCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCch----------hhc-CCCcEEEECCCCCHHHHHHHHhhcCC
Confidence 5799999999999999999999999 59999998754110 111 1378999999999999999998 89
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
|+|||+|+... +..++...+++|+.++.+++++|++.+++|+||+||.++|+.. ...+.+|++ +..|.+.|+.
T Consensus 69 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~--~~~~~~E~~--~~~~~~~Y~~ 144 (330)
T 2c20_A 69 EAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEV--DVDLITEET--MTNPTNTYGE 144 (330)
T ss_dssp EEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSC--SSSSBCTTS--CCCCSSHHHH
T ss_pred CEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCC--CCCCCCcCC--CCCCCChHHH
Confidence 99999999543 2356788999999999999999999999999999999999643 345778887 4477899999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-----------CCcHHHHHHHhcC-CCceEEec------CCCccccc
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-----------TQLVPLLVNLAKP-GWTKFIIG------SGENMSDF 224 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~-----------~~~~~~~~~~~~~-g~~~~~~g------~g~~~~~~ 224 (467)
+|..+|++++.++.+.|++++++||+++|||+. ..+++.+...+.. +..+.++| ++++.++|
T Consensus 145 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 224 (330)
T 2c20_A 145 TKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224 (330)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEee
Confidence 999999999999877899999999999999963 2345666655543 34566776 67889999
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 304 (467)
+|++|+|++++.+++... ....+++||+++++++|+.|+++.+.+.+|.+.+...+|...
T Consensus 225 v~v~Dva~a~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----------------- 284 (330)
T 2c20_A 225 IHVEDLVAAHFLGLKDLQ---NGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRA----------------- 284 (330)
T ss_dssp EEHHHHHHHHHHHHHHHH---TTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCS-----------------
T ss_pred EeHHHHHHHHHHHHhccc---cCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCC-----------------
Confidence 999999999999998421 112368999999999999999999999999876544333110
Q ss_pred cccCCCCchHHHHHHhccceEeehhhHhhhCCCcccc-ChHHHHHHHHHHHHHhh
Q 012270 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~i~~~i~~~~~~~ 358 (467)
..+ ....+|++|++++|||+|++ +++|+++++++|++++.
T Consensus 285 ---~~~-----------~~~~~d~~k~~~~lG~~p~~~~l~~~l~~~~~~~~~~~ 325 (330)
T 2c20_A 285 ---GDP-----------ARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQP 325 (330)
T ss_dssp ---SCC-----------SEECBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ---Ccc-----------cccccCHHHHHHHhCCCCccCCHHHHHHHHHHHHHHhh
Confidence 001 13568999999999999998 99999999999998754
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=356.40 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=241.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
.+||+|||||||||||++|+++|+++|+ +... ...+++.+.+|++|++++.+++++
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~~~~----------------~~~~~~~~~~D~~d~~~~~~~~~~~ 60 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG-------LPGE----------------DWVFVSSKDADLTDTAQTRALFEKV 60 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC-------CTTC----------------EEEECCTTTCCTTSHHHHHHHHHHS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC-------cccc----------------cccccCceecccCCHHHHHHHHhhc
Confidence 3678999999999999999999999994 1110 011344457899999999999987
Q ss_pred -CCEEEEcccCCC----CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc--CCCCC
Q 012270 85 -ASTVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQ 157 (467)
Q Consensus 85 -~D~Vih~aa~~~----~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~--~~~~~ 157 (467)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++||. ....+.+|+++. +..|.
T Consensus 61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~--~~~~~~~E~~~~~~~~~p~ 138 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPD--KTTYPIDETMIHNGPPHNS 138 (319)
T ss_dssp CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCS--SCCSSBCGGGGGBSCCCSS
T ss_pred CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCC--CCCCCccccccccCCCCCC
Confidence 999999999643 456788899999999999999999999999999999999964 344578888743 33455
Q ss_pred C-hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHH----hcCCCceEEecCCCccccccc
Q 012270 158 D-LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNL----AKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 158 ~-~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~----~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+ +|+.+|..+|++++.++++.|++++++||+++|||+.. .+++.++.. +..|.++.+++++++.++|+|
T Consensus 139 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 218 (319)
T 4b8w_A 139 NFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIY 218 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEe
Confidence 5 69999999999999998878999999999999999864 356666665 788888889999999999999
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccc
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
++|+|++++.+++. .+...+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 219 v~Dva~a~~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------------------- 274 (319)
T 4b8w_A 219 SLDLAQLFIWVLRE----YNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK-------------------- 274 (319)
T ss_dssp HHHHHHHHHHHHHH----CCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS--------------------
T ss_pred HHHHHHHHHHHHhc----cccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC--------------------
Confidence 99999999999984 234457799999999999999999999999987654433211
Q ss_pred cCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 307 ~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
+. ......+|++|++++|||+|+++++|+++++++|++++.
T Consensus 275 ---~~--------~~~~~~~d~~k~~~~lg~~p~~~~~~~l~~~~~~~~~~~ 315 (319)
T 4b8w_A 275 ---SD--------GQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNY 315 (319)
T ss_dssp ---CC--------CCSCCCBCCHHHHHHCTTCCCCCHHHHHHHHHHHHHHSC
T ss_pred ---Cc--------CcccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 011346899999999999999999999999999998854
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=350.13 Aligned_cols=297 Identities=18% Similarity=0.126 Sum_probs=245.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
.+|+||||||+||||++++++|+++| ++|++++|.+.. . . .+++++.+|++|++++.+++++
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~------~-----~----l~~~~~~~Dl~d~~~~~~~~~~~~ 74 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSRNNEA------K-----L----PNVEMISLDIMDSQRVKKVISDIK 74 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCTTC------C-----C----TTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcc------c-----c----ceeeEEECCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 599999997651 0 0 1688999999999999999986
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
+|+|||+|+... ...++...+++|+.++.+++++|++. +++|+||+||.++||.......+.+|++ +..|.+.|
T Consensus 75 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~--~~~~~~~Y 152 (321)
T 2pk3_A 75 PDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEEN--QLRPMSPY 152 (321)
T ss_dssp CSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTS--CCBCCSHH
T ss_pred CCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCC--CCCCCCcc
Confidence 999999999543 34578889999999999999999886 6899999999999975421345778887 44678899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC--cHHHHHHHhcC---C--CceEEecCCCccccccchhHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKP---G--WTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~---g--~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
+.+|..+|++++.++.+.|++++++||+++|||+... .++.++..+.. | .++..++++++.++|+|++|+|++
T Consensus 153 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a 232 (321)
T 2pk3_A 153 GVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQA 232 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHH
Confidence 9999999999999877679999999999999998753 56666666555 6 566788888999999999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (467)
++.+++. + ..|++||+++++++|+.|+++.+.+.+|.+.+....|... . +
T Consensus 233 ~~~~~~~-----~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~--------------------~-~--- 282 (321)
T 2pk3_A 233 YWLLSQY-----G-KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQL--------------------R-P--- 282 (321)
T ss_dssp HHHHHHH-----C-CTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGC--------------------C-S---
T ss_pred HHHHHhC-----C-CCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccC--------------------C-C---
Confidence 9999983 3 4578999999999999999999999999875544443210 0 0
Q ss_pred HHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHH
Q 012270 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (467)
Q Consensus 314 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~ 356 (467)
. ......+|++|++++|||+|+++++|+++++++|+++
T Consensus 283 -~----~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 283 -S----EVPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320 (321)
T ss_dssp -S----CCSBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHT
T ss_pred -c----ccchhccCHHHHHHHcCCCcCCCHHHHHHHHHHHHhc
Confidence 0 0124668999999999999988999999999999975
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=354.27 Aligned_cols=310 Identities=21% Similarity=0.237 Sum_probs=249.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC---CCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL---SSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
+||+|||||||||||++++++|+++| ++|++++|.........+. +.... ...+++++.+|++|.+++.++++
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 101 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDE---VRSLVSEKQWSNFKFIQGDIRNLDDCNNACA 101 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHH---HHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCccchhhHHH---HhhhcccccCCceEEEECCCCCHHHHHHHhc
Confidence 57899999999999999999999999 5999999976410000000 00000 02578999999999999999999
Q ss_pred CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
++|+|||+|+... +..++...+++|+.++.+++++|++.+++|+||+||.++|+.. ...+.+|++ +..|.+.|
T Consensus 102 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~--~~~~~~E~~--~~~~~~~Y 177 (352)
T 1sb8_A 102 GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDH--PGLPKVEDT--IGKPLSPY 177 (352)
T ss_dssp TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTC--CCSSBCTTC--CCCCCSHH
T ss_pred CCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCC--CCCCCCCCC--CCCCCChh
Confidence 9999999999543 2356788999999999999999999999999999999999643 234678887 45778899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~ 234 (467)
+.+|..+|++++.++.+.|++++++||+.+|||+.. .+++.++..+..+.++.+++++++.++|+|++|+|+++
T Consensus 178 ~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 178 AVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHH
Confidence 999999999999987767999999999999999764 34677777777888878889999999999999999999
Q ss_pred HHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHc---CCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 012270 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL---GYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (467)
Q Consensus 235 ~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~---g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (467)
+.+++. .+...+++||+++++++|+.|+++.+.+.+ |.+.+.. |.+ . ..
T Consensus 258 ~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~--~~~----------------~----~~-- 309 (352)
T 1sb8_A 258 LLAATA----GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHRE--PVY----------------R----DF-- 309 (352)
T ss_dssp HHHHTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCC--CEE----------------E----CC--
T ss_pred HHHHhc----cccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCC--cee----------------c----CC--
Confidence 998862 124568899999999999999999999999 8765421 110 0 00
Q ss_pred chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
.+. ......+|++|++++|||+|+++++|+++++++|++++
T Consensus 310 -~~~----~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 310 -REG----DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp -CTT----CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred -Ccc----chhhccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 000 01235679999999999999889999999999999874
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=350.43 Aligned_cols=293 Identities=22% Similarity=0.302 Sum_probs=242.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+||||||+||||++++++|+++| ++|++++|..... . ... ..+++++.+|++|++++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~---------~-~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d 68 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGK---------R-ENV-PKGVPFFRVDLRDKEGVERAFREFRPT 68 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEECCCSSCC---------G-GGS-CTTCCEECCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCCcCc---------h-hhc-ccCeEEEECCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999 5999999854310 0 001 1467889999999999999998 799
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc-cccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA-DVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~-~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
+|||+|+... +..++...+++|+.|+.+++++|++.+++|+||+||. ++||.. ....+.+|+. +..|.+.|+.
T Consensus 69 ~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~-~~~~~~~E~~--~~~~~~~Y~~ 145 (311)
T 2p5y_A 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEV-PEGERAEETW--PPRPKSPYAA 145 (311)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCC-CTTCCBCTTS--CCCCCSHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCC-CCCCCcCCCC--CCCCCChHHH
Confidence 9999999543 2356778999999999999999999999999999999 899641 2234677877 4467889999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCceEEe-----cCCCccccccchhHHHH
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFII-----GSGENMSDFTYVENVAH 232 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-----~~~~~~~~~~~g~~~~~~-----g~g~~~~~~i~v~Dva~ 232 (467)
+|..+|++++.++.+.|++++++||+++|||+... +++.++..+..+.++.++ +++++.++|+|++|+|+
T Consensus 146 sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 225 (311)
T 2p5y_A 146 SKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225 (311)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHH
Confidence 99999999999877679999999999999997642 466777777778877777 88889999999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
+++.+++. + |++||+++++++|+.|+++.+.+.+|.+.+....|... ..
T Consensus 226 a~~~~~~~-----~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------------~~--- 274 (311)
T 2p5y_A 226 AHALALFS-----L---EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRP--------------------GD--- 274 (311)
T ss_dssp HHHHHHHH-----C---CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCT--------------------TC---
T ss_pred HHHHHHhC-----C---CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCc--------------------cc---
Confidence 99999872 2 78999999999999999999999999876544443210 00
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHH
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~ 356 (467)
.....+|++|+++ |||+|+++++|+++++++|+++
T Consensus 275 --------~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 275 --------LERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp --------CSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHHHT
T ss_pred --------hhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHHHh
Confidence 0235689999999 9999999999999999999975
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=361.05 Aligned_cols=303 Identities=22% Similarity=0.303 Sum_probs=243.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcC-CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
..+|+||||||+||||++++++|+++| + +|++++|...... +. +. ..++++++.+|++|++++.+++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~---~~---l~---~~~~v~~~~~Dl~d~~~l~~~~~~ 99 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLLSAEK---IN---VP---DHPAVRFSETSITDDALLASLQDE 99 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEECCCTTCCG---GG---SC---CCTTEEEECSCTTCHHHHHHCCSC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEECCCCCch---hh---cc---CCCceEEEECCCCCHHHHHHHhhC
Confidence 356899999999999999999999999 6 9999999764210 00 11 145799999999999999999999
Q ss_pred CCEEEEcccCCCC---CCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCCCCCCCC--CCccc-CC-CC
Q 012270 85 ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGD--ETLTC-CW-KF 156 (467)
Q Consensus 85 ~D~Vih~aa~~~~---~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~~~~~~~--E~~p~-~~-~~ 156 (467)
+|+|||+|+.... ..++...+++|+.++.+++++|++. +++||||+||.++||... ..+.+ |+.+. +. .|
T Consensus 100 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~--~~~~~~~E~~~~~~~~~~ 177 (377)
T 2q1s_A 100 YDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKT--FDDAKATEETDIVSLHNN 177 (377)
T ss_dssp CSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC----------------CCCCCCCSSCC
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCC--CCCcCcccccccccccCC
Confidence 9999999995432 2467889999999999999999999 999999999999996532 23556 76521 23 67
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC---------------CCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD---------------TQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~---------------~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
.+.|+.+|..+|++++.++.+.|++++++||+.+|||+. ..+++.++..+..+.++.+++++++.
T Consensus 178 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 257 (377)
T 2q1s_A 178 DSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVAT 257 (377)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCE
T ss_pred CCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeE
Confidence 789999999999999998776799999999999999987 34677888888888887788888999
Q ss_pred ccccchhHHHHH-HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHH
Q 012270 222 SDFTYVENVAHA-HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300 (467)
Q Consensus 222 ~~~i~v~Dva~a-~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~ 300 (467)
++|+|++|+|++ ++.+++ .+. .| +||+++++++|+.|+++.+.+.+|.+.+...+|..
T Consensus 258 ~~~i~v~Dva~a~i~~~~~-----~~~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-------------- 316 (377)
T 2q1s_A 258 RDFIFVEDVANGLIACAAD-----GTP-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKR-------------- 316 (377)
T ss_dssp ECCEEHHHHHHHHHHHHHH-----CCT-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCC--------------
T ss_pred EeeEEHHHHHHHHHHHHHh-----cCC-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCC--------------
Confidence 999999999999 999988 333 56 99999999999999999999999987654444310
Q ss_pred HhcccccCCCCchHHHHHHhcc-ceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 301 KLGLRTYNHSLSACYIVQLASR-TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 301 ~~~~~~~~~p~~~~~~~~~~~~-~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
+.. .. ...+|++|++++|||+|+++++|+++++++|++++.
T Consensus 317 -------------~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 317 -------------PWD----NSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANL 358 (377)
T ss_dssp -------------GGG----CC-CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTH
T ss_pred -------------ccc----cccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 000 11 456899999999999999999999999999998754
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=348.25 Aligned_cols=306 Identities=21% Similarity=0.199 Sum_probs=246.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+|+||||||+||||++++++|+++|+ ++|++++|...... .+. +.......+++++.+|++|++++.+++.++|
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~--~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 77 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSN--PAN---LKDLEDDPRYTFVKGDVADYELVKELVRKVD 77 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHTCS
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCc--hhH---HhhhccCCceEEEEcCCCCHHHHHHHhhCCC
Confidence 57899999999999999999999972 49999998653110 000 1111124579999999999999999999999
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCC-CeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v-~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
+|||+|+... +..++...+++|+.++.+++++|++.++ +|+||+||.++||... ..+.+|+. +..|.+.|+.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~E~~--~~~~~~~Y~~ 153 (336)
T 2hun_A 78 GVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDIL--KGSFTEND--RLMPSSPYSA 153 (336)
T ss_dssp EEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCS--SSCBCTTB--CCCCCSHHHH
T ss_pred EEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCC--CCCcCCCC--CCCCCCccHH
Confidence 9999999543 2346778999999999999999999875 7999999999996532 34678887 4467889999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHH
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~ 240 (467)
+|..+|++++.++.+.|++++++||+.+|||+.. .+++.++..+..+.++.+++++++.++|+|++|+|++++.+++.
T Consensus 154 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~ 233 (336)
T 2hun_A 154 TKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLK 233 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhC
Confidence 9999999999988778999999999999999864 46677888888888888889999999999999999999999872
Q ss_pred hccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHh
Q 012270 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLA 320 (467)
Q Consensus 241 ~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 320 (467)
...|++||+++++++|+.|+++.+.+.+|.+.+.+.... ..+. .
T Consensus 234 ------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----------------------~~~~--------~ 277 (336)
T 2hun_A 234 ------GESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVE----------------------DRPG--------H 277 (336)
T ss_dssp ------CCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEEC----------------------CCTT--------C
T ss_pred ------CCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccC----------------------CCCC--------c
Confidence 346789999999999999999999999998754221100 0010 0
Q ss_pred ccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 321 SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 321 ~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.....+|++|++++|||+|+++++|+++++++|+++..
T Consensus 278 ~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 315 (336)
T 2hun_A 278 DLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNE 315 (336)
T ss_dssp CCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHTH
T ss_pred hhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 12345799999999999999999999999999998753
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=350.97 Aligned_cols=312 Identities=17% Similarity=0.212 Sum_probs=244.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
|+|+||||||+||||++++++|+++| ++|++++|.................. ....+++++.+|++|++++.++++
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh
Confidence 35799999999999999999999999 59999998654200000000000000 012468999999999999999998
Q ss_pred -CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCC-CC
Q 012270 84 -GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QD 158 (467)
Q Consensus 84 -~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~~ 158 (467)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++||.. ...+.+|+.| ..| .+
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~--~~~~~~E~~~--~~p~~~ 155 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNP--QYLPLDEAHP--TGGCTN 155 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSC--SSSSBCTTSC--CCCCSS
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCC--CCCCcCCCCC--CCCCCC
Confidence 7999999999543 2356778999999999999999999999999999999999643 3457788874 355 78
Q ss_pred hHHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCC------------CCcHHHHHHHhc-CCCceEEec------CC
Q 012270 159 LMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGD------------TQLVPLLVNLAK-PGWTKFIIG------SG 218 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~-~g~~~~ilRp~~i~G~~~------------~~~~~~~~~~~~-~g~~~~~~g------~g 218 (467)
.|+.+|..+|++++.++.+ .+++++++||+++|||+. ..+++.+...+. .+.++.++| ++
T Consensus 156 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 235 (348)
T 1ek6_A 156 PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDG 235 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred chHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCC
Confidence 9999999999999998764 239999999999999953 235666666666 677777777 67
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCC-cEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHH
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAG-MAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g-~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~ 297 (467)
++.++|+|++|+|++++.+++.. ....| ++||+++++++|+.|+++.+.+.+|.+.+...+|...
T Consensus 236 ~~~~~~i~v~Dva~a~~~~~~~~----~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------- 301 (348)
T 1ek6_A 236 TGVRDYIHVVDLAKGHIAALRKL----KEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARRE---------- 301 (348)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHH----TTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCT----------
T ss_pred ceEEeeEEHHHHHHHHHHHHhcc----cccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCC----------
Confidence 88899999999999999999841 11344 8999999999999999999999999876544333110
Q ss_pred HHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.. .....+|++|++++|||+|+++++|+++++++|++++.
T Consensus 302 ----------~~-----------~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~ 341 (348)
T 1ek6_A 302 ----------GD-----------VAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNP 341 (348)
T ss_dssp ----------TC-----------CSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred ----------cc-----------chhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 00 12356899999999999999999999999999998753
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=351.51 Aligned_cols=304 Identities=18% Similarity=0.214 Sum_probs=248.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
||+||||||+||||++++++|+++ | ++|++++|....... +. +. ....++++++.+|++|++++.++++++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~--~~---~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNK--AN---LE-AILGDRVELVVGDIADAELVDKLAAKA 76 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG--GG---TG-GGCSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCCh--hH---Hh-hhccCCeEEEECCCCCHHHHHHHhhcC
Confidence 689999999999999999999999 7 599999996531100 00 11 112357899999999999999999999
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCC----------CCCCCCCCccc
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH----------DIHNGDETLTC 152 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~----------~~~~~~E~~p~ 152 (467)
|+|||+|+... +..+++..+++|+.++.+++++|++.++ |+||+||.++||.... ...+.+|++
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~-- 153 (348)
T 1oc2_A 77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET-- 153 (348)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS--
T ss_pred CEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCC--
Confidence 99999999653 2346778999999999999999999988 9999999999975421 114677877
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
+..|.+.|+.+|..+|++++.++.+.|++++++||+.+|||+.. .+++.++..+..+.++.+++++++.++|+|++|+
T Consensus 154 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 233 (348)
T 1oc2_A 154 NYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDH 233 (348)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHH
Confidence 44678899999999999999988767999999999999999864 4667777777788877888999999999999999
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCcc-CChHHHHHHHHHHHHHHHHhcccccCC
Q 012270 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-LPTGVVWYIILLVKWIHEKLGLRTYNH 309 (467)
Q Consensus 231 a~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~-ip~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (467)
|++++.+++. ...|++||+++++++|+.|+++.+.+.+|.+.+.+. .+ ..
T Consensus 234 a~~~~~~~~~------~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-----------------------~~ 284 (348)
T 1oc2_A 234 STGVWAILTK------GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT-----------------------DR 284 (348)
T ss_dssp HHHHHHHHHH------CCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC-----------------------CC
T ss_pred HHHHHHHhhC------CCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCC-----------------------CC
Confidence 9999999872 246789999999999999999999999998754221 11 11
Q ss_pred CCchHHHHHHhccceEeehhhHhhhCCCccccC-hHHHHHHHHHHHHHhh
Q 012270 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHLA 358 (467)
Q Consensus 310 p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~-l~e~i~~~i~~~~~~~ 358 (467)
+. ......+|++|++++|||+|+++ ++|+++++++|++++.
T Consensus 285 ~~--------~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 285 AG--------HDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp TT--------CCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred CC--------cccccccCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhh
Confidence 10 01234589999999999999988 9999999999998754
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=349.89 Aligned_cols=303 Identities=20% Similarity=0.241 Sum_probs=247.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc---C---CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL---G---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~---g---~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
|+|||||||||||++++++|+++ | + +|++++|...... .+ .+.......+++++.+|++|++++.+++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~-~V~~~~r~~~~~~--~~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD-EVIVLDSLTYAGN--RA---NLAPVDADPRLRFVHGDIRDAGLLAREL 74 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS-EEEEEECCCTTCC--GG---GGGGGTTCTTEEEEECCTTCHHHHHHHT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCce-EEEEEECCCccCc--hh---hhhhcccCCCeEEEEcCCCCHHHHHHHh
Confidence 58999999999999999999996 6 5 9999998653110 00 0111112357899999999999999999
Q ss_pred hCCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 83 EGASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 83 ~~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
.++|+|||+|+... +..+++..+++|+.++.+++++|++.+++|+||+||.++||... ..+.+|+. +..|.+.
T Consensus 75 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~--~~~~~~~ 150 (337)
T 1r6d_A 75 RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSID--SGSWTESS--PLEPNSP 150 (337)
T ss_dssp TTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCS--SSCBCTTS--CCCCCSH
T ss_pred cCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCC--CCCCCCCC--CCCCCCc
Confidence 99999999999543 23467789999999999999999999999999999999996542 34678877 4567889
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
|+.+|..+|++++.++.+.|++++++||+.+|||+.. .+++.++..+..+.++.+++++++.++|+|++|+|++++.+
T Consensus 151 Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 230 (337)
T 1r6d_A 151 YAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALV 230 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHH
Confidence 9999999999999988767999999999999999864 46777888888888888889999999999999999999999
Q ss_pred HHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCcc-CChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-LPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~-ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
++. ...|++||+++++++|+.|+++.+.+.+|.+.+.+. .+ ..+.
T Consensus 231 ~~~------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-----------------------~~~~----- 276 (337)
T 1r6d_A 231 LAG------GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA-----------------------DRKG----- 276 (337)
T ss_dssp HHH------CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEEC-----------------------CCTT-----
T ss_pred HhC------CCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecC-----------------------CCCC-----
Confidence 873 246789999999999999999999999998643211 10 1110
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
....+.+|++|++++|||+|+++++|+++++++|+++..
T Consensus 277 ---~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 315 (337)
T 1r6d_A 277 ---HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENR 315 (337)
T ss_dssp ---CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCH
T ss_pred ---CcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhch
Confidence 011245799999999999999999999999999998753
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=351.24 Aligned_cols=316 Identities=17% Similarity=0.169 Sum_probs=246.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC-HHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~D 86 (467)
|+|||||||||||++++++|+++ | ++|++++|++.. .......++++++.+|++| .+.+.++++++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~----------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d 69 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDA----------ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCD 69 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGG----------GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCS
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCCcch----------HHHhhcCCCeEEEeccccCcHHHHHhhccCCC
Confidence 68999999999999999999998 8 599999997652 1111224579999999998 466888899999
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc----C-CCCCC
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----C-WKFQD 158 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~----~-~~~~~ 158 (467)
+|||+|+... ...++...+++|+.++.+++++|++.+ +|+||+||.++||... ..+.+|+++. + ..|.+
T Consensus 70 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~--~~~~~e~~~~~~~~~~~~~~~ 146 (345)
T 2bll_A 70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCS--DKYFDEDHSNLIVGPVNKPRW 146 (345)
T ss_dssp EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCC--CSSBCTTTCCCBCCCTTCGGG
T ss_pred EEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCC--CCCcCCcccccccCcccCccc
Confidence 9999999543 234677899999999999999999999 8999999999996533 3356776642 1 13556
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
.|+.+|..+|++++.++++.|++++++||+.+|||+.. ..++.++..+..|.++.+++++++.++|+|++
T Consensus 147 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 226 (345)
T 2bll_A 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHH
Confidence 89999999999999987767999999999999999863 24667777778888888888889999999999
Q ss_pred HHHHHHHHHHHHhcccccc--CCCcEEEEcCCC-CcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhccc
Q 012270 229 NVAHAHVCAAEALDSRMVS--VAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~--~~g~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~ 305 (467)
|+|++++.+++. +. ..|++||+++++ ++|+.|+++.+.+.+|.+.+.+.+|.+......... ...+
T Consensus 227 Dva~a~~~~~~~-----~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~-- 295 (345)
T 2bll_A 227 DGIEALYRIIEN-----AGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESS----SYYG-- 295 (345)
T ss_dssp HHHHHHHHHHHC-----GGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------------
T ss_pred HHHHHHHHHHhh-----ccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccch----hhcc--
Confidence 999999999982 32 467899999986 899999999999999987655555532100000000 0000
Q ss_pred ccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 306 ~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.... ......+|++|++++|||+|+++++|+++++++|+++...
T Consensus 296 ---------~~~~-~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 339 (345)
T 2bll_A 296 ---------KGYQ-DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (345)
T ss_dssp ---------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred ---------cccc-chhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCC
Confidence 0000 0124567999999999999999999999999999987643
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-44 Score=348.46 Aligned_cols=287 Identities=17% Similarity=0.201 Sum_probs=236.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
++|+||||||+||||++|+++|+++|+ +|++++|.. .+|+.|.+++.++++ +
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------------~~D~~d~~~~~~~~~~~~ 55 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTRD-------------------------ELNLLDSRAVHDFFASER 55 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCTT-------------------------TCCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEecCc-------------------------cCCccCHHHHHHHHHhcC
Confidence 357999999999999999999999994 899887642 269999999999998 8
Q ss_pred CCEEEEcccCCC----CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc--CCCCC-
Q 012270 85 ASTVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQ- 157 (467)
Q Consensus 85 ~D~Vih~aa~~~----~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~--~~~~~- 157 (467)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++||... ..+.+|+++. +..|.
T Consensus 56 ~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~~~~~~~p~~ 133 (321)
T 1e6u_A 56 IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLA--KQPMAESELLQGTLEPTN 133 (321)
T ss_dssp CSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTC--CSSBCGGGTTSSCCCGGG
T ss_pred CCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCC--CCCcCccccccCCCCCCC
Confidence 999999999653 23567889999999999999999999999999999999996432 3467787642 23443
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcC----C-CceEEecCCCccccccc
Q 012270 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKP----G-WTKFIIGSGENMSDFTY 226 (467)
Q Consensus 158 ~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~----g-~~~~~~g~g~~~~~~i~ 226 (467)
+.|+.+|..+|++++.++++.|++++++||+.+|||+.. .+++.++..+.. | .++.+++++++.++|+|
T Consensus 134 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~ 213 (321)
T 1e6u_A 134 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLH 213 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEE
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEE
Confidence 599999999999999987767999999999999999865 466777766653 3 56677899999999999
Q ss_pred hhHHHHHHHHHHHHhccccccC--------CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAEALDSRMVSV--------AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~--------~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~ 298 (467)
++|+|++++.++++ +.. .+++||+++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 214 v~Dva~~~~~~~~~-----~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------------- 275 (321)
T 1e6u_A 214 VDDMAAASIHVMEL-----AHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------------- 275 (321)
T ss_dssp HHHHHHHHHHHHHS-----CHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-------------
T ss_pred HHHHHHHHHHHHhC-----cccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCC-------------
Confidence 99999999999983 322 3679999999999999999999999998754333321
Q ss_pred HHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.+. ......+|++|+++ |||+|+++++|+++++++|++++.
T Consensus 276 ----------~~~--------~~~~~~~d~~k~~~-lG~~p~~~~~~~l~~~~~~~~~~~ 316 (321)
T 1e6u_A 276 ----------KPD--------GTPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLENQ 316 (321)
T ss_dssp ----------SCC--------CCSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTC
T ss_pred ----------CCC--------CcccccCCHHHHHh-cCCccCCcHHHHHHHHHHHHHHHH
Confidence 010 01235689999999 999998899999999999998754
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=349.01 Aligned_cols=296 Identities=19% Similarity=0.215 Sum_probs=241.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++|+|||||||||||++|+++|+++| ++|++++|.......... .+.......+++++.+|+. ++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~----------~~ 70 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPE---GTGKFLEKPVLELEERDLS----------DV 70 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCT---TSSEEECSCGGGCCHHHHT----------TE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchh---hhhhhccCCCeeEEeCccc----------cC
Confidence 357899999999999999999999999 599999997752111111 1222222345666667765 78
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
|+|||+|+... ...++...++ |+.++.+++++|++.+++||||+||.++|+.. ...+.+|+. +..|.+.|+.
T Consensus 71 d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~--~~~~~~E~~--~~~p~~~Y~~ 145 (321)
T 3vps_A 71 RLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQA--DTLPTPEDS--PLSPRSPYAA 145 (321)
T ss_dssp EEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSC--SSSSBCTTS--CCCCCSHHHH
T ss_pred CEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCC--CCCCCCCCC--CCCCCChhHH
Confidence 99999999543 3455666777 99999999999999999999999999999643 445788887 5578899999
Q ss_pred HHHHHHHHHHhhcCCCCc-eEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 163 LKAQAEALVLFANNIDGL-LTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~-~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
+|..+|++++.++.++|+ +++++||+.+|||+.. .+++.++..+..++++.+++++++.++|+|++|+|++++.+++
T Consensus 146 sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 225 (321)
T 3vps_A 146 SKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALAN 225 (321)
T ss_dssp HHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHh
Confidence 999999999999988899 9999999999999865 4678888888888888999999999999999999999999987
Q ss_pred HhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 012270 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (467)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (467)
.+ ..| +||+++++++|+.|+++.+. .+|.+.+...+|.+. .
T Consensus 226 -----~~-~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~--------------------~----------- 266 (321)
T 3vps_A 226 -----RP-LPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRP--------------------N----------- 266 (321)
T ss_dssp -----SC-CCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCT--------------------T-----------
T ss_pred -----cC-CCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCC--------------------C-----------
Confidence 23 347 99999999999999999999 999886654444210 0
Q ss_pred hccceEeehhhHhhhCCCcc-ccChHHHHHHHHHHHHHhhh
Q 012270 320 ASRTRTFDCIAAQKHIGYSP-VVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 320 ~~~~~~~d~~k~~~~lG~~p-~~~l~e~i~~~i~~~~~~~~ 359 (467)
......+|++|++++|||+| +++++|+++++++|++++..
T Consensus 267 ~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 267 EITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp CCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCT
T ss_pred CcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCC
Confidence 01246789999999999999 88999999999999988643
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=346.16 Aligned_cols=309 Identities=17% Similarity=0.125 Sum_probs=242.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+.++|+||||||+||||++++++|+++| ++|++++|.+..... .. +......++++++.+|++|++++.+++++
T Consensus 11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~--~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 84 (335)
T 1rpn_A 11 GSMTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTR--WR---LRELGIEGDIQYEDGDMADACSVQRAVIK 84 (335)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCC--HH---HHHTTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCccccc--cc---hhhccccCceEEEECCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999 599999997652100 00 00001234689999999999999999986
Q ss_pred --CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCC-CeEEEEcCccccccCCCCCCCCCCCcccCCCCCC
Q 012270 85 --ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (467)
Q Consensus 85 --~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v-~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~ 158 (467)
+|+|||+|+... +..++...+++|+.++.+++++|++.++ +|+||+||.++||... ..+.+|++ +..|.+
T Consensus 85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~--~~~~~E~~--~~~p~~ 160 (335)
T 1rpn_A 85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ--AERQDENT--PFYPRS 160 (335)
T ss_dssp HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS--SSSBCTTS--CCCCCS
T ss_pred cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCC--CCCCCccc--CCCCCC
Confidence 699999999543 2467888999999999999999999986 8999999999996433 34678887 457788
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCC-ceEEecCCCccccccchhHHHH
Q 012270 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-~----~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
.|+.+|..+|++++.++.+++++++++||+.+|||+... + +..++..+..|. +...+|++++.++|+|++|+|+
T Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~ 240 (335)
T 1rpn_A 161 PYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVE 240 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHH
Confidence 999999999999999887679999999999999997542 2 445555666675 3456788899999999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC-CccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (467)
+++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+ .+.++.. .
T Consensus 241 a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------------------~ 289 (335)
T 1rpn_A 241 AMWLMLQ-----QDK--ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPA------------------------F 289 (335)
T ss_dssp HHHHHHH-----SSS--CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGG------------------------G
T ss_pred HHHHHHh-----cCC--CCEEEEeCCCCccHHHHHHHHHHHhCCCcccccccccc------------------------c
Confidence 9999998 232 469999999999999999999999997632 1111110 0
Q ss_pred chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
..+. ......+|++|++++|||+|+++++|+++++++|++++.
T Consensus 290 ~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 332 (335)
T 1rpn_A 290 FRPA----EVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRV 332 (335)
T ss_dssp CCSS----CCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCCC----cchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh
Confidence 0000 012356799999999999999999999999999998864
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=351.21 Aligned_cols=313 Identities=19% Similarity=0.194 Sum_probs=242.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHH-hcCCcEEEEEcCCCCccCCC--CcCCCCCC----CcCC---CCC---eEEEEecCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDP--SESNSLLP----DSLS---SGR---AEYHQVDVRD 74 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll-~~g~~~V~~~~r~~~~~~~~--~~~~~~~~----~~~~---~~~---v~~~~~Dl~d 74 (467)
+|+||||||+||||++++++|+ ++| ++|++++|........ .+....+. .... ..+ ++++.+|++|
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 4699999999999999999999 999 5999999875421000 00000000 0000 124 8899999999
Q ss_pred HHHHHHHHh--C-CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCC-----CC
Q 012270 75 ISQIKKVLE--G-ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH-----DI 143 (467)
Q Consensus 75 ~~~l~~~~~--~-~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~-----~~ 143 (467)
++++.++++ + +|+|||+|+... +..++...+++|+.++.+++++|++.+++|+||+||.++|+.... ..
T Consensus 81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence 999999998 7 999999999553 235678899999999999999999999999999999999964331 13
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-----------CCcHHHHH----HHhcC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-----------TQLVPLLV----NLAKP 208 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~-----------~~~~~~~~----~~~~~ 208 (467)
.+.+|++ +..|.+.|+.+|..+|++++.++.+.|++++++||+++|||+. ..+++.++ ..+..
T Consensus 161 ~~~~E~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (397)
T 1gy8_A 161 EPIDINA--KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238 (397)
T ss_dssp CCBCTTS--CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSC
T ss_pred cCcCccC--CCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHh
Confidence 5778887 4477889999999999999998876799999999999999963 23555555 23334
Q ss_pred CC------------ceEEec------CCCccccccchhHHHHHHHHHHHHhccccccCC-----C---cEEEEcCCCCcC
Q 012270 209 GW------------TKFIIG------SGENMSDFTYVENVAHAHVCAAEALDSRMVSVA-----G---MAFFITNLEPIK 262 (467)
Q Consensus 209 g~------------~~~~~g------~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~-----g---~~yni~~~~~~s 262 (467)
+. ++.++| ++++.++||||+|+|++++.+++. +... + ++||+++++++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~-----~~~~~~~~~~~~~~~~ni~~~~~~s 313 (397)
T 1gy8_A 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDY-----VEKLGPNDKSKYFSVFNLGTSRGYS 313 (397)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHH-----HHTCCTTTGGGSEEEEEESCSCCEE
T ss_pred cCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhc-----ccccccccccCCCcEEEeCCCCccc
Confidence 43 466776 678899999999999999999874 2222 3 799999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCcccc-
Q 012270 263 FWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV- 341 (467)
Q Consensus 263 ~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~- 341 (467)
+.|+++.+.+.+|.+.+....|... .. .....+|++|++++|||+|++
T Consensus 314 ~~e~~~~i~~~~g~~~~~~~~~~~~--------------------~~-----------~~~~~~d~~k~~~~lG~~p~~~ 362 (397)
T 1gy8_A 314 VREVIEVARKTTGHPIPVRECGRRE--------------------GD-----------PAYLVAASDKAREVLGWKPKYD 362 (397)
T ss_dssp HHHHHHHHHHHHCCCCCEEEECCCT--------------------TC-----------CSEECBCCHHHHHHTCCCCSCC
T ss_pred HHHHHHHHHHHhCCCCCeeeCCCCC--------------------Cc-----------ccccccCHHHHHHHhCCCCCcC
Confidence 9999999999999876543333110 00 123568999999999999998
Q ss_pred ChHHHHHHHHHHHHHhhh
Q 012270 342 SLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 342 ~l~e~i~~~i~~~~~~~~ 359 (467)
+++|+++++++|++++..
T Consensus 363 ~l~e~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 363 TLEAIMETSWKFQRTHPN 380 (397)
T ss_dssp SHHHHHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 999999999999987643
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=347.26 Aligned_cols=309 Identities=21% Similarity=0.240 Sum_probs=243.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--C
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~ 85 (467)
||+|||||||||||++++++|+++| ++|++++|...... ... ........+++++.+|++|++++.+++++ +
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~--~~~---~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGA--TDN---LHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTH--HHH---HHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCCccCc--hhh---hhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 5799999999999999999999999 59999998532100 000 00001124688999999999999999998 9
Q ss_pred CEEEEcccCCCC---CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCccccccCCCC--------------CCCCC
Q 012270 86 STVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHD--------------IHNGD 147 (467)
Q Consensus 86 D~Vih~aa~~~~---~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~~vyg~~~~~--------------~~~~~ 147 (467)
|+|||+|+.... ..++...+++|+.++.+++++|++.+++ |+||+||.++||..... ..+.+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~ 154 (347)
T 1orr_A 75 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD 154 (347)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBC
T ss_pred CEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCcc
Confidence 999999995432 3467889999999999999999999986 99999999999743221 11245
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----CcHHHHHHHhcCCC-----ceEEecC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGW-----TKFIIGS 217 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-----~~~~~~~~~~~~g~-----~~~~~g~ 217 (467)
|+. +..|.+.|+.+|..+|++++.++.+.|++++++||+.+|||+.. ..++.++..+..+. ++.++|+
T Consensus 155 e~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (347)
T 1orr_A 155 EST--QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGN 232 (347)
T ss_dssp TTS--CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred ccC--CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecC
Confidence 655 34577899999999999999988767999999999999999753 24566666655555 6778899
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC--CcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHH
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLV 295 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~--~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~ 295 (467)
+++.++|+|++|+|++++.+++. .+...|++||+++++ ++|+.|+++.+.+.+|.+.+...+|..
T Consensus 233 g~~~~~~i~v~Dva~a~~~~~~~----~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------- 299 (347)
T 1orr_A 233 GKQVRDVLHAEDMISLYFTALAN----VSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR--------- 299 (347)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHT----HHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC---------
T ss_pred CcceEeeEEHHHHHHHHHHHHhc----cccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCC---------
Confidence 99999999999999999999872 134568899999986 499999999999999987655444310
Q ss_pred HHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 296 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
+. ......+|++|++++|||+|+++++|+++++++|+++...
T Consensus 300 --------------~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 300 --------------ES--------DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp --------------SS--------CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred --------------CC--------CcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 00 0123567999999999999988999999999999988653
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=349.04 Aligned_cols=312 Identities=22% Similarity=0.253 Sum_probs=247.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
|+||||||+||||++++++|+++ | ++|++++|...... .+. +.......+++++.+|++|.+++.++++ ++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~--~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGN--LES---LSDISESNRYNFEHADICDSAEITRIFEQYQP 74 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCC--GGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCCCCc--hhh---hhhhhcCCCeEEEECCCCCHHHHHHHHhhcCC
Confidence 58999999999999999999998 6 59999998652100 000 1111124579999999999999999998 89
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhC--CCC-------eEEEEcCccccccCCCCC--------CC
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC--KVR-------RLVYNSTADVVFDGSHDI--------HN 145 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~-------r~v~~SS~~vyg~~~~~~--------~~ 145 (467)
|+|||+|+... +..+++..+++|+.++.+++++|++. +++ ||||+||.++||...... .+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~ 154 (361)
T 1kew_A 75 DAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPL 154 (361)
T ss_dssp SEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCC
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCC
Confidence 99999999543 23567889999999999999999998 888 999999999997532111 15
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
.+|+. +..|.+.|+.+|..+|++++.++.+.|++++++||+.+|||+.. .+++.++..+..+.++.+++++++.++
T Consensus 155 ~~E~~--~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (361)
T 1kew_A 155 FTETT--AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRD 232 (361)
T ss_dssp BCTTS--CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEE
T ss_pred CCCCC--CCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEe
Confidence 67776 44678899999999999999988767999999999999999864 456777777778887788899999999
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhc
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 303 (467)
|+|++|+|++++.+++. ...|++||+++++++|+.|+++.+.+.+|.+.+... |.. ....
T Consensus 233 ~i~v~Dva~a~~~~~~~------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~-p~~-------------~~~~ 292 (361)
T 1kew_A 233 WLYVEDHARALHMVVTE------GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT-SYR-------------EQIT 292 (361)
T ss_dssp EEEHHHHHHHHHHHHHH------CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSS-CGG-------------GGEE
T ss_pred eEEHHHHHHHHHHHHhC------CCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCcccc-ccc-------------ccee
Confidence 99999999999999872 346789999999999999999999999987644321 210 0000
Q ss_pred ccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 304 ~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
. ....+. ......+|++|++++|||+|+++++|+++++++|+++.
T Consensus 293 ~-~~~~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 293 Y-VADRPG--------HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp E-ECCCTT--------CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred e-cCCCCc--------ccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 0 000010 01235689999999999999999999999999999875
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=342.83 Aligned_cols=300 Identities=21% Similarity=0.228 Sum_probs=241.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++|+|||||||||||++|+++|+++| ++|++++|...... +. ........+++++.+|+.|.. +.++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~---~~~~~~~~~~~~~~~D~~~~~-----~~~~ 92 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRK---RN---VEHWIGHENFELINHDVVEPL-----YIEV 92 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG---GG---TGGGTTCTTEEEEECCTTSCC-----CCCC
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCccch---hh---hhhhccCCceEEEeCccCChh-----hcCC
Confidence 467899999999999999999999999 59999999754111 00 111122457899999998853 5689
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc---cCCCCCCh
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDL 159 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p---~~~~~~~~ 159 (467)
|+|||+|+... ...++...+++|+.++.+++++|++.++ |+||+||.++||... ..+.+|+.+ .+..|.+.
T Consensus 93 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~--~~~~~E~~~~~~~~~~~~~~ 169 (343)
T 2b69_A 93 DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPE--VHPQSEDYWGHVNPIGPRAC 169 (343)
T ss_dssp SEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCS--SSSBCTTCCCBCCSSSTTHH
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCC--CCCCcccccccCCCCCCCCc
Confidence 99999999543 2456788899999999999999999987 999999999996432 345677642 14456778
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~ 235 (467)
|+.+|..+|++++.++++.|++++++||+.+|||+.. ..++.++..+..++++.+++++++.++|+|++|+|++++
T Consensus 170 Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 249 (343)
T 2b69_A 170 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV 249 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHH
Confidence 9999999999999987767999999999999999753 456777777778888888999999999999999999999
Q ss_pred HHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 236 ~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
.+++ .+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|... ..+
T Consensus 250 ~~~~-----~~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~--------------------~~~----- 297 (343)
T 2b69_A 250 ALMN-----SN--VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ--------------------DDP----- 297 (343)
T ss_dssp HHHT-----SS--CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT--------------------TCC-----
T ss_pred HHHh-----cC--CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCC--------------------CCC-----
Confidence 9886 22 367999999999999999999999999876655554320 001
Q ss_pred HHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
....+|++|++++|||+|+++++|+++++++|+++..
T Consensus 298 ------~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 334 (343)
T 2b69_A 298 ------QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 334 (343)
T ss_dssp ------CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred ------ceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1345799999999999998899999999999998764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=343.76 Aligned_cols=312 Identities=17% Similarity=0.166 Sum_probs=245.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
.+|+||||||+||||++|+++|+++| ++|++++|++........ ......+++++.+|++|++++.+++++
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~------~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 80 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFE------TARVADGMQSEIGDIRDQNKLLESIREFQ 80 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHH------HTTTTTTSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCCcccchhhH------hhccCCceEEEEccccCHHHHHHHHHhcC
Confidence 46899999999999999999999999 599999997652111000 000135789999999999999999986
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
+|+|||+|+... +..++...+++|+.++.+++++|++.+ ++|+||+||.++||.... ..+.+|++ +..|.+.|
T Consensus 81 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~~E~~--~~~~~~~Y 157 (357)
T 1rkx_A 81 PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-IWGYRENE--AMGGYDPY 157 (357)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-SSCBCTTS--CBCCSSHH
T ss_pred CCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc-CCCCCCCC--CCCCCCcc
Confidence 899999999532 235677899999999999999999986 899999999999975432 23567776 44678899
Q ss_pred HHHHHHHHHHHHhhcCCC---------CceEEEEeCCCcccCCCC---CcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 161 CDLKAQAEALVLFANNID---------GLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~---------g~~~~ilRp~~i~G~~~~---~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
+.+|..+|++++.++.+. |++++++||+.+|||++. .+++.++..+..|.++.+ +++++.++|+|++
T Consensus 158 ~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~v~v~ 236 (357)
T 1rkx_A 158 SNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVII-RNPHAIRPWQHVL 236 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEEC-SCTTCEECCEETH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEE-CCCCCeeccEeHH
Confidence 999999999999986543 899999999999999863 577888888888887554 4567889999999
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCC--CCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccc
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~--~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
|+|++++.++++.... +...+++||++++ +++|+.|+++.+.+.+|.+.+. ..+..
T Consensus 237 Dva~a~~~~~~~~~~~-~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~-------------------- 294 (357)
T 1rkx_A 237 EPLSGYLLLAQKLYTD-GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASW-QLDGN-------------------- 294 (357)
T ss_dssp HHHHHHHHHHHHHHHT-CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCE-EC-----------------------
T ss_pred HHHHHHHHHHHhhhhc-CCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCcc-ccCCC--------------------
Confidence 9999999998742100 1245679999984 6899999999999999987543 22210
Q ss_pred cCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 307 ~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
+ .+ .......+|++|++++|||+|+++++|+++++++|++++...
T Consensus 295 ---~--~~----~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 295 ---A--HP----HEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp -------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ---C--CC----cCcccccCCHHHHHHHhCCCcCCcHHHHHHHHHHHHHHHhcC
Confidence 0 00 011345689999999999999999999999999999886543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-43 Score=335.96 Aligned_cols=279 Identities=16% Similarity=0.151 Sum_probs=226.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-A 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-~ 85 (467)
+||+||||| +||||++|+++|+++| ++|++++|+... ..++++++.+|++|++++.+++++ +
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r~~~~---------------~~~~~~~~~~Dl~d~~~~~~~~~~~~ 64 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQG-HEVTGLRRSAQP---------------MPAGVQTLIADVTRPDTLASIVHLRP 64 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECTTSC---------------CCTTCCEEECCTTCGGGCTTGGGGCC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCccc---------------cccCCceEEccCCChHHHHHhhcCCC
Confidence 468999999 5999999999999999 599999997651 135789999999999999999988 9
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~ 165 (467)
|+|||+|+... .++...+++|+.++.+++++|++.+++||||+||.++||.. ...+.+|++ +..|.+.|+.+|.
T Consensus 65 d~vih~a~~~~--~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~--~~~~~~E~~--~~~p~~~Y~~sK~ 138 (286)
T 3gpi_A 65 EILVYCVAASE--YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQE--VEEWLDEDT--PPIAKDFSGKRML 138 (286)
T ss_dssp SEEEECHHHHH--HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCC--CSSEECTTS--CCCCCSHHHHHHH
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCC--CCCCCCCCC--CCCCCChhhHHHH
Confidence 99999998532 45677889999999999999999999999999999999643 345678887 5578899999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccc
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~ 245 (467)
.+|++ +++ ++++++||+.+|||+... ++..+.. .. .+++++..++|+|++|+|++++.+++...
T Consensus 139 ~~E~~-~~~-----~~~~ilR~~~v~G~~~~~----~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~--- 202 (286)
T 3gpi_A 139 EAEAL-LAA-----YSSTILRFSGIYGPGRLR----MIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRS--- 202 (286)
T ss_dssp HHHHH-GGG-----SSEEEEEECEEEBTTBCH----HHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHT---
T ss_pred HHHHH-Hhc-----CCeEEEecccccCCCchh----HHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhc---
Confidence 99999 664 899999999999998763 3444444 32 34778899999999999999999998411
Q ss_pred ccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceE
Q 012270 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325 (467)
Q Consensus 246 ~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 325 (467)
....+++||+++++++|+.|+++.+.+.+|.+.+....| .......
T Consensus 203 ~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----------------------------------~~~~~~~ 248 (286)
T 3gpi_A 203 HAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----------------------------------PVQGNKK 248 (286)
T ss_dssp TSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----------------------------------CBCSSCE
T ss_pred cCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----------------------------------ccCCCeE
Confidence 145688999999999999999999999999876542211 0123567
Q ss_pred eehhhHhhhCCCcccc-ChHHHHHHHHHHHHHhhh
Q 012270 326 FDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 326 ~d~~k~~~~lG~~p~~-~l~e~i~~~i~~~~~~~~ 359 (467)
+|++|++ +|||+|++ +++|+++++++|+.....
T Consensus 249 ~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~~~~~ 282 (286)
T 3gpi_A 249 LSNARLL-ASGYQLIYPDYVSGYGALLAAMREGHH 282 (286)
T ss_dssp ECCHHHH-HTTCCCSSCSHHHHHHHHHHHHTC---
T ss_pred eeHHHHH-HcCCCCcCCcHHHHHHHHHHHHhcccc
Confidence 8999998 79999998 699999999999977543
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=332.98 Aligned_cols=276 Identities=18% Similarity=0.181 Sum_probs=234.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+|||||||||||++++++|+++| ++|++++|.. +|++|.+++.++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~--------------------------~D~~d~~~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEE-YDIYPFDKKL--------------------------LDITNISQVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTT-EEEEEECTTT--------------------------SCTTCHHHHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CEEEEecccc--------------------------cCCCCHHHHHHHHHhcCCC
Confidence 499999999999999999999999 5999999832 69999999999998 699
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|+... ...++...+++|+.++.+++++|++.++ |+||+||.++|+.. ...+.+|++ +..|.+.|+.+
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~--~~~~~~E~~--~~~p~~~Y~~s 133 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGD--RPEGYDEFH--NPAPINIYGAS 133 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCC--CSSCBCTTS--CCCCCSHHHHH
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCC--CCCCCCCCC--CCCCCCHHHHH
Confidence 9999999544 3367889999999999999999999998 79999999999643 335788887 55788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|++++.++. +++++||+.+|||+...+++.++..+..+.++.+.++ +.++|+|++|+|++++.+++
T Consensus 134 K~~~E~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~---- 203 (287)
T 3sc6_A 134 KYAGEQFVKELHN----KYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIH---- 203 (287)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhCC----CcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHh----
Confidence 9999999999764 6899999999999888888999988888988877764 78999999999999999997
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (467)
.+. +++||+++++++|+.|+++.+.+.+|.+.+...+|...+ ..+... ...
T Consensus 204 -~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-------------------~~~~~~-------~~~ 254 (287)
T 3sc6_A 204 -TSL--YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEF-------------------GAAAAR-------PKY 254 (287)
T ss_dssp -SCC--CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHH-------------------CCSSCC-------CSB
T ss_pred -CCC--CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhc-------------------CcccCC-------CCc
Confidence 233 679999999999999999999999998876666664321 000000 123
Q ss_pred eEeehhhHhhhCCCccccChHHHHHHHHHHHHH
Q 012270 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (467)
Q Consensus 324 ~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~ 356 (467)
..+|++|++ ++||+|+++++|+++++++|+++
T Consensus 255 ~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 255 SIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp CCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred ccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 567999999 79999999999999999999864
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=343.61 Aligned_cols=297 Identities=18% Similarity=0.137 Sum_probs=239.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+|||||||||||++|+++|+++|.++|++++|...... ... + .++. +.+|++|.+.+.++++
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~---~------~~~~-~~~d~~~~~~~~~~~~~~~ 112 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVN---L------VDLN-IADYMDKEDFLIQIMAGEE 112 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGG---T------TTSC-CSEEEEHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhc---c------cCce-EeeecCcHHHHHHHHhhcc
Confidence 34789999999999999999999999338999999765210 000 1 1233 6789999999999987
Q ss_pred --CCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 84 --GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 84 --~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
++|+|||+|+... ...+++..+++|+.++.+++++|++.++ |+||+||.++|+.. ...+.+|+. +..|.+.|
T Consensus 113 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~--~~~~~~E~~--~~~p~~~Y 187 (357)
T 2x6t_A 113 FGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGR--TSDFIESRE--YEKPLNVF 187 (357)
T ss_dssp CSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSC--SSCCCSSGG--GCCCSSHH
T ss_pred cCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCC--CCCCcCCcC--CCCCCChh
Confidence 5999999999543 4567888999999999999999999999 99999999999643 334678887 55778899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCc-cccccchhHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHA 233 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~Dva~a 233 (467)
+.+|..+|++++.++.+.|++++++||+.+|||+.. ..++.++..+..+.++.+++++++ .++|+|++|+|++
T Consensus 188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 267 (357)
T 2x6t_A 188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADV 267 (357)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHH
Confidence 999999999999998878999999999999999864 467778888888888788888888 8999999999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCC-CCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ-RPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
++.+++. +. +++||+++++++|+.|+++.+.+.+|.+ .+....|.+. .
T Consensus 268 i~~~~~~-----~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------------~---- 316 (357)
T 2x6t_A 268 NLWFLEN-----GV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL--------------------K---- 316 (357)
T ss_dssp HHHHHHH-----CC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGG--------------------T----
T ss_pred HHHHHhc-----CC--CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCccc--------------------c----
Confidence 9999983 33 7899999999999999999999999987 2222333210 0
Q ss_pred hHHHHHHhccceEeehhhHhhhCCC-ccccChHHHHHHHHHHHHHh
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~-~p~~~l~e~i~~~i~~~~~~ 357 (467)
........+|++|+++ ||| .|+++++|+++++++|++++
T Consensus 317 -----~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 317 -----GRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp -----TSCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred -----cccccccccCHHHHHH-cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 0011234678999987 999 78889999999999999653
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=348.87 Aligned_cols=314 Identities=15% Similarity=0.128 Sum_probs=242.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCC------CCcC-CC---CCCC--cCCCCCeEEEEecCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD------PSES-NS---LLPD--SLSSGRAEYHQVDVRD 74 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~------~~~~-~~---~~~~--~~~~~~v~~~~~Dl~d 74 (467)
.+++||||||+||||++++++|+++| ++|++++|....... .... .. .+.. .....+++++.+|++|
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 47899999999999999999999999 599999986431000 0000 00 0000 0013578999999999
Q ss_pred HHHHHHHHhC--CCEEEEcccCCC---CCCChh---hHHHhhHHHHHHHHHHHHhCCC-CeEEEEcCccccccCCCCCCC
Q 012270 75 ISQIKKVLEG--ASTVFYVDATDL---NTDDFY---NCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 75 ~~~l~~~~~~--~D~Vih~aa~~~---~~~~~~---~~~~~nv~g~~~ll~aa~~~~v-~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++++.+++++ +|+|||+||... ...+++ ..+++|+.|+.+++++|++.++ +|+||+||.++||... .+
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~---~~ 165 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN---ID 165 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS---SC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC---CC
Confidence 9999999988 999999999543 122333 4789999999999999999987 5999999999997543 24
Q ss_pred CCCCc------------ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----------------
Q 012270 146 GDETL------------TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------------- 196 (467)
Q Consensus 146 ~~E~~------------p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----------------- 196 (467)
.+|+. +.+..|.+.|+.+|..+|++++.++.+.|++++++||+.||||++.
T Consensus 166 ~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~ 245 (404)
T 1i24_A 166 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245 (404)
T ss_dssp BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred CCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccc
Confidence 55642 1255678899999999999999887667999999999999999762
Q ss_pred --CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCC--cEEEEcCCCCcCHHHHHHHHHH
Q 012270 197 --QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAG--MAFFITNLEPIKFWDFLSIILE 272 (467)
Q Consensus 197 --~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g--~~yni~~~~~~s~~el~~~i~~ 272 (467)
..++.++..+..|+++.+++++++.++|+||+|+|++++.+++ .+...| ++||+++ +++|+.|+++.+.+
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~-----~~~~~g~~~~yni~~-~~~s~~e~~~~i~~ 319 (404)
T 1i24_A 246 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA-----NPAKAGEFRVFNQFT-EQFSVNELASLVTK 319 (404)
T ss_dssp TCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH-----SCCCTTCEEEEEECS-EEEEHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHh-----CcccCCCceEEEECC-CCCcHHHHHHHHHH
Confidence 4577888888888888888999999999999999999999998 344445 7999998 89999999999999
Q ss_pred H---cCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHH
Q 012270 273 G---LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349 (467)
Q Consensus 273 ~---~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~ 349 (467)
. +|.+.+...+|.+. . ........+|++|++ +|||+|++++++++++
T Consensus 320 ~~~~~g~~~~~~~~p~~~----------------------~-------~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~ 369 (404)
T 1i24_A 320 AGSKLGLDVKKMTVPNPR----------------------V-------EAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDS 369 (404)
T ss_dssp HHHTTTCCCCEEEECCSS----------------------C-------SCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHH
T ss_pred HHHhhCCCccccccCccc----------------------C-------ccccceEecCHHHHH-HcCCCcCcCHHHHHHH
Confidence 8 78765544444321 0 000123457999998 5999999999999999
Q ss_pred HHHHHHHhhhc
Q 012270 350 TIQSFSHLARD 360 (467)
Q Consensus 350 ~i~~~~~~~~~ 360 (467)
+++|++.....
T Consensus 370 ~~~~~~~~~~~ 380 (404)
T 1i24_A 370 LLNFAVQFKDR 380 (404)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHhhhhc
Confidence 99999876543
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-42 Score=337.00 Aligned_cols=307 Identities=18% Similarity=0.199 Sum_probs=235.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|+||||||+||||++++++|+++| ++|++++|.........+. +.. ....+++++.+|++|++++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D 75 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPV---IER-LGGKHPTFVEGDIRNEALMTEILHDHAID 75 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHH---HHH-HHTSCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCCcchhHHHH---HHh-hcCCcceEEEccCCCHHHHHHHhhccCCC
Confidence 589999999999999999999999 5999998754311000000 000 012467889999999999999887 499
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCC-CChHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCD 162 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~~~Y~~ 162 (467)
+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++||.. ...+.+|+.| ..| .+.|+.
T Consensus 76 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~--~~~~~~e~~~--~~~~~~~Y~~ 151 (338)
T 1udb_A 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDN--PKIPYVESFP--TGTPQSPYGK 151 (338)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSC--CSSSBCTTSC--CCCCSSHHHH
T ss_pred EEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCC--CCCCcCcccC--CCCCCChHHH
Confidence 9999999543 2345677899999999999999999999999999999999643 3346778764 233 789999
Q ss_pred HHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCC------------CCcHHHHHHHhc-CCCceEEec------CCCccc
Q 012270 163 LKAQAEALVLFANNID-GLLTCALRPSNVFGPGD------------TQLVPLLVNLAK-PGWTKFIIG------SGENMS 222 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~-g~~~~ilRp~~i~G~~~------------~~~~~~~~~~~~-~g~~~~~~g------~g~~~~ 222 (467)
+|..+|++++.++.+. +++++++||+++|||+. ..+++.+...+. .+..+.+++ +|++.+
T Consensus 152 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 231 (338)
T 1udb_A 152 SKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231 (338)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceee
Confidence 9999999999987655 89999999999999842 124555555544 445555555 567889
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHh
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~ 302 (467)
+|||++|+|++++.+++... ....+++||+++++++|+.|+++.+.+.+|.+.+....|...
T Consensus 232 ~~i~v~Dva~a~~~~l~~~~---~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------- 293 (338)
T 1udb_A 232 DYIHVMDLADGHVVAMEKLA---NKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE--------------- 293 (338)
T ss_dssp CEEEHHHHHHHHHHHHHHHT---TCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCT---------------
T ss_pred eeEEHHHHHHHHHHHHhhhh---ccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCC---------------
Confidence 99999999999999987421 012237999999999999999999999999875543333100
Q ss_pred cccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 303 ~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.. .....+|++|++++|||+|+++++|+++++++|++++.
T Consensus 294 -----~~-----------~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~ 333 (338)
T 1udb_A 294 -----GD-----------LPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_dssp -----TC-----------CSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred -----Cc-----------hhhhhcCHHHHHHHcCCCcCCCHHHHHHHHHHHHHhcc
Confidence 00 01345799999999999999999999999999998753
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=340.95 Aligned_cols=295 Identities=14% Similarity=0.126 Sum_probs=233.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
+|+||||||+||||++++++|+++ | ++|++++|++... . ..++++++.+|++|++++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~-----------~--~~~~~~~~~~D~~d~~~~~~~~~~~ 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIRKLNT-----------D--VVNSGPFEVVNALDFNQIEHLVEVH 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESCCCSC-----------H--HHHSSCEEECCTTCHHHHHHHHHHT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCCCccc-----------c--ccCCCceEEecCCCHHHHHHHHhhc
Confidence 578999999999999999999999 8 5999999976510 0 01257789999999999999998
Q ss_pred CCCEEEEcccCCC--CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 84 GASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 84 ~~D~Vih~aa~~~--~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++|+... ...+.+|+. +..|.+.|+
T Consensus 68 ~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~-~~~~~~e~~--~~~~~~~Y~ 144 (312)
T 2yy7_A 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTT-PKENTPQYT--IMEPSTVYG 144 (312)
T ss_dssp TCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTS-CSSSBCSSC--BCCCCSHHH
T ss_pred CCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCC-CCCCccccC--cCCCCchhH
Confidence 8999999999543 23567889999999999999999999999999999999997533 223567776 457789999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------C-cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~ 234 (467)
.+|..+|++++.++.+.|++++++||+.+|||+.. . ..+.+...+..+ .+..++++++.++|+|++|+|+++
T Consensus 145 ~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 145 ISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADK-KYECFLSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTS-EEEESSCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCC-CeEEecCCCceeeeeeHHHHHHHH
Confidence 99999999999987767999999999999997532 1 334444444444 456778888999999999999999
Q ss_pred HHHHHHhccccccC---CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCC
Q 012270 235 VCAAEALDSRMVSV---AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (467)
Q Consensus 235 ~~al~~~~~~~~~~---~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~ 311 (467)
+.++++ +.. .|++||+++ +++|+.|+++.+.+.+|.. +....|.
T Consensus 224 ~~~~~~-----~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~~-~i~~~~~-------------------------- 270 (312)
T 2yy7_A 224 INIMKA-----PVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPEF-TITYEPD-------------------------- 270 (312)
T ss_dssp HHHHHS-----CGGGCCCSSCEECCS-EEECHHHHHHHHHTTCTTC-EEEECCC--------------------------
T ss_pred HHHHhC-----cccccccCceEEeCC-CccCHHHHHHHHHHHCCCC-ceEeccC--------------------------
Confidence 999983 322 247999997 8899999999999998831 1111111
Q ss_pred chHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHH
Q 012270 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (467)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~ 355 (467)
. ..... ......+|++|++++|||+|+++++|+++++++|++
T Consensus 271 ~-~~~~~-~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 271 F-RQKIA-DSWPASIDDSQAREDWDWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp T-HHHHH-TTSCSSBCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_pred c-ccccc-ccccccCCHHHHHHHcCCCCCCCHHHHHHHHHHHhC
Confidence 0 01100 112346899999999999999999999999999974
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=338.28 Aligned_cols=294 Identities=18% Similarity=0.140 Sum_probs=219.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-----
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG----- 84 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~----- 84 (467)
+|||||||||||++++++|+++|.++|++++|.+.... ... .+++. +.+|++|.+.+.+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--------~~~---~~~~~-~~~d~~~~~~~~~~~~~~~~~~ 68 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--------FVN---LVDLN-IADYMDKEDFLIQIMAGEEFGD 68 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--------GHH---HHTSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--------hhh---cCcce-eccccccHHHHHHHHhccccCC
Confidence 58999999999999999999999338999998764210 000 01223 67899999999999985
Q ss_pred CCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|+|||+|+... +..+++..+++|+.++.+++++|++.++ |+||+||.++||.. ...+.+|++ +..|.+.|+.+
T Consensus 69 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~--~~~~~~E~~--~~~p~~~Y~~s 143 (310)
T 1eq2_A 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGR--TSDFIESRE--YEKPLNVYGYS 143 (310)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTC--CSCBCSSGG--GCCCSSHHHHH
T ss_pred CcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCC--CCCCCCCCC--CCCCCChhHHH
Confidence 999999999543 4567888999999999999999999999 99999999999643 234678887 55778899999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCc-cccccchhHHHHHHHH
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHAHVC 236 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~Dva~a~~~ 236 (467)
|..+|++++.++++.|++++++||+.+|||+.. .+++.++..+..++++.+++++++ .++|+|++|+|++++.
T Consensus 144 K~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~ 223 (310)
T 1eq2_A 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (310)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHH
Confidence 999999999998878999999999999999864 467788888888888778888888 9999999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCC-CCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ-RPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
+++. +. +++||+++++++|+.|+++.+.+.+|.+ ......|.+.
T Consensus 224 ~~~~-----~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------------------- 268 (310)
T 1eq2_A 224 FLEN-----GV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL---------------------------- 268 (310)
T ss_dssp HHHH-----CC--CEEEEESCSCCBCHHHHHHHC----------------------------------------------
T ss_pred HHhc-----CC--CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhh----------------------------
Confidence 9983 33 7899999999999999999999999876 2221221110
Q ss_pred HHHHhccceEeehhhHhhhCCC-ccccChHHHHHHHHHHHHHh
Q 012270 316 IVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~-~p~~~l~e~i~~~i~~~~~~ 357 (467)
.........+|++|+++ +|| .|.++++|+++++++|++++
T Consensus 269 -~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 269 -KGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp ----CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHHTC--
T ss_pred -hcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHHHHhc
Confidence 00111234678999987 999 78889999999999998753
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=339.29 Aligned_cols=326 Identities=15% Similarity=0.082 Sum_probs=247.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC----cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK----CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
+|+|||||||||||++++++|+++|. ++|++++|.+.... ....+++++.+|++|++++.++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------------~~~~~~~~~~~Dl~d~~~~~~~~~ 68 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------------HEDNPINYVQCDISDPDDSQAKLS 68 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------------CCSSCCEEEECCTTSHHHHHHHHT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------------cccCceEEEEeecCCHHHHHHHHh
Confidence 37899999999999999999999992 39999999765211 123578999999999999999999
Q ss_pred C---CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEE-------EEcCccccccCCCCCCCCCCCcc
Q 012270 84 G---ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLV-------YNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 ~---~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v-------~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
+ +|+|||+|+... .++...+++|+.++.+++++|++. +++|+| |+||.++||.......+.+|++|
T Consensus 69 ~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~ 146 (364)
T 2v6g_A 69 PLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP 146 (364)
T ss_dssp TCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred cCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence 8 999999999653 467889999999999999999998 899998 89999999765333457788875
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCCCC-ceEEEEeCCCcccCCCCC----cHHH-HHHHh--cCCCceEEecCCC---c
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGDTQ----LVPL-LVNLA--KPGWTKFIIGSGE---N 220 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~g-~~~~ilRp~~i~G~~~~~----~~~~-~~~~~--~~g~~~~~~g~g~---~ 220 (467)
..+ +.+.| ..+|++++++++++| ++++++||+.+|||++.. .++. +...+ ..|.++.++|+++ .
T Consensus 147 ~~~-~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 221 (364)
T 2v6g_A 147 RLK-YMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDG 221 (364)
T ss_dssp CCS-SCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHS
T ss_pred CCc-cchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccc
Confidence 321 35677 458999999887777 999999999999998653 1233 23334 3677666788774 4
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCc--cCChHHHHHHHHHHHHH
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWI 298 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~--~ip~~~~~~~~~~~~~~ 298 (467)
..+++|++|+|++++.+++ .+...|++||+++++++|+.|+++.+.+.+|.+.+.+ .+|.++.+.++...+.+
T Consensus 222 ~~~~~~v~Dva~a~~~~~~-----~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~ 296 (364)
T 2v6g_A 222 YSDCSDADLIAEHHIWAAV-----DPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVW 296 (364)
T ss_dssp CBCCEEHHHHHHHHHHHHH-----CGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHH
T ss_pred cCCCCcHHHHHHHHHHHHh-----CCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHH
Confidence 4788888999999999998 3445688999999999999999999999999887665 78887776665522222
Q ss_pred HHHhcccccCCCCchHH-----HHHHhccc-eEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 299 HEKLGLRTYNHSLSACY-----IVQLASRT-RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 299 ~~~~~~~~~~~p~~~~~-----~~~~~~~~-~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.......+......... ....+... ..+|++|+++ |||+|.++++|+++++++|+++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~g 361 (364)
T 2v6g_A 297 EEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAYK 361 (364)
T ss_dssp HHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHcC
Confidence 22211111111111000 00112245 5789999998 999998899999999999998753
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=334.07 Aligned_cols=290 Identities=12% Similarity=0.036 Sum_probs=232.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
|+|||||||||||++++++|+ +| ++|++++|.+. .+.+|+.|++++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~----------------------~~~~D~~d~~~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV-GNLIALDVHSK----------------------EFCGDFSNPKGVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTCS----------------------SSCCCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC-CeEEEeccccc----------------------cccccCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999 89 59999998652 246899999999999987 99
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|+... +..++...+++|+.++.+++++|++.++ |+||+||.++|+.. ...+.+|++ +..|.+.|+.+
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~--~~~~~~E~~--~~~p~~~Y~~s 131 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGT--GDIPWQETD--ATSPLNVYGKT 131 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCC--TTCCBCTTS--CCCCSSHHHHH
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCC--CCCCCCCCC--CCCCccHHHHH
Confidence 9999999543 3467888999999999999999999998 89999999999643 234678887 55788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|++++.++. +++++||+.+|||+...+++.++..+..+.++.+.|+ +.++|+|++|+|++++.+++...
T Consensus 132 K~~~E~~~~~~~~----~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~- 204 (299)
T 1n2s_A 132 KLAGEKALQDNCP----KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIND--QYGAPTGAELLADCTAHAIRVAL- 204 (299)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEECS--CEECCEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCC----CeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeecC--cccCCeeHHHHHHHHHHHHHHhc-
Confidence 9999999999753 8999999999999877777888888888887767664 78999999999999999998410
Q ss_pred ccccC-CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 012270 244 RMVSV-AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (467)
Q Consensus 244 ~~~~~-~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 322 (467)
... .+++||+++++++|+.|+++.+.+.+|.+.+.+.+|... ..... ..+.. . ....
T Consensus 205 --~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-------------~~~~~--~~~~~-~----~~~~ 262 (299)
T 1n2s_A 205 --NKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELN-------------AVPTS--AYPTP-A----SRPG 262 (299)
T ss_dssp --HCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEE-------------EECST--TSCCS-S----CCCS
T ss_pred --cccccCceEEEeCCCCCCHHHHHHHHHHHhCCCcccccccccc-------------ccccc--cccCc-C----CCCC
Confidence 012 478999999999999999999999998764322211100 00000 00000 0 0113
Q ss_pred ceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
...+|++|++++|||+|+ +++|+++++++|+++.
T Consensus 263 ~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 263 NSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFTT 296 (299)
T ss_dssp BCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHSC
T ss_pred ceeeeHHHHHHhcCCCCC-CHHHHHHHHHHHHHhc
Confidence 467899999999999997 9999999999999763
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=337.07 Aligned_cols=323 Identities=16% Similarity=0.088 Sum_probs=243.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC------CCCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL------SSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|||+||||||+||||++++++|+++| ++|++++|.+..... +. +.... ...+++++.+|++|++++.+
T Consensus 23 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~--~~---~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 96 (375)
T 1t2a_A 23 MRNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNT--GR---IEHLYKNPQAHIEGNMKLHYGDLTDSTCLVK 96 (375)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCC--TT---TGGGC---------CEEEEECCTTCHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccch--hh---HHHHhhhhccccCCCceEEEccCCCHHHHHH
Confidence 34799999999999999999999999 599999997652100 00 11110 23578999999999999999
Q ss_pred HHhC--CCEEEEcccCCCC---CCChhhHHHhhHHHHHHHHHHHHhCCC---CeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 81 VLEG--ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 81 ~~~~--~D~Vih~aa~~~~---~~~~~~~~~~nv~g~~~ll~aa~~~~v---~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++++ +|+|||+|+.... ..++...+++|+.++.+++++|++.++ +||||+||.++|+... ..+.+|++
T Consensus 97 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~--~~~~~E~~-- 172 (375)
T 1t2a_A 97 IINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ--EIPQKETT-- 172 (375)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS--SSSBCTTS--
T ss_pred HHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCC--CCCCCccC--
Confidence 9986 6999999995432 356788999999999999999999988 8999999999996433 34678887
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-Cc----HHHHHHHhcCCC-ceEEecCCCccccccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QL----VPLLVNLAKPGW-TKFIIGSGENMSDFTY 226 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-~~----~~~~~~~~~~g~-~~~~~g~g~~~~~~i~ 226 (467)
+..|.+.|+.+|..+|++++.++.+++++++++||+.+|||+.. .+ +..++..+..|. +...+|++++.++|+|
T Consensus 173 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~ 252 (375)
T 1t2a_A 173 PFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGH 252 (375)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEE
Confidence 44678899999999999999988777999999999999999754 22 334455555564 3456788899999999
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCc--cCChHHHHHHHHHHHHHHHHhcc
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGL 304 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~--~ip~~~~~~~~~~~~~~~~~~~~ 304 (467)
++|+|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+.. .+|.+++.. ..+.
T Consensus 253 v~Dva~a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~----------~~~~ 315 (375)
T 1t2a_A 253 AKDYVEAMWLMLQ-----NDE--PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCK----------ETGK 315 (375)
T ss_dssp HHHHHHHHHHHHH-----SSS--CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEET----------TTCC
T ss_pred HHHHHHHHHHHHh-----cCC--CceEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccccc----------cccc
Confidence 9999999999998 232 36999999999999999999999999864321 133321100 0000
Q ss_pred c--ccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 305 R--TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 305 ~--~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
. ....+...+. ......+|++|++++|||+|+++++|+++++++|+++....
T Consensus 316 ~~~~~~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 316 VHVTVDLKYYRPT----EVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp EEEEECGGGSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCcccCCcc----cchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 0 0000000010 01235679999999999999999999999999999987643
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=325.76 Aligned_cols=276 Identities=16% Similarity=0.134 Sum_probs=229.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
..|+|||||||||||++++++|+++| ++|++++|. .+|++|++++.++++ +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------------------------~~Dl~d~~~~~~~~~~~~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ--------------------------DLDITNVLAVNKFFNEKK 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT--------------------------TCCTTCHHHHHHHHHHHC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc--------------------------cCCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 599999884 269999999999998 7
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|+|||+|+... +..++...+++|+.++.+++++|++.++ |+||+||.++|+.. ...+.+|+. +..|.+.|+
T Consensus 64 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~--~~~~~~E~~--~~~~~~~Y~ 138 (292)
T 1vl0_A 64 PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGE--AKEPITEFD--EVNPQSAYG 138 (292)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSC--CSSCBCTTS--CCCCCSHHH
T ss_pred CCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCC--CCCCCCCCC--CCCCccHHH
Confidence 999999999543 2356788999999999999999999998 99999999999643 234678887 457788999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHh
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~ 241 (467)
.+|..+|++++.++. +++++||+.+||| ...+++.++..+..+.++.+.+ ++.++|+|++|+|++++.+++.
T Consensus 139 ~sK~~~E~~~~~~~~----~~~~lR~~~v~G~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~- 210 (292)
T 1vl0_A 139 KTKLEGENFVKALNP----KYYIVRTAWLYGD-GNNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE- 210 (292)
T ss_dssp HHHHHHHHHHHHHCS----SEEEEEECSEESS-SSCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCC----CeEEEeeeeeeCC-CcChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhc-
Confidence 999999999999753 6899999999999 5567777777777777766665 4788999999999999999983
Q ss_pred ccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhc
Q 012270 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS 321 (467)
Q Consensus 242 ~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 321 (467)
+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|.+.. ..+.. ..
T Consensus 211 ----~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-------------------~~~~~-------~~ 258 (292)
T 1vl0_A 211 ----K--NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEF-------------------PRPAK-------RP 258 (292)
T ss_dssp ----T--CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTS-------------------CCSSC-------CC
T ss_pred ----C--CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeecccccc-------------------CcccC-------CC
Confidence 3 6789999999999999999999999998765544543210 00000 01
Q ss_pred cceEeehhhHhhhCCCccccChHHHHHHHHHHHH
Q 012270 322 RTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (467)
Q Consensus 322 ~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~ 355 (467)
....+|++|++++|||+|+ +++|+++++++|++
T Consensus 259 ~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~ 291 (292)
T 1vl0_A 259 KYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 291 (292)
T ss_dssp SBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhc
Confidence 2456899999999999998 99999999999985
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=328.37 Aligned_cols=292 Identities=18% Similarity=0.166 Sum_probs=232.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
..||+||||||+||||++++++|+++| ++|++++|...... +. +.. .++++++.+|++|++++.+++++
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~---l~~---~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRR---EH---LKD---HPNLTFVEGSIADHALVNQLIGDL 88 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG---GG---SCC---CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccch---hh---Hhh---cCCceEEEEeCCCHHHHHHHHhcc
Confidence 467899999999999999999999999 59999999754110 00 111 15789999999999999999988
Q ss_pred -CCEEEEcccCCCC--CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccC--CCCCCCCCCCcccCCCCC-C
Q 012270 85 -ASTVFYVDATDLN--TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDG--SHDIHNGDETLTCCWKFQ-D 158 (467)
Q Consensus 85 -~D~Vih~aa~~~~--~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~--~~~~~~~~E~~p~~~~~~-~ 158 (467)
+|+|||+|+.... ..+++ +++|+.++.+++++|++.+++|+||+||.++|+.. .... +.+|+. .|. +
T Consensus 89 ~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~----~p~~~ 161 (333)
T 2q1w_A 89 QPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR----NPANS 161 (333)
T ss_dssp CCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC----CCTTC
T ss_pred CCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC----CCCCC
Confidence 9999999995432 23333 89999999999999999999999999999999611 1122 667764 456 8
Q ss_pred hHHHHHHHHHHHHHh-hcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 159 LMCDLKAQAEALVLF-ANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~-~~~~~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
.|+.+|..+|++++. ++ +++++||+++|||+.. .+++.++..+..+. .+++ +++.++|+|++|+|++++.
T Consensus 162 ~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~~ 233 (333)
T 2q1w_A 162 SYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNVSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATVR 233 (333)
T ss_dssp HHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCCSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCcCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHHH
Confidence 999999999999998 75 7899999999999842 46777777776766 3455 6778999999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
+++ .+. |++||+++++++|+.|+++.+.+.+|.+ +...+|.+. ..
T Consensus 234 ~~~-----~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--------------------~~------- 278 (333)
T 2q1w_A 234 AVD-----GVG--HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRE--------------------LG------- 278 (333)
T ss_dssp HHT-----TCC--CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEE--------------------CC-------
T ss_pred HHh-----cCC--CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCC--------------------cc-------
Confidence 987 233 8899999999999999999999999987 433333210 00
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
...+.....+|++|+++. ||+|+++++|+++++++|+++..
T Consensus 279 ~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 279 PDDAPSILLDPSRTIQDF-GKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp TTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHC
T ss_pred cccccccccCCHHHHHhc-CCCcCCCHHHHHHHHHHHHHHHC
Confidence 001123467899999997 99999999999999999998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=327.94 Aligned_cols=289 Identities=18% Similarity=0.178 Sum_probs=232.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+|+||||||+||||++++++|+++| ++|++++|...... +. ... . .+++++.+|++|.+++.++++
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~---~~~-l--~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKR---EV---LPP-V--AGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCG---GG---SCS-C--TTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccch---hh---hhc-c--CCceEEEeeCCCHHHHHHHHhhc
Confidence 456899999999999999999999999 59999999654110 00 011 1 578999999999999999999
Q ss_pred CCCEEEEcccCCCC--CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 84 GASTVFYVDATDLN--TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 84 ~~D~Vih~aa~~~~--~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
++|+|||+|+.... ..++. +++|+.++.+++++|++.+++|+||+||.++|+.......+.+|++ .|.+.|+
T Consensus 88 ~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~----~~~~~Y~ 161 (330)
T 2pzm_A 88 KPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT----APFTSYG 161 (330)
T ss_dssp CCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC----CCCSHHH
T ss_pred CCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC----CCCChHH
Confidence 99999999995432 23344 8999999999999999999999999999999964322112567764 5678999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEecCCCccccccchhHHHH-HHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH-AHVCAAE 239 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~-a~~~al~ 239 (467)
.+|..+|++++.+ +++++++||+++|||+.. .+++.++..+..+. .++++++ .++|+|++|+|+ +++.+++
T Consensus 162 ~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~~ 234 (330)
T 2pzm_A 162 ISKTAGEAFLMMS----DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQE 234 (330)
T ss_dssp HHHHHHHHHHHTC----SSCEEEEEECEEECTTCCSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHc----CCCEEEEeeeeeECcCCCCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHhh
Confidence 9999999999886 789999999999999863 46667777766665 4556666 899999999999 9999887
Q ss_pred HhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 012270 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (467)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (467)
.+. |++||+++++++|+.|+++.+.+.+|.+ +...+|.+ +
T Consensus 235 -----~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~-----------------------~--------- 274 (330)
T 2pzm_A 235 -----GRP--TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVV-----------------------A--------- 274 (330)
T ss_dssp -----TCC--CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEE-----------------------C---------
T ss_pred -----cCC--CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCC-----------------------c---------
Confidence 233 8899999999999999999999999987 44334321 0
Q ss_pred hccceEeehhhH-----hhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 320 ASRTRTFDCIAA-----QKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 320 ~~~~~~~d~~k~-----~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
......+|++|+ ++ |||+|+++++|+++++++|+++..
T Consensus 275 ~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~~~~~~~~~ 317 (330)
T 2pzm_A 275 PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQLAWYDKYG 317 (330)
T ss_dssp CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred chhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHHHHHHHhhC
Confidence 012345788888 77 999998899999999999998764
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=336.11 Aligned_cols=331 Identities=16% Similarity=0.110 Sum_probs=240.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-----CCCCeEEEEecCCCHHHHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-----SSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
||+||||||+||||++++++|+++| ++|++++|+...... +. +.... ...+++++.+|++|++++.+++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNT--ER---VDHIYQDPHTCNPKFHLHYGDLSDTSNLTRIL 74 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC--------------------------CCEEECCCCSSCHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccch--HH---HHHHhhccccCCCceEEEECCCCCHHHHHHHH
Confidence 5799999999999999999999999 599999997642100 00 11110 1357889999999999999998
Q ss_pred hC--CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCC---CeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 83 EG--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 83 ~~--~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v---~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
++ +|+|||+|+... ...++...+++|+.++.+++++|++.++ +|+||+||.++||... ..+.+|+. +.
T Consensus 75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~--~~~~~E~~--~~ 150 (372)
T 1db3_A 75 REVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ--EIPQKETT--PF 150 (372)
T ss_dssp HHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC--SSSBCTTS--CC
T ss_pred HhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCC--CCCCCccC--CC
Confidence 86 799999999432 3456778899999999999999999998 8999999999996433 34678887 44
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCC-ceEEecCCCccccccchh
Q 012270 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-~----~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~ 228 (467)
.|.+.|+.+|..+|++++.++.+++++++++|++.+|||+... + +..++..+..|. +...+|++++.++|+|++
T Consensus 151 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~ 230 (372)
T 1db3_A 151 YPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230 (372)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHH
Confidence 6788999999999999999887779999999999999997542 2 345555666675 345678899999999999
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCcc--CChH-HHHHHHHHHHHHHHHhcc-
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK--LPTG-VVWYIILLVKWIHEKLGL- 304 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~--ip~~-~~~~~~~~~~~~~~~~~~- 304 (467)
|+|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+... +|.+ ++..+. ..++....++.
T Consensus 231 Dva~a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~ 302 (372)
T 1db3_A 231 DYVKMQWMMLQ-----QEQ--PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVT-GHDAPGVKPGDV 302 (372)
T ss_dssp HHHHHHHHTTS-----SSS--CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEEC-SSSCTTCCTTCE
T ss_pred HHHHHHHHHHh-----cCC--CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccc-cccccccccccc
Confidence 99999999886 222 479999999999999999999999997543211 1110 000000 00000000000
Q ss_pred -cccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 305 -RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 305 -~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
.........+. ......+|++|++++|||+|+++++|+++++++|+++....
T Consensus 303 ~~~~~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 355 (372)
T 1db3_A 303 IIAVDPRYFRPA----EVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355 (372)
T ss_dssp EEEECGGGCCCC----C-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred eeeccccccCCC----chhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhc
Confidence 00000000010 01234579999999999999999999999999999987643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=321.82 Aligned_cols=277 Identities=17% Similarity=0.130 Sum_probs=219.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|||+|||||| ||||++|+++|+++| ++|++++|++... ......+++++.+|+.|.+ ++++|
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~D~~d~~-----~~~~d 65 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPDQM-----------EAIRASGAEPLLWPGEEPS-----LDGVT 65 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGGGH-----------HHHHHTTEEEEESSSSCCC-----CTTCC
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChhhh-----------hhHhhCCCeEEEecccccc-----cCCCC
Confidence 6789999998 999999999999999 5999999976511 1112357999999999944 78899
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHh--CCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE--CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~--~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
+|||+|+..... ...+.+++++|++ .+++||||+||.++||.. ...+.+|++ +..|.+.|+.+|
T Consensus 66 ~vi~~a~~~~~~----------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~--~~~~~~E~~--~~~p~~~Y~~sK 131 (286)
T 3ius_A 66 HLLISTAPDSGG----------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDH--DGAWVDETT--PLTPTAARGRWR 131 (286)
T ss_dssp EEEECCCCBTTB----------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCC--TTCEECTTS--CCCCCSHHHHHH
T ss_pred EEEECCCccccc----------cHHHHHHHHHHHhhcCCceEEEEeecceecCCC--CCCCcCCCC--CCCCCCHHHHHH
Confidence 999999954321 1235789999999 689999999999999643 345678887 557889999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccc
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~ 244 (467)
..+|++++.+ .|++++++||+.+|||+... +..+..|....+.++ ++.++|+|++|+|++++.+++
T Consensus 132 ~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~-----~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~----- 197 (286)
T 3ius_A 132 VMAEQQWQAV---PNLPLHVFRLAGIYGPGRGP-----FSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMA----- 197 (286)
T ss_dssp HHHHHHHHHS---TTCCEEEEEECEEEBTTBSS-----STTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhh---cCCCEEEEeccceECCCchH-----HHHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHh-----
Confidence 9999999997 68999999999999998654 234556776666665 578999999999999999998
Q ss_pred cccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccce
Q 012270 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324 (467)
Q Consensus 245 ~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (467)
.+. .|++||+++++++|+.|+++.+.+.+|.+.+. .+|.. .....+.....+....
T Consensus 198 ~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~----------------------~~~~~~~~~~~~~~~~ 253 (286)
T 3ius_A 198 RPD-PGAVYNVCDDEPVPPQDVIAYAAELQGLPLPP-AVDFD----------------------KADLTPMARSFYSENK 253 (286)
T ss_dssp SCC-TTCEEEECCSCCBCHHHHHHHHHHHHTCCCCC-EEEGG----------------------GSCCCHHHHHTTSCCC
T ss_pred CCC-CCCEEEEeCCCCccHHHHHHHHHHHcCCCCCc-ccchh----------------------hhccChhHHHhhcCCc
Confidence 333 67899999999999999999999999987543 22211 0111222223334567
Q ss_pred EeehhhHhhhCCCcccc-ChHHHHHHHHHH
Q 012270 325 TFDCIAAQKHIGYSPVV-SLEEGVSSTIQS 353 (467)
Q Consensus 325 ~~d~~k~~~~lG~~p~~-~l~e~i~~~i~~ 353 (467)
.+|++|++++|||+|++ +++|+++++++.
T Consensus 254 ~~d~~k~~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 254 RVRNDRIKEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp EECCHHHHHTTCCCCSCSSHHHHHHHHHHT
T ss_pred eeehHHHHHHhCCCCCcCCHHHHHHHHHHh
Confidence 89999999999999998 799999999863
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=322.80 Aligned_cols=294 Identities=18% Similarity=0.130 Sum_probs=231.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
+||||||+||||++++++|+++ | ++|++++|.... . .+++++.+|++|++++.++++ ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~----------~------~~~~~~~~D~~d~~~~~~~~~~~~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQRD----------T------GGIKFITLDVSNRDEIDRAVEKYSI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESSCCC----------C------TTCCEEECCTTCHHHHHHHHHHTTC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCCCcc----------c------cCceEEEecCCCHHHHHHHHhhcCC
Confidence 5899999999999999999999 7 599999986541 0 146789999999999999998 89
Q ss_pred CEEEEcccCCC--CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 86 STVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 86 D~Vih~aa~~~--~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++|+... +..+.+|+. +..|.+.|+.+
T Consensus 64 d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~-~~~~~~e~~--~~~p~~~Y~~s 140 (317)
T 3ajr_A 64 DAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPET-PKNKVPSIT--ITRPRTMFGVT 140 (317)
T ss_dssp CEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTS-CSSSBCSSS--CCCCCSHHHHH
T ss_pred cEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCC-CCCCccccc--cCCCCchHHHH
Confidence 99999999542 23567889999999999999999999999999999999997432 223566766 45788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------C-cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
|..+|++++.++.++|++++++||+.+||+... . ..+.+...+.. +....+++++..++|+|++|+|++++.
T Consensus 141 K~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~Dva~a~~~ 219 (317)
T 3ajr_A 141 KIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKR-EKYKCYLAPNRALPMMYMPDALKALVD 219 (317)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTT-CCEEECSCTTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhC-CCceeecCccceeeeeEHHHHHHHHHH
Confidence 999999999887767999999999999997531 1 23334443444 445677788889999999999999999
Q ss_pred HHHHhccccccC---CCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch
Q 012270 237 AAEALDSRMVSV---AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (467)
Q Consensus 237 al~~~~~~~~~~---~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 313 (467)
+++. +.. .|++||+++ +.+|+.|+++.+.+.+|.. +....|..
T Consensus 220 ~l~~-----~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~~-~i~~~~~~--------------------------- 265 (317)
T 3ajr_A 220 LYEA-----DRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPEF-EIEYKEDF--------------------------- 265 (317)
T ss_dssp HHHC-----CGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCSC-CEEECCCH---------------------------
T ss_pred HHhC-----CccccccCceEecCC-ccccHHHHHHHHHHHCCcc-cccccccc---------------------------
Confidence 9873 321 357999997 6899999999999998732 21111210
Q ss_pred HHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 314 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
..... ......+|++|++++|||+|+++++|+++++++|+++...
T Consensus 266 ~~~~~-~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 310 (317)
T 3ajr_A 266 RDKIA-ATWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLG 310 (317)
T ss_dssp HHHHH-TTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred chhhc-cccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 00000 0112457999999999999999999999999999987643
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-41 Score=335.23 Aligned_cols=309 Identities=16% Similarity=0.140 Sum_probs=238.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCC-CeEEEEecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSG-RAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~-~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+|+||||||+||||++++++|+++| ++|++++|........... .+.... ..+ +++++.+|++|.+++.+++++
T Consensus 28 ~k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 104 (381)
T 1n7h_A 28 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRIN--HIYIDPHNVNKALMKLHYADLTDASSLRRWIDV 104 (381)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTT--TTC--------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccchhhh--hhhhccccccccceEEEECCCCCHHHHHHHHHh
Confidence 3799999999999999999999999 5999999976521000000 010000 012 789999999999999999986
Q ss_pred --CCEEEEcccCCCC---CCChhhHHHhhHHHHHHHHHHHHhCCCC-----eEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 85 --ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVR-----RLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 85 --~D~Vih~aa~~~~---~~~~~~~~~~nv~g~~~ll~aa~~~~v~-----r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
+|+|||+|+.... ..++...+++|+.++.+++++|++.+++ ||||+||.++||.... +.+|++ +.
T Consensus 105 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~---~~~E~~--~~ 179 (381)
T 1n7h_A 105 IKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP---PQSETT--PF 179 (381)
T ss_dssp HCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS---SBCTTS--CC
T ss_pred cCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC---CCCCCC--CC
Confidence 6999999995442 3567889999999999999999998776 9999999999975432 778887 45
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCC-ceEEecCCCccccccchh
Q 012270 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-~----~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~ 228 (467)
.|.+.|+.+|..+|++++.++.+.+++++++|++++|||+... + +..++..+..|. ....++++++.++|+|++
T Consensus 180 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~ 259 (381)
T 1n7h_A 180 HPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAG 259 (381)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHH
Confidence 6788999999999999999887678999999999999997542 2 334444555554 334678888999999999
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC-CccCChHHHHHHHHHHHHHHHHhccccc
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 307 (467)
|+|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+ .+.++..
T Consensus 260 Dva~a~~~~~~-----~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------------- 311 (381)
T 1n7h_A 260 DYVEAMWLMLQ-----QEK--PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR--------------------- 311 (381)
T ss_dssp HHHHHHHHHHT-----SSS--CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG---------------------
T ss_pred HHHHHHHHHHh-----CCC--CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcc---------------------
Confidence 99999999987 222 469999999999999999999999997532 1111100
Q ss_pred CCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 308 ~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
...+. ......+|++|++++|||+|+++++|+++++++|+.++..
T Consensus 312 ---~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 356 (381)
T 1n7h_A 312 ---YFRPA----EVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAK 356 (381)
T ss_dssp ---GSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ---cCCcc----ccccccCCHHHHHHhcCCcccCCHHHHHHHHHHHHHhhcc
Confidence 00000 0123457999999999999988999999999999988754
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=328.93 Aligned_cols=323 Identities=15% Similarity=0.113 Sum_probs=243.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+||||||+||||++++++|+++| ++|++++|++..... .. +.......+++++.+|++|++++.+++++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~--~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 75 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFAS--WR---LKELGIENDVKIIHMDLLEFSNIIRTIEKVQ 75 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCCSTTTT--HH---HHHTTCTTTEEECCCCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCccccc--cc---HhhccccCceeEEECCCCCHHHHHHHHHhcC
Confidence 35899999999999999999999999 599999997652110 00 11111234789999999999999999986
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCC-CeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v-~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
+|+|||+|+... +..+++..+++|+.++.+++++|++.++ +|+||+||.++||... ..+.+|+. +..|.+.|
T Consensus 76 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~e~~--~~~~~~~Y 151 (345)
T 2z1m_A 76 PDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQ--EIPQTEKT--PFYPRSPY 151 (345)
T ss_dssp CSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCS--SSSBCTTS--CCCCCSHH
T ss_pred CCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC--CCCCCccC--CCCCCChh
Confidence 699999999543 2467888999999999999999999887 8999999999996543 34677877 45678899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCCc-eEEecCCCccccccchhHHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAHAH 234 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-~----~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~Dva~a~ 234 (467)
+.+|..+|++++.++.+.+++++++|+.++|||+... . +..++..+..+.. ....+++++.++|+|++|+|+++
T Consensus 152 ~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~ 231 (345)
T 2z1m_A 152 AVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAM 231 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHH
Confidence 9999999999999887778999999999999997532 2 2333444555643 34678888899999999999999
Q ss_pred HHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCc--cCChHHHHHHHHHHHHHHHHhccc--ccCCC
Q 012270 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLR--TYNHS 310 (467)
Q Consensus 235 ~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~--~ip~~~~~~~~~~~~~~~~~~~~~--~~~~p 310 (467)
+.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+.. .+|.+++. ...+.. ....+
T Consensus 232 ~~~~~-----~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~----------~~~~~~~~~~~~~ 294 (345)
T 2z1m_A 232 WLMMQ-----QPE--PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGID----------RNTGKVIVEVSEE 294 (345)
T ss_dssp HHHHT-----SSS--CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE----------TTTCCEEEEECGG
T ss_pred HHHHh-----CCC--CceEEEeCCCCccHHHHHHHHHHHhCCCcccccccccccccc----------ccccccccccCcc
Confidence 99987 222 36999999999999999999999999874321 13322110 000000 00000
Q ss_pred CchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 311 LSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 311 ~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
...+. ......+|++|++++|||+|+++++|+++++++|+.++...
T Consensus 295 ~~~~~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 340 (345)
T 2z1m_A 295 FFRPA----EVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340 (345)
T ss_dssp GSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCC----CcceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhcc
Confidence 00010 11234579999999999999989999999999999887543
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=356.71 Aligned_cols=317 Identities=17% Similarity=0.173 Sum_probs=248.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHH-HHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~~ 84 (467)
++|+|||||||||||++++++|+++ | ++|++++|+... ........+++++.+|++|.++ +.+++++
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~~~~----------~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~ 382 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDA----------ISRFLNHPHFHFVEGDISIHSEWIEYHVKK 382 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESCCTT----------TGGGTTCTTEEEEECCTTTCHHHHHHHHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcCchh----------hhhhccCCceEEEECCCCCcHHHHHHhhcC
Confidence 5689999999999999999999998 7 599999997641 1111224579999999999765 7788899
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc----C-CCC
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----C-WKF 156 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~----~-~~~ 156 (467)
+|+|||+|+... ...++...+++|+.++.+++++|++.+ +|+||+||.++||... ..+.+|+++. + ..|
T Consensus 383 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~--~~~~~E~~~~~~~~p~~~p 459 (660)
T 1z7e_A 383 CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCS--DKYFDEDHSNLIVGPVNKP 459 (660)
T ss_dssp CSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCC--SSSBCTTTCCEEECCTTCT
T ss_pred CCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCC--CcccCCCccccccCcccCC
Confidence 999999999543 235678899999999999999999999 8999999999996532 3456777642 1 245
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
.+.|+.+|..+|++++.++.+.|++++++||+++|||+.. .+++.++..+..|.++.+++++++.++|+|
T Consensus 460 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 539 (660)
T 1z7e_A 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD 539 (660)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEE
Confidence 6689999999999999987667999999999999999863 356777777888888888888899999999
Q ss_pred hhHHHHHHHHHHHHhcccccc--CCCcEEEEcCCC-CcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhc
Q 012270 227 VENVAHAHVCAAEALDSRMVS--VAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~--~~g~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 303 (467)
++|+|++++.+++ .+. ..|++||+++++ ++|+.|+++.+.+.+|.+.....+|.+........ ....+
T Consensus 540 v~Dva~ai~~~l~-----~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~----~~~~~ 610 (660)
T 1z7e_A 540 IRDGIEALYRIIE-----NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES----SSYYG 610 (660)
T ss_dssp HHHHHHHHHHHHH-----CGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECT----HHHHC
T ss_pred HHHHHHHHHHHHh-----CccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhc----ccccc
Confidence 9999999999998 232 467899999986 89999999999999987655444543210000000 00000
Q ss_pred ccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 304 ~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
. ... ......+|++|++++|||+|+++++|+++++++|++++.
T Consensus 611 ~---~~~---------~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~ 653 (660)
T 1z7e_A 611 K---GYQ---------DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653 (660)
T ss_dssp T---TCC---------CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTS
T ss_pred c---ccc---------chhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhc
Confidence 0 000 012356799999999999998899999999999998764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=323.80 Aligned_cols=289 Identities=15% Similarity=0.129 Sum_probs=206.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
|+|+|||||||||||++++++|+++| ++|++++|+... ++ ++.+|++|++++.+++++
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-----------------~~--~~~~Dl~d~~~~~~~~~~~~ 60 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR-----------------PK--FEQVNLLDSNAVHHIIHDFQ 60 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-------------------------------------CHHHHHHHC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC-----------------CC--eEEecCCCHHHHHHHHHhhC
Confidence 35799999999999999999999999 599999986540 12 678999999999999885
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|+|||+|+... +..++...+++|+.++.+++++|++.++ |+||+||.++|+. ...+.+|++ +..|.+.|+
T Consensus 61 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~---~~~~~~E~~--~~~~~~~Y~ 134 (315)
T 2ydy_A 61 PHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG---TNPPYREED--IPAPLNLYG 134 (315)
T ss_dssp CSEEEECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS---SSCSBCTTS--CCCCCSHHH
T ss_pred CCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC---CCCCCCCCC--CCCCcCHHH
Confidence 999999999432 3467788999999999999999999987 9999999999965 234678887 456788999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC---CcHHHHHHHhc-CCCceEEecCCCccccccchhHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT---QLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~---~~~~~~~~~~~-~g~~~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
.+|..+|++++.++ ++++++||+.+|||.+. .+++.++..+. .+.++.+. +++.++|+|++|+|++++.+
T Consensus 135 ~sK~~~e~~~~~~~----~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~ 208 (315)
T 2ydy_A 135 KTKLDGEKAVLENN----LGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQL 208 (315)
T ss_dssp HHHHHHHHHHHHHC----TTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHH
Confidence 99999999999963 57799999999999876 56666666666 67665554 36788999999999999999
Q ss_pred HHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC-CccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~-~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
++... .....+++||+++++++|+.|+++.+.+.+|.+.+ ...+|... ......
T Consensus 209 ~~~~~--~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------------~~~~~~--- 263 (315)
T 2ydy_A 209 AEKRM--LDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSP--------------------VLGAQR--- 263 (315)
T ss_dssp HHHHH--TCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCC--------------------CSSSCC---
T ss_pred HHhhc--cccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheecccccc--------------------ccccCC---
Confidence 87310 01246789999999999999999999999998754 22333100 000000
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
.....+|++|++++ ||+|+++++|+++++++|++++
T Consensus 264 ----~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~ 299 (315)
T 2ydy_A 264 ----PRNAQLDCSKLETL-GIGQRTPFRIGIKESLWPFLID 299 (315)
T ss_dssp ----CSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHGGGCC-
T ss_pred ----CcccccchHHHHhc-CCCCCCCHHHHHHHHHHHHccc
Confidence 12456899999997 9999999999999999999775
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=325.00 Aligned_cols=300 Identities=15% Similarity=0.110 Sum_probs=238.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC------cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
++|+||||||+||||++++++|+++|+ ++|++++|...... . ....+++++.+|++|++++.+
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~----------~-~~~~~~~~~~~Dl~d~~~~~~ 81 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAP----------A-GFSGAVDARAADLSAPGEAEK 81 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCC----------T-TCCSEEEEEECCTTSTTHHHH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccc----------c-ccCCceeEEEcCCCCHHHHHH
Confidence 568999999999999999999999993 38999999764110 0 123468899999999999999
Q ss_pred HHh-CCCEEEEcccCCC--CCCChhhHHHhhHHHHHHHHHHHHhCC-----CCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 81 VLE-GASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 81 ~~~-~~D~Vih~aa~~~--~~~~~~~~~~~nv~g~~~ll~aa~~~~-----v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
+++ ++|+|||+|+... +..++...+++|+.|+.+++++|++.+ ++|+||+||.++|+... ..+.+|++
T Consensus 82 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~--~~~~~E~~-- 157 (342)
T 2hrz_A 82 LVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPL--PYPIPDEF-- 157 (342)
T ss_dssp HHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSC--CSSBCTTC--
T ss_pred HHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCC--CCCcCCCC--
Confidence 985 8999999999543 235678899999999999999999886 89999999999996432 24678887
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCccc-CCCC-----CcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFG-PGDT-----QLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G-~~~~-----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+..|.+.|+.+|..+|++++.++.+.+++.+++|++.+|| |+.. .+++.++..+..+.+..++++++...+++|
T Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (342)
T 2hrz_A 158 HTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHAS 237 (342)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEEC
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEe
Confidence 4567889999999999999999877789999999999998 6542 245667777778887667777777788999
Q ss_pred hhHHHHHHHHHHHHhcccccc---CCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC--CccCChHHHHHHHHHHHHHHHH
Q 012270 227 VENVAHAHVCAAEALDSRMVS---VAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHEK 301 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~---~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~--~~~ip~~~~~~~~~~~~~~~~~ 301 (467)
++|+|++++.+++. +. ..+++||+++ +++|+.|+++.+.+.+|.+.+ ....|....
T Consensus 238 v~Dva~~~~~~~~~-----~~~~~~~~~~~ni~g-~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~------------- 298 (342)
T 2hrz_A 238 PRSAVGFLIHGAMI-----DVEKVGPRRNLSMPG-LSATVGEQIEALRKVAGEKAVALIRREPNEMI------------- 298 (342)
T ss_dssp HHHHHHHHHHHHHS-----CHHHHCSCCEEECCC-EEEEHHHHHHHHHHHHCHHHHTTEEECCCHHH-------------
T ss_pred hHHHHHHHHHHHhc-----cccccCCccEEEcCC-CCCCHHHHHHHHHHHcCcccccceeeccCcch-------------
Confidence 99999999999872 32 2467999964 779999999999999987531 112222110
Q ss_pred hcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHH
Q 012270 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (467)
Q Consensus 302 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~ 355 (467)
... .......+|++|+++ |||+|+++++|+++++++|++
T Consensus 299 -------------~~~-~~~~~~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 299 -------------MRM-CEGWAPGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp -------------HHH-HTTSCCCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred -------------hhh-hcccccccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 000 001123579999999 999999899999999999986
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=348.27 Aligned_cols=318 Identities=17% Similarity=0.204 Sum_probs=240.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
++|+||||||+||||++|+++|+++| ++|++++|.........+. +. .....+++++.+|++|++++.++++ +
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 84 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVAR---LE-VLTKHHIPFYEVDLCDRKGLEKVFKEYK 84 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHH---HH-HHHTSCCCEEECCTTCHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchHHHHHH---Hh-hccCCceEEEEcCCCCHHHHHHHHHhCC
Confidence 46899999999999999999999999 5999999876411000000 00 0113468899999999999999998 8
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCC--CCCCCCCCcccCCCCCCh
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--DIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~--~~~~~~E~~p~~~~~~~~ 159 (467)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++||.... ...+.+|+. +..|.+.
T Consensus 85 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~--~~~p~~~ 162 (699)
T 1z45_A 85 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPTNP 162 (699)
T ss_dssp CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCCSH
T ss_pred CCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccC--CCCCCCh
Confidence 999999999543 224567789999999999999999999999999999999964321 124567776 4467889
Q ss_pred HHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCC------------CcHHHHHHHhc-CCCceEEec------CC
Q 012270 160 MCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAK-PGWTKFIIG------SG 218 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~--~g~~~~ilRp~~i~G~~~~------------~~~~~~~~~~~-~g~~~~~~g------~g 218 (467)
|+.+|..+|++++.++.+ .+++++++||+++|||+.. .+++.+...+. .+.++.++| ++
T Consensus 163 Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 242 (699)
T 1z45_A 163 YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDG 242 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCS
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCC
Confidence 999999999999988654 6899999999999998532 24454544443 234555666 67
Q ss_pred CccccccchhHHHHHHHHHHHHhccc-cccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHH
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSR-MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~-~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~ 297 (467)
++.++||||+|+|++++.+++..... .....+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 243 ~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----------- 311 (699)
T 1z45_A 243 TPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR----------- 311 (699)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC-----------------
T ss_pred CeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCC-----------
Confidence 88999999999999999998742110 012235799999999999999999999999987543222110
Q ss_pred HHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhccc
Q 012270 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362 (467)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~~~ 362 (467)
.+ + .....+|++|++++|||+|+++++|+|+++++|++++....+
T Consensus 312 ----~~----~------------~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~~~ 356 (699)
T 1z45_A 312 ----AG----D------------VLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQ 356 (699)
T ss_dssp -----------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTCSC
T ss_pred ----CC----c------------cccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCcchh
Confidence 00 0 123568999999999999999999999999999988765433
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=311.70 Aligned_cols=283 Identities=16% Similarity=0.092 Sum_probs=218.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|||||||||||||++|+++|+++|| +|++++|++.. ..+..| +...+.++++|+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-~V~~l~R~~~~--------------------~~~~~~----~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-EVTLVSRKPGP--------------------GRITWD----ELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCT--------------------TEEEHH----HHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCc--------------------Ceeecc----hhhHhhccCCCEE
Confidence 7899999999999999999999995 99999997640 012222 2234557889999
Q ss_pred EEcccCC--C-----CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCccccccCCCCCCCCCCCcccCCCCCCh
Q 012270 89 FYVDATD--L-----NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (467)
Q Consensus 89 ih~aa~~--~-----~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~ 159 (467)
||+|+.. . ...+...+++.|+.+|.+|++++++.++ +++|++||+++||+ ....+.+|++ |..+.+.
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~--~~~~~~~E~~--p~~~~~~ 131 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQP--SLTAEYDEDS--PGGDFDF 131 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCC--CSSCCBCTTC--CCSCSSH
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecC--CCCCcccccC--Cccccch
Confidence 9999832 1 1123456889999999999999998865 45999999999964 3445778887 5567788
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
|+..|...|.... ....+++++++||+.+|||++ ..+..+......+.. ..+|+++++++||||+|+|++++.+++
T Consensus 132 ~~~~~~~~e~~~~--~~~~~~~~~~~r~~~v~g~~~-~~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~ 207 (298)
T 4b4o_A 132 FSNLVTKWEAAAR--LPGDSTRQVVVRSGVVLGRGG-GAMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALE 207 (298)
T ss_dssp HHHHHHHHHHHHC--CSSSSSEEEEEEECEEECTTS-HHHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--hhccCCceeeeeeeeEEcCCC-CchhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHh
Confidence 8888888887543 344789999999999999975 345666666666664 567999999999999999999999998
Q ss_pred HhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHH
Q 012270 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (467)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 319 (467)
.+.. +++||+++++++|+.|+++.+++.+|++. .+++|.++++.+.. + .....
T Consensus 208 -----~~~~-~g~yn~~~~~~~t~~e~~~~ia~~lgrp~-~~pvP~~~~~~~~g--~------------------~~~~~ 260 (298)
T 4b4o_A 208 -----ANHV-HGVLNGVAPSSATNAEFAQTFGAALGRRA-FIPLPSAVVQAVFG--R------------------QRAIM 260 (298)
T ss_dssp -----CTTC-CEEEEESCSCCCBHHHHHHHHHHHHTCCC-CCCBCHHHHHHHHC--H------------------HHHHH
T ss_pred -----CCCC-CCeEEEECCCccCHHHHHHHHHHHhCcCC-cccCCHHHHHHHhc--c------------------hhHHH
Confidence 3444 45999999999999999999999999764 46789887764321 0 00111
Q ss_pred hccceEeehhhHhhhCCCcccc-ChHHHHHHHHH
Q 012270 320 ASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQ 352 (467)
Q Consensus 320 ~~~~~~~d~~k~~~~lG~~p~~-~l~e~i~~~i~ 352 (467)
...+.+++++|+++ +||++++ +++++++++++
T Consensus 261 ~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 261 LLEGQKVIPRRTLA-TGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp HHCCCCBCCHHHHH-TTCCCSCCSHHHHHHHHHH
T ss_pred hhCCCEEcHHHHHH-CCCCCCCCCHHHHHHHHHH
Confidence 22345678899986 9999998 69999999887
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=316.10 Aligned_cols=304 Identities=19% Similarity=0.164 Sum_probs=213.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC-CCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+|+||||||+||||++++++|+++| ++|++++| ++.... .... +.... ...+++++.+|++|++++.++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~-~~~~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 75 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKR-DVSF---LTNLPGASEKLHFFNADLSNPDSFAAAIEGC 75 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC----C-CCHH---HHTSTTHHHHEEECCCCTTCGGGGHHHHTTC
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccchh-HHHH---HHhhhccCCceEEEecCCCCHHHHHHHHcCC
Confidence 4789999999999999999999999 59999988 542100 0000 00000 0125788899999999999999999
Q ss_pred CEEEEcccCCC-CCCC-hhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCCCCCCCCCCcccC------CCC
Q 012270 86 STVFYVDATDL-NTDD-FYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCC------WKF 156 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~-~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~------~~~ 156 (467)
|+|||+|+... ...+ ...++++|+.|+.+++++|++. +++|+||+||.++++.......+.+|+.+.+ ..|
T Consensus 76 d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p 155 (322)
T 2p4h_X 76 VGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKP 155 (322)
T ss_dssp SEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred CEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCc
Confidence 99999998432 2223 3458999999999999999998 7999999999986533322223566765321 123
Q ss_pred CC-hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHH---hcCCCceEEecCCCccccccchhHHHH
Q 012270 157 QD-LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL---AKPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 157 ~~-~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~---~~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
.. .|+.+|..+|++++++++.+|++++++||+++|||.....++..+.. ...|....+ ++ ...+|+|++|+|+
T Consensus 156 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~i~v~Dva~ 232 (322)
T 2p4h_X 156 FGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI-GV--TRFHMVHVDDVAR 232 (322)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGC-CE--EEEEEEEHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccC-cC--CCcCEEEHHHHHH
Confidence 33 69999999999999987667999999999999999765322222211 123433222 22 2348999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
+++.+++ .+...| .|| ++++++|+.|+++.+.+..+.. .+|... ..+ ..+.
T Consensus 233 a~~~~~~-----~~~~~g-~~~-~~~~~~s~~e~~~~i~~~~~~~----~~~~~~-------------~~~----~~~~- 283 (322)
T 2p4h_X 233 AHIYLLE-----NSVPGG-RYN-CSPFIVPIEEMSQLLSAKYPEY----QILTVD-------------ELK----EIKG- 283 (322)
T ss_dssp HHHHHHH-----SCCCCE-EEE-CCCEEEEHHHHHHHHHHHCTTS----CCCCTT-------------TTT----TCCC-
T ss_pred HHHHHhh-----CcCCCC-CEE-EcCCCCCHHHHHHHHHHhCCCC----CCCCCc-------------ccc----CCCC-
Confidence 9999987 334445 588 5668899999999999887421 222110 000 0010
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
.....+|++|+ ++|||+|+++++|+++++++|+++.
T Consensus 284 --------~~~~~~d~~k~-~~lG~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 284 --------ARLPDLNTKKL-VDAGFDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp --------EECCEECCHHH-HHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred --------CcceecccHHH-HHhCCccCCCHHHHHHHHHHHHHhc
Confidence 02467899999 5599999999999999999999864
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=318.25 Aligned_cols=306 Identities=20% Similarity=0.218 Sum_probs=217.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC-CCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|+||||||+||||++|+++|+++| ++|++++|+....... .. +..... ..+++++.+|++|++++.++++++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~-~~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 78 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNVKKV-KH---LLDLPKAETHLTLWKADLADEGSFDEAIKGC 78 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCTTCHHHH-HH---HHTSTTHHHHEEEEECCTTSTTTTHHHHTTC
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEECCcchhHHH-HH---HHhcccCCCeEEEEEcCCCCHHHHHHHHcCC
Confidence 57899999999999999999999999 5999988865410000 00 000000 125788999999999999999999
Q ss_pred CEEEEcccCCC-CCCCh-hhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCC-------C
Q 012270 86 STVFYVDATDL-NTDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCW-------K 155 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~-~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~-------~ 155 (467)
|+|||+|+... ...++ ...+++|+.|+.+++++|++.+ ++|+||+||.++|+.......+.+|+.+.+. .
T Consensus 79 d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 158 (337)
T 2c29_D 79 TGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKM 158 (337)
T ss_dssp SEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred CEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCC
Confidence 99999998543 22333 3588999999999999999987 8999999999855333222335677653221 1
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHh---cCCCceEEecCCCccccccchhHHHH
Q 012270 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLA---KPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 156 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~---~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
+.+.|+.+|..+|++++.+++.+|++++++||+++|||+....++..+... ..|... ..+.+ ....|+|++|+|+
T Consensus 159 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~i~v~Dva~ 236 (337)
T 2c29_D 159 TAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEA-HYSII-RQGQFVHLDDLCN 236 (337)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGG-GHHHH-TEEEEEEHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCc-ccccc-CCCCEEEHHHHHH
Confidence 445799999999999998876579999999999999998654222222211 223321 12221 1245999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
+++.+++ .+.. ++.|++++ ..+|+.|+++.+.+.++.. .+|... . ..+
T Consensus 237 a~~~~~~-----~~~~-~~~~~~~~-~~~s~~e~~~~i~~~~~~~----~~~~~~---------------~----~~~-- 284 (337)
T 2c29_D 237 AHIYLFE-----NPKA-EGRYICSS-HDCIILDLAKMLREKYPEY----NIPTEF---------------K----GVD-- 284 (337)
T ss_dssp HHHHHHH-----CTTC-CEEEEECC-EEEEHHHHHHHHHHHCTTS----CCCSCC---------------T----TCC--
T ss_pred HHHHHhc-----Cccc-CceEEEeC-CCCCHHHHHHHHHHHCCCc----cCCCCC---------------C----ccc--
Confidence 9999987 3333 44786655 5689999999999987431 122110 0 000
Q ss_pred hHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 313 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
. ......+|++|+ ++|||+|+++++|+++++++|+++..
T Consensus 285 -~-----~~~~~~~d~~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~ 323 (337)
T 2c29_D 285 -E-----NLKSVCFSSKKL-TDLGFEFKYSLEDMFTGAVDTCRAKG 323 (337)
T ss_dssp -T-----TCCCCEECCHHH-HHHTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred -C-----CCccccccHHHH-HHcCCCcCCCHHHHHHHHHHHHHHcC
Confidence 0 112467899999 67999999999999999999998764
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=326.12 Aligned_cols=305 Identities=22% Similarity=0.189 Sum_probs=212.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|+||||||+||||++|+++|+++| ++|+++.|+........ .+.......+++++.+|++|++++.++++++|
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D 82 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKVS----HLLELQELGDLKIFRADLTDELSFEAPIAGCD 82 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEESCTTCTTTTH----HHHHHGGGSCEEEEECCTTTSSSSHHHHTTCS
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCcchhhhHH----HHHhcCCCCcEEEEecCCCChHHHHHHHcCCC
Confidence 46899999999999999999999999 59999888654110000 00000012468899999999999999999999
Q ss_pred EEEEcccCCC-CCCCh-hhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccc-cccCCCC-CCCCCCCcccCC------C
Q 012270 87 TVFYVDATDL-NTDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADV-VFDGSHD-IHNGDETLTCCW------K 155 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~-~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~v-yg~~~~~-~~~~~E~~p~~~------~ 155 (467)
+|||+|+... ...++ ...+++|+.|+.+++++|++.+ ++|+||+||.++ |+..... ..+.+|+.+.+. .
T Consensus 83 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (338)
T 2rh8_A 83 FVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAK 162 (338)
T ss_dssp EEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------
T ss_pred EEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccC
Confidence 9999998543 22333 3488999999999999999986 999999999884 4322111 136777754221 1
Q ss_pred CC-ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHH---HhcCCCceEEecCC------Ccccccc
Q 012270 156 FQ-DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN---LAKPGWTKFIIGSG------ENMSDFT 225 (467)
Q Consensus 156 ~~-~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~---~~~~g~~~~~~g~g------~~~~~~i 225 (467)
|. +.|+.+|..+|++++.+++++|++++++||+++|||+....++..+. ....|... ..+.. ...++|+
T Consensus 163 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~i 241 (338)
T 2rh8_A 163 PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEF-LINGMKGMQMLSGSVSIA 241 (338)
T ss_dssp CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSSEEEE
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcc-ccccccccccccCcccEE
Confidence 22 26999999999999988766799999999999999986532222221 11334322 12211 1224899
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhccc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~ 305 (467)
|++|+|++++.+++ .+. .++.|++++ +.+|+.|+++.+.+.++.. .+|... +
T Consensus 242 ~v~Dva~a~~~~~~-----~~~-~~~~~~~~~-~~~s~~e~~~~l~~~~~~~----~~~~~~---------------~-- 293 (338)
T 2rh8_A 242 HVEDVCRAHIFVAE-----KES-ASGRYICCA-ANTSVPELAKFLSKRYPQY----KVPTDF---------------G-- 293 (338)
T ss_dssp EHHHHHHHHHHHHH-----CTT-CCEEEEECS-EEECHHHHHHHHHHHCTTS----CCCCCC---------------T--
T ss_pred EHHHHHHHHHHHHc-----CCC-cCCcEEEec-CCCCHHHHHHHHHHhCCCC----CCCCCC---------------C--
Confidence 99999999999987 233 345788876 5699999999999987531 122110 0
Q ss_pred ccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 306 ~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
..+. .....+|++|+ ++|||+|+++++|+++++++|+++.
T Consensus 294 --~~~~---------~~~~~~d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 294 --DFPP---------KSKLIISSEKL-VKEGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp --TSCS---------SCSCCCCCHHH-HHHTCCCSCCHHHHHHHHHHHHHHT
T ss_pred --CCCc---------CcceeechHHH-HHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 0000 01256799999 5599999999999999999999865
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=318.81 Aligned_cols=304 Identities=15% Similarity=0.085 Sum_probs=232.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEE-EecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH-QVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~ 85 (467)
++|+||||||+||||++++++|+++| ++|++++|+.......... +.. ....+++++ .+|++|.+++.++++++
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKR---WDA-KYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HHH-HSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCcccHHHHHHH---hhc-cCCCceEEEEecCCcChHHHHHHHcCC
Confidence 56899999999999999999999999 5999999975411000000 000 012468888 79999999999999999
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHh-CCCCeEEEEcCccccccCCCC--CCCCCCCccc----------
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVYNSTADVVFDGSHD--IHNGDETLTC---------- 152 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~-~~v~r~v~~SS~~vyg~~~~~--~~~~~E~~p~---------- 152 (467)
|+|||+|+......++...+++|+.++.+++++|++ .+++|+||+||.++|+..... ..+.+|+++.
T Consensus 85 d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 164 (342)
T 1y1p_A 85 AGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTL 164 (342)
T ss_dssp SEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHS
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhccc
Confidence 999999996655567888999999999999999985 688999999999998643211 1456776521
Q ss_pred ----CCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCceEEecCCCcc
Q 012270 153 ----CWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 153 ----~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~-----~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..|.+.|+.+|..+|++++.++.++ +++++++||+.+|||.... .++.++..+..|.+..+.+++ +.
T Consensus 165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 243 (342)
T 1y1p_A 165 PESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALM-PP 243 (342)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTC-CS
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccC-Cc
Confidence 23456789999999999999887543 7899999999999997542 567788888888876666665 67
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHH
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~ 301 (467)
++|+|++|+|++++.+++ .+...|+.+ +++++++|+.|+++.+.+.+|.+. +|.
T Consensus 244 ~~~v~v~Dva~a~~~~~~-----~~~~~g~~~-~~~g~~~s~~e~~~~i~~~~~~~~----~~~---------------- 297 (342)
T 1y1p_A 244 QYYVSAVDIGLLHLGCLV-----LPQIERRRV-YGTAGTFDWNTVLATFRKLYPSKT----FPA---------------- 297 (342)
T ss_dssp EEEEEHHHHHHHHHHHHH-----CTTCCSCEE-EECCEEECHHHHHHHHHHHCTTSC----CCC----------------
T ss_pred CCEeEHHHHHHHHHHHHc-----CcccCCceE-EEeCCCCCHHHHHHHHHHHCCCcc----CCC----------------
Confidence 899999999999999987 344456555 455578999999999999998751 111
Q ss_pred hcccccCCCCchHHHHHHhccceEeehhhHhhhCCC---ccccChHHHHHHHHHHHH
Q 012270 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGY---SPVVSLEEGVSSTIQSFS 355 (467)
Q Consensus 302 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~---~p~~~l~e~i~~~i~~~~ 355 (467)
..+... .....+|++|+++.||| .+.++++|+++++++|++
T Consensus 298 ------~~~~~~-------~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 298 ------DFPDQG-------QDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp ------CCCCCC-------CCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred ------CCCccc-------cccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 001000 01256799999998887 455699999999999874
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=322.22 Aligned_cols=291 Identities=15% Similarity=0.134 Sum_probs=216.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
+|+|||||||||||++|+++|+++| ++|++++|+... ...+.+|+.|. +.++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~~-------------------~~~v~~d~~~~--~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEPK-------------------PGKRFWDPLNP--ASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSCC-------------------TTCEECCTTSC--CTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCC-------------------ccceeecccch--hHHhcCCCCE
Confidence 7899999999999999999999999 599999998751 12256787653 4567789999
Q ss_pred EEEcccCCC----CCCChhhHHHhhHHHHHHHHHH-HHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 88 VFYVDATDL----NTDDFYNCYMIIVQGAKNVVTA-CRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 88 Vih~aa~~~----~~~~~~~~~~~nv~g~~~ll~a-a~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
|||+|+... ...++..++++|+.++.+|+++ |++.++++|||+||+++||. +....+.+|+.+. +.+.|+.
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~-~~~~~~~~E~~~~---~~~~y~~ 280 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGH-DRGDEILTEESES---GDDFLAE 280 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCS-EEEEEEECTTSCC---CSSHHHH
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecC-CCCCCccCCCCCC---CcChHHH
Confidence 999999532 3455678999999999999999 66778999999999999962 2233467888753 7789999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhc
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~ 242 (467)
+|...|+++..+.. .|++++++||+.+|||+. ..++.+...+..|.. ..++++++.++|||++|+|++++.+++
T Consensus 281 ~~~~~E~~~~~~~~-~gi~~~ilRp~~v~Gp~~-~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~--- 354 (516)
T 3oh8_A 281 VCRDWEHATAPASD-AGKRVAFIRTGVALSGRG-GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIV--- 354 (516)
T ss_dssp HHHHHHHTTHHHHH-TTCEEEEEEECEEEBTTB-SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHh-CCCCEEEEEeeEEECCCC-ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHh---
Confidence 99999988765443 789999999999999985 567777777776664 467889999999999999999999998
Q ss_pred cccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhcc
Q 012270 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (467)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 322 (467)
.+. .+++||+++++++|+.|+++.+.+.+|.+. .+.+|.+..+.. .|. .. .......
T Consensus 355 --~~~-~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~~~----------~g~----~~-----~~~~~~~ 411 (516)
T 3oh8_A 355 --DAQ-ISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPKIL----------LGS----QG-----AEELALA 411 (516)
T ss_dssp --CTT-CCEEEEESCSCCEEHHHHHHHTTC------------------------------------CC-----GGGGGGC
T ss_pred --Ccc-cCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHHHH----------hCC----ch-----hHHHhhc
Confidence 333 445999999999999999999999999765 445665543210 110 00 0012234
Q ss_pred ceEeehhhHhhhCCCccccC-hHHHHHHHHHHH
Q 012270 323 TRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSF 354 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~~-l~e~i~~~i~~~ 354 (467)
+..++++|+++ +||+|+++ ++++++++++..
T Consensus 412 ~~~~~~~kl~~-lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 412 SQRTAPAALEN-LSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp EEEECCHHHHH-TTCCCSCSSHHHHHHHHHTCC
T ss_pred CCeechHHHHH-CCCCCCCCCHHHHHHHHhCcc
Confidence 56789999995 99999987 999999999864
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=291.21 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=213.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+|||||||||||++++++|+++ | ++|++++|++... ..+...+++++.+|++|++++.++++++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~-----------~~l~~~~~~~~~~D~~d~~~l~~~~~~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKA-----------STLADQGVEVRHGDYNQPESLQKAFAGVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTT-----------HHHHHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHHHH-----------hHHhhcCCeEEEeccCCHHHHHHHHhcCC
Confidence 57999999999999999999999 8 5999999976410 00112468899999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+|||+|+... . .++|+.++.+++++|++.+++|+||+||.++|. ....|+.+|..
T Consensus 69 ~vi~~a~~~~-----~--~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~------------------~~~~y~~~K~~ 123 (287)
T 2jl1_A 69 KLLFISGPHY-----D--NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEE------------------SIIPLAHVHLA 123 (287)
T ss_dssp EEEECCCCCS-----C--HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG------------------CCSTHHHHHHH
T ss_pred EEEEcCCCCc-----C--chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC------------------CCCchHHHHHH
Confidence 9999998531 1 167999999999999999999999999998761 11379999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~ 246 (467)
+|+++++ .|++++++||+.++|+....++... ...+.. ..+.++..++|+|++|+|++++.+++ .+
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~i~~~Dva~~~~~~~~-----~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVNEGLRAS---TESGAI--VTNAGSGIVNSVTRNELALAAATVLT-----EE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSSGGGHHH---HHHTEE--EESCTTCCBCCBCHHHHHHHHHHHHT-----SS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccchhhHHHH---hhCCce--eccCCCCccCccCHHHHHHHHHHHhc-----CC
Confidence 9999976 6899999999999887523333222 223432 34566788999999999999999997 34
Q ss_pred cCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH----HHH-Hhc
Q 012270 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY----IVQ-LAS 321 (467)
Q Consensus 247 ~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~-~~~ 321 (467)
...|++||+++++++|+.|+++.+.+.+|.+.+...+|.+.+..... .. ..|..... ... ...
T Consensus 190 ~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~ 257 (287)
T 2jl1_A 190 GHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLV-------NA-----GVPEPFTEITAAIYDAISK 257 (287)
T ss_dssp SCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHH-------HT-----TCCHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHH-------hC-----CCCHHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999987777888765432211 00 11100000 000 111
Q ss_pred cceEeehhhHhhhCCCccccChHHHHHHHHH
Q 012270 322 RTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (467)
Q Consensus 322 ~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~ 352 (467)
.....|++|+++.|| |.++++|+++++++
T Consensus 258 ~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 258 GEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp TTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred CCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 235578999999999 55799999999875
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=311.57 Aligned_cols=325 Identities=15% Similarity=0.066 Sum_probs=232.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC-------cCCCCCeEEEEecCCCHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-------SLSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~Dl~d~~~l 78 (467)
..+|+|||||||||||++++++|+++| ++|++++|++.......+....+.. .....+++++.+|++|++++
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 145 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 145 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence 457899999999999999999999999 6999999976511000000000000 01135799999999998888
Q ss_pred HHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccccc---CCCCCCCCCCCccc-CC
Q 012270 79 KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD---GSHDIHNGDETLTC-CW 154 (467)
Q Consensus 79 ~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~---~~~~~~~~~E~~p~-~~ 154 (467)
. ++.++|+|||+|+......++...+++|+.++.+++++|++ ++++|||+||.++ |. ......+++|+++. +.
T Consensus 146 ~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~~~ 222 (427)
T 4f6c_A 146 V-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ 222 (427)
T ss_dssp C-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCSSC
T ss_pred C-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccccccCC
Confidence 8 67789999999997666677889999999999999999999 8899999999999 43 22334567887753 24
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCCceEEecCCCcccccc
Q 012270 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~---------~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
.+.+.|+.+|+.+|++++.+++ .|++++++||+.||||..... +..++..+..+..+.. ++++..++|+
T Consensus 223 ~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v 300 (427)
T 4f6c_A 223 LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFS 300 (427)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HHHTCEECCE
T ss_pred CCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-ccccceEEEe
Confidence 5789999999999999999875 789999999999999986542 6677777776665443 4467889999
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhccc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~ 305 (467)
|++|+|++++.++. .+. .|++||+++++++++.|+++.+.+ +| .+.+..+.|....... +
T Consensus 301 ~v~DvA~ai~~~~~-----~~~-~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~---------~-- 360 (427)
T 4f6c_A 301 FVDTTARQIVALAQ-----VNT-PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQ---------D-- 360 (427)
T ss_dssp EHHHHHHHHHHHTT-----SCC-CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHT---------T--
T ss_pred eHHHHHHHHHHHHc-----CCC-CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhc---------C--
Confidence 99999999999987 344 788999999999999999999998 66 3333344433222110 0
Q ss_pred ccCCCCchHHH-HHHhccceEeehhhHh---hhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 306 TYNHSLSACYI-VQLASRTRTFDCIAAQ---KHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 306 ~~~~p~~~~~~-~~~~~~~~~~d~~k~~---~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.+.+.... -........+|+++.. +.+||.+....++.++++++++++...
T Consensus 361 ---~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~ 415 (427)
T 4f6c_A 361 ---MYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 415 (427)
T ss_dssp ---CHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred ---chhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00000000 0112235677888776 557998875556699999999988753
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=317.04 Aligned_cols=325 Identities=15% Similarity=0.069 Sum_probs=234.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCC-------CcCCCCCeEEEEecCCCHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-------DSLSSGRAEYHQVDVRDISQIK 79 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~Dl~d~~~l~ 79 (467)
.+|+|||||||||||++|+++|+++| ++|++++|+........+....+. ......+++++.+|+.|++.+.
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCeEEEECCccchHHHHHHHHHhcC-CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 46899999999999999999999999 699999997651100000000000 0012368999999999988777
Q ss_pred HHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccc--cccCCCCCCCCCCCccc-CCCC
Q 012270 80 KVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV--VFDGSHDIHNGDETLTC-CWKF 156 (467)
Q Consensus 80 ~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~v--yg~~~~~~~~~~E~~p~-~~~~ 156 (467)
+..++|+|||+|+......++...+++|+.++.+++++|++ +++++||+||.++ |........+.+|+++. +..+
T Consensus 228 -~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~vG~~~~~~~~~~~~~E~~~~~~~~~ 305 (508)
T 4f6l_B 228 -LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL 305 (508)
T ss_dssp -CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCTTSEECTTCSCCEECTTCSCSSBCC
T ss_pred -CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhhccCCccCCcCcccccccccccccC
Confidence 67789999999997666677888999999999999999999 7899999999999 32222344567787753 2457
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCCceEEecCCCccccccch
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~---------~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
.+.|+.+|..+|++++++++ .|++++++||+.|||+..... +..++.....++.+.. ++++..++|+|+
T Consensus 306 ~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~~v~v 383 (508)
T 4f6l_B 306 TSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFSFV 383 (508)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEECEEH
T ss_pred CCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccCceEEEEcH
Confidence 88999999999999999875 799999999999999976543 6677777777775433 456789999999
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhccccc
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 307 (467)
+|+|++++.++. .+. .+++||+++++++++.|+++.+.+.. .+.+..|.|....... +
T Consensus 384 ~DvA~ai~~~~~-----~~~-~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l~~~------------~- 441 (508)
T 4f6l_B 384 DTTARQIVALAQ-----VNT-PQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEILQKQ------------D- 441 (508)
T ss_dssp HHHHHHHHHHTT-----BCC-SCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHHHTT------------C-
T ss_pred HHHHHHHHHHHh-----CCC-CCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHHHhc------------C-
Confidence 999999999987 344 78899999999999999999999865 3334444443221110 0
Q ss_pred CCCCchHHHH-HHhccceEeehhhHh---hhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 308 NHSLSACYIV-QLASRTRTFDCIAAQ---KHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 308 ~~p~~~~~~~-~~~~~~~~~d~~k~~---~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.+.+..... ........+|+++.. +.+||.+....++.++++++|+++...
T Consensus 442 -~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~ 496 (508)
T 4f6l_B 442 -MYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 496 (508)
T ss_dssp -CHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -CccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 000000000 012234667887766 447998876668899999999998753
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=286.03 Aligned_cols=266 Identities=16% Similarity=0.095 Sum_probs=212.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
|+|+||||+||||++++++|++ | ++|++++|++. .. ++ +.+|++|++++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g-~~V~~~~r~~~-----------~~-----~~---~~~Dl~~~~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R-HEVIKVYNSSE-----------IQ-----GG---YKLDLTDFPRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T-SCEEEEESSSC-----------CT-----TC---EECCTTSHHHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-C-CeEEEecCCCc-----------CC-----CC---ceeccCCHHHHHHHHHhcCCC
Confidence 5799999999999999999995 8 59999999764 11 12 78999999999999986 99
Q ss_pred EEEEcccCCCC---CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~~---~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|+.... ..+++..+++|+.++.+++++|++.++ |+||+||.++|+... .+.+|+. +..|.+.|+.+
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~---~~~~e~~--~~~~~~~Y~~s 133 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEK---GNYKEED--IPNPINYYGLS 133 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSS---CSBCTTS--CCCCSSHHHHH
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCC---CCcCCCC--CCCCCCHHHHH
Confidence 99999995442 356788999999999999999999887 999999999996432 2677877 45678899999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|++++. ++++++||+.+|| ...+...+...+..+.++.+.++ .++++|++|+|++++.+++.
T Consensus 134 K~~~e~~~~~------~~~~~iR~~~v~G--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~--- 199 (273)
T 2ggs_A 134 KLLGETFALQ------DDSLIIRTSGIFR--NKGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLEL--- 199 (273)
T ss_dssp HHHHHHHHCC------TTCEEEEECCCBS--SSSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhC------CCeEEEecccccc--ccHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhc---
Confidence 9999999876 5689999999998 34556666666777777666654 78999999999999999983
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (467)
+ . +++||+++ +.+|+.|+++.+.+.+|.+.+... |.+.. ..... ....
T Consensus 200 --~-~-~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~-~~~~~-------------------~~~~~-------~~~~ 247 (273)
T 2ggs_A 200 --R-K-TGIIHVAG-ERISRFELALKIKEKFNLPGEVKE-VDEVR-------------------GWIAK-------RPYD 247 (273)
T ss_dssp --T-C-CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEE-ESSCT-------------------TCCSC-------CCSB
T ss_pred --C-c-CCeEEECC-CcccHHHHHHHHHHHhCCChhhcc-ccccc-------------------ccccC-------CCcc
Confidence 2 2 45999999 999999999999999998765321 11100 00000 0124
Q ss_pred eEeehhhHhhhCCCcc-ccChHHHH
Q 012270 324 RTFDCIAAQKHIGYSP-VVSLEEGV 347 (467)
Q Consensus 324 ~~~d~~k~~~~lG~~p-~~~l~e~i 347 (467)
..+|++|++++|||+| ++++++++
T Consensus 248 ~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 248 SSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp CCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred cccCHHHHHHHhCCCCCCccccccc
Confidence 5689999999999999 57998875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=310.63 Aligned_cols=283 Identities=18% Similarity=0.136 Sum_probs=211.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhc---CCcEEEEEcCCCCccCCCCcCCCCCCC----------cCCCCCeEEEEecC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLEL---GKCIVRVTDSTQSLQLDPSESNSLLPD----------SLSSGRAEYHQVDV 72 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~---g~~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~Dl 72 (467)
..+|+|||||||||||++|+++|+++ | ++|++++|+........+....+.. .....+++++.+|+
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 46789999999999999999999999 8 5999999976521000000000000 00125899999999
Q ss_pred C------CHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 73 R------DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 73 ~------d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
+ |.+++.++++++|+|||+|+.... .++...+++|+.++.+++++|++.+++||||+||.++|+.. ...+.
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~--~~~~~ 226 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAI--EPSAF 226 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTS--CTTTC
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCcc--CCCCc
Confidence 8 777899999999999999996655 67778899999999999999999999999999999999643 23466
Q ss_pred CCCcccCC---------CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-------CCcHHHHHHHhcC-C
Q 012270 147 DETLTCCW---------KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-------TQLVPLLVNLAKP-G 209 (467)
Q Consensus 147 ~E~~p~~~---------~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~-------~~~~~~~~~~~~~-g 209 (467)
+|+.+..+ ...+.|+.+|..+|+++++++++.|++++++||++|||+.. ..++..++..... |
T Consensus 227 ~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g 306 (478)
T 4dqv_A 227 TEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATG 306 (478)
T ss_dssp CSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHC
T ss_pred CCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcC
Confidence 77663211 11245999999999999999876799999999999999854 1245555544333 3
Q ss_pred Cc-eEEec---C---CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC--cCHHHHHHHHHHHcCCCCCC
Q 012270 210 WT-KFIIG---S---GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP--IKFWDFLSIILEGLGYQRPF 280 (467)
Q Consensus 210 ~~-~~~~g---~---g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~--~s~~el~~~i~~~~g~~~~~ 280 (467)
.. ..+.+ + ++..++|+||+|+|++++.++...... +...+++||++++++ +|+.|+++.+.+. |.+.+.
T Consensus 307 ~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~-~~~~~~~ynv~~~~~~~~s~~el~~~l~~~-g~~~~~ 384 (478)
T 4dqv_A 307 IAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGS-SLAGFATYHVMNPHDDGIGLDEYVDWLIEA-GYPIRR 384 (478)
T ss_dssp EEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-C-CCCSEEEEEESCCCCSSCSHHHHHHHHHHT-TCSCEE
T ss_pred cccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccC-CCCCCceEEecCCCCCCcCHHHHHHHHHHc-CCCccc
Confidence 31 11121 1 267889999999999999998732111 345678999999987 9999999999995 777655
Q ss_pred c-cCChHHHHHHHHH
Q 012270 281 I-KLPTGVVWYIILL 294 (467)
Q Consensus 281 ~-~ip~~~~~~~~~~ 294 (467)
+ .+|.|+.+....+
T Consensus 385 i~~~~~w~~~l~~~~ 399 (478)
T 4dqv_A 385 IDDFAEWLQRFEASL 399 (478)
T ss_dssp ESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 5 6777876665544
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=288.58 Aligned_cols=279 Identities=14% Similarity=0.101 Sum_probs=206.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
+|+|||||||||++++++|+++ | ++|++++|++... ......+++++.+|++|++++.++++++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKA-----------QALAAQGITVRQADYGDEAALTSALQGVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTC-----------HHHHHTTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEEcChHhh-----------hhhhcCCCeEEEcCCCCHHHHHHHHhCCCE
Confidence 4899999999999999999998 8 5999999976411 001124688999999999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~ 167 (467)
|||+|+... +.|+.++.+++++|++.+++|+||+||.++| . ....|+.+|..+
T Consensus 69 vi~~a~~~~---------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~--~----------------~~~~y~~sK~~~ 121 (286)
T 2zcu_A 69 LLLISSSEV---------GQRAPQHRNVINAAKAAGVKFIAYTSLLHAD--T----------------SPLGLADEHIET 121 (286)
T ss_dssp EEECC-----------------CHHHHHHHHHHHHTCCEEEEEEETTTT--T----------------CCSTTHHHHHHH
T ss_pred EEEeCCCCc---------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC--C----------------CcchhHHHHHHH
Confidence 999998421 2478899999999999999999999999876 1 114799999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccccc
Q 012270 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~ 247 (467)
|+++++ .|++++++||+.++|+.. ..+. .....+ .+ ..+++++.++|+|++|+|++++.+++ .+.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-~~~~---~~~~~~-~~-~~~~~~~~~~~i~~~Dva~~~~~~~~-----~~~ 186 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-ASAP---AALEHG-VF-IGAAGDGKIASATRADYAAAAARVIS-----EAG 186 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-TTHH---HHHHHT-EE-EESCTTCCBCCBCHHHHHHHHHHHHH-----SSS
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-HHhH---HhhcCC-ce-eccCCCCccccccHHHHHHHHHHHhc-----CCC
Confidence 999986 589999999987766532 1222 222233 33 35667888999999999999999998 344
Q ss_pred CCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCch----HHHHHHh-cc
Q 012270 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA----CYIVQLA-SR 322 (467)
Q Consensus 248 ~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~-~~ 322 (467)
..|++||+++++.+|+.|+++.+.+.+|.+.+...+|.+.+..... .. ..|... ......+ ..
T Consensus 187 ~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~ 254 (286)
T 2zcu_A 187 HEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALK----------SV--GLPDGLADMLADSDVGASKG 254 (286)
T ss_dssp CTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHT----------TS--SCCHHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHH----------Hc--CCCHHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999999999987777888765432210 00 011000 0001111 12
Q ss_pred ceEeehhhHhhhCCCccccChHHHHHHHHHHHH
Q 012270 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (467)
Q Consensus 323 ~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~ 355 (467)
....|++|+++.|||.| ++++|+++++++|+.
T Consensus 255 ~~~~~~~~~~~~lg~~~-~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 255 GLFDDSKTLSKLIGHPT-TTLAESVSHLFNVNN 286 (286)
T ss_dssp TTCCCCCHHHHHHTSCC-CCHHHHHHGGGC---
T ss_pred CCccCchHHHHHhCcCC-CCHHHHHHHHHhhcC
Confidence 34568899999999855 699999999998873
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=272.15 Aligned_cols=225 Identities=17% Similarity=0.147 Sum_probs=177.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+||+|+|||||||||++++++|+++| ++|++++|++... .. ...+++++.+|++|++++.++++++|
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~----------~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d 69 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKI----------KI--ENEHLKVKKADVSSLDEVCEVCKGAD 69 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGC----------CC--CCTTEEEECCCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccc----------hh--ccCceEEEEecCCCHHHHHHHhcCCC
Confidence 46899999999999999999999999 5999999987521 11 12679999999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+|||+|+..... ...+++|+.++.+++++|++.+++|+||+||.++|+..+. ...|+. +..|.+.|+.+|..
T Consensus 70 ~vi~~a~~~~~~---~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~---~~~~~~--~~~p~~~Y~~sK~~ 141 (227)
T 3dhn_A 70 AVISAFNPGWNN---PDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPG---LRLMDS--GEVPENILPGVKAL 141 (227)
T ss_dssp EEEECCCC---------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETT---EEGGGT--TCSCGGGHHHHHHH
T ss_pred EEEEeCcCCCCC---hhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCC---CccccC--CcchHHHHHHHHHH
Confidence 999999854322 2378899999999999999999999999999998854322 123333 44678899999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~ 246 (467)
+|++++.++++.|++++++||+.+|||+.... ....+....+. .++. ++|+|++|+|++++.+++ .+
T Consensus 142 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~------~~~~~~~~~~~-~~~~-~~~i~~~Dva~ai~~~l~-----~~ 208 (227)
T 3dhn_A 142 GEFYLNFLMKEKEIDWVFFSPAADMRPGVRTG------RYRLGKDDMIV-DIVG-NSHISVEDYAAAMIDELE-----HP 208 (227)
T ss_dssp HHHHHHTGGGCCSSEEEEEECCSEEESCCCCC------CCEEESSBCCC-CTTS-CCEEEHHHHHHHHHHHHH-----SC
T ss_pred HHHHHHHHhhccCccEEEEeCCcccCCCcccc------ceeecCCCccc-CCCC-CcEEeHHHHHHHHHHHHh-----Cc
Confidence 99999999877899999999999999986421 01112222222 1222 899999999999999999 57
Q ss_pred cCCCcEEEEcCCCCcCHHH
Q 012270 247 SVAGMAFFITNLEPIKFWD 265 (467)
Q Consensus 247 ~~~g~~yni~~~~~~s~~e 265 (467)
...|+.|+++++++.++.+
T Consensus 209 ~~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 209 KHHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp CCCSEEEEEECCSCCC---
T ss_pred cccCcEEEEEeehhcccCC
Confidence 7889999999999988753
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=280.06 Aligned_cols=235 Identities=19% Similarity=0.222 Sum_probs=195.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+|+|||||||||||++++++|+++ |+++|++++|++..... +.......+++++.+|++|.+++.++++++
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~-------~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 92 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSE-------MAMEFNDPRMRFFIGDVRDLERLNYALEGV 92 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHH-------HHHHHCCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHH-------HHHHhcCCCEEEEECCCCCHHHHHHHHhcC
Confidence 4589999999999999999999999 94499999997642110 011112357999999999999999999999
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
|+|||+||... ...++...+++|+.|+.+++++|++.+++|+||+||..++ .|.+.|+.
T Consensus 93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~------------------~p~~~Y~~ 154 (344)
T 2gn4_A 93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA------------------NPINLYGA 154 (344)
T ss_dssp SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS------------------SCCSHHHH
T ss_pred CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC------------------CCccHHHH
Confidence 99999999543 2356778999999999999999999999999999998664 34679999
Q ss_pred HHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC-ceEEecCCCccccccchhHHHHHHHHHH
Q 012270 163 LKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAHAHVCAA 238 (467)
Q Consensus 163 sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~-~~~~~g~g~~~~~~i~v~Dva~a~~~al 238 (467)
+|+.+|++++.++.. .|++++++||+++||++. ..++.+...+..|+ ++.+. +++..++|+|++|+|++++.++
T Consensus 155 sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~~l 232 (344)
T 2gn4_A 155 TKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-SVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLKSL 232 (344)
T ss_dssp HHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-SHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-CHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHHHH
Confidence 999999999998753 579999999999999975 46788888888887 65554 7788899999999999999999
Q ss_pred HHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcC
Q 012270 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (467)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g 275 (467)
+. ...|++|+++++ ++|+.|+++.+.+.++
T Consensus 233 ~~------~~~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 233 KR------MHGGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HH------CCSSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred hh------ccCCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 83 245789998876 6999999999986543
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=267.83 Aligned_cols=237 Identities=16% Similarity=0.117 Sum_probs=194.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
||+||||||+||||++++++|+++| ++|++++|++... . ..+++++.+|++|++++.++++++|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---------~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGA---------A-----EAHEEIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCC---------C-----CTTEEECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCccc---------c-----CCCccEEEccCCCHHHHHHHHcCCCE
Confidence 5789999999999999999999999 5999999976411 0 13678899999999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~ 167 (467)
|||+|+.. ...++...+++|+.++.+++++|++.+++|+||+||.++|+... ...+.+|++ +..|.+.|+.+|..+
T Consensus 67 vi~~a~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~-~~~~~~E~~--~~~~~~~Y~~sK~~~ 142 (267)
T 3ay3_A 67 IIHLGGVS-VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYP-RTTRIDTEV--PRRPDSLYGLSKCFG 142 (267)
T ss_dssp EEECCSCC-SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSB-TTSCBCTTS--CCCCCSHHHHHHHHH
T ss_pred EEECCcCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCC-CCCCCCCCC--CCCCCChHHHHHHHH
Confidence 99999965 34567889999999999999999999999999999999996432 234678887 457788999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccccc
Q 012270 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~ 247 (467)
|++++.++.+.|++++++||+.+|+... +++..++|+|++|+|++++.+++ .+.
T Consensus 143 e~~~~~~~~~~gi~~~~lrp~~v~~~~~---------------------~~~~~~~~~~~~dva~~~~~~~~-----~~~ 196 (267)
T 3ay3_A 143 EDLASLYYHKFDIETLNIRIGSCFPKPK---------------------DARMMATWLSVDDFMRLMKRAFV-----APK 196 (267)
T ss_dssp HHHHHHHHHTTCCCEEEEEECBCSSSCC---------------------SHHHHHHBCCHHHHHHHHHHHHH-----SSC
T ss_pred HHHHHHHHHHcCCCEEEEeceeecCCCC---------------------CCCeeeccccHHHHHHHHHHHHh-----CCC
Confidence 9999988777899999999999984311 22346789999999999999998 344
Q ss_pred CCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEee
Q 012270 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327 (467)
Q Consensus 248 ~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d 327 (467)
..+++||+.++... ...|
T Consensus 197 ~~~~~~~~~~~~~~--------------------------------------------------------------~~~d 214 (267)
T 3ay3_A 197 LGCTVVYGASANTE--------------------------------------------------------------SWWD 214 (267)
T ss_dssp CCEEEEEECCSCSS--------------------------------------------------------------CCBC
T ss_pred CCceeEecCCCccc--------------------------------------------------------------cccC
Confidence 33568887653210 1246
Q ss_pred hhhHhhhCCCccccChHHHHHHHHH
Q 012270 328 CIAAQKHIGYSPVVSLEEGVSSTIQ 352 (467)
Q Consensus 328 ~~k~~~~lG~~p~~~l~e~i~~~i~ 352 (467)
..++ +.+||+|+++++++++++.+
T Consensus 215 ~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 215 NDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp CGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred HHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 7777 77999999999999988754
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=274.82 Aligned_cols=243 Identities=11% Similarity=0.047 Sum_probs=192.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
.+|+|||||||||||++++++|+++| ++|++++|+++....... ....+...+++++.+|+.|.+++.++++ +
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~----~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~ 83 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAK----IFKALEDKGAIIVYGLINEQEAMEKILKEHE 83 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHH----HHHHHHHTTCEEEECCTTCHHHHHHHHHHTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHH----HHHHHHhCCcEEEEeecCCHHHHHHHHhhCC
Confidence 35799999999999999999999999 599999997731100000 0001123589999999999999999999 9
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|+|||+++. .|+.++.+++++|++.| ++|||+ | +||. +.+|+. +..|.+.|+.+
T Consensus 84 ~d~Vi~~a~~------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~------~~~e~~--~~~p~~~y~~s 139 (346)
T 3i6i_A 84 IDIVVSTVGG------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGH------DVNRAD--PVEPGLNMYRE 139 (346)
T ss_dssp CCEEEECCCG------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSS------CTTTCC--CCTTHHHHHHH
T ss_pred CCEEEECCch------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCC------CCCccC--cCCCcchHHHH
Confidence 9999999984 38889999999999999 999986 3 4532 245554 44677899999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|+++++ .|++++++||+.++|........... ....++.+.++|+++..++|+|++|+|++++.+++
T Consensus 140 K~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~~~~~-~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~---- 210 (346)
T 3i6i_A 140 KRRVRQLVEE----SGIPFTYICCNSIASWPYYNNIHPSE-VLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVD---- 210 (346)
T ss_dssp HHHHHHHHHH----TTCCBEEEECCEESSCCCSCC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHH----cCCCEEEEEecccccccCcccccccc-ccCCCceEEEccCCCceEEecCHHHHHHHHHHHHh----
Confidence 9999999987 68999999999999986544332221 23355567899999999999999999999999998
Q ss_pred ccccCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHHH
Q 012270 244 RMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (467)
Q Consensus 244 ~~~~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~~ 288 (467)
.+...++.||++++ +.+|+.|+++.+.+.+|.+.+...+|...+
T Consensus 211 -~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~ 255 (346)
T 3i6i_A 211 -DVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDL 255 (346)
T ss_dssp -CGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHH
T ss_pred -CccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHH
Confidence 45556889999864 899999999999999999988777877643
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=283.31 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=186.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|||||||||||++|+++|+++|+.+|+++||. .|++++.++++++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~------------------------------~d~~~l~~~~~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ------------------------------TKEEELESALLKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT------------------------------CCHHHHHHHHHHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC------------------------------CCHHHHHHHhccCCEE
Confidence 6899999999999999999999994267665542 6889999999999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~ 167 (467)
||+|+.... .++...+++|+.++.+++++|++.+++ |+||+||.++|+ .+.|+.+|..+
T Consensus 51 ih~a~~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-------------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-------------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT-TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-------------------CSHHHHHHHHH
T ss_pred EECCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-------------------CCCchHHHHHH
Confidence 999995543 456778899999999999999999987 999999999983 47899999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 168 EALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|++++.++++.|++++++||+++|||+.. .+++.++..+..+.++.+ ++++..++++|++|+|++++.+++.
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~--- 186 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEG--- 186 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHhC---
Confidence 99999998878999999999999999764 477888888888887654 5788999999999999999999983
Q ss_pred ccccCC-CcEEEEcCCCCcCHHHHHHHHHHHcCCCC
Q 012270 244 RMVSVA-GMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (467)
Q Consensus 244 ~~~~~~-g~~yni~~~~~~s~~el~~~i~~~~g~~~ 278 (467)
+... +++||+++++.+|+.|+++.+.+.+|.+.
T Consensus 187 --~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~ 220 (369)
T 3st7_A 187 --TPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRL 220 (369)
T ss_dssp --CCCEETTEECCSCCEEEEHHHHHHHHHHHHHHHH
T ss_pred --CcccCCceEEeCCCCceeHHHHHHHHHHHhCCCc
Confidence 3332 78999999999999999999999988753
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=263.02 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=199.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
|+|||||||||||++++++|+++ | ++|++++|++... ......+++++.+|++|++++.++++++|+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-~~V~~~~R~~~~~-----------~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~ 68 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-DHFHIGVRNVEKV-----------PDDWRGKVSVRQLDYFNQESMVEAFKGMDT 68 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-TTEEEEESSGGGS-----------CGGGBTTBEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-CcEEEEECCHHHH-----------HHhhhCCCEEEEcCCCCHHHHHHHHhCCCE
Confidence 57999999999999999999998 8 5999999987521 112345899999999999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~ 167 (467)
|||+|+.... ...|+.++.+++++|++.|++|+||+||... .++.|+ .+...+..+
T Consensus 69 vi~~a~~~~~-------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~-----------~~~~~~------~~~~~~~~~ 124 (289)
T 3e48_A 69 VVFIPSIIHP-------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD-----------QHNNPF------HMSPYFGYA 124 (289)
T ss_dssp EEECCCCCCS-------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC-----------STTCCS------TTHHHHHHH
T ss_pred EEEeCCCCcc-------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC-----------CCCCCC------ccchhHHHH
Confidence 9999985432 1458999999999999999999999999432 111111 122334456
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccccc
Q 012270 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~ 247 (467)
|+.+++ .|++++++||+.+||+. ...+......+. ...+.++..++|+|++|+|++++.++. .+.
T Consensus 125 e~~~~~----~g~~~~ilrp~~~~~~~----~~~~~~~~~~~~--~~~~~g~~~~~~i~~~Dva~~~~~~l~-----~~~ 189 (289)
T 3e48_A 125 SRLLST----SGIDYTYVRMAMYMDPL----KPYLPELMNMHK--LIYPAGDGRINYITRNDIARGVIAIIK-----NPD 189 (289)
T ss_dssp HHHHHH----HCCEEEEEEECEESTTH----HHHHHHHHHHTE--ECCCCTTCEEEEECHHHHHHHHHHHHH-----CGG
T ss_pred HHHHHH----cCCCEEEEecccccccc----HHHHHHHHHCCC--EecCCCCceeeeEEHHHHHHHHHHHHc-----CCC
Confidence 666665 68999999999999973 222222222332 345667888999999999999999998 344
Q ss_pred CCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEee
Q 012270 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327 (467)
Q Consensus 248 ~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d 327 (467)
..|++||++ ++.+|+.|+++.+.+.+|.+.....+|...... ....+.+.. ..+..............+
T Consensus 190 ~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~p~~~~-~~~~~~~~~~~~g~~~~~ 258 (289)
T 3e48_A 190 TWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAE---------MYDEPKGFG-ALLASMYHAGARGLLDQE 258 (289)
T ss_dssp GTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHH---------HTCCSTTHH-HHHHHHHHHHHTTTTCCC
T ss_pred cCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHH---------HhcCCccHH-HHHHHHHHHHHCCCcccc
Confidence 458899999 999999999999999999987777777643211 111000000 000000001112233356
Q ss_pred hhhHhhhCCCccccChHHHHHH
Q 012270 328 CIAAQKHIGYSPVVSLEEGVSS 349 (467)
Q Consensus 328 ~~k~~~~lG~~p~~~l~e~i~~ 349 (467)
.+.+++.+|.+|+ +++|.+++
T Consensus 259 ~~~~~~~~G~~p~-~~~~~~~~ 279 (289)
T 3e48_A 259 SNDFKQLVNDQPQ-TLQSFLQE 279 (289)
T ss_dssp CSHHHHHHSSCCC-CHHHHHHC
T ss_pred CchHHHHhCCCCC-CHHHHHHH
Confidence 6778888999996 99886554
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=258.98 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=191.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+||+|+||||+|+||++++++|+++| ++|++++|++... ...+++++.+|++|.+++.++++++|
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r~~~~~--------------~~~~~~~~~~Dl~d~~~~~~~~~~~D 66 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDP--------------AGPNEECVQCDLADANAVNAMVAGCD 66 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEESSCCCC--------------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCccc--------------cCCCCEEEEcCCCCHHHHHHHHcCCC
Confidence 46789999999999999999999999 5999999976511 13578999999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+|||+||.. ...+++..+++|+.|+.+++++|++.+++|+||+||.++||... ...+.+|+. +..|.+.|+.+|..
T Consensus 67 ~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~-~~~~~~e~~--~~~~~~~Y~~sK~~ 142 (267)
T 3rft_A 67 GIVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYP-QTERLGPDV--PARPDGLYGVSKCF 142 (267)
T ss_dssp EEEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSB-TTSCBCTTS--CCCCCSHHHHHHHH
T ss_pred EEEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCC-CCCCCCCCC--CCCCCChHHHHHHH
Confidence 999999973 45678899999999999999999999999999999999996433 334677777 55778899999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~ 246 (467)
+|.+++.+++++|++++++||+.+||+. ++++...+|++++|+++++..+++ .+
T Consensus 143 ~e~~~~~~a~~~g~~~~~vr~~~v~~~~---------------------~~~~~~~~~~~~~d~a~~~~~~~~-----~~ 196 (267)
T 3rft_A 143 GENLARMYFDKFGQETALVRIGSCTPEP---------------------NNYRMLSTWFSHDDFVSLIEAVFR-----AP 196 (267)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECBCSSSC---------------------CSTTHHHHBCCHHHHHHHHHHHHH-----CS
T ss_pred HHHHHHHHHHHhCCeEEEEEeecccCCC---------------------CCCCceeeEEcHHHHHHHHHHHHh-----CC
Confidence 9999999887789999999999999872 344566789999999999999998 45
Q ss_pred cCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCC
Q 012270 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP 279 (467)
Q Consensus 247 ~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~ 279 (467)
...+.++++.++++.+++++... +.+|++++
T Consensus 197 ~~~~~~~~~~s~~~~~~~~~~~~--~~~g~~p~ 227 (267)
T 3rft_A 197 VLGCPVVWGASANDAGWWDNSHL--GFLGWKPK 227 (267)
T ss_dssp CCCSCEEEECCCCTTCCBCCGGG--GGGCCCCC
T ss_pred CCCceEEEEeCCCCCCcccChhH--HHCCCCCC
Confidence 55556899999888888776443 57777543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-32 Score=250.33 Aligned_cols=208 Identities=16% Similarity=0.107 Sum_probs=173.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC-HHHHHHHHhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~D~ 87 (467)
|+|+||||+||||++++++|+++| ++|++++|++... .. .++++++.+|++| ++++.++++++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~----------~~---~~~~~~~~~D~~d~~~~~~~~~~~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQV----------PQ---YNNVKAVHFDVDWTPEEMAKQLHGMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGS----------CC---CTTEEEEECCTTSCHHHHHTTTTTCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccch----------hh---cCCceEEEecccCCHHHHHHHHcCCCE
Confidence 589999999999999999999999 5999999987511 11 1679999999999 9999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~ 167 (467)
|||+|+... ...+++|+.++.+++++|++.+++|+||+||.++++.. +.+| . +..|.+.|+.+|..+
T Consensus 67 vi~~ag~~~-----~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~-----~~~e-~--~~~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 67 IINVSGSGG-----KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE-----KWIG-A--GFDALKDYYIAKHFA 133 (219)
T ss_dssp EEECCCCTT-----SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG-----GCCS-H--HHHHTHHHHHHHHHH
T ss_pred EEECCcCCC-----CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC-----cccc-c--ccccccHHHHHHHHH
Confidence 999999554 23678999999999999999999999999998777422 3344 2 456788999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccccc
Q 012270 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~ 247 (467)
|+++++ ..|++++++||+.+||+.....+ .. ++..+++++++|+|++++.+++ .+.
T Consensus 134 e~~~~~---~~~i~~~ilrp~~v~g~~~~~~~--------------~~--~~~~~~~i~~~Dva~~i~~~l~-----~~~ 189 (219)
T 3dqp_A 134 DLYLTK---ETNLDYTIIQPGALTEEEATGLI--------------DI--NDEVSASNTIGDVADTIKELVM-----TDH 189 (219)
T ss_dssp HHHHHH---SCCCEEEEEEECSEECSCCCSEE--------------EE--SSSCCCCEEHHHHHHHHHHHHT-----CGG
T ss_pred HHHHHh---ccCCcEEEEeCceEecCCCCCcc--------------cc--CCCcCCcccHHHHHHHHHHHHh-----Ccc
Confidence 999962 37899999999999998654311 12 2567899999999999999998 455
Q ss_pred CCCcEEEEcCCCCcCHHHHHH
Q 012270 248 VAGMAFFITNLEPIKFWDFLS 268 (467)
Q Consensus 248 ~~g~~yni~~~~~~s~~el~~ 268 (467)
..|++||++++ +.++.|+.+
T Consensus 190 ~~g~~~~i~~g-~~~~~e~~~ 209 (219)
T 3dqp_A 190 SIGKVISMHNG-KTAIKEALE 209 (219)
T ss_dssp GTTEEEEEEEC-SEEHHHHHH
T ss_pred ccCcEEEeCCC-CccHHHHHH
Confidence 66899999886 489888765
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=256.89 Aligned_cols=243 Identities=18% Similarity=0.121 Sum_probs=187.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|+|+||||||+||++++++|+++|.++|++++|++.... ...+...+++++.+|+.|++++.++++++|
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~---------~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d 74 (299)
T 2wm3_A 4 DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA---------AKELRLQGAEVVQGDQDDQVIMELALNGAY 74 (299)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHH---------HHHHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHH---------HHHHHHCCCEEEEecCCCHHHHHHHHhcCC
Confidence 35899999999999999999999998239999999765110 001112478999999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+|||+++.... ...+.|+.++.+++++|++.|++|+||+||..+|+.. ++ .+...|+.+|..
T Consensus 75 ~vi~~a~~~~~-----~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~--------~~-----~~~~~y~~sK~~ 136 (299)
T 2wm3_A 75 ATFIVTNYWES-----CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLT--------AG-----RLAAAHFDGKGE 136 (299)
T ss_dssp EEEECCCHHHH-----TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHT--------TT-----SCCCHHHHHHHH
T ss_pred EEEEeCCCCcc-----ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccC--------CC-----cccCchhhHHHH
Confidence 99999973211 1245788899999999999999999999998887421 11 235789999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc-eEEecCCCccccccchhHHHHHHHHHHHHhcccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~-~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~ 245 (467)
+|+++++ .|++++++||+.+||+....+.+ .....|+. ....+.++..++|+|++|+|++++.+++. .
T Consensus 137 ~e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~----~ 205 (299)
T 2wm3_A 137 VEEYFRD----IGVPMTSVRLPCYFENLLSHFLP---QKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKM----P 205 (299)
T ss_dssp HHHHHHH----HTCCEEEEECCEEGGGGGTTTCC---EECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHS----H
T ss_pred HHHHHHH----CCCCEEEEeecHHhhhchhhcCC---cccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcC----h
Confidence 9999987 57999999999999975332111 01223432 12233467789999999999999999872 1
Q ss_pred ccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHH
Q 012270 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (467)
Q Consensus 246 ~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~ 288 (467)
+...|++|++++ +.+|+.|+++.+.+.+|.+.+...+|.+.+
T Consensus 206 ~~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~ 247 (299)
T 2wm3_A 206 EKYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDY 247 (299)
T ss_dssp HHHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHH
T ss_pred hhhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHH
Confidence 124678999987 679999999999999999877777887654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=248.43 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=175.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCe-EEEEecCCCHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~ 84 (467)
.++|+|+||||||+||++++++|+++| ++|++++|++... +.....++ +++.+|++ +++.+++++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~-----------~~~~~~~~~~~~~~Dl~--~~~~~~~~~ 84 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEEQG-----------PELRERGASDIVVANLE--EDFSHAFAS 84 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGGGH-----------HHHHHTTCSEEEECCTT--SCCGGGGTT
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChHHH-----------HHHHhCCCceEEEcccH--HHHHHHHcC
Confidence 457899999999999999999999999 5999999987521 11112368 99999999 778888999
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
+|+|||+|+... ..++...+++|+.++.+++++|++.+++|+||+||...+. .+.. + .+.+.|+.+|
T Consensus 85 ~D~vi~~ag~~~-~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~---------~~~~--~-~~~~~Y~~sK 151 (236)
T 3e8x_A 85 IDAVVFAAGSGP-HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVD---------PDQG--P-MNMRHYLVAK 151 (236)
T ss_dssp CSEEEECCCCCT-TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSC---------GGGS--C-GGGHHHHHHH
T ss_pred CCEEEECCCCCC-CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCC---------CCCC--h-hhhhhHHHHH
Confidence 999999999553 3578889999999999999999999999999999954431 1111 1 4667999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccc
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~ 244 (467)
..+|++++. .|++++++||+.+||+.... ......++...++++|++|+|++++.+++
T Consensus 152 ~~~e~~~~~----~gi~~~~lrpg~v~~~~~~~-------------~~~~~~~~~~~~~~i~~~Dva~~~~~~~~----- 209 (236)
T 3e8x_A 152 RLADDELKR----SSLDYTIVRPGPLSNEESTG-------------KVTVSPHFSEITRSITRHDVAKVIAELVD----- 209 (236)
T ss_dssp HHHHHHHHH----SSSEEEEEEECSEECSCCCS-------------EEEEESSCSCCCCCEEHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHH----CCCCEEEEeCCcccCCCCCC-------------eEEeccCCCcccCcEeHHHHHHHHHHHhc-----
Confidence 999999984 78999999999999986432 12334455667899999999999999998
Q ss_pred cccCCCcEEEEcCCCCcCHHHHHHHHH
Q 012270 245 MVSVAGMAFFITNLEPIKFWDFLSIIL 271 (467)
Q Consensus 245 ~~~~~g~~yni~~~~~~s~~el~~~i~ 271 (467)
.+...|++||++++ +.++.|+++.+.
T Consensus 210 ~~~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 QQHTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp CGGGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred CccccCCeEEEeCC-CcCHHHHHHHhc
Confidence 45578899999987 699999998764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=264.81 Aligned_cols=237 Identities=16% Similarity=0.124 Sum_probs=182.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEec-CCCHHHHHHHHhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD-VRDISQIKKVLEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D-l~d~~~l~~~~~~~D 86 (467)
+|+|+|||||||||++++++|+++| ++|++++|++.... .......++++.+.+| ++|++++.++++++|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~--------~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d 75 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLI--------AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAH 75 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHH--------HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCChhh--------HHHHhhcCCcEEEECCccCCHHHHHHHHhcCC
Confidence 6789999999999999999999999 59999999765110 0000112478999999 999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCcc--ccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTAD--VVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~--vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+++... .+.|..+ ++++++|++.+ ++||||+||.+ .|+ ..+...|+.+
T Consensus 76 ~Vi~~a~~~~--------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~----------------~~~~~~y~~s 130 (352)
T 1xgk_A 76 LAFINTTSQA--------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG----------------PWPAVPMWAP 130 (352)
T ss_dssp EEEECCCSTT--------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS----------------SCCCCTTTHH
T ss_pred EEEEcCCCCC--------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC----------------CCCCccHHHH
Confidence 9999987431 1346776 99999999999 99999999985 331 1234679999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHH--hcCCCce-EEecCCCccccccch-hHHHHHHHHHHH
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL--AKPGWTK-FIIGSGENMSDFTYV-ENVAHAHVCAAE 239 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~--~~~g~~~-~~~g~g~~~~~~i~v-~Dva~a~~~al~ 239 (467)
|..+|++++. .|++++++||+ +||++.......++.. ...|... .+++++++.++++|+ +|+|++++.+++
T Consensus 131 K~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~ 205 (352)
T 1xgk_A 131 KFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 205 (352)
T ss_dssp HHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCEEEEecc-eecCCchhcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHh
Confidence 9999999987 48999999986 6898754321111111 1234432 346778889999999 899999999997
Q ss_pred Hhccccc-cCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHH
Q 012270 240 ALDSRMV-SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (467)
Q Consensus 240 ~~~~~~~-~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~ 288 (467)
. .+ ...|++||+++ +.+|+.|+++.+.+.+|.+.+...+|.+.+
T Consensus 206 ~----~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~~ 250 (352)
T 1xgk_A 206 D----GPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEI 250 (352)
T ss_dssp H----CHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCCC
T ss_pred C----CchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHHH
Confidence 3 11 23678999996 679999999999999999877777775543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=241.74 Aligned_cols=220 Identities=13% Similarity=0.008 Sum_probs=164.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|||||||||||++++++|+++| ++|++++|++... .....++++++.+|++|+++ ++++++|+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~-----------~~~~~~~~~~~~~D~~d~~~--~~~~~~d~v 66 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAVVRDPQKA-----------ADRLGATVATLVKEPLVLTE--ADLDSVDAV 66 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHH-----------HHHTCTTSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEeccccc-----------ccccCCCceEEecccccccH--hhcccCCEE
Confidence 689999999999999999999999 5999999987521 11123579999999999887 788999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCC-CCCCCCCcccCCCCCChHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHD-IHNGDETLTCCWKFQDLMCDLKAQA 167 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~-~~~~~E~~p~~~~~~~~Y~~sK~~~ 167 (467)
||+|+..... ...+.|+.++.+++++|++.+ +|+|++||.++++..... ....+|.. .+.|.+.|+.+|..+
T Consensus 67 i~~ag~~~~~----~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~sK~~~ 139 (224)
T 3h2s_A 67 VDALSVPWGS----GRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPE--SAASQPWYDGALYQY 139 (224)
T ss_dssp EECCCCCTTS----SCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCG--GGGGSTTHHHHHHHH
T ss_pred EECCccCCCc----chhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCC--CCccchhhHHHHHHH
Confidence 9999965221 124789999999999999999 999999998766433221 12333333 445688999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccccc
Q 012270 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (467)
Q Consensus 168 E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~ 247 (467)
|. ++.+.+..|++++++||+.+||++.... + ......+. .++...+++|++|+|++++.+++ .+.
T Consensus 140 e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~~---~---~~~~~~~~---~~~~~~~~i~~~DvA~~~~~~l~-----~~~ 204 (224)
T 3h2s_A 140 YE-YQFLQMNANVNWIGISPSEAFPSGPATS---Y---VAGKDTLL---VGEDGQSHITTGNMALAILDQLE-----HPT 204 (224)
T ss_dssp HH-HHHHTTCTTSCEEEEEECSBCCCCCCCC---E---EEESSBCC---CCTTSCCBCCHHHHHHHHHHHHH-----SCC
T ss_pred HH-HHHHHhcCCCcEEEEcCccccCCCcccC---c---eecccccc---cCCCCCceEeHHHHHHHHHHHhc-----Ccc
Confidence 95 4555556899999999999999954321 0 11111111 13445799999999999999998 577
Q ss_pred CCCcEEEEcCCCCcCHH
Q 012270 248 VAGMAFFITNLEPIKFW 264 (467)
Q Consensus 248 ~~g~~yni~~~~~~s~~ 264 (467)
..|++|++++.++.++.
T Consensus 205 ~~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 205 AIRDRIVVRDADLEHHH 221 (224)
T ss_dssp CTTSEEEEEECC-----
T ss_pred ccCCEEEEecCcchhcc
Confidence 78999999998665543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=240.36 Aligned_cols=219 Identities=14% Similarity=0.057 Sum_probs=147.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|+|||||||||++++++|+++| ++|++++|++.. ... .. ++++++.+|++|+++ +++.++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~----------~~~-~~-~~~~~~~~D~~d~~~--~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNAGK----------ITQ-TH-KDINILQKDIFDLTL--SDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCSHH----------HHH-HC-SSSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCchh----------hhh-cc-CCCeEEeccccChhh--hhhcCCCEE
Confidence 689999999999999999999999 599999998651 111 11 578999999999887 788999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
||+|+.... ..+.|+.++.+++++|++.+++|+|++||..+|+.... ..+..|+. +..|.+.|+.+|..+|
T Consensus 66 i~~ag~~~~------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~-~~~~~~~~--~~~~~~~y~~~k~~~e 136 (221)
T 3ew7_A 66 VDAYGISPD------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDED-GNTLLESK--GLREAPYYPTARAQAK 136 (221)
T ss_dssp EECCCSSTT------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC----------------------CCCSCCHHHHHH
T ss_pred EECCcCCcc------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCC-CccccccC--CCCCHHHHHHHHHHHH
Confidence 999996422 24679999999999999999999999999987743322 22345554 4456788999999999
Q ss_pred HHHHhhcC-CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccccc
Q 012270 169 ALVLFANN-IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (467)
Q Consensus 169 ~~v~~~~~-~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~ 247 (467)
.+. .+.. ..|++++++||+.+|||+... ..+ ...+..+...+++ .++++++|+|++++.+++ .+.
T Consensus 137 ~~~-~~~~~~~gi~~~ivrp~~v~g~~~~~--~~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~-----~~~ 202 (221)
T 3ew7_A 137 QLE-HLKSHQAEFSWTYISPSAMFEPGERT--GDY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIE-----RPN 202 (221)
T ss_dssp HHH-HHHTTTTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHH-----SCS
T ss_pred HHH-HHHhhccCccEEEEeCcceecCCCcc--Cce---EeccccceecCCC---CceEeHHHHHHHHHHHHh-----Ccc
Confidence 873 3332 579999999999999994321 111 1123333344443 379999999999999999 577
Q ss_pred CCCcEEEEcCCCCcCHHH
Q 012270 248 VAGMAFFITNLEPIKFWD 265 (467)
Q Consensus 248 ~~g~~yni~~~~~~s~~e 265 (467)
..|+.||++++.+.+..|
T Consensus 203 ~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 203 HLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp CTTSEEECCC--------
T ss_pred ccCCEEEECCCCcccccc
Confidence 789999999997776554
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=244.87 Aligned_cols=229 Identities=14% Similarity=0.067 Sum_probs=175.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
++|+|+||||+|+||++++++|+++ | ++|++++|++... .. . ..+++++.+|++|++++.+++++
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~~~~~----------~~-~-~~~~~~~~~D~~d~~~~~~~~~~ 69 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQGK----------EK-I-GGEADVFIGDITDADSINPAFQG 69 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESCHHHH----------HH-T-TCCTTEEECCTTSHHHHHHHHTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcCCCch----------hh-c-CCCeeEEEecCCCHHHHHHHHcC
Confidence 5789999999999999999999999 7 5999999976411 00 1 24678999999999999999999
Q ss_pred CCEEEEcccCCCC---------C-------CChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 85 ASTVFYVDATDLN---------T-------DDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 85 ~D~Vih~aa~~~~---------~-------~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+|+|||+|+.... . .+....+++|+.++.+++++|++.+++|+||+||.+++. +
T Consensus 70 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~----------~ 139 (253)
T 1xq6_A 70 IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN----------P 139 (253)
T ss_dssp CSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC----------T
T ss_pred CCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCC----------C
Confidence 9999999984321 1 112346799999999999999999999999999997751 2
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
..|........|+.+|..+|++++. .|++++++||+.+||+..... ....+....+++ ...+++|++
T Consensus 140 ~~~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~ 206 (253)
T 1xq6_A 140 DHPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR------ELLVGKDDELLQ---TDTKTVPRA 206 (253)
T ss_dssp TCGGGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS------CEEEESTTGGGG---SSCCEEEHH
T ss_pred CCccccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh------hhhccCCcCCcC---CCCcEEcHH
Confidence 2211111224689999999999876 689999999999999975320 000000001112 135799999
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCCC---CcCHHHHHHHHHHHcCC
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLE---PIKFWDFLSIILEGLGY 276 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~~---~~s~~el~~~i~~~~g~ 276 (467)
|+|++++.+++ .+...|++||+++++ ++|+.|+++.+.+.+|+
T Consensus 207 Dva~~~~~~~~-----~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 207 DVAEVCIQALL-----FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp HHHHHHHHHTT-----CGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHc-----CccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 99999999987 344568899999974 59999999999998875
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=250.87 Aligned_cols=236 Identities=14% Similarity=0.148 Sum_probs=182.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+++|+||||||+||++++++|+++| ++|++++|+++.. ... + ..+...+++++.+|+.|++++.++++++|
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~---~~~---~-~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d 81 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSK---TTL---L-DEFQSLGAIIVKGELDEHEKLVELMKKVD 81 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSC---HHH---H-HHHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCch---hhH---H-HHhhcCCCEEEEecCCCHHHHHHHHcCCC
Confidence 34589999999999999999999999 5999999976410 000 0 00113578999999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCC-CChHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDLK 164 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~~~Y~~sK 164 (467)
+|||+++.. ++.++.+++++|++.| ++|||+ | +||.. .+|.. +..| ...| .+|
T Consensus 82 ~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~sK 136 (318)
T 2r6j_A 82 VVISALAFP------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVE------EDRIN--ALPPFEALI-ERK 136 (318)
T ss_dssp EEEECCCGG------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSC------TTTCC--CCHHHHHHH-HHH
T ss_pred EEEECCchh------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccC------ccccc--CCCCcchhH-HHH
Confidence 999999842 1556789999999998 999985 3 35421 12322 2233 3468 999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccc
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~ 244 (467)
..+|+++++ .|++++++||+.++++ +++.+......++.+.++++++..++|+|++|+|++++.+++
T Consensus 137 ~~~e~~~~~----~~~~~~~lr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~----- 203 (318)
T 2r6j_A 137 RMIRRAIEE----ANIPYTYVSANCFASY----FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVAT----- 203 (318)
T ss_dssp HHHHHHHHH----TTCCBEEEECCEEHHH----HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHh----cCCCeEEEEcceehhh----hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhc-----
Confidence 999999986 6899999999887764 344444444455667788888999999999999999999987
Q ss_pred cccCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHHH
Q 012270 245 MVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (467)
Q Consensus 245 ~~~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~~ 288 (467)
.+...++.|++.++ +.+|+.|+++.+.+.+|.+.+...+|...+
T Consensus 204 ~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~ 248 (318)
T 2r6j_A 204 DPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEEI 248 (318)
T ss_dssp CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHHH
T ss_pred CccccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecCHHHH
Confidence 34445788888865 789999999999999999887778887643
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=246.89 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=182.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC-CccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ-SLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+||+|+||||||+||++++++|+++| ++|++++|++ +.. ..... ..+. .....+++++.+|++|++++.++++++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~-~~~~~-~~l~-~~~~~~v~~v~~D~~d~~~l~~a~~~~ 78 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDS-TPSSV-QLRE-EFRSMGVTIIEGEMEEHEKMVSVLKQV 78 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTC-CHHHH-HHHH-HHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCccccc-ChHHH-HHHH-HhhcCCcEEEEecCCCHHHHHHHHcCC
Confidence 57889999999999999999999999 5999999976 210 00000 0000 011357899999999999999999999
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCC-CChHHHH
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDL 163 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~~~Y~~s 163 (467)
|+|||+++... +.++.+++++|++.| ++|||+ | +||... +|.. +..| .+.| .+
T Consensus 79 d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~------~~~~--~~~p~~~~y-~s 133 (321)
T 3c1o_A 79 DIVISALPFPM------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCEE------DRIK--PLPPFESVL-EK 133 (321)
T ss_dssp SEEEECCCGGG------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSCG------GGCC--CCHHHHHHH-HH
T ss_pred CEEEECCCccc------------hhhHHHHHHHHHHhCCccEEec-c---ccccCc------cccc--cCCCcchHH-HH
Confidence 99999998431 556789999999998 999983 3 454211 2222 2233 4579 99
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHH---HhcCCCceEEecCCCccccccchhHHHHHHHHHHHH
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN---LAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~---~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~ 240 (467)
|..+|+++++ .|++++++||+.++|+. ++.+.. ....++.+.++++++..++|+|++|+|++++.+++
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~- 204 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAYF----VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVAC- 204 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHHH----HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHH----cCCCeEEEEeceecccc----ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHh-
Confidence 9999999986 57999999999988752 333332 12345556788888999999999999999999998
Q ss_pred hccccccCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHH
Q 012270 241 LDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (467)
Q Consensus 241 ~~~~~~~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~ 287 (467)
.+...|+.|+++++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 205 ----~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (321)
T 3c1o_A 205 ----DPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQ 248 (321)
T ss_dssp ----CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEECHHH
T ss_pred ----CccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCCHHH
Confidence 34556888999875 78999999999999999988877888654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=243.37 Aligned_cols=247 Identities=12% Similarity=0.065 Sum_probs=183.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
+|+|+|||||||||++++++|+++| ++|++++|+.+... +... ..+ ..+...+++++.+|++|++++.++++++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~-~~~~-~~~-~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSN-IDKV-QML-LYFKQLGAKLIEASLDDHQRLVDALKQVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSC-HHHH-HHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcccc-hhHH-HHH-HHHHhCCeEEEeCCCCCHHHHHHHHhCCCE
Confidence 6789999999999999999999999 59999999864110 0000 000 001235789999999999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCC-CChHHHHHH
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDLKA 165 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~~~Y~~sK~ 165 (467)
|||+++.... ..|+.++.+++++|++.| ++|||+ | +||..... . +. +..| ...| .+|.
T Consensus 80 vi~~a~~~~~--------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~---~--~~--~~~p~~~~y-~sK~ 139 (313)
T 1qyd_A 80 VISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDI---M--EH--ALQPGSITF-IDKR 139 (313)
T ss_dssp EEECCCCSSS--------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTS---C--CC--CCSSTTHHH-HHHH
T ss_pred EEECCccccc--------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCccc---c--cc--CCCCCcchH-HHHH
Confidence 9999985432 236788999999999998 999986 3 45422111 1 11 2233 4568 9999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccc
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~ 245 (467)
.+|+++++ .|++++++||+.++|+....+..........++.+.++++++..++++|++|+|++++.+++ .
T Consensus 140 ~~e~~~~~----~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~-----~ 210 (313)
T 1qyd_A 140 KVRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID-----D 210 (313)
T ss_dssp HHHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT-----C
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHh-----C
Confidence 99999986 68999999999998853221111000011344555677888899999999999999999987 3
Q ss_pred ccCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHH
Q 012270 246 VSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (467)
Q Consensus 246 ~~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~ 287 (467)
+...|+.|+++++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 211 ~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 253 (313)
T 1qyd_A 211 PQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQD 253 (313)
T ss_dssp GGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSHH
T ss_pred cccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECCHHH
Confidence 4455788998876 78999999999999999987777777543
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-30 Score=236.73 Aligned_cols=206 Identities=16% Similarity=0.059 Sum_probs=164.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|+|+||||+|+||++++++|+++|+ ++|++++|++.. ..++++++.+|+.|++++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------------~~~~~~~~~~D~~~~~~~~~~~--~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------EHPRLDNPVGPLAELLPQLDGS--I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------CCTTEECCBSCHHHHGGGCCSC--C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------------cCCCceEEeccccCHHHHHHhh--h
Confidence 568999999999999999999999994 299999997651 1247888999999998888777 9
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
|+|||+|+... ...+++..+++|+.++.+++++|++.+++|+||+||..+|+ .+.+.|+.+|
T Consensus 67 d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~-----------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred cEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCC-----------------CCccHHHHHH
Confidence 99999999543 23567889999999999999999999999999999998873 1346899999
Q ss_pred HHHHHHHHhhcCCCCce-EEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 165 AQAEALVLFANNIDGLL-TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~-~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
..+|++++. .|++ ++++||+.+|||..... +...+. +.... .++ ..++++|++|+|++++.+++
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~---~~~~~~-~~~~~-~~~--~~~~~i~~~Dva~~~~~~~~---- 194 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFR---LAEILA-APIAR-ILP--GKYHGIEACDLARALWRLAL---- 194 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEE---GGGGTT-CCCC-------CHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcch---HHHHHH-Hhhhh-ccC--CCcCcEeHHHHHHHHHHHHh----
Confidence 999999987 5799 99999999999976521 111222 11112 222 26799999999999999997
Q ss_pred ccccCCCcEEEEcCCCCcCHH
Q 012270 244 RMVSVAGMAFFITNLEPIKFW 264 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~ 264 (467)
.+. +++||+++++..++.
T Consensus 195 -~~~--~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 195 -EEG--KGVRFVESDELRKLG 212 (215)
T ss_dssp -CCC--SEEEEEEHHHHHHHH
T ss_pred -cCC--CCceEEcHHHHHHhh
Confidence 232 779999987655543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=217.40 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=157.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|+||||||+||++++++|+++| ++|++++|++.... .....+++++.+|+.|++++.++++++|+|
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v 71 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLP-----------SEGPRPAHVVVGDVLQAADVDKTVAGQDAV 71 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSC-----------SSSCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcc-----------cccCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 799999999999999999999999 59999999875210 111457899999999999999999999999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
||+|+.... .++ .++|+.++.+++++|++.+++|+||+||.++|+.... . +.+...|+.+|..+|
T Consensus 72 i~~a~~~~~-~~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~--------~---~~~~~~y~~~K~~~e 136 (206)
T 1hdo_A 72 IVLLGTRND-LSP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK--------V---PPRLQAVTDDHIRMH 136 (206)
T ss_dssp EECCCCTTC-CSC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC--------S---CGGGHHHHHHHHHHH
T ss_pred EECccCCCC-CCc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccc--------c---cccchhHHHHHHHHH
Confidence 999995433 122 2589999999999999999999999999999853211 1 115678999999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc-ccccchhHHHHHHHHHHHHhcccccc
Q 012270 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM-SDFTYVENVAHAHVCAAEALDSRMVS 247 (467)
Q Consensus 169 ~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~-~~~i~v~Dva~a~~~al~~~~~~~~~ 247 (467)
++++. .+++++++||+.+ |++... +......+ ... .+++|++|+|++++.+++ .+.
T Consensus 137 ~~~~~----~~i~~~~lrp~~~-~~~~~~-----------~~~~~~~~--~~~~~~~i~~~Dva~~~~~~~~-----~~~ 193 (206)
T 1hdo_A 137 KVLRE----SGLKYVAVMPPHI-GDQPLT-----------GAYTVTLD--GRGPSRVISKHDLGHFMLRCLT-----TDE 193 (206)
T ss_dssp HHHHH----TCSEEEEECCSEE-ECCCCC-----------SCCEEESS--SCSSCSEEEHHHHHHHHHHTTS-----CST
T ss_pred HHHHh----CCCCEEEEeCCcc-cCCCCC-----------cceEeccc--CCCCCCccCHHHHHHHHHHHhc-----Ccc
Confidence 99976 6899999999997 443211 00000111 111 589999999999999987 455
Q ss_pred CCCcEEEEcCCC
Q 012270 248 VAGMAFFITNLE 259 (467)
Q Consensus 248 ~~g~~yni~~~~ 259 (467)
..|++|++++++
T Consensus 194 ~~g~~~~i~~g~ 205 (206)
T 1hdo_A 194 YDGHSTYPSHQY 205 (206)
T ss_dssp TTTCEEEEECCC
T ss_pred ccccceeeeccc
Confidence 678999999874
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=236.89 Aligned_cols=243 Identities=15% Similarity=0.130 Sum_probs=181.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC-CcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+||+|+||||||+||++++++|+++| ++|++++|+++....+ .+. ..+. .+...+++++.+|+.|++++.++++++
T Consensus 1 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~-~~~~-~l~~~~v~~v~~D~~d~~~l~~~~~~~ 77 (307)
T 2gas_A 1 TENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKE-ELID-NYQSLGVILLEGDINDHETLVKAIKQV 77 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHH-HHHH-HHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHH-HHHH-HHHhCCCEEEEeCCCCHHHHHHHHhCC
Confidence 36789999999999999999999999 5999999986210000 000 0000 011257899999999999999999999
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCC-CChHHHH
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDL 163 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~~~Y~~s 163 (467)
|+|||+++... +.++.+++++|++.| ++|||+ | +||.. .+|.. +..| .+.| .+
T Consensus 78 d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~s 132 (307)
T 2gas_A 78 DIVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLD------VDRHD--AVEPVRQVF-EE 132 (307)
T ss_dssp SEEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC--CCTTHHHHH-HH
T ss_pred CEEEECCcccc------------cccHHHHHHHHHhcCCceEEee-c---ccccC------ccccc--CCCcchhHH-HH
Confidence 99999998532 456789999999998 999984 3 35421 12222 2233 4578 99
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|+++++ .|++++++||+.++|+....+... ......++.+.++++++..++++|++|+|++++.+++
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~---- 203 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYFLRNLAQL-DATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAAN---- 203 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTTGGGTTCT-TCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeecccccccccc-ccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHc----
Confidence 9999999986 579999999999988643221110 0012244456778888899999999999999999997
Q ss_pred ccccCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHH
Q 012270 244 RMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (467)
Q Consensus 244 ~~~~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~ 287 (467)
.+...|+.|++.++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 204 -~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (307)
T 2gas_A 204 -DPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQ 247 (307)
T ss_dssp -CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEECHHH
T ss_pred -CccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 34456788888875 68999999999999999987777777654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=240.26 Aligned_cols=242 Identities=14% Similarity=0.178 Sum_probs=181.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
||+|+|||||||||++++++|+++| ++|++++|+.+....+... ..+ ..+...+++++.+|++|++++.++++++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~-~~~-~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 80 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKA-QLL-ESFKASGANIVHGSIDDHASLVEAVKNVDV 80 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHH-HHH-HHHHTTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHH-HHH-HHHHhCCCEEEEeccCCHHHHHHHHcCCCE
Confidence 6789999999999999999999999 5999999976421000000 000 011235789999999999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCCCCCCCCCCCcccCCCC-CChHHHHHH
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDLKA 165 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~-~~~Y~~sK~ 165 (467)
|||+++.. ++.++.+++++|++.| ++|||+ | +||.. .+|.. +..| .+.| .+|.
T Consensus 81 vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~sK~ 135 (308)
T 1qyc_A 81 VISTVGSL------------QIESQVNIIKAIKEVGTVKRFFP-S---EFGND------VDNVH--AVEPAKSVF-EVKA 135 (308)
T ss_dssp EEECCCGG------------GSGGGHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC--CCTTHHHHH-HHHH
T ss_pred EEECCcch------------hhhhHHHHHHHHHhcCCCceEee-c---ccccC------ccccc--cCCcchhHH-HHHH
Confidence 99999842 1456789999999998 999984 4 35321 12322 2233 3578 9999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcccc
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~ 245 (467)
.+|+++++ .|++++++||+.++|+....+.... .....++.+.++++++..++|+|++|+|++++.+++ .
T Consensus 136 ~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~-----~ 205 (308)
T 1qyc_A 136 KVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQAG-LTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD-----D 205 (308)
T ss_dssp HHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCTT-CSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSS-----C
T ss_pred HHHHHHHh----cCCCeEEEEeceecccccccccccc-ccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHh-----C
Confidence 99999987 5789999999999886432211100 012245566788899999999999999999999886 3
Q ss_pred ccCCCcEEEEcCC-CCcCHHHHHHHHHHHcCCCCCCccCChHH
Q 012270 246 VSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (467)
Q Consensus 246 ~~~~g~~yni~~~-~~~s~~el~~~i~~~~g~~~~~~~ip~~~ 287 (467)
+...++.|++.++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 206 ~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (308)
T 1qyc_A 206 PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 248 (308)
T ss_dssp GGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHH
T ss_pred ccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCCHHH
Confidence 4456788999875 78999999999999999988777788643
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=224.08 Aligned_cols=207 Identities=14% Similarity=0.046 Sum_probs=159.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
++|+|+||||+|+||++++++|+++| + +|++++|++.... . ...+++.++.+|++|++++.+++++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G-~~~~V~~~~r~~~~~~----------~-~~~~~~~~~~~D~~d~~~~~~~~~~ 84 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFD----------E-EAYKNVNQEVVDFEKLDDYASAFQG 84 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCC----------S-GGGGGCEEEECCGGGGGGGGGGGSS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCC-CCCEEEEEEcCCCCcc----------c-cccCCceEEecCcCCHHHHHHHhcC
Confidence 35799999999999999999999999 6 8999999765210 0 1123688999999999999999999
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
+|+|||+|+......+++..+++|+.++.+++++|++.+++|+|++||.++|+. +...|+.+|
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-----------------~~~~Y~~sK 147 (242)
T 2bka_A 85 HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-----------------SNFLYLQVK 147 (242)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-----------------CSSHHHHHH
T ss_pred CCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC-----------------CcchHHHHH
Confidence 999999999654334467789999999999999999999999999999988731 246899999
Q ss_pred HHHHHHHHhhcCCCCc-eEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhc
Q 012270 165 AQAEALVLFANNIDGL-LTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~-~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~ 242 (467)
...|++++.+ ++ +++++||+.+|||..... ...+........+ ... ....+++++|+|++++.+++
T Consensus 148 ~~~e~~~~~~----~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~dva~~~~~~~~--- 215 (242)
T 2bka_A 148 GEVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLP-DSW----ASGHSVPVVTVVRAMLNNVV--- 215 (242)
T ss_dssp HHHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCC-TTG----GGGTEEEHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhc----CCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccC-ccc----cCCcccCHHHHHHHHHHHHh---
Confidence 9999999874 56 699999999999975432 2333333322221 111 12468999999999999997
Q ss_pred cccccCCCcEEEEcC
Q 012270 243 SRMVSVAGMAFFITN 257 (467)
Q Consensus 243 ~~~~~~~g~~yni~~ 257 (467)
+...++.|++.+
T Consensus 216 ---~~~~~~~~~~~~ 227 (242)
T 2bka_A 216 ---RPRDKQMELLEN 227 (242)
T ss_dssp ---SCCCSSEEEEEH
T ss_pred ---CccccCeeEeeH
Confidence 233344666654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=221.62 Aligned_cols=229 Identities=12% Similarity=-0.001 Sum_probs=166.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
||+|+||||+|+||++++++|+++| ++|++++|++.. ... .+.+|++|.+++.++++
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~r~~~~----------~~~--------~~~~D~~~~~~~~~~~~~~~~ 61 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG-HTVIGIDRGQAD----------IEA--------DLSTPGGRETAVAAVLDRCGG 61 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSS----------EEC--------CTTSHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCChhH----------ccc--------cccCCcccHHHHHHHHHHcCC
Confidence 4689999999999999999999999 599999997641 000 15689999999998886
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC-------CCCCccc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN-------GDETLTC 152 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~-------~~E~~p~ 152 (467)
++|+|||+|+......+++..+++|+.++.++++++.+. +.+|+|++||..+|+.... ..+ .+|+.+.
T Consensus 62 ~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-~~~~~~~~~~~~~~~~~ 140 (255)
T 2dkn_A 62 VLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA-ELPMVEAMLAGDEARAI 140 (255)
T ss_dssp CCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGG-GCHHHHHHHHTCHHHHH
T ss_pred CccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccccc-ccchhhhhcccchhhhh
Confidence 799999999966545678899999999999999987764 6689999999999853211 001 1111110
Q ss_pred -----CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 153 -----CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 153 -----~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++|+.... +......+....... + ...++
T Consensus 141 ~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~~ 214 (255)
T 2dkn_A 141 ELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQA----SKADPRYGESTRRFV-A-PLGRG 214 (255)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHH----HHHCTTTHHHHHSCC-C-TTSSC
T ss_pred hhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhh----cccchhhHHHHHHHH-H-HhcCC
Confidence 0135578999999999999988755 68999999999999874321 111111111100011 2 44689
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHH
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~e 265 (467)
++++|+|++++.+++.. .....|+.|+++++..++++|
T Consensus 215 ~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 215 SEPREVAEAIAFLLGPQ---ASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTHHHHHCT
T ss_pred CCHHHHHHHHHHHhCCC---cccceeeEEEecCCeEeeeec
Confidence 99999999999998621 113578999999987666543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=206.43 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=144.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+++||+||||||+|+||++++++|+++|.++|++++|++... ......+++.+.+|++|++++.+++++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~-----------~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 88 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI-----------HKPYPTNSQIIMGDVLNHAALKQAMQG 88 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS-----------CSSCCTTEEEEECCTTCHHHHHHHHTT
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh-----------cccccCCcEEEEecCCCHHHHHHHhcC
Confidence 346789999999999999999999999934999999987521 112235799999999999999999999
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
+|+|||+++... ....+.++++++++.+++|||++||..+|+.......+.++.. ...+...|
T Consensus 89 ~D~vv~~a~~~~-----------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~--~~~~~~~~---- 151 (236)
T 3qvo_A 89 QDIVYANLTGED-----------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAV--IGEPLKPF---- 151 (236)
T ss_dssp CSEEEEECCSTT-----------HHHHHHHHHHHHHHTTCCEEEEECCCCC------------------CGGGHHH----
T ss_pred CCEEEEcCCCCc-----------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhc--ccchHHHH----
Confidence 999999998421 1135779999999999999999999999964332222233332 22333444
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCc-cccccchhHHHHHHHHHHHHhcc
Q 012270 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
..+|+.++. .|++++++||+.++++..... .....+.. ...+++++|+|++++.++..
T Consensus 152 ~~~~~~l~~----~gi~~~~vrPg~i~~~~~~~~--------------~~~~~~~~~~~~~i~~~DvA~~i~~ll~~--- 210 (236)
T 3qvo_A 152 RRAADAIEA----SGLEYTILRPAWLTDEDIIDY--------------ELTSRNEPFKGTIVSRKSVAALITDIIDK--- 210 (236)
T ss_dssp HHHHHHHHT----SCSEEEEEEECEEECCSCCCC--------------EEECTTSCCSCSEEEHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHH----CCCCEEEEeCCcccCCCCcce--------------EEeccCCCCCCcEECHHHHHHHHHHHHcC---
Confidence 445666654 789999999999998754321 11111222 23689999999999999983
Q ss_pred ccccCCCcEEEEcCCCC
Q 012270 244 RMVSVAGMAFFITNLEP 260 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~ 260 (467)
.....|+.|++++++.
T Consensus 211 -~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 211 -PEKHIGENIGINQPGT 226 (236)
T ss_dssp -TTTTTTEEEEEECSSC
T ss_pred -cccccCeeEEecCCCC
Confidence 2225789999999753
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-25 Score=210.65 Aligned_cols=237 Identities=16% Similarity=0.126 Sum_probs=176.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|........ ........++.++.+|++|++++.++++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 87 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKV------CNNIGSPDVISFVHCDVTKDEDVRNLVDTTI 87 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHHHCCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhHHHHH------HHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 5999999875411000 0001112368999999999999988876
Q ss_pred ----CCCEEEEcccCCCC---------CCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~---------~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||.... .++++..+++|+.++.++++++... +.+++|++||..+|...
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 160 (278)
T 2bgk_A 88 AKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG------- 160 (278)
T ss_dssp HHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-------
T ss_pred HHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC-------
Confidence 69999999994321 1345678999999999999988764 56799999999887321
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEecCCCc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~---~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
..+...|+.+|+..|.+++.++.+ .|++++++||+.++|+..... .+.......... +..
T Consensus 161 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------~~~ 226 (278)
T 2bgk_A 161 -------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQA-------ANL 226 (278)
T ss_dssp -------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHT-------CSS
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcc-------ccc
Confidence 124568999999999999887643 589999999999999965432 122222221111 112
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHc
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL 274 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~ 274 (467)
...+++++|+|++++.++... .....|+.|++.++..+++.|+++.+.+++
T Consensus 227 ~~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 227 KGTLLRAEDVADAVAYLAGDE---SKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp CSCCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred ccccCCHHHHHHHHHHHcCcc---cccCCCCEEEECCcccccCCccchhhhhhc
Confidence 346899999999999988521 124568999999999999999999876543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=214.40 Aligned_cols=236 Identities=16% Similarity=0.056 Sum_probs=169.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+...... +.. ....++.++.+|++|++++.++++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~-~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG-DTVIGTARRTEALDD-------LVA-AYPDRAEAISLDVTDGERIDVVAADVL 74 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHH-------HHH-HCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHH-hccCCceEEEeeCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 599999997652110 000 113478999999999999888776
Q ss_pred ----CCCEEEEcccCC-------CCCCChhhHHHhhHHH----HHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~nv~g----~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||.. ...+++...+++|+.| ++.+++.+++.+..++|++||...+.
T Consensus 75 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 143 (281)
T 3m1a_A 75 ARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL----------- 143 (281)
T ss_dssp HHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------
T ss_pred HhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC-----------
Confidence 689999999932 2334567789999999 55555555667788999999987752
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-------cHHHHHHHhcCCCceEEecCC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-------~~~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..|.+++.++.+ +|++++++|||.+.++.... ..+.+.......... ...
T Consensus 144 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 216 (281)
T 3m1a_A 144 ----SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQL---VQG 216 (281)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHH---HHC
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHH---Hhh
Confidence 2245678999999999999888765 68999999999998874221 111111111111111 111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g 275 (467)
....++.+++|+|++++.+++ ....+..|+++++....+.+.+..+.+.++
T Consensus 217 ~~~~~~~~~~dva~a~~~~~~------~~~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 217 SDGSQPGDPAKAAAAIRLALD------TEKTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp -----CBCHHHHHHHHHHHHH------SSSCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHh------CCCCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 234578889999999999998 334567999999877777777777766543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-24 Score=195.16 Aligned_cols=202 Identities=13% Similarity=0.065 Sum_probs=150.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHH-hcCCcEEEEEcCCCC-ccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQS-LQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll-~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
||++|+||||+|+||++++++|+ ++| ++|++++|++. .. ... ....+++.+.+|++|++++.++++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g-~~V~~~~r~~~~~~----------~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 72 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTD-MHITLYGRQLKTRI----------PPEIIDHERVTVIEGSFQNPGXLEQAVT 72 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCC-CEEEEEESSHHHHS----------CHHHHTSTTEEEEECCTTCHHHHHHHHT
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCC-ceEEEEecCccccc----------hhhccCCCceEEEECCCCCHHHHHHHHc
Confidence 34569999999999999999999 899 59999999754 21 100 024578999999999999999999
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCC-hHHH
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD-LMCD 162 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~-~Y~~ 162 (467)
++|+|||+|+.. |+. ++++++++++.+++|+|++||..+|+..+.. ..+ + ...... .|+.
T Consensus 73 ~~d~vv~~ag~~------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~---~~~--~-~~~~~~~~y~~ 133 (221)
T 3r6d_A 73 NAEVVFVGAMES------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA---LEK--W-TFDNLPISYVQ 133 (221)
T ss_dssp TCSEEEESCCCC------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH---HHH--H-HHHTSCHHHHH
T ss_pred CCCEEEEcCCCC------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc---ccc--c-cccccccHHHH
Confidence 999999999843 444 8999999999999999999999988422110 000 0 001223 7999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCc-cccccchhHHHHHHHHHH--H
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHAHVCAA--E 239 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~-~~~~i~v~Dva~a~~~al--~ 239 (467)
+|..+|++++. .|++++++||+.++++.... .. .....+.. ...+++.+|+|++++.++ .
T Consensus 134 ~K~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~------------~~-~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~ 196 (221)
T 3r6d_A 134 GERQARNVLRE----SNLNYTILRLTWLYNDPEXT------------DY-ELIPEGAQFNDAQVSREAVVKAIFDILHAA 196 (221)
T ss_dssp HHHHHHHHHHH----SCSEEEEEEECEEECCTTCC------------CC-EEECTTSCCCCCEEEHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHh----CCCCEEEEechhhcCCCCCc------------ce-eeccCCccCCCceeeHHHHHHHHHHHHHhc
Confidence 99999999986 68999999999999883221 11 11111111 124899999999999999 6
Q ss_pred HhccccccCCCcEEEEcCCC
Q 012270 240 ALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 240 ~~~~~~~~~~g~~yni~~~~ 259 (467)
. .....++.+.++++.
T Consensus 197 ~----~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 197 D----ETPFHRTSIGVGEPG 212 (221)
T ss_dssp C----CGGGTTEEEEEECTT
T ss_pred C----hhhhhcceeeecCCC
Confidence 2 233567888888763
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=196.37 Aligned_cols=185 Identities=14% Similarity=0.035 Sum_probs=148.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC---
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 84 (467)
+|+++||||+|+||++++++|+ +| ++|++++|++. .+.+|++|++++.+++++
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g-~~V~~~~r~~~----------------------~~~~D~~~~~~~~~~~~~~~~ 58 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KK-AEVITAGRHSG----------------------DVTVDITNIDSIKKMYEQVGK 58 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TT-SEEEEEESSSS----------------------SEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CC-CeEEEEecCcc----------------------ceeeecCCHHHHHHHHHHhCC
Confidence 4689999999999999999999 99 59999998642 367999999999988875
Q ss_pred CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
+|+|||+|+... ..+++...+++|+.++.++++++.+. + +++|++||...+. +.
T Consensus 59 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~---------------~~ 122 (202)
T 3d7l_A 59 VDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMED---------------PI 122 (202)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTS---------------CC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcC---------------CC
Confidence 899999999432 11334577899999999999999876 4 6999999987652 22
Q ss_pred CCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHH
Q 012270 155 KFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~~--~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
.+...|+.+|...|.+++.++.+ .|++++++||+.++++... . +++...+++++++|+|+
T Consensus 123 ~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~---------~---------~~~~~~~~~~~~~dva~ 184 (202)
T 3d7l_A 123 VQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK---------L---------EPFFEGFLPVPAAKVAR 184 (202)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH---------H---------GGGSTTCCCBCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh---------h---------hhhccccCCCCHHHHHH
Confidence 34568999999999999998865 4899999999999987421 0 11223468999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFIT 256 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~ 256 (467)
+++.+++ ....|++||+.
T Consensus 185 ~~~~~~~------~~~~G~~~~vd 202 (202)
T 3d7l_A 185 AFEKSVF------GAQTGESYQVY 202 (202)
T ss_dssp HHHHHHH------SCCCSCEEEEC
T ss_pred HHHHhhh------ccccCceEecC
Confidence 9988875 45678889873
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=198.19 Aligned_cols=209 Identities=17% Similarity=0.076 Sum_probs=161.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+|+++||||+|+||++++++|+++| ++|++++|+.. ..++.++.+|++|++++.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~-----------------~~~~~~~~~D~~~~~~~~~~~~~~~~ 63 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRRE-----------------GEDLIYVEGDVTREEDVRRAVARAQE 63 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCC-----------------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEccCcc-----------------ccceEEEeCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999999 59999998753 1235889999999999998887
Q ss_pred --CCCEEEEcccCCCCC-------C----ChhhHHHhhHHHHHHHHHHHHhCC----------CCeEEEEcCccccccCC
Q 012270 84 --GASTVFYVDATDLNT-------D----DFYNCYMIIVQGAKNVVTACRECK----------VRRLVYNSTADVVFDGS 140 (467)
Q Consensus 84 --~~D~Vih~aa~~~~~-------~----~~~~~~~~nv~g~~~ll~aa~~~~----------v~r~v~~SS~~vyg~~~ 140 (467)
++|+|||+|+..... . +++..+++|+.++.++++++.... ..++|++||...+..
T Consensus 64 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-- 141 (242)
T 1uay_A 64 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG-- 141 (242)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC--
T ss_pred hCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC--
Confidence 789999999943211 1 567889999999999999987641 129999999988732
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
..+...|+.+|+..|.+++.++.+ .|++++++||+.++++........+......+.+.
T Consensus 142 -------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----- 203 (242)
T 1uay_A 142 -------------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF----- 203 (242)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS-----
T ss_pred -------------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCC-----
Confidence 134578999999999988776543 48999999999999885433333333333333221
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
...+++++|+|++++.++. .+...|+.|++.++..++
T Consensus 204 ---~~~~~~~~dva~~~~~l~~-----~~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 ---PPRLGRPEEYAALVLHILE-----NPMLNGEVVRLDGALRMA 240 (242)
T ss_dssp ---SCSCCCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCCC
T ss_pred ---cccCCCHHHHHHHHHHHhc-----CCCCCCcEEEEcCCeecC
Confidence 0357899999999999987 345678999999986543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=202.48 Aligned_cols=218 Identities=16% Similarity=0.093 Sum_probs=162.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
.++|+++||||+|+||++++++|+++| ++|++++|++..... ... ..++++++.+|++|++++.+++++
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVS-------LAK--ECPGIEPVCVDLGDWDATEKALGGI 74 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH--HSTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHH--hccCCCcEEecCCCHHHHHHHHHHc
Confidence 356899999999999999999999999 599999997641100 000 013567889999999999999874
Q ss_pred --CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 85 --ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 85 --~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
+|+|||+|+... ..++++..+++|+.++.++++++... + .+++|++||..+|..
T Consensus 75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 142 (244)
T 1cyd_A 75 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT------------ 142 (244)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC------------
Confidence 799999999432 22345678999999999999988764 5 579999999988731
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
..+...|+.+|+..|.+++.++.+ .|++++++||+.++|+.... ..+.+...+..+. ...+++
T Consensus 143 ---~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 210 (244)
T 1cyd_A 143 ---FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERH---------PLRKFA 210 (244)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHS---------TTSSCB
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcC---------CccCCC
Confidence 123568999999999999887654 58999999999999875321 1122323332222 236899
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++|+|++++.+++.. .....|+.+++.++..
T Consensus 211 ~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 211 EVEDVVNSILFLLSDR---SASTSGGGILVDAGYL 242 (244)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSSEEEESTTGG
T ss_pred CHHHHHHHHHHHhCch---hhcccCCEEEECCCcc
Confidence 9999999999988621 1235688999988743
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=200.08 Aligned_cols=224 Identities=10% Similarity=0.068 Sum_probs=165.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|++++.++++
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDE---IQ--QLGGQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH---HH--HhCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976411000000 00 013468889999999999988876
Q ss_pred ----CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+|+... ...+++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 84 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 151 (255)
T 1fmc_A 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN------------ 151 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC------------
T ss_pred HhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC------------
Confidence 7999999999432 223457789999999999999885 44678999999998762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++.... ..+.+......+.+ ...++
T Consensus 152 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~ 219 (255)
T 1fmc_A 152 ---KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP---------IRRLG 219 (255)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS---------SCSCB
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCC---------cccCC
Confidence 1234578999999999998887643 48999999999999874322 22333333333322 24578
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCH
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~ 263 (467)
+++|+|++++.++... .....|++|+++++..+|+
T Consensus 220 ~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 220 QPQDIANAALFLCSPA---ASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTSCCCC
T ss_pred CHHHHHHHHHHHhCCc---cccCCCcEEEECCceeccC
Confidence 9999999999988520 1224688999999877664
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=195.17 Aligned_cols=210 Identities=11% Similarity=0.025 Sum_probs=163.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+... ....++.++.+|++|++++.++++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~--------------~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRN-YRVVATSRSIKP--------------SADPDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCCC--------------CSSTTEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhh--------------cccCceEEEEccCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 599999997641 112368999999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.|+.++++++ ++.+..++|++||...+..
T Consensus 92 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------- 161 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP---------- 161 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC----------
T ss_pred HHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC----------
Confidence 6999999999432 23456788999999999999987 4567789999999876521
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCCC---CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
.+..+...|+.+|+..|.+.+.++.+. |+++.+++||.+++|........ .... ......+.
T Consensus 162 ---~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~---~~~~---------~~p~~r~~ 226 (260)
T 3un1_A 162 ---MVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAETHS---TLAG---------LHPVGRMG 226 (260)
T ss_dssp ---BTTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGGGHH---HHHT---------TSTTSSCB
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHHHHH---HHhc---------cCCCCCCc
Confidence 022456789999999999988876544 89999999999999865431111 1111 12345678
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
+++|+|++++.+.+ .....|+++++.++...
T Consensus 227 ~~~dva~av~~L~~-----~~~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 227 EIRDVVDAVLYLEH-----AGFITGEILHVDGGQNA 257 (260)
T ss_dssp CHHHHHHHHHHHHH-----CTTCCSCEEEESTTGGG
T ss_pred CHHHHHHHHHHhcc-----cCCCCCcEEEECCCeec
Confidence 89999999998855 45678999999998544
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=196.49 Aligned_cols=229 Identities=17% Similarity=0.092 Sum_probs=158.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-----CCCCCeEEEEecCCCHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----LSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
.++++++||||+|+||++++++|+++| ++|++++|+........+. +... ....++.++.+|++|++++.+
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 80 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQETVRL---LGGPGSKEGPPRGNHAAFQADVSEARAARC 80 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT---C------------CCEEEECCTTSHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHH---HHhcCccccccCcceEEEEecCCCHHHHHH
Confidence 356899999999999999999999999 5999999976421100000 1000 011468899999999999888
Q ss_pred HHhC-------C-CEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCC
Q 012270 81 VLEG-------A-STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGS 140 (467)
Q Consensus 81 ~~~~-------~-D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~ 140 (467)
++++ + |+|||+|+... ...+++..+++|+.++.++++++... + ..++|++||...+.
T Consensus 81 ~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--- 157 (264)
T 2pd6_A 81 LLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV--- 157 (264)
T ss_dssp HHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH---
T ss_pred HHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc---
Confidence 7764 4 99999999432 23456778999999999999998764 4 56999999986652
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++++......+.+......+
T Consensus 158 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-------- 217 (264)
T 2pd6_A 158 ------------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEM-------- 217 (264)
T ss_dssp ------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGG--------
T ss_pred ------------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHHHHHHHHHh--------
Confidence 1134578999999999998887654 68999999999999987543222222222111
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHH
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~e 265 (467)
.....+++++|+|++++.++... .....|+.+++.++..++...
T Consensus 218 -~~~~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~~~~~~ 261 (264)
T 2pd6_A 218 -IPMGHLGDPEDVADVVAFLASED---SGYITGTSVEVTGGLFMAENL 261 (264)
T ss_dssp -CTTCSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC------
T ss_pred -CCCCCCCCHHHHHHHHHHHcCCc---ccCCCCCEEEECCCceecccc
Confidence 12235789999999999887521 134678999999987665444
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=198.24 Aligned_cols=236 Identities=10% Similarity=0.044 Sum_probs=159.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCC-CcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-DSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|++.......+. +. ......++.++.+|++|++++.++++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQ---ILAAGVSEQNVNSVVADVTTDAGQDEILSTT 80 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhcccCCCceeEEecccCCHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976411000000 00 00112368889999999999888876
Q ss_pred -----CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccc-cccCCCC
Q 012270 84 -----GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADV-VFDGSHD 142 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~v-yg~~~~~ 142 (467)
++|+|||+||... ..++++..+++|+.++.++++++... + .++|++||... +.
T Consensus 81 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~----- 154 (278)
T 1spx_A 81 LGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLH----- 154 (278)
T ss_dssp HHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSS-----
T ss_pred HHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEeccccccc-----
Confidence 7999999999432 33446778999999999999988764 5 79999999876 42
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HHH------HHHhcCCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLL------VNLAKPGW 210 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~---~~~------~~~~~~g~ 210 (467)
+..+...|+.+|+..|.+.+.++.+ +|++++++|||.+.++...... +.. .......
T Consensus 155 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (278)
T 1spx_A 155 ----------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC- 223 (278)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHH-
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhc-
Confidence 1123468999999999998887533 6899999999999988533210 001 1111110
Q ss_pred ceEEecCCCccccccchhHHHHHHHHHHHHhcccccc-CCCcEEEEcCCCCcCHHHHHHHHHHHc
Q 012270 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS-VAGMAFFITNLEPIKFWDFLSIILEGL 274 (467)
Q Consensus 211 ~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~-~~g~~yni~~~~~~s~~el~~~i~~~~ 274 (467)
.....+++++|+|++++.++... ... ..|+.|++.++...++.|+++.+.+++
T Consensus 224 --------~p~~~~~~~~dvA~~v~~l~s~~---~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 224 --------VPAGVMGQPQDIAEVIAFLADRK---TSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp --------CTTSSCBCHHHHHHHHHHHHCHH---HHTTCCSCEEEESTTGGGC------------
T ss_pred --------CCCcCCCCHHHHHHHHHHHcCcc---ccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 11235889999999999887520 112 578999999999999999999888754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-23 Score=192.91 Aligned_cols=222 Identities=15% Similarity=0.100 Sum_probs=162.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|++++.++++
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG-ARVIIADLDEAMATKAVED---LR--MEGHDVSSVVMDVTNTESVQNAVRSVH 85 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976411000000 00 013468899999999999888775
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ...++...+++|+.++.++++++.. .+..++|++||.+.+...
T Consensus 86 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 157 (260)
T 3awd_A 86 EQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN-------- 157 (260)
T ss_dssp HHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC--------
Confidence 6899999999432 1123467899999999999998865 367799999998765210
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-Cc-HHHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QL-VPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~-~~-~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++... .. .+.+...+..+. ...
T Consensus 158 -----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 223 (260)
T 3awd_A 158 -----RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGT---------PMG 223 (260)
T ss_dssp -----SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTC---------TTS
T ss_pred -----CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcC---------CcC
Confidence 2233478999999999999887655 6899999999999998654 11 123333332222 124
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+++++|+|++++.++... .....|+.|++.++.
T Consensus 224 ~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDA---ASLMTGAIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCch---hccCCCcEEEECCce
Confidence 5889999999999888521 134578899999874
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-24 Score=194.32 Aligned_cols=184 Identities=15% Similarity=0.012 Sum_probs=146.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---GA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---~~ 85 (467)
|+++||||+|+||++++++|+++ +|++++|++..... ..... .. +++.+|++|++++.++++ ++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~-------~~~~~--~~-~~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAE-------LAREV--GA-RALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHH-------HHHHH--TC-EECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHH-------HHHhc--cC-cEEEeeCCCHHHHHHHHHhcCCC
Confidence 58999999999999999999988 69999997641100 00001 11 788899999999999988 89
Q ss_pred CEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCC
Q 012270 86 STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (467)
Q Consensus 86 D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~ 158 (467)
|+|||+||... ...+++..+++|+.++.++++++++.+.+++|++||..+|. +..+..
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~---------------~~~~~~ 132 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV---------------QVPGFA 132 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH---------------SSTTBH
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc---------------CCCCcc
Confidence 99999999432 33456789999999999999999777788999999998873 224567
Q ss_pred hHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHH
Q 012270 159 LMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~ 235 (467)
.|+.+|...|.+++.++.+ .|++++++||+.++++... +++....++++++|+|++++
T Consensus 133 ~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~-------------------~~~~~~~~~~~~~dva~~~~ 193 (207)
T 2yut_A 133 AYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA-------------------PLGGPPKGALSPEEAARKVL 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG-------------------GGTSCCTTCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc-------------------ccCCCCCCCCCHHHHHHHHH
Confidence 8999999999999887654 6899999999999987410 12234478999999999999
Q ss_pred HHHH
Q 012270 236 CAAE 239 (467)
Q Consensus 236 ~al~ 239 (467)
.+++
T Consensus 194 ~~~~ 197 (207)
T 2yut_A 194 EGLF 197 (207)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9987
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=202.66 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=169.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|.+++.++++.
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQ---ISS-QTGNKVHAIQCDVRDPDMVQNTVSELI 99 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH-hcCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976411000000 000 0034688999999999998887753
Q ss_pred -----CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh-----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 85 -----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 85 -----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~-----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+|+|||+||... ...+++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 100 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 169 (302)
T 1w6u_A 100 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET---------- 169 (302)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH----------
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc----------
Confidence 699999999432 2344677999999999999888754 2457999999987763
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHH--HHHHHhcCCCceEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVP--LLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~-~~~~--~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++|||.++++... ...+ ........+. ..
T Consensus 170 -----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---------p~ 235 (302)
T 1w6u_A 170 -----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI---------PC 235 (302)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTC---------TT
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcC---------Cc
Confidence 1234568999999999999888655 6899999999999987421 1111 1111222221 22
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g 275 (467)
..+++++|+|++++.++... .....|+.|++.++..+++.|+++.+.+..|
T Consensus 236 ~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 236 GRLGTVEELANLAAFLCSDY---ASWINGAVIKFDGGEEVLISGEFNDLRKVTK 286 (302)
T ss_dssp SSCBCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred CCCCCHHHHHHHHHHHcCCc---ccccCCCEEEECCCeeeccCCccccchhhcc
Confidence 35789999999999887521 1234789999999988888888777766544
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-23 Score=193.45 Aligned_cols=226 Identities=14% Similarity=0.122 Sum_probs=162.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........+. +... ...++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQVDRLHEAARS---LKEK-FGVRVLEVAVDVATPEGVDAVVESV 79 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHH-HCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH---HHHh-cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976411000000 0000 02468889999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+..
T Consensus 80 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 150 (263)
T 3ai3_A 80 RSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP--------- 150 (263)
T ss_dssp HHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC---------
Confidence 6999999999432 224467789999999999988875 346789999999988731
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----------HHHHHhcCCCceE
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----------LLVNLAKPGWTKF 213 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-----------~~~~~~~~g~~~~ 213 (467)
..+...|+.+|+..|.+.+.++.+ +|++++++||+.+++|......+ .+.......
T Consensus 151 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (263)
T 3ai3_A 151 ------LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADE---- 220 (263)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHH----
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhc----
Confidence 123468999999999998887654 68999999999999875322111 111111110
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
......+++++|+|++++.++.. ......|+.|++.++...+
T Consensus 221 ----~~p~~~~~~~~dvA~~~~~l~s~---~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 221 ----HAPIKRFASPEELANFFVFLCSE---RATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp ----HCTTCSCBCHHHHHHHHHHHTST---TCTTCCSCEEEESTTCCCC
T ss_pred ----CCCCCCCcCHHHHHHHHHHHcCc---cccCCCCcEEEECCCcccc
Confidence 01234689999999999988751 0123568999999986654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-24 Score=200.22 Aligned_cols=228 Identities=14% Similarity=0.111 Sum_probs=166.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|+||++++++|+++| ++|++++|+....... .... ..++..+.+|++|++++.++++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDIERARQA-------AAEI-GPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH-------HHHH-CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-------HHHh-CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976421100 0001 2467899999999999888876
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++... + -.++|++||...+.
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 147 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR---------- 147 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc----------
Confidence 7999999999432 23456778999999999999988654 2 35899999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHh---cCCCceEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLA---KPGWTKFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~---~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+++|..... ..+.... ..+......++..+.
T Consensus 148 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ 221 (259)
T 4e6p_A 148 -----GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGV-DALFARYENRPRGEKKRLVGEAVPF 221 (259)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHH-HHHHHHHHTCCTTHHHHHHHHHSTT
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhh-hhhhhhhccCChHHHHHHHhccCCC
Confidence 1234568999999999999887643 489999999999999864322 1111111 112222222333456
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
..+.+++|+|++++.++.. ......|++|++.++..+|
T Consensus 222 ~r~~~~~dva~~v~~L~s~---~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 222 GRMGTAEDLTGMAIFLASA---ESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp SSCBCTHHHHHHHHHTTSG---GGTTCCSCEEEESTTSSCC
T ss_pred CCCcCHHHHHHHHHHHhCC---ccCCCCCCEEEECcChhcC
Confidence 7899999999999887641 1234578999999986553
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-23 Score=193.79 Aligned_cols=217 Identities=16% Similarity=0.093 Sum_probs=159.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||++++++|+++| ++|++++|+...... +... .++.+++.+|++|++++.++++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~--~~~~~~~~~D~~~~~~~~~~~~~~ 74 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDS-------LVRE--CPGIEPVCVDLGDWEATERALGSV 74 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHH--STTCEEEECCTTCHHHHHHHHTTC
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHH--cCCCCEEEEeCCCHHHHHHHHHHc
Confidence 356899999999999999999999999 599999997641100 0000 1256788999999999999986
Q ss_pred -CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+|+... ..++++..+++|+.++.++.+++... + .+++|++||...+.
T Consensus 75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 141 (244)
T 3d3w_A 75 GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------- 141 (244)
T ss_dssp CCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc-------------
Confidence 4899999999432 12345779999999999999888764 5 67999999987762
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCcccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++..... .+........+ .....++
T Consensus 142 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 210 (244)
T 3d3w_A 142 --AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNR---------IPLGKFA 210 (244)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHT---------CTTCSCB
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhh---------CCCCCCc
Confidence 1234578999999999999887644 589999999999998753210 01111111111 1235789
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++... .....|+.|++.++.
T Consensus 211 ~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~ 241 (244)
T 3d3w_A 211 EVEHVVNAILFLLSDR---SGMTTGSTLPVEGGF 241 (244)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred CHHHHHHHHHHHcCcc---ccCCCCCEEEECCCc
Confidence 9999999999988621 123578899999874
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=193.20 Aligned_cols=221 Identities=15% Similarity=0.088 Sum_probs=158.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|++++.++++
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAG-STVIITGTSGERAKAVAEE---IAN-KYGVKAHGVEMNLLSEESINKAFEEI 79 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HHH-HHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHH---HHh-hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999975411000000 000 012468889999999999988876
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+|+... ...+++..+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 80 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 150 (248)
T 2pnf_A 80 YNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTG--------- 150 (248)
T ss_dssp HHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHC---------
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCC---------
Confidence 7999999999432 22345678999999997766654 3457789999999865521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++........+........ ....+
T Consensus 151 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~ 215 (248)
T 2pnf_A 151 ------NVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQI---------PLGRF 215 (248)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTC---------TTSSC
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccHHHHHHHHhcC---------CCCCc
Confidence 123468999999999988877543 489999999999998864432222222222111 12468
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
++++|+|++++.++... .....|++|++.++
T Consensus 216 ~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 216 GSPEEVANVVLFLCSEL---ASYITGEVIHVNGG 246 (248)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCch---hhcCCCcEEEeCCC
Confidence 89999999999988621 12456899999886
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-22 Score=188.16 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=158.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........ ... ..++.++.+|++|++++.++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~-------~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEG-ATVLGLDLKPPAGEEPA-------AEL-GAAVRFRNADVTNEADATAALAFA 75 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSCC--------------------CEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHH-------HHh-CCceEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 59999999775211111 111 3468899999999999888776
Q ss_pred -----CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC----------CCCeEEEEcCccccc
Q 012270 84 -----GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVVF 137 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~----------~v~r~v~~SS~~vyg 137 (467)
++|++||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 76 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tpc_A 76 KQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD 155 (257)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc
Confidence 6999999999432 12456788999999999999988764 345799999998763
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 012270 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (467)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|+..+.+.+.++.+ +|+++++++||.+.++................
T Consensus 156 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~----- 215 (257)
T 3tpc_A 156 ---------------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAAS----- 215 (257)
T ss_dssp ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------CC-----
T ss_pred ---------------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHHHHHHhc-----
Confidence 1234568999999999988777654 68999999999999886443222222111111
Q ss_pred ecCCCcc-ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 215 IGSGENM-SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 215 ~g~g~~~-~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
... ..+.+++|+|++++.+++ .+...|+.+++.++..++
T Consensus 216 ----~p~~~r~~~~~dva~~v~~l~s-----~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 216 ----VPFPPRLGRAEEYAALVKHICE-----NTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp ----SSSSCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCC-
T ss_pred ----CCCCCCCCCHHHHHHHHHHHcc-----cCCcCCcEEEECCCccCC
Confidence 122 457889999999999987 456789999999986543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=188.46 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=159.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|++++.++++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG-DRVAALDLSAETLEETART---HWH-AYADKVLRVRADVADEGDVNAAIAATME 76 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HST-TTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH-hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 5999999976411000000 000 012468899999999999988876
Q ss_pred ---CCCEEEEcccCCCC----------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ---GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ---~~D~Vih~aa~~~~----------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||.... .++++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 77 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------- 147 (250)
T 2cfc_A 77 QFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV--------- 147 (250)
T ss_dssp HHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc---------
Confidence 79999999994321 23456789999999987776654 44778999999987762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++++...... +.+...+..+. ..
T Consensus 148 ------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 212 (250)
T 2cfc_A 148 ------AFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARI---------PQ 212 (250)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTC---------TT
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcC---------CC
Confidence 1134568999999999998887643 4899999999999998653211 22323232222 12
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+.+++|+|++++.++... .....|+.+++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGED---ATYVNGAALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTT---CTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCch---hhcccCCEEEECCce
Confidence 35789999999999988621 123568899998863
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=186.66 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=165.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|..........+ .+. ....++..+.+|++|.+++.++++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 77 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEG-YNVAVNYAGSKEKAEAVVE--EIK--AKGVDSFAIQANVADADEVKAMIKEVV 77 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5998888754211000000 000 113468889999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... ..++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 146 (246)
T 3osu_A 78 SQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV----------- 146 (246)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC-----------
Confidence 6899999999432 23446779999999999999998 555677999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++. .+|+++.+++||.+.++......+.+......+.+ ...+.
T Consensus 147 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~~ 213 (246)
T 3osu_A 147 ----GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIP---------LARFG 213 (246)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCT---------TCSCB
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCC---------CCCCc
Confidence 123457899999999998887764 46899999999999998766555555555444332 34577
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++... .....|++|++.++.
T Consensus 214 ~~~dva~~v~~l~s~~---~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 214 QDTDIANTVAFLASDK---AKYITGQTIHVNGGM 244 (246)
T ss_dssp CHHHHHHHHHHHTSGG---GTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCcc---ccCCCCCEEEeCCCc
Confidence 8999999999887521 234569999999874
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=187.95 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=150.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|+++| ++|+++ +|++.......+. +. ....++.++.+|++|++++.++++
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNGSPASTSLDATAEE---FK--AAGINVVVAKGDVKNPEDVENMVKTA 77 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECTTCSHHHHHHHH---HH--HTTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCcCHHHHHHHHHH---HH--hcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 56899999999999999999999999 599998 5543210000000 00 013468899999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 78 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 147 (247)
T 2hq1_A 78 MDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII---------- 147 (247)
T ss_dssp HHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc----------
Confidence 6999999999432 3456778999999999988888764 4678999999985431
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+++.++.+ .|+++++++|+.+.++......+........+. ....+
T Consensus 148 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~ 213 (247)
T 2hq1_A 148 -----GNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNI---------PLKRF 213 (247)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTS---------TTSSC
T ss_pred -----CCCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchHHHHHHHhhC---------CCCCC
Confidence 1123568999999999998887543 489999999999976532221122222222221 23468
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++++|+|++++.++... .....|+.|++.++.
T Consensus 214 ~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 214 GTPEEVANVVGFLASDD---SNYITGQVINIDGGL 245 (247)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred CCHHHHHHHHHHHcCcc---cccccCcEEEeCCCc
Confidence 89999999999887521 123568899999874
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=193.59 Aligned_cols=222 Identities=11% Similarity=0.044 Sum_probs=161.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCC-CCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST-QSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..+|+++||||+|+||++++++|+++| ++|++++|+ +.......+. +. ....++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAG-AKVGLHGRKAPANIDETIAS---MR--ADGGDAAFFAADLATSEACQQLVDE 78 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCCTTHHHHHHH---HH--HTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEECCCchhhHHHHHHH---HH--hcCCceEEEECCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 599999997 4310000000 00 012468899999999999988876
Q ss_pred ------CCCEEEEcccC-CC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C--C---CeEEEEcCccccccCC
Q 012270 84 ------GASTVFYVDAT-DL-------NTDDFYNCYMIIVQGAKNVVTACREC----K--V---RRLVYNSTADVVFDGS 140 (467)
Q Consensus 84 ------~~D~Vih~aa~-~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~--v---~r~v~~SS~~vyg~~~ 140 (467)
++|+|||+|+. .. ...+++..+++|+.++.++++++... + . .++|++||...+..
T Consensus 79 ~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-- 156 (258)
T 3afn_B 79 FVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG-- 156 (258)
T ss_dssp HHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC--
T ss_pred HHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC--
Confidence 79999999995 22 11235678899999999998876532 2 2 68999999876521
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++......+.+...+..+.
T Consensus 157 ------------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~------- 217 (258)
T 3afn_B 157 ------------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGI------- 217 (258)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTC-------
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccCHHHHHHHhccC-------
Confidence 1124568999999999998887543 489999999999999865443344444443332
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccc-cCCCcEEEEcCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMV-SVAGMAFFITNLE 259 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~-~~~g~~yni~~~~ 259 (467)
....+++++|+|++++.++... .. ...|+.|++.++.
T Consensus 218 --~~~~~~~~~dva~~~~~l~~~~---~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 218 --PMGRFGTAEEMAPAFLFFASHL---ASGYITGQVLDINGGQ 255 (258)
T ss_dssp --TTCSCBCGGGTHHHHHHHHCHH---HHTTCCSEEEEESTTS
T ss_pred --CCCcCCCHHHHHHHHHHHhCcc---hhccccCCEEeECCCc
Confidence 2347899999999999988521 11 3468999999864
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=184.37 Aligned_cols=218 Identities=14% Similarity=0.061 Sum_probs=150.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+.. ... .++..+.+|++|++++.++++
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~-----------~~~----~~~~~~~~D~~d~~~~~~~~~~~~ 69 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFT-----------QEQ----YPFATEVMDVADAAQVAQVCQRLL 69 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCCC-----------SSC----CSSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCchh-----------hhc----CCceEEEcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 59999999764 111 137889999999999988876
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 70 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 138 (250)
T 2fwm_X 70 AETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT----------- 138 (250)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC-----------
Confidence 6899999999432 22456789999999999999988 445678999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-H-HHHH-HhcCCCceEEecCCCccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-P-LLVN-LAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~-~~~~-~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++...... . .... ...... ..........
T Consensus 139 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~ 212 (250)
T 2fwm_X 139 ----PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFG--EQFKLGIPLG 212 (250)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------------
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhh--hcccccCCCC
Confidence 1234568999999999998887643 5899999999999988543211 0 0000 000000 0000011223
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+.+++|+|++++.++... .....|+.+++.++..
T Consensus 213 ~~~~p~dvA~~v~~l~s~~---~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 213 KIARPQEIANTILFLASDL---ASHITLQDIVVDGGST 247 (250)
T ss_dssp ---CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHhCcc---ccCCCCCEEEECCCcc
Confidence 5789999999999988521 1346789999988743
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-23 Score=193.66 Aligned_cols=221 Identities=11% Similarity=0.085 Sum_probs=146.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---- 82 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|.+++.+++
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSK---WQ--KKGFQVTGSVCDASLRPEREKLMQTVS 86 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCeeEEEECCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 5999999976411000000 00 01246888999999999888776
Q ss_pred ----hCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 83 ----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 83 ----~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
.++|+|||+||... ..++++..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 156 (266)
T 1xq1_A 87 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV---------- 156 (266)
T ss_dssp HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------------
T ss_pred HHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc----------
Confidence 46899999999432 23445678999999999999998 455788999999987763
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCcccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++...... +.+....... .....
T Consensus 157 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~ 222 (266)
T 1xq1_A 157 -----SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISR---------KPLGR 222 (266)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---------------------------------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhc---------CCCCC
Confidence 1134578999999999999887644 4899999999999998644321 1111111111 11235
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++++|+|++++.++... .....|+.+++.++..
T Consensus 223 ~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 223 FGEPEEVSSLVAFLCMPA---ASYITGQTICVDGGLT 256 (266)
T ss_dssp -CCGGGGHHHHHHHTSGG---GTTCCSCEEECCCCEE
T ss_pred CcCHHHHHHHHHHHcCcc---ccCccCcEEEEcCCcc
Confidence 789999999999887520 1235688999998743
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-23 Score=198.24 Aligned_cols=241 Identities=14% Similarity=0.115 Sum_probs=174.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.... ...++.++.+|++|++++.++++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQE---LEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976421100000 11111 11268889999999999887765
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... ..++++..+++|+.|+.++++++... +-.++|++||...+.
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 156 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN--------- 156 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS---------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC---------
Confidence 5899999999521 22345779999999999999987754 344999999998762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+.++..... ........... ...
T Consensus 157 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~p~ 221 (281)
T 3svt_A 157 ------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMC---------TPL 221 (281)
T ss_dssp ------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHH---------CSS
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhc---------CCC
Confidence 2234578999999999998887643 469999999999988753211 01122222111 123
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC-HHHHHHHHHHHcCCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQR 278 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s-~~el~~~i~~~~g~~~ 278 (467)
..+.+++|+|++++.++... .....|+.+++.++...+ ..|+++.+.+.+|.+.
T Consensus 222 ~r~~~~~dva~~~~~l~s~~---~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 222 PRQGEVEDVANMAMFLLSDA---ASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp SSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred CCCCCHHHHHHHHHHHhCcc---cCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 45778999999999888521 234579999999987766 7788888888888653
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=187.65 Aligned_cols=217 Identities=14% Similarity=0.083 Sum_probs=158.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|+||++++++|+++| ++|++++|+...... ..+.. ..++.++.+|++|++++.++++
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEA-------QAKKL-GNNCVFAPADVTSEKDVQTALALAK 81 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHHH-------HHHHH-CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcHhHHH-------HHHHh-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599999997642100 00001 2468899999999999988876
Q ss_pred ----CCCEEEEcccCCC-------------CCCChhhHHHhhHHHHHHHHHHHHhC----------CCCeEEEEcCcccc
Q 012270 84 ----GASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVV 136 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------------~~~~~~~~~~~nv~g~~~ll~aa~~~----------~v~r~v~~SS~~vy 136 (467)
++|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~ 161 (265)
T 2o23_A 82 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 161 (265)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred HHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhc
Confidence 7999999999432 22346778999999999999998765 56799999999876
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE
Q 012270 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213 (467)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~ 213 (467)
. +..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++.....-...........
T Consensus 162 ~---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~--- 223 (265)
T 2o23_A 162 E---------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQV--- 223 (265)
T ss_dssp H---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTC---
T ss_pred C---------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHHHHHHHcC---
Confidence 3 1124568999999999888776543 589999999999988753321111111111111
Q ss_pred EecCCCcc-ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 214 IIGSGENM-SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 214 ~~g~g~~~-~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.. ..+++++|+|++++.+++ .+...|+.+++.++...
T Consensus 224 ------~~~~~~~~~~dva~~~~~l~~-----~~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 224 ------PFPSRLGDPAEYAHLVQAIIE-----NPFLNGEVIRLDGAIRM 261 (265)
T ss_dssp ------SSSCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCC
T ss_pred ------CCcCCCCCHHHHHHHHHHHhh-----cCccCceEEEECCCEec
Confidence 11 357889999999999987 46678999999987543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=190.95 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=157.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC-CCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++| +........+. +.. ...++.++.+|++|++++.++++
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~---l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 93 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAE---LKK--LGAQGVAIQADISKPSEVVALFDKA 93 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HHH--TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHH---HHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 45799999999999999999999999 59999998 33210000000 000 13468889999999999988876
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+|+... ...+++..+++|+.++.++++++... + +++|++||...+..
T Consensus 94 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~---------- 162 (274)
T 1ja9_A 94 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMT---------- 162 (274)
T ss_dssp HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCC----------
T ss_pred HHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccC----------
Confidence 7899999999432 22345678999999999999988775 4 69999999987611
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC------------cH-HHHHHHhcCCCce
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ------------LV-PLLVNLAKPGWTK 212 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~------------~~-~~~~~~~~~g~~~ 212 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++.... .. .......
T Consensus 163 ----~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 232 (274)
T 1ja9_A 163 ----GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGL------ 232 (274)
T ss_dssp ----SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHH------
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHH------
Confidence 1123468999999999999887644 48999999999998763210 00 1111111
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++....++++++|+|++++.++... .....|+.|+++++
T Consensus 233 ---~~~~~~~~~~~~~dva~~i~~l~~~~---~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 233 ---ANMNPLKRIGYPADIGRAVSALCQEE---SEWINGQVIKLTGG 272 (274)
T ss_dssp ---HHTSTTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTT
T ss_pred ---HhcCCCCCccCHHHHHHHHHHHhCcc---cccccCcEEEecCC
Confidence 12233457899999999999988621 12246889999886
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=187.88 Aligned_cols=220 Identities=15% Similarity=0.078 Sum_probs=157.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+|+++||||+|+||++++++|+++| ++|+++ +|+........+. +.. ...++.++.+|++|++++.++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G-~~v~~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQ---IEA--YGGQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HHH--HTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHH---HHh--cCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999 588884 7765311000000 000 12457889999999999988876
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ...+++..+++|+.++.++++++... +..|+|++||...+.
T Consensus 75 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 143 (244)
T 1edo_A 75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------- 143 (244)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------
T ss_pred HHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcC-----------
Confidence 6899999999432 22445678999999999999988763 678999999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+........ ....++
T Consensus 144 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 210 (244)
T 1edo_A 144 ----GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI---------PLGRTG 210 (244)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSC---------TTCSCB
T ss_pred ----CCCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChHHHHHHhhcC---------CCCCCC
Confidence 1123568999999999888876543 589999999999998743322222322222211 124588
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++... ......|+.|++.++.
T Consensus 211 ~~~dva~~~~~l~~~~--~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 211 QPENVAGLVEFLALSP--AASYITGQAFTIDGGI 242 (244)
T ss_dssp CHHHHHHHHHHHHHCS--GGGGCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCCC--ccCCcCCCEEEeCCCc
Confidence 9999999999988410 0123568999999874
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=190.16 Aligned_cols=219 Identities=12% Similarity=0.076 Sum_probs=153.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEE-EEecCCCHHHHHHHHh--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEY-HQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~Dl~d~~~l~~~~~-- 83 (467)
||+|+||||+|+||++++++|+++| ++|+++ +|+........+. +.. ...++.. +.+|++|.+++.++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G-~~v~~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG-FALAIHYGQNREKAEEVAEE---ARR--RGSPLVAVLGANLLEAEAATALVHQA 74 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESSCHHHHHHHHHH---HHH--TTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHH---HHh--cCCceEEEEeccCCCHHHHHHHHHHH
Confidence 4789999999999999999999999 589988 7765311000000 000 1234566 8999999999887754
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHH----HHHhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~----aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++.+ .+++.+.+|+|++||...+..
T Consensus 75 ~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 145 (245)
T 2ph3_A 75 AEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILG--------- 145 (245)
T ss_dssp HHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC---------
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccC---------
Confidence 6999999999432 223456789999999555554 455567889999999866521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+......+. ....+
T Consensus 146 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~ 210 (245)
T 2ph3_A 146 ------NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQI---------PAGRF 210 (245)
T ss_dssp ------CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTC---------TTCSC
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcC---------CCCCC
Confidence 123468999999999888877543 489999999999988743322222222222211 12468
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++++|+|++++.++... .....|+.|++.++.
T Consensus 211 ~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 211 GRPEEVAEAVAFLVSEK---AGYITGQTLCVDGGL 242 (245)
T ss_dssp BCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCcc---cccccCCEEEECCCC
Confidence 89999999999887521 123468899998863
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=190.53 Aligned_cols=225 Identities=13% Similarity=0.145 Sum_probs=162.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||++++++|+++| ++|++++|........... ... ....++.++.+|++|++++.++++
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 79 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKG-YSVTVTYHSDTTAMETMKE--TYK--DVEERLQFVQADVTKKEDLHKIVEEA 79 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HTG--GGGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHH--HHH--hcCCceEEEEecCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 5999987765311100000 000 012468999999999999888876
Q ss_pred -----CCCEEEEcccC--CC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDAT--DL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~--~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||. .. ..++++..+++|+.++.++++++ ++.+..++|++||.+.++..
T Consensus 80 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------ 153 (264)
T 3i4f_A 80 MSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP------ 153 (264)
T ss_dssp HHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC------
T ss_pred HHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC------
Confidence 68999999993 11 22345778999999999999998 55677899999998654211
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.++++......+.......... ...
T Consensus 154 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~ 217 (264)
T 3i4f_A 154 -------GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHNT---------PIG 217 (264)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHHHHC-----------------
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccHHHHHHHhhcC---------CCC
Confidence 2234578999999999998877654 689999999999999876655554433222221 224
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+.+++|+|++++.++... .....|+++++.++-.
T Consensus 218 r~~~~~dva~~v~~l~s~~---~~~itG~~i~vdGG~~ 252 (264)
T 3i4f_A 218 RSGTGEDIARTISFLCEDD---SDMITGTIIEVTGAVD 252 (264)
T ss_dssp CCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESCSCC
T ss_pred CCcCHHHHHHHHHHHcCcc---cCCCCCcEEEEcCcee
Confidence 5788999999999988621 2345799999999844
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=185.84 Aligned_cols=217 Identities=15% Similarity=0.114 Sum_probs=164.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+....... .... ..++..+.+|++|++++.++++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAG-ARVVLADLPETDLAGA-------AASV-GRGAVHHVVDLTNEVSVRALIDFT 79 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSCHHHH-------HHHH-CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHH-------HHHh-CCCeEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976521000 0001 3568899999999999888876
Q ss_pred -----CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+|+... ..++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------- 151 (271)
T 3tzq_B 80 IDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA-------- 151 (271)
T ss_dssp HHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------
T ss_pred HHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC--------
Confidence 6899999999541 22345679999999999999998 666778999999987762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEecCCCcc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ +|+++++++||.++++... .............. ..
T Consensus 152 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~~ 215 (271)
T 3tzq_B 152 -------AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHH---------LA 215 (271)
T ss_dssp -------BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTS---------TT
T ss_pred -------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcC---------CC
Confidence 2234578999999999998887655 6899999999999998654 22233333333322 22
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+.+++|+|++++.++..- .....|+++++.++
T Consensus 216 ~r~~~p~dvA~~v~~L~s~~---~~~itG~~i~vdGG 249 (271)
T 3tzq_B 216 GRIGEPHEIAELVCFLASDR---AAFITGQVIAADSG 249 (271)
T ss_dssp SSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCcc---cCCcCCCEEEECCC
Confidence 34678999999999888521 23467999999998
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=187.35 Aligned_cols=220 Identities=14% Similarity=0.073 Sum_probs=159.1
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.+...++|+++||||+|+||++++++|+++| ++|++++|+... ..++..+.+|++|++++.+
T Consensus 1 m~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----------------~~~~~~~~~Dl~~~~~v~~ 63 (264)
T 2dtx_A 1 MGFSDLRDKVVIVTGASMGIGRAIAERFVDEG-SKVIDLSIHDPG----------------EAKYDHIECDVTNPDQVKA 63 (264)
T ss_dssp -CCGGGTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSCCC----------------SCSSEEEECCTTCHHHHHH
T ss_pred CCccccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEecCccc----------------CCceEEEEecCCCHHHHHH
Confidence 55555567899999999999999999999999 599999997641 2367889999999999888
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCC
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~ 142 (467)
+++ ++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 64 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----- 138 (264)
T 2dtx_A 64 SIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI----- 138 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc-----
Confidence 776 6999999999432 2245678999999999998888764 3567999999997762
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCC--ceEEEEeCCCcccCCCCCcHHHHHHHhc--CC----CceEE
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAK--PG----WTKFI 214 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g--~~~~ilRp~~i~G~~~~~~~~~~~~~~~--~g----~~~~~ 214 (467)
+..+...|+.+|+..|.+.+.++.+.+ +++++++||.+.++.. ..+..... .. .....
T Consensus 139 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~ 204 (264)
T 2dtx_A 139 ----------ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLV----RKAAELEVGSDPMRIEKKISE 204 (264)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHH----HHHHHHHHCSCHHHHHHHHHH
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcch----hhhhhcccccCchhhHHHHHH
Confidence 113456899999999999888764332 9999999999976531 11110000 00 00000
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.........+++++|+|++++.++... .....|+.+++.++.
T Consensus 205 ~~~~~p~~~~~~p~dvA~~v~~l~s~~---~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 205 WGHEHPMQRIGKPQEVASAVAFLASRE---ASFITGTCLYVDGGL 246 (264)
T ss_dssp HHHHSTTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCch---hcCCCCcEEEECCCc
Confidence 001112346889999999999988521 124678999998873
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=189.71 Aligned_cols=238 Identities=16% Similarity=0.102 Sum_probs=164.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC--CCCCCC-----cCCCCCeEEEEecCCCHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES--NSLLPD-----SLSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~-----~~~~~~v~~~~~Dl~d~~~l 78 (467)
..+|+++||||+|+||++++++|+++| ++|++++|++......... ...+.. .....++.++.+|++|++++
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 356899999999999999999999999 5999999975321100000 000000 01135788999999999998
Q ss_pred HHHHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCC
Q 012270 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGS 140 (467)
Q Consensus 79 ~~~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~ 140 (467)
.++++ ++|++||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 163 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS--- 163 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC---
Confidence 87775 6899999999432 234567889999999999999864 34567999999987762
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCC----c
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGW----T 211 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~----~ 211 (467)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+++|....... .+........ .
T Consensus 164 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T 3s55_A 164 ------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVE 231 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHH
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHH
Confidence 2234568999999999998887654 58999999999999987543110 0000000000 0
Q ss_pred eEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 212 ~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
............+.+++|+|++++.++... .....|+++++.++...+
T Consensus 232 ~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~---~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 232 SVFASLHLQYAPFLKPEEVTRAVLFLVDEA---SSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHCSSSCSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGG
T ss_pred HHHHhhhccCcCCCCHHHHHHHHHHHcCCc---ccCCCCCEEEECCCcccC
Confidence 000011122367899999999999988621 234569999999986543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-22 Score=186.34 Aligned_cols=218 Identities=13% Similarity=0.032 Sum_probs=156.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCe-EEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~-- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|++..... ..+.. ..++ .++.+|++|++++.++++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASG-ARLILIDREAAALDR-------AAQEL-GAAVAARIVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-GGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-cccceeEEEEecCCHHHHHHHHHHH
Confidence 35789999999999999999999999 599999997641100 00000 1245 789999999999887763
Q ss_pred ----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||.... .++++..+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 81 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 151 (254)
T 2wsb_A 81 EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN--------- 151 (254)
T ss_dssp HHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred HhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC---------
Confidence 68999999994321 23346788999999777777654 4577899999999876311
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.++++...... +.+........ ....
T Consensus 152 ----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~ 218 (254)
T 2wsb_A 152 ----RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMT---------PMGR 218 (254)
T ss_dssp ----SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTS---------TTSS
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcC---------CCCC
Confidence 2234478999999999998887644 4899999999999987432110 12222222211 1246
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+++++|+|++++.++... .....|+.+++.++
T Consensus 219 ~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 219 CGEPSEIAAAALFLASPA---ASYVTGAILAVDGG 250 (254)
T ss_dssp CBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHHhCcc---cccccCCEEEECCC
Confidence 889999999999988521 12357889999886
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=186.69 Aligned_cols=218 Identities=12% Similarity=0.042 Sum_probs=158.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|++..... ..... ..++..+.+|++|++++.++++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~d~~~v~~~~~~~~ 81 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDVMAAQA-------VVAGL-ENGGFAVEVDVTKRASVDAAMQKAI 81 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHTC-TTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHH-hcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 599999997641100 00001 1267889999999999988876
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++... + ..++|++||...+.
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 151 (263)
T 3ak4_A 82 DALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV---------- 151 (263)
T ss_dssp HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc----------
Confidence 7999999999432 22346779999999999999887653 4 67999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-----------HHHHHHhcCCCceE
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPGWTKF 213 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-----------~~~~~~~~~g~~~~ 213 (467)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++...... +.......
T Consensus 152 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------ 220 (263)
T 3ak4_A 152 -----GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYV------ 220 (263)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHH------
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHH------
Confidence 1123568999999999988877543 4899999999999887422111 11111111
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.......+++++|+|++++.++... .....|+.|++.++..
T Consensus 221 ---~~~p~~~~~~~~dvA~~v~~l~s~~---~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 221 ---SLTPLGRIEEPEDVADVVVFLASDA---ARFMTGQGINVTGGVR 261 (263)
T ss_dssp ---HTCTTCSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESSSSS
T ss_pred ---hcCCCCCCcCHHHHHHHHHHHhCcc---ccCCCCCEEEECcCEe
Confidence 1122346899999999999988521 1245789999998743
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=187.75 Aligned_cols=228 Identities=16% Similarity=0.145 Sum_probs=161.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|.+++.++++.
T Consensus 13 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 87 (265)
T 1h5q_A 13 VNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEK---VGK-EFGVKTKAYQCDVSNTDIVTKTIQQID 87 (265)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHH---HHH-HHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCcchhhHHHHHH---HHH-hcCCeeEEEEeeCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 6999999965411000000 000 0134688999999999998877653
Q ss_pred -----CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCC
Q 012270 85 -----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 85 -----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+|+|||+||... ..++++..+++|+.++.++++++... + .+++|++||...+.....
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------ 161 (265)
T 1h5q_A 88 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS------ 161 (265)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE------
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc------
Confidence 899999999432 22345678999999999999988654 3 479999999877632110
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+.. +..+...|+.+|+..|.+++.++.+ .|++++++||+.++++......+.......... ....+
T Consensus 162 ~~~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~ 230 (265)
T 1h5q_A 162 SLN--GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNI---------PLNRF 230 (265)
T ss_dssp ETT--EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTC---------TTSSC
T ss_pred ccc--ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchhHHHHHHhcC---------cccCC
Confidence 001 2345678999999999999887643 489999999999998864432233322222111 12357
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++++|+|++++.++... .....|+.|++.++.
T Consensus 231 ~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~ 262 (265)
T 1h5q_A 231 AQPEEMTGQAILLLSDH---ATYMTGGEYFIDGGQ 262 (265)
T ss_dssp BCGGGGHHHHHHHHSGG---GTTCCSCEEEECTTG
T ss_pred CCHHHHHHHHHhhccCc---hhcCcCcEEEecCCE
Confidence 89999999999988521 123678999999874
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=190.26 Aligned_cols=232 Identities=14% Similarity=0.169 Sum_probs=158.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|........... .+. .....++.++.+|++|++++.++++
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~--~~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAG-ANIVLNGFGAPDEIRTVTD--EVA-GLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEECCCCHHHHHHHHH--HHH-TTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHH--HHh-hccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 356799999999999999999999999 5999999854211000000 000 0113578899999999999888775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... +.++++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 168 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV---------- 168 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc----------
Confidence 6899999999432 23456779999999999999987 444667999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHH--hcCCCc-eEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL--AKPGWT-KFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~--~~~g~~-~~~~g~g~~~ 221 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++......+..... ...... .....++...
T Consensus 169 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 243 (281)
T 3v2h_A 169 -----ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPT 243 (281)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCTT
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCC
Confidence 1233568999999999998877643 5899999999999988644322211100 000000 0123344566
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+++++|+|++++.++.. ......|+++++.++.
T Consensus 244 ~r~~~~edvA~~v~~L~s~---~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 244 KKFITVEQVASLALYLAGD---DAAQITGTHVSMDGGW 278 (281)
T ss_dssp CSCBCHHHHHHHHHHHHSS---GGGGCCSCEEEESTTG
T ss_pred CCccCHHHHHHHHHHHcCC---CcCCCCCcEEEECCCc
Confidence 7899999999999988851 1234679999999873
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-22 Score=186.19 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=157.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|++....... .......++.++.+|++|++++.++++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAA------KSVGTPDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHH------HHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH------HHhhccCceEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 59999999764110000 000111478999999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCC-CeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKV-RRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v-~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+|+... ..++++..+++|+.++.++.+++ ++.+. +++|++||...+..
T Consensus 77 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 148 (251)
T 1zk4_A 77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG-------- 148 (251)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC--------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC--------
Confidence 4899999999432 12345678999999877766554 45566 79999999987631
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~-----~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
..+...|+.+|+..|.+++.++. ..|++++++||+.++++............... .....
T Consensus 149 -------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~--------~~~~~ 213 (251)
T 1zk4_A 149 -------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQR--------TKTPM 213 (251)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTST--------TTCTT
T ss_pred -------CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCchhhhHHHh--------hcCCC
Confidence 12456899999999999887653 47899999999999987432211111111011 11123
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+++++|+|++++.++... .....|+.+++.++.
T Consensus 214 ~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gG~ 248 (251)
T 1zk4_A 214 GHIGEPNDIAYICVYLASNE---SKFATGSEFVVDGGY 248 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCcc---cccccCcEEEECCCc
Confidence 46889999999999988521 123568999999874
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=192.65 Aligned_cols=223 Identities=11% Similarity=0.004 Sum_probs=160.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|.+++.++++
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQENVDRTVAT---LQ--GEGLSVTGTVCHVGKAEDRERLVAMAV 86 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5999999976411000000 00 012468889999999998887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++. +.+.+++|++||...|.
T Consensus 87 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 156 (260)
T 2zat_A 87 NLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH---------- 156 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC----------
Confidence 6999999999432 123456789999999999888875 45778999999998872
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++|+.+.++...... ........ ......
T Consensus 157 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~~~~~~ 222 (260)
T 2zat_A 157 -----PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMK---------ESLRIR 222 (260)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHH---------HHHTCS
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHH---------hcCCCC
Confidence 1234568999999999998887643 4899999999999877532110 00001111 111234
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
.+.+++|+|++++.++... .....|+++++.++...|
T Consensus 223 ~~~~~~dva~~v~~l~s~~---~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 223 RLGNPEDCAGIVSFLCSED---ASYITGETVVVGGGTASR 259 (260)
T ss_dssp SCBCGGGGHHHHHHHTSGG---GTTCCSCEEEESTTCCCC
T ss_pred CCCCHHHHHHHHHHHcCcc---cCCccCCEEEECCCcccc
Confidence 6889999999999887520 123478999999987665
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=183.62 Aligned_cols=225 Identities=18% Similarity=0.143 Sum_probs=164.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++..+.+|++|++++.++++
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTADIDACVAD---LDQ-LGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHT-TSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-hCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976421100000 000 112478899999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... ..++++..+++|+.++.++++++... +..++|++||......
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 153 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPIT--------- 153 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTB---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccC---------
Confidence 6999999999432 23446678999999999999987765 6789999999864210
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++||.++++......+.+........+ ...+
T Consensus 154 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~ 219 (262)
T 3pk0_A 154 -----GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIP---------AGAL 219 (262)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTST---------TSSC
T ss_pred -----CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCC---------CCCC
Confidence 1234568999999999999887654 6899999999999987432222333333333222 2347
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.+++|+|++++.++... .....|+++++.++..+
T Consensus 220 ~~p~dva~~v~~L~s~~---~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 220 GTPEDIGHLAAFLATKE---AGYITGQAIAVDGGQVL 253 (262)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTTTC
T ss_pred cCHHHHHHHHHHHhCcc---ccCCcCCEEEECCCeec
Confidence 78999999999887521 23467999999998543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=183.90 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=157.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+++|+||||+|+||+++++.|+++| ++|++++|+...... +.+. ...++.++.+|++|.+++.++++
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKS-------LGNA-LKDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHH-HCSSEEEEECCTTSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHH-------HHHH-hccCccEEEcCCCCHHHHHHHHHhc
Confidence 467899999999999999999999999 599999997641100 0000 12468889999999999998887
Q ss_pred -CCCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 -GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 -~~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|+|||+||.. ...++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 148 (249)
T 3f9i_A 83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA-------------- 148 (249)
T ss_dssp SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC----------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc--------------
Confidence 589999999932 24466789999999999999888753 3567999999987762
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
+..+...|+.+|+..|.+++.++.+ .|+++.+++||.+.++......+........+ .....+.+++
T Consensus 149 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 218 (249)
T 3f9i_A 149 -GNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQK---------IPLGTYGIPE 218 (249)
T ss_dssp -CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHHH---------CTTCSCBCHH
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHhc---------CCCCCCcCHH
Confidence 1234568999999999988877643 58999999999998876544333333222221 2335688899
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
|+|++++.++... .....|+.+++.++.
T Consensus 219 dva~~~~~l~s~~---~~~~tG~~~~vdgG~ 246 (249)
T 3f9i_A 219 DVAYAVAFLASNN---ASYITGQTLHVNGGM 246 (249)
T ss_dssp HHHHHHHHHHSGG---GTTCCSCEEEESTTS
T ss_pred HHHHHHHHHcCCc---cCCccCcEEEECCCE
Confidence 9999999988621 234579999999874
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=185.41 Aligned_cols=214 Identities=15% Similarity=0.090 Sum_probs=157.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+....... .... ..++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 75 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKAM-------AAEL-ADAARYVHLDVTQPAQWKAAVDTA 75 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH-------HHHT-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-------HHHh-hcCceEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976421000 0001 1247889999999999988876
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+..
T Consensus 76 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 146 (260)
T 1nff_A 76 VTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG--------- 146 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCC---------
Confidence 7999999999432 22346779999999997665554 4557789999999987621
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++... . .... .. ......+
T Consensus 147 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~--------~~~~-~~----~~~~~~~ 206 (260)
T 1nff_A 147 ------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-W--------VPED-IF----QTALGRA 206 (260)
T ss_dssp ------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-T--------SCTT-CS----CCSSSSC
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-c--------chhh-HH----hCccCCC
Confidence 123468999999999998887644 6899999999999988532 1 0001 00 1123467
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+++|+|++++.++... .....|+.|++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~---~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 207 AEPVEVSNLVVYLASDE---SSYSTGAEFVVDGGTV 239 (260)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGG
T ss_pred CCHHHHHHHHHHHhCcc---ccCCcCCEEEECCCee
Confidence 89999999999988521 1235689999999743
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-22 Score=185.74 Aligned_cols=225 Identities=12% Similarity=0.081 Sum_probs=157.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+.... ..+. +.. ...++.++.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~--~~~~---l~~--~~~~~~~~~~D~~~~~~v~~~~~~~~ 74 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAG-ANIVLNGFGDPAP--ALAE---IAR--HGVKAVHHPADLSDVAQIEALFALAE 74 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSCCHH--HHHH---HHT--TSCCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHH--HHHH---HHh--cCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999875410 0000 111 12467888999999999988877
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+..
T Consensus 75 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 144 (255)
T 2q2v_A 75 REFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVG---------- 144 (255)
T ss_dssp HHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccC----------
Confidence 7999999999432 22445778999999777766654 5667789999999977621
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc----eEEecCCCcc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT----KFIIGSGENM 221 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~----~~~~g~g~~~ 221 (467)
..+...|+.+|...+.+.+.++.+ .|++++++||+.+++|......... ... .+.. ..+.......
T Consensus 145 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~p~ 217 (255)
T 2q2v_A 145 -----STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDR-AAN-GGDPLQAQHDLLAEKQPS 217 (255)
T ss_dssp -----CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHH-HHH-TCCHHHHHHHHHTTTCTT
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccc-ccc-ccchHHHHHHHHhccCCC
Confidence 123468999999999988877643 5899999999999887432111000 000 0000 0000122234
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+++++|+|++++.++... .....|+.|++.++.
T Consensus 218 ~~~~~~~dvA~~~~~l~s~~---~~~~tG~~~~vdgG~ 252 (255)
T 2q2v_A 218 LAFVTPEHLGELVLFLCSEA---GSQVRGAAWNVDGGW 252 (255)
T ss_dssp CCCBCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhCCc---cCCCCCCEEEECCCc
Confidence 57899999999999887520 123568999999874
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-22 Score=192.85 Aligned_cols=232 Identities=15% Similarity=0.077 Sum_probs=158.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +.......++.++.+|++|++++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAA---LHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 81 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhhcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5999999976421000000 1111112468889999999999887765
Q ss_pred ----CCCEEEEcccCCCCCCChhhHHHhhHHHHHHH----HHHHHhCC---CCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 ----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNV----VTACRECK---VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~l----l~aa~~~~---v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++|+|||+||... ..+++..+++|+.++.++ ++.+++.+ ..++|++||...+..
T Consensus 82 ~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 146 (267)
T 2gdz_A 82 DHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-------------- 146 (267)
T ss_dssp HHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC--------------
T ss_pred HHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC--------------
Confidence 4799999999543 467888999999976554 44454443 579999999987621
Q ss_pred CCCCCChHHHHHHHHHHHHHhhc-----CCCCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCccccccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~-----~~~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
..+...|+.+|+..|.+.+.++ ...|+++++++||.+.++...... ......... .......+.....+++
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 223 (267)
T 2gdz_A 147 -VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIE--YKDHIKDMIKYYGILD 223 (267)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGG--GHHHHHHHHHHHCCBC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhh--HHHHHHHHhccccCCC
Confidence 1234689999999999887631 236899999999999766311110 000000000 0000000011235789
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHH
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~e 265 (467)
++|+|++++.++. .+...|+++++++++..++.|
T Consensus 224 ~~dvA~~v~~l~s-----~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 224 PPLIANGLITLIE-----DDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HHHHHHHHHHHHH-----CTTCSSCEEEEETTTEEEECC
T ss_pred HHHHHHHHHHHhc-----CcCCCCcEEEecCCCcccccC
Confidence 9999999999987 355789999999988777655
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=185.55 Aligned_cols=214 Identities=16% Similarity=0.071 Sum_probs=155.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||+++++.|+++| ++|++++|+.... .+.....++.++.+|++|++++.++++
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~----------~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHG-HRVIISYRTEHAS----------VTELRQAGAVALYGDFSCETGIMAFIDLLK 94 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESSCCHH----------HHHHHHHTCEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCChHHH----------HHHHHhcCCeEEECCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976421 011112247899999999999887775
Q ss_pred ----CCCEEEEcccCCCC------CCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN------TDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~------~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||.... .++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 95 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------ 162 (260)
T 3gem_A 95 TQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK------------ 162 (260)
T ss_dssp HHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT------------
T ss_pred HhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC------------
Confidence 58999999994321 233457899999999999988754 3567999999987762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+..+...|+.+|+..|.+.+.++.+. ++++.+++||.+..+.... ..+........ ....+..+
T Consensus 163 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~--~~~~~~~~~~~---------p~~r~~~~ 228 (260)
T 3gem_A 163 ---GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD--AAYRANALAKS---------ALGIEPGA 228 (260)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-----------------C---------CSCCCCCT
T ss_pred ---CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC--HHHHHHHHhcC---------CCCCCCCH
Confidence 22345689999999999888776432 4999999999998764321 11111111111 22345678
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
+|+|++++.+++ .+...|+++++.++..++
T Consensus 229 edva~~v~~L~~-----~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 229 EVIYQSLRYLLD-----STYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp HHHHHHHHHHHH-----CSSCCSCEEEESTTTTTC
T ss_pred HHHHHHHHHHhh-----CCCCCCCEEEECCCcccC
Confidence 999999999986 567889999999986654
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-22 Score=187.71 Aligned_cols=221 Identities=12% Similarity=-0.054 Sum_probs=151.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC---
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 84 (467)
||+++||||+|+||++++++|+++| ++|++++|+... ... . +.+|++|.+++.++++.
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~----------~~~-------~-~~~Dl~~~~~v~~~~~~~~~ 61 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAE----------VIA-------D-LSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSS----------EEC-------C-TTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchh----------hcc-------c-cccCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999999999 599999997641 000 1 56899999999998864
Q ss_pred -CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC-----c----
Q 012270 85 -ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET-----L---- 150 (467)
Q Consensus 85 -~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~-----~---- 150 (467)
+|+|||+||......+++..+++|+.++.++++++. +.+..|+|++||...+...... +..+. .
T Consensus 62 ~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--~~~~~~~~~~~~~~~ 139 (257)
T 1fjh_A 62 GMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK--NPLALALEAGEEAKA 139 (257)
T ss_dssp CCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG--CTTHHHHHHTCHHHH
T ss_pred CCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhcccccc--chhhhhhcccchhhh
Confidence 599999999655345689999999999999999886 4466899999999887311100 00000 0
Q ss_pred ------ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEecCCCc
Q 012270 151 ------TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 151 ------p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~~~g~g~~ 220 (467)
..+..+...|+.+|...|.+++.++.+ .|+++++++||.+.++....... ......... . ...
T Consensus 140 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~-----~--~~~ 212 (257)
T 1fjh_A 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK-----F--VPP 212 (257)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------C--CCS
T ss_pred hhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHh-----c--ccc
Confidence 002224568999999999999887654 68999999999998875432211 110000000 0 112
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+++++|+|++++.++... .....|+.+++.++.
T Consensus 213 ~~~~~~~~dvA~~~~~l~~~~---~~~~tG~~~~vdgG~ 248 (257)
T 1fjh_A 213 MGRRAEPSEMASVIAFLMSPA---ASYVHGAQIVIDGGI 248 (257)
T ss_dssp TTSCCCTHHHHHHHHHHTSGG---GTTCCSCEEEESTTH
T ss_pred cCCCCCHHHHHHHHHHHhCch---hcCCcCCEEEECCCc
Confidence 235789999999999987621 124678899998874
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=187.22 Aligned_cols=227 Identities=13% Similarity=-0.015 Sum_probs=161.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........ ... ..++.++.+|++|.+++.++++
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~-------~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRG-ATVIMAVRDTRKGEAAA-------RTM-AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHH-------TTS-SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH-------HHh-cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 59999999865211100 011 3468999999999999999988
Q ss_pred CCCEEEEcccCCC-----CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCC
Q 012270 84 GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (467)
Q Consensus 84 ~~D~Vih~aa~~~-----~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~ 158 (467)
++|+|||+||... ..++++..+++|+.|+.++++++.....+|+|++||...+...........+.. +..+..
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~--~~~~~~ 163 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSR--RYSPWL 163 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSS--CCCHHH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccccc--CCCCcc
Confidence 4699999999432 346678899999999999999999987789999999988743221111111112 334567
Q ss_pred hHHHHHHHHHHHHHhhcCC---CC--ceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 159 LMCDLKAQAEALVLFANNI---DG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~---~g--~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
.|+.||+..+.+.+.++.+ .| +++++++||.+..+........+...... . -..+-..+++|+|++
T Consensus 164 ~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~A~~ 234 (291)
T 3rd5_A 164 AYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMS-A--------ATRVVATDADFGARQ 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----------------------------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHH-H--------HHHHHhCCHHHHHHH
Confidence 8999999999988877644 24 99999999999877543321111111111 0 011233469999999
Q ss_pred HHHHHHHhccccccCCCcEEEEcCC
Q 012270 234 HVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 234 ~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
++.++. .+...|+.+++.++
T Consensus 235 ~~~l~~-----~~~~~G~~~~vdgG 254 (291)
T 3rd5_A 235 TLYAAS-----QDLPGDSFVGPRFG 254 (291)
T ss_dssp HHHHHH-----SCCCTTCEEEETTS
T ss_pred HHHHHc-----CCCCCCceeCCccc
Confidence 999988 45678888888765
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=187.76 Aligned_cols=220 Identities=11% Similarity=0.020 Sum_probs=156.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||+++++.|+++| ++|++++|++.......+. +.. ...++.++.+|++|.+++.++++
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~ 116 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDE---IKS--FGYESSGYAGDVSKKEEISEVINKIL 116 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHH---HHT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHH---HHh--cCCceeEEECCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999988865311000000 000 13468889999999999888774
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~---------- 186 (285)
T 2c07_A 117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG---------- 186 (285)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC----------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC----------
Confidence 5899999999432 223467789999999888887775 446789999999976631
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
..+...|+.+|...|.+++.++.+ .|++++++||+.+.++......+.+........ ....++
T Consensus 187 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 252 (285)
T 2c07_A 187 -----NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNI---------PAGRMG 252 (285)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTC---------TTSSCB
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhC---------CCCCCC
Confidence 123568999999999988877543 489999999999998854433333333322221 123588
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++... .....|+.+++.++.
T Consensus 253 ~~~dvA~~~~~l~~~~---~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 253 TPEEVANLACFLSSDK---SGYINGRVFVIDGGL 283 (285)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCCC---cCCCCCCEEEeCCCc
Confidence 9999999999888521 123578899998864
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=184.96 Aligned_cols=223 Identities=13% Similarity=0.113 Sum_probs=158.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+... +. ..+... + .++.+|++|++++.++++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-----~~---~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~ 72 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG-----KE---VAEAIG--G-AFFQVDLEDERERVRFVEEAA 72 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH-----HH---HHHHHT--C-EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhH-----HH---HHHHhh--C-CEEEeeCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599999997652 00 001111 3 788999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 73 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 141 (256)
T 2d1y_A 73 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------- 141 (256)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS-----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC-----------
Confidence 5899999999432 1234578999999999999888754 4678999999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc-CCCceEEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK-PGWTKFIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~-~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++|+.+.++. ...++.... .........+..+...+
T Consensus 142 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
T 2d1y_A 142 ----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA----VLEAIALSPDPERTRRDWEDLHALRRL 213 (256)
T ss_dssp ----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH----HHHHHC--------CHHHHTTSTTSSC
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch----hhhccccccCCHHHHHHHHhcCCCCCC
Confidence 1123568999999999998877643 58999999999997652 111100000 11100111222334578
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCH
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~ 263 (467)
++++|+|++++.++... .....|+.|++.++...++
T Consensus 214 ~~~~dvA~~~~~l~s~~---~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 214 GKPEEVAEAVLFLASEK---ASFITGAILPVDGGMTASF 249 (256)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGBC
T ss_pred cCHHHHHHHHHHHhCch---hcCCCCCEEEECCCccccc
Confidence 99999999999988621 1235789999999865543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-22 Score=189.48 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=158.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---- 82 (467)
++|+++||||+|+||++++++|+++| ++|++++|++.......+. +. ....++.++.+|++|++++.+++
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQ---WR--SKGFKVEASVCDLSSRSERQELMNTVA 81 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976411000000 00 01246788999999999988877
Q ss_pred ----hCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 83 ----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 83 ----~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
.++|+|||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 82 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 151 (260)
T 2ae2_A 82 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL---------- 151 (260)
T ss_dssp HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS----------
T ss_pred HHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc----------
Confidence 35999999999432 224467789999999999999884 45678999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHH---HhcCCCceEEecCCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVN---LAKPGWTKFIIGSGE 219 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~---~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++...... +.... .... ..
T Consensus 152 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---------~~ 217 (260)
T 2ae2_A 152 -----AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLID---------RC 217 (260)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHH---------TS
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHh---------cC
Confidence 1123468999999999999887644 4899999999999776311000 00000 1111 12
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
....+++++|+|++++.++.. ......|+.+++.++...
T Consensus 218 ~~~~~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 218 ALRRMGEPKELAAMVAFLCFP---AASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp TTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCc---cccCCCCCEEEECCCccc
Confidence 234688999999999988751 012357899999987543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-22 Score=186.28 Aligned_cols=232 Identities=16% Similarity=0.139 Sum_probs=157.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|++.......+. +.......++.++.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNG-ARLLLFSRNREKLEAAASR---IASLVSGAQVDIVAGDIREPGDIDRLFEKA 80 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHSTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhcCCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976411000000 0000002268899999999999988886
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 81 ~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 149 (260)
T 2z1n_A 81 RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR----------- 149 (260)
T ss_dssp HHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC-----------
Confidence 6999999999432 224567899999999977766654 45778999999998762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHH--HhcCCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN--LAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~--~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|++++++||+.++++........... ...................
T Consensus 150 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 225 (260)
T 2z1n_A 150 ----PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGR 225 (260)
T ss_dssp ----CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------CCTTSS
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCCCCC
Confidence 1123568999999999988877543 489999999999999864411100000 0000000000111112345
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+.+++|+|++++.++... .....|+.+++.++.
T Consensus 226 ~~~~~dva~~v~~l~s~~---~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 226 VGKPEELASVVAFLASEK---ASFITGAVIPVDGGA 258 (260)
T ss_dssp CCCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTT
T ss_pred ccCHHHHHHHHHHHhCcc---ccCCCCCEEEeCCCc
Confidence 789999999999887521 234578999998863
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=186.64 Aligned_cols=219 Identities=15% Similarity=0.125 Sum_probs=133.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|++++.++++
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAEAAEAVAKQ---IV--ADGGTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH---HH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 5999999976421100000 00 113468889999999999888776
Q ss_pred ----CCCEEEEcccCCC----------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 ----GASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ----~~D~Vih~aa~~~----------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...|
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~--------- 152 (253)
T 3qiv_A 82 AEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW--------- 152 (253)
T ss_dssp HHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc---------
Confidence 6899999998521 23445779999999976666655 44466799999999876
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEecCCCcc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~~~g~g~~~ 221 (467)
.+...|+.+|+..|.+++.++.+ .|+++.+++|+.++++......+ .+...+..+. ..
T Consensus 153 ---------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~~ 214 (253)
T 3qiv_A 153 ---------LYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGL---------PL 214 (253)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-----------------------------------
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccC---------CC
Confidence 12356999999999988877654 48999999999999886443221 2222222222 23
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
..+.+++|+|++++.++... .....|+.|++.++..+
T Consensus 215 ~~~~~~~dva~~~~~l~s~~---~~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 215 SRMGTPDDLVGMCLFLLSDE---ASWITGQIFNVDGGQII 251 (253)
T ss_dssp -----CCHHHHHHHHHHSGG---GTTCCSCEEEC------
T ss_pred CCCCCHHHHHHHHHHHcCcc---ccCCCCCEEEECCCeec
Confidence 45667899999999888521 23457999999998654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=186.44 Aligned_cols=224 Identities=16% Similarity=0.141 Sum_probs=163.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|++++.++++
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 114 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAG-ANVAVAARSPRELSSVTAE---LGE-LGAGNVIGVRLDVSDPGSCADAARTVV 114 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHH---HTT-SSSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHh-hCCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5999999986521110000 111 112478899999999998877764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.|+.++++++. +.+..++|++||...+..
T Consensus 115 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~---------- 184 (293)
T 3rih_A 115 DAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT---------- 184 (293)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTB----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccC----------
Confidence 5799999999432 234567899999999999999984 556789999999865310
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.++++......+.+........+ ...+.
T Consensus 185 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~~ 251 (293)
T 3rih_A 185 ----GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIP---------MGMLG 251 (293)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTST---------TSSCB
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCC---------CCCCC
Confidence 1234578999999999998877643 5899999999999987533222333333333332 23456
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.++|+|++++.++.. ......|+++++.++..+
T Consensus 252 ~p~dvA~~v~fL~s~---~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 252 SPVDIGHLAAFLATD---EAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTC
T ss_pred CHHHHHHHHHHHhCc---cccCCCCCEEEECCCccC
Confidence 789999999988752 123467999999998543
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-21 Score=181.21 Aligned_cols=220 Identities=11% Similarity=-0.003 Sum_probs=157.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC-CCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH----HHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI----SQIKKV 81 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~l~~~ 81 (467)
++|+++||||+|+||++++++|+++| ++|++++| +........+. +.. ....++.++.+|++|. +++.++
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~ 84 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAE---LNA-ARAGSAVLCKGDLSLSSSLLDCCEDI 84 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HHH-HSTTCEEEEECCCSSSTTHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHH---HHH-hcCCceEEEeccCCCccccHHHHHHH
Confidence 35789999999999999999999999 59999998 54310000000 000 0024688999999999 888777
Q ss_pred Hh-------CCCEEEEcccCCC-------CC-----------CChhhHHHhhHHHHHHHHHHHHhC---CC------CeE
Q 012270 82 LE-------GASTVFYVDATDL-------NT-----------DDFYNCYMIIVQGAKNVVTACREC---KV------RRL 127 (467)
Q Consensus 82 ~~-------~~D~Vih~aa~~~-------~~-----------~~~~~~~~~nv~g~~~ll~aa~~~---~v------~r~ 127 (467)
++ ++|+|||+||... .. .+++..+++|+.++.++++++... +. .++
T Consensus 85 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~i 164 (276)
T 1mxh_A 85 IDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEE
Confidence 65 6899999999432 11 445678999999999999999874 33 799
Q ss_pred EEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHH
Q 012270 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN 204 (467)
Q Consensus 128 v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~ 204 (467)
|++||...+. +..+...|+.+|+..|.+.+.++.+ .|+++++++||.++++ . ...+....
T Consensus 165 v~isS~~~~~---------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~-~~~~~~~~ 227 (276)
T 1mxh_A 165 VNLCDAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P-AMPQETQE 227 (276)
T ss_dssp EEECCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S-SSCHHHHH
T ss_pred EEECchhhcC---------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c-cCCHHHHH
Confidence 9999998762 1234568999999999998877643 4899999999999999 3 22233333
Q ss_pred HhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 205 LAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 205 ~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
......+ ..+++.+++|+|++++.++.. ......|+.+++.++.
T Consensus 228 ~~~~~~p--------~~r~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 228 EYRRKVP--------LGQSEASAAQIADAIAFLVSK---DAGYITGTTLKVDGGL 271 (276)
T ss_dssp HHHTTCT--------TTSCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred HHHhcCC--------CCCCCCCHHHHHHHHHHHhCc---cccCccCcEEEECCch
Confidence 3322211 012388999999999988852 1123568899998873
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=181.60 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=164.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|++++.++++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENS---MK--EKGFKARGLVLNISDIESIQNFFAEIK 77 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 5999999976421100000 00 013478899999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 78 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 146 (247)
T 3lyl_A 78 AENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA----------- 146 (247)
T ss_dssp HTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc-----------
Confidence 4799999999432 2345677999999999999998764 3556999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+..+......+........+ .....+.
T Consensus 147 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~~~~~ 213 (247)
T 3lyl_A 147 ----GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATK---------IPSGQIG 213 (247)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTT---------STTCCCB
T ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHHHHHHHhhc---------CCCCCCc
Confidence 1234578999999888888776543 58999999999999886554444333333322 2335688
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
+++|+|++++.++..- .....|+.+++.++..+
T Consensus 214 ~~~dva~~i~~l~s~~---~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 214 EPKDIAAAVAFLASEE---AKYITGQTLHVNGGMYM 246 (247)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTSSC
T ss_pred CHHHHHHHHHHHhCCC---cCCccCCEEEECCCEec
Confidence 9999999999887521 23457999999987543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=183.82 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=161.4
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.++|+++||||+ |+||++++++|+++| ++|++++|+..... ..+. +... .+++.++.+|++|++++.++++
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~-~~~~---l~~~--~~~~~~~~~D~~~~~~v~~~~~ 78 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRP-EAEK---LAEA--LGGALLFRADVTQDEELDALFA 78 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHT-CEEEEEESCGGGHH-HHHH---HHHH--TTCCEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHHHH-HHHH---HHHh--cCCcEEEECCCCCHHHHHHHHH
Confidence 456899999999 999999999999999 59999998753000 0000 1010 1247889999999999887776
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|+|||+||... ..++++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 79 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 152 (261)
T 2wyu_A 79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK------ 152 (261)
T ss_dssp HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS------
T ss_pred HHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC------
Confidence 6899999999432 234467799999999999999998762 24899999987652
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++|+.++++..... .+.+...+....
T Consensus 153 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------- 215 (261)
T 2wyu_A 153 ---------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTA-------- 215 (261)
T ss_dssp ---------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHS--------
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcC--------
Confidence 1123468999999999998887644 489999999999999854321 223322222211
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCH
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~ 263 (467)
....+.+++|+|++++.++... .....|+.|++.++...+.
T Consensus 216 -p~~~~~~~~dva~~v~~l~s~~---~~~~tG~~~~vdgG~~~~~ 256 (261)
T 2wyu_A 216 -PLRRNITQEEVGNLGLFLLSPL---ASGITGEVVYVDAGYHIMG 256 (261)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGBC
T ss_pred -CCCCCCCHHHHHHHHHHHcChh---hcCCCCCEEEECCCccccC
Confidence 1234678999999999888521 2345689999999855543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=180.96 Aligned_cols=222 Identities=13% Similarity=0.074 Sum_probs=158.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC-CCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..+|+++||||+|+||++++++|+++| ++|++++| +........+. +. ....++.++.+|++|++++.++++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~---l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEE---IK--KVGGEAIAVKGDVTVESDVINLVQS 78 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HH--HTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHHH---HH--hcCCceEEEECCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 59999998 43210000000 00 012457889999999999888776
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... ...+++..+++|+.++.++++++... + ..++|++||...+.
T Consensus 79 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-------- 150 (261)
T 1gee_A 79 AIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-------- 150 (261)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC--------
Confidence 6899999999432 22445678999999999988876643 4 67999999986651
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.++++...... +.......... .
T Consensus 151 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 214 (261)
T 1gee_A 151 -------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMI---------P 214 (261)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTC---------T
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcC---------C
Confidence 2234578999999999888776543 4899999999999988533211 12222222211 1
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
...+++++|+|++++.++... .....|+.+++.++..
T Consensus 215 ~~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 215 MGYIGEPEEIAAVAAWLASSE---ASYVTGITLFADGGMT 251 (261)
T ss_dssp TSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCcc---ccCCCCcEEEEcCCcc
Confidence 245889999999999987521 1245788999998743
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=182.41 Aligned_cols=230 Identities=10% Similarity=0.063 Sum_probs=155.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCc-cCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+... .....+. +.. ....++.++.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~ 77 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRAG---LAA-QHGVKVLYDGADLSKGEAVRGLVDNA 77 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHHH---HHH-HHTSCEEEECCCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHH---HHh-ccCCcEEEEECCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 599999997641 0000000 000 002468889999999999887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 78 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 147 (260)
T 1x1t_A 78 VRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV---------- 147 (260)
T ss_dssp HHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc----------
Confidence 6899999999432 2244677999999999999888753 4677999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHh--cCCCceEEe-cCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLA--KPGWTKFII-GSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~--~~g~~~~~~-g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++......+...... ......... ......
T Consensus 148 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 222 (260)
T 1x1t_A 148 -----ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPS 222 (260)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTT
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCC
Confidence 1134568999999999988876532 58999999999999885432211110000 000000000 111123
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+.+++|+|++++.++... .....|+.+++.++.
T Consensus 223 ~~~~~p~dva~~~~~l~s~~---~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 223 LQFVTPEQLGGTAVFLASDA---AAQITGTTVSVDGGW 257 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhChh---hcCCCCCEEEECCCc
Confidence 46889999999999887521 134678999998863
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=186.29 Aligned_cols=211 Identities=15% Similarity=0.051 Sum_probs=157.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|..... .....+.+|++|.+++.++++
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~----------------~~~~~~~~Dv~~~~~~~~~~~~~~ 89 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAG-ARVAVADRAVAGI----------------AADLHLPGDLREAAYADGLPGAVA 89 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECSSCCTTS----------------CCSEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH----------------HhhhccCcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999876410 112345789999988776654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 90 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------- 158 (266)
T 3uxy_A 90 AGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR----------- 158 (266)
T ss_dssp HHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB-----------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC-----------
Confidence 6899999999432 23456778999999999999998 455677999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-------HHHHHHhcCCCceEEecCC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-------PLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-------~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++...... ........ ..
T Consensus 159 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---------~~ 225 (266)
T 3uxy_A 159 ----PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELG---------RT 225 (266)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHH---------TT
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHH---------hc
Confidence 2234568999999999998877644 4899999999999876321100 11111111 22
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.....+.+++|+|++++.++... .....|+++++.++..+
T Consensus 226 ~p~~r~~~pedvA~~v~~L~s~~---~~~itG~~i~vdGG~~~ 265 (266)
T 3uxy_A 226 VPLGRIAEPEDIADVVLFLASDA---ARYLCGSLVEVNGGKAV 265 (266)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTCCC
T ss_pred CCCCCCcCHHHHHHHHHHHhCch---hcCCcCCEEEECcCEeC
Confidence 23457889999999999888621 23467999999998654
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=180.11 Aligned_cols=219 Identities=12% Similarity=0.046 Sum_probs=158.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~-~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|++ .| +.|.+.+|... .....+..+.+|++|++++.++++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~~---------------~~~~~~~~~~~Dv~~~~~v~~~~~~~ 66 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQS---------------FSAENLKFIKADLTKQQDITNVLDII 66 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSCC---------------CCCTTEEEEECCTTCHHHHHHHHHHT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEeccccc---------------cccccceEEecCcCCHHHHHHHHHHH
Confidence 578999999999999999999999 67 58999888654 112357899999999999998886
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|++||+||... +.++++..+++|+.++.++++++...-. .++|++||...+.
T Consensus 67 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 132 (244)
T 4e4y_A 67 KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI-------------- 132 (244)
T ss_dssp TTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC--------------
T ss_pred HhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc--------------
Confidence 6899999999432 2345677899999999999999887632 4899999987762
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCC--CceEEecCCCccccccc
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG--WTKFIIGSGENMSDFTY 226 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g--~~~~~~g~g~~~~~~i~ 226 (467)
+..+...|+.+|+..|.+.+.++. .+|+++++++||.+.++................ ..............+.+
T Consensus 133 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 211 (244)
T 4e4y_A 133 -AKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQ 211 (244)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBC
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcC
Confidence 123446899999999999888764 468999999999997764222111111000000 00000111223356889
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++|+|++++.++... .....|+.+++.++.
T Consensus 212 p~dvA~~v~~l~s~~---~~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 212 PQEIAELVIFLLSDK---SKFMTGGLIPIDGGY 241 (244)
T ss_dssp HHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred HHHHHHHHHHHhcCc---cccccCCeEeECCCc
Confidence 999999999988521 234678999998874
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=176.78 Aligned_cols=219 Identities=12% Similarity=0.094 Sum_probs=153.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC-CccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ-SLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|++ .... +. +.. ...++..+.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~---~~---~~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEAE---AA---IRN--LGRRVLTVKCDVSQPGDVEAFGKQ 75 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHHH---HH---HHH--TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCchhHHH---HH---HHh--cCCcEEEEEeecCCHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976 2100 00 110 12468889999999999887754
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++.++ +++.+..++|++||...+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 146 (249)
T 2ew8_A 76 VISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL--------- 146 (249)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc---------
Confidence 6899999999432 2234667899999998888887 4555678999999998762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEecCCCccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~-~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++... ...... ....... . ....
T Consensus 147 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~-~~~~~~~--~-----~~~~ 212 (249)
T 2ew8_A 147 ------KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAM-FDVLPNM--L-----QAIP 212 (249)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------CT--T-----SSSC
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccch-hhHHHHh--h-----CccC
Confidence 1134568999999999998887643 5899999999999887533 111000 0000000 0 1224
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 213 ~~~~p~dva~~~~~l~s~---~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 213 RLQVPLDLTGAAAFLASD---DASFITGQTLAVDGGM 246 (249)
T ss_dssp SCCCTHHHHHHHHHHTSG---GGTTCCSCEEEESSSC
T ss_pred CCCCHHHHHHHHHHHcCc---ccCCCCCcEEEECCCc
Confidence 578999999999998751 1234678999998863
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=182.12 Aligned_cols=216 Identities=16% Similarity=0.072 Sum_probs=158.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|..... .. ....++.++.+|++|++++.++++
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~----------~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAG-AQVVVLDIRGEDV----------VA-DLGDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCHHH----------HH-HTCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCchHHH----------HH-hcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999854310 00 113568999999999999888776
Q ss_pred ---CCCEEEEcccCC-----------CCCCChhhHHHhhHHHHHHHHHHHHhC------------CCCeEEEEcCccccc
Q 012270 84 ---GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACREC------------KVRRLVYNSTADVVF 137 (467)
Q Consensus 84 ---~~D~Vih~aa~~-----------~~~~~~~~~~~~nv~g~~~ll~aa~~~------------~v~r~v~~SS~~vyg 137 (467)
++|++||+||.. ...++++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tl3_A 76 TMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD 155 (257)
T ss_dssp HHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C
T ss_pred HhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC
Confidence 789999999942 344557889999999999999988753 234899999987762
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 012270 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (467)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+.................+.
T Consensus 156 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-- 218 (257)
T 3tl3_A 156 ---------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPH-- 218 (257)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTSSS--
T ss_pred ---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccHHHHHHHHhcCCC--
Confidence 1123468999999998888776543 58999999999998876543333333222222110
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
...+.+++|+|++++.++. .+...|+++++.++..++
T Consensus 219 ------~~r~~~p~dva~~v~~l~s-----~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 ------PSRLGNPDEYGALAVHIIE-----NPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp ------SCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTC---
T ss_pred ------CCCccCHHHHHHHHHHHhc-----CCCCCCCEEEECCCccCC
Confidence 1357889999999999997 467889999999885443
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=185.16 Aligned_cols=222 Identities=15% Similarity=0.098 Sum_probs=160.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||++++++|+++| ++|++++|........... .+. ....++..+.+|++|.+++.++++
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~D~~d~~~v~~~~~~~ 100 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAG-AKVAVNYASSAGAADEVVA--AIA--AAGGEAFAVKADVSQESEVEALFAAV 100 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHH--HHH--hcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999988843211000000 000 113468899999999999887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.|+.++++++. +.+..++|++||.+.+.
T Consensus 101 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 170 (269)
T 4dmm_A 101 IERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM---------- 170 (269)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC----------
Confidence 6899999999432 234567899999999999999874 34567999999987752
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++....... ....... ....+
T Consensus 171 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~---------p~~r~ 233 (269)
T 4dmm_A 171 -----GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELAA---EKLLEVI---------PLGRY 233 (269)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHHH---HHHGGGC---------TTSSC
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccccH---HHHHhcC---------CCCCC
Confidence 1134568999999888887776543 58999999999998886543221 1222211 23457
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.+++|+|++++.++... ......|+++++.++..+
T Consensus 234 ~~~~dvA~~v~~l~s~~--~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 234 GEAAEVAGVVRFLAADP--AAAYITGQVINIDGGLVM 268 (269)
T ss_dssp BCHHHHHHHHHHHHHCG--GGGGCCSCEEEESTTSCC
T ss_pred CCHHHHHHHHHHHhCCc--ccCCCcCCEEEECCCeec
Confidence 88999999999988720 012467999999987544
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=183.06 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=163.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|++++.++++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEGAEAVAAA---IR--QAGGKAIGLECNVTDEQHREAVIKAAL 84 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976421000000 00 113578899999999999887765
Q ss_pred ----CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 85 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------ 152 (256)
T 3gaf_A 85 DQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN------------ 152 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC------------
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC------------
Confidence 6899999999432 234567899999999999999874 44567999999987762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+.++..... .+......... .....+.
T Consensus 153 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------~p~~r~~ 220 (256)
T 3gaf_A 153 ---TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKH---------TPLGRLG 220 (256)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTT---------CTTSSCB
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhc---------CCCCCCC
Confidence 2234578999999999998887644 589999999999987632111 12222222222 2335678
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCH
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~ 263 (467)
+++|+|++++.++.. ......|+++++.++...++
T Consensus 221 ~~~dva~~~~~L~s~---~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 221 EAQDIANAALFLCSP---AAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSCCC-
T ss_pred CHHHHHHHHHHHcCC---cccCccCCEEEECCCccccC
Confidence 999999999998852 12346799999999876654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=182.53 Aligned_cols=211 Identities=12% Similarity=0.063 Sum_probs=157.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+|++|||||+|+||++++++|+++| ++|++++|+.... ...+..+.+|++|++++.++++
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~---------------~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYG-AKVVSVSLDEKSD---------------VNVSDHFKIDVTNEEEVKEAVEKT 75 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCC--C---------------TTSSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchhc---------------cCceeEEEecCCCHHHHHHHHHHH
Confidence 467899999999999999999999999 5999999876511 1256788999999999887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...|.
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 145 (269)
T 3vtz_A 76 TKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA---------- 145 (269)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc----------
Confidence 6899999999432 2234567889999999999988664 4567999999998873
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcH-----------HHHHHHhcCCCceEE
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPGWTKFI 214 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~-----------~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|+..|.+.+.++.+. ++++.+++||.+.++...... ........
T Consensus 146 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~------- 213 (269)
T 3vtz_A 146 -----ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWG------- 213 (269)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHH-------
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHH-------
Confidence 12345689999999999998876543 799999999999876321100 11111111
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.......+.+++|+|++++.++... .....|+++++.++.
T Consensus 214 --~~~p~~r~~~pedvA~~v~~L~s~~---~~~itG~~i~vdGG~ 253 (269)
T 3vtz_A 214 --RQHPMGRIGRPEEVAEVVAFLASDR---SSFITGACLTVDGGL 253 (269)
T ss_dssp --HHSTTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred --hcCCCCCCcCHHHHHHHHHHHhCCc---cCCCcCcEEEECCCc
Confidence 1123356788999999999888521 234679999999974
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=183.71 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=157.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ...++.++.+|++|.+++.++++.
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 106 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAG-ADVAIWYNSHPADEKAEHL---QKT--YGVHSKAYKCNISDPKSVEETISQQE 106 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHT-CEEEEEESSSCCHHHHHHH---HHH--HCSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCcceEEEeecCCHHHHHHHHHHHH
Confidence 56799999999999999999999999 5999999976411000000 000 124688999999999998887754
Q ss_pred -----CCEEEEcccCCCC---------CCChhhHHHhhHHH----HHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 85 -----ASTVFYVDATDLN---------TDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 85 -----~D~Vih~aa~~~~---------~~~~~~~~~~nv~g----~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
+|+|||+||.... .+++...+++|+.+ ++++++.+++.+.+++|++||...+...
T Consensus 107 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 179 (279)
T 3ctm_A 107 KDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN------- 179 (279)
T ss_dssp HHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC--------
T ss_pred HHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC-------
Confidence 8999999994322 12345688999999 5677777777788899999998765210
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..|.+++.++.+ .+ ++++++|+.+.++......+.......... ....
T Consensus 180 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------p~~~ 243 (279)
T 3ctm_A 180 ------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQLT---------PLGR 243 (279)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHHS---------TTCS
T ss_pred ------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccChHHHHHHHHhC---------CccC
Confidence 1234568999999999999887643 46 999999999988754322122222211111 1235
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++++|+|++++.++... .....|+.+++.++..
T Consensus 244 ~~~~~dvA~~~~~l~s~~---~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 244 EGLTQELVGGYLYLASNA---STFTTGSDVVIDGGYT 277 (279)
T ss_dssp CBCGGGTHHHHHHHHSGG---GTTCCSCEEEESTTCC
T ss_pred CcCHHHHHHHHHHHhCcc---ccCccCCEEEECCCee
Confidence 889999999999988621 1346789999998743
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=179.02 Aligned_cols=207 Identities=13% Similarity=-0.008 Sum_probs=146.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC--CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++||||+|+||++++++|+++| + +|++++|+.... +. +.+. ...++.++.+|++|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~----~~---l~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKA----TE---LKSI-KDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGC----HH---HHTC-CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHH----HH---HHhc-cCCceEEEEeecCCHHHHHHHHHH
Confidence 46799999999999999999999999 6 899999976521 00 1111 24578999999999999888876
Q ss_pred --------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----------C-----CCeEEEEcC
Q 012270 84 --------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----------K-----VRRLVYNST 132 (467)
Q Consensus 84 --------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----------~-----v~r~v~~SS 132 (467)
++|+|||+||... ...+++..+++|+.++.++++++... + ..++|++||
T Consensus 73 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 152 (250)
T 1yo6_A 73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred HHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEecc
Confidence 7999999999443 12345678999999999999887654 4 679999999
Q ss_pred ccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC---CceEEEEeCCCcccCCCCCcHHHHHHHhcCC
Q 012270 133 ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPG 209 (467)
Q Consensus 133 ~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g 209 (467)
...+.... .+.. +..+...|+.+|+..|.+++.++.+. |++++++||+.+.++....
T Consensus 153 ~~~~~~~~------~~~~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------ 212 (250)
T 1yo6_A 153 GLGSITDN------TSGS--AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------ 212 (250)
T ss_dssp GGGCSTTC------CSTT--SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------
T ss_pred CccccCCc------cccc--ccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC------------
Confidence 87763211 1111 22456789999999999998876543 8999999999987664211
Q ss_pred CceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 210 ~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
..+++++|+|++++.++... .....|+.+.+.+
T Consensus 213 ------------~~~~~~~~~a~~~~~~~~~~---~~~~~G~~~~~~g 245 (250)
T 1yo6_A 213 ------------NAALTVEQSTAELISSFNKL---DNSHNGRFFMRNL 245 (250)
T ss_dssp ------------------HHHHHHHHHHHTTC---CGGGTTCEEETTE
T ss_pred ------------CCCCCHHHHHHHHHHHHhcc---cccCCCeEEEECC
Confidence 13578999999999998731 1124565554433
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=180.33 Aligned_cols=212 Identities=13% Similarity=0.060 Sum_probs=155.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH-HHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|+++|+..|++++|+.... ..+. +.......++.++.+|++|+ +++.++++
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~--~~~~---l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT--ALAE---LKAINPKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH--HHHH---HHHHCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHH--HHHH---HHHhCCCceEEEEEEecCCChHHHHHHHHHH
Confidence 5789999999999999999999999942399999875310 0000 11111134688899999998 77776665
Q ss_pred -----CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCC-------CCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 -----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-------VRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~-------v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|+|||+||.. ..++++..+++|+.++.++++++...- ..++|++||...+.
T Consensus 79 ~~~~g~id~lv~~Ag~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 143 (254)
T 1sby_A 79 FDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-------------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS--------------
T ss_pred HHhcCCCCEEEECCccC-CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc--------------
Confidence 689999999964 346788999999999999999987531 35799999998762
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---H---HHHHHHhcCCCceEEecCCCccc
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---V---PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~---~---~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++..... . +.+ ..... ..
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~------------~~ 209 (254)
T 1sby_A 144 -AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRV-AELLL------------SH 209 (254)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTH-HHHHT------------TS
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHH-HHHHh------------cC
Confidence 1123568999999999999887754 589999999999987632110 0 000 00000 11
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+.+++|+|++++.+++ ....|+.|++.++
T Consensus 210 ~~~~~~dvA~~i~~~~~------~~~~G~~~~v~gG 239 (254)
T 1sby_A 210 PTQTSEQCGQNFVKAIE------ANKNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHH------HCCTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHHHH------cCCCCCEEEEeCC
Confidence 34489999999999886 3467889999987
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=188.09 Aligned_cols=224 Identities=11% Similarity=0.091 Sum_probs=158.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC---cCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. .....++.++.+|++|++++.++++
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 92 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADE---LQANLPPTKQARVIPIQCNIRNEEEVNNLVK 92 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence 45899999999999999999999999 5999999975411000000 000 0123578999999999999888775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC
Q 012270 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... ...+++..+++|+.++.++++++... +..++|++||.+.+
T Consensus 93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~--------- 163 (303)
T 1yxm_A 93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA--------- 163 (303)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT---------
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeeccc---------
Confidence 4899999999432 22345678999999999999997662 35689999998732
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC-CCcH---HHHHHHhcCCCceEEecCC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD-TQLV---PLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~-~~~~---~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..+.+.+.++.+ .|++++++||+.++|+.. .... +.+...... .
T Consensus 164 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~ 227 (303)
T 1yxm_A 164 -------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQ---------K 227 (303)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGG---------G
T ss_pred -------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHh---------c
Confidence 1123468999999999988877654 489999999999999842 1110 111111111 0
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
.....+.+++|+|++++.++... .....|+.+++.++...+
T Consensus 228 ~p~~~~~~~~dvA~~i~~l~~~~---~~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 228 IPAKRIGVPEEVSSVVCFLLSPA---ASFITGQSVDVDGGRSLY 268 (303)
T ss_dssp STTSSCBCTHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGC
T ss_pred CcccCCCCHHHHHHHHHHHhCcc---cccCCCcEEEECCCeecc
Confidence 12235889999999999988521 123678999999985443
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=179.56 Aligned_cols=216 Identities=17% Similarity=0.089 Sum_probs=157.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|++.... . +. ..+++..+.+|++|++++.++.+
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~----~---~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINESKLQ----E---LE---KYPGIQTRVLDVTKKKQIDQFANEVE 73 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHG----G---GG---GSTTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHH----H---HH---hccCceEEEeeCCCHHHHHHHHHHhC
Confidence 57899999999999999999999999 59999999764211 0 11 11268899999999999887654
Q ss_pred CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+...
T Consensus 74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------- 140 (246)
T 2ag5_A 74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG------------- 140 (246)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC-------------
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC-------------
Confidence 6899999999432 2244667899999999999998763 467799999998765211
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH------HHHHHHhcCCCceEEecCCCcccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~------~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+.+...|+.+|+..|.+.+.++.+ .|++++++||+.+++|.....+ ........... ....
T Consensus 141 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 210 (246)
T 2ag5_A 141 -VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ---------KTGR 210 (246)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC---------TTSS
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcC---------CCCC
Confidence 114568999999999998887643 4899999999999987422111 11111111111 1235
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+.+++|+|++++.++... .....|+.+++.++.
T Consensus 211 ~~~~~dvA~~v~~l~s~~---~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 211 FATAEEIAMLCVYLASDE---SAYVTGNPVIIDGGW 243 (246)
T ss_dssp CEEHHHHHHHHHHHHSGG---GTTCCSCEEEECTTG
T ss_pred CCCHHHHHHHHHHHhCcc---ccCCCCCEEEECCCc
Confidence 789999999999987521 234578999998863
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=184.32 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=162.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|++|||||+|+||++++++|+++| ++|++++|+.......... ... ....++.++.+|++|++++.++++
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQ--YVE--KEGVKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--TTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHH--HHH--hcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999876411000000 000 123578899999999999887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... ..++++..+++|+.|+.++++++... .-.++|++||...+..
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------- 189 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEG----------- 189 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHC-----------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCC-----------
Confidence 6899999999432 23456789999999999999999876 3359999999988731
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
..+...|+.+|+..|.+.+.++.+ .|+++.+++||.++++..... -....... ........+.
T Consensus 190 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~---------~~~~p~~r~~ 256 (291)
T 3ijr_A 190 ----NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQF---------GSNVPMQRPG 256 (291)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHHT---------TTTSTTSSCB
T ss_pred ----CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHHH---------HccCCCCCCc
Confidence 123568999999999998887644 489999999999988742110 01111111 1223345688
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++|+|++++.++..- .....|+.+++.++..
T Consensus 257 ~p~dvA~~v~~L~s~~---~~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 257 QPYELAPAYVYLASSD---SSYVTGQMIHVNGGVI 288 (291)
T ss_dssp CGGGTHHHHHHHHSGG---GTTCCSCEEEESSSCC
T ss_pred CHHHHHHHHHHHhCCc---cCCCcCCEEEECCCcc
Confidence 8999999999888521 2346799999998754
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=178.63 Aligned_cols=238 Identities=15% Similarity=0.067 Sum_probs=164.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC--CCCCCC-----cCCCCCeEEEEecCCCHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES--NSLLPD-----SLSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~-----~~~~~~v~~~~~Dl~d~~~l 78 (467)
..+++++||||+|+||++++++|+++| ++|++++|........... ...+.. .....++.++.+|++|++++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 356899999999999999999999999 5999999874311000000 000000 00135789999999999998
Q ss_pred HHHHh-------CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCC
Q 012270 79 KKVLE-------GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 79 ~~~~~-------~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~ 143 (467)
.++++ ++|++||+||... ..++++..+++|+.++.++++++... + -.++|++||...+...
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 165 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGV---- 165 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC----
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCC----
Confidence 88876 6899999999433 23557789999999999999987543 2 4589999998775211
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHH-HhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVN-LAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~-~~~~g~~~~~~g~g 218 (467)
.. +..+...|+.+|+..+.+.+.++.+ .|+++++++||.+.++...... ..+.. ...........++.
T Consensus 166 ---~~----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (278)
T 3sx2_A 166 ---GS----ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNA 238 (278)
T ss_dssp ---CC----SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTSCS
T ss_pred ---cc----CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhhhh
Confidence 00 1134467999999999988877643 5799999999999998755321 12221 11111111122233
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.. ..+++++|+|++++.++..- .....|+++++.++.
T Consensus 239 ~p-~~~~~p~dvA~~v~~l~s~~---~~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 239 MP-VEVLAPEDVANAVAWLVSDQ---ARYITGVTLPVDAGF 275 (278)
T ss_dssp SS-CSSBCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTT
T ss_pred cC-cCcCCHHHHHHHHHHHhCcc---cccccCCEEeECCCc
Confidence 33 67899999999999887521 234679999999874
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=176.68 Aligned_cols=210 Identities=14% Similarity=0.073 Sum_probs=152.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|++.. .. .+..+.+|++|++++.++++
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----------~~------~~~~~~~D~~~~~~~~~~~~~~~ 76 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGA----------PK------GLFGVEVDVTDSDAVDRAFTAVE 76 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCC----------CT------TSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHH----------HH------HhcCeeccCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 599999997641 11 12238899999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 77 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 145 (247)
T 1uzm_A 77 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW----------- 145 (247)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc-----------
Confidence 5899999999432 2345678999999999999998764 5678999999986652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++|+.+.++................ .....+.
T Consensus 146 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p~~~~~ 212 (247)
T 1uzm_A 146 ----GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQF---------IPAKRVG 212 (247)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGG---------CTTCSCB
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhc---------CCCCCCc
Confidence 1123568999999999888876543 58999999999997653111111111111111 1123578
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++|+|++++.++.. ......|+.+++.++..
T Consensus 213 ~~~dvA~~~~~l~s~---~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 213 TPAEVAGVVSFLASE---DASYISGAVIPVDGGMG 244 (247)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHcCc---cccCCcCCEEEECCCcc
Confidence 999999999988852 11345789999998754
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=179.59 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=155.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
|+|+++||||+|+||++++++|+++| ++|++++|+... .....+.+|++|.+++.++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~-----------------~~~~~~~~d~~d~~~v~~~~~~~~ 82 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKS-WNTISIDFRENP-----------------NADHSFTIKDSGEEEIKSVIEKIN 82 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCT-----------------TSSEEEECSCSSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCccc-----------------ccccceEEEeCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599999997651 112457889999999887775
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||... ..++++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 83 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (251)
T 3orf_A 83 SKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN------------ 150 (251)
T ss_dssp TTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------
T ss_pred HHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc------------
Confidence 3699999999421 123456789999999999999988752 24899999987762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+++.++.+ .|+++++++||.+.++. ....... .....+
T Consensus 151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~--------~~~~~~~---------~~~~~~ 210 (251)
T 3orf_A 151 ---RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT--------NRKYMSD---------ANFDDW 210 (251)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH--------HHHHCTT---------SCGGGS
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc--------hhhhccc---------cccccc
Confidence 2234568999999999999998766 57999999999886542 1111111 234578
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
++++|+|++++.++... ......|+.+++.+++..
T Consensus 211 ~~~~dva~~i~~l~~~~--~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTNS--DSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp BCHHHHHHHHHHHHHCG--GGCCCTTCEEEEEEETTE
T ss_pred CCHHHHHHHHHHHhcCc--cccCCcceEEEEecCCcc
Confidence 89999999999998720 124567899999887553
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.1e-21 Score=181.59 Aligned_cols=229 Identities=12% Similarity=0.029 Sum_probs=158.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|++.......+. +.. ...++..+.+|++|++++.++++
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKE---LRE--AGVEADGRTCDVRSVPEIEALVAAVV 94 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 5999999976411000000 000 12468889999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC------CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~------~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~--------- 165 (277)
T 2rhc_B 95 ERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ--------- 165 (277)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS---------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc---------
Confidence 6899999999432 12345779999999999999997765 567999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcC--CCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--GWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~--g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.+.++........+...... +............
T Consensus 166 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 239 (277)
T 2rhc_B 166 ------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPI 239 (277)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTT
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCCC
Confidence 1134568999999999988877533 5899999999999876422111100000000 0000000011123
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+++++|+|++++.++... .....|+.+++.++.
T Consensus 240 ~r~~~~~dvA~~v~~l~s~~---~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 240 GRYVQPSEVAEMVAYLIGPG---AAAVTAQALNVCGGL 274 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred CCCcCHHHHHHHHHHHhCch---hcCCCCcEEEECCCc
Confidence 46899999999999888521 124578999999873
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=180.99 Aligned_cols=224 Identities=13% Similarity=0.118 Sum_probs=161.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|++++.++++
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 77 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLE---IE--QFPGQILTVQMDVRNTDDIQKMIEQI 77 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HC--CSTTCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 5999999976421110000 11 113478899999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH-----HhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC-----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa-----~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... ..++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 78 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 148 (257)
T 3imf_A 78 DEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD--------- 148 (257)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc---------
Confidence 6899999999422 23456789999999999999988 344467999999987762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC----CCCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEecCCC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~----~~g~~~~ilRp~~i~G~~~~~~~---~~~~~~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|+..+.+.+.++. .+|+++++++||.+.++...... +.+...... ..
T Consensus 149 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~~ 213 (257)
T 3imf_A 149 ------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQ---------SV 213 (257)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHT---------TS
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHh---------cC
Confidence 123456899999999998887763 34899999999999988543211 001111111 12
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
....+.+++|+|++++.++... .....|+.+++.++..++
T Consensus 214 p~~r~~~pedvA~~v~~L~s~~---~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 214 PLGRLGTPEEIAGLAYYLCSDE---AAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTTTSC
T ss_pred CCCCCcCHHHHHHHHHHHcCch---hcCccCCEEEECCCcccC
Confidence 2345788999999999888521 234579999999986554
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-21 Score=179.19 Aligned_cols=217 Identities=14% Similarity=0.077 Sum_probs=155.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+...... ..... ..++.++.+|++|++++.++++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAA-------TAREL-GDAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHTT-GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCceeEEEecCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599999997641100 00001 2357889999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHH----HHHHHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~l----l~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++ +..+++.+..++|++||...+.
T Consensus 75 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 143 (254)
T 1hdc_A 75 EEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM----------- 143 (254)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc-----------
Confidence 7999999999432 2244677899999999854 4455556778999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++.. ..+ .... ............+.
T Consensus 144 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~----~~~----~~~~-~~~~~~~~p~~~~~ 210 (254)
T 1hdc_A 144 ----GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT----AET----GIRQ-GEGNYPNTPMGRVG 210 (254)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----HHH----TCCC-STTSCTTSTTSSCB
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc----ccc----chhH-HHHHHhcCCCCCCC
Confidence 1124568999999999988877643 589999999999987631 111 0000 00000111223467
Q ss_pred -chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 -YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 -~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++... .....|+.+++.++.
T Consensus 211 ~~~~dvA~~v~~l~s~~---~~~~tG~~~~vdgG~ 242 (254)
T 1hdc_A 211 NEPGEIAGAVVKLLSDT---SSYVTGAELAVDGGW 242 (254)
T ss_dssp -CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCch---hcCCCCCEEEECCCc
Confidence 9999999999988521 124578999999874
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=176.74 Aligned_cols=232 Identities=13% Similarity=0.019 Sum_probs=160.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC------CcCCCCCCC--cCCCCCeEEEEecCCCHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP------SESNSLLPD--SLSSGRAEYHQVDVRDISQ 77 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~------~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~ 77 (467)
.++++++||||+|+||++++++|+++| ++|++++|........ .+....... .....++..+.+|++|+++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 356899999999999999999999999 5999999853211000 000000000 0113568889999999999
Q ss_pred HHHHHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCcccccc
Q 012270 78 IKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFD 138 (467)
Q Consensus 78 l~~~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~ 138 (467)
+.++++ ++|++||+||... ..++++..+++|+.++.++++++.. .+ -.++|++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK- 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc-
Confidence 887765 6899999999432 3345677899999999999998753 23 46899999987762
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHH-hcCCCceE
Q 012270 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNL-AKPGWTKF 213 (467)
Q Consensus 139 ~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-~~~~~~~~-~~~g~~~~ 213 (467)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+.++.... ........ ........
T Consensus 171 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 236 (280)
T 3pgx_A 171 --------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFP 236 (280)
T ss_dssp --------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSC
T ss_pred --------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhh
Confidence 2234568999999999988887654 68999999999999986542 11111111 11111101
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....... .+.+++|+|++++.++..- .....|+++++.++
T Consensus 237 -~~~~~~~-r~~~p~dvA~~v~~L~s~~---~~~itG~~i~vdGG 276 (280)
T 3pgx_A 237 -PMPVQPN-GFMTADEVADVVAWLAGDG---SGTLTGTQIPVDKG 276 (280)
T ss_dssp -CBTTBCS-SCBCHHHHHHHHHHHHSGG---GTTCSSCEEEESTT
T ss_pred -hcccCCC-CCCCHHHHHHHHHHHhCcc---ccCCCCCEEEECCC
Confidence 1111222 4899999999999887521 23467899999886
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=179.95 Aligned_cols=246 Identities=15% Similarity=0.115 Sum_probs=166.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC--CCCCC-----cCCCCCeEEEEecCCCHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPD-----SLSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~-----~~~~~~v~~~~~Dl~d~~~l 78 (467)
.+++++|||||+|+||++++++|+++| ++|++++|............ ..+.. .....++..+.+|++|++++
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 356899999999999999999999999 59999998743211100000 00000 01235788999999999998
Q ss_pred HHHHh-------CCCEEEEcccCCC-----CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 79 KKVLE-------GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 79 ~~~~~-------~~D~Vih~aa~~~-----~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
.++++ ++|+|||+||... ..++++..+++|+.++.++++++... +-.++|++||...+.... ..
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--~~ 164 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAA--QP 164 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHH--CC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccc--cc
Confidence 87765 6899999999432 34557789999999999999999875 345899999988774221 11
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCC---Cc-----eE
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG---WT-----KF 213 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g---~~-----~~ 213 (467)
+..|.. +..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... +.. ...... .. ..
T Consensus 165 ~~~~~~--~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 240 (287)
T 3pxx_A 165 PGAGGP--QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSA-PMY-RQFRPDLEAPSRADALLA 240 (287)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSH-HHH-HHHCTTSSSCCHHHHHHH
T ss_pred cccccc--CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc-chh-hhhccccccchhHHHHhh
Confidence 223332 2234568999999999998887654 489999999999998865431 110 111100 00 00
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
..........+.+++|+|++++.++.. ......|+++++.++..+
T Consensus 241 ~~~~~~~~~~~~~p~dva~~v~fL~s~---~a~~itG~~i~vdGG~~~ 285 (287)
T 3pxx_A 241 FPAMQAMPTPYVEASDISNAVCFLASD---ESRYVTGLQFKVDAGAML 285 (287)
T ss_dssp GGGGCSSSCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred hhhhcccCCCCCCHHHHHhhHheecch---hhcCCCCceEeECchhhh
Confidence 001111225789999999999988851 023467999999998544
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.1e-21 Score=181.19 Aligned_cols=220 Identities=11% Similarity=0.019 Sum_probs=155.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---- 82 (467)
.+|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|++++.+++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 93 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEI---WR--EKGLNVEGSVCDLLSRTERDKLMQTVA 93 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999999 5999999976411000000 00 01346888999999999988776
Q ss_pred ----hCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 83 ----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 83 ----~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
.++|+|||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+..
T Consensus 94 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 164 (273)
T 1ae1_A 94 HVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA--------- 164 (273)
T ss_dssp HHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC---------
T ss_pred HHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCC---------
Confidence 35899999999432 223467788999999999999884 446679999999987631
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH------HHHHHhcCCCceEEecCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP------LLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~------~~~~~~~~g~~~~~~g~g 218 (467)
..+...|+.+|+..|.+.+.++.+ .|+++++++||.++++....... ..........
T Consensus 165 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------- 230 (273)
T 1ae1_A 165 ------LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT-------- 230 (273)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS--------
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcC--------
Confidence 123568999999999998877543 48999999999999885432111 1111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 231 -p~~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~ 267 (273)
T 1ae1_A 231 -PMGRAGKPQEVSALIAFLCFP---AASYITGQIIWADGGF 267 (273)
T ss_dssp -TTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred -CCCCCcCHHHHHHHHHHHhCc---cccCcCCCEEEECCCc
Confidence 123578899999999988751 1234578999999874
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=182.15 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=153.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+....... ... ...++..+.+|++|.+++.++++
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~-------~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGG-AKVVIVDRDKAGAERV-------AGE-IGDAALAVAADISKEADVDAAVEAAL 78 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH-------HHH-HCTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHH-------HHH-hCCceEEEEecCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976521100 000 13468899999999999887775
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhCC--------CCeEEEEcCccccccCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK--------VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~~--------v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|+|||+|+... ..++++..+++|+.++.++.+++...- ..++|++||...+.
T Consensus 79 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------ 152 (261)
T 3n74_A 79 SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR------ 152 (261)
T ss_dssp HHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS------
T ss_pred HhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC------
Confidence 6899999999532 234456789999999999988876441 34699999987652
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCc
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+......|+.+|+..+.+.+.++.+ .|+++++++|+.+.++............ ......+...
T Consensus 153 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~-----~~~~~~~~~~ 218 (261)
T 3n74_A 153 ---------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEE-----IRKKFRDSIP 218 (261)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------------------------CT
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHH-----HHHHHhhcCC
Confidence 2233467999999999998887644 5899999999999887543322111100 0111122234
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCH
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~ 263 (467)
...+++++|+|++++.++.. ......|+++++.++..++-
T Consensus 219 ~~~~~~~~dva~~~~~l~s~---~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 219 MGRLLKPDDLAEAAAFLCSP---QASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp TSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTTC--
T ss_pred cCCCcCHHHHHHHHHHHcCC---cccCcCCcEEEecCCcccCC
Confidence 45789999999999988752 12446899999999876653
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=176.18 Aligned_cols=215 Identities=13% Similarity=0.028 Sum_probs=156.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+..... +.....++..+.+|++|++++.++++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~----------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEEGPLR----------EAAEAVGAHPVVMDVADPASVERGFAEAL 72 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHH----------HHHHTTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----------HHHHHcCCEEEEecCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 59999999764110 00001137889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++.+++... +..++|++||...++
T Consensus 73 ~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------- 141 (245)
T 1uls_A 73 AHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG----------- 141 (245)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC-----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcC-----------
Confidence 4899999999432 22345678999999999998887653 567999999987331
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
..+...|+.+|+..+.+.+.++.+ .|+++++++||.+..+................. ....+.
T Consensus 142 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~~ 207 (245)
T 1uls_A 142 -----NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAAT---------PLGRAG 207 (245)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTC---------TTCSCB
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhC---------CCCCCc
Confidence 123468999999998888776533 589999999999988754332222222221111 112477
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++|+|++++.++... .....|+.+++.++..
T Consensus 208 ~~~dvA~~v~~l~s~~---~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 208 KPLEVAYAALFLLSDE---SSFITGQVLFVDGGRT 239 (245)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCch---hcCCcCCEEEECCCcc
Confidence 8999999999887521 1345789999988743
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=180.58 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=159.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+...... .... ...++..+.+|++|++++.++++
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVR-------VANE-IGSKAFGVRVDVSSAKDAESMVEKTT 96 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHH-HCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHH-hCCceEEEEecCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 599999997641100 0000 13468899999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 97 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 165 (277)
T 4dqx_A 97 AKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS----------- 165 (277)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS-----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc-----------
Confidence 6899999999432 2344677889999999999888753 4556999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE---ecCCCccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI---IGSGENMS 222 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~---~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+..+.. ...... ....... ........
T Consensus 166 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~----~~~~~~--~~~~~~~~~~~~~~~~~~ 235 (277)
T 4dqx_A 166 ----AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYF----TKIFAE--AKDPAKLRSDFNARAVMD 235 (277)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----HHHHHT--CSCHHHHHHHHHTTSTTC
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchh----hhhccc--ccchhHHHHHHHhcCccc
Confidence 2234578999999999998877643 489999999999976531 111100 0000000 11222345
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
.+.+++|+|++++.++..- .....|+++++.++...+
T Consensus 236 r~~~pedvA~~v~~L~s~~---~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 236 RMGTAEEIAEAMLFLASDR---SRFATGSILTVDGGSSIG 272 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESSSSSSC
T ss_pred CCcCHHHHHHHHHHHhCCc---cCCCcCCEEEECCchhhh
Confidence 6788999999999888521 233579999999986543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=182.03 Aligned_cols=221 Identities=14% Similarity=0.059 Sum_probs=160.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|+||++++++|+++| ++|++++|........ +. +. ....++..+.+|++|.+++.++.+
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~-~~---~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAG-AHVLAWGRTDGVKEVA-DE---IA--DGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTHHHHHH-HH---HH--TTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCHHHHHHHH-HH---HH--hcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999754310000 00 00 113468889999999998876654
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||... ..++++..+++|+.|+.++++++. +.+..++|++||...+.
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~------------ 170 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ------------ 170 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC------------
Confidence 6899999999432 234567899999999999999874 44667999999987762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++..... .+.......... ....+
T Consensus 171 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p~~r~ 238 (273)
T 3uf0_A 171 ---GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARI---------PAGRW 238 (273)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHS---------TTSSC
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcC---------CCCCC
Confidence 2234568999999999998887654 689999999999988753221 111111111111 22457
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.+++|+|++++.++... .....|+++++.++...
T Consensus 239 ~~pedva~~v~~L~s~~---a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 239 ATPEDMVGPAVFLASDA---ASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp BCGGGGHHHHHHHHSGG---GTTCCSCEEEESTTGGG
T ss_pred CCHHHHHHHHHHHhCch---hcCCcCCEEEECcCccC
Confidence 88999999999988521 23467999999987543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=184.66 Aligned_cols=225 Identities=16% Similarity=0.073 Sum_probs=159.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+....... .... ..++..+.+|++|++++.++++
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 97 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADAA-------ATKI-GCGAAACRVDVSDEQQIIAMVDAC 97 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHHH-------HHHH-CSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-------HHHc-CCcceEEEecCCCHHHHHHHHHHH
Confidence 356889999999999999999999999 5999999976421100 0001 3468899999999998887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... +.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 98 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------- 167 (277)
T 3gvc_A 98 VAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV---------- 167 (277)
T ss_dssp HHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc----------
Confidence 6899999999432 3345678999999999999888764 4566899999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC---CCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS---GENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~---g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++||.+++|... ..... ..+........ ....
T Consensus 168 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~----~~~~~-~~~~~~~~~~~~~~~~~~ 237 (277)
T 3gvc_A 168 -----AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQ----TAMAM-FDGALGAGGARSMIARLQ 237 (277)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----HHHTC-C------CCHHHHHHHHH
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHH----Hhhhc-chhhHHHHhhhhhhhccc
Confidence 2234568999999999998876543 6899999999999876321 11100 00000000000 0112
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
..+.+++|+|++++.++.. ......|+++++.++...+
T Consensus 238 ~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 238 GRMAAPEEMAGIVVFLLSD---DASMITGTTQIADGGTIAA 275 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGS
T ss_pred cCCCCHHHHHHHHHHHcCC---ccCCccCcEEEECCcchhc
Confidence 3578899999999998852 1234679999999985544
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=179.06 Aligned_cols=218 Identities=12% Similarity=0.063 Sum_probs=161.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+...... ..+.. ..+...+.+|++|+++++++++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQA-------ISDYL-GDNGKGMALNVTNPESIEAVLKAI 77 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHH-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-cccceEEEEeCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599999997642110 00000 1246789999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... ..++++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 147 (248)
T 3op4_A 78 TDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM---------- 147 (248)
T ss_dssp HHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC----------
Confidence 6899999999432 2345678999999999999998754 4567999999987662
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+......+......... .....+
T Consensus 148 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~p~~r~ 213 (248)
T 3op4_A 148 -----GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQ---------VPAGRL 213 (248)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHT---------CTTCSC
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhc---------CCCCCC
Confidence 2234578999999888888776543 58999999999998876543323222222222 123467
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+++|+|++++.++.. ......|+.+++.++.
T Consensus 214 ~~p~dva~~v~~L~s~---~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 214 GDPREIASAVAFLASP---EAAYITGETLHVNGGM 245 (248)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHcCC---ccCCccCcEEEECCCe
Confidence 8899999999988752 1234579999999874
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=176.48 Aligned_cols=212 Identities=11% Similarity=0.099 Sum_probs=154.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc-------EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
+|+++||||+|+||++++++|+++| + .|++++|+........+. +. ....++.++.+|++|++++.+
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G-~~~~~~~~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~v~~ 75 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAA-RHHPDFEPVLVLSSRTAADLEKISLE---CR--AEGALTDTITADISDMADVRR 75 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHT-TTCTTCCEEEEEEESCHHHHHHHHHH---HH--TTTCEEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhc-CcccccceEEEEEeCCHHHHHHHHHH---HH--ccCCeeeEEEecCCCHHHHHH
Confidence 5789999999999999999999999 5 899999975411000000 00 013468889999999999888
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCC
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~ 142 (467)
+++ ++|+|||+||... ...+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----- 150 (244)
T 2bd0_A 76 LTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK----- 150 (244)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----
T ss_pred HHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC-----
Confidence 876 6999999999432 2244677899999999999998753 4678999999998762
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|+..|.+++.++ ...|++++++||+.++++...... .. .
T Consensus 151 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---------~~--------~ 203 (244)
T 2bd0_A 151 ----------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD---------DE--------M 203 (244)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC---------ST--------T
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc---------cc--------c
Confidence 12345789999999999886654 346899999999999998643210 00 0
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
...+++++|+|++++.++... .....|+.+...+++.+
T Consensus 204 -~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~~~~~ 241 (244)
T 2bd0_A 204 -QALMMMPEDIAAPVVQAYLQP---SRTVVEEIILRPTSGDI 241 (244)
T ss_dssp -GGGSBCHHHHHHHHHHHHTSC---TTEEEEEEEEEETTCCC
T ss_pred -cccCCCHHHHHHHHHHHHhCC---ccccchheEEecccccc
Confidence 236899999999999988621 12234555555554433
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=181.28 Aligned_cols=228 Identities=15% Similarity=0.111 Sum_probs=165.1
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.....++|+++||||+|+||++++++|+++| ++|++++|+...... ..+.. ..++..+.+|++|++++.+
T Consensus 1 M~m~~l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~ 71 (255)
T 4eso_A 1 MVMGNYQGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNESNIAR-------IREEF-GPRVHALRSDIADLNEIAV 71 (255)
T ss_dssp ---CTTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-GGGEEEEECCTTCHHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-CCcceEEEccCCCHHHHHH
Confidence 33334467899999999999999999999999 599999997642100 00001 2468899999999998876
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCC
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
+++ ++|++||+||... ..++++..+++|+.++.++.+++... .-.++|++||.+.+.
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 144 (255)
T 4eso_A 72 LGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------- 144 (255)
T ss_dssp HHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS-------
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC-------
Confidence 654 5899999999432 33456789999999999999999865 224899999987762
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cH----HHHHHHhcCCCceEEe
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LV----PLLVNLAKPGWTKFII 215 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~--~~----~~~~~~~~~g~~~~~~ 215 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..++||.+..|.... .. ..+.......
T Consensus 145 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~------ 210 (255)
T 4eso_A 145 --------GHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNI------ 210 (255)
T ss_dssp --------BCTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHH------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhcc------
Confidence 1234578999999999988877654 48999999999999885321 11 1121111111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHH
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~e 265 (467)
.....+.+++|+|++++.++.. .....|+.+++.++...++.+
T Consensus 211 ---~p~~r~~~pedvA~~v~~L~s~----~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 211 ---TPMKRNGTADEVARAVLFLAFE----ATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp ---STTSSCBCHHHHHHHHHHHHHT----CTTCCSCEEEESTTTTTTBCC
T ss_pred ---CCCCCCcCHHHHHHHHHHHcCc----CcCccCCEEEECCCccccCcC
Confidence 1234567899999999988762 245679999999987665443
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=178.47 Aligned_cols=229 Identities=16% Similarity=0.118 Sum_probs=157.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCc--cCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
+|+++||||+|+||++++++|+++| ++|++++|+... .....+. +.. ...++.++.+|++|++++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~---~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQAAETIKL---IEA--ADQKAVFVGLDVTDKANFDSAIDEA 75 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECGGGHHHHHHHHHH---HHT--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHH---HHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5789999999999999999999999 599999997642 0000000 000 13468899999999999887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CC-CeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KV-RRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v-~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++++++... +. .++|++||...+.
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 146 (258)
T 3a28_C 76 AEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ--------- 146 (258)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc---------
Confidence 6999999999432 22446778999999999999988763 66 7999999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcC--CCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--GWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~--g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+..+........+...... .............
T Consensus 147 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 220 (258)
T 3a28_C 147 ------GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIAL 220 (258)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTT
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCC
Confidence 1123568999999999988877543 5899999999999665311101000000000 0000000011122
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
..+.+++|+|++++.++... .....|+.+++.++..
T Consensus 221 ~r~~~p~dvA~~v~~l~s~~---~~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 221 GRPSVPEDVAGLVSFLASEN---SNYVTGQVMLVDGGML 256 (258)
T ss_dssp SSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESSSSC
T ss_pred CCccCHHHHHHHHHHHhCcc---cCCCCCCEEEECCCEe
Confidence 35789999999999988521 1246789999988754
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=176.90 Aligned_cols=200 Identities=13% Similarity=0.042 Sum_probs=155.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+.. +|++|+++++++++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~-------------------------~D~~~~~~v~~~~~~~g 58 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEH-TIVHVASRQTG-------------------------LDISDEKSVYHYFETIG 58 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTT-EEEEEESGGGT-------------------------CCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEecCCcc-------------------------cCCCCHHHHHHHHHHhC
Confidence 56789999999999999999999999 59999987542 79999999988876
Q ss_pred CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 84 GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 84 ~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
++|++||+||... ..++++..+++|+.++.++++++...- -.++|++||...+. +
T Consensus 59 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~---------------~ 123 (223)
T 3uce_A 59 AFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK---------------V 123 (223)
T ss_dssp SEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS---------------C
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc---------------C
Confidence 5899999999431 234466789999999999999998762 23899999987762 2
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCC-ceEEEEeCCCcccCCCCCcHHH----HHHHhcCCCceEEecCCCccccccchh
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGDTQLVPL----LVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g-~~~~ilRp~~i~G~~~~~~~~~----~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
..+...|+.+|+..|.+.+.++.+.+ +++..++||.+.++........ +....... .....+.+++
T Consensus 124 ~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 194 (223)
T 3uce_A 124 VANTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSH---------LPVGKVGEAS 194 (223)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHH---------STTCSCBCHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhc---------CCCCCccCHH
Confidence 23456899999999999988876543 9999999999998754332222 22222221 1234677899
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
|+|++++.+++ .+...|+.+++.++..+
T Consensus 195 dvA~~~~~l~~-----~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 195 DIAMAYLFAIQ-----NSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHHH-----CTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHcc-----CCCCCCcEEEecCCeec
Confidence 99999999987 46678999999987543
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=174.60 Aligned_cols=210 Identities=14% Similarity=0.061 Sum_probs=153.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+... + ..+..+.+|++|++++.++++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~----------~------~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAG-DKVAITYRSGEP----------P------EGFLAVKCDITDTEQVEQAYKEIE 82 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSCC----------C------TTSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHh----------h------ccceEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599999986541 1 137889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 83 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------- 151 (253)
T 2nm0_A 83 ETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL----------- 151 (253)
T ss_dssp HHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC-----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC-----------
Confidence 3799999999432 3466788999999999999987764 3677999999986651
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++. ..|+++++++|+.+..+................ .....++
T Consensus 152 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~p~~~~~ 218 (253)
T 2nm0_A 152 ----GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQ---------VPLGRYA 218 (253)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------CHHHHHTT---------CTTCSCB
T ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHhc---------CCCCCCc
Confidence 112346899999999988887653 368999999999987664321111111111111 1223578
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+++|+|++++.++... .....|+.+.+.++..
T Consensus 219 ~p~dvA~~i~~l~s~~---~~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 219 RPEEIAATVRFLASDD---ASYITGAVIPVDGGLG 250 (253)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCcc---ccCCcCcEEEECCccc
Confidence 9999999999888521 1345789999988754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=181.69 Aligned_cols=230 Identities=17% Similarity=0.088 Sum_probs=165.2
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|......+|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|++++.+
T Consensus 1 M~m~~l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~v~~ 74 (280)
T 3tox_A 1 MVMSRLEGKIAIVTGASSGIGRAAALLFAREG-AKVVVTARNGNALAELTDE---IA--GGGGEAAALAGDVGDEALHEA 74 (280)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHH---HT--TTTCCEEECCCCTTCHHHHHH
T ss_pred CCccCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEECCCCCHHHHHH
Confidence 43334567899999999999999999999999 5999999976421100000 00 123568889999999999887
Q ss_pred HHh-------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCC
Q 012270 81 VLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSH 141 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~ 141 (467)
+++ ++|++||+||... +.++++..+++|+.|+.++.+++.. .+..++|++||...+..
T Consensus 75 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--- 151 (280)
T 3tox_A 75 LVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA--- 151 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB---
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC---
Confidence 765 6899999999431 2344678999999999999998754 35569999999876511
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc----HHHHHHHhcCCCceEE
Q 012270 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL----VPLLVNLAKPGWTKFI 214 (467)
Q Consensus 142 ~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~----~~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++..... .+..........
T Consensus 152 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---- 216 (280)
T 3tox_A 152 -----------GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH---- 216 (280)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS----
T ss_pred -----------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC----
Confidence 1234568999999999998887644 589999999999998854321 122222222222
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
....+.+++|+|++++.++..- .....|+++++.++..++
T Consensus 217 -----p~~r~~~pedvA~~v~~L~s~~---a~~itG~~i~vdGG~~~~ 256 (280)
T 3tox_A 217 -----ALKRIARPEEIAEAALYLASDG---ASFVTGAALLADGGASVT 256 (280)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGGC
T ss_pred -----ccCCCcCHHHHHHHHHHHhCcc---ccCCcCcEEEECCCcccc
Confidence 2346788999999999988521 234679999999985544
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-21 Score=183.43 Aligned_cols=224 Identities=12% Similarity=0.043 Sum_probs=160.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|++|||||+|+||++++++|+++| ++|++.+|....... +. .... ....++.++.+|++|.+++.++++
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 121 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEEEDA--QQ---VKALIEECGRKAVLLPGDLSDESFARSLVHK 121 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGHHHH--HH---HHHHHHHTTCCEEECCCCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchhHH--HH---HHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46799999999999999999999999 599999886321000 00 0000 113568889999999998877764
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhCCCC--eEEEEcCccccccCCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~--r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... ..++++..+++|+.|+.++++++...-.+ ++|++||...+.
T Consensus 122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~---------- 191 (294)
T 3r3s_A 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ---------- 191 (294)
T ss_dssp HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS----------
T ss_pred HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc----------
Confidence 6899999999432 22446789999999999999999876443 999999998873
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+.++.... ...................+
T Consensus 192 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~~p~~r~ 259 (294)
T 3r3s_A 192 -----PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQIS-------GGQTQDKIPQFGQQTPMKRA 259 (294)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHT-------TTSCGGGSTTTTTTSTTSSC
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccc-------cCCCHHHHHHHHhcCCCCCC
Confidence 1234568999999999998887644 48999999999998763100 00000000111122334567
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.+++|+|++++.++.. ......|+++++.++..+
T Consensus 260 ~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQ---ESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp BCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTCCC
T ss_pred cCHHHHHHHHHHHhCc---cccCCCCCEEEECCCccC
Confidence 8899999999988752 123467999999998654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=179.67 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=156.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.......++..+.+|++|++++.++++
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAA---VLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976411000000 0000113468889999999999888775
Q ss_pred ----CCCEEEEcccCCCC--------CCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~--------~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||.... .++++..+++|+.++.++.+++ ++.+..++|++||...+.
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 157 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR---------- 157 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc----------
Confidence 68999999994322 2346778999999988766554 455678999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--------cHHHHHHHhcCCCceEEec
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--------LVPLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~--------~~~~~~~~~~~g~~~~~~g 216 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.++++.... ...........
T Consensus 158 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------- 224 (267)
T 1iy8_A 158 -----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQ-------- 224 (267)
T ss_dssp -----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHT--------
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhc--------
Confidence 1134568999999999988876543 58999999999998763111 00000001111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
......+.+++|+|++++.++... .....|+.+++.++...
T Consensus 225 -~~p~~r~~~~~dvA~~v~~l~s~~---~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 225 -VNPSKRYGEAPEIAAVVAFLLSDD---ASYVNATVVPIDGGQSA 265 (267)
T ss_dssp -TCTTCSCBCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTTTT
T ss_pred -cCCCCCCcCHHHHHHHHHHHcCcc---ccCCCCCEEEECCCccc
Confidence 112245789999999999887521 12467899999987544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=183.23 Aligned_cols=222 Identities=13% Similarity=0.075 Sum_probs=160.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|.+++.++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAA---FK--QAGLEGRGAVLNVNDATAVDALVESTL 100 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HH--HHTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976411000000 00 012467889999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.|+.++++++.. .+-.++|++||...+.
T Consensus 101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 169 (270)
T 3ftp_A 101 KEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA----------- 169 (270)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC-----------
Confidence 6899999999432 2345678999999999999998753 3456899999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+................ .....+.
T Consensus 170 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~p~~r~~ 236 (270)
T 3ftp_A 170 ----GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQ---------IPLGRLG 236 (270)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTT---------CTTCSCB
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhc---------CCCCCCC
Confidence 1234568999999998888777643 58999999999997663221112222222222 2234678
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
+++|+|++++.++.. ......|+++++.++..+
T Consensus 237 ~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 237 SPEDIAHAVAFLASP---QAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSSC
T ss_pred CHHHHHHHHHHHhCC---CcCCccCcEEEECCCccc
Confidence 899999999988741 123467999999998554
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=179.76 Aligned_cols=198 Identities=15% Similarity=0.115 Sum_probs=147.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+.... +.....++..+.+|++|.+++.++++
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~-----------~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEG-HPLLLLARRVERL-----------KALNLPNTLCAQVDVTDKYTFDTAITRAE 82 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCHHHH-----------HTTCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH-----------HHhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976411 11123478899999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.|+.++++++. +.+..++|++||...+.
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------- 151 (266)
T 3p19_A 83 KIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK----------- 151 (266)
T ss_dssp HHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------
T ss_pred HHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC-----------
Confidence 6899999999432 224456789999999999777664 45678999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+.++....... .......... .....+
T Consensus 152 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--------~~~~r~ 219 (266)
T 3p19_A 152 ----TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR--------VDMGGV 219 (266)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH--------HHTTCC
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc--------ccccCC
Confidence 1234568999999999888877644 58999999999998875332111 1111111000 012357
Q ss_pred cchhHHHHHHHHHHH
Q 012270 225 TYVENVAHAHVCAAE 239 (467)
Q Consensus 225 i~v~Dva~a~~~al~ 239 (467)
++++|+|++++.++.
T Consensus 220 ~~pedvA~av~~l~~ 234 (266)
T 3p19_A 220 LAADDVARAVLFAYQ 234 (266)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 889999999999998
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=178.69 Aligned_cols=221 Identities=15% Similarity=0.087 Sum_probs=157.3
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGf-iG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+++++||||+|+ ||++++++|+++| ++|++++|+........+. +. .....++.++.+|++|++++.++++
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~-~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGETRDQ---LA-DLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH-TTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHH---HH-hcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 4679999999985 9999999999999 5999999976421100000 10 1123578999999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 166 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR--------- 166 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC---------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC---------
Confidence 5799999999432 23446778999999999999988764 456899999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+++.++.+ .|+++.+++||.+..+...... ..... .........
T Consensus 167 ------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~---------~~~~~~~~~ 231 (266)
T 3o38_A 167 ------AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLD---------RLASDEAFG 231 (266)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--------------------------CCTTS
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHHHHH---------HHHhcCCcC
Confidence 2235578999999999998877644 6899999999999877533211 11111 111223345
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+.+++|+|++++.++... .....|+++++.++.
T Consensus 232 r~~~~~dva~~i~~l~s~~---~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 232 RAAEPWEVAATIAFLASDY---SSYMTGEVVSVSSQR 265 (266)
T ss_dssp SCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESSCC
T ss_pred CCCCHHHHHHHHHHHcCcc---ccCccCCEEEEcCCc
Confidence 7889999999999988621 234679999998863
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=181.73 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=161.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........++ +. ....++.++.+|++|++++.++++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVERLEDVAKQ---VT--DTGRRALSVGTDITDDAQVAHLVDETM 83 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976411000000 00 113578899999999999887775
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... +.++++..+++|+.++.++++++... + .++|++||...+.
T Consensus 84 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 152 (264)
T 3ucx_A 84 KAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRH---------- 152 (264)
T ss_dssp HHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGC----------
T ss_pred HHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhcc----------
Confidence 5899999998421 22456778999999999999987643 3 6999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----------HHHHHhcCCCceE
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----------LLVNLAKPGWTKF 213 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-----------~~~~~~~~g~~~~ 213 (467)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.++++....... .+.....
T Consensus 153 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------ 221 (264)
T 3ucx_A 153 -----SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA------ 221 (264)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH------
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHh------
Confidence 2234568999999999998887654 68999999999998875322211 1122222
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+......+.+++|+|++++.++... .....|+++++.++..
T Consensus 222 ---~~~p~~r~~~p~dvA~~v~~L~s~~---~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 222 ---AGSDLKRLPTEDEVASAILFMASDL---ASGITGQALDVNCGEY 262 (264)
T ss_dssp ---TTSSSSSCCBHHHHHHHHHHHHSGG---GTTCCSCEEEESTTSS
T ss_pred ---ccCCcccCCCHHHHHHHHHHHcCcc---ccCCCCCEEEECCCcc
Confidence 2233456889999999999887521 2346799999998754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-21 Score=181.54 Aligned_cols=220 Identities=14% Similarity=0.056 Sum_probs=150.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++++++||||+|+||++++++|+++| ++|+++ .|+........+. +. ....++.++.+|++|.+++.++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQG-WRVGVNYAANREAADAVVAA---IT--ESGGEAVAIPGDVGNAADIAAMFSAV 98 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HH--HTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCChhHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999 588776 5543210000000 00 113468899999999999887765
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC-------CCCeEEEEcCccccccCCCCC
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~-------~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|+|||+||... +.++++..+++|+.++.++++++... +..++|++||.+.+...
T Consensus 99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 174 (272)
T 4e3z_A 99 DRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS---- 174 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC----
T ss_pred HHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC----
Confidence 6899999999432 23446789999999999999887654 34589999998776311
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~ 219 (467)
......|+.+|+..|.+++.++.+ .|+++++++||.+.++.... ..+....... ...
T Consensus 175 ----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~---------~~~ 235 (272)
T 4e3z_A 175 ----------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMA---------PSV 235 (272)
T ss_dssp ----------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------------CC
T ss_pred ----------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHHh---------hcC
Confidence 113357999999999988877643 48999999999999875332 1111111111 112
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+.+++|+|++++.++... .....|+.|++.++
T Consensus 236 ~~~~~~~~edvA~~i~~l~s~~---~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 236 PMQRAGMPEEVADAILYLLSPS---ASYVTGSILNVSGG 271 (272)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTT
T ss_pred CcCCCcCHHHHHHHHHHHhCCc---cccccCCEEeecCC
Confidence 3345778999999999988521 23467899999886
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=181.57 Aligned_cols=217 Identities=14% Similarity=0.105 Sum_probs=155.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| +.|++.+|+...... ... ....++..+.+|++|++++.++++
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQG-AIVGLHGTREDKLKE-------IAA-DLGKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH-HHCSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHH-HhCCceEEEEeecCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 599999987642100 000 013468899999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~----------- 165 (266)
T 3grp_A 97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV----------- 165 (266)
T ss_dssp HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC---------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC-----------
Confidence 6899999999432 234567889999999777766654 45667999999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++......+.......... ....+.
T Consensus 166 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~r~~ 232 (266)
T 3grp_A 166 ----GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMI---------PMKRMG 232 (266)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTC---------TTCSCB
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhcC---------CCCCCc
Confidence 1124568999999988888776643 589999999999987643222233333333322 234677
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++..- .....|+++++.++.
T Consensus 233 ~~edvA~~v~~L~s~~---~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 233 IGEEIAFATVYLASDE---AAYLTGQTLHINGGM 263 (266)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred CHHHHHHHHHHHhCcc---ccCccCCEEEECCCe
Confidence 8999999999887521 234679999998873
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=180.22 Aligned_cols=221 Identities=13% Similarity=0.075 Sum_probs=156.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +. ...++.++.+|++|++++.++++
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAG-ARVFICARDAEACADTATR---LS---AYGDCQAIPADLSSEAGARRLAQALG 100 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHH---HT---TSSCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH---hcCceEEEEeeCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976421000000 11 11268888999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCC----CeEEEEcCccccccCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKV----RRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v----~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+. +++|++||...+..
T Consensus 101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~------ 174 (276)
T 2b4q_A 101 ELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA------ 174 (276)
T ss_dssp HHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC------
T ss_pred HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC------
Confidence 6899999999432 2344678999999999888887653 343 79999999877621
Q ss_pred CCCCCcccCCCCCC-hHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCc
Q 012270 145 NGDETLTCCWKFQD-LMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 145 ~~~E~~p~~~~~~~-~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
..... .|+.+|+..|.+.+.++.+ .|+++++++|+.+..+................. ...
T Consensus 175 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~-------~~p 238 (276)
T 2b4q_A 175 ---------MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSA-------SIP 238 (276)
T ss_dssp ---------CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHH-------TST
T ss_pred ---------CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchhHHHHHHhhc-------CCC
Confidence 11234 8999999999998887643 589999999999987753221111111111100 011
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+.+++|+|++++.++... .....|+.+++.++.
T Consensus 239 ~~r~~~p~dvA~~v~~l~s~~---~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 239 MGRWGRPEEMAALAISLAGTA---GAYMTGNVIPIDGGF 274 (276)
T ss_dssp TSSCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTT
T ss_pred CCCcCCHHHHHHHHHHHhCcc---ccCCCCCEEEeCCCc
Confidence 235789999999999988521 124678999998864
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=178.09 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=158.9
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+|+++||||+ |+||++++++|+++| ++|++++|+.... ...+. +... .++..++.+|++|++++.++++
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~---l~~~--~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLK-GRVEE---FAAQ--LGSDIVLQCDVAEDASIDTMFAE 80 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTTTH-HHHHH---HHHH--TTCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEcCcHHHH-HHHHH---HHHh--cCCcEEEEccCCCHHHHHHHHHH
Confidence 45789999999 999999999999999 5999999875200 00000 0000 1234788999999999888776
Q ss_pred ------CCCEEEEcccCCC------------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCC
Q 012270 84 ------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 ------~~D~Vih~aa~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|+|||+||... ..++++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 81 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 154 (265)
T 1qsg_A 81 LGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER------ 154 (265)
T ss_dssp HHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------
T ss_pred HHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc------
Confidence 5799999999432 223467799999999999999998752 24899999987652
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.++++.... ..+.+......+.+
T Consensus 155 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p------- 218 (265)
T 1qsg_A 155 ---------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP------- 218 (265)
T ss_dssp ---------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST-------
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCC-------
Confidence 1123568999999999998877543 58999999999999986432 12233322222111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
...+.+++|+|++++.++... .....|+.|++.++...
T Consensus 219 --~~~~~~~~dva~~v~~l~s~~---~~~~tG~~~~vdgG~~~ 256 (265)
T 1qsg_A 219 --IRRTVTIEDVGNSAAFLCSDL---SAGISGEVVHVDGGFSI 256 (265)
T ss_dssp --TSSCCCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTGGG
T ss_pred --CCCCCCHHHHHHHHHHHhCch---hcCccCCEEEECCCcCC
Confidence 234778999999999887521 23457889999997543
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=175.14 Aligned_cols=212 Identities=16% Similarity=0.125 Sum_probs=154.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+|+++||||+|+||++++++|+++| ++|++++|++.. ..+.. ++..+.+|++| +++.++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G-~~V~~~~r~~~~----------~~~~~---~~~~~~~D~~~-~~~~~~~~~~~~ 66 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG-YRVAIASRNPEE----------AAQSL---GAVPLPTDLEK-DDPKGLVKRALE 66 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHH----------HHHHH---TCEEEECCTTT-SCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----------HHHhh---CcEEEecCCch-HHHHHHHHHHHH
Confidence 5789999999999999999999999 599999997652 00111 37788999999 76665543
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+...
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 136 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG---------- 136 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC----------
Confidence 6999999999432 224467899999999999988874 4467899999999877311
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+.+.++.+ .|++++++||+.+.++...... +.+........ ....+
T Consensus 137 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------p~~~~ 204 (239)
T 2ekp_A 137 ---GPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARI---------PMGRW 204 (239)
T ss_dssp ---TTSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTC---------TTSSC
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcC---------CCCCC
Confidence 1134568999999999988877643 4899999999999877432110 11222222211 12357
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+++|+|++++.++.. ......|+.+++.++.
T Consensus 205 ~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGD---EAEYLTGQAVAVDGGF 236 (239)
T ss_dssp BCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHcCc---hhcCCCCCEEEECCCc
Confidence 8999999999988752 1234578899998863
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-21 Score=182.10 Aligned_cols=223 Identities=14% Similarity=0.113 Sum_probs=149.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||+++++.|+++| ++|++++|........... .+. ....++.++.+|++|++++.++++
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASG-FDIAITGIGDAEGVAPVIA--ELS--GLGARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCHHHHHHHHH--HHH--HTTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHH--HHH--hcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999998643211000000 000 113578999999999998887775
Q ss_pred ----CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC----C---CCeEEEEcCccccccCCCCC
Q 012270 84 ----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC----K---VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 ----~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~----~---v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|+|||+||... ..++++..+++|+.++.++++++... + ..++|++||...+.
T Consensus 103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------ 176 (280)
T 4da9_A 103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM------ 176 (280)
T ss_dssp HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----------
T ss_pred HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc------
Confidence 6899999999521 33456788999999999998887654 2 45899999987752
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCc
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+......+........+ ...
T Consensus 177 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~--------~~p 239 (280)
T 4da9_A 177 ---------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESG--------LVP 239 (280)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhhc--------CCC
Confidence 1234468999999999988877643 68999999999998875443222211111111 122
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
...+.+++|+|++++.++.. ......|+++++.++..
T Consensus 240 ~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 240 MRRWGEPEDIGNIVAGLAGG---QFGFATGSVIQADGGLS 276 (280)
T ss_dssp --CCBCHHHHHHHHHHHHTS---TTGGGTTCEEEESTTCC
T ss_pred cCCcCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCcc
Confidence 34678899999999988851 02336799999998743
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=176.48 Aligned_cols=212 Identities=13% Similarity=0.091 Sum_probs=150.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCC-CHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~~ 84 (467)
..+|+++||||+|+||++++++|+++| ++|++++|++.. ..+ . .++..+ +|+. +.+++.+.+.+
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~----------~~~-~--~~~~~~-~D~~~~~~~~~~~~~~ 81 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNEEL----------LKR-S--GHRYVV-CDLRKDLDLLFEKVKE 81 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHH-T--CSEEEE-CCTTTCHHHHHHHSCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHH----------HHh-h--CCeEEE-eeHHHHHHHHHHHhcC
Confidence 457899999999999999999999999 599999997631 111 1 246667 9993 33444444448
Q ss_pred CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHH----HHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~----aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
+|+|||+||... ..++++..+++|+.++.++.+ .+++.+.+++|++||...|. +
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------~ 146 (249)
T 1o5i_A 82 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS---------------P 146 (249)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------C
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC---------------C
Confidence 999999999432 223457789999999776654 45556778999999998873 1
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHH-HhcCCCceEEecCCCccccccchhH
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN-LAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~-~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
..+...|+.+|+..+.+.+.++.+ .|++++++|||.+.++......+.... ..... .....+++++|
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~p~~~~~~~~d 217 (249)
T 1o5i_A 147 IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQ---------IPMRRMAKPEE 217 (249)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTT---------STTSSCBCHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchhhHHHHHHhc---------CCCCCCcCHHH
Confidence 134568999999999988876543 689999999999998853211111111 11111 12246889999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+|++++.++... .....|+.|++.++.
T Consensus 218 vA~~i~~l~s~~---~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 218 IASVVAFLCSEK---ASYLTGQTIVVDGGL 244 (249)
T ss_dssp HHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred HHHHHHHHcCcc---ccCCCCCEEEECCCc
Confidence 999999887521 123568999999874
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=180.18 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=164.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||+++++.|+++| ++|++++|+........+. +.... ...++.++.+|++|++++.++++
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 100 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQ---ILKAGVPAEKINAVVADVTEASGQDDIINTT 100 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976411000000 00000 01168899999999999887765
Q ss_pred -----CCCEEEEcccCCCC---------CCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~---------~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||.... .++++..+++|+.++.++++++... + .++|++||...+...
T Consensus 101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~------ 173 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA------ 173 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC------
T ss_pred HHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC------
Confidence 68999999994321 2345679999999999999887653 4 799999998775210
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--H-------HHHHHHhcCCCceE
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--V-------PLLVNLAKPGWTKF 213 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~--~-------~~~~~~~~~g~~~~ 213 (467)
..+...|+.+|+..|.+.+.++. ..|++++++|||.+.++..... . ..........
T Consensus 174 --------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---- 241 (297)
T 1xhl_A 174 --------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC---- 241 (297)
T ss_dssp --------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT----
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhc----
Confidence 02346899999999999887763 3689999999999988742111 0 0111111111
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHH
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~ 273 (467)
.....+.+++|+|++++.++.... .....|+.+++.++....+.+.+..+.++
T Consensus 242 -----~p~~r~~~pedvA~~v~~l~s~~~--~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 242 -----IPVGHCGKPEEIANIIVFLADRNL--SSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp -----CTTSSCBCHHHHHHHHHHHHCHHH--HTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCCcc--cCCccCcEEEECCCccccccccccchhhh
Confidence 122457899999999998875200 12467899999998766665554444443
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=174.25 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=155.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC-CCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++| +........+. +.. ...++..+.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQG-ANVVVNYAGNEQKANEVVDE---IKK--LGSDAIAVRADVANAEDVTNMVKQT 76 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHH---HHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 59999988 43210000000 000 13468889999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 147 (246)
T 2uvd_A 77 VDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG--------- 147 (246)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC---------
Confidence 6999999999432 224467799999999777766654 456789999999876521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
..+...|+.+|...+.+.+.++. ..|+++++++||.+.++................. ....+
T Consensus 148 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------p~~~~ 212 (246)
T 2uvd_A 148 ------NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLI---------PAAQF 212 (246)
T ss_dssp ------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHTC---------TTCSC
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHHHHHHhcC---------CCCCC
Confidence 12346899999999888776653 2589999999999988753321111111111111 12358
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
++++|+|++++.++.. ......|+.+++.++.
T Consensus 213 ~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 213 GEAQDIANAVTFFASD---QSKYITGQTLNVDGGM 244 (246)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHcCc---hhcCCCCCEEEECcCc
Confidence 8999999999988852 0123578999998864
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=182.20 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=157.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+++++|||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|++++.++++
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDG---LR--AAGHDVDGSSCDVTSTDEVHAAVAAAV 96 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--TTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976421100000 00 113568899999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh------CCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE------CKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~------~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 97 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~--------- 167 (279)
T 3sju_A 97 ERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ--------- 167 (279)
T ss_dssp HHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS---------
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc---------
Confidence 5899999999432 2244567899999999999998765 3567999999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-----------HHHHHHHhcCCCce
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPGWTK 212 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-----------~~~~~~~~~~g~~~ 212 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++..... ..........
T Consensus 168 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 237 (279)
T 3sju_A 168 ------GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA---- 237 (279)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT----
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh----
Confidence 2234568999999999888877644 589999999999976532110 1111122221
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
......+.+++|+|++++.++.. ......|+++++.++.
T Consensus 238 -----~~p~~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 238 -----KIPLGRYSTPEEVAGLVGYLVTD---AAASITAQALNVCGGL 276 (279)
T ss_dssp -----TCTTSSCBCHHHHHHHHHHHTSS---GGGGCCSCEEEESTTC
T ss_pred -----cCCCCCCCCHHHHHHHHHHHhCc---cccCcCCcEEEECCCc
Confidence 22335678899999999988751 1234689999999874
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-21 Score=185.98 Aligned_cols=241 Identities=19% Similarity=0.165 Sum_probs=169.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCC---CCc--CCCCCeEEEEecCCCHHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL---PDS--LSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~---~~~--~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
.+++++||||+|+||+++++.|+++| ++|++++|+.............. ... ....++..+.+|++|++++.++
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 45789999999999999999999999 59999998732111000000000 000 0134678899999999998877
Q ss_pred Hh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCC----------CeEEEEcCccccc
Q 012270 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV----------RRLVYNSTADVVF 137 (467)
Q Consensus 82 ~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v----------~r~v~~SS~~vyg 137 (467)
++ ++|+|||+||... ..++++..+++|+.++.++++++...-. .++|++||...+.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 184 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ 184 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence 75 6899999999432 2345678999999999999998764311 4899999987762
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 012270 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (467)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++|| +..+..........
T Consensus 185 ---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~----------- 237 (322)
T 3qlj_A 185 ---------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMM----------- 237 (322)
T ss_dssp ---------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-------------
T ss_pred ---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhh-----------
Confidence 1234568999999999998887654 68999999999 65543322111000
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC-----------------cCHHHHHHHHHHHcCCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP-----------------IKFWDFLSIILEGLGYQ 277 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~-----------------~s~~el~~~i~~~~g~~ 277 (467)
........++.++|+|.+++.++..- .....|+.+++.++.. +++.|+++.+.+.+|.+
T Consensus 238 -~~~~~~~~~~~pedva~~v~~L~s~~---~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~ 313 (322)
T 3qlj_A 238 -ATQDQDFDAMAPENVSPLVVWLGSAE---ARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKA 313 (322)
T ss_dssp -------CCTTCGGGTHHHHHHHTSGG---GGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHS
T ss_pred -hccccccCCCCHHHHHHHHHHHhCcc---ccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhcc
Confidence 01122345678999999999887521 2345799999998753 37899999999998865
Q ss_pred CC
Q 012270 278 RP 279 (467)
Q Consensus 278 ~~ 279 (467)
.+
T Consensus 314 ~~ 315 (322)
T 3qlj_A 314 RP 315 (322)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=172.86 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=157.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++..+.+|++|++++.++++
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQK---LTE-KYGVETMAFRCDVSNYEEVKKLLEAV 93 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH-hcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999975411000000 000 012467889999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccc-cccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADV-VFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~v-yg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.|+.++++++. +.+.+++|++||..+ + .
T Consensus 94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--~------- 164 (267)
T 1vl8_A 94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE--V------- 164 (267)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC--C-------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc--c-------
Confidence 6899999999432 123456789999999999988774 456789999999863 2 0
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+++.++.+ .|+++++++||.+..+...... +.......... ..
T Consensus 165 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p~ 229 (267)
T 1vl8_A 165 ------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRI---------PL 229 (267)
T ss_dssp ------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTC---------TT
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhC---------CC
Confidence 1234568999999999998887643 5899999999999877432211 11111111111 12
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..+.+++|+|++++.++... .....|+.+++.++.
T Consensus 230 ~~~~~p~dvA~~v~~l~s~~---~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 230 GRTGVPEDLKGVAVFLASEE---AKYVTGQIIFVDGGW 264 (267)
T ss_dssp SSCBCGGGGHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCcc---ccCCcCCeEEECCCC
Confidence 35788999999999988521 134578899998863
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-21 Score=179.66 Aligned_cols=221 Identities=11% Similarity=0.087 Sum_probs=159.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++++++||||+|+||++++++|+++| ++|++. +|+........+. +. ....++..+.+|++|++++.++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENG-YNIVINYARSKKAALETAEE---IE--KLGVKVLVVKANVGQPAKIKEMFQQI 76 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HH--TTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 588886 7765311000000 00 113478899999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 146 (258)
T 3oid_A 77 DETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR---------- 146 (258)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC----------
Confidence 4799999998322 234456789999999999998884 44567999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+...... ..+........ ...
T Consensus 147 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p~~ 212 (258)
T 3oid_A 147 -----YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNT---------PAG 212 (258)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHC---------TTS
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcC---------CCC
Confidence 2234578999999999998887654 4899999999999887533221 12222222211 234
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+.+++|+|++++.++.. ......|+++++.++..
T Consensus 213 r~~~~~dva~~v~~L~s~---~~~~itG~~i~vdGG~~ 247 (258)
T 3oid_A 213 RMVEIKDMVDTVEFLVSS---KADMIRGQTIIVDGGRS 247 (258)
T ss_dssp SCBCHHHHHHHHHHHTSS---TTTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCc---ccCCccCCEEEECCCcc
Confidence 678899999999988751 12346799999999843
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=179.53 Aligned_cols=222 Identities=14% Similarity=0.037 Sum_probs=159.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC-cCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++++|||||+|+||++++++|+++| +.|+++++........ . ... .....++..+.+|++|.+++.++++
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G-~~v~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDG-FRVVAGCGPNSPRRVK--W---LEDQKALGFDFYASEGNVGDWDSTKQAFDK 84 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTT-EEEEEEECTTCSSHHH--H---HHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHH--H---HHHHHhcCCeeEEEecCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 5898888433211000 0 000 0113568899999999999888775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 155 (256)
T 3ezl_A 85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK--------- 155 (256)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG---------
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc---------
Confidence 5799999999432 224467799999999888877764 45667999999987762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+......+.....+.... ....
T Consensus 156 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~~~ 220 (256)
T 3ezl_A 156 ------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATI---------PVRR 220 (256)
T ss_dssp ------SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHS---------TTSS
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHHHHHHHhcC---------CCCC
Confidence 2234578999999999888776643 589999999999987643333333433333222 2245
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+.+++|+|++++.++.. ......|+++++.++..
T Consensus 221 ~~~~~dva~~~~~l~s~---~~~~~tG~~i~vdgG~~ 254 (256)
T 3ezl_A 221 LGSPDEIGSIVAWLASE---ESGFSTGADFSLNGGLH 254 (256)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSC
T ss_pred CcCHHHHHHHHHHHhCC---cccCCcCcEEEECCCEe
Confidence 77899999999988752 12446799999998754
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=174.20 Aligned_cols=188 Identities=14% Similarity=-0.008 Sum_probs=134.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++|+||||+|+||++++++|+++| ++|++++|++..... +.... .++..+.+|++|.+++.++++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 73 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRLQA-------LAAEL--EGALPLPGDVREEGDWARAVAAME 73 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHS--TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh--hhceEEEecCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999 599999997541100 00001 267889999999998887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.+++++ +++.+.+++|++||...+.
T Consensus 74 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 142 (234)
T 2ehd_A 74 EAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN----------- 142 (234)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS-----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC-----------
Confidence 6899999999432 2234577899999999755554 4566788999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++.+ .|++++++|||.+..+.... . . . . ..++
T Consensus 143 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~-----~-~---------~-~~~~ 198 (234)
T 2ehd_A 143 ----PFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----T-----P-G---------Q-AWKL 198 (234)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------------------------------------C
T ss_pred ----CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----c-----c-c---------c-cCCC
Confidence 1234568999999998887766532 58999999999887653211 0 0 0 0 1157
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
+++|+|++++.++.
T Consensus 199 ~~~dvA~~~~~l~~ 212 (234)
T 2ehd_A 199 KPEDVAQAVLFALE 212 (234)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhC
Confidence 89999999999987
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=178.05 Aligned_cols=231 Identities=12% Similarity=0.006 Sum_probs=154.7
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|+.....+|+++||||+|+||++++++|+++| ++|+++++........... .+. ....++..+.+|++|++++.+
T Consensus 1 M~~~~l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dv~~~~~v~~ 75 (259)
T 3edm_A 1 MSLQRFTNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYNGAAEGAATAVA--EIE--KLGRSALAIKADLTNAAEVEA 75 (259)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSSCHHHHHHHH--HHH--TTTSCCEEEECCTTCHHHHHH
T ss_pred CCccCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHH--HHH--hcCCceEEEEcCCCCHHHHHH
Confidence 54445567899999999999999999999999 5898884433211000000 000 113468899999999999888
Q ss_pred HHh-------CCCEEEEcccCC-C-------CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCccccccCCCCC
Q 012270 81 VLE-------GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~-~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~~vyg~~~~~~ 143 (467)
+++ ++|++||+||.. . ..++++..+++|+.|+.++.+++...-. .++|++||...+..
T Consensus 76 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 150 (259)
T 3edm_A 76 AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG----- 150 (259)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC-----
T ss_pred HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC-----
Confidence 775 689999999833 1 2233577899999999999999987633 38999999877511
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCc
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+..+...|+.+|+..+.+.+.++.+. ++++..+.||.+..+...... +..... ......
T Consensus 151 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~~~---------~~~~~p 212 (259)
T 3edm_A 151 ---------GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVRER---------VAGATS 212 (259)
T ss_dssp ---------CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-----------------------------
T ss_pred ---------CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccChHHHHH---------HHhcCC
Confidence 12345689999999999988776432 399999999999876533221 111111 112223
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
...+.+++|+|++++.++..- .....|+.+++.++...+
T Consensus 213 ~~r~~~pedva~~v~~L~s~~---~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 213 LKREGSSEDVAGLVAFLASDD---AAYVTGACYDINGGVLFS 251 (259)
T ss_dssp --CCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESBCSSBC
T ss_pred CCCCcCHHHHHHHHHHHcCcc---ccCccCCEEEECCCcCCC
Confidence 456788999999999887521 234579999999975444
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=177.50 Aligned_cols=228 Identities=17% Similarity=0.135 Sum_probs=155.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+|+++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|++++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASE---IN--QAGGHAVAVKVDVSDRDQVFAAVEQARK 75 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 5999999976411000000 00 012468889999999999888876
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++.+++... + ..++|++||...+.
T Consensus 76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 144 (256)
T 1geg_A 76 TLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------- 144 (256)
T ss_dssp HTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC-----------
Confidence 6999999998432 22345678999999999888877653 4 57999999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc--CCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK--PGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~--~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++........+..... ................
T Consensus 145 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 220 (256)
T 1geg_A 145 ----GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGR 220 (256)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCS
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCCC
Confidence 1123468999999999988877543 589999999999987632111100000000 0000000001112235
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+.+++|+|++++.++... .....|+.+++.++.
T Consensus 221 ~~~p~dvA~~v~~l~s~~---~~~~tG~~i~vdGG~ 253 (256)
T 1geg_A 221 LSEPEDVAACVSYLASPD---SDYMTGQSLLIDGGM 253 (256)
T ss_dssp CBCHHHHHHHHHHHHSGG---GTTCCSCEEEESSSS
T ss_pred CcCHHHHHHHHHHHhCcc---ccCCCCCEEEeCCCc
Confidence 889999999999887521 124578999998874
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=172.47 Aligned_cols=203 Identities=14% Similarity=0.015 Sum_probs=151.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|++... ......+.+|++|++++.++++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~---------------~~~~~~~~~D~~~~~~~~~~~~~~~ 65 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQ---------------ADSNILVDGNKNWTEQEQSILEQTA 65 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTT---------------SSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecCcccc---------------ccccEEEeCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999 5999999976510 0135677899999998887765
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++.+++... .-.++|++||...+.
T Consensus 66 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 135 (236)
T 1ooe_A 66 SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------- 135 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------
Confidence 6899999999432 12345678999999999999998764 224899999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC-----CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+.+.++.+. |++++++||+.+.++. . ...... ....
T Consensus 136 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~----~----~~~~~~---------~~~~ 193 (236)
T 1ooe_A 136 -----PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM----N----RKWMPN---------ADHS 193 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH----H----HHHSTT---------CCGG
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc----h----hhcCCC---------cccc
Confidence 12345689999999999999887553 5999999999987652 1 111111 1123
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.++..+|+|++++..+.. .......|+.+++.++.
T Consensus 194 ~~~~~~dvA~~i~~~l~s--~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 194 SWTPLSFISEHLLKWTTE--TSSRPSSGALLKITTEN 228 (236)
T ss_dssp GCBCHHHHHHHHHHHHHC--GGGCCCTTCEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHcC--CCcccccccEEEEecCC
Confidence 567789999999866631 01234568899888764
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=177.67 Aligned_cols=221 Identities=12% Similarity=0.001 Sum_probs=157.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|........... .+. ....++.++.+|++|.+++.++++
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMG-LKVWINYRSNAEVADALKN--ELE--EKGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHH--hcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 5999999854311000000 000 113478899999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 103 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 171 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER----------- 171 (271)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------
T ss_pred HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC-----------
Confidence 6899999999432 2245678999999999998887754 3567999999987752
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+++.++.+ .|+++.+++||.+..+............ .........+.
T Consensus 172 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~---------~~~~~~~~~~~ 238 (271)
T 4iin_A 172 ----GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKAD---------YVKNIPLNRLG 238 (271)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------------CGGGCTTCSCB
T ss_pred ----CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHHHHHH---------HHhcCCcCCCc
Confidence 2234578999999999998887654 6899999999999877543322211111 11122335688
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+++|+|++++.++... .....|+.+++.++.
T Consensus 239 ~p~dvA~~i~~l~s~~---~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 239 SAKEVAEAVAFLLSDH---SSYITGETLKVNGGL 269 (271)
T ss_dssp CHHHHHHHHHHHHSGG---GTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCCC---cCCCcCCEEEeCCCe
Confidence 9999999999988521 234679999999874
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=178.97 Aligned_cols=225 Identities=11% Similarity=0.028 Sum_probs=158.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........+. +.... ...++.++.+|++|++++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQI---ILKSGVSEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHcCCCCcceEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976421000000 00000 01168899999999999887765
Q ss_pred ------CCCEEEEcccCCCC-----------CCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCC
Q 012270 84 ------GASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 84 ------~~D~Vih~aa~~~~-----------~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~ 142 (467)
++|+|||+||.... .++++..+++|+.++.++++++... + .++|++||...+...
T Consensus 80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--- 155 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA--- 155 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC---
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC---
Confidence 58999999994321 1335778999999999999988753 4 799999998776210
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--H-------HHHHHHhcCCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--V-------PLLVNLAKPGW 210 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~--~-------~~~~~~~~~g~ 210 (467)
..+...|+.+|+..|.+.+.++. .+|+++++++||.+.++..... . ..+.......
T Consensus 156 -----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (280)
T 1xkq_A 156 -----------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC- 223 (280)
T ss_dssp -----------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT-
T ss_pred -----------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC-
Confidence 02346899999999999888763 3689999999999998742211 0 1111221111
Q ss_pred ceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 211 ~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.....+.+++|+|++++.++.... .....|+.+++.++..
T Consensus 224 --------~p~~~~~~pedvA~~v~~l~s~~~--~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 224 --------IPIGAAGKPEHIANIILFLADRNL--SFYILGQSIVADGGTS 263 (280)
T ss_dssp --------CTTSSCBCHHHHHHHHHHHHCHHH--HTTCCSCEEEESTTGG
T ss_pred --------CCCCCCCCHHHHHHHHHHhcCccc--ccCccCCeEEECCCcc
Confidence 123458899999999998875200 1236789999998743
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=179.97 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=127.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++||||+|+||++++++|+++| ++|++.+|+.........+ .+... ....++..+.+|++|++++.++++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G-~~V~~~~r~~~~r~~~~~~--~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAG-HRVYASMRDIVGRNASNVE--AIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCTTTTTHHHHH--HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEecCcccccCHHHHH--HHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 46799999999999999999999999 5999988864210000000 00000 013568999999999999988876
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..+++...+++|+.|+.++++++ ++.+..++|++||.+.++.
T Consensus 81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~-------- 152 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG-------- 152 (324)
T ss_dssp HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC--------
Confidence 7999999999432 23445678999999999999998 5667789999999877521
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG 194 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~ 194 (467)
+......|+.||...|.+.+.++.+ .|+++++++||.+.++.
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 ------TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 1123467999999999998887654 68999999999998653
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-20 Score=174.84 Aligned_cols=219 Identities=14% Similarity=0.047 Sum_probs=157.3
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+|+++||||+ |+||+++++.|+++| ++|++++|+.... ...+. +... .+++.++.+|++|++++.++++
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~~~-~~~~~---l~~~--~~~~~~~~~Dl~~~~~v~~~~~~ 92 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREG-AQLAFTYATPKLE-KRVRE---IAKG--FGSDLVVKCDVSLDEDIKNLKKF 92 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEESSGGGH-HHHHH---HHHH--TTCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCCHHHH-HHHHH---HHHh--cCCeEEEEcCCCCHHHHHHHHHH
Confidence 35789999999 999999999999999 5999999875300 00000 1000 1246789999999999887775
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhCC---CCeEEEEcCccccccCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK---VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~~---v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|+|||+||... ..++++..+++|+.|+.++++++...- -.++|++||...+.
T Consensus 93 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------ 166 (285)
T 2p91_A 93 LEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK------ 166 (285)
T ss_dssp HHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS------
T ss_pred HHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc------
Confidence 5899999999532 123456799999999999999998763 26999999987652
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.++++..... .+.+........+
T Consensus 167 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p------- 230 (285)
T 2p91_A 167 ---------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNP------- 230 (285)
T ss_dssp ---------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHST-------
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCC-------
Confidence 1123468999999999998877643 589999999999999864321 2223222222111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+.+++|+|++++.++... .....|+.|++.++.
T Consensus 231 --~~~~~~~~dva~~~~~l~s~~---~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 231 --FGKPITIEDVGDTAVFLCSDW---ARAITGEVVHVDNGY 266 (285)
T ss_dssp --TSSCCCHHHHHHHHHHHTSGG---GTTCCSCEEEESTTG
T ss_pred --CCCCcCHHHHHHHHHHHcCCc---ccCCCCCEEEECCCc
Confidence 124678999999999887521 234568899999873
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=177.21 Aligned_cols=219 Identities=16% Similarity=0.101 Sum_probs=159.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+....... .+.. ..++..+.+|++|++++.++++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 74 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEA-------VAAL-EAEAIAVVADVSDPKAVEAVFAEA 74 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH-------HHTC-CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-------HHHh-cCceEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976421000 0001 1468889999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+||... ..++++..+++|+.++.++++++...- ..++|++||...+ +.
T Consensus 75 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~--~~--------- 143 (263)
T 2a4k_A 75 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL--GA--------- 143 (263)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC--CH---------
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc--CC---------
Confidence 4799999999432 123456789999999999999987652 3599999999776 11
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
.+...|+.+|+..+.+.+.++. ..|+++++++||.+.++......+.......... ....+.+
T Consensus 144 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~~~ 209 (263)
T 2a4k_A 144 -----FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGAS---------PLGRAGR 209 (263)
T ss_dssp -----HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTS---------TTCSCBC
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcC---------CCCCCcC
Confidence 1346899999988888776653 3689999999999998754332222222222211 1234788
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
++|+|++++.++... .....|+.+++.++...
T Consensus 210 p~dvA~~v~~l~s~~---~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 210 PEEVAQAALFLLSEE---SAYITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHHSGG---GTTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHHHhCcc---ccCCcCCEEEECCCccc
Confidence 999999999987521 12467899999987543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=184.23 Aligned_cols=219 Identities=18% Similarity=0.073 Sum_probs=140.4
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|+.....++++|||||+|+||++++++|+++| +.|++++|+........+. +.......++.++.+|++|.+++.+
T Consensus 1 M~m~~l~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 1 MSLKDFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALAT---LEAEGSGPEVMGVQLDVASREGFKM 76 (319)
T ss_dssp --CCCCTTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHTCGGGEEEEECCTTCHHHHHH
T ss_pred CCccCCCCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCCeEEEEECCCCCHHHHHH
Confidence 44444467899999999999999999999999 5999999976421000000 0111112368899999999999888
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCC----------CCeEEEEcCcccc
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK----------VRRLVYNSTADVV 136 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~----------v~r~v~~SS~~vy 136 (467)
+++ ++|+|||+||... ..++++..+++|+.|+.++++++.... -.++|++||...+
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~ 156 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAF 156 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGT
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccc
Confidence 875 4699999999432 224567799999999999999877542 4579999999876
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHH----hhcCCCCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCC
Q 012270 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL----FANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGW 210 (467)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~----~~~~~~g~~~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~ 210 (467)
.. ......|+.||...+.+.+ ++.+ .|+++++++||.|.++.... ..+..+.......
T Consensus 157 ~~---------------~~~~~~Y~aSKaal~~~~~~la~e~~~-~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 220 (319)
T 3ioy_A 157 LA---------------AGSPGIYNTTKFAVRGLSESLHYSLLK-YEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPV 220 (319)
T ss_dssp CC---------------CSSSHHHHHHHHHHHHHHHHHHHHHGG-GTCEEEEECCCCBC---------------------
T ss_pred cC---------------CCCCHHHHHHHHHHHHHHHHHHHHhhh-cCCEEEEEEcCeEccCcccccccCchhhcccccch
Confidence 31 1234689999995555544 4443 58999999999998874321 1111111000000
Q ss_pred ceEEecCCCccc-cccchhHHHHHHHHHHH
Q 012270 211 TKFIIGSGENMS-DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 211 ~~~~~g~g~~~~-~~i~v~Dva~a~~~al~ 239 (467)
.......-.... ..++++|+|++++.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~pe~vA~~~~~al~ 250 (319)
T 3ioy_A 221 DKTAVERLAGVHEFGMEPDVIGARVIEAMK 250 (319)
T ss_dssp --------CCGGGSSBCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 000000101111 23799999999999998
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=178.15 Aligned_cols=225 Identities=14% Similarity=0.060 Sum_probs=159.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| +.|+++++........... .......++.++.+|++|.+++.++++
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 98 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAG-MAVAVSHSERNDHVSTWLM----HERDAGRDFKAYAVDVADFESCERCAEKVL 98 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEECSCHHHHHHHHH----HHHTTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHH----HHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999988544311000000 000123578999999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 167 (269)
T 3gk3_A 99 ADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR----------- 167 (269)
T ss_dssp HHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------
T ss_pred HHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc-----------
Confidence 6899999999432 2344677899999999999988754 4567999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+..+............ ..........+.
T Consensus 168 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~--------~~~~~~~~~~~~ 235 (269)
T 3gk3_A 168 ----GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLEA--------KILPQIPVGRLG 235 (269)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------C--------CSGGGCTTSSCB
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHHHH--------HhhhcCCcCCcc
Confidence 2234578999999988888776543 5899999999999887654332221110 011112334677
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
+++|+|++++.++.. ......|+++++.++..++
T Consensus 236 ~p~dvA~~v~~L~s~---~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 236 RPDEVAALIAFLCSD---DAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp CHHHHHHHHHHHTST---TCTTCCSCEEEESTTSCCC
T ss_pred CHHHHHHHHHHHhCC---CcCCeeCcEEEECCCEeCc
Confidence 899999999988752 1234679999999986543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=174.33 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|++..... .... ..++.++.+|++|++++.++++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~ 76 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRA-------LEQE--LPGAVFILCDVTQEDDVKTLVSET 76 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHH--CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHH--hcCCeEEEcCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 599999997641100 0000 1247889999999999887765
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 77 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------- 146 (270)
T 1yde_A 77 IRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------- 146 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccC----------
Confidence 6899999999432 12335778999999999999988642 247999999986542
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc------HHHHHHHhcCCCceEEecCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL------VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~------~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..|.+.+.++.+ +|++++++|||.++++..... ...........
T Consensus 147 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--------- 212 (270)
T 1yde_A 147 -----GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLA--------- 212 (270)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHT---------
T ss_pred -----CCCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhc---------
Confidence 1123468999999999998887633 689999999999988731100 00000000000
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHH
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~ 264 (467)
.....+..++|+|++++.++.. .....|+.+++.++......
T Consensus 213 ~p~~r~~~p~dva~~v~~L~s~----~~~itG~~i~vdGG~~~~~~ 254 (270)
T 1yde_A 213 QPLGRMGQPAEVGAAAVFLASE----ANFCTGIELLVTGGAELGYG 254 (270)
T ss_dssp STTSSCBCHHHHHHHHHHHHHH----CTTCCSCEEEESTTTTSCC-
T ss_pred CCCCCCcCHHHHHHHHHHHccc----CCCcCCCEEEECCCeecccC
Confidence 1123467899999999988762 24567899999998665543
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=172.53 Aligned_cols=206 Identities=14% Similarity=0.047 Sum_probs=151.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
.++|+++||||+|+||++++++|+++|. ++|++++|+..... . +.+. ....++.++.+|++|.+++.+++
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~----~---~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 91 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK----E---LEDLAKNHSNIHILEIDLRNFDAYDKLV 91 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH----H---HHHHHHHCTTEEEEECCTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH----H---HHHhhccCCceEEEEecCCChHHHHHHH
Confidence 3578999999999999999999999992 39999999765210 0 0000 01347899999999999988887
Q ss_pred h---------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----------C-----CCeEEEE
Q 012270 83 E---------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----------K-----VRRLVYN 130 (467)
Q Consensus 83 ~---------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----------~-----v~r~v~~ 130 (467)
+ ++|+|||+||... ...+++..+++|+.++.++++++... + ..++|++
T Consensus 92 ~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~i 171 (267)
T 1sny_A 92 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINM 171 (267)
T ss_dssp HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEE
T ss_pred HHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEE
Confidence 6 7999999999543 12345678999999999999988654 2 4689999
Q ss_pred cCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc
Q 012270 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK 207 (467)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~ 207 (467)
||...+.... +..+...|+.+|+..|.+++.++.+ .|++++++||+.+..+....
T Consensus 172 sS~~~~~~~~------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------- 229 (267)
T 1sny_A 172 SSILGSIQGN------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS---------- 229 (267)
T ss_dssp CCGGGCSTTC------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT----------
T ss_pred ecccccccCC------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC----------
Confidence 9998763211 1124568999999999998887654 58999999999997653211
Q ss_pred CCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 208 ~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
..++.++|+|+.++.++... .....|+.+++.+
T Consensus 230 --------------~~~~~~~~~a~~~~~~~~~~---~~~~~G~~~~~~g 262 (267)
T 1sny_A 230 --------------SAPLDVPTSTGQIVQTISKL---GEKQNGGFVNYDG 262 (267)
T ss_dssp --------------TCSBCHHHHHHHHHHHHHHC---CGGGTTCEECTTS
T ss_pred --------------CCCCCHHHHHHHHHHHHHhc---CcCCCCcEEccCC
Confidence 12467899999999998742 1235665554433
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=176.26 Aligned_cols=220 Identities=15% Similarity=0.090 Sum_probs=154.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+...... ..+.. ..++.++.+|++|++++.++++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 74 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQ-------LAAEL-GERSMFVRHDVSSEADWTLVMAAV 74 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHH-------HHHHH-CTTEEEECCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHc-CCceEEEEccCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599999997641100 00001 2468889999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++.++ +++.+ .++|++||...+.
T Consensus 75 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 143 (253)
T 1hxh_A 75 QRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWL---------- 143 (253)
T ss_dssp HHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcC----------
Confidence 4799999999432 2244677899999987766654 44556 8999999998762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---C--CceEEEEeCCCcccCCCCCcH-HHHHHH-hcCCCceEEecCCCc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---D--GLLTCALRPSNVFGPGDTQLV-PLLVNL-AKPGWTKFIIGSGEN 220 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~--g~~~~ilRp~~i~G~~~~~~~-~~~~~~-~~~g~~~~~~g~g~~ 220 (467)
+..+...|+.+|+..|.+.+.++.+ . |++++++||+.++++...... +..... ..... ....
T Consensus 144 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------~~~p 212 (253)
T 1hxh_A 144 -----PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDP------KLNR 212 (253)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBT------TTBT
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhh------ccCc
Confidence 1134568999999999998887644 2 899999999999887421100 000000 11100 0112
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+.+++|+|++++.++... .....|+.+++.++.
T Consensus 213 ~~~~~~~~dvA~~~~~l~s~~---~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 213 AGRAYMPERIAQLVLFLASDE---SSVMSGSELHADNSI 248 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGG---GTTCCSCEEEESSSC
T ss_pred cCCCCCHHHHHHHHHHHcCcc---ccCCCCcEEEECCCc
Confidence 235789999999999988621 123578999998874
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=175.51 Aligned_cols=218 Identities=16% Similarity=0.065 Sum_probs=157.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC-CCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++++++||||+|+||++++++|+++| ++|+++.+ +........+. +. ....++.++.+|++|++++.++++
T Consensus 25 ~~k~vlVTGas~gIG~~la~~l~~~G-~~v~i~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 98 (267)
T 4iiu_A 25 MSRSVLVTGASKGIGRAIARQLAADG-FNIGVHYHRDAAGAQETLNA---IV--ANGGNGRLLSFDVANREQCREVLEHE 98 (267)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHH---HH--hcCCceEEEEecCCCHHHHHHHHHHH
Confidence 56789999999999999999999999 58876554 33210000000 00 113578999999999999887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH-----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~-----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 169 (267)
T 4iiu_A 99 IAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM--------- 169 (267)
T ss_dssp HHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH---------
T ss_pred HHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc---------
Confidence 6899999999432 234567899999999999999874 45567999999987762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++..... +.......... ....
T Consensus 170 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~---------p~~~ 233 (267)
T 4iiu_A 170 ------GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-ESALKEAMSMI---------PMKR 233 (267)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-HHHHHHHHHTC---------TTCS
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-HHHHHHHHhcC---------CCCC
Confidence 2234578999999888777666533 489999999999998865433 33333332222 1235
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+.+++|+|++++.++... .....|+++++.++
T Consensus 234 ~~~~edva~~~~~L~s~~---~~~itG~~i~vdGG 265 (267)
T 4iiu_A 234 MGQAEEVAGLASYLMSDI---AGYVTRQVISINGG 265 (267)
T ss_dssp CBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCCc---ccCccCCEEEeCCC
Confidence 778999999999887521 23467999999886
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=179.23 Aligned_cols=230 Identities=12% Similarity=0.112 Sum_probs=160.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........++ +........+..+.+|++|++++.++++
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g 84 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREENVNETIKE---IRAQYPDAILQPVVADLGTEQGCQDVIEKYP 84 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HHHHCTTCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHhhCCCceEEEEecCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 5999999976421100000 1111113457789999999999988876
Q ss_pred CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++|++||+||... ..++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 149 (267)
T 3t4x_A 85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM--------------- 149 (267)
T ss_dssp CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc---------------
Confidence 6899999999432 224456789999999877766654 45667999999987762
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE----------ecCCC
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI----------IGSGE 219 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~----------~g~g~ 219 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..++||.+..+. ...+......+..... .....
T Consensus 150 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (267)
T 3t4x_A 150 PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEG----VETMLNSLYPNEQLTIEEAEKRFMKENRPTS 225 (267)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHH----HHHHHHHSSTTSCCCHHHHHHHHHHHHCTTC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCcc----HHHHHhhcCcccCCCHHHHHHHHhhccCCcc
Confidence 2234578999999999998887643 47999999999987652 2222211111100000 00111
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
....+.+++|+|++++.++.. ......|+++++.++...+
T Consensus 226 ~~~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 226 IIQRLIRPEEIAHLVTFLSSP---LSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp SSCSCBCTHHHHHHHHHHHSG---GGTTCCSCEEEESTTCSCS
T ss_pred cccCccCHHHHHHHHHHHcCc---cccCccCCeEEECCCcccc
Confidence 235788999999999988752 1234679999999986554
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=178.76 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=159.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+...... ..+.. ..++.++.+|++|.+++.++++
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G-~~Vi~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~ 99 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADG-LGVVIADLAAEKGKA-------LADEL-GNRAEFVSTNVTSEDSVLAAIEAAN 99 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-CTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHH-------HHHHh-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999 599999997642110 00001 3468999999999999988876
Q ss_pred ---CCCEEEEccc-CCC------------CCCChhhHHHhhHHHHHHHHHHHHhC----------CCCeEEEEcCccccc
Q 012270 84 ---GASTVFYVDA-TDL------------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVVF 137 (467)
Q Consensus 84 ---~~D~Vih~aa-~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~----------~v~r~v~~SS~~vyg 137 (467)
++|++||+++ ... ..+++...+++|+.++.++++++... +-.++|++||...+.
T Consensus 100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 179 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE 179 (281)
T ss_dssp TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence 5799999954 211 11225789999999999999987632 234899999997762
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 012270 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (467)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+..+......+..........+
T Consensus 180 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~--- 241 (281)
T 3ppi_A 180 ---------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIP--- 241 (281)
T ss_dssp ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCC---
T ss_pred ---------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcCC---
Confidence 2234578999999888887776543 4899999999999765322222223322222221
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
....+.+++|+|++++.++. .+...|+++++.++..++
T Consensus 242 -----~~~~~~~pedvA~~v~~l~s-----~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 242 -----FPKRLGTPDEFADAAAFLLT-----NGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp -----SSSSCBCHHHHHHHHHHHHH-----CSSCCSCEEEESTTCCCC
T ss_pred -----CCCCCCCHHHHHHHHHHHHc-----CCCcCCcEEEECCCcccC
Confidence 11457889999999999997 466789999999986554
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-21 Score=180.58 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=161.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|+||++++++|+++| ++|++++|+........++ +. ....++..+.+|++|++++.++++
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAG-ARILINGTDPSRVAQTVQE---FR--NVGHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHH---HH--HTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999876421100000 00 013568889999999999888876
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||... ..++++..+++|+.++.++.+++... +..++|++||...+.
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~----------- 167 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL----------- 167 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC-----------
Confidence 6899999999432 33456789999999999998876653 567999999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+...... +.+........ ....
T Consensus 168 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------p~~r 234 (271)
T 4ibo_A 168 ----ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKART---------PAKR 234 (271)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHS---------TTCS
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcC---------CCCC
Confidence 2234568999999999998887644 6899999999999877533211 12222222211 2245
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
+.+++|+|++++.++... .....|+++++.++...
T Consensus 235 ~~~pedva~~v~~L~s~~---~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 235 WGKPQELVGTAVFLSASA---SDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp CBCGGGGHHHHHHHHSGG---GTTCCSCEEEESTTGGG
T ss_pred CcCHHHHHHHHHHHhCcc---ccCCCCcEEEECCCeec
Confidence 678999999999887521 23467999999997543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=177.64 Aligned_cols=203 Identities=16% Similarity=0.036 Sum_probs=148.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~-~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+++|+||||+|+||++++++|++ +| ++|++++|+........+. +.. ...++.++.+|++|.+++.++++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQ---LQA--EGLSPRFHQLDIDDLQSIRALRDFL 76 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHH---HHH--TTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHH---HHh--cCCeeEEEECCCCCHHHHHHHHHHH
Confidence 568999999999999999999999 89 5999999975411000000 000 12468899999999999888876
Q ss_pred -----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCC--------
Q 012270 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSH-------- 141 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~-------- 141 (467)
++|+|||+||.... ..+++..+++|+.++.++++++.... ..++|++||...+.....
T Consensus 77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~ 156 (276)
T 1wma_A 77 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQK 156 (276)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHH
T ss_pred HHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhh
Confidence 78999999994321 23456789999999999999998763 249999999887742100
Q ss_pred -CCCCCCCCcc-----------------cCCCCCChHHHHHHHHHHHHHhhcCC-------CCceEEEEeCCCcccCCCC
Q 012270 142 -DIHNGDETLT-----------------CCWKFQDLMCDLKAQAEALVLFANNI-------DGLLTCALRPSNVFGPGDT 196 (467)
Q Consensus 142 -~~~~~~E~~p-----------------~~~~~~~~Y~~sK~~~E~~v~~~~~~-------~g~~~~ilRp~~i~G~~~~ 196 (467)
...+.+|+.+ .+..|...|+.+|+..|.+++.++.+ .|+++++++||.+.++...
T Consensus 157 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~ 236 (276)
T 1wma_A 157 FRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 236 (276)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred ccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCC
Confidence 0012222211 12234589999999999998887654 5899999999999776432
Q ss_pred CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 197 QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 197 ~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
. ..+.+++|+|++++.++.
T Consensus 237 ~------------------------~~~~~~~~~a~~~~~l~~ 255 (276)
T 1wma_A 237 P------------------------KATKSPEEGAETPVYLAL 255 (276)
T ss_dssp T------------------------TCSBCHHHHTHHHHHHHS
T ss_pred c------------------------cccCChhHhhhhHhhhhc
Confidence 1 136789999999999885
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=175.42 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=160.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........++ +. ....++..+.+|++|++++.++++
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHSDALQVVADE---IA--GVGGKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHH---HH--HTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976421100000 00 113468899999999999888876
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.++.++++++... + -.++|++||.+.+...
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~-------- 176 (276)
T 3r1i_A 105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN-------- 176 (276)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC--------
Confidence 6899999999432 23445678899999999999987653 3 2589999998765211
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
...+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... +.......... ....+
T Consensus 177 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~---------p~~r~ 241 (276)
T 3r1i_A 177 -----IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-ADYHALWEPKI---------PLGRM 241 (276)
T ss_dssp -----CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-GGGHHHHGGGS---------TTSSC
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-hHHHHHHHhcC---------CCCCC
Confidence 1124568999999999998887654 689999999999988764432 11222222211 22357
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+++|+|++++.++... .....|+++++.++.
T Consensus 242 ~~pedvA~~v~fL~s~~---~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 242 GRPEELTGLYLYLASAA---SSYMTGSDIVIDGGY 273 (276)
T ss_dssp BCGGGSHHHHHHHHSGG---GTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHcCcc---ccCccCcEEEECcCc
Confidence 78999999999887521 234679999998874
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=173.87 Aligned_cols=222 Identities=15% Similarity=0.076 Sum_probs=160.5
Q ss_pred CCCCEEEEEcCCCh--hHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGf--iG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.++++++||||+|+ ||++++++|+++| ++|++++|+........+ +.......++.++.+|++|+++++++++
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGERLEKSVHE----LAGTLDRNDSIILPCDVTNDAEIETCFA 79 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH----HHHTSSSCCCEEEECCCSSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchHHHHHHHH----HHHhcCCCCceEEeCCCCCHHHHHHHHH
Confidence 35789999999999 9999999999999 599999987531100000 1111222378999999999998887765
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+|+... ..+++...+++|+.++.++++++...- -.++|++||...+.
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 153 (266)
T 3oig_A 80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL------ 153 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS------
T ss_pred HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc------
Confidence 5899999999542 223456789999999999999998763 24899999987752
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..+.+.+.++.+ .|+++++++||.+..+..... ............
T Consensus 154 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 216 (266)
T 3oig_A 154 ---------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERA-------- 216 (266)
T ss_dssp ---------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHS--------
T ss_pred ---------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcC--------
Confidence 1234568999999999988877643 589999999999988653321 122222222211
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+.+++|+|++++.++... .....|+.+++.++.
T Consensus 217 -~~~~~~~p~dva~~v~~l~s~~---~~~~tG~~i~vdGG~ 253 (266)
T 3oig_A 217 -PLRRTTTPEEVGDTAAFLFSDM---SRGITGENLHVDSGF 253 (266)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred -CCCCCCCHHHHHHHHHHHcCCc---hhcCcCCEEEECCCe
Confidence 1234678999999999988621 234679999999873
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=170.32 Aligned_cols=219 Identities=15% Similarity=0.107 Sum_probs=157.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+|+++||||+|+||++++++|+++| +.|+++++........... .+. ....++..+.+|++|++++.++++
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~--~l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAERAQAVVS--EIE--QAGGRAVAIRADNRDAEAIEQAIRET 103 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHH--hcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5899886654211000000 000 113568899999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... ..++++..+++|+.++.++++++... +-.++|++||......
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~----------- 172 (271)
T 3v2g_A 104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV----------- 172 (271)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC-----------
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC-----------
Confidence 6899999999432 23456789999999999999998865 3469999999654310
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEecCCCcccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~---~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.++.... ....+. ... ....
T Consensus 173 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~----~~~---------~~~r 236 (271)
T 3v2g_A 173 ---PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHAEAQR----ERI---------ATGS 236 (271)
T ss_dssp ---CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSSHHHHH----HTC---------TTSS
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchhHHHHH----hcC---------CCCC
Confidence 1234578999999999998877643 48999999999999875432 111111 111 1234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+..++|+|++++.++.. ......|+++++.++.
T Consensus 237 ~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 237 YGEPQDIAGLVAWLAGP---QGKFVTGASLTIDGGA 269 (271)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhCc---ccCCccCCEEEeCcCc
Confidence 67899999999988741 1245679999998863
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-20 Score=175.31 Aligned_cols=226 Identities=14% Similarity=0.021 Sum_probs=159.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| +.|++++|+........+. +. ....++..+.+|++|++++.++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTEVEEVADE---IV--GAGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HT--TTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976421100000 10 113568899999999999887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... ..++++..+++|+.|+.++++++ ++.+..++|++||...+...
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~-------- 172 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF-------- 172 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC--------
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC--------
Confidence 6899999999432 22345678999999999999998 55567799999998765210
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcc-
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENM- 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~- 221 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+...... .... .. .+..........
T Consensus 173 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~-~~---~~~~~~~~~~p~~ 243 (283)
T 3v8b_A 173 -----TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEE-TA---IPVEWPKGQVPIT 243 (283)
T ss_dssp -----CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHH-HS---CCCBCTTCSCGGG
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchh-hh---hhhhhhhhcCccc
Confidence 1234568999999999998887643 5899999999999887543211 1110 00 000011111112
Q ss_pred -ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 -SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 -~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..+..++|+|++++.++.. ......|+++++.++
T Consensus 244 ~~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG 278 (283)
T 3v8b_A 244 DGQPGRSEDVAELIRFLVSE---RARHVTGSPVWIDGG 278 (283)
T ss_dssp TTCCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTT
T ss_pred cCCCCCHHHHHHHHHHHcCc---cccCCcCCEEEECcC
Confidence 4567899999999988752 123467999999886
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=176.03 Aligned_cols=207 Identities=13% Similarity=0.051 Sum_probs=144.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +.......++.++.+|++|++++.++++
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAE---CKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHH---HHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999975411000000 0000112357889999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHH----HHHHHHHHHhCCC--CeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g----~~~ll~aa~~~~v--~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ...+++..+++|+.+ ++++++++++.++ .++|++||...+..
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~-------- 178 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV-------- 178 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC--------
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc--------
Confidence 6999999999432 223457789999999 7777888888776 79999999977621
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~-----~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
. +..+...|+.+|+..|.+++.++. ..++++++++|+.+.++.. ... .......... ....
T Consensus 179 ---~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~----~~~----~~~~~~~~~~-~~~~ 244 (279)
T 1xg5_A 179 ---L--PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFA----FKL----HDKDPEKAAA-TYEQ 244 (279)
T ss_dssp ---C--SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHH----HHH----TTTCHHHHHH-HHC-
T ss_pred ---C--CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhh----hhh----cccChhHHhh-hccc
Confidence 0 223456899999999988876653 3689999999999976631 000 0000000000 0012
Q ss_pred ccccchhHHHHHHHHHHH
Q 012270 222 SDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~ 239 (467)
..+++++|+|++++.++.
T Consensus 245 ~~~~~~~dvA~~i~~l~~ 262 (279)
T 1xg5_A 245 MKCLKPEDVAEAVIYVLS 262 (279)
T ss_dssp --CBCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhc
Confidence 357889999999999987
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-21 Score=180.34 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=155.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
|+|+++||||+|+||++++++|+++|. ..|.+.+|+...... +.+.. ..++.++.+|++|.+++.++++
T Consensus 1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (254)
T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKK-------LKEKY-GDRFFYVVGDITEDSVLKQLVNAA 72 (254)
T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHH-------HHHHH-GGGEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHH-------HHHHh-CCceEEEECCCCCHHHHHHHHHHH
Confidence 357999999999999999999999862 488888887641100 00001 2468899999999999887765
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... +.++++..+++|+.|+.++.+++ ++.+ .++|++||...+.
T Consensus 73 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~--------- 142 (254)
T 3kzv_A 73 VKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNM--------- 142 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCC---------
T ss_pred HHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhcc---------
Confidence 6899999999522 22446779999999999999988 4445 7999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCCceEEec
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-~g~~~~ilRp~~i~G~~~~~~---------~~~~~~~~~~g~~~~~~g 216 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..++||.+..+..... -+.........
T Consensus 143 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (254)
T 3kzv_A 143 ------YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGL------- 209 (254)
T ss_dssp ------SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHH-------
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHH-------
Confidence 2234568999999999999888754 489999999999998754321 12222221111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.....+.+++|+|++++.++.... .....|+.+++.+++.
T Consensus 210 --~~~~r~~~p~dva~~v~~L~s~~~--~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 210 --KENNQLLDSSVPATVYAKLALHGI--PDGVNGQYLSYNDPAL 249 (254)
T ss_dssp --HTTC----CHHHHHHHHHHHHHCC--CGGGTTCEEETTCGGG
T ss_pred --HhcCCcCCcccHHHHHHHHHhhcc--cCCCCccEEEecCccc
Confidence 122457789999999999886210 0236889998887643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=176.60 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=160.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|++++.++++
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARK---LAG-ATGRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHH---HHH-HHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH-hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976421000000 000 013468899999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... +.++++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 169 (277)
T 4fc7_A 100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR---------- 169 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH----------
T ss_pred HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC----------
Confidence 6899999999322 2345678999999999999998753 3456999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~---~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+......|+.+|+..+.+.+.++.+ .|+++.+++||.+.++.... ............ ...
T Consensus 170 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~p~ 235 (277)
T 4fc7_A 170 -----GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTA---------SPL 235 (277)
T ss_dssp -----TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHT---------STT
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhcc---------CCC
Confidence 1234568999999999988877643 48999999999998763110 001112222221 123
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
..+.+++|+|++++.++.. ......|+++++.++..+
T Consensus 236 ~r~~~p~dvA~~v~fL~s~---~~~~itG~~i~vdGG~~~ 272 (277)
T 4fc7_A 236 QRLGNKTEIAHSVLYLASP---LASYVTGAVLVADGGAWL 272 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTHHH
T ss_pred CCCcCHHHHHHHHHHHcCC---ccCCcCCCEEEECCCccc
Confidence 4577899999999998852 123467999999987543
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=168.05 Aligned_cols=203 Identities=12% Similarity=0.019 Sum_probs=150.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|++... ......+.+|++|++++.++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~---------------~~~~~~~~~D~~~~~~v~~~~~~~ 68 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEE---------------ASASVIVKMTDSFTEQADQVTAEV 68 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTT---------------SSEEEECCCCSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCChhhc---------------cCCcEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976510 0135677899999998887765
Q ss_pred -------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++.+++... .-.++|++||...+.
T Consensus 69 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 139 (241)
T 1dhr_A 69 GKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD--------- 139 (241)
T ss_dssp HHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------
T ss_pred HHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc---------
Confidence 5899999999432 11335678999999999999998764 125899999987762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+-.+. ....... ...
T Consensus 140 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~--------~~~~~~~---------~~~ 196 (241)
T 1dhr_A 140 ------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--------NRKSMPE---------ADF 196 (241)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH--------HHHHSTT---------SCG
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc--------ccccCcc---------hhh
Confidence 1134568999999999999988754 46999999999875431 1111111 122
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..++..+|+|++++.++.. ......|+.+++.++.
T Consensus 197 ~~~~~~~~vA~~v~~l~~~---~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 197 SSWTPLEFLVETFHDWITG---NKRPNSGSLIQVVTTD 231 (241)
T ss_dssp GGSEEHHHHHHHHHHHHTT---TTCCCTTCEEEEEEET
T ss_pred ccCCCHHHHHHHHHHHhcC---CCcCccceEEEEeCCC
Confidence 3567789999999988752 1234568888887754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=174.78 Aligned_cols=230 Identities=14% Similarity=-0.001 Sum_probs=159.7
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.....++++++||||+|.||++++++|+++| ++|++++|+........+. +.......++..+.+|++|++++.+
T Consensus 1 M~~~~l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (265)
T 3lf2_A 1 MKPYDLSEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESA---LRQRFPGARLFASVCDVLDALQVRA 76 (265)
T ss_dssp --CCCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred CCccCcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHHhcCCceEEEEeCCCCCHHHHHH
Confidence 44334567899999999999999999999999 5999999976421000000 0010122358899999999998887
Q ss_pred HHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCC
Q 012270 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~ 142 (467)
+++ ++|++||+||... ..++++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 151 (265)
T 3lf2_A 77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ----- 151 (265)
T ss_dssp HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-----
Confidence 764 5899999999422 2345678999999999999998854 3456899999987652
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc----------HHHHHHHhcCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL----------VPLLVNLAKPG 209 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~----------~~~~~~~~~~g 209 (467)
+......|+.+|+..+.+.+.++.+ .|+++.+++||.+.++..... ...+.......
T Consensus 152 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (265)
T 3lf2_A 152 ----------PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARN 221 (265)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHH
T ss_pred ----------CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhc
Confidence 2234578999999999988877643 489999999999976531110 01111111110
Q ss_pred CceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 210 ~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
. ......+..++|+|++++.++... .....|+.+++.++.
T Consensus 222 ~-------~~p~~r~~~pedvA~~v~fL~s~~---~~~itG~~i~vdGG~ 261 (265)
T 3lf2_A 222 K-------QIPLGRLGKPIEAARAILFLASPL---SAYTTGSHIDVSGGL 261 (265)
T ss_dssp T-------TCTTCSCBCHHHHHHHHHHHHSGG---GTTCCSEEEEESSSC
T ss_pred c-------CCCcCCCcCHHHHHHHHHHHhCch---hcCcCCCEEEECCCC
Confidence 0 012345778999999999887521 234679999998874
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=174.75 Aligned_cols=222 Identities=9% Similarity=0.050 Sum_probs=158.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|++++.++++
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRA---LGE-QFGTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHCCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH-hcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976421000000 000 013578999999999988877765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... ..++++..+++|+.++.++.+++... + -.++|++||...+.
T Consensus 94 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 163 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA---------- 163 (266)
T ss_dssp HHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc----------
Confidence 6899999999432 23446778999999999999987643 2 35899999998762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... -.......... ....
T Consensus 164 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~p~~ 229 (266)
T 4egf_A 164 -----PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIAR---------IPLG 229 (266)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTT---------CTTS
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhc---------CCCC
Confidence 2234568999999999988877644 589999999999987632110 01111222222 1234
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+.+++|+|++++.++... .....|+++++.++..
T Consensus 230 r~~~p~dva~~v~~L~s~~---~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 230 RFAVPHEVSDAVVWLASDA---ASMINGVDIPVDGGYT 264 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCch---hcCccCcEEEECCCcc
Confidence 5778999999999887521 2346799999998743
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=172.15 Aligned_cols=193 Identities=12% Similarity=0.019 Sum_probs=144.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +.. ...++.++.+|++|.+++.++++
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~ 103 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAK---CKG--LGAKVHTFVVDCSNREDIYSSAKKVK 103 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEEcCHHHHHHHHHH---HHh--cCCeEEEEEeeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976411000000 000 12468899999999999887775
Q ss_pred ----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|+|||+||.... .++++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 104 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 172 (272)
T 1yb1_A 104 AEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV----------- 172 (272)
T ss_dssp HHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC-----------
T ss_pred HHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC-----------
Confidence 68999999994332 23356789999999888777664 45778999999998762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC------CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI------DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~------~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..|.+++.++.+ .|++++++||+.+.++.... . .....
T Consensus 173 ----~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~------------~-------~~~~~ 229 (272)
T 1yb1_A 173 ----SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN------------P-------STSLG 229 (272)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC------------T-------HHHHC
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc------------c-------ccccc
Confidence 1123468999999999998877643 48999999999998775221 0 01123
Q ss_pred cccchhHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~ 239 (467)
.+++++|+|++++.+++
T Consensus 230 ~~~~~~dva~~i~~~~~ 246 (272)
T 1yb1_A 230 PTLEPEEVVNRLMHGIL 246 (272)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57899999999999987
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=173.92 Aligned_cols=215 Identities=14% Similarity=0.098 Sum_probs=157.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+....... .... ..++..+.+|++|++++.++++
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 74 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADG-ATVIVSDINAEGAKAA-------AASI-GKKARAIAADISDPGSVKALFAEI 74 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHH-------HHHH-CTTEEECCCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-------HHHh-CCceEEEEcCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999 5999999976421100 0001 3568889999999999888775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHH----HHhCC-CCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECK-VRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~a----a~~~~-v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... +.++++..+++|+.++.++.++ +++.+ ..++|++||...+.
T Consensus 75 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 145 (247)
T 3rwb_A 75 QALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA--------- 145 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH---------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc---------
Confidence 6899999999432 2345678999999999999988 44444 57999999987762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc----HHHHHHHhcCCCceEEecCCC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL----VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~----~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+..+..... ...+.... .
T Consensus 146 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~------------~ 207 (247)
T 3rwb_A 146 ------GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML------------Q 207 (247)
T ss_dssp ------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH------------S
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc------------c
Confidence 1234568999999999888877644 689999999999976532110 11111110 1
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+..++|+|++++.++..- .....|+++++.++.
T Consensus 208 ~~~r~~~pedva~~v~~L~s~~---~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 208 AMKGKGQPEHIADVVSFLASDD---ARWITGQTLNVDAGM 244 (247)
T ss_dssp SSCSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTS
T ss_pred ccCCCcCHHHHHHHHHHHhCcc---ccCCCCCEEEECCCc
Confidence 1234567999999999887521 234679999998873
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=170.86 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=157.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+.........+ .+. ....++.++.+|++|.+++.++++
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVA--AIK--KNGSDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHH--HHH--HhCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 5999999875311000000 000 013468889999999998877654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|+|||+||... ..++++..+++|+.|+.++++++... +..++|++||...+..
T Consensus 103 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------ 170 (283)
T 1g0o_A 103 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK------------ 170 (283)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS------------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC------------
Confidence 5899999999432 23456788999999999999999876 5679999999866421
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-----------HHHHHHHhcCCCceEEec
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-----------~~~~~~~~~~g~~~~~~g 216 (467)
...+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++..... -+.........
T Consensus 171 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 241 (283)
T 1g0o_A 171 --AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV------- 241 (283)
T ss_dssp --SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHH-------
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhh-------
Confidence 1113568999999999998877632 589999999999987631100 01111111110
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.......+.+++|+|++++.++... .....|+.+++.++.
T Consensus 242 ~~~p~~r~~~p~dvA~~v~~l~s~~---~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 242 QWSPLRRVGLPIDIARVVCFLASND---GGWVTGKVIGIDGGA 281 (283)
T ss_dssp HSCTTCSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred cCCCCCCCcCHHHHHHHHHHHhCcc---ccCcCCCEEEeCCCc
Confidence 0112235788999999999988521 134678999998863
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-20 Score=171.52 Aligned_cols=203 Identities=9% Similarity=0.011 Sum_probs=137.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|++++.++++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAE---IE--AAGGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHH---HH--HTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HH--hcCCeEEEEECcCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 5999999976521100000 00 013468899999999999988876
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... ..++++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 79 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 147 (252)
T 3h7a_A 79 DAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR----------- 147 (252)
T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC-----------
T ss_pred HhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC-----------
Confidence 5799999999432 234467899999999999988874 34567999999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceE-EEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLT-CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~-~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++ .++.||.+..+......+..... ........ +
T Consensus 148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~~---------~~~~~~~~-~ 213 (252)
T 3h7a_A 148 ----GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGK---------DALANPDL-L 213 (252)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------------
T ss_pred ----CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhhhhh---------hhhcCCcc-C
Confidence 1234568999999999988877643 58999 89999998766433222211111 11111223 8
Q ss_pred cchhHHHHHHHHHHH
Q 012270 225 TYVENVAHAHVCAAE 239 (467)
Q Consensus 225 i~v~Dva~a~~~al~ 239 (467)
.+++|+|++++.++.
T Consensus 214 ~~pedvA~~~~~l~s 228 (252)
T 3h7a_A 214 MPPAAVAGAYWQLYQ 228 (252)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 899999999999987
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=178.45 Aligned_cols=208 Identities=16% Similarity=0.071 Sum_probs=144.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|.+++.++++
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 103 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNG---LR--GQGFDAHGVVCDVRHLDEMVRLADEAF 103 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976421100000 00 013478899999999999888775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... +.++++..+++|+.|+.++++++.. .+ ..++|++||...+.
T Consensus 104 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 173 (301)
T 3tjr_A 104 RLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV---------- 173 (301)
T ss_dssp HHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS----------
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC----------
Confidence 6899999999432 2345678999999999999998754 23 46999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHH-----hcCCCceEEecCCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-----AKPGWTKFIIGSGE 219 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~-----~~~g~~~~~~g~g~ 219 (467)
+..+...|+.||+..|.+.+.++.+ .|+++++++||.+..+. ....... .....+...++...
T Consensus 174 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
T 3tjr_A 174 -----PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKL----VSNSERIRGADYGMSATPEGAFGPLP 244 (301)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSH----HHHHHHHC------------------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccc----ccccccccchhhccccChhhhccccc
Confidence 2234568999999998888776533 58999999999987553 2211110 01111112223333
Q ss_pred ccccccchhHHHHHHHHHHH
Q 012270 220 NMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~ 239 (467)
...++++++|+|++++.+++
T Consensus 245 ~~~~~~~pedvA~~i~~~l~ 264 (301)
T 3tjr_A 245 TQDESVSADDVARLTADAIL 264 (301)
T ss_dssp ----CCCHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHh
Confidence 44578999999999999998
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=171.11 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=158.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|+++++........... .+. ....++.++.+|++|++++.++++
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAEKVVS--EIK--ALGSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHH--HHH--hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999887654311000000 000 013568899999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCC--eEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~--r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... ..++++..+++|+.|+.++.+++...-.+ ++|++||......
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 159 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF----------- 159 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC-----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC-----------
Confidence 5899999999432 33456789999999999999999876433 9999999753200
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc------------HHHHHHHhcCCCceEE
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL------------VPLLVNLAKPGWTKFI 214 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~------------~~~~~~~~~~g~~~~~ 214 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..++||.+..+..... ..........
T Consensus 160 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 230 (270)
T 3is3_A 160 ---SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH------ 230 (270)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH------
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHh------
Confidence 2234578999999999998887654 589999999999987742210 0111111111
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
......+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 231 ---~~p~~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 231 ---ASPLHRNGWPQDVANVVGFLVSK---EGEWVNGKVLTLDGGA 269 (270)
T ss_dssp ---HSTTCSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTC
T ss_pred ---cCCCCCCCCHHHHHHHHHHHcCC---ccCCccCcEEEeCCCC
Confidence 11234577899999999988751 1234679999998863
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-20 Score=173.73 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=162.6
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHH
Q 012270 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 6 ~~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
..+|+|+||||+ |+||++++++|+++| ++|++++|+.... +. ..+. ...+++.++.+|++|++++.+++
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~----~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFK----DR---ITEFAAEFGSELVFPCDVADDAQIDALF 83 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGH----HH---HHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchhhH----HH---HHHHHHHcCCcEEEECCCCCHHHHHHHH
Confidence 467899999999 999999999999999 5999999874310 00 0000 01235788999999999988887
Q ss_pred h-------CCCEEEEcccCCC------------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCC
Q 012270 83 E-------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (467)
Q Consensus 83 ~-------~~D~Vih~aa~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~ 141 (467)
+ ++|+|||+||... ...++...+++|+.++.++++++... .-.++|++||.+.+.
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---- 159 (271)
T 3ek2_A 84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---- 159 (271)
T ss_dssp HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS----
T ss_pred HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc----
Confidence 5 5799999999432 23445778999999999999999775 234899999987752
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEec
Q 012270 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 142 ~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g 216 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+..+...... +.+........
T Consensus 160 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 222 (271)
T 3ek2_A 160 -----------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNS------ 222 (271)
T ss_dssp -----------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHS------
T ss_pred -----------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcC------
Confidence 2234578999999999998887643 5899999999999887544322 22332222221
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHH
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFL 267 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~ 267 (467)
....+..++|+|++++.++... .....|+.+++.++...++.++.
T Consensus 223 ---~~~~~~~pedva~~i~~l~s~~---~~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 223 ---PLKRNVTIEQVGNAGAFLLSDL---ASGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp ---TTSSCCCHHHHHHHHHHHHSGG---GTTCCSEEEEESTTGGGBCCCC-
T ss_pred ---CcCCCCCHHHHHHHHHHHcCcc---cCCeeeeEEEECCCeeeehhhhh
Confidence 1235678999999999988621 24568999999999777665543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-18 Score=163.94 Aligned_cols=233 Identities=14% Similarity=0.083 Sum_probs=160.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCC---------cCCCCCCC--cCCCCCeEEEEecCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS---------ESNSLLPD--SLSSGRAEYHQVDVRD 74 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~---------~~~~~~~~--~~~~~~v~~~~~Dl~d 74 (467)
..+|+++||||+|.||+++++.|+++| ++|++++|+........ +....... .....++..+.+|++|
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 356899999999999999999999999 59999998743111000 00000000 0123578899999999
Q ss_pred HHHHHHHHh-------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCcc
Q 012270 75 ISQIKKVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTAD 134 (467)
Q Consensus 75 ~~~l~~~~~-------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~ 134 (467)
++++.++++ ++|++||+||... +.++++..+++|+.++.++++++... + -.++|++||..
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG 167 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 999887765 6899999999432 22446779999999999999987653 2 45899999987
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcC---
Q 012270 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--- 208 (467)
Q Consensus 135 vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~--- 208 (467)
.+. +......|+.+|+..+.+.+.++.+ +|+++.+++||.+..+....... ......
T Consensus 168 ~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~ 230 (286)
T 3uve_A 168 GLK---------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGT--FKMFRPDLE 230 (286)
T ss_dssp GTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHH--HHHHCTTSS
T ss_pred hcc---------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccch--hhhcccccc
Confidence 762 1234568999999999988877644 68999999999999886442111 011100
Q ss_pred -CCc-----eEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 209 -GWT-----KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 209 -g~~-----~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
..+ ......... ..+.+++|+|++++.++.. ......|+++++.++..
T Consensus 231 ~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~---~a~~itG~~i~vdGG~~ 284 (286)
T 3uve_A 231 NPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASD---EARYITGVTLPIDAGSC 284 (286)
T ss_dssp SCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred ccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCc---cccCCcCCEEeECCccc
Confidence 000 000011111 5678999999999998852 12346799999998754
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=173.37 Aligned_cols=220 Identities=13% Similarity=0.118 Sum_probs=155.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+|+++||||+|+||++++++|+++|. ..|++.+|+........+. +.......++.++.+|++|++++.++++
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKT---IDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHH---HHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHH---HHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 457999999999999999999999983 2899999876421000000 0111123468889999999999998876
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... ..++++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------- 180 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD-------- 180 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS--------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC--------
Confidence 4899999999432 23456789999999999999988 445677999999987652
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEecCC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~----~~~~~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+..+... ............
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---------- 243 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKD---------- 243 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTT----------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhcc----------
Confidence 2234568999999999998887654 6899999999999766310 000111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
..++.++|+|++++.++... .....|+++.+.+++.
T Consensus 244 ---~~p~~pedvA~~v~~l~s~~---~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 244 ---TTPLMADDVADLIVYATSRK---QNTVIADTLIFPTNQA 279 (287)
T ss_dssp ---SCCEEHHHHHHHHHHHHTSC---TTEEEEEEEEEETTEE
T ss_pred ---cCCCCHHHHHHHHHHHhCCC---CCeEecceEEeeCCCC
Confidence 11337999999999988621 1234578888887643
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-19 Score=170.80 Aligned_cols=233 Identities=15% Similarity=0.069 Sum_probs=158.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC--CCCCCC-----cCCCCCeEEEEecCCCHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES--NSLLPD-----SLSSGRAEYHQVDVRDISQIK 79 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~-----~~~~~~v~~~~~Dl~d~~~l~ 79 (467)
.+|+++||||+|+||+++++.|+++| ++|++++|........... ...+.+ .....++.++.+|++|++++.
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 46799999999999999999999999 5999998864311000000 000000 011357889999999999988
Q ss_pred HHHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccCC
Q 012270 80 KVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGS 140 (467)
Q Consensus 80 ~~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~~ 140 (467)
++++ ++|++||+||... ..++++..+++|+.++.++++++... + -.++|++||...+.
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~--- 200 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR--- 200 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC---
Confidence 8775 6899999999432 23456789999999999999988542 2 35799999987762
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCC---Cc---
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG---WT--- 211 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g---~~--- 211 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+.++.... ..+....... ..
T Consensus 201 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~~ 266 (317)
T 3oec_A 201 ------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALN--EKLLKMFLPHLENPTRED 266 (317)
T ss_dssp ------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHC--HHHHHHHCTTCSSCCHHH
T ss_pred ------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccc--hhhhhhhhhhccccchhH
Confidence 1234568999999999998887654 58999999999998764211 0011111100 00
Q ss_pred -eEEe-cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 212 -KFII-GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 212 -~~~~-g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.... ........+++++|+|++++.++.. ......|+++++.++..
T Consensus 267 ~~~~~~~~~~~p~~~~~pedvA~av~fL~s~---~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 267 AAELFSQLTLLPIPWVEPEDVSNAVAWLASD---EARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHTTTCSSSSSSBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGG
T ss_pred HHHHHhhhccCCCCCCCHHHHHHHHHHHcCC---cccCCCCCEEEECcchh
Confidence 0000 0011125788999999999988741 12346799999998743
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=169.67 Aligned_cols=219 Identities=12% Similarity=0.037 Sum_probs=159.6
Q ss_pred CCCEEEEEcCCCh--hHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGf--iG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++||||+|+ ||++++++|+++| ++|++++|+.... ..+. +.. ..+++.++.+|++|.+++.++++
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~~--~~~~---l~~--~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREG-AELAFTYVGQFKD--RVEK---LCA--EFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTT-CEEEEEECTTCHH--HHHH---HHG--GGCCSEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcC-CEEEEeeCchHHH--HHHH---HHH--hcCCceEEEeecCCHHHHHHHHHH
Confidence 4689999999988 9999999999999 5999999976100 0000 111 12358899999999999887765
Q ss_pred ------CCCEEEEcccCCC------------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCC
Q 012270 84 ------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 84 ------~~D~Vih~aa~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~ 142 (467)
++|+|||+||... ..+++...+++|+.++.++++++... +..++|++||.+.+.
T Consensus 97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----- 171 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK----- 171 (280)
T ss_dssp HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS-----
T ss_pred HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc-----
Confidence 4799999999542 33445678999999999999998764 346999999987762
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~ 217 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... ............
T Consensus 172 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------- 234 (280)
T 3nrc_A 172 ----------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVS------- 234 (280)
T ss_dssp ----------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHS-------
T ss_pred ----------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcC-------
Confidence 2234568999999999998876543 689999999999988754321 122322222211
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
....+..++|+|++++.++.. ......|+++++.++..
T Consensus 235 --p~~~~~~pedvA~~v~~l~s~---~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 235 --PLKKNVDIMEVGNTVAFLCSD---MATGITGEVVHVDAGYH 272 (280)
T ss_dssp --TTCSCCCHHHHHHHHHHTTSG---GGTTCCSCEEEESTTGG
T ss_pred --CCCCCCCHHHHHHHHHHHhCc---ccCCcCCcEEEECCCcc
Confidence 123467799999999988752 12346799999999743
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=162.87 Aligned_cols=218 Identities=11% Similarity=0.044 Sum_probs=153.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecC--CCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~- 83 (467)
++|+++||||+|+||+++++.|+++| ++|++++|+........+. +.. ....++.++.+|+ +|.+++.++++
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEKLRQVASH---INE-ETGRQPQWFILDLLTCTSENCQQLAQR 85 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-hcCCCceEEEEecccCCHHHHHHHHHH
Confidence 46799999999999999999999999 5999999976421000000 000 0123678899999 89988877765
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||... ..++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------- 157 (252)
T 3f1l_A 86 IAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ-------- 157 (252)
T ss_dssp HHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS--------
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc--------
Confidence 5899999999421 12335678999999999999988 455677999999987652
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCC--ceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g--~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+.+ +++..+.||.+..+. ....... .....
T Consensus 158 -------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~--------~~~~~~~---------~~~~~ 213 (252)
T 3f1l_A 158 -------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM--------RASAFPT---------EDPQK 213 (252)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH--------HHHHCTT---------CCGGG
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch--------hhhhCCc---------cchhc
Confidence 123456899999999999888765443 899999999885431 1111111 12235
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHH
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~ 264 (467)
+..++|+|.+++.++... .....|+.+++.++...++.
T Consensus 214 ~~~p~dva~~~~~L~s~~---~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 214 LKTPADIMPLYLWLMGDD---SRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp SBCTGGGHHHHHHHHSGG---GTTCCSCEEESSCC------
T ss_pred cCCHHHHHHHHHHHcCcc---ccCCCCCEEEeCCCcCCCCC
Confidence 778999999999887521 23467999999998766554
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=167.43 Aligned_cols=234 Identities=12% Similarity=0.031 Sum_probs=159.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC-----CcC-CCCCCC-cCCCCCeEEEEecCCCHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-----SES-NSLLPD-SLSSGRAEYHQVDVRDISQIK 79 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~-----~~~-~~~~~~-~~~~~~v~~~~~Dl~d~~~l~ 79 (467)
.+++++||||+|.||+++++.|+++| +.|++++|++...... .+. ...... .....++..+.+|++|.+++.
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 46799999999999999999999999 5999999874311000 000 000000 011357889999999999988
Q ss_pred HHHh-------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccC
Q 012270 80 KVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDG 139 (467)
Q Consensus 80 ~~~~-------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~ 139 (467)
++++ ++|++||+||... +.++++..+++|+.|+.++++++... +..++|++||...+.
T Consensus 106 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~-- 183 (299)
T 3t7c_A 106 AAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR-- 183 (299)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS--
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc--
Confidence 7765 6899999999432 22446789999999999999987543 356899999987762
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceE--
Q 012270 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKF-- 213 (467)
Q Consensus 140 ~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~-- 213 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+....... .............
T Consensus 184 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 250 (299)
T 3t7c_A 184 -------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDF 250 (299)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHH
T ss_pred -------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHH
Confidence 1234568999999999988877644 48999999999999886432111 0000000000000
Q ss_pred ----EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 214 ----IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 214 ----~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
....... ..+..++|+|++++.++.. ......|+++++.++..
T Consensus 251 ~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 251 QVASRQMHVLP-IPYVEPADISNAILFLVSD---DARYITGVSLPVDGGAL 297 (299)
T ss_dssp HHHHHHHSSSS-CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred HHHhhhhcccC-cCCCCHHHHHHHHHHHhCc---ccccCcCCEEeeCCCcc
Confidence 0001111 4578899999999998852 12346799999998753
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-19 Score=168.76 Aligned_cols=220 Identities=13% Similarity=0.061 Sum_probs=161.3
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
++++++||||+| +||++++++|+++| ++|++++|+.... +. .... ...+++.++.+|++|.+++.++++
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~~~~----~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSETFK----KR---VDPLAESLGVKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGH----HH---HHHHHHHHTCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCChHHH----HH---HHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Confidence 467999999998 99999999999999 5999999975310 00 0000 011346889999999999887775
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+||... +.+++...+++|+.++.++++++...-. .++|++||...+.
T Consensus 101 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~------ 174 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK------ 174 (296)
T ss_dssp HHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS------
T ss_pred HHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc------
Confidence 5899999999532 2345678999999999999999987532 4899999987752
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~~~~~~g~g 218 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+....... ..........
T Consensus 175 ---------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 237 (296)
T 3k31_A 175 ---------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNS-------- 237 (296)
T ss_dssp ---------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHS--------
T ss_pred ---------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcC--------
Confidence 2234568999999999998877643 58999999999999886554321 2222222211
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
....+..++|+|++++.++... .....|+++++.++..+
T Consensus 238 -p~~r~~~pedvA~~v~fL~s~~---a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 238 -PLRRNTTLDDVGGAALYLLSDL---GRGTTGETVHVDCGYHV 276 (296)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGGG
T ss_pred -CCCCCCCHHHHHHHHHHHcCCc---cCCccCCEEEECCCccc
Confidence 1234677999999999988521 24567999999998543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=166.88 Aligned_cols=220 Identities=14% Similarity=0.077 Sum_probs=157.6
Q ss_pred CCCEEEEEcCCCh--hHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGf--iG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++||||+|+ ||+++++.|+++| +.|++++|+....... +. +.. ...++.++.+|++|.+++.++++
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~-~~---~~~--~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDALKKRV-EP---LAE--ELGAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHHHHHHH-HH---HHH--HHTCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHHHHHH-HH---HHH--hcCCceEEECCCCCHHHHHHHHHH
Confidence 4679999999999 9999999999999 5999999874310000 00 000 11358889999999999888775
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... ..+++...+++|+.++.++++++...- -.++|++||...+.
T Consensus 103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~------- 175 (293)
T 3grk_A 103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK------- 175 (293)
T ss_dssp HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-------
T ss_pred HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-------
Confidence 5899999999542 234567899999999999999988652 34899999987762
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... ............
T Consensus 176 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--------- 238 (293)
T 3grk_A 176 --------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA--------- 238 (293)
T ss_dssp --------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHS---------
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcC---------
Confidence 1234578999999999998887643 589999999999988753321 122222222211
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
....+..++|+|++++.++... .....|+.+++.++..
T Consensus 239 p~~r~~~pedvA~~v~~L~s~~---~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 239 PLRRTVTIDEVGDVGLYFLSDL---SRSVTGEVHHADSGYH 276 (293)
T ss_dssp TTSSCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTGG
T ss_pred CCCCCCCHHHHHHHHHHHcCcc---ccCCcceEEEECCCcc
Confidence 1234677999999999888521 2346799999999844
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=165.94 Aligned_cols=233 Identities=15% Similarity=0.080 Sum_probs=158.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCC------CCcCCCCCCC--cCCCCCeEEEEecCCCHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD------PSESNSLLPD--SLSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~------~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l 78 (467)
.+++++||||+|.||++++++|+++| ++|++++|....... ..+....... .....++..+.+|++|.+++
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL 88 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 56899999999999999999999999 599999985321000 0000000000 01235788999999999998
Q ss_pred HHHHh-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----C-CCeEEEEcCccccccC
Q 012270 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDG 139 (467)
Q Consensus 79 ~~~~~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~-v~r~v~~SS~~vyg~~ 139 (467)
.++++ ++|++||+||... +.++++..+++|+.++.++++++... + -.++|++||...+.
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-- 166 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK-- 166 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC--
Confidence 87765 4899999999432 23456788999999999999886543 3 45899999987762
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCc-eEE
Q 012270 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWT-KFI 214 (467)
Q Consensus 140 ~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-~~~~~~~~~~g~~-~~~ 214 (467)
+......|+.+|+..+.+.+.++.+ .|+++.+++||.+..+..... ............. ...
T Consensus 167 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 233 (277)
T 3tsc_A 167 -------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHV 233 (277)
T ss_dssp -------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTTT
T ss_pred -------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHHH
Confidence 1233568999999999998877644 589999999999987754321 1111111111110 001
Q ss_pred ecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...... ..+.+++|+|++++.++... .....|+++++.++.
T Consensus 234 ~~~~~p-~r~~~pedvA~~v~~L~s~~---~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 234 LTPFLP-DWVAEPEDIADTVCWLASDE---SRKVTAAQIPVDQGS 274 (277)
T ss_dssp TCCSSS-CSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred hhhccC-CCCCCHHHHHHHHHHHhCcc---ccCCcCCEEeeCCCc
Confidence 111111 24889999999999988521 234679999998873
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=168.21 Aligned_cols=219 Identities=12% Similarity=0.082 Sum_probs=157.0
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+|+++||||+ |+||++++++|+++| ++|++++|+.... ...+. +... .+++.++.+|++|++++.++++
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G-~~V~~~~r~~~~~-~~~~~---l~~~--~~~~~~~~~D~~~~~~v~~~~~~ 77 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNESLE-KRVRP---IAQE--LNSPYVYELDVSKEEHFKSLYNS 77 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTTTH-HHHHH---HHHH--TTCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHH---HHHh--cCCcEEEEcCCCCHHHHHHHHHH
Confidence 56899999999 999999999999999 5999999976300 00000 1000 1247889999999999887775
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|+|||+||... ..++++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------- 150 (275)
T 2pd4_A 78 VKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------- 150 (275)
T ss_dssp HHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-------
T ss_pred HHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC-------
Confidence 5799999999532 123456799999999999999998761 25899999976642
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+.++..... .+.+........+
T Consensus 151 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p-------- 214 (275)
T 2pd4_A 151 --------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAP-------- 214 (275)
T ss_dssp --------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST--------
T ss_pred --------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCC--------
Confidence 1123468999999999998877543 489999999999998753321 1222222221111
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+.+++|+|++++.++... .....|+.+++.++.
T Consensus 215 -~~~~~~p~dva~~~~~l~s~~---~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 215 -LRKNVSLEEVGNAGMYLLSSL---SSGVSGEVHFVDAGY 250 (275)
T ss_dssp -TSSCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred -cCCCCCHHHHHHHHHHHhCcc---ccCCCCCEEEECCCc
Confidence 124668999999999988521 234578899998873
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-19 Score=165.48 Aligned_cols=213 Identities=15% Similarity=0.065 Sum_probs=149.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
|+++||||+|+||++++++|+++| ++|++++|+...... ..+.. ..++..+.+|++|++++.++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERLQE-------LKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-CTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HHHHh-cCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999 599999997641100 00001 1368899999999999998876
Q ss_pred --CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 --GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 --~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... +.++++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------ 139 (248)
T 3asu_A 72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW------------ 139 (248)
T ss_dssp TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS------------
T ss_pred CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc------------
Confidence 5899999999531 123467799999999999988876 34678999999987652
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCccc-CCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFG-PGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G-~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.| +........-.... . ... ....++
T Consensus 140 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~---~--~~~----~~~~~~ 207 (248)
T 3asu_A 140 ---PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA---E--KTY----QNTVAL 207 (248)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-------------------------------CCB
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHH---H--HHH----hccCCC
Confidence 1233568999999999998876533 589999999999984 43211000000000 0 000 012346
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++|+|++++.++.. .....|+.+.+...
T Consensus 208 ~p~dvA~~v~~l~s~----~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 208 TPEDVSEAVWWVSTL----PAHVNINTLEMMPV 236 (248)
T ss_dssp CHHHHHHHHHHHHHS----CTTCCCCEEEECCT
T ss_pred CHHHHHHHHHHHhcC----CccceeeEEEEccc
Confidence 899999999998872 24566777777654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=169.99 Aligned_cols=195 Identities=13% Similarity=0.053 Sum_probs=140.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.++++|||||+|+||++++++|+++| ++|++++|+........+. +. ....++.++.+|++|.+++.++++
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRAVERE---IV--AAGGEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--HhCCceeEEEecCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 5999999976421100000 00 013468899999999999887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.|+.++++++.. .+..++|++||...+.
T Consensus 102 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 171 (262)
T 3rkr_A 102 AAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN---------- 171 (262)
T ss_dssp HHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC----------
T ss_pred HhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC----------
Confidence 4899999999521 2244567999999999999998654 5677999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+++.++.+ .|+++.+++||.+..+...... . ......+
T Consensus 172 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--------~---------~~~~~~~ 229 (262)
T 3rkr_A 172 -----PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS--------A---------KKSALGA 229 (262)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------C
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc--------c---------ccccccC
Confidence 2234578999999999988877643 6899999999988655322110 0 0122456
Q ss_pred cchhHHHHHHHHHHH
Q 012270 225 TYVENVAHAHVCAAE 239 (467)
Q Consensus 225 i~v~Dva~a~~~al~ 239 (467)
+.++|+|++++.++.
T Consensus 230 ~~p~dvA~~v~~l~s 244 (262)
T 3rkr_A 230 IEPDDIADVVALLAT 244 (262)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 789999999999886
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=171.52 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=151.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| +.|++.++........... .+. ....++..+.+|++|++++.++++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 100 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDG-FTVVINYAGKAAAAEEVAG--KIE--AAGGKALTAQADVSDPAAVRRLFATAE 100 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEESSCSHHHHHHHH--HHH--HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHH--HHH--hcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5888875433211000000 000 113568899999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|++||+||... ..++++..+++|+.|+.++++++... .-.++|++||...+.
T Consensus 101 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 167 (267)
T 3u5t_A 101 EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL------------- 167 (267)
T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH-------------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc-------------
Confidence 6899999999432 22345678899999999999988764 224899999987752
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCccccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+...... ......... ......+..
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~~p~~r~~~ 236 (267)
T 3u5t_A 168 --LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAK---------LAPLERLGT 236 (267)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHHT---------SSTTCSCBC
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHHh---------cCCCCCCcC
Confidence 1123468999999999998887654 4899999999999776422111 111111111 123346778
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
++|+|++++.++.. ......|+.+++.++
T Consensus 237 pedvA~~v~~L~s~---~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 237 PQDIAGAVAFLAGP---DGAWVNGQVLRANGG 265 (267)
T ss_dssp HHHHHHHHHHHHST---TTTTCCSEEEEESSS
T ss_pred HHHHHHHHHHHhCc---cccCccCCEEEeCCC
Confidence 99999999988751 123457899999876
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=166.90 Aligned_cols=219 Identities=12% Similarity=0.013 Sum_probs=155.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC-CccCCCCcCCCCCCCcCCCCCeEEEEecCCC----HHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ-SLQLDPSESNSLLPDSLSSGRAEYHQVDVRD----ISQIKKV 81 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~l~~~ 81 (467)
++|+++||||+|+||++++++|+++| ++|++++|+. .......+. +.. ....++.++.+|++| ++++.++
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~~---l~~-~~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADE---LNK-ERSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCHHHHHHHHHH---HHH-HSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHH---HHh-hcCCceEEEEeecCCccCCHHHHHHH
Confidence 46899999999999999999999999 5999999976 210000000 000 012468899999999 8888777
Q ss_pred Hh-------CCCEEEEcccCCCC-----------------CCChhhHHHhhHHHHHHHHHHHHhC----C------CCeE
Q 012270 82 LE-------GASTVFYVDATDLN-----------------TDDFYNCYMIIVQGAKNVVTACREC----K------VRRL 127 (467)
Q Consensus 82 ~~-------~~D~Vih~aa~~~~-----------------~~~~~~~~~~nv~g~~~ll~aa~~~----~------v~r~ 127 (467)
++ ++|+|||+||.... ..++...+++|+.++.++.+++... + ..++
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~i 176 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSI 176 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEE
Confidence 65 68999999994321 1224568999999999999887654 2 4589
Q ss_pred EEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHH
Q 012270 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN 204 (467)
Q Consensus 128 v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~ 204 (467)
|++||...+. +..+...|+.+|+..+.+.+.++.+ .|+++++++||.++++. .. .+....
T Consensus 177 v~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~-~~~~~~ 239 (288)
T 2x9g_A 177 VNLCDAMVDQ---------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AM-GEEEKD 239 (288)
T ss_dssp EEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TS-CHHHHH
T ss_pred EEEecccccC---------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-cc-ChHHHH
Confidence 9999987762 1234568999999988888776543 48999999999999986 32 122222
Q ss_pred HhcCCCceEEecCCCccccc-cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 205 LAKPGWTKFIIGSGENMSDF-TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 205 ~~~~g~~~~~~g~g~~~~~~-i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
......+ ...+ ..++|+|++++.++... .....|+.+++.++.
T Consensus 240 ~~~~~~p---------~~r~~~~pedvA~~v~~l~s~~---~~~itG~~i~vdGG~ 283 (288)
T 2x9g_A 240 KWRRKVP---------LGRREASAEQIADAVIFLVSGS---AQYITGSIIKVDGGL 283 (288)
T ss_dssp HHHHTCT---------TTSSCCCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTG
T ss_pred HHHhhCC---------CCCCCCCHHHHHHHHHHHhCcc---ccCccCCEEEECcch
Confidence 2211111 1234 68999999999988521 234678899998864
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=169.79 Aligned_cols=229 Identities=16% Similarity=0.072 Sum_probs=153.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ...++..+.+|++|++++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEAS---VRE--KGVEARSYVCDVTSEEAVIGTVDSV 78 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHT--TTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999976411000000 000 12468889999999998877765
Q ss_pred -----CCCEEEEcccCC-C-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~-~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||.. . ..++++..+++|+.++.++++++... +..++|++||...+..
T Consensus 79 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 150 (262)
T 1zem_A 79 VRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG-------- 150 (262)
T ss_dssp HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC--------
T ss_pred HHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC--------
Confidence 689999999854 1 22345778999999999999887653 5679999999877621
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcC---C-Cc--e-EEec
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP---G-WT--K-FIIG 216 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~---g-~~--~-~~~g 216 (467)
..+...|+.+|+..+.+.+.++. ..|+++++++||.+..+........+...... . .+ . ....
T Consensus 151 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (262)
T 1zem_A 151 -------PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMI 223 (262)
T ss_dssp -------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHH
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHH
Confidence 12346899999998888777653 35899999999988654211100000000000 0 00 0 0000
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.......+..++|+|++++.++... .....|+.+.+.++
T Consensus 224 ~~~p~~r~~~p~dvA~~v~~l~s~~---~~~itG~~i~vdGG 262 (262)
T 1zem_A 224 GSVPMRRYGDINEIPGVVAFLLGDD---SSFMTGVNLPIAGG 262 (262)
T ss_dssp HTSTTSSCBCGGGSHHHHHHHHSGG---GTTCCSCEEEESCC
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCch---hcCcCCcEEecCCC
Confidence 0011234678999999999887521 23457888888764
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=171.28 Aligned_cols=219 Identities=10% Similarity=-0.005 Sum_probs=157.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc-CCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---------
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS--------- 76 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--------- 76 (467)
.++++|||||+|+||+++++.|+++| ++|++++ |+........+. +.. ....++.++.+|++|.+
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G-~~Vv~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~ 119 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSAT---LNA-RRPNSAITVQADLSNVATAPVSGADG 119 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HHH-HSTTCEEEEECCCSSSCBCC------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHH---HHh-hcCCeEEEEEeeCCCchhcccccccc
Confidence 35789999999999999999999999 5999999 765311000000 000 01246889999999988
Q ss_pred --------HHHHHHh-------CCCEEEEcccCCC-------C--------------CCChhhHHHhhHHHHHHHHHHHH
Q 012270 77 --------QIKKVLE-------GASTVFYVDATDL-------N--------------TDDFYNCYMIIVQGAKNVVTACR 120 (467)
Q Consensus 77 --------~l~~~~~-------~~D~Vih~aa~~~-------~--------------~~~~~~~~~~nv~g~~~ll~aa~ 120 (467)
++.++++ ++|+|||+||... . .++++..+++|+.++.++++++.
T Consensus 120 ~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 199 (328)
T 2qhx_A 120 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 199 (328)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877765 6899999999432 1 23345789999999999998876
Q ss_pred h----CC------CCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeC
Q 012270 121 E----CK------VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRP 187 (467)
Q Consensus 121 ~----~~------v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp 187 (467)
. .+ ..++|++||...+. +..+...|+.+|+..+.+.+.++.+ .|+++++++|
T Consensus 200 ~~m~~~~~~~~~~~g~IV~isS~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~P 264 (328)
T 2qhx_A 200 HRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 264 (328)
T ss_dssp HHHHHSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHHHhcCCcCCCCCcEEEEECchhhcc---------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEec
Confidence 3 34 57999999987652 1234568999999999998887643 4899999999
Q ss_pred CCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc-cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 188 ~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~-~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
|.+..+. .. .+..........+ .. .+..++|+|++++.++.. ......|+.+++.++.
T Consensus 265 G~v~T~~-~~-~~~~~~~~~~~~p---------~~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~ 323 (328)
T 2qhx_A 265 GLSVLVD-DM-PPAVWEGHRSKVP---------LYQRDSSAAEVSDVVIFLCSS---KAKYITGTCVKVDGGY 323 (328)
T ss_dssp SSBSCCC-CS-CHHHHHHHHTTCT---------TTTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred CcccCCc-cc-cHHHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCc---cccCccCcEEEECCCc
Confidence 9999887 33 2333333322211 12 467899999999998851 1234678999998874
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=171.83 Aligned_cols=225 Identities=11% Similarity=-0.002 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|.||++++++|+++| ++|++++|.........+....+. ....++.++.+|++|++++.++++
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKDSDTANKLKDELE--DQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSS-CEEEEEESCGGGHHHHHHHHHHHH--TTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecCccCHHHHHHHHHHHH--hcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599998875431000000000000 013468889999999999888775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|++||+||... ..++++..+++|+.++.++++++... +..++|++||.+.+..
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~------------ 154 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY------------ 154 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC------------
Confidence 5899999999432 23446678999999999999999875 4468999999877631
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+... ...................+..+
T Consensus 155 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~--------~~~~~~~~~~~~~~~~~~r~~~p 223 (262)
T 3ksu_A 155 ---TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFY--------GQETKESTAFHKSQAMGNQLTKI 223 (262)
T ss_dssp ---HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHH--------TCC------------CCCCSCCG
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccc--------ccCchHHHHHHHhcCcccCCCCH
Confidence 123467999999999998887644 4899999999988544210 00000101111122233467889
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
+|+|++++.++.. .....|+.+++.++...
T Consensus 224 edvA~~v~~L~s~----~~~itG~~i~vdGg~~~ 253 (262)
T 3ksu_A 224 EDIAPIIKFLTTD----GWWINGQTIFANGGYTT 253 (262)
T ss_dssp GGTHHHHHHHHTT----TTTCCSCEEEESTTCCC
T ss_pred HHHHHHHHHHcCC----CCCccCCEEEECCCccC
Confidence 9999999998862 23467999999987543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=165.90 Aligned_cols=191 Identities=15% Similarity=0.073 Sum_probs=138.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA-- 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 85 (467)
||+++||||+|+||++++++|+++| ++|++++|+........ +.. ..++.++.+|++|.+++.++++.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~-------~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 71 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEG-KATYLTGRSESKLSTVT-------NCL-SNNVGYRARDLASHQEVEQLFEQLDS 71 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHH-------HTC-SSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-------HHH-hhccCeEeecCCCHHHHHHHHHHHhh
Confidence 5689999999999999999999999 58999999764211000 001 346889999999999999998764
Q ss_pred --CEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCC---CeEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 86 --STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 86 --D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v---~r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
|+|||+||... ..++++..+++|+.++.++++++...-. .++|++||...+. +
T Consensus 72 ~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~---------------~ 136 (230)
T 3guy_A 72 IPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ---------------P 136 (230)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS---------------C
T ss_pred cCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC---------------C
Confidence 99999999432 2244567899999999999998876422 2999999987762 2
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
..+...|+.+|+..+.+.+.++.+ .|+++..++||.+..+.... ... ......+.+++|+
T Consensus 137 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~~~---------~~~~~~~~~~~dv 199 (230)
T 3guy_A 137 KAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET--------SGK---------SLDTSSFMSAEDA 199 (230)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC---------------------------------CCCHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh--------cCC---------CCCcccCCCHHHH
Confidence 234568999999999998887644 48999999999886553211 000 1123467899999
Q ss_pred HHHHHHHHH
Q 012270 231 AHAHVCAAE 239 (467)
Q Consensus 231 a~a~~~al~ 239 (467)
|++++.++.
T Consensus 200 A~~i~~l~~ 208 (230)
T 3guy_A 200 ALMIHGALA 208 (230)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=163.62 Aligned_cols=225 Identities=12% Similarity=0.026 Sum_probs=160.7
Q ss_pred CCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++++++||||+ |.||++++++|+++| +.|++++|+.........+ .+.. ....++.++.+|++|++++.++++
T Consensus 19 ~~k~vlITGas~~~giG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~--~l~~-~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 19 KGKVVVVTGASGPKGMGIEAARGCAEMG-AAVAITYASRAQGAEENVK--ELEK-TYGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp TTCEEEETTCCSSSSHHHHHHHHHHHTS-CEEEECBSSSSSHHHHHHH--HHHH-HHCCCEECCBCCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEeCCcchhHHHHHH--HHHH-hcCCceeEEecCCCCHHHHHHHHHH
Confidence 56899999999 999999999999999 5999998876421000000 0000 013578889999999999887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++++++ ++.+..++|++||.+.+...
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 167 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN------- 167 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC-------
Confidence 4799999999432 23446779999999999999988 44466799999998765211
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCC--ceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g--~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
...+...|+.+|+..+.+.+.++.+.+ +++..+.||.+..+......+......... .....+
T Consensus 168 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~~r~ 232 (267)
T 3gdg_A 168 ------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVPKETQQLWHSM---------IPMGRD 232 (267)
T ss_dssp ------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSCHHHHHHHHTT---------STTSSC
T ss_pred ------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCCHHHHHHHHhc---------CCCCCC
Confidence 113456899999999999888765433 899999999997765433223333333222 233567
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
.+++|+|++++.++.. ......|+.+++.++..
T Consensus 233 ~~~~dva~~~~~l~s~---~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 233 GLAKELKGAYVYFASD---ASTYTTGADLLIDGGYT 265 (267)
T ss_dssp EETHHHHHHHHHHHST---TCTTCCSCEEEESTTGG
T ss_pred cCHHHHHhHhheeecC---ccccccCCEEEECCcee
Confidence 8899999999988751 12446799999998743
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-20 Score=170.83 Aligned_cols=204 Identities=12% Similarity=0.026 Sum_probs=133.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHH---HHH-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK---KVL- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~---~~~- 82 (467)
++++++||||+|+||++++++|.+ | +.|++++|++... .......++..+.+|+.|.++.. +.+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGRNPEHL----------AALAEIEGVEPIESDIVKEVLEEGGVDKLK 71 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEESCHHHH----------HHHHTSTTEEEEECCHHHHHHTSSSCGGGT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeCCHHHH----------HHHHhhcCCcceecccchHHHHHHHHHHHH
Confidence 578999999999999999999987 8 5899999876411 11111246889999998875421 122
Q ss_pred --hCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 83 --EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 83 --~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
.++|+|||+||... ..++++..+++|+.++.++.+++.. .+ .++|++||...+.
T Consensus 72 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~------------ 138 (245)
T 3e9n_A 72 NLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNG------------ 138 (245)
T ss_dssp TCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC------------------
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCccccc------------
Confidence 25899999999432 2234567899999998888887753 24 6899999998763
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++......... +.......+++
T Consensus 139 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~-------------~~~~~~~~~~~ 202 (245)
T 3e9n_A 139 ---PHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQ-------------GTNFRPEIYIE 202 (245)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------CCGGGSC
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhhh-------------hcccccccCCC
Confidence 1234568999999999998887653 5899999999999877533211110 01112346889
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
++|+|++++.+++ ....+.+||+.-
T Consensus 203 p~dvA~~i~~l~~------~~~~~~~~~i~~ 227 (245)
T 3e9n_A 203 PKEIANAIRFVID------AGETTQITNVDV 227 (245)
T ss_dssp HHHHHHHHHHHHT------SCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHc------CCCccceeeeEE
Confidence 9999999999997 344567887754
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-21 Score=189.61 Aligned_cols=192 Identities=12% Similarity=0.071 Sum_probs=135.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc------EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
++|+|+||||+||||++++..|+++|+. +|+++|+.+........ ..+ +....+.++ +|+++.+.+.+
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~----~~d-l~~~~~~~~-~di~~~~~~~~ 76 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGV----VME-LEDCAFPLL-AGLEATDDPKV 76 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHH----HHH-HHTTTCTTE-EEEEEESCHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccch----hhh-hhccccccc-CCeEeccChHH
Confidence 4579999999999999999999998842 89999986410000000 000 001112223 57776666788
Q ss_pred HHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCC-CC-eEEEEcCccccccCCCCCCCCC-CCcccCCCC
Q 012270 81 VLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNSTADVVFDGSHDIHNGD-ETLTCCWKF 156 (467)
Q Consensus 81 ~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~-r~v~~SS~~vyg~~~~~~~~~~-E~~p~~~~~ 156 (467)
+++++|+|||+||... ...++...++.|+.++.++++++++.+ .+ +++++|+..... . +.. |..+ +..|
T Consensus 77 a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~-~-----~~~~~~~~-~~~p 149 (327)
T 1y7t_A 77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN-A-----LIAYKNAP-GLNP 149 (327)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH-H-----HHHHHTCT-TSCG
T ss_pred HhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhh-H-----HHHHHHcC-CCCh
Confidence 8999999999999543 245677899999999999999999985 65 788888754100 0 111 1110 2345
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~ 211 (467)
.+.|+.+|..+|++...+++..|++++++||++||||+....++.+......|.+
T Consensus 150 ~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~ 204 (327)
T 1y7t_A 150 RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRP 204 (327)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEE
T ss_pred hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCee
Confidence 6789999999999999888878999999999999999876655555544445544
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=169.78 Aligned_cols=200 Identities=13% Similarity=0.076 Sum_probs=139.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+....... .... ..++.++.+|++|++++.++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~-------~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 97 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQET-------AAEI-GDDALCVPTDVTDPDSVRALFTATV 97 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH-------HHHH-TSCCEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH-------HHHh-CCCeEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999976421000 0001 2468899999999999888776
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----C--CCeEEEEcCccccccCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----K--VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----~--v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... ..++++..+++|+.|+.++.+++... + -.++|++||...+.
T Consensus 98 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------- 169 (272)
T 4dyv_A 98 EKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS-------- 169 (272)
T ss_dssp HHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS--------
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC--------
Confidence 6999999999532 22345789999999988888876643 2 35899999987752
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+........... .. ......
T Consensus 170 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~--------~~--~~~~~~ 232 (272)
T 4dyv_A 170 -------PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQ--------AD--LSIKVE 232 (272)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-------------------------------
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcccchh--------hh--hccccc
Confidence 2234568999999999998877643 589999999999987643321111100 00 011234
Q ss_pred cccchhHHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAEA 240 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~ 240 (467)
.+.+++|+|++++.++..
T Consensus 233 ~~~~pedvA~~v~fL~s~ 250 (272)
T 4dyv_A 233 PVMDVAHVASAVVYMASL 250 (272)
T ss_dssp ---CHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 578999999999999983
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=169.95 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=155.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|.+++.++++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 105 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKPGSTAAVQQR---II--ASGGTAQELAGDLSEAGAGTDLIERAE 105 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSTTTTHHHHHH---HH--HTTCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH---HH--hcCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999976421100000 00 123578899999999988887765
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... ..++++..+++|+.|+.++++++. +.+..++|++||...+.
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~------------ 173 (275)
T 4imr_A 106 AIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR------------ 173 (275)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC------------
Confidence 6899999999432 234567789999999999999874 34567999999987762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEecCCCcccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~---~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++||.+..+...... +.......... .....
T Consensus 174 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------~p~~r 242 (275)
T 4imr_A 174 ---PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTL--------NWMGR 242 (275)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHH--------STTCS
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhc--------CccCC
Confidence 2234467999999999988877644 4899999999999765321110 11111111100 01224
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+..++|+|++++.++..- .....|+++++.++
T Consensus 243 ~~~pedvA~~v~fL~s~~---a~~itG~~i~vdGG 274 (275)
T 4imr_A 243 AGRPEEMVGAALFLASEA---CSFMTGETIFLTGG 274 (275)
T ss_dssp CBCGGGGHHHHHHHHSGG---GTTCCSCEEEESSC
T ss_pred CcCHHHHHHHHHHHcCcc---cCCCCCCEEEeCCC
Confidence 567999999999887521 23467999999875
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.7e-19 Score=166.91 Aligned_cols=215 Identities=13% Similarity=0.014 Sum_probs=147.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG---- 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 84 (467)
|+++||||+|+||++++++|+++| ++|++++|+........+. +. ...++..+.+|++|++++.++++.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G-~~V~~~~r~~~~~~~~~~~---~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 94 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAG-WSLVLTGRREERLQALAGE---LS---AKTRVLPLTLDVRDRAAMSAAVDNLPEE 94 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HT---TTSCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---hh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999 5999999976421000000 00 014688999999999999988865
Q ss_pred ---CCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hCCCC-eEEEEcCccccccCCCCCCCCCC
Q 012270 85 ---ASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVR-RLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 85 ---~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~-r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+|+|||+||... ..++++..+++|+.|+.++.+++. +.+.. ++|++||...+.
T Consensus 95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~----------- 163 (272)
T 2nwq_A 95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW----------- 163 (272)
T ss_dssp GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS-----------
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc-----------
Confidence 599999999532 124467789999999888777664 44666 999999987752
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++++++||.+.++........-.... . .... ...++
T Consensus 164 ----~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~---~--~~~~----~~~~~ 230 (272)
T 2nwq_A 164 ----PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARY---D--KTYA----GAHPI 230 (272)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------CCCCB
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHH---H--Hhhc----cCCCC
Confidence 1123468999999999999887654 58999999999998774321110000000 0 0000 01247
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++|+|++++.++.. .....|+.+.+.++
T Consensus 231 ~pedvA~~v~~l~s~----~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 231 QPEDIAETIFWIMNQ----PAHLNINSLEIMPV 259 (272)
T ss_dssp CHHHHHHHHHHHHTS----CTTEEEEEEEEEET
T ss_pred CHHHHHHHHHHHhCC----CccCccceEEEeec
Confidence 899999999998862 23345666666654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-19 Score=164.26 Aligned_cols=203 Identities=12% Similarity=0.075 Sum_probs=144.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ...++..+.+|++|++++.++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---l~~--~~~~~~~~~~Dv~~~~~~~~~~~~~ 78 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDE---LTA--AGAKVHVLELDVADRQGVDAAVAST 78 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHh--cCCcEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999999975411000000 000 12468889999999999887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|+|||+||... ..++++..+++|+.|+.++.+++.. .+ .++|++||...+.
T Consensus 79 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 147 (247)
T 2jah_A 79 VEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRV---------- 147 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTC----------
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcC----------
Confidence 6899999999432 2234567899999999999998764 35 7999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCcccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+..+...... ....... .. .++ ...
T Consensus 148 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~-~~----~~~----~~~ 213 (247)
T 2jah_A 148 -----NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMY-EQ----RIS----QIR 213 (247)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHH-HH----HTT----TSC
T ss_pred -----CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHH-Hh----ccc----ccC
Confidence 1123568999999999887776532 5899999999999877422111 1110000 00 011 112
Q ss_pred ccchhHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAE 239 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~ 239 (467)
++.++|+|++++.++.
T Consensus 214 ~~~pedvA~~v~~l~s 229 (247)
T 2jah_A 214 KLQAQDIAEAVRYAVT 229 (247)
T ss_dssp CBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC
Confidence 5889999999999987
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=168.22 Aligned_cols=198 Identities=11% Similarity=0.047 Sum_probs=142.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.++++++||||+|+||++++++|+++| ++|++++|+........+. +.... ...++.++.+|++|.+++.++++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDE---IMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHHHH---HHHHCTTSCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHHhccccCcceEEeccCCCHHHHHHHHHH
Confidence 457899999999999999999999999 5999999976421100000 00001 12568899999999999887765
Q ss_pred ------CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ------~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 150 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY---------- 150 (250)
T ss_dssp HHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC----------
Confidence 5899999999432 123456789999999999999874 34567999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..++||.+..+. ...... ......+
T Consensus 151 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~--------~~~~~~---------~~~~~~~ 208 (250)
T 3nyw_A 151 -----GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM--------AKKAGT---------PFKDEEM 208 (250)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH--------HHHTTC---------CSCGGGS
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch--------hhhcCC---------CcccccC
Confidence 1233578999999999988877643 48999999999885431 111111 1123468
Q ss_pred cchhHHHHHHHHHHH
Q 012270 225 TYVENVAHAHVCAAE 239 (467)
Q Consensus 225 i~v~Dva~a~~~al~ 239 (467)
++++|+|++++.++.
T Consensus 209 ~~p~dva~~v~~l~s 223 (250)
T 3nyw_A 209 IQPDDLLNTIRCLLN 223 (250)
T ss_dssp BCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHc
Confidence 899999999999986
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-19 Score=167.43 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=140.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|.||++++++|+++| ++|++++|+........+. +. ....++..+.+|++|++++.++++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 76 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATE---IR--DAGGTALAQVLDVTDRHSVAAFAQAAV 76 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HH--HTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976421000000 00 013467889999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... ..++++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 77 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~----------- 145 (264)
T 3tfo_A 77 DTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS----------- 145 (264)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc-----------
Confidence 6899999999432 2345678999999999988887754 3567999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+......|+.+|+..+.+.+.++.+. |+++.+++||.+..+........-. . .... .....+..+
T Consensus 146 ----~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~~~----~----~~~~--~~~~~~~~p 211 (264)
T 3tfo_A 146 ----VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEET----M----AAMD--TYRAIALQP 211 (264)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---------------------------------CCCH
T ss_pred ----cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccchhH----H----HHHH--hhhccCCCH
Confidence 12334689999999999988876543 8999999999997664322111000 0 0000 001124689
Q ss_pred hHHHHHHHHHHH
Q 012270 228 ENVAHAHVCAAE 239 (467)
Q Consensus 228 ~Dva~a~~~al~ 239 (467)
+|+|++++.++.
T Consensus 212 edvA~~v~~l~s 223 (264)
T 3tfo_A 212 ADIARAVRQVIE 223 (264)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999997
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=162.58 Aligned_cols=218 Identities=16% Similarity=0.080 Sum_probs=151.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.++++++||||+|.||++++++|+++| ++|++++|+........+......+. ....++.++.+|++|++++.++++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADG-ANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999999999 59999999875211100000000000 013468899999999999887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC
Q 012270 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||... ..++++..+++|+.++.++.+++... +..++|++||...+..
T Consensus 86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------- 158 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP------- 158 (285)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC-------
Confidence 6899999999432 22345678899999999999988765 5579999999866521
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
...+...|+.+|+..+.+.+.++.+ .|+++.+++||.+.. ... ........ ....
T Consensus 159 -------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~---t~~----~~~~~~~~--------~~~~ 216 (285)
T 3sc4_A 159 -------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVA---TAA----VQNLLGGD--------EAMA 216 (285)
T ss_dssp -------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBC---CHH----HHHHHTSC--------CCCT
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccc---cHH----HHhhcccc--------cccc
Confidence 1123478999999999998887644 589999999984321 111 11111111 1233
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
.+..++|+|++++.++.. .....|+.+.+.+
T Consensus 217 r~~~pedvA~~~~~l~s~----~~~~tG~~i~~dg 247 (285)
T 3sc4_A 217 RSRKPEVYADAAYVVLNK----PSSYTGNTLLCED 247 (285)
T ss_dssp TCBCTHHHHHHHHHHHTS----CTTCCSCEEEHHH
T ss_pred CCCCHHHHHHHHHHHhCC----cccccceEEEEcC
Confidence 567899999999999862 1135666665544
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=158.45 Aligned_cols=213 Identities=13% Similarity=0.077 Sum_probs=150.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
+|++++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|++++.++++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHE---LMQ-EQGVEVFYHHLDVSKAESVEEFSKKVL 75 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHCCCEEEEECCTTCHHHHHHHCC-HH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-hcCCeEEEEEeccCCHHHHHHHHHHHH
Confidence 36899999999999999999999999 5999999976421000000 000 113578899999999999988765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... +.++++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 76 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~------------ 143 (235)
T 3l77_A 76 ERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR------------ 143 (235)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS------------
T ss_pred HhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc------------
Confidence 6899999999432 23456789999999999999998653 335788888765541
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC-CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchh
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~-~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~ 228 (467)
+......|+.+|+..+.+.+.+.. ..|+++++++||.+-.+..... .. ......++.++
T Consensus 144 ---~~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~---------~~--------~~~~~~~~~p~ 203 (235)
T 3l77_A 144 ---LIPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK---------PG--------KPKEKGYLKPD 203 (235)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC---------SC--------CCGGGTCBCHH
T ss_pred ---cCCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc---------CC--------cccccCCCCHH
Confidence 112346899999999999888632 3589999999999866532211 00 11223678899
Q ss_pred HHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 229 Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
|+|++++.++... .....|+.....+++
T Consensus 204 dva~~v~~l~~~~---~~~~~~~~~~~~~~~ 231 (235)
T 3l77_A 204 EIAEAVRCLLKLP---KDVRVEELMLRSVYQ 231 (235)
T ss_dssp HHHHHHHHHHTSC---TTCCCCEEEECCTTS
T ss_pred HHHHHHHHHHcCC---CCCccceEEEeeccc
Confidence 9999999998731 122345555444433
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=165.66 Aligned_cols=221 Identities=12% Similarity=0.110 Sum_probs=156.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc-CCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.++++++||||+|.||++++++|+++| +.|++++ |+.......... +. ....++..+.+|++|.+++.++++.
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEAEETVYE---IQ--SNGGSAFSIGANLESLHGVEALYSS 78 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCSHHHHHHHHH---HH--HTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHH---HH--hcCCceEEEecCcCCHHHHHHHHHH
Confidence 356899999999999999999999999 5888864 433210000000 00 1134678899999999887776542
Q ss_pred -------------CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCC
Q 012270 85 -------------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 85 -------------~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~ 142 (467)
+|+|||+||... ..++++..+++|+.++.++++++... +..++|++||...+.
T Consensus 79 ~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~----- 153 (255)
T 3icc_A 79 LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----- 153 (255)
T ss_dssp HHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS-----
T ss_pred HHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc-----
Confidence 899999999432 22345678999999999999999876 345899999987762
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|+..+.+.+.++.+ .|+++.+++||.+..+...... +.+.......
T Consensus 154 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~-------- 215 (255)
T 3icc_A 154 ----------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTI-------- 215 (255)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHT--------
T ss_pred ----------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhcc--------
Confidence 1223568999999999988877643 5899999999999887544321 1112222111
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.....+.+++|+|++++.++.. ......|+.+++.++.
T Consensus 216 -~~~~~~~~~~dva~~~~~l~s~---~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 216 -SAFNRLGEVEDIADTAAFLASP---DSRWVTGQLIDVSGGS 253 (255)
T ss_dssp -STTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSST
T ss_pred -CCcCCCCCHHHHHHHHHHHhCc---ccCCccCCEEEecCCe
Confidence 1234577899999999988752 1245679999999874
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-19 Score=168.12 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=153.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+...... +.. ....++..+.+|++|++++.++++
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~-------~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLRE-------LEV-AHGGNAVGVVGDVRSLQDQKRAAERCL 74 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH-HTBTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHH-------HHH-HcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 599999997642110 000 013578899999999998877764
Q ss_pred ----CCCEEEEcccCCCCC------------CChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCC
Q 012270 84 ----GASTVFYVDATDLNT------------DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~~------------~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||..... ++++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 75 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 147 (281)
T 3zv4_A 75 AAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------- 147 (281)
T ss_dssp HHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS-------
T ss_pred HhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc-------
Confidence 579999999943210 125678899999999999988653 125999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc---HH-H------HHHHhcCCCce
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL---VP-L------LVNLAKPGWTK 212 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~~~---~~-~------~~~~~~~g~~~ 212 (467)
+..+...|+.+|+..+.+.+.++.+. ++++..+.||.+..+..... .. . +......
T Consensus 148 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---- 215 (281)
T 3zv4_A 148 --------PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS---- 215 (281)
T ss_dssp --------SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH----
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHh----
Confidence 22345689999999999988876432 39999999999987642210 00 0 1111111
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
......+..++|+|.+++.++.. .......|+++++.++.
T Consensus 216 -----~~p~~r~~~pedvA~~v~fL~s~--~~~~~itG~~i~vdGG~ 255 (281)
T 3zv4_A 216 -----VLPIGRMPALEEYTGAYVFFATR--GDSLPATGALLNYDGGM 255 (281)
T ss_dssp -----TCTTSSCCCGGGGSHHHHHHHST--TTSTTCSSCEEEESSSG
T ss_pred -----cCCCCCCCCHHHHHHHHHHhhcc--cccccccCcEEEECCCC
Confidence 11234577899999999988741 00223689999999874
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=159.43 Aligned_cols=190 Identities=14% Similarity=0.018 Sum_probs=139.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||+|+||++++++|+++| ++|++++|+...... ..... ..++..+.+|++|++++.++++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G-~~V~~~~r~~~~~~~-------~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 72 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERG-HQVSMMGRRYQRLQQ-------QELLL-GNAVIGIVADLAHHEDVDVAFAAAV 72 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHHH-GGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-cCCceEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599999997642110 00011 1258899999999999887765
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... ..++++..+++|+.|+.++++++... + .++|++||...+.
T Consensus 73 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~----------- 140 (235)
T 3l6e_A 73 EWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQV----------- 140 (235)
T ss_dssp HHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCS-----------
T ss_pred HhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcC-----------
Confidence 5899999999422 33556789999999999999888543 2 2999999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+..+...|+.+|+..+.+.+.++. ..|+++.+++||.+-.+.... .. . .....+.
T Consensus 141 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~----~----------~~~~~~~ 198 (235)
T 3l6e_A 141 ----GKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDN----TD----H----------VDPSGFM 198 (235)
T ss_dssp ----SCSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-----------------------------CB
T ss_pred ----CCCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhc----cC----C----------CCCcCCC
Confidence 112346899999999999887764 358999999999886553211 00 0 0112578
Q ss_pred chhHHHHHHHHHHH
Q 012270 226 YVENVAHAHVCAAE 239 (467)
Q Consensus 226 ~v~Dva~a~~~al~ 239 (467)
.++|+|++++.++.
T Consensus 199 ~pedvA~~v~~l~~ 212 (235)
T 3l6e_A 199 TPEDAAAYMLDALE 212 (235)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999999885
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=153.70 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=158.7
Q ss_pred CCCCCC--CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHH
Q 012270 1 MPFDEA--IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 1 m~~~~~--~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l 78 (467)
|.|.+. ++|+++||||++-||+++++.|.++| .+|.+.+|+.... +.....++..+.+|++|++++
T Consensus 2 M~f~~dlf~GK~alVTGas~GIG~aia~~la~~G-a~Vv~~~~~~~~~-----------~~~~~~~~~~~~~Dv~~~~~v 69 (242)
T 4b79_A 2 MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELG-AEVVALGLDADGV-----------HAPRHPRIRREELDITDSQRL 69 (242)
T ss_dssp CCBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTST-----------TSCCCTTEEEEECCTTCHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHH-----------hhhhcCCeEEEEecCCCHHHH
Confidence 555544 58999999999999999999999999 5999999976511 112345789999999999999
Q ss_pred HHHHh---CCCEEEEcccCCC-----CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCC
Q 012270 79 KKVLE---GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 79 ~~~~~---~~D~Vih~aa~~~-----~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+++++ ++|++||+||... +.++++..+++|+.|+..+.+++... +-.++|++||.....
T Consensus 70 ~~~~~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------- 139 (242)
T 4b79_A 70 QRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF---------- 139 (242)
T ss_dssp HHHHHHCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------
T ss_pred HHHHHhcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------
Confidence 88876 4899999999432 33557889999999999888876643 125899999986541
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.||.....+.+.++.+ +|+++..+-||.+--|...... +...+.+.+..| ..
T Consensus 140 -----~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~P---------lg 205 (242)
T 4b79_A 140 -----GSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTP---------LA 205 (242)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCT---------TC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCC---------CC
Confidence 1123468999999999887776532 6899999999999766432211 122233333222 22
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 206 R~g~peeiA~~v~fLaSd---~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 206 RWGEAPEVASAAAFLCGP---GASFVTGAVLAVDGG 238 (242)
T ss_dssp SCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCc---hhcCccCceEEECcc
Confidence 355689999999988741 134568899988876
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-19 Score=167.97 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=141.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|+++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|.+++.++++
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 101 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSH---CLE-LGAASAHYIAGTMEDMTFAEQFVAQAG 101 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH-hCCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999 5999999976411000000 000 011357889999999998887765
Q ss_pred ----CCCEEEEc-ccCCC------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYV-DATDL------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~-aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|+|||+ |+... ..+++...+++|+.|+.++++++... +..++|++||.+.+.
T Consensus 102 ~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------------ 169 (286)
T 1xu9_A 102 KLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV------------ 169 (286)
T ss_dssp HHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS------------
T ss_pred HHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc------------
Confidence 69999999 45321 12334678999999999999988653 246999999987652
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..|.+++.++.+ .++++++++||.+..+. .. ....+ .....+
T Consensus 170 ---~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~----~~----~~~~~---------~~~~~~ 229 (286)
T 1xu9_A 170 ---AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET----AM----KAVSG---------IVHMQA 229 (286)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH----HH----HHSCG---------GGGGGC
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh----HH----Hhccc---------cccCCC
Confidence 1134568999999999988776533 58999999999885432 11 11111 122467
Q ss_pred cchhHHHHHHHHHHH
Q 012270 225 TYVENVAHAHVCAAE 239 (467)
Q Consensus 225 i~v~Dva~a~~~al~ 239 (467)
++++|+|++++.+++
T Consensus 230 ~~~~~vA~~i~~~~~ 244 (286)
T 1xu9_A 230 APKEECALEIIKGGA 244 (286)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 899999999999987
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-19 Score=166.60 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=148.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh---cCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~---~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
++|+++||||+|+||++++++|++ +| ++|++++|+........+. +.......++.++.+|++|++++.++++
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G-~~V~~~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEE---LGAQQPDLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHH---HHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCC-CeEEEEeCCHHHHHHHHHH---HHhhCCCCeEEEEecCCCCHHHHHHHHH
Confidence 568899999999999999999999 89 5999999976411000000 0000012458889999999998877653
Q ss_pred ---------CCC--EEEEcccCCC----------CCCChhhHHHhhHHHHHHHHHHHHhCC------CCeEEEEcCcccc
Q 012270 84 ---------GAS--TVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACRECK------VRRLVYNSTADVV 136 (467)
Q Consensus 84 ---------~~D--~Vih~aa~~~----------~~~~~~~~~~~nv~g~~~ll~aa~~~~------v~r~v~~SS~~vy 136 (467)
++| +|||+||... ..++++..+++|+.|+.++++++...- ..++|++||...+
T Consensus 81 ~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~ 160 (259)
T 1oaa_A 81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160 (259)
T ss_dssp HHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred HHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc
Confidence 368 9999999431 224467799999999999999987642 3479999999776
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEe
Q 012270 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (467)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~ 215 (467)
. +..+...|+.+|+..+.+.+.++.+. ++++..+.||.+-.+ +...+.............
T Consensus 161 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~----~~~~~~~~~~~~~~~~~~ 221 (259)
T 1oaa_A 161 Q---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND----MQQLARETSKDPELRSKL 221 (259)
T ss_dssp S---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH----HHHHHHHHCSCHHHHHHH
T ss_pred C---------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcc----hHHHHhhccCChhHHHHH
Confidence 2 12345689999999999998886544 499999999887433 222111100000000000
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEE
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni 255 (467)
........+..++|+|++++.++.. .....|+.+++
T Consensus 222 ~~~~p~~~~~~p~dvA~~v~~l~~~----~~~itG~~i~v 257 (259)
T 1oaa_A 222 QKLKSDGALVDCGTSAQKLLGLLQK----DTFQSGAHVDF 257 (259)
T ss_dssp HHHHHTTCSBCHHHHHHHHHHHHHH----CCSCTTEEEET
T ss_pred HHhhhcCCcCCHHHHHHHHHHHHhh----ccccCCcEEec
Confidence 0000123577899999999988862 23456666654
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=165.48 Aligned_cols=220 Identities=10% Similarity=-0.000 Sum_probs=156.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc-CCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---------
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS--------- 76 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--------- 76 (467)
.+|+++||||+|.||++++++|+++| ++|++++ |+........+. +.. ....++.++.+|++|++
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSAT---LNA-RRPNSAITVQADLSNVATAPVSGADG 82 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---HHH-HSTTCEEEEECCCSSSCBCCCC----
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHH---Hhh-hcCCeeEEEEeecCCccccccccccc
Confidence 56899999999999999999999999 5999999 865311000000 000 01346889999999998
Q ss_pred --------HHHHHHh-------CCCEEEEcccCCC-------C--------------CCChhhHHHhhHHHHHHHHHHHH
Q 012270 77 --------QIKKVLE-------GASTVFYVDATDL-------N--------------TDDFYNCYMIIVQGAKNVVTACR 120 (467)
Q Consensus 77 --------~l~~~~~-------~~D~Vih~aa~~~-------~--------------~~~~~~~~~~nv~g~~~ll~aa~ 120 (467)
++.++++ ++|++||+||... . .++++..+++|+.++.++++++.
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8877765 6899999999432 1 23456789999999999999876
Q ss_pred h----CC------CCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeC
Q 012270 121 E----CK------VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRP 187 (467)
Q Consensus 121 ~----~~------v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp 187 (467)
. .+ ..++|++||...+. +..+...|+.+|+..+.+.+.++.+ .|++++.++|
T Consensus 163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~P 227 (291)
T 1e7w_A 163 HRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 227 (291)
T ss_dssp HHHHTSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHHHhcCCCCCCCCcEEEEEechhhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEee
Confidence 3 34 57999999987652 1234568999999999988877543 5899999999
Q ss_pred CCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc-cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 188 ~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~-~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
|.+..+. . .-+.......... ... .+..++|+|++++.++.. ......|+.+++.++..
T Consensus 228 G~v~T~~-~-~~~~~~~~~~~~~---------p~~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 228 GLSVLVD-D-MPPAVWEGHRSKV---------PLYQRDSSAAEVSDVVIFLCSS---KAKYITGTCVKVDGGYS 287 (291)
T ss_dssp SSBCCGG-G-SCHHHHHHHHTTC---------TTTTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCccCCc-c-CCHHHHHHHHhhC---------CCCCCCCCHHHHHHHHHHHhCC---cccCccCcEEEECCCcc
Confidence 9987664 2 1122222222211 112 467899999999998852 12346788999988743
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=160.61 Aligned_cols=209 Identities=12% Similarity=0.064 Sum_probs=148.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecC--CCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +. ....++..++.+|+ .|.+++.++++
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~~~~~d~d~~~~~~~~~~~~~ 87 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEASLAEVSDQ---IK-SAGQPQPLIIALNLENATAQQYRELAAR 87 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH-HTTSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEecCHHHHHHHHHH---HH-hcCCCCceEEEeccccCCHHHHHHHHHH
Confidence 46899999999999999999999999 5999999976421100000 00 01124567777877 88888776654
Q ss_pred ------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... ..++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------- 159 (247)
T 3i1j_A 88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK-------- 159 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS--------
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC--------
Confidence 6899999999532 22456778999999999999998 445667999999987652
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+..+...|+.+|+..|.+.+.++.+ .|+++..++||.+-.+ +....... ...
T Consensus 160 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~--------~~~~~~~~---------~~~ 215 (247)
T 3i1j_A 160 -------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG--------MRAQAYPD---------ENP 215 (247)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH--------HHHHHSTT---------SCG
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc--------cchhcccc---------cCc
Confidence 2234568999999999988876533 5899999999888433 11111111 122
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEE
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni 255 (467)
..+..++|+|++++.++.. ......|+.+++
T Consensus 216 ~~~~~p~dva~~~~~l~s~---~~~~itG~~i~~ 246 (247)
T 3i1j_A 216 LNNPAPEDIMPVYLYLMGP---DSTGINGQALNA 246 (247)
T ss_dssp GGSCCGGGGTHHHHHHHSG---GGTTCCSCEEEC
T ss_pred cCCCCHHHHHHHHHHHhCc---hhccccCeeecC
Confidence 3567799999999988851 123456776654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=163.33 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=146.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH----Hh
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV----LE 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~----~~ 83 (467)
||+++||||+|+||++++++|+++| ++|++++|+........+ +.. ...++..+ |..+.+++.+. +.
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~----l~~--~~~~~~~~--d~~~v~~~~~~~~~~~g 71 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQKDELEA----FAE--TYPQLKPM--SEQEPAELIEAVTSAYG 71 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSHHHHHH----HHH--HCTTSEEC--CCCSHHHHHHHHHHHHS
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----HHh--cCCcEEEE--CHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 599999987642100000 000 01233333 66655443322 23
Q ss_pred CCCEEEEcccCC-C-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 ~~D~Vih~aa~~-~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|+|||+||.. . ..++++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 72 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 137 (254)
T 1zmt_A 72 QVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG-------------- 137 (254)
T ss_dssp CCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS--------------
T ss_pred CCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc--------------
Confidence 699999999954 2 123457789999999999998875 34567999999987762
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCccccccch
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+..+...|+.+|...+.+.+.++.+ .|+++++++||.++||....+. ..+.... ...............+.++
T Consensus 138 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~--~~~~~~~~~~~p~~~~~~p 214 (254)
T 1zmt_A 138 -PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTN--PEHVAHVKKVTALQRLGTQ 214 (254)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTC--HHHHHHHHHHSSSSSCBCH
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccC--hHHHHHHhccCCCCCCcCH
Confidence 1124568999999999998877543 4899999999999988654321 1111000 0000000000112247789
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+|+|++++.++... .....|+.+++.++.
T Consensus 215 ~dvA~~v~~l~s~~---~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 215 KELGELVAFLASGS---CDYLTGQVFWLAGGF 243 (254)
T ss_dssp HHHHHHHHHHHTTS---CGGGTTCEEEESTTC
T ss_pred HHHHHHHHHHhCcc---cCCccCCEEEECCCc
Confidence 99999999887621 234578999998874
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=153.87 Aligned_cols=209 Identities=13% Similarity=0.132 Sum_probs=153.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
|.|+++||||++-||+++++.|+++| ++|.+.+|+...... .. ...+++..+.+|++|+++++++++
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~-------~~--~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 70 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAG-DKVCFIDIDEKRSAD-------FA--KERPNLFYFHGDVADPLTLKKFVEYAM 70 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HH--TTCTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH-------HH--HhcCCEEEEEecCCCHHHHHHHHHHHH
Confidence 35899999999999999999999999 599999997642110 01 123578899999999999887654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... ..++++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 71 ~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~------------ 138 (247)
T 3ged_A 71 EKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ------------ 138 (247)
T ss_dssp HHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc------------
Confidence 5899999998322 34567889999999999888877543 226999999987651
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~--~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+......|+.+|+..+.+.+.++.+ .++++..+-||.+--+....+....... .| ..-+..+
T Consensus 139 ---~~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~~~~~~~----~P---------l~R~g~p 202 (247)
T 3ged_A 139 ---SEPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFTQEDCAA----IP---------AGKVGTP 202 (247)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CCHHHHHT----ST---------TSSCBCH
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHHHHHHhc----CC---------CCCCcCH
Confidence 1123468999999988887766532 2799999999998665544333333221 11 1235568
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+|+|.+++.++. .+-..|+++.+.++
T Consensus 203 ediA~~v~fL~s-----~~~iTG~~i~VDGG 228 (247)
T 3ged_A 203 KDISNMVLFLCQ-----QDFITGETIIVDGG 228 (247)
T ss_dssp HHHHHHHHHHHH-----CSSCCSCEEEESTT
T ss_pred HHHHHHHHHHHh-----CCCCCCCeEEECcC
Confidence 999999999887 45678999999887
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-17 Score=159.76 Aligned_cols=216 Identities=17% Similarity=0.102 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC--cCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+++++||||+|.||++++++|+++| ++|++++|+...............+ .....++.++.+|++|++++.++++
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~G-a~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDG-ANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCC-CEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46789999999999999999999999 5999999987521110000000000 0113468889999999999888775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|+|||+||... ..++++..+++|+.++.++++++. +.+..++|++||...+...
T Consensus 123 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~------- 195 (346)
T 3kvo_A 123 AIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV------- 195 (346)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC-------
Confidence 6899999999422 224457799999999999999984 4466799999998765210
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~--~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++..+.|+.+... . +....... .....+
T Consensus 196 ------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T---~----~~~~~~~~---------~~~~r~ 253 (346)
T 3kvo_A 196 ------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT---A----AMDMLGGP---------GIESQC 253 (346)
T ss_dssp ------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC---H----HHHHHCC-----------CGGGC
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc---H----HHHhhccc---------cccccC
Confidence 1234578999999999988887654 4799999999863322 1 12222111 123456
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
..++|+|++++.++.. .....|+.+ +.+
T Consensus 254 ~~pedvA~~v~~L~s~----~~~itG~~i-vdg 281 (346)
T 3kvo_A 254 RKVDIIADAAYSIFQK----PKSFTGNFV-IDE 281 (346)
T ss_dssp BCTHHHHHHHHHHHTS----CTTCCSCEE-EHH
T ss_pred CCHHHHHHHHHHHHhc----CCCCCceEE-ECC
Confidence 7899999999999862 123567655 555
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=158.93 Aligned_cols=203 Identities=13% Similarity=0.046 Sum_probs=140.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +.. .....+..+.+|++|++++.++++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 106 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLDAAAGE---IGG-RTGNIVRAVVCDVGDPDQVAALFAAVR 106 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHh-cCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999 5999999976421000000 000 011235889999999999887765
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC----C--CCeEEEEcCccccccCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----K--VRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~----~--v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|+|||+||... ..++++..+++|+.++.++.+++... + -.++|++||...+.
T Consensus 107 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------- 178 (281)
T 4dry_A 107 AEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT-------- 178 (281)
T ss_dssp HHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC--------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC--------
Confidence 5799999999432 23446679999999988888876543 2 45899999987652
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+..+...|+.+|+..+.+.+.++.+ +|+++.+++||.+..+.... +........ ......
T Consensus 179 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~------~~~~~~ 241 (281)
T 4dry_A 179 -------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTAR----MSTGVLQAN------GEVAAE 241 (281)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-----------CEEECTT------SCEEEC
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhh----hcchhhhhh------hccccc
Confidence 2234578999999999998877643 68999999999987653221 110000000 001123
Q ss_pred cccchhHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~ 239 (467)
.++.++|+|++++.++.
T Consensus 242 ~~~~pedvA~~v~fL~s 258 (281)
T 4dry_A 242 PTIPIEHIAEAVVYMAS 258 (281)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 47889999999999987
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=158.57 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=138.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++++++||||+|+||++++++|+++| ++|++++|+........+. +.. ...++.++.+|++|++++.++++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQE---AQS--LGGQCVPVVCDSSQESEVRSLFEQVD 77 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH--HSSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHH--cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5999999875411000000 000 02357889999999998876653
Q ss_pred -----CCCEEEEccc--CC------------CCCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCC
Q 012270 84 -----GASTVFYVDA--TD------------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGS 140 (467)
Q Consensus 84 -----~~D~Vih~aa--~~------------~~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~ 140 (467)
++|++||+|| .. ...+++...+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 78 ~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 154 (260)
T 2qq5_A 78 REQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQ--- 154 (260)
T ss_dssp HHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTS---
T ss_pred HhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcC---
Confidence 4799999994 11 1234466788999999877776654 45678999999987751
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
..+...|+.+|+..|.+.+.++. .+|+++++++||.+..+........-. ...........
T Consensus 155 -------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~~- 218 (260)
T 2qq5_A 155 -------------YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEE--VLQDPVLKQFK- 218 (260)
T ss_dssp -------------CCSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC----------------------
T ss_pred -------------CCCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhcccc--ccchhHHHHHH-
Confidence 12346899999999999888763 358999999999998775322111000 00000000000
Q ss_pred CCccccccchhHHHHHHHHHHH
Q 012270 218 GENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~ 239 (467)
.....+..++|+|++++.++.
T Consensus 219 -~~~~~~~~pe~va~~v~~l~s 239 (260)
T 2qq5_A 219 -SAFSSAETTELSGKCVVALAT 239 (260)
T ss_dssp ----CHHHHHHHHHHHHHHHHT
T ss_pred -hhhccCCCHHHHHHHHHHHhc
Confidence 011124679999999998885
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=156.55 Aligned_cols=213 Identities=14% Similarity=0.141 Sum_probs=147.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++||||+|.||++++++|+++| ++|++++|+........+........ ....++.++.+|++|++++.++++
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDG-ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999999999 59999999875211110000000000 013468889999999999887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... ..++++..+++|+.++.++.+++.. .+..++|++||...+...
T Consensus 84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 156 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA------- 156 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH-------
T ss_pred HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-------
Confidence 6899999999432 2244577899999999999998754 456799999998765210
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++.++.||.+.... +. . ... +.....
T Consensus 157 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~---~~----~-~~~---------~~~~~~ 213 (274)
T 3e03_A 157 ------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD---AI----N-MLP---------GVDAAA 213 (274)
T ss_dssp ------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------------CCCGGG
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc---hh----h-hcc---------cccccc
Confidence 0134568999999999988877643 58999999998533221 11 0 001 112234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEE
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAF 253 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~y 253 (467)
+..++|+|++++.++.. ......|+.+
T Consensus 214 ~~~pedvA~~v~~l~s~---~~~~itG~~i 240 (274)
T 3e03_A 214 CRRPEIMADAAHAVLTR---EAAGFHGQFL 240 (274)
T ss_dssp SBCTHHHHHHHHHHHTS---CCTTCCSCEE
T ss_pred cCCHHHHHHHHHHHhCc---cccccCCeEE
Confidence 77899999999998862 1233467666
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-18 Score=160.57 Aligned_cols=216 Identities=11% Similarity=0.011 Sum_probs=151.5
Q ss_pred CCCEEEEEcC--CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGa--tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++|||| +|+||++++++|+++| ++|++++|+..... +. ..+.. ..++.++.+|++|++++.++++
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G-~~V~~~~r~~~~~~---~~---~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 77 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLI---QR---ITDRL-PAKAPLLELDVQNEEHLASLAGR 77 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEECSCHHHH---HH---HHTTS-SSCCCEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecChHHHH---HH---HHHhc-CCCceEEEccCCCHHHHHHHHHH
Confidence 5689999999 9999999999999999 59999999764110 00 00111 2357889999999999887776
Q ss_pred ---------CCCEEEEcccCCC------------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCC
Q 012270 84 ---------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGS 140 (467)
Q Consensus 84 ---------~~D~Vih~aa~~~------------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~ 140 (467)
++|+|||+||... ..++++..+++|+.++.++++++...- -.++|++||...+
T Consensus 78 ~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~---- 153 (269)
T 2h7i_A 78 VTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR---- 153 (269)
T ss_dssp HHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS----
T ss_pred HHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccc----
Confidence 7899999999432 123456789999999999999997641 2489999987543
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-----HH-------HHHH
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----PL-------LVNL 205 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~-----~~-------~~~~ 205 (467)
+......|+.+|+..+.+.+.++.+ .|+++++++||.+..+...... .. +...
T Consensus 154 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (269)
T 2h7i_A 154 ------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEG 221 (269)
T ss_dssp ------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred ------------ccCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHh
Confidence 1123468999999999988877543 5899999999988554210000 00 0011
Q ss_pred hcCCCceEEecCCCccc-cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 206 AKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 206 ~~~g~~~~~~g~g~~~~-~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..... ... .+..++|+|++++.++.. ......|+.+++.++
T Consensus 222 ~~~~~---------p~~rr~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG 263 (269)
T 2h7i_A 222 WDQRA---------PIGWNMKDATPVAKTVCALLSD---WLPATTGDIIYADGG 263 (269)
T ss_dssp HHHHC---------TTCCCTTCCHHHHHHHHHHHSS---SCTTCCSEEEEESTT
T ss_pred hhccC---------CcccCCCCHHHHHHHHHHHhCc---hhccCcceEEEecCC
Confidence 11100 111 367789999999988851 123467889998886
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=160.74 Aligned_cols=203 Identities=19% Similarity=0.091 Sum_probs=139.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH-HHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~-- 83 (467)
.+++++||||+|+||++++++|+++| ++|++++|+........+. +.. ....++.++.+|++|+ +++.++++
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~---l~~-~~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEK---LKN-SNHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHT-TTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH---HHh-cCCCceEEEEccCCCcHHHHHHHHHHH
Confidence 45789999999999999999999999 5999999986421100000 111 1224689999999997 77666554
Q ss_pred -----CCCEEEEcccCCC-------------------------------------CCCChhhHHHhhHHHHHHHHHHHHh
Q 012270 84 -----GASTVFYVDATDL-------------------------------------NTDDFYNCYMIIVQGAKNVVTACRE 121 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------------------------------------~~~~~~~~~~~nv~g~~~ll~aa~~ 121 (467)
++|+|||+||... ..++++..+++|+.|+.++++++..
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 6999999999542 1223456799999999998888753
Q ss_pred ----CCCCeEEEEcCccccccCCCC-----------------------------CCCCCCCcccCCCCCChHHHHHHHHH
Q 012270 122 ----CKVRRLVYNSTADVVFDGSHD-----------------------------IHNGDETLTCCWKFQDLMCDLKAQAE 168 (467)
Q Consensus 122 ----~~v~r~v~~SS~~vyg~~~~~-----------------------------~~~~~E~~p~~~~~~~~Y~~sK~~~E 168 (467)
.+..|+|++||...+...... .....+... .+.+...|+.||+..+
T Consensus 166 ~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 166 LLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNG-WPSFGAAYTTSKACLN 244 (311)
T ss_dssp HHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTT-CCSSCHHHHHHHHHHH
T ss_pred hhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcccccccc-CcccchhhHHHHHHHH
Confidence 456799999998765321000 000000000 1124468999999999
Q ss_pred HHHHhhcCCC-CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 169 ALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 169 ~~v~~~~~~~-g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
.+.+.++.+. +++++.+.||.|..+.... ......++.|+.++.++.
T Consensus 245 ~~~~~la~e~~~i~v~~v~PG~v~T~~~~~------------------------~~~~~~~~~a~~~~~~~~ 292 (311)
T 3o26_A 245 AYTRVLANKIPKFQVNCVCPGLVKTEMNYG------------------------IGNYTAEEGAEHVVRIAL 292 (311)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSBCSGGGTT------------------------CCSBCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCceEEEecCCceecCCcCC------------------------CCCCCHHHHHHHHHHHHh
Confidence 9999887654 6999999999986553111 012357889998888765
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.8e-17 Score=166.46 Aligned_cols=202 Identities=20% Similarity=0.126 Sum_probs=145.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA- 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 85 (467)
.++++|||||+|+||.++++.|+++|+..|++++|+........+....+. ....++.++.+|++|++++.++++++
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~--~~g~~v~~~~~Dv~d~~~v~~~~~~i~ 302 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE--ALGARTTVAACDVTDRESVRELLGGIG 302 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHH--HTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHH--hcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999995359999997641100000000000 01246888999999999999998865
Q ss_pred -----CEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 86 -----STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 86 -----D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
|+|||+||... ..++....+++|+.|+.++.++++..+.++||++||.+.+..
T Consensus 303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g--------------- 367 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG--------------- 367 (486)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC---------------
T ss_pred hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCC---------------
Confidence 99999999533 223456788999999999999999988999999999865421
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHH
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a 233 (467)
......|+.+|...+.+.+.... .|+++++++|+.+.+++... ...... . ......+++++|++++
T Consensus 368 ~~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~--~~~~~~---------~--~~~g~~~i~~e~~a~~ 433 (486)
T 2fr1_A 368 APGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE--GPVADR---------F--RRHGVIEMPPETACRA 433 (486)
T ss_dssp CTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-----------------------C--TTTTEECBCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccc--hhHHHH---------H--HhcCCCCCCHHHHHHH
Confidence 12346899999999998877654 68999999999998764211 000000 0 0122467899999999
Q ss_pred HHHHHH
Q 012270 234 HVCAAE 239 (467)
Q Consensus 234 ~~~al~ 239 (467)
+..+++
T Consensus 434 l~~~l~ 439 (486)
T 2fr1_A 434 LQNALD 439 (486)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999997
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=166.17 Aligned_cols=224 Identities=15% Similarity=0.054 Sum_probs=156.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
.++++|||||+|+||.++++.|.++|+..|++++|+........+....+. ....++.++.+|++|.+++.+++++
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~--~~g~~v~~~~~Dvtd~~~v~~~~~~~~ 335 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELR--GHGCEVVHAACDVAERDALAALVTAYP 335 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHH--TTTCEEEEEECCSSCHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHH--hcCCEEEEEEeCCCCHHHHHHHHhcCC
Confidence 468999999999999999999999995368999887631110000000000 0124588899999999999999976
Q ss_pred CCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCCCCCCCCCCcccCCCC
Q 012270 85 ASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (467)
Q Consensus 85 ~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~ 156 (467)
+|+|||+||.... .++.+..+++|+.|+.++.+++... +.++||++||.+.+. ....
T Consensus 336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~---------------g~~g 400 (511)
T 2z5l_A 336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTW---------------GNAG 400 (511)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTT---------------CCTT
T ss_pred CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcC---------------CCCC
Confidence 9999999995432 2345678899999999999999887 788999999985531 1123
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
...|+.+|...|.+.+.... .|+++++++||.+-+.+...... ..... .....+++++|+++++..
T Consensus 401 ~~~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~~~--~~~~~-----------~~g~~~l~~e~~a~~l~~ 466 (511)
T 2z5l_A 401 QGAYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAGAG--EESLS-----------RRGLRAMDPDAAVDALLG 466 (511)
T ss_dssp BHHHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCCHH--HHHHH-----------HHTBCCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccccc--HHHHH-----------hcCCCCCCHHHHHHHHHH
Confidence 46899999999999987754 79999999999884333221111 11111 011357889999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~ 272 (467)
++.. +. . .+.+. .+.+..+...+..
T Consensus 467 al~~-----~~--~-~v~v~---~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 467 AMGR-----ND--V-CVTVV---DVDWERFAPATNA 491 (511)
T ss_dssp HHHH-----TC--S-EEEEC---CBCHHHHHHHHHH
T ss_pred HHhC-----CC--C-EEEEE---eCCHHHHHhhhcc
Confidence 9973 21 1 23333 3567666665544
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-16 Score=145.51 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=150.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||++-||+++++.|.++| ++|.+.+|+.... ..+...+.+|++|+++++++++
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~---------------~~~~~~~~~Dv~~~~~v~~~~~~ 71 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELG-AQVLTTARARPEG---------------LPEELFVEADLTTKEGCAIVAEA 71 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTT-CEEEEEESSCCTT---------------SCTTTEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcC-CEEEEEECCchhC---------------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 4567999999999999999999999999 5999999965411 1123468899999998877654
Q ss_pred ------CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... +.++++..+++|+.++.++.+++.. .+-.++|++||......
T Consensus 72 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------ 145 (261)
T 4h15_A 72 TRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------ 145 (261)
T ss_dssp HHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------
T ss_pred HHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC------
Confidence 4899999998321 2245678999999999888777653 35568999999865410
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHH--------------HHHhc
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLL--------------VNLAK 207 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~--------------~~~~~ 207 (467)
.+.....|+.+|+..+.+.+.++.+ +|+++..+.||.+--|......... .....
T Consensus 146 --------~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (261)
T 4h15_A 146 --------LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGL 217 (261)
T ss_dssp --------CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHh
Confidence 0123467999999999887776533 6899999999988543211111111 11111
Q ss_pred CCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 208 ~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
... +..-+..++|+|.+++.++.. ...-..|+.+.+.++
T Consensus 218 ~~~---------PlgR~g~peevA~~v~fLaS~---~a~~itG~~i~VDGG 256 (261)
T 4h15_A 218 GGI---------PLGRPAKPEEVANLIAFLASD---RAASITGAEYTIDGG 256 (261)
T ss_dssp TCC---------TTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred cCC---------CCCCCcCHHHHHHHHHHHhCc---hhcCccCcEEEECCc
Confidence 111 223466799999999988741 134568999999886
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=158.17 Aligned_cols=168 Identities=16% Similarity=0.114 Sum_probs=126.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC----cCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD----SLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
+++++||||+|+||++++++|+++|+ +|++++|.........+. +.. .....++..+.+|++|.+++.++++
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRL---WEAARALACPPGSLETLQLDVRDSKSVAAARE 77 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHH---HHHHHHTTCCTTSEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHH---HHHhhhccCCCCceEEEEecCCCHHHHHHHHH
Confidence 57899999999999999999999994 788877754311000000 000 0112468899999999999999987
Q ss_pred C-----CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 G-----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ~-----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
. +|+|||+||... ..++++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 78 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~---------- 147 (327)
T 1jtv_A 78 RVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM---------- 147 (327)
T ss_dssp TCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS----------
T ss_pred HHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc----------
Confidence 5 899999998432 22346789999999999999986 345678999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG 194 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~ 194 (467)
+......|+.||+..|.+.+.++. ..|+++++++||.+..+.
T Consensus 148 -----~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 -----GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 112346899999999999888765 368999999999998764
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-17 Score=163.84 Aligned_cols=217 Identities=12% Similarity=0.027 Sum_probs=152.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+++++||||+|.||.++++.|.++| .+|++++|+.... . +.......++.++.+|++|.+++.++++
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~G-a~Vvl~~r~~~~~-----~---l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDG-ATVVAIDVDGAAE-----D---LKRVADKVGGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECGGGHH-----H---HHHHHHHHTCEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCC-CEEEEEeCCccHH-----H---HHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5899998864310 0 1111112256789999999998887764
Q ss_pred ----C-CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----G-ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~-~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+ +|+|||+||... +.++++..+++|+.|+.++.+++... +..+||++||.+.+.
T Consensus 283 ~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~---------- 352 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA---------- 352 (454)
T ss_dssp HHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH----------
T ss_pred HHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC----------
Confidence 3 899999999432 23446788999999999999999876 567999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
.......|+.+|...+.+.+.++. ..|++++++.||.+..+................ .....+
T Consensus 353 -----g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~~l~r~ 418 (454)
T 3u0b_A 353 -----GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRRL---------NSLFQG 418 (454)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHHS---------BTTSSC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHhh---------ccccCC
Confidence 113456899999977777666542 268999999999997764322111000000000 112345
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..++|+|++++.++.. ......|+++++.++.
T Consensus 419 g~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 419 GQPVDVAELIAYFASP---ASNAVTGNTIRVCGQA 450 (454)
T ss_dssp BCHHHHHHHHHHHHCG---GGTTCCSCEEEESSSB
T ss_pred CCHHHHHHHHHHHhCC---ccCCCCCcEEEECCcc
Confidence 6789999999988752 1245689999998863
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=152.06 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=143.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccC---CCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQL---DPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
..+|+++||||+|+||++++++|+++| ++|++.++...... ...... .........+. ...+|+.|.+++.+++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G-a~Vv~~~~~~~~~~~~R~~~~~~-~~~~~l~~~~~-~~~~D~~~~~~~~~~~ 83 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAAD-KVVEEIRRRGG-KAVANYDSVEAGEKLV 83 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHH-HHHHHHHHTTC-EEEEECCCGGGHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCcccccccCCHHHHH-HHHHHHHhhCC-eEEEeCCCHHHHHHHH
Confidence 356899999999999999999999999 59999877532100 000000 00000000111 2358999988766554
Q ss_pred h-------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCC
Q 012270 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
+ ++|+|||+||... ..++++..+++|+.|+.++.+++. +.+..|+|++||.+.+. +
T Consensus 84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~-~----- 157 (319)
T 1gz6_A 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY-G----- 157 (319)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-C-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc-C-----
Confidence 3 5899999999432 224467899999999999988874 44677999999975431 1
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
..+...|+.+|...+.+.+.++.+ .|+++++++|+.+ .+...... +...
T Consensus 158 ---------~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~------------------~~~~ 209 (319)
T 1gz6_A 158 ---------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVM------------------PEDL 209 (319)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGS------------------CHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccC------------------Chhh
Confidence 123468999999999988877543 5899999999876 32111100 0112
Q ss_pred ccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..++.++|+|.+++.++.. .....|+.|++.++
T Consensus 210 ~~~~~p~dvA~~~~~l~s~----~~~~tG~~~~v~GG 242 (319)
T 1gz6_A 210 VEALKPEYVAPLVLWLCHE----SCEENGGLFEVGAG 242 (319)
T ss_dssp HHHSCGGGTHHHHHHHTST----TCCCCSCEEEEETT
T ss_pred hccCCHHHHHHHHHHHhCc----hhhcCCCEEEECCC
Confidence 3467899999999988752 22357889999886
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=144.90 Aligned_cols=224 Identities=12% Similarity=-0.009 Sum_probs=155.5
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 3 ~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
+.+.++|+++||||++-||+++++.|.++| ..|.+.+|+........++ +. ....++..+.+|++|++++++++
T Consensus 2 y~sL~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~~~~~~~~---i~--~~g~~~~~~~~Dvt~~~~v~~~~ 75 (254)
T 4fn4_A 2 YQSLKNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDRLNQIVQE---LR--GMGKEVLGVKADVSKKKDVEEFV 75 (254)
T ss_dssp CGGGTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEccCCCHHHHHHHH
Confidence 344578999999999999999999999999 5999999976421100000 11 12356889999999999988776
Q ss_pred h-------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCC
Q 012270 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~ 143 (467)
+ +.|++||+||... +.++++..+++|+.|+.++.+++.. .+-.++|++||.+...
T Consensus 76 ~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~------ 149 (254)
T 4fn4_A 76 RRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR------ 149 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC------
T ss_pred HHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC------
Confidence 4 5899999999321 2345788999999999888877654 3556899999986541
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEecC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~---~~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|+....+.+.++.+ +|+++..+-||.+--|..... -...........+
T Consensus 150 ---------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~------ 214 (254)
T 4fn4_A 150 ---------GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS------ 214 (254)
T ss_dssp ---------SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT------
T ss_pred ---------CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC------
Confidence 1123468999999988887776533 689999999999876532110 0111111111000
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...-+..++|+|.+++.++.. ...-..|+.+.+.++
T Consensus 215 --~~~R~g~pediA~~v~fLaSd---~a~~iTG~~i~VDGG 250 (254)
T 4fn4_A 215 --LSSRLAEPEDIANVIVFLASD---EASFVNGDAVVVDGG 250 (254)
T ss_dssp --TCCCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred --CCCCCcCHHHHHHHHHHHhCc---hhcCCcCCEEEeCCC
Confidence 011345689999999988741 124468999988876
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=149.44 Aligned_cols=221 Identities=12% Similarity=0.072 Sum_probs=155.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||++-||+++++.|.++| .+|.+.+|+........++ +. ....++..+.+|++|+++++++++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~---l~--~~g~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDIRATLLAESVDT---LT--RKGYDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHH---HH--HTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 3468999999999999999999999999 5999999976421100000 11 113568889999999999887764
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh-----CCCCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~-----~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||... +.++++..+++|+.|+..+.+++.. .+-.++|++||.....
T Consensus 80 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-------- 151 (255)
T 4g81_D 80 LDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-------- 151 (255)
T ss_dssp HHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------
T ss_pred HHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC--------
Confidence 4799999999322 3466788999999999998887643 2345899999987641
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+......|+.+|...+.+.+.++.+ +|+++..+-||.+..|...... +.+...+.+..|
T Consensus 152 -------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~P--------- 215 (255)
T 4g81_D 152 -------ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTP--------- 215 (255)
T ss_dssp -------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHST---------
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCC---------
Confidence 1123468999999999887776532 6899999999998655321111 112222222222
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 216 l~R~g~pediA~~v~fL~S~---~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 216 SQRWGRPEELIGTAIFLSSK---ASDYINGQIIYVDGG 250 (255)
T ss_dssp TCSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCc---hhCCCcCCEEEECCC
Confidence 12355689999999987741 134568999988876
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=144.29 Aligned_cols=225 Identities=17% Similarity=0.127 Sum_probs=157.3
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.+ ..++|+++||||++-||+++++.|.++| ..|.+.+|+....... +. + .....++..+.+|++|++++++
T Consensus 1 M~~-~L~gKvalVTGas~GIG~aia~~la~~G-a~Vv~~~r~~~~~~~~-~~---~--~~~~~~~~~~~~Dv~~~~~v~~ 72 (258)
T 4gkb_A 1 MDL-NLQDKVVIVTGGASGIGGAISMRLAEER-AIPVVFARHAPDGAFL-DA---L--AQRQPRATYLPVELQDDAQCRD 72 (258)
T ss_dssp CCC-CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCCHHHH-HH---H--HHHCTTCEEEECCTTCHHHHHH
T ss_pred CCC-CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCcccHHHH-HH---H--HhcCCCEEEEEeecCCHHHHHH
Confidence 554 3578999999999999999999999999 5999999976521000 00 0 0123578899999999998876
Q ss_pred HHh-------CCCEEEEcccCC------CCCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCC
Q 012270 81 VLE-------GASTVFYVDATD------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 81 ~~~-------~~D~Vih~aa~~------~~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
+++ ++|++||+||.. ...+++...+++|+.++..+.+++... +-.++|++||...+.
T Consensus 73 ~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~------- 145 (258)
T 4gkb_A 73 AVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT------- 145 (258)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH-------
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc-------
Confidence 654 589999999942 233557889999999999988877643 225899999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHH------HHHHhcCCCceEEe
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPL------LVNLAKPGWTKFII 215 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~------~~~~~~~g~~~~~~ 215 (467)
+......|+.+|+..+.+.+.++. .+|+++..+-||.+--|........ .........|+
T Consensus 146 --------~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--- 214 (258)
T 4gkb_A 146 --------GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL--- 214 (258)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT---
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC---
Confidence 112346899999999988877753 2689999999999976643322111 11112221110
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 216 g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++-
T Consensus 215 -----g~R~g~peeiA~~v~fLaS~---~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 215 -----GRRFTTPDEIADTAVFLLSP---RASHTTGEWLFVDGGY 250 (258)
T ss_dssp -----TTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred -----CCCCcCHHHHHHHHHHHhCc---hhcCccCCeEEECCCc
Confidence 02466789999999988741 1345689999998873
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=149.25 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=141.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-c--CCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH--
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-D--STQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL-- 82 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~-- 82 (467)
+|+++||||+|+||++++++|+++| ++|+++ + |++..... ..+.. .+.+.. |..+.+++.+.+
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~r~~~~~~~-------~~~~~--~~~~~~--~~~~v~~~~~~~~~ 68 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG-YTVVCHDASFADAAERQR-------FESEN--PGTIAL--AEQKPERLVDATLQ 68 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSHHHHHH-------HHHHS--TTEEEC--CCCCGGGHHHHHGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCcCCHHHHHH-------HHHHh--CCCccc--CHHHHHHHHHHHHH
Confidence 4789999999999999999999999 599999 6 86531100 00001 122222 554444433322
Q ss_pred --hCCCEEEEcccCCCC----------CCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 83 --EGASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 83 --~~~D~Vih~aa~~~~----------~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
.++|+|||+||.... .++++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 69 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------- 139 (244)
T 1zmo_A 69 HGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK--------- 139 (244)
T ss_dssp GSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC---------
Confidence 258999999994322 23456799999999999988875 45667999999987762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC---CCcH-HHHHHHhcCCCceEEecCCC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD---TQLV-PLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~---~~~~-~~~~~~~~~g~~~~~~g~g~ 219 (467)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+-.+.. .... +.......... .
T Consensus 140 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--------~ 205 (244)
T 1zmo_A 140 ------PLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRD--------V 205 (244)
T ss_dssp ------CCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHH--------C
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcC--------C
Confidence 1123568999999999988877543 589999999999876643 1110 01111111000 0
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
....+..++|+|++++.++.. ......|+.+.+.++
T Consensus 206 p~~r~~~pe~vA~~v~~l~s~---~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 206 PLGRLGRPDEMGALITFLASR---RAAPIVGQFFAFTGG 241 (244)
T ss_dssp TTCSCBCHHHHHHHHHHHHTT---TTGGGTTCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHcCc---cccCccCCEEEeCCC
Confidence 112467899999999988862 123457888888876
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=146.66 Aligned_cols=216 Identities=16% Similarity=0.149 Sum_probs=153.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|.++||||++-||+.+++.|.++| ..|.+.+|+....... ..+ . ..++..+.+|++|+++++++++
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~------~~~-~-g~~~~~~~~Dv~~~~~v~~~~~~~~ 98 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRKDVLDAA------IAE-I-GGGAVGIQADSANLAELDRLYEKVK 98 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHH-H-CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHH-c-CCCeEEEEecCCCHHHHHHHHHHHH
Confidence 56889999999999999999999999 5999999976421100 011 1 3467889999999999887764
Q ss_pred ----CCCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|++||+||.. .+.++++..+++|+.|+.++.+++... .-.++|++||.....
T Consensus 99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~------------- 165 (273)
T 4fgs_A 99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST------------- 165 (273)
T ss_dssp HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS-------------
T ss_pred HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc-------------
Confidence 479999999932 134567889999999999999988765 224899999986641
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH-------HHHHHHhcCCCceEEecCCCc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-------PLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~-------~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+......|+.+|+..+.+.+.++. .+|+++..+-||.+--|...... ..+........|
T Consensus 166 --~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~P--------- 234 (273)
T 4fgs_A 166 --GTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVP--------- 234 (273)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHST---------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCC---------
Confidence 112346899999999988877653 26899999999998766432211 112222222222
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 235 lgR~g~peeiA~~v~FLaSd---~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 235 MGRVGRAEEVAAAALFLASD---DSSFVTGAELFVDGG 269 (273)
T ss_dssp TSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCc---hhcCccCCeEeECcC
Confidence 12355689999999988741 134567999988876
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=148.92 Aligned_cols=226 Identities=8% Similarity=0.001 Sum_probs=144.9
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHhcCCcEEEEEcCCCCc-------cCCCCcCCCCCCCcCCCCCeEEEEec-----
Q 012270 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSL-------QLDPSESNSLLPDSLSSGRAEYHQVD----- 71 (467)
Q Consensus 6 ~~~~~ilVtGat--GfiG~~lv~~Ll~~g~~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~D----- 71 (467)
.++|+++||||+ |+||++++++|+++| ++|++++|++.. .....+....+...........+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence 356899999999 999999999999999 599998764200 00000000001000000002333343
Q ss_pred ---CC----C--------HHHHHHHH-------hCCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHH
Q 012270 72 ---VR----D--------ISQIKKVL-------EGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR 120 (467)
Q Consensus 72 ---l~----d--------~~~l~~~~-------~~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~ 120 (467)
+. | ++++.+++ .++|++||+||... ..++++..+++|+.++.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22 1 23343333 36899999998421 223467799999999999999997
Q ss_pred hC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCC-ChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccC
Q 012270 121 EC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (467)
Q Consensus 121 ~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G~ 193 (467)
.. .-.++|++||...+.. .... ..|+.+|+..+.+.+.++.+ +|+++++++||.+.++
T Consensus 165 ~~m~~~g~iv~isS~~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~ 229 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSR 229 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCC
T ss_pred HHhccCceEEEEeccccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccc
Confidence 65 1258999999876521 1122 47999999999998887654 5899999999999998
Q ss_pred CCCC--cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 194 GDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 194 ~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.... ..+.+........+ ...+..++|+|++++.++.. ......|+.+++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 230 AAKAIGFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLVSP---LASAITGATIYVDNGL 285 (297)
T ss_dssp CSSCCSHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred hhhhccccHHHHHHhhccCC---------CCCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 6543 12333222222111 12456799999999988751 1234578899999873
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=141.66 Aligned_cols=221 Identities=14% Similarity=0.073 Sum_probs=154.0
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.++|+++||||+| -||.++++.|.++| .+|.+.+|+........+ ........++..+.+|++|++++.++++
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~G-a~Vvi~~r~~~~~~~~~~----~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLG-AKLVFTYRKERSRKELEK----LLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH----HHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----HHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 3689999999887 79999999999999 599999997642110000 0111234578899999999998877654
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+|+... ..+++...+++|..++..+.+++...- -.++|++||.....
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~------ 152 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF------ 152 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS------
T ss_pred HHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc------
Confidence 5899999998422 112345577899999988888877652 24899999986531
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+..... .+..........|
T Consensus 153 ---------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~P------- 216 (256)
T 4fs3_A 153 ---------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAP------- 216 (256)
T ss_dssp ---------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHST-------
T ss_pred ---------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCC-------
Confidence 2234568999999999887776533 689999999998876543221 2333333333222
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 217 --l~R~g~peevA~~v~fL~Sd---~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 217 --LKRNVDQVEVGKTAAYLLSD---LSSGVTGENIHVDSG 251 (256)
T ss_dssp --TSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred --CCCCcCHHHHHHHHHHHhCc---hhcCccCCEEEECcC
Confidence 12355689999999988741 123468999988886
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=141.90 Aligned_cols=219 Identities=13% Similarity=0.049 Sum_probs=154.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||++-||+.+++.|.++| .+|.+.+|+..... .+ .+. ....++..+.+|++|+++++++++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~~~~--~~---~~~--~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAG-AEVVCAARRAPDET--LD---IIA--KDGGNASALLIDFADPLAAKDSFTD 77 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHH--HH---HHH--HTTCCEEEEECCTTSTTTTTTSSTT
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcC-CEEEEEeCCcHHHH--HH---HHH--HhCCcEEEEEccCCCHHHHHHHHHh
Confidence 3578999999999999999999999999 59999998653100 00 011 123568899999999988877765
Q ss_pred -CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
+.|++||+||... +.++|+..+++|+.|+..+.+++.. .+ -.++|++||.....
T Consensus 78 g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~------------- 144 (247)
T 4hp8_A 78 AGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ------------- 144 (247)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC-------------
Confidence 4899999999322 3456888999999999998887543 23 45899999986641
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCcccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.||.....+.+.++.+ +|+++..+-||.+--|...... +.....+....| ..-+-
T Consensus 145 --g~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~P---------lgR~g 213 (247)
T 4hp8_A 145 --GGIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIP---------AGRWG 213 (247)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCT---------TSSCB
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCC---------CCCCc
Confidence 1123458999999999887776532 6899999999998655321111 111222223222 22355
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++|+|.+++.++.. ...-..|+++.+.++
T Consensus 214 ~peeiA~~v~fLaSd---~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 214 HSEDIAGAAVFLSSA---AADYVHGAILNVDGG 243 (247)
T ss_dssp CTHHHHHHHHHHTSG---GGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCc---hhcCCcCCeEEECcc
Confidence 689999999987641 124467899988876
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=153.39 Aligned_cols=201 Identities=16% Similarity=0.078 Sum_probs=145.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+++++|||||+|.||.++++.|.++|...|+++.|+........+ +...+ ...++.++.+|++|.+++.++++.
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~----l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~ 313 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAE----LRAELEQLGVRVTIAACDAADREALAALLAE 313 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHH----HHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHH----HHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 458999999999999999999999995478888886431110000 00001 134688999999999999999863
Q ss_pred ------CCEEEEcccCC-C-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 85 ------ASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 85 ------~D~Vih~aa~~-~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
+|+|||+||.. . ..++++..+++|+.|+.++.+++...+.++||++||.+.+.
T Consensus 314 i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~------------- 380 (496)
T 3mje_A 314 LPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVW------------- 380 (496)
T ss_dssp CCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHT-------------
T ss_pred HHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcC-------------
Confidence 69999999954 2 12335678999999999999999999889999999987652
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
.......|+.+|...+.+.+.... .|++++++.||.+.+++.... ......+...+ ...+..++.
T Consensus 381 --g~~g~~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~-~~~~~~l~~~g-----------~~~l~pe~~ 445 (496)
T 3mje_A 381 --GSGGQPGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATD-PEVHDRLVRQG-----------VLAMEPEHA 445 (496)
T ss_dssp --TCTTCHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC-------CHHHHHTT-----------EEEECHHHH
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccC-hHHHHHHHhcC-----------CCCCCHHHH
Confidence 112356899999999999887765 799999999998876654211 11111111111 233568999
Q ss_pred HHHHHHHHH
Q 012270 231 AHAHVCAAE 239 (467)
Q Consensus 231 a~a~~~al~ 239 (467)
++++..++.
T Consensus 446 ~~~l~~~l~ 454 (496)
T 3mje_A 446 LGALDQMLE 454 (496)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999887
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-14 Score=145.18 Aligned_cols=204 Identities=16% Similarity=0.003 Sum_probs=142.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE-cCCCCccCCC------CcCCCCCCCcC--CCCCeEEEEecCCCHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDP------SESNSLLPDSL--SSGRAEYHQVDVRDISQ 77 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~------~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~ 77 (467)
.++++|||||+|.||.++++.|.++|...|+++ +|+....... .+....+...+ ...++.++.+|++|.++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 467999999999999999999999995346666 7875310000 00000000000 13468899999999999
Q ss_pred HHHHHhC------CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCC-----CCeEEEEcCccccccC
Q 012270 78 IKKVLEG------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDG 139 (467)
Q Consensus 78 l~~~~~~------~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~-----v~r~v~~SS~~vyg~~ 139 (467)
+.++++. +|+|||+||... ..++.+..+++|+.|+.++.+++.... ..+||++||.+.+.
T Consensus 330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~-- 407 (525)
T 3qp9_A 330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW-- 407 (525)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT--
T ss_pred HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC--
Confidence 9999874 599999999432 223456789999999999999999876 78999999987652
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCC
Q 012270 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 140 ~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~ 219 (467)
.......|+.+|...+.+.+.+.. .|++++++.||.+ +.+...- ......+...
T Consensus 408 -------------g~~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~-~tgm~~~-~~~~~~~~~~---------- 461 (525)
T 3qp9_A 408 -------------GGAGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPW-EGSRVTE-GATGERLRRL---------- 461 (525)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCB-TTSGGGS-SHHHHHHHHT----------
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCcc-ccccccc-hhhHHHHHhc----------
Confidence 112356899999999999877755 6999999999988 2221100 0111111111
Q ss_pred ccccccchhHHHHHHHHHHH
Q 012270 220 NMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~ 239 (467)
....+..+++++++..++.
T Consensus 462 -g~~~l~pee~a~~l~~~l~ 480 (525)
T 3qp9_A 462 -GLRPLAPATALTALDTALG 480 (525)
T ss_dssp -TBCCBCHHHHHHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHh
Confidence 1245679999999999987
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=141.68 Aligned_cols=226 Identities=14% Similarity=0.026 Sum_probs=139.8
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHhcCCcEEEEEcCCCC-------ccCCCCcCCCCCCCcCCCCCeEEEEec-----
Q 012270 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQS-------LQLDPSESNSLLPDSLSSGRAEYHQVD----- 71 (467)
Q Consensus 6 ~~~~~ilVtGa--tGfiG~~lv~~Ll~~g~~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~D----- 71 (467)
.++|+++|||| +|.||+++++.|+++| ++|++++|++. ......+....+...........+.+|
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAG-ARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTT-CEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCC-CEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence 35689999999 8999999999999999 59999987530 000000000000000000012333333
Q ss_pred -------CCC--------HHHHHHHH-------hCCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHH
Q 012270 72 -------VRD--------ISQIKKVL-------EGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR 120 (467)
Q Consensus 72 -------l~d--------~~~l~~~~-------~~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~ 120 (467)
++| ++++.+++ .++|++||+||... ..++++..+++|+.++.++.+++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 332 33444333 36899999998431 123456789999999999999987
Q ss_pred hC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCC-ChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccC
Q 012270 121 EC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (467)
Q Consensus 121 ~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G~ 193 (467)
.. .-.++|++||...+.. .... ..|+.+|+..+.+.+.++.+ +|+++++++||.+..+
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~ 230 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERV---------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSR 230 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSC---------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCH
T ss_pred HHHhcCCEEEEEeccccccc---------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccch
Confidence 65 1158999999876521 1112 47999999999998877543 6899999999988643
Q ss_pred CCC--------CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 194 GDT--------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 194 ~~~--------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
... .+...+........ ....+..++|+|++++.++.. ......|+.+.+.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~ 292 (315)
T 2o2s_A 231 AASAIGKSGEKSFIDYAIDYSYNNA---------PLRRDLHSDDVGGAALFLLSP---LARAVSGVTLYVDNGL 292 (315)
T ss_dssp HHHHTTCSSSSCHHHHHHHHHHHHS---------SSCCCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred hhhhccccccchhHHHHHHHHhccC---------CCCCCCCHHHHHHHHHHHhCc---hhccCcCCEEEECCCe
Confidence 100 00111111111000 112356799999999988751 1234678899888873
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-15 Score=142.29 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=125.4
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHhcCCcEEEEEcCCC---------C-ccCCCCcCC--C---CCCCcCCCC-----
Q 012270 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQ---------S-LQLDPSESN--S---LLPDSLSSG----- 63 (467)
Q Consensus 6 ~~~~~ilVtGa--tGfiG~~lv~~Ll~~g~~~V~~~~r~~---------~-~~~~~~~~~--~---~~~~~~~~~----- 63 (467)
..+++++|||| +|.||+++++.|+++| ++|++++|++ . ......... + .........
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAG-ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV 85 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHC--------------------------------C
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence 35689999999 8999999999999999 5999998642 0 000000000 0 000001000
Q ss_pred CeEEEEecC------------CC--------HHHHHHHH-------hCCCEEEEcccCCC---------CCCChhhHHHh
Q 012270 64 RAEYHQVDV------------RD--------ISQIKKVL-------EGASTVFYVDATDL---------NTDDFYNCYMI 107 (467)
Q Consensus 64 ~v~~~~~Dl------------~d--------~~~l~~~~-------~~~D~Vih~aa~~~---------~~~~~~~~~~~ 107 (467)
....+.+|+ +| .+++.+++ .++|++||+||... ..++++..+++
T Consensus 86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v 165 (319)
T 2ptg_A 86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS 165 (319)
T ss_dssp CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence 124444442 22 22333333 36899999998431 12345678999
Q ss_pred hHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCC-ChHHHHHHHHHHHHHhhcCC----CCc
Q 012270 108 IVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGL 180 (467)
Q Consensus 108 nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~ 180 (467)
|+.++.++++++... .-.++|++||...+.. .... ..|+.+|+..+.+.+.++.+ +|+
T Consensus 166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gI 230 (319)
T 2ptg_A 166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEKV---------------IPGYGGGMSSAKAALESDCRTLAFEAGRARAV 230 (319)
T ss_dssp HTHHHHHHHHHHGGGEEEEEEEEEEEECC---------------------------------THHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEEeccccccc---------------cCccchhhHHHHHHHHHHHHHHHHHhccccCe
Confidence 999999999998765 1158999999876521 1122 47999999999988877644 589
Q ss_pred eEEEEeCCCcccCCCCCcHH----HHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEc
Q 012270 181 LTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (467)
Q Consensus 181 ~~~ilRp~~i~G~~~~~~~~----~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~ 256 (467)
++++++||.+..+....... .+...... ..........+..++|+|++++.++.. ......|+.+.+.
T Consensus 231 rvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~---~~~~itG~~i~vd 302 (319)
T 2ptg_A 231 RVNCISAGPLKSRAASAIGKAGDKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSP---LARAVTGATLYVD 302 (319)
T ss_dssp EEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSG---GGTTCCSCEEEES
T ss_pred eEEEEeeCCccChhhhhcccccchhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCc---ccCCccCCEEEEC
Confidence 99999999987653221100 00000000 000001123466899999999988752 1234678899998
Q ss_pred CCC
Q 012270 257 NLE 259 (467)
Q Consensus 257 ~~~ 259 (467)
++.
T Consensus 303 GG~ 305 (319)
T 2ptg_A 303 NGL 305 (319)
T ss_dssp TTC
T ss_pred CCc
Confidence 874
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=152.75 Aligned_cols=212 Identities=14% Similarity=0.063 Sum_probs=137.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC--CcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP--SESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.+++++||||+|.||+++++.|+++| +.|++++|........ .+............+. ...+|+.|.+++.++++
T Consensus 18 ~gk~~lVTGas~GIG~aiA~~La~~G-a~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~D~~d~~~~~~~~~~ 95 (613)
T 3oml_A 18 DGRVAVVTGAGAGLGREYALLFAERG-AKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVADYNSVIDGAKVIET 95 (613)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEC--------------CHHHHHHHHHHTTC-CEEECCCCGGGHHHHHC-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHHHHHH
Confidence 56899999999999999999999999 5999998833210000 0000000000001111 23489999888777665
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHH----HhCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa----~~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... +.++++..+++|+.|+.++.+++ ++.+..++|++||.+.+.
T Consensus 96 ~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~--------- 166 (613)
T 3oml_A 96 AIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIY--------- 166 (613)
T ss_dssp ---------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH---------
T ss_pred HHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC---------
Confidence 4799999999432 23456789999999999999988 455667999999986652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.|+.+- +...... +.....
T Consensus 167 ------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~------------------~~~~~~ 221 (613)
T 3oml_A 167 ------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGIL------------------PDILFN 221 (613)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC------------------CHHHHT
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhcc------------------chhhhh
Confidence 1124568999999999988877533 58999999997531 1100000 112234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+.++|+|.+++.++.. .....|+.+++.++
T Consensus 222 ~~~pedvA~~v~~L~s~----~~~~tG~~i~vdGG 252 (613)
T 3oml_A 222 ELKPKLIAPVVAYLCHE----SCEDNGSYIESAAG 252 (613)
T ss_dssp TCCGGGTHHHHHHTTST----TCCCCSCEEEEETT
T ss_pred cCCHHHHHHHHHHhcCC----CcCCCceEEEECCC
Confidence 56789999999887752 23457889988876
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=133.39 Aligned_cols=168 Identities=7% Similarity=-0.078 Sum_probs=117.1
Q ss_pred CCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCC---------CccCCCCcCCCCCCCcCCCCCeEEEEecCCCH-
Q 012270 8 PRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQ---------SLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI- 75 (467)
Q Consensus 8 ~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~- 75 (467)
+++++||||++ .||.+++++|+++| +.|++.+|++ ......... ..........+..+.+|+.+.
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G-~~Vv~~~~~~~~~l~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dv~~~~ 78 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDM--IIDKDKKMNILDMLPFDASFDT 78 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHHHHHTTTTTGGG--BCSSSCBCCEEEEEECCTTCSS
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecCccccccccchHHHHHHHHH--HHhhcccccccccccccccccc
Confidence 57899999875 99999999999999 5999776554 100000000 000011123467788888876
Q ss_pred -H------------------HHHHHHh-------CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHH
Q 012270 76 -S------------------QIKKVLE-------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR 120 (467)
Q Consensus 76 -~------------------~l~~~~~-------~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~ 120 (467)
+ ++.++++ ++|++||+||... ..+++...+++|+.|+.++.+++.
T Consensus 79 ~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 158 (329)
T 3lt0_A 79 ANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFV 158 (329)
T ss_dssp GGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5 5554443 4899999998421 224467899999999999999987
Q ss_pred hCCC--CeEEEEcCccccccCCCCCCCCCCCcccCCCCCC-hHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccC
Q 012270 121 ECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD-LMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (467)
Q Consensus 121 ~~~v--~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~-~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G~ 193 (467)
..-. .++|++||...+. +..... .|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+
T Consensus 159 p~m~~~g~Iv~isS~~~~~---------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 159 NIMKPQSSIISLTYHASQK---------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp GGEEEEEEEEEEECGGGTS---------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHHhhCCeEEEEeCccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 6511 4899999986541 112233 8999999999888776543 4899999999988644
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-12 Score=142.96 Aligned_cols=229 Identities=10% Similarity=-0.021 Sum_probs=146.2
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCCcEEEEEc-CCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHH
Q 012270 7 IPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 7 ~~~~ilVtGatGf-iG~~lv~~Ll~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
+++++|||||+|. ||.++++.|+++| +.|++++ |+........+. +.... ...++.++.+|++|.+++.+++
T Consensus 651 ~gKvaLVTGASgGgIG~aIAr~LA~~G-A~VVl~~~R~~~~l~~~a~e---L~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 651 QGKHALMTGAGAGSIGAEVLQGLLSGG-AKVIVTTSRFSRQVTEYYQG---IYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp TTCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHH---HHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCChHHHHHHHHH---HHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 4689999999999 9999999999999 5899885 433210000000 00001 1245788999999999988776
Q ss_pred h-----------CCCEEEEcccCCCC----------CCChhhHHHhhHHHHHHHHHHHHhC------CCCeEEEEcCccc
Q 012270 83 E-----------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTADV 135 (467)
Q Consensus 83 ~-----------~~D~Vih~aa~~~~----------~~~~~~~~~~nv~g~~~ll~aa~~~------~v~r~v~~SS~~v 135 (467)
+ ++|+|||+||.... .+++...+++|+.++.+++++++.. +-.++|++||...
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag 806 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG 806 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence 3 48999999994321 1345789999999999998774322 2248999999765
Q ss_pred cccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc-cCCCCCcHHHHHHHhcCCCc
Q 012270 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGDTQLVPLLVNLAKPGWT 211 (467)
Q Consensus 136 yg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~-G~~~~~~~~~~~~~~~~g~~ 211 (467)
+.. ....|+.+|+..+.+.+.+..+ .+++++.+.||.+- .+.... ...........+
T Consensus 807 ~~g-----------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~--~~~~~~~~~~~p 867 (1878)
T 2uv9_A 807 TFG-----------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA--NNLVAEGVEKLG 867 (1878)
T ss_dssp SSS-----------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH--HHHTHHHHHTTT
T ss_pred ccC-----------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc--chhhHHHHHhcC
Confidence 411 1357999999999886643211 12999999999987 332211 111111111111
Q ss_pred eEEecCCCccccccchhHHHHHHHHHHHHhcccc-ccCCCcEEEEc--CC--CCcCHHHHHHHHH
Q 012270 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM-VSVAGMAFFIT--NL--EPIKFWDFLSIIL 271 (467)
Q Consensus 212 ~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~-~~~~g~~yni~--~~--~~~s~~el~~~i~ 271 (467)
..+..++|+|.+++.++..- . ....|+.+.+. ++ ....+.++...+.
T Consensus 868 ----------lr~~sPeEVA~avlfLaSd~---a~s~iTGq~I~VDVDGG~~~~~~l~el~~~lr 919 (1878)
T 2uv9_A 868 ----------VRTFSQQEMAFNLLGLMAPA---IVNLCQSDPVFADLNGGLQFIPDLKGLMTKLR 919 (1878)
T ss_dssp ----------CCCBCHHHHHHHHHHHHSHH---HHHHHTTSCEEEEESCSGGGCTTHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHhCCc---ccccccCcEEEEEcCCCccccCCHHHHHHHHH
Confidence 12347899999998877410 0 12457777763 44 2355666665543
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-12 Score=139.80 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=143.4
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHH
Q 012270 7 IPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 7 ~~~~ilVtGatGf-iG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
++++++||||+|. ||+++++.|+++| +.|+++ +|+........++ +.... ...++.++.+|++|.+++.+++
T Consensus 475 ~GKvALVTGASgGGIGrAIAr~LA~~G-A~VVL~~~R~~e~lee~a~e---L~ael~a~Ga~V~vV~~DVTD~esVeaLV 550 (1688)
T 2pff_A 475 KDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQS---IYAKYGAKGSTLIVVPFNQGSKQDVEALI 550 (1688)
T ss_dssp CSCCEEECSCSSSSTHHHHHHHHHHHT-CEEEEEESSCSTTTTTHHHH---TTTTTCCTTCEEEEEECCSSSTTHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHHCc-CEEEEEeCCCHHHHHHHHHH---HHHHhhcCCCeEEEEEeCCCCHHHHHHHH
Confidence 4578999999998 9999999999999 589888 4544311110000 11111 1245788999999999888776
Q ss_pred h-------------CCCEEEEcccCCCC----------CCChhhHHHhhHHHHHHHHHHHHhC------CCCeEEEEcCc
Q 012270 83 E-------------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTA 133 (467)
Q Consensus 83 ~-------------~~D~Vih~aa~~~~----------~~~~~~~~~~nv~g~~~ll~aa~~~------~v~r~v~~SS~ 133 (467)
+ ++|+|||+||.... .+++...+++|+.++.+++++++.. +-.++|++||.
T Consensus 551 e~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSi 630 (1688)
T 2pff_A 551 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN 630 (1688)
T ss_dssp HHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEECh
Confidence 3 48999999994321 1235778999999999999988432 12489999997
Q ss_pred cccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH-HHhhcCCCC--ceEEEEeCCCcccCCCCCcHHHHHHHhcCCC
Q 012270 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL-VLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGW 210 (467)
Q Consensus 134 ~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~-v~~~~~~~g--~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~ 210 (467)
+.+. + ....|+.+|+..+.+ .+.++...+ ++++.+.||.+-|.....- ..........
T Consensus 631 AG~~---------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~-~e~~~~~l~~- 691 (1688)
T 2pff_A 631 HGTF---------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSA-NNIIAEGIEK- 691 (1688)
T ss_dssp TTTS---------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCT-TTTCSTTTSS-
T ss_pred Hhcc---------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCC-chHHHHHHHh-
Confidence 5531 1 235899999999998 444444332 8899999999875321100 0000000000
Q ss_pred ceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEc--CC--CCcCHHHHHHHH
Q 012270 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT--NL--EPIKFWDFLSII 270 (467)
Q Consensus 211 ~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~--~~--~~~s~~el~~~i 270 (467)
....+..++|+|.+++.++..-. .....|+.+.+. ++ ....+.++...+
T Consensus 692 ---------iplR~~sPEEVA~aIlFLaSd~s--As~ITGq~I~VDVDGG~~~~~dl~ella~l 744 (1688)
T 2pff_A 692 ---------MGVRTFSQKEMAFNLLGLLTPEV--VELCQKSPVMADLNGGLQFVPELKEFTAKL 744 (1688)
T ss_dssp ---------SSCCCCCCCTTHHHHHHHTSTTH--HHHHTTSCCCCCCSCSGGGSSSHHHHHHHH
T ss_pred ---------CCCCCCCHHHHHHHHHHHhCCCc--cccccCcEEEEEcCCCeeecCCHHHHHHHH
Confidence 01123468899999888764100 011246666553 33 223455554443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-11 Score=124.76 Aligned_cols=225 Identities=14% Similarity=0.095 Sum_probs=149.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecC-CCHHHHH-HH---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-RDISQIK-KV--- 81 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-~d~~~l~-~~--- 81 (467)
+++.++||||++-||+++++.|.++| +.|++.+|...... .++ +.. ...++..+.+|+ .+.+++. ++
T Consensus 321 ~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~~~~--~~~---i~~--~g~~~~~~~~Dv~~~~~~~~~~~~~~ 392 (604)
T 2et6_A 321 KDKVVLITGAGAGLGKEYAKWFAKYG-AKVVVNDFKDATKT--VDE---IKA--AGGEAWPDQHDVAKDSEAIIKNVIDK 392 (604)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSCCHHH--HHH---HHH--TTCEEEEECCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECcchHHHHHHHHHHHHCC-CEEEEEeCccHHHH--HHH---HHh--cCCeEEEEEcChHHHHHHHHHHHHHh
Confidence 45789999999999999999999999 59999886321000 000 000 123455667788 6655432 22
Q ss_pred HhCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 82 LEGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
+.++|++||+||... +.++++..+++|+.|+.++.+++.. .+-.++|++||.+...
T Consensus 393 ~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~------------- 459 (604)
T 2et6_A 393 YGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY------------- 459 (604)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc-------------
Confidence 336999999999432 2345778999999999998887653 3446899999986541
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+......|+.||+....+.+.++.+ +|+++..+.|+. ...+..... .. ...+....
T Consensus 460 --~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-----~T~m~~~~~----~~----------~~~~~~~p 518 (604)
T 2et6_A 460 --GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-----ETAMTLSIM----RE----------QDKNLYHA 518 (604)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-----CCCC-----------------------CCSSCG
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-----CCccccccC----ch----------hhccCCCH
Confidence 1123468999999998887776533 689999999972 122211110 00 01234578
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCC-----------------CCcCHHHHHHHHHHHcCCC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL-----------------EPIKFWDFLSIILEGLGYQ 277 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~-----------------~~~s~~el~~~i~~~~g~~ 277 (467)
+|+|.+++.++.. ... ..|+.+.+.++ ..++..++.+.+.+.....
T Consensus 519 e~vA~~v~~L~s~---~~~-itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 581 (604)
T 2et6_A 519 DQVAPLLVYLGTD---DVP-VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITDFT 581 (604)
T ss_dssp GGTHHHHHHTTST---TCC-CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhCC---ccC-CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhccc
Confidence 9999998877641 123 67888887765 2367888888888877655
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=126.60 Aligned_cols=231 Identities=16% Similarity=0.119 Sum_probs=145.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC--CcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP--SESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-- 81 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-- 81 (467)
.+++.++||||++-||+++++.|.++| +.|++.+|+....... .+......+.....+.. ..+|+.|.++.+++
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~-~~~d~~d~~~~~~~v~ 83 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLG-AKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV-AVADYNNVLDGDKIVE 83 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECC-----------CHHHHHHHHHHHTTCE-EEEECCCTTCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCccccccccchHHHHHHHHHHHhcCCe-EEEEcCCHHHHHHHHH
Confidence 456899999999999999999999999 5999998864210000 00000000001001112 23566665332222
Q ss_pred -----HhCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCC
Q 012270 82 -----LEGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 82 -----~~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
+.++|++||+||... +.++++..+++|+.|+.++.+++.. .+-.++|++||.+...
T Consensus 84 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~-------- 155 (604)
T 2et6_A 84 TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY-------- 155 (604)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC--------
Confidence 335999999999421 2345778999999999998887653 3446999999986542
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.|+ + ... +...... ....
T Consensus 156 -------~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~----~T~----m~~~~~~----------~~~~ 209 (604)
T 2et6_A 156 -------GNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-A----RSR----MTESIMP----------PPML 209 (604)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-C----CCH----HHHTTSC----------HHHH
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-C----cCc----cccccCC----------hhhh
Confidence 1123458999999999887776533 68999999995 2 121 1111000 0112
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC------------------CCcCHHHHHHHHHHHcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL------------------EPIKFWDFLSIILEGLGY 276 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~------------------~~~s~~el~~~i~~~~g~ 276 (467)
....++|+|.+++.++.. .....|+.+.+.++ ..++..++.+.+.+....
T Consensus 210 ~~~~pe~vA~~v~~L~s~----~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 277 (604)
T 2et6_A 210 EKLGPEKVAPLVLYLSSA----ENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILDY 277 (604)
T ss_dssp TTCSHHHHHHHHHHHTSS----SCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTCC
T ss_pred ccCCHHHHHHHHHHHhCC----cccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhch
Confidence 345789999999988751 13456778877654 346778888888776544
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6e-11 Score=135.44 Aligned_cols=227 Identities=10% Similarity=0.039 Sum_probs=145.7
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHhcCCcEEEEE-cCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHH
Q 012270 7 IPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 7 ~~~~ilVtGatGf-iG~~lv~~Ll~~g~~~V~~~-~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
.+++++||||+|. ||.++++.|+++| +.|+++ +|+........+. +.... ...++.++.+|++|.+++.+++
T Consensus 674 ~gKvaLVTGASsGgIG~aIA~~La~~G-A~Vvl~~~R~~~~l~~~~~e---L~~~~~~~g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 674 KDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQS---IYAKYGAKGSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp TTCEEEEESCCSSSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHH---HHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCCHHHHHHHHHH---HHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 4689999999998 9999999999999 589888 4543210000000 00000 1245788999999999988776
Q ss_pred h-------------CCCEEEEcccCCCC----------CCChhhHHHhhHHHHHHHHHHHHhCC------CCeEEEEcCc
Q 012270 83 E-------------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACRECK------VRRLVYNSTA 133 (467)
Q Consensus 83 ~-------------~~D~Vih~aa~~~~----------~~~~~~~~~~nv~g~~~ll~aa~~~~------v~r~v~~SS~ 133 (467)
+ ++|++||+||.... .+++...+++|+.++.++.++++... -.++|++||.
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ 829 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN 829 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcCh
Confidence 3 48999999994321 23357799999999999999885432 1489999998
Q ss_pred cccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH-HHhhcCCCC--ceEEEEeCCCcccCCC-C--CcHHHHHHHhc
Q 012270 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL-VLFANNIDG--LLTCALRPSNVFGPGD-T--QLVPLLVNLAK 207 (467)
Q Consensus 134 ~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~-v~~~~~~~g--~~~~ilRp~~i~G~~~-~--~~~~~~~~~~~ 207 (467)
..+.. ....|+.+|+..+.+ .+.++.+.+ ++++.+.||.+-|... . ........
T Consensus 830 ag~~g-----------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~~~--- 889 (1887)
T 2uv8_A 830 HGTFG-----------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIE--- 889 (1887)
T ss_dssp TTCSS-----------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHHHH---
T ss_pred HhccC-----------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHHHH---
Confidence 65411 235799999999998 554444332 9999999999974221 1 11111111
Q ss_pred CCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEc--CC--CCcCHHHHHHHH
Q 012270 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT--NL--EPIKFWDFLSII 270 (467)
Q Consensus 208 ~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~--~~--~~~s~~el~~~i 270 (467)
..+ ..+..++|+|.+++.++..-. .....|+.+.+. ++ ....+.++...+
T Consensus 890 -~~p----------lr~~sPEEVA~avlfLaSd~~--as~iTGq~I~VDVDGG~~~~~~l~el~~~l 943 (1887)
T 2uv8_A 890 -KMG----------VRTFSQKEMAFNLLGLLTPEV--VELCQKSPVMADLNGGLQFVPELKEFTAKL 943 (1887)
T ss_dssp -TTS----------CCCEEHHHHHHHHHGGGSHHH--HHHHHHSCEEEEESCSTTTSSSHHHHHHHH
T ss_pred -hcC----------CCCCCHHHHHHHHHHHhCCCc--cccccCcEEEEECCCCeeccccHHHHHHHH
Confidence 010 123478999999988764100 012346667663 44 223565555443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=100.58 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|+|+|+|+ |++|+.+++.|.+.|.++|++++|++... +.....++..+.+|+.+.+++.++++++|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~-----------~~~~~~~~~~~~~d~~~~~~~~~~~~~~d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAAL-----------AVLNRMGVATKQVDAKDEAGLAKALGGFD 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHH-----------HHHHTTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHH-----------HHHHhCCCcEEEecCCCHHHHHHHHcCCC
Confidence 5689999999 99999999999999944899999976511 11113567889999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+|||+++.. ...+++++|.+.|++++.+.++
T Consensus 72 ~vi~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~ 102 (118)
T 3ic5_A 72 AVISAAPFF---------------LTPIIAKAAKAAGAHYFDLTED 102 (118)
T ss_dssp EEEECSCGG---------------GHHHHHHHHHHTTCEEECCCSC
T ss_pred EEEECCCch---------------hhHHHHHHHHHhCCCEEEecCc
Confidence 999998521 1367899999999866554433
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=131.46 Aligned_cols=166 Identities=19% Similarity=0.148 Sum_probs=125.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHH-hcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll-~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
++++++||||+|-||+.+++.|. ++|...|++++|+........+. ..+. ....++..+.+|++|.+++.++++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~---~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~ 605 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAEL---VAQLTAYGAEVSLQACDVADRETLAKVLAS 605 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHH---HHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHH---HHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 56899999999999999999999 78943699999874311110000 0000 1134688899999999999998864
Q ss_pred ------CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 85 ------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 85 ------~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
+|+|||+|+... +.++++..+++|+.|+.++.+++.. .. +||++||.+.+.
T Consensus 606 ~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~-------------- 669 (795)
T 3slk_A 606 IPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVL-------------- 669 (795)
T ss_dssp SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHH--------------
T ss_pred HHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcC--------------
Confidence 599999999432 2345678999999999999999843 34 899999987652
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccC
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~ 193 (467)
.......|+.+|...+.+.++... .|++++.+-||.+-.+
T Consensus 670 -g~~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 670 -GSGGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEH 709 (795)
T ss_dssp -TCSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcc
Confidence 112356899999999988888765 7999999999887644
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-11 Score=116.46 Aligned_cols=208 Identities=11% Similarity=0.004 Sum_probs=131.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh-cCCcEEEEEcCCCCccCCCCcC-----CCCCCCc--CCCCCeEEEEecCCCHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSES-----NSLLPDS--LSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~-~g~~~V~~~~r~~~~~~~~~~~-----~~~~~~~--~~~~~v~~~~~Dl~d~~~l 78 (467)
.+|++|||||++-||+++++.|.+ +| ..|.+++|........... ....... .....+..+.+|++|++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~G-A~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFG-ADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 578999999999999999999999 99 5999998876421110000 0000000 1134578899999999887
Q ss_pred HHHH--------hCCCEEEEcccCC-----------------------------------------CCCCChhhHHHhhH
Q 012270 79 KKVL--------EGASTVFYVDATD-----------------------------------------LNTDDFYNCYMIIV 109 (467)
Q Consensus 79 ~~~~--------~~~D~Vih~aa~~-----------------------------------------~~~~~~~~~~~~nv 109 (467)
++++ .++|++||+||.. ...++++..+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 7654 3479999999751 01123445666666
Q ss_pred HHHH-HHHHHHHhCCC----CeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCce
Q 012270 110 QGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLL 181 (467)
Q Consensus 110 ~g~~-~ll~aa~~~~v----~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~ 181 (467)
.++. .+++++..... .++|.+||.+... . .+......|+.+|+..+.+.+.++.+ .|++
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~--~-----------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIR 285 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEI--T-----------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGGG 285 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGG--G-----------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhc--c-----------CCCccchHHHHHHHHHHHHHHHHHHHhCccCEE
Confidence 6554 55666544321 4799999975431 0 01112368999999999887776533 6899
Q ss_pred EEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 182 TCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 182 ~~ilRp~~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
+.++.||.+--+.... ..+....... ++ +...--.+|+|+++..++.
T Consensus 286 VNaVaPG~i~T~~~~~ip~~~~~~~~~~--~~---------m~r~G~pEdva~~v~~L~s 334 (422)
T 3s8m_A 286 ANVAVLKSVVTQASAAIPVMPLYISMVY--KI---------MKEKGLHEGTIEQLDRLFR 334 (422)
T ss_dssp EEEEEECCCCCTTGGGSTHHHHHHHHHH--HH---------HHHTTCCCCHHHHHHHHHH
T ss_pred EEEEEcCCCcChhhhcCCCChHHHHHHH--hh---------hcCCcChHHHHHHHHHHhc
Confidence 9999999987664322 1121111111 01 1122235899999998875
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-10 Score=112.70 Aligned_cols=209 Identities=10% Similarity=-0.023 Sum_probs=132.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHh-cCCcEEEEEcCCCCccCCCCcC-----CCCCCCc--CCCCCeEEEEecCCCHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSES-----NSLLPDS--LSSGRAEYHQVDVRDISQ 77 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~-~g~~~V~~~~r~~~~~~~~~~~-----~~~~~~~--~~~~~v~~~~~Dl~d~~~ 77 (467)
..+|+++||||++-||.++++.|.+ +| ..|.+++|........... ....... .....+..+.+|++|+++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~G-A~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCG-ADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcC-CEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 4578999999999999999999999 99 5999998865421100000 0000000 113467889999999998
Q ss_pred HHHHHh-------CCCEEEEcccCC-----------------------------------------CCCCChhhHHHhhH
Q 012270 78 IKKVLE-------GASTVFYVDATD-----------------------------------------LNTDDFYNCYMIIV 109 (467)
Q Consensus 78 l~~~~~-------~~D~Vih~aa~~-----------------------------------------~~~~~~~~~~~~nv 109 (467)
+.++++ ++|++||+||.. .+.+++..++++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 877664 479999999852 01233556778887
Q ss_pred HHHH-HHHHHHHhCC----CCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---C-Cc
Q 012270 110 QGAK-NVVTACRECK----VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---D-GL 180 (467)
Q Consensus 110 ~g~~-~ll~aa~~~~----v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~-g~ 180 (467)
.++. .+++++.... -.++|.+||..... . .+......|+.+|...+.+.+.++.+ . |+
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~--~-----------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GI 270 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKI--T-----------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGG 270 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGG--G-----------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhC--c-----------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCe
Confidence 7765 5555544322 14799999975431 0 02122378999999999887776532 5 89
Q ss_pred eEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 181 LTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 181 ~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
++.++-|+.+--+... +..+.......+ + +..+-..+|+|+++..++.
T Consensus 271 RVNaVaPG~i~T~~s~~ip~~p~y~~~l~~--~---------mkr~G~~Ed~a~~i~~L~s 320 (405)
T 3zu3_A 271 DARVSVLKAVVSQASSAIPMMPLYLSLLFK--V---------MKEKGTHEGCIEQVYSLYK 320 (405)
T ss_dssp EEEEEECCCCCCHHHHTSTTHHHHHHHHHH--H---------HHHHTCCCCHHHHHHHHHH
T ss_pred EEEEEEeCCCcCchhhcCCCCcHHHHHHHH--H---------HhcCCCcHHHHHHHHHHHh
Confidence 9999999988654211 111111111110 1 1223335889999998886
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=109.24 Aligned_cols=174 Identities=9% Similarity=-0.071 Sum_probs=116.5
Q ss_pred CCCCEEEEEcCCChhHHH--HHHHHHhcCCcEEEEEcCCCCccCCCCcC-----CCCCCCc--CCCCCeEEEEecCCCHH
Q 012270 6 AIPRTCVVLNGRGFVGRS--LVLRLLELGKCIVRVTDSTQSLQLDPSES-----NSLLPDS--LSSGRAEYHQVDVRDIS 76 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~--lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~-----~~~~~~~--~~~~~v~~~~~Dl~d~~ 76 (467)
..+|+++||||++-||.+ +++.|.++| +.|++++|........... ...+.+. ....++..+.+|++|.+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~G-a~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPE-AHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSC-CEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCC-CEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 357899999999999999 999999999 5999999876421110000 0000000 11346788999999999
Q ss_pred HHHHHHh-------CCCEEEEcccCC-------------C----------------------------CCCChhhHHHhh
Q 012270 77 QIKKVLE-------GASTVFYVDATD-------------L----------------------------NTDDFYNCYMII 108 (467)
Q Consensus 77 ~l~~~~~-------~~D~Vih~aa~~-------------~----------------------------~~~~~~~~~~~n 108 (467)
+++++++ ++|++||+||.. . ..+++...+++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 8877654 479999999852 0 112234456666
Q ss_pred HHHHH-HHHHHHHhCCC----CeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CC
Q 012270 109 VQGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DG 179 (467)
Q Consensus 109 v~g~~-~ll~aa~~~~v----~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g 179 (467)
..+.. .+++++...+. .++|.+||..... +.|......|+.+|+..+.+.+.++.+ .|
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~-------------~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~G 283 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPR-------------TYKIYREGTIGIAKKDLEDKAKLINEKLNRVIG 283 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG-------------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcC-------------CCCccccHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 55554 55565554332 3799999875431 012223378999999999988887644 57
Q ss_pred ceEEEEeCCCcccC
Q 012270 180 LLTCALRPSNVFGP 193 (467)
Q Consensus 180 ~~~~ilRp~~i~G~ 193 (467)
+++.++.||.+--+
T Consensus 284 IrVN~V~PG~v~T~ 297 (418)
T 4eue_A 284 GRAFVSVNKALVTK 297 (418)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEECCcCcCh
Confidence 99999999988654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-11 Score=119.82 Aligned_cols=177 Identities=11% Similarity=0.024 Sum_probs=111.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC------cEEEEEcCC----CCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDST----QSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS 76 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~------~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 76 (467)
++|||+||||+||+|++++..|+..|. .+|+++|+. ..+....... +.+.. ... ..|+....
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d---l~~~~--~~~---~~~i~~~~ 75 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME---IDDCA--FPL---LAGMTAHA 75 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH---HHTTT--CTT---EEEEEEES
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH---Hhhhc--ccc---cCcEEEec
Confidence 467999999999999999999999884 289999987 2100000000 01100 011 13444445
Q ss_pred HHHHHHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCC-CC-eEEEEcCccccccCCCCCCCCCCCcccC
Q 012270 77 QIKKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNSTADVVFDGSHDIHNGDETLTCC 153 (467)
Q Consensus 77 ~l~~~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~-v~-r~v~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (467)
.+.++++++|+|||+|+... ...+.......|+.+++++++++++.+ .+ ++|++|...-.- ..-.....+.. |
T Consensus 76 ~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~--t~~~~~~~~~~--p 151 (329)
T 1b8p_A 76 DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTN--AYIAMKSAPSL--P 151 (329)
T ss_dssp SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH--HHHHHHTCTTS--C
T ss_pred CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHH--HHHHHHHcCCC--C
Confidence 56788999999999999543 234456788999999999999999984 65 899998743100 00000000011 1
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC
Q 012270 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ 197 (467)
Q Consensus 154 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~ 197 (467)
+...++.++....++...+++..|++...++...|+|.+...
T Consensus 152 --~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s 193 (329)
T 1b8p_A 152 --AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPT 193 (329)
T ss_dssp --GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTT
T ss_pred --HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCCc
Confidence 222456666666666666655567777777777788865443
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=106.16 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.++|+|+||||+||+|+.++..|+++|. ++|+++|+.+... .. ..+.+......+ .+ +.+..++.+++++
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~----~~-~dL~~~~~~~~v---~~-~~~t~d~~~al~g 76 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPG----VT-ADISHMDTGAVV---RG-FLGQQQLEAALTG 76 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHH----HH-HHHHTSCSSCEE---EE-EESHHHHHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHh----HH-HHhhcccccceE---EE-EeCCCCHHHHcCC
Confidence 3568999999999999999999998872 2899999765300 00 001111111112 22 3345667888999
Q ss_pred CCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|+|||+|+.... ..........|+.+++++++++++.+.+.+|+++|-
T Consensus 77 aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 77 MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 9999999995432 233456789999999999999999988888888773
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=121.13 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=115.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+++++||||+|-||+.+++.|+++|...|++++|+........+. .... ....++..+.+|++|.+++.++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~---~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~ 1959 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQ---VREWRRQGVQVLVSTSNASSLDGARSLITEA 1959 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHH---HHHHHHTTCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHH---HHHHHhCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999953488888875411000000 0000 012357788899999999887764
Q ss_pred ----CCCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
.+|+|||+|+.. ...+++...+++|+.|+.++.+++... ...+||++||.+...
T Consensus 1960 ~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~------------- 2026 (2512)
T 2vz8_A 1960 TQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR------------- 2026 (2512)
T ss_dssp HHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT-------------
T ss_pred HhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC-------------
Confidence 479999999942 134567889999999999998887654 346999999986641
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~ 191 (467)
.......|+.+|...+.+.+.... .|++...+-.+.+-
T Consensus 2027 --g~~g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A 2027 --GNAGQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIG 2064 (2512)
T ss_dssp --TCTTCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBC
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence 112346899999999999885544 57888877776653
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-09 Score=105.20 Aligned_cols=119 Identities=8% Similarity=-0.041 Sum_probs=79.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcC--CCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDS--TQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|||+||||+||+|++++..|+.+|. .+++++|+ ................. .....+.+...| +++.++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~~i~~~~----d~l~~al~ga 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALA-GTRSDANIYVES----DENLRIIDES 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHT-TSCCCCEEEEEE----TTCGGGGTTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHH-hcCCCeEEEeCC----cchHHHhCCC
Confidence 5899999999999999999998874 26888988 33100000000000000 111233333322 1245678899
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|+|||+|+... ...+....++.|+.+++++++++++++ +++|+++|-
T Consensus 76 D~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SN 123 (313)
T 1hye_A 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITN 123 (313)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSS
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecC
Confidence 99999999543 233456789999999999999999999 888888874
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=103.71 Aligned_cols=115 Identities=9% Similarity=0.015 Sum_probs=78.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcC--CCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDS--TQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r--~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|||+||||+|++|++++..|+..|+. +++++|+ .......... .+.+.. ...++.... | + .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~---dl~~~~~~~~~~~v~~-~--~----~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAA---DTNHGIAYDSNTRVRQ-G--G----YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHH---HHHHHHTTTCCCEEEE-C--C----GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHH---HHHHHHhhCCCcEEEe-C--C----HHHhCC
Confidence 68999999999999999999988743 6888988 4321000000 011100 012333332 2 2 345789
Q ss_pred CCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|+|||+|+.... ..........|+.+++++++++++.+.+.+|+++|-
T Consensus 71 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 71 SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999999995432 234456789999999999999999988888888774
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-08 Score=82.18 Aligned_cols=104 Identities=12% Similarity=0.075 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 85 (467)
++++|+|+|+ |.+|+.+++.|.+.|+ +|+++++++.... .....+...+.+|..|.+.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~-----------~~~~~~~~~~~~d~~~~~~l~~~~~~~~ 71 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGH-EVLAVDINEEKVN-----------AYASYATHAVIANATEENELLSLGIRNF 71 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC-CCEEEESCHHHHH-----------TTTTTCSEEEECCTTCHHHHHTTTGGGC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHH-----------HHHHhCCEEEEeCCCCHHHHHhcCCCCC
Confidence 4668999998 9999999999999994 8999998764110 01122456788999998888776 7789
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
|+||++++.. .+.| ..+.+.+++.+++++|..++...+
T Consensus 72 d~vi~~~~~~---------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~ 109 (144)
T 2hmt_A 72 EYVIVAIGAN---------IQAS----TLTTLLLKELDIPNIWVKAQNYYH 109 (144)
T ss_dssp SEEEECCCSC---------HHHH----HHHHHHHHHTTCSEEEEECCSHHH
T ss_pred CEEEECCCCc---------hHHH----HHHHHHHHHcCCCeEEEEeCCHHH
Confidence 9999988632 1222 246677888888887776665443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.8e-07 Score=108.81 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=138.6
Q ss_pred CCCCEEEEEcCCCh-hHHHHHHHHHhcCCcEEEEEcCCCCccCCC-CcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHH
Q 012270 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESNSLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 6 ~~~~~ilVtGatGf-iG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~-~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
..+|+++||||++- ||+++++.|+++| .+|++.+|+....... .++ +.... ...++..+.+|++|++++.++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~G-A~Vvi~~r~~~~~~~~~~~~---l~~~l~~~G~~~~~v~~Dvtd~~~v~~l 2209 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGG-ATVIATTSRLDDDRLAFYKQ---LYRDHARFDATLWVVPANMASYSDIDKL 2209 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESCCSHHHHHHHHH---HHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCC-CEEEEEeCChhhhhhHHHHH---HHHHHhhcCCeEEEEEecCCCHHHHHHH
Confidence 35789999999988 9999999999999 5999999876420000 000 00001 123467889999999998876
Q ss_pred Hh-----------CCCEEEEcccCC------------CCCCChhh----HHHhhHHHHHHHHHHHHhC----CCC---eE
Q 012270 82 LE-----------GASTVFYVDATD------------LNTDDFYN----CYMIIVQGAKNVVTACREC----KVR---RL 127 (467)
Q Consensus 82 ~~-----------~~D~Vih~aa~~------------~~~~~~~~----~~~~nv~g~~~ll~aa~~~----~v~---r~ 127 (467)
++ +.|++||+||.. ....++.. .+++|..++..++.++... +.. .+
T Consensus 2210 v~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~i 2289 (3089)
T 3zen_D 2210 VEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHV 2289 (3089)
T ss_dssp HHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Confidence 42 379999999851 01223333 3888999988887766542 321 22
Q ss_pred EEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccCCCC---CcHH
Q 012270 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPGDT---QLVP 200 (467)
Q Consensus 128 v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~ilRp~~i~G~~~~---~~~~ 200 (467)
|..+|. ..+ .......|+.||+..+.+.+.++.+ .+++++.+.||.+-+.... ....
T Consensus 2290 i~~~ss-~~g---------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~ 2353 (3089)
T 3zen_D 2290 VLPGSP-NRG---------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIV 2353 (3089)
T ss_dssp EEEECS-STT---------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTH
T ss_pred EEECCc-ccc---------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHH
Confidence 222221 110 0012347999999999998887765 3588999999988744311 1111
Q ss_pred HHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCc--EEEEcCCC---CcCHHHHHHHHH
Q 012270 201 LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM--AFFITNLE---PIKFWDFLSIIL 271 (467)
Q Consensus 201 ~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~--~yni~~~~---~~s~~el~~~i~ 271 (467)
... .. .+ ......+|+|.+++.++..-.+ .-..++ ...++++- ...+.|+.+.+.
T Consensus 2354 ~~~---~~-~~----------~r~~~PeEIA~avlfLaS~~a~--~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2354 SAV---EE-AG----------VTTYTTDEMAAMLLDLCTVETK--VAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp HHH---GG-GS----------CBCEEHHHHHHHHHHTTSHHHH--HHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred HHH---Hh-cC----------CCCCCHHHHHHHHHHHhChhhh--hHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 111 11 00 0112689999999986631000 001122 33444652 368888887653
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=96.30 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++++|+|+| +|++|+++++.|.+.| ++|++.+|+..... . +... .+++..+.+|+.|.+++.++++++|
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G-~~V~v~~R~~~~a~----~---la~~--~~~~~~~~~Dv~d~~~l~~~l~~~D 70 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSG-IKVTVACRTLESAK----K---LSAG--VQHSTPISLDVNDDAALDAEVAKHD 70 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTT-CEEEEEESSHHHHH----H---TTTT--CTTEEEEECCTTCHHHHHHHHTTSS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCc-CEEEEEECCHHHHH----H---HHHh--cCCceEEEeecCCHHHHHHHHcCCc
Confidence 367999997 7999999999999999 58999999764211 0 1111 1247788999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHH--hh-------HHHHHHHHHHHHhCCCC
Q 012270 87 TVFYVDATDLNTDDFYNCYM--II-------VQGAKNVVTACRECKVR 125 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~--~n-------v~g~~~ll~aa~~~~v~ 125 (467)
+|||+++......-....++ .| ...+.+++++|++.|++
T Consensus 71 vVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 71 LVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp EEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred EEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 99999984321110111112 11 24678999999999973
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-07 Score=77.94 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 85 (467)
+|++|+|+|+ |.+|+++++.|.++| ++|+++++++... +.....+...+.+|.+|++.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~~~~-----------~~~~~~~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSKEKI-----------ELLEDEGFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHH-----------HHHHHTTCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCHHHH-----------HHHHHCCCcEEECCCCCHHHHHhCCcccC
Confidence 4678999998 999999999999999 4999999976511 111123678899999999988876 4679
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
|+||.+.+. .+.|. .+...+++.+..++|-
T Consensus 72 d~vi~~~~~----------~~~n~----~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 72 SAVLITGSD----------DEFNL----KILKALRSVSDVYAIV 101 (141)
T ss_dssp SEEEECCSC----------HHHHH----HHHHHHHHHCCCCEEE
T ss_pred CEEEEecCC----------HHHHH----HHHHHHHHhCCceEEE
Confidence 999976641 13333 3555666666545543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-07 Score=76.91 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=70.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D 86 (467)
+|+|+|+|+ |++|+.+++.|.+.| ++|++++|++... .......++..+.+|..+.+.+.++ ++++|
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~~~~----------~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d 71 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDIC----------KKASAEIDALVINGDCTKIKTLEDAGIEDAD 71 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHH----------HHHHHHCSSEEEESCTTSHHHHHHTTTTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHH----------HHHHHhcCcEEEEcCCCCHHHHHHcCcccCC
Confidence 579999987 999999999999999 4999999876411 0000112567788999998887655 67899
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
+||++.... ..| ..+.+.+++.+.+++|..+
T Consensus 72 ~vi~~~~~~----------~~~----~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGKE----------EVN----LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp EEEECCSCH----------HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred EEEEeeCCc----------hHH----HHHHHHHHHcCCCEEEEEe
Confidence 999986421 222 2456677778877777544
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5.4e-06 Score=71.07 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=72.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC-CCCeEEEEecCCCHHHHHHH-Hh
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKV-LE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~-~~ 83 (467)
...++|+|+|+ |.+|+.+++.|.+.| ++|++++|++... +... ..+...+.+|..+.+.+.++ ++
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g-~~V~vid~~~~~~-----------~~~~~~~g~~~~~~d~~~~~~l~~~~~~ 83 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSG-HSVVVVDKNEYAF-----------HRLNSEFSGFTVVGDAAEFETLKECGME 83 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCGGGG-----------GGSCTTCCSEEEESCTTSHHHHHTTTGG
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHH-----------HHHHhcCCCcEEEecCCCHHHHHHcCcc
Confidence 35689999986 999999999999999 4999999977521 1112 34567788999998877765 77
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHh-CCCCeEEEEcCc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVYNSTA 133 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~-~~v~r~v~~SS~ 133 (467)
++|+||.+.+.. ..| ..+.+.++. .+..+++...+.
T Consensus 84 ~ad~Vi~~~~~~----------~~~----~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 84 KADMVFAFTNDD----------STN----FFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp GCSEEEECSSCH----------HHH----HHHHHHHHHTSCCSEEEEECSS
T ss_pred cCCEEEEEeCCc----------HHH----HHHHHHHHHHCCCCeEEEEECC
Confidence 899999876521 112 345566666 566666655543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.7e-07 Score=88.26 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
..|||+|.|| |++|+.+++.|.+. ++|++.+++.... .. ..+.+..+..|+.|.+++.++++++|
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~~----------~~--~~~~~~~~~~d~~d~~~l~~~~~~~D 79 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNENL----------EK--VKEFATPLKVDASNFDKLVEVMKEFE 79 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHHH----------HH--HTTTSEEEECCTTCHHHHHHHHTTCS
T ss_pred CccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHHH----------HH--HhccCCcEEEecCCHHHHHHHHhCCC
Confidence 5689999998 99999999988654 4899999876411 11 12356778899999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
+||+++++. + ...++++|.++|+ +++=+|
T Consensus 80 vVi~~~p~~---------~------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 80 LVIGALPGF---------L------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp EEEECCCGG---------G------HHHHHHHHHHHTC-EEEECC
T ss_pred EEEEecCCc---------c------cchHHHHHHhcCc-ceEeee
Confidence 999988632 0 1368899999997 766544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.7e-07 Score=90.56 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=73.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
||+|+|+|| |++|+.+++.|.++|+ .+|++.+|+..+.....+. +.. ....++..+.+|++|.+++.+++++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~---l~~-~~~~~~~~~~~D~~d~~~l~~~l~~~ 75 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS---IKA-KGYGEIDITTVDADSIEELVALINEV 75 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH---HHH-TTCCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH---hhh-hcCCceEEEEecCCCHHHHHHHHHhh
Confidence 579999999 9999999999999984 2899999976521100000 000 0013588899999999999999987
Q ss_pred -CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 85 -ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 85 -~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
+|+|||++++.. ...++++|.+.|+. ++-
T Consensus 76 ~~DvVin~ag~~~---------------~~~v~~a~l~~g~~-vvD 105 (405)
T 4ina_A 76 KPQIVLNIALPYQ---------------DLTIMEACLRTGVP-YLD 105 (405)
T ss_dssp CCSEEEECSCGGG---------------HHHHHHHHHHHTCC-EEE
T ss_pred CCCEEEECCCccc---------------ChHHHHHHHHhCCC-EEE
Confidence 999999987321 14678899998874 443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.9e-07 Score=87.68 Aligned_cols=80 Identities=23% Similarity=0.209 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++++++||||+|.+|++++..|+++|. +|++++|+...... +.+.. ...++..+.+|++|.+++.++++++
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~-------l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 189 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQA-------AADSVNKRFKVNVTAAETADDASRAEAVKGA 189 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH-------HHHHHHHHHTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHH-------HHHHHHhcCCcEEEEecCCCHHHHHHHHHhC
Confidence 568999999999999999999999994 89999997541100 00000 0024567889999999999999999
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+|||+++.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999974
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.7e-06 Score=79.64 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=78.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
|||.|+||+|++|+.++..|+..|. .+|+++|+.+.... ... +.+.....++....+ ..+++++++++|+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~--a~d---L~~~~~~~~l~~~~~----t~d~~~a~~~aDv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV--AAD---LSHIETRATVKGYLG----PEQLPDCLKGCDV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH--HHH---HTTSSSSCEEEEEES----GGGHHHHHTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHH--HHH---HhccCcCceEEEecC----CCCHHHHhCCCCE
Confidence 6899999999999999999998872 38999999762100 000 111111112222211 1345678899999
Q ss_pred EEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 88 VFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 88 Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
||++++... ...+.......|+..++.+++.+.+...+ ++|++|-.
T Consensus 72 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNP 119 (314)
T 1mld_A 72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119 (314)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred EEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCC
Confidence 999999543 22334566799999999999999987643 77776653
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.8e-06 Score=75.71 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCCEEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEe
Q 012270 7 IPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 7 ~~~~ilVtGa----------------tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 70 (467)
.+|+|||||| +|.+|.+++++++++| ++|+++.|.... .. ..+.++..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~G-a~V~lv~~~~~~-----------~~-~~~~~~~~~-- 66 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAG-YEVCLITTKRAL-----------KP-EPHPNLSIR-- 66 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTT-CEEEEEECTTSC-----------CC-CCCTTEEEE--
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCC-CEEEEEeCCccc-----------cc-cCCCCeEEE--
Confidence 5789999999 9999999999999999 599999987641 11 012345444
Q ss_pred cCCCHHHHHH----HHhCCCEEEEcccCCC
Q 012270 71 DVRDISQIKK----VLEGASTVFYVDATDL 96 (467)
Q Consensus 71 Dl~d~~~l~~----~~~~~D~Vih~aa~~~ 96 (467)
|+...+++.+ .+.++|++||+||+.+
T Consensus 67 ~v~s~~em~~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 67 EITNTKDLLIEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp ECCSHHHHHHHHHHHGGGCSEEEECSBCCS
T ss_pred EHhHHHHHHHHHHHhcCCCCEEEEcCcccc
Confidence 6666655443 3457999999999654
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=5.6e-07 Score=87.19 Aligned_cols=121 Identities=11% Similarity=-0.000 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-E-----EEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-I-----VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~-----V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
.+++|+||||+|+||++++..|+..|.. + ++++|+.+.......... .+.+. ..+-..-+.. .+...+
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~-DL~~~-~~~~~~~~~~----~~~~~~ 75 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM-ELQDC-ALPLLKDVIA----TDKEEI 75 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHHT-CCTTEEEEEE----ESCHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHh-hhHhh-hhcccCCEEE----cCCcHH
Confidence 3579999999999999999999987642 4 999998642000000000 00110 0011111211 123466
Q ss_pred HHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC--eEEEEcCc
Q 012270 81 VLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTA 133 (467)
Q Consensus 81 ~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~--r~v~~SS~ 133 (467)
+++++|+|||+||.+. ...+....++.|+..++++++++++++.+ +++.+|..
T Consensus 76 ~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 76 AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 7889999999999543 23345667899999999999999999765 67777754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=67.02 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D 86 (467)
.++|+|+|+ |.+|+.+++.|.+.|+ +|+++++++.... +. +.. ....++..+.+|.+|++.+.++ ++++|
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~-~V~vid~~~~~~~---~~---~~~-~~~~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQ-NVTVISNLPEDDI---KQ---LEQ-RLGDNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCCHHHH---HH---HHH-HHCTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC-CEEEEECCChHHH---HH---HHH-hhcCCCeEEEcCCCCHHHHHHcChhhCC
Confidence 468999986 9999999999999994 9999999642000 00 000 0124688999999999999887 88999
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+||-+..
T Consensus 74 ~vi~~~~ 80 (153)
T 1id1_A 74 AILALSD 80 (153)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9996653
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-06 Score=85.53 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++++|+|+|+ |++|+.+++.|++.+..+|++++|+..... . +.. ..++..+.+|+.|.+++.++++++|
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~----~---la~---~~~~~~~~~D~~d~~~l~~~l~~~D 90 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQ----A---LAK---PSGSKAISLDVTDDSALDKVLADND 90 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHH----H---HHG---GGTCEEEECCTTCHHHHHHHHHTSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHH----H---HHH---hcCCcEEEEecCCHHHHHHHHcCCC
Confidence 5679999997 999999999999983259999999764210 0 111 1246778899999999999999999
Q ss_pred EEEEcccC
Q 012270 87 TVFYVDAT 94 (467)
Q Consensus 87 ~Vih~aa~ 94 (467)
+|||+++.
T Consensus 91 vVIn~tp~ 98 (467)
T 2axq_A 91 VVISLIPY 98 (467)
T ss_dssp EEEECSCG
T ss_pred EEEECCch
Confidence 99999874
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=71.10 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEE
Q 012270 5 EAIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68 (467)
Q Consensus 5 ~~~~~~ilVtGa----------------tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~ 68 (467)
...++++||||| +|.+|.+++++|.++| ++|+++++... +.. +.++.
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G-a~V~l~~~~~~-----------l~~---~~g~~-- 67 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSGPVS-----------LPT---PPFVK-- 67 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEECSCC-----------CCC---CTTEE--
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC-CEEEEEECCcc-----------ccc---CCCCe--
Confidence 456789999999 7999999999999999 59999887543 110 12333
Q ss_pred EecCCCHHHHHHH----HhCCCEEEEcccCC
Q 012270 69 QVDVRDISQIKKV----LEGASTVFYVDATD 95 (467)
Q Consensus 69 ~~Dl~d~~~l~~~----~~~~D~Vih~aa~~ 95 (467)
..|+.+.+++.+. +.++|++||+||+.
T Consensus 68 ~~dv~~~~~~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 68 RVDVMTALEMEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp EEECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred EEccCcHHHHHHHHHHhcCCCCEEEECCccc
Confidence 5688887766544 34699999999954
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-06 Score=78.84 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEE-EEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~-~~~r~~ 43 (467)
.+|||.|+|++|.+|+.+++.+.+....+++ ++++.+
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~ 41 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG 41 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 4579999999999999999998865324666 556654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=70.12 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=57.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH--HhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV--LEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~--~~~ 84 (467)
+++|+|+|+ |.+|+.+++.|.+. |+ +|+++++++... +.....++..+.+|..|.+.+.++ +++
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~-~V~vid~~~~~~-----------~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGK-ISLGIEIREEAA-----------QQHRSEGRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCS-CEEEEESCHHHH-----------HHHHHTTCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCC-eEEEEECCHHHH-----------HHHHHCCCCEEEcCCCCHHHHHhccCCCC
Confidence 568999985 99999999999999 94 999999977521 111123677889999999888876 778
Q ss_pred CCEEEEccc
Q 012270 85 ASTVFYVDA 93 (467)
Q Consensus 85 ~D~Vih~aa 93 (467)
+|+||.+.+
T Consensus 106 ad~vi~~~~ 114 (183)
T 3c85_A 106 VKLVLLAMP 114 (183)
T ss_dssp CCEEEECCS
T ss_pred CCEEEEeCC
Confidence 999997654
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.87 E-value=8.3e-06 Score=79.11 Aligned_cols=122 Identities=9% Similarity=0.016 Sum_probs=77.5
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQI 78 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l 78 (467)
|++.=..+|+|.|+|++|++|+.++..++..|. .+|+++|+...+....... +.+. ....++.. . ...
T Consensus 1 ~~~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~D---L~~~~~~~~~i~~-t------~d~ 70 (343)
T 3fi9_A 1 MSLSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEE---IRHCGFEGLNLTF-T------SDI 70 (343)
T ss_dssp -CCCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHH---HHHHCCTTCCCEE-E------SCH
T ss_pred CCccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHh---hhhCcCCCCceEE-c------CCH
Confidence 555445678999999999999999999999884 3899999865311000000 0000 11122322 1 134
Q ss_pred HHHHhCCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCe--EEEEcC
Q 012270 79 KKVLEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRR--LVYNST 132 (467)
Q Consensus 79 ~~~~~~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r--~v~~SS 132 (467)
.++++++|+||.+||.+.. ..+.......|+...+.+.+.+.+...+- ++.+|.
T Consensus 71 ~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 71 KEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp HHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 5678899999999995432 23345668899999999999999886433 455554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=71.69 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=68.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
|+|+|+|+ |.+|+++++.|.++|+ +|+++++++... .......+...+.+|.+|++.+.++ ++++|+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~-~v~vid~~~~~~----------~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY-GVVIINKDRELC----------EEFAKKLKATIIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC-CEEEEESCHHHH----------HHHHHHSSSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHHHH----------HHHHHHcCCeEEEcCCCCHHHHHhcCcccCCE
Confidence 68999997 9999999999999995 999999877521 1101113678899999999999887 778999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHh-CCCCeEEE
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVY 129 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~-~~v~r~v~ 129 (467)
||-+.+.+ ..| ..+...+++ .+..++|-
T Consensus 69 vi~~~~~d----------~~n----~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 69 VVILTPRD----------EVN----LFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp EEECCSCH----------HHH----HHHHHHHHHTSCCCEEEE
T ss_pred EEEecCCc----------HHH----HHHHHHHHHHcCCCeEEE
Confidence 99554311 223 234555665 57777663
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00026 Score=68.99 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHH-hcCCcEEEEEcCCCCccCCCCcCC-----CCCCCc--CCCCCeEEEEecCCCHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSESN-----SLLPDS--LSSGRAEYHQVDVRDISQ 77 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll-~~g~~~V~~~~r~~~~~~~~~~~~-----~~~~~~--~~~~~v~~~~~Dl~d~~~ 77 (467)
..+|++|||||+.-+|.+.+..|. +.| ..|.++.+............ ....+. ........+.+|+.|.++
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~G-A~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYG-AATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCC-CCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 357999999999999999998887 677 47888877654211000000 000000 113467889999999998
Q ss_pred HHHHHh-------CCCEEEEcccC
Q 012270 78 IKKVLE-------GASTVFYVDAT 94 (467)
Q Consensus 78 l~~~~~-------~~D~Vih~aa~ 94 (467)
++++++ ++|++||.+|.
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~ 150 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLAS 150 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeccc
Confidence 887764 47999999993
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.3e-05 Score=65.88 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEG 84 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~ 84 (467)
...++|+|.|+ |.+|+.+++.|.+.| ++|+++++++... +.....++..+.+|.++++.+.++ +++
T Consensus 5 ~~~~~viIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~~-----------~~~~~~g~~~i~gd~~~~~~l~~a~i~~ 71 (140)
T 3fwz_A 5 DICNHALLVGY-GRVGSLLGEKLLASD-IPLVVIETSRTRV-----------DELRERGVRAVLGNAANEEIMQLAHLEC 71 (140)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHH-----------HHHHHTTCEEEESCTTSHHHHHHTTGGG
T ss_pred cCCCCEEEECc-CHHHHHHHHHHHHCC-CCEEEEECCHHHH-----------HHHHHcCCCEEECCCCCHHHHHhcCccc
Confidence 34578999987 999999999999999 4999999987511 111224788999999999988765 678
Q ss_pred CCEEEEccc
Q 012270 85 ASTVFYVDA 93 (467)
Q Consensus 85 ~D~Vih~aa 93 (467)
+|+||-+..
T Consensus 72 ad~vi~~~~ 80 (140)
T 3fwz_A 72 AKWLILTIP 80 (140)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEECC
Confidence 999986553
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.68 E-value=4.9e-05 Score=69.72 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 85 (467)
..++|+|+|+ |.+|+.+++.|.+.| + |+++++++.. ... .. .++..+.+|.+|++.+.++ ++++
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~~~~~----------~~~-~~-~~~~~i~gd~~~~~~l~~a~i~~a 72 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVR----------KKV-LR-SGANFVHGDPTRVSDLEKANVRGA 72 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESCGGGH----------HHH-HH-TTCEEEESCTTCHHHHHHTTCTTC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEECCHHH----------HHH-Hh-cCCeEEEcCCCCHHHHHhcCcchh
Confidence 3578999998 999999999999999 6 9999987651 111 11 4688999999999999877 7899
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEE
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v 128 (467)
|+||-+...+ +.|. .+...+++.+.+ ++|
T Consensus 73 d~vi~~~~~d----------~~n~----~~~~~a~~~~~~~~ii 102 (234)
T 2aef_A 73 RAVIVDLESD----------SETI----HCILGIRKIDESVRII 102 (234)
T ss_dssp SEEEECCSCH----------HHHH----HHHHHHHHHCSSSEEE
T ss_pred cEEEEcCCCc----------HHHH----HHHHHHHHHCCCCeEE
Confidence 9999665311 2333 355566776664 544
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00016 Score=70.20 Aligned_cols=95 Identities=20% Similarity=0.187 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|+|+|+|.||||++|+.+++.|.+++|. +++.+....+. .+.....+......|. |++ .+.+
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~-----------g~~~~~~g~~i~~~~~-~~~----~~~~ 68 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA-----------GQRMGFAESSLRVGDV-DSF----DFSS 68 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT-----------TCEEEETTEEEECEEG-GGC----CGGG
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCC-----------CCccccCCcceEEecC-CHH----HhcC
Confidence 3478999999999999999999977642 55555422110 0000001112211232 222 2468
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|+||-+.+. ..+...++.+.+.|+ ++|-+|+.
T Consensus 69 ~DvV~~a~g~---------------~~s~~~a~~~~~aG~-kvId~Sa~ 101 (340)
T 2hjs_A 69 VGLAFFAAAA---------------EVSRAHAERARAAGC-SVIDLSGA 101 (340)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHTTC-EEEETTCT
T ss_pred CCEEEEcCCc---------------HHHHHHHHHHHHCCC-EEEEeCCC
Confidence 9999987751 134567778888898 47777775
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00024 Score=69.04 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=60.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC-----CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
||+|+|.||||++|+.|++.|++++ +.+++.+.+..+........ .........+.. .|+ +++ .+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~---~~~l~~~~~~~~--~~~-~~~----~~ 78 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEH---HPHLTPLAHRVV--EPT-EAA----VL 78 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGT---CTTCGGGTTCBC--EEC-CHH----HH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhh---cccccccceeee--ccC-CHH----Hh
Confidence 5799999999999999999999987 55777776433210000000 000000011222 233 333 35
Q ss_pred hCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
.++|+||.+.+... +..+++.+ +.|+ ++|-.|+..
T Consensus 79 ~~~DvVf~alg~~~---------------s~~~~~~~-~~G~-~vIDlSa~~ 113 (352)
T 2nqt_A 79 GGHDAVFLALPHGH---------------SAVLAQQL-SPET-LIIDCGADF 113 (352)
T ss_dssp TTCSEEEECCTTSC---------------CHHHHHHS-CTTS-EEEECSSTT
T ss_pred cCCCEEEECCCCcc---------------hHHHHHHH-hCCC-EEEEECCCc
Confidence 58999998876432 34567777 7786 788888874
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=5.2e-05 Score=67.57 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHH---HHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK---KVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~---~~~~ 83 (467)
.+++|+|+||+|-||..+++.+...| .+|++++|++.... . ..+ .+... ..|..+.+..+ +...
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~----~---~~~----~g~~~-~~d~~~~~~~~~~~~~~~ 104 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKRE----M---LSR----LGVEY-VGDSRSVDFADEILELTD 104 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHH----H---HHT----TCCSE-EEETTCSTHHHHHHHHTT
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHH----H---HHH----cCCCE-EeeCCcHHHHHHHHHHhC
Confidence 46899999999999999999999999 59999998764110 0 001 12222 24666644333 3332
Q ss_pred --CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
++|+||++++.. .....++.++..| ++|.+++..
T Consensus 105 ~~~~D~vi~~~g~~---------------~~~~~~~~l~~~G--~~v~~g~~~ 140 (198)
T 1pqw_A 105 GYGVDVVLNSLAGE---------------AIQRGVQILAPGG--RFIELGKKD 140 (198)
T ss_dssp TCCEEEEEECCCTH---------------HHHHHHHTEEEEE--EEEECSCGG
T ss_pred CCCCeEEEECCchH---------------HHHHHHHHhccCC--EEEEEcCCC
Confidence 589999998620 1234445555444 788888754
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=8e-05 Score=71.39 Aligned_cols=114 Identities=6% Similarity=0.030 Sum_probs=70.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEE-ecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQ-VDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~Dl~d~~~l~~~~~~ 84 (467)
+|+|.|+|+ |.+|..++..|...|+.+|+++|+++......... +.+.. .....+... .|. +++++
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~d---l~~~~~~~~~~~~i~~t~d~-------~a~~~ 70 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALD---LYEASPIEGFDVRVTGTNNY-------ADTAN 70 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHH---HHTTHHHHTCCCCEEEESCG-------GGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHh---HHHhHhhcCCCeEEEECCCH-------HHHCC
Confidence 479999999 99999999999999954799999876421100000 11100 001122221 232 34778
Q ss_pred CCEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 85 ASTVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+|+||.+++.+... .........|....+.+.+.+.+...+.++.+.|
T Consensus 71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 99999999854322 1223456778888889999998886655555544
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00034 Score=67.98 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCC-CCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+|++|.|.||||++|+.+++.|.++++.+++.+.+..+......+. ... +.. ..+ ++.+.+ + +.++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~---~~~-~~g~~~~-----~~~~~~---~-~~~v 69 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFV---HPN-LRGRTNL-----KFVPPE---K-LEPA 69 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGT---CGG-GTTTCCC-----BCBCGG---G-CCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHh---Cch-hcCcccc-----cccchh---H-hcCC
Confidence 3579999999999999999999988755777776643311100000 000 000 111 122222 2 4689
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|+||.+.+.. .+..+++.+.+.|+ ++|-.|+.
T Consensus 70 DvV~~a~g~~---------------~s~~~a~~~~~aG~-~VId~Sa~ 101 (345)
T 2ozp_A 70 DILVLALPHG---------------VFAREFDRYSALAP-VLVDLSAD 101 (345)
T ss_dssp SEEEECCCTT---------------HHHHTHHHHHTTCS-EEEECSST
T ss_pred CEEEEcCCcH---------------HHHHHHHHHHHCCC-EEEEcCcc
Confidence 9999887632 13456667777887 68888875
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00047 Score=66.33 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+|+|.|+|+ |++|+.++..|+..|. .+|+++|+...+............. ....++.....|. ++++++
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~-~~~~~v~i~~~~~-------~a~~~a 74 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA-FAPQPVKTSYGTY-------EDCKDA 74 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG-GSSSCCEEEEECG-------GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc-cccCCeEEEeCcH-------HHhCCC
Confidence 4689999996 9999999999999985 2899999865421100000000000 1112445444442 357789
Q ss_pred CEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||.+++.+... .+....+..|....+.+++++.+...+ .++.+|.
T Consensus 75 DvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 75 DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 9999999954432 334567889999999999999988643 4555553
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00036 Score=68.19 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
|+..+.|+++|.|.||+|++|+.+++.|.+++..+|+.+.+
T Consensus 1 m~~~~~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 1 MSKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CCCcccccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 54444344799999999999999999999876558887764
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00045 Score=64.59 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+|+||.|+|++|.+|+.+++.+.+....+++. ++|..+..... + ..+.. ..+++.. .+++.+++++
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~-d----~gel~g~~~gv~v-------~~dl~~ll~~ 73 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ-D----AGAFLGKQTGVAL-------TDDIERVCAE 73 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS-B----TTTTTTCCCSCBC-------BCCHHHHHHH
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc-c----HHHHhCCCCCcee-------cCCHHHHhcC
Confidence 46899999999999999999999875456655 57764311100 0 01100 0112211 1234555667
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+|+||++.. ...+...++.|.++|+ ++|
T Consensus 74 ~DVVIDfT~---------------p~a~~~~~~~al~~G~-~vV 101 (272)
T 4f3y_A 74 ADYLIDFTL---------------PEGTLVHLDAALRHDV-KLV 101 (272)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHHTC-EEE
T ss_pred CCEEEEcCC---------------HHHHHHHHHHHHHcCC-CEE
Confidence 999998863 2234456667777776 444
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00037 Score=69.50 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 85 (467)
..++|+|+|. |-+|+.+++.|.+.|+ .|+++++++... +.....++..+.||.++++.|.++ ++++
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~-~vvvId~d~~~v-----------~~~~~~g~~vi~GDat~~~~L~~agi~~A 69 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGV-KMVVLDHDPDHI-----------ETLRKFGMKVFYGDATRMDLLESAGAAKA 69 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCHHHH-----------HHHHHTTCCCEESCTTCHHHHHHTTTTTC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEECCHHHH-----------HHHHhCCCeEEEcCCCCHHHHHhcCCCcc
Confidence 4578999997 9999999999999995 999999987521 111224678899999999999887 7789
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~ 125 (467)
|+||-+... -.....++..+++.+.+
T Consensus 70 ~~viv~~~~--------------~~~n~~i~~~ar~~~p~ 95 (413)
T 3l9w_A 70 EVLINAIDD--------------PQTNLQLTEMVKEHFPH 95 (413)
T ss_dssp SEEEECCSS--------------HHHHHHHHHHHHHHCTT
T ss_pred CEEEECCCC--------------hHHHHHHHHHHHHhCCC
Confidence 999855531 12234466667766654
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0019 Score=62.95 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+++|.|.||||++|+.|++.|.++++. +++.+....+. .+.....+.....-++.. + .++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~sa-----------G~~~~~~~~~~~~~~~~~-~----~~~~~ 65 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-----------GKSLKFKDQDITIEETTE-T----AFEGV 65 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTT-----------TCEEEETTEEEEEEECCT-T----TTTTC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccC-----------CCcceecCCCceEeeCCH-H----HhcCC
Confidence 579999999999999999999887542 55555433220 000001112222223321 1 24689
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|+||-+.+ ...+...+..+.+.|+ ++|=.|+.
T Consensus 66 Dvvf~a~~---------------~~~s~~~a~~~~~~G~-~vIDlSa~ 97 (366)
T 3pwk_A 66 DIALFSAG---------------SSTSAKYAPYAVKAGV-VVVDNTSY 97 (366)
T ss_dssp SEEEECSC---------------HHHHHHHHHHHHHTTC-EEEECSST
T ss_pred CEEEECCC---------------hHhHHHHHHHHHHCCC-EEEEcCCc
Confidence 99998775 1224556666677787 67777775
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00032 Score=71.05 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 85 (467)
..|+|+|.|+ |-+|++|++.|.++|| +|+++++++... .......++..+.||-++++.|.++ ++.+
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~-~v~vId~d~~~~----------~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENN-DITIVDKDGDRL----------RELQDKYDLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTE-EEEEEESCHHHH----------HHHHHHSSCEEEESCTTCHHHHHHHTTTTC
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC-CEEEEECCHHHH----------HHHHHhcCcEEEEEcCCCHHHHHhcCCCcC
Confidence 4589999988 9999999999999994 999999987521 1111123678999999999999887 6789
Q ss_pred CEEEE
Q 012270 86 STVFY 90 (467)
Q Consensus 86 D~Vih 90 (467)
|++|-
T Consensus 70 d~~ia 74 (461)
T 4g65_A 70 DMLVA 74 (461)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99883
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=63.43 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC--CcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+|++|.|.||+|++|+.+++.|.+++ ..+++.+....+.. +. +. .....+.+ .|+ |++ .+.+
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G----~~---~~--~~~~~i~~--~~~-~~~----~~~~ 65 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEG----KT---YR--FNGKTVRV--QNV-EEF----DWSQ 65 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTT----CE---EE--ETTEEEEE--EEG-GGC----CGGG
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCC----Cc---ee--ecCceeEE--ecC-ChH----HhcC
Confidence 46899999999999999999999883 24677665322100 00 00 11112222 232 122 2358
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|+||-+.+. ..+...+..+.+.|+ ++|-.|+.
T Consensus 66 vDvVf~a~g~---------------~~s~~~a~~~~~~G~-~vId~s~~ 98 (336)
T 2r00_A 66 VHIALFSAGG---------------ELSAKWAPIAAEAGV-VVIDNTSH 98 (336)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred CCEEEECCCc---------------hHHHHHHHHHHHcCC-EEEEcCCc
Confidence 9999977651 124566777778887 67878876
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0017 Score=62.41 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
++|+|.|+|+ |++|..++..|+..|. .+|+++|..+.+....... +.+.. ...++.... .+ .+++++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~d---l~~~~~~~~~~~i~~---~~----~~a~~~ 74 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD---INHGLPFMGQMSLYA---GD----YSDVKD 74 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH---HTTSCCCTTCEEEC-----C----GGGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH---HHHhHHhcCCeEEEE---CC----HHHhCC
Confidence 4578999998 9999999999999884 2899999976421110000 11110 012333322 22 335789
Q ss_pred CCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 85 ASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+|+||.+++.+.. ..........|+.....+++.+.+....-+|.+.|
T Consensus 75 aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 75 CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999999985432 22334567888888999999998875433343333
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00087 Score=64.77 Aligned_cols=113 Identities=7% Similarity=0.040 Sum_probs=69.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC-CCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+|+|.|+|| |.+|..++..|...|+.+|+++|+++......... ...........++.. . .| ++++++++|
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t---~d---~~ea~~~aD 80 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E---YS---YEAALTGAD 80 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E---CS---HHHHHTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e---CC---HHHHhCCCC
Confidence 479999998 99999999999999953799999976421110000 000000011122222 1 23 345788999
Q ss_pred EEEEcccCCCCC-C-----ChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 87 TVFYVDATDLNT-D-----DFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 87 ~Vih~aa~~~~~-~-----~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+||-+++.+... . ........|..-.+.+.+.+.+...+-++
T Consensus 81 iVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~v 128 (331)
T 1pzg_A 81 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 128 (331)
T ss_dssp EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 999999744321 1 23445667788888888888877533333
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=63.07 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC---cCCC-CCeEEEEecCCCHHHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSS-GRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~-~~v~~~~~Dl~d~~~l~~~~ 82 (467)
.|++|.|.||||++|+.|++.|.++...++..+.+..+.....+. +.+ .+.. ....+... .+.++ +.
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~----~~~~~p~~~~~~~~~v~~~--~~~~~---~~ 73 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL----ISDLHPQLKGIVELPLQPM--SDISE---FS 73 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSB----HHHHCGGGTTTCCCBEEEE--SSGGG---TC
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCc----hHHhCccccCccceeEecc--CCHHH---Hh
Confidence 468999999999999999999998765677777554310000000 000 0111 12222222 02221 22
Q ss_pred hCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+++|+||-+.+ ...+...+..+.+.|+ ++|=.|+.
T Consensus 74 ~~~Dvvf~a~p---------------~~~s~~~~~~~~~~g~-~vIDlSa~ 108 (337)
T 3dr3_A 74 PGVDVVFLATA---------------HEVSHDLAPQFLEAGC-VVFDLSGA 108 (337)
T ss_dssp TTCSEEEECSC---------------HHHHHHHHHHHHHTTC-EEEECSST
T ss_pred cCCCEEEECCC---------------hHHHHHHHHHHHHCCC-EEEEcCCc
Confidence 68999997764 1223456666677787 67878876
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00057 Score=66.77 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=58.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
++|.|.||+|++|+.+++.|.++++.+++.+.+..+......... .. + .+.. ..|+.-.+ .+.++++|+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~---~~-~--~~~v--~~dl~~~~--~~~~~~vDvV 86 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVF---PH-L--RAQK--LPTLVSVK--DADFSTVDAV 86 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHC---GG-G--TTSC--CCCCBCGG--GCCGGGCSEE
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhC---ch-h--cCcc--cccceecc--hhHhcCCCEE
Confidence 589999999999999999999887557777765432110000000 00 0 0100 12332222 3345689999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|-+.+... +...+..+ +.|+ ++|-.|+.
T Consensus 87 f~atp~~~---------------s~~~a~~~-~aG~-~VId~sa~ 114 (359)
T 1xyg_A 87 FCCLPHGT---------------TQEIIKEL-PTAL-KIVDLSAD 114 (359)
T ss_dssp EECCCTTT---------------HHHHHHTS-CTTC-EEEECSST
T ss_pred EEcCCchh---------------HHHHHHHH-hCCC-EEEECCcc
Confidence 98876322 24556666 7787 68877775
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0001 Score=66.42 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=31.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|+|+||+|++|+.+++.|.+.|+ +|++++|++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~~ 35 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence 5899999999999999999999995 9999999764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.002 Score=61.46 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=74.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEe-cCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL-GK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV-DVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~-g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-Dl~d~~~l~~~~~~~ 85 (467)
|||.|+||+|.+|+.++..|..+ +. .+++++|+.+. ....... +.+. ......... .-.+ .++++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~-~~G~a~D---l~~~--~~~~~v~~~~~~~~----~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVD---LSHI--PTAVKIKGFSGEDA----TPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT-HHHHHHH---HHTS--CSSEEEEEECSSCC----HHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC-chhHHHH---hhCC--CCCceEEEecCCCc----HHHhCCC
Confidence 68999999999999999998876 42 38999998752 1000000 1111 112222211 1112 4567899
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||-+|+.+. ...+....++.|..-.+.+.+++.+...+ .++.+|.
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999999543 23445678899999999999999887543 5555554
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00063 Score=65.90 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=67.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D 86 (467)
.++++|.|+ |-+|+.+++.|.++| + |+++++++... + ....++..+.||.+|++.+.++ ++++|
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~~~~-----------~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~ 179 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVRK-----------K-VLRSGANFVHGDPTRVSDLEKANVRGAR 179 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGGGHH-----------H-HHHTTCEEEESCTTSHHHHHHTCSTTEE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCChhhh-----------h-HHhCCcEEEEeCCCCHHHHHhcChhhcc
Confidence 358999997 999999999999999 6 99999877521 1 2235789999999999999887 78899
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEE
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v 128 (467)
+|+-+.+. . +.| ..+...+++.+.+ +++
T Consensus 180 ~vi~~~~~------d----~~n----~~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 180 AVIVDLES------D----SET----IHCILGIRKIDESVRII 208 (336)
T ss_dssp EEEECCSS------H----HHH----HHHHHHHHTTCTTSEEE
T ss_pred EEEEcCCc------c----HHH----HHHHHHHHHHCCCCeEE
Confidence 99855431 1 223 3455667777765 443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00042 Score=68.16 Aligned_cols=76 Identities=22% Similarity=0.237 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++|+|+|+ |-+|+.+++.|...|. +|++++|++.... . ..+.. +.. +.+|..+.+++.+++.++|
T Consensus 165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~----~---~~~~~---g~~-~~~~~~~~~~l~~~~~~~D 231 (369)
T 2eez_A 165 APASVVILGG-GTVGTNAAKIALGMGA-QVTILDVNHKRLQ----Y---LDDVF---GGR-VITLTATEANIKKSVQHAD 231 (369)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHH----H---HHHHT---TTS-EEEEECCHHHHHHHHHHCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCHHHHH----H---HHHhc---Cce-EEEecCCHHHHHHHHhCCC
Confidence 4689999999 9999999999999995 9999999764110 0 00001 111 4567888888999999999
Q ss_pred EEEEcccCC
Q 012270 87 TVFYVDATD 95 (467)
Q Consensus 87 ~Vih~aa~~ 95 (467)
+||++++..
T Consensus 232 vVi~~~g~~ 240 (369)
T 2eez_A 232 LLIGAVLVP 240 (369)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 999998843
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00077 Score=64.74 Aligned_cols=116 Identities=9% Similarity=0.027 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+|+|.|+|+ |.+|+.++..|+..|.. +++++|+.+.+............... .++....+| .++++++
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~--~~~~i~~~~-------~~a~~~a 77 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFT--SPKKIYSAE-------YSDAKDA 77 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGS--CCCEEEECC-------GGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhc--CCcEEEECc-------HHHhcCC
Confidence 4679999996 99999999999998852 89999986532110000000001111 244444333 2357889
Q ss_pred CEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||.+|+.+.. ..+....++.|+.-.+.+.+.+.+...+ .++.+|.
T Consensus 78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp SEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 999999995432 2234456788988899999999888543 4444443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0015 Score=60.38 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CCC--------CcC--CCCC--eEEEEec
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLP--------DSL--SSGR--AEYHQVD 71 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~~--------~~~--~~~~--v~~~~~D 71 (467)
.++|+|.|+ |-+|+++++.|.+.|..+++++|++.-...+..++.- ... +.+ ..+. ++.+..+
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 468999987 8999999999999995589999997632111111100 000 000 0123 4444555
Q ss_pred CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
+. .+.+.+.++++|+||.+.. +++ .-..+.++|++.++ .+|+.+...
T Consensus 110 ~~-~~~~~~~~~~~DvVi~~~d------~~~--------~~~~l~~~~~~~~~-p~i~~~~~g 156 (249)
T 1jw9_B 110 LD-DAELAALIAEHDLVLDCTD------NVA--------VRNQLNAGCFAAKV-PLVSGAAIR 156 (249)
T ss_dssp CC-HHHHHHHHHTSSEEEECCS------SHH--------HHHHHHHHHHHHTC-CEEEEEEEB
T ss_pred CC-HhHHHHHHhCCCEEEEeCC------CHH--------HHHHHHHHHHHcCC-CEEEeeecc
Confidence 64 4566778899999997753 111 22346677887776 477765543
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0065 Score=59.34 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh-cCC--cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLE-LGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~-~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|++|.|.||+|++|+.+++.+++ +++ -+++.+....... . .. ... +......|..|++. +++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~-----~---v~-~~~--g~~i~~~~~~~~~~----~~~ 65 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ-----A---AP-SFG--GTTGTLQDAFDLEA----LKA 65 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS-----B---CC-GGG--TCCCBCEETTCHHH----HHT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC-----C---cc-ccC--CCceEEEecCChHH----hcC
Confidence 57999999999999999995444 431 2556655432100 0 10 010 11233345556554 358
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCe
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r 126 (467)
+|+||-+.+ ...+...+..+.+.|+++
T Consensus 66 ~DvVf~a~g---------------~~~s~~~a~~~~~~G~k~ 92 (367)
T 1t4b_A 66 LDIIVTCQG---------------GDYTNEIYPKLRESGWQG 92 (367)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHTTCCC
T ss_pred CCEEEECCC---------------chhHHHHHHHHHHCCCCE
Confidence 999998776 233456777777888853
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0016 Score=62.24 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC--CccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~--~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
++++|.|+|+ |.+|+.++..|...|+.+|+++|+.+ ......... +.+. ...........+ | .+++
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~d---l~~~~~~~~~~~~i~~t~--d----~~a~ 76 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALD---MLEASPVQGFDANIIGTS--D----YADT 76 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHH---HHHHHHHHTCCCCEEEES--C----GGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhh---HHHhhhhccCCCEEEEcC--C----HHHh
Confidence 3569999997 99999999999999832899999973 210000000 0000 000111222111 2 2357
Q ss_pred hCCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 83 EGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 83 ~~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+++|+||-+++.+.. ..+....+..|..-.+.+.+.+.+...+ .++.+|.
T Consensus 77 ~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 77 ADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 789999999985432 2345667888999999999999887543 5555554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=65.03 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc---EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecC--CCHHH-HHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQ-IKKV 81 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~-l~~~ 81 (467)
.++|+|+| .|-||+.+++.|.++... .|++.|..... .+.....++++...++ .|.++ +.++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~-----------~~~~~~~g~~~~~~~Vdadnv~~~l~aL 80 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-----------VDVAQQYGVSFKLQQITPQNYLEVIGST 80 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-----------CCHHHHHTCEEEECCCCTTTHHHHTGGG
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhh-----------hhHHhhcCCceeEEeccchhHHHHHHHH
Confidence 47899999 699999999999998643 68888765431 1111111345555555 55544 4567
Q ss_pred HhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+++.|+|||++-.. ....++++|.++|+ + |++++
T Consensus 81 l~~~DvVIN~s~~~---------------~~l~Im~acleaGv-~--YlDTa 114 (480)
T 2ph5_A 81 LEENDFLIDVSIGI---------------SSLALIILCNQKGA-L--YINAA 114 (480)
T ss_dssp CCTTCEEEECCSSS---------------CHHHHHHHHHHHTC-E--EEESS
T ss_pred hcCCCEEEECCccc---------------cCHHHHHHHHHcCC-C--EEECC
Confidence 77679999866322 13568999999997 4 55665
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0035 Score=60.96 Aligned_cols=106 Identities=11% Similarity=0.087 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc-CCCCccCCCCcCCCCCC-CcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLP-DSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~-r~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
++++|.|.||+|++|+.+++.|.++...+++.+. ...+......+....+. ......+......|. |++. +++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~----~~~ 77 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVST-NYED----HKD 77 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECS-SGGG----GTT
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeC-CHHH----hcC
Confidence 4679999999999999999999887645777775 22110000000000000 000000011111333 3333 358
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+|+||-+.+. ..+..++..+.+.|+ ++|-.|+.
T Consensus 78 vDvVf~atp~---------------~~s~~~a~~~~~aG~-~VId~s~~ 110 (350)
T 2ep5_A 78 VDVVLSALPN---------------ELAESIELELVKNGK-IVVSNASP 110 (350)
T ss_dssp CSEEEECCCH---------------HHHHHHHHHHHHTTC-EEEECSST
T ss_pred CCEEEECCCh---------------HHHHHHHHHHHHCCC-EEEECCcc
Confidence 9999966541 124567778888887 47766665
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=62.57 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=74.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|+|+ |.+|..++..|...|+. +|+++|+.+......... +.+.. .......... .| .++++++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~d---l~~~~~~~~~~~~i~~t--~d----~~a~~~a 70 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD---LAHAAAGIDKYPKIVGG--AD----YSLLKGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH---HHHHHHTTTCCCEEEEE--SC----GGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHH---HHhhhhhcCCCCEEEEe--CC----HHHhCCC
Confidence 68999999 99999999999998842 899999977521000000 00000 1112232222 12 3467889
Q ss_pred CEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||.+++.+.. ..+.......|..-.+.+.+.+.+.+.+ .++.+|.
T Consensus 71 DiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 999999985532 2345567888999999999999988543 4555554
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0033 Score=60.51 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=73.4
Q ss_pred CCCCCCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 3 ~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
+...++|+|.|+|| |.+|..++..|+..+. .+++++|+...+............... .++.... | + .++
T Consensus 4 ~~~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~--~~~~i~~-~--~----~~a 73 (326)
T 2zqz_A 4 ITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFT--SPKKIYS-A--E----YSD 73 (326)
T ss_dssp --CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGS--CCCEEEE-C--C----GGG
T ss_pred cccCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhc--CCeEEEE-C--C----HHH
Confidence 44556689999999 9999999999988874 289999986532110000000000111 2344332 2 2 345
Q ss_pred HhCCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 82 LEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
++++|+||..++.+.. ...-......|+...+.+.+.+.+.... .++.+|-
T Consensus 74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7899999999985432 2233456778888889999888887532 4555543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0032 Score=59.46 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=74.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEE-ecCCCHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQ-VDVRDISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~-~Dl~d~~~l~~~~~~ 84 (467)
|||.|+|+ |.||+.++..|+.++. .++.++|..+......... +.+. .......... .|. +.+++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~D---L~h~~~~~~~~~~i~~~~d~-------~~~~~ 69 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD---LAHAAAGIDKYPKIVGGADY-------SLLKG 69 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH---HHHHHGGGTCCCEEEEESCG-------GGGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhh---hhcccccCCCCCeEecCCCH-------HHhCC
Confidence 78999995 9999999999988875 3899999865311000000 1110 0011222222 233 24678
Q ss_pred CCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+|+||-.||.+. ...+....++.|..-.+.+.+++.++..+ .++.+|.
T Consensus 70 aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 70 SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 999999999544 33456778899999999999999998654 3554554
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0012 Score=59.48 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|+|.|+| +|.+|+.+++.|.+.|+ +|++.+|++.... . ....++... .+.++++++|
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~----~-------~~~~g~~~~--------~~~~~~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGF-KVVVGSRNPKRTA----R-------LFPSAAQVT--------FQEEAVSSPE 85 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTC-CEEEEESSHHHHH----H-------HSBTTSEEE--------EHHHHTTSCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH----H-------HHHcCCcee--------cHHHHHhCCC
Confidence 568999998 79999999999999995 8999999764110 0 111134332 2455678899
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+||.+..
T Consensus 86 vVi~av~ 92 (215)
T 2vns_A 86 VIFVAVF 92 (215)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9997765
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0038 Score=59.83 Aligned_cols=116 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|+|.|+|+ |.+|..++..|+..|. .+|.++|+.+................. ...+... .| + .++++++
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~-~~~~~v~-~~--~----~~a~~~a 75 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYS-PTTVRVK-AG--E----YSDCHDA 75 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGS-SSCCEEE-EC--C----GGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhc-CCCeEEE-eC--C----HHHhCCC
Confidence 4579999999 9999999999998874 389999986531110000000000111 1233333 22 2 3457899
Q ss_pred CEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 86 STVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 86 D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
|+||-+++.+.. ..........|..-.+.+.+.+.+....-++.+.
T Consensus 76 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (317)
T 3d0o_A 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVA 122 (317)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 999999985432 2334456788888889999998888544333333
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=64.49 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---- 82 (467)
.+++++|+||+|-+|..+++.+...|. +|++++|++... +. ... .+... ..|..+.+++.+.+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~----~~---~~~----~g~~~-~~d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKE----EL---FRS----IGGEV-FIDFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHH----HH---HHH----TTCCE-EEETTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHH----HH---HHH----cCCce-EEecCccHhHHHHHHHHh
Confidence 467999999999999999999999994 999999876421 00 001 12222 24766433333332
Q ss_pred h-CCCEEEEccc
Q 012270 83 E-GASTVFYVDA 93 (467)
Q Consensus 83 ~-~~D~Vih~aa 93 (467)
. ++|+||++++
T Consensus 236 ~~~~D~vi~~~g 247 (347)
T 2hcy_A 236 DGGAHGVINVSV 247 (347)
T ss_dssp TSCEEEEEECSS
T ss_pred CCCCCEEEECCC
Confidence 2 5899999987
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0075 Score=58.21 Aligned_cols=94 Identities=19% Similarity=0.139 Sum_probs=57.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+++|.|.||||++|+.|++.|.++.+ .+++.+....+. .+...-.+.+...-|..+ + .++++
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~a-----------G~~~~~~~~~~~~~~~~~-~----~~~~~ 64 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQ-----------GRKLAFRGQEIEVEDAET-A----DPSGL 64 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTS-----------SCEEEETTEEEEEEETTT-S----CCTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccC-----------CCceeecCCceEEEeCCH-H----HhccC
Confidence 36899999999999999998888742 256666543320 000000112233333332 1 24689
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
|+||-+.+ ...++..+..+.+.|+ ++|=.|+.
T Consensus 65 Dvvf~a~~---------------~~~s~~~a~~~~~~G~-~vID~Sa~ 96 (344)
T 3tz6_A 65 DIALFSAG---------------SAMSKVQAPRFAAAGV-TVIDNSSA 96 (344)
T ss_dssp SEEEECSC---------------HHHHHHHHHHHHHTTC-EEEECSST
T ss_pred CEEEECCC---------------hHHHHHHHHHHHhCCC-EEEECCCc
Confidence 99998876 1224456666677787 67777775
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0019 Score=61.72 Aligned_cols=114 Identities=10% Similarity=0.025 Sum_probs=71.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|+|+ |.+|+.++..|+..|. .+|+++|+.+.+....... +.+. ....+......| + .++++++
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~D---L~~~~~~~~~~~~v~~~~--~----~~a~~~a 70 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALD---MRESSPIHGFDTRVTGTN--D----YGPTEDS 70 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHH---HHHHHHHHTCCCEEEEES--S----SGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHH---HhccccccCCCcEEEECC--C----HHHhCCC
Confidence 68999997 9999999999999884 2899999977421000000 0110 001123332122 2 2457789
Q ss_pred CEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||-+|+.+.. ..+....+..|..-.+.+.+.+.+...+ .++.+|.
T Consensus 71 DvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp SEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred CEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 999999985432 2334567788999999999999988543 4555543
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0091 Score=58.66 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.++++|+|+|+ |.+|+.+++.+.+.| ++|+++|..+.. +..+ . --+.+.+|..|.+.+.++++.+
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG-~~viv~d~~~~~---p~~~-------~---ad~~~~~~~~d~~~l~~~~~~~ 74 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMG-YKVVVLDPSEDC---PCRY-------V---AHEFIQAKYDDEKALNQLGQKC 74 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCTTC---TTGG-------G---SSEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEECCCCC---hhhh-------h---CCEEEECCCCCHHHHHHHHHhC
Confidence 35679999987 899999999999999 599999876541 0000 0 1246779999999999999999
Q ss_pred CEEEE
Q 012270 86 STVFY 90 (467)
Q Consensus 86 D~Vih 90 (467)
|+|..
T Consensus 75 dvi~~ 79 (377)
T 3orq_A 75 DVITY 79 (377)
T ss_dssp SEEEE
T ss_pred Cccee
Confidence 98853
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.014 Score=56.87 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=54.7
Q ss_pred CEEEEEcCCChhHHHHHH-HHHhcCC--cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVL-RLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~-~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|.||||++|+.|++ .|.++.. .++..+..+.... . +.. .... +....|..+++. ++++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~--~------~~~-~~~~--~~~~~~~~~~~~----~~~~ 65 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--P------APN-FGKD--AGMLHDAFDIES----LKQL 65 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--B------CCC-SSSC--CCBCEETTCHHH----HTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCc--C------HHH-hCCC--ceEEEecCChhH----hccC
Confidence 689999999999999999 6666541 2666554322200 0 111 1111 122224445443 4789
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
|+||-+.+. ..+...+..+.+.|++ ++|=.||.
T Consensus 66 Dvvf~a~~~---------------~~s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 66 DAVITCQGG---------------SYTEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CEEEECCCh---------------HHHHHHHHHHHHCCCCEEEEeCCch
Confidence 999988761 2244566666777875 55544543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0053 Score=58.83 Aligned_cols=116 Identities=13% Similarity=0.038 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
++|+|.|+|+ |.+|..++..|...|..+|+++|+.+......... +.+.. .......... .| .+++++
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~d---L~~~~~~~~~~~~v~~t--~d----~~a~~~ 73 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALD---LLQTCPIEGVDFKVRGT--ND----YKDLEN 73 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH---HHTTHHHHTCCCCEEEE--SC----GGGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHH---HHhhhhhcCCCcEEEEc--CC----HHHHCC
Confidence 4689999995 99999999999998832899999977521100000 11110 0112222211 12 246788
Q ss_pred CCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 85 ASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+|+||.+++.+.. ..+....+..|+...+.+++.+.+...+ .++.+|.
T Consensus 74 aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 74 SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999999985432 2334556788999999999999887643 5555553
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0035 Score=60.13 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEE-EecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYH-QVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~-~~Dl~d~~~l~~~~~ 83 (467)
++|+|.|+|+ |.+|..++..|...|+.+|+++|+.+......... +.+. ......... ..|. ++++
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~d---l~~~~~~~~~~~~v~~t~d~-------~a~~ 74 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLD---IAESSPVDGFDAKFTGANDY-------AAIE 74 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH---HHHHHHHHTCCCCEEEESSG-------GGGT
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHH---HhchhhhcCCCCEEEEeCCH-------HHHC
Confidence 4679999998 99999999999999832899999977521000000 1110 000122222 2231 4678
Q ss_pred CCCEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 84 GASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 84 ~~D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
++|+||.+++.+.. ..+....+..|+.-.+.+.+.+.+...+ .++.+|.
T Consensus 75 ~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 75 GADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp TCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 89999999985432 1233456778999999999998887543 5555554
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.019 Score=56.06 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCChhHHHHHH-HHHhcCC--cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVL-RLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~-~Ll~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
..++|.|.||||++|+.|++ .|.++.. .++..+..+... .. +.. .... .....|..+.+. ++
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG----~~----~~~-~~~~--~~~v~~~~~~~~----~~ 67 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAG----GK----APS-FAKN--ETTLKDATSIDD----LK 67 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTT----SB----CCT-TCCS--CCBCEETTCHHH----HH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcC----CC----HHH-cCCC--ceEEEeCCChhH----hc
Confidence 35799999999999999999 6665541 256665433210 00 111 1111 122234545443 46
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
++|+||-+.+. ..+...+..+.+.|++ ++|=.|+.
T Consensus 68 ~vDvvf~a~~~---------------~~s~~~~~~~~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 68 KCDVIITCQGG---------------DYTNDVFPKLRAAGWNGYWIDAASS 103 (377)
T ss_dssp TCSEEEECSCH---------------HHHHHHHHHHHHTTCCSEEEECSST
T ss_pred CCCEEEECCCh---------------HHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 89999988761 2245566667777885 55555543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0012 Score=63.89 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---- 82 (467)
.+++++|+||+|-||..+++.+.+.|. +|+++++++..... . . ..+.. ...|.++.+++.+.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~-------~-~---~~g~~-~~~d~~~~~~~~~~~~~~~ 211 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAY-------L-K---QIGFD-AAFNYKTVNSLEEALKKAS 211 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHH-------H-H---HTTCS-EEEETTSCSCHHHHHHHHC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-------H-H---hcCCc-EEEecCCHHHHHHHHHHHh
Confidence 467999999999999999999999994 99999986541100 0 0 01222 234776522233222
Q ss_pred -hCCCEEEEccc
Q 012270 83 -EGASTVFYVDA 93 (467)
Q Consensus 83 -~~~D~Vih~aa 93 (467)
.++|+||++++
T Consensus 212 ~~~~d~vi~~~g 223 (333)
T 1v3u_A 212 PDGYDCYFDNVG 223 (333)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCCeEEEECCC
Confidence 25899999997
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0024 Score=60.96 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+++++|+|+ |-+|+.++..|.+.|..+|++++|+.... ...++ +.... ...+......++.+.+++.+.+.++
T Consensus 153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~-~~a~~---la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 227 (315)
T 3tnl_A 153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFY-ANAEK---TVEKINSKTDCKAQLFDIEDHEQLRKEIAES 227 (315)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTH-HHHHH---HHHHHHHHSSCEEEEEETTCHHHHHHHHHTC
T ss_pred cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchH-HHHHH---HHHHhhhhcCCceEEeccchHHHHHhhhcCC
Confidence 5789999997 89999999999999944899999983200 00000 00000 0112344556788888888888899
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+||++..
T Consensus 228 DiIINaTp 235 (315)
T 3tnl_A 228 VIFTNATG 235 (315)
T ss_dssp SEEEECSS
T ss_pred CEEEECcc
Confidence 99998876
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0053 Score=59.34 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=74.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC------cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
..||.|+||+|.||+.|+..|..... .++.++|..+.......... .+.+...+.....+.++ | ..++
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~-DL~~~~~~~~~~~~~~~--~---~~~a 97 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEA-ELEDCAFPLLDKVVVTA--D---PRVA 97 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHHTTCTTEEEEEEES--C---HHHH
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhh-hhhhcCccCCCcEEEcC--C---hHHH
Confidence 34899999999999999988776432 16899997653110000000 01111111112222221 2 3567
Q ss_pred HhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcCc
Q 012270 82 LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTA 133 (467)
Q Consensus 82 ~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS~ 133 (467)
++++|+||-+||.+. ....-...++.|..-.+.+.+++.+... -+++.+|..
T Consensus 98 ~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 98 FDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 899999999999543 2345567889999999999999887532 256666653
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.062 Score=49.46 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=68.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----CCCCCc--------C--CCCCeE--EEEec
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLPDS--------L--SSGRAE--YHQVD 71 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----~~~~~~--------~--~~~~v~--~~~~D 71 (467)
..+|+|.|+ |-+|+++++.|...|..+++++|++.-...+..++. ...... + ..+.++ .+..+
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 106 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR 106 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 568999998 669999999999999668999998753211111110 000000 0 013333 33334
Q ss_pred CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
+ +.+.+.+.++++|+||.+.. +. ..-..+-++|.+.++ .+|+.+....+
T Consensus 107 ~-~~~~~~~~~~~~DvVi~~~d------~~--------~~r~~l~~~~~~~~~-p~i~~~~~g~~ 155 (251)
T 1zud_1 107 L-TGEALKDAVARADVVLDCTD------NM--------ATRQEINAACVALNT-PLITASAVGFG 155 (251)
T ss_dssp C-CHHHHHHHHHHCSEEEECCS------SH--------HHHHHHHHHHHHTTC-CEEEEEEEBTE
T ss_pred C-CHHHHHHHHhcCCEEEECCC------CH--------HHHHHHHHHHHHhCC-CEEEEeccccc
Confidence 4 44667788889999997642 11 122356678888776 47777665443
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0021 Score=61.71 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
++++|.|+|+ |.+|..++..|+..|. .+|+++|+++......... +.+. .....+.... | + .++++
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~d---l~~~~~~~~~~~~i~~-~--~----~~al~ 73 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD---FNHGKVFAPKPVDIWH-G--D----YDDCR 73 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHHHTTSSSSCCEEEE-C--C----GGGTT
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhh---HHHHhhhcCCCeEEEc-C--c----HHHhC
Confidence 5679999999 9999999999988773 3899999976411100000 1110 1111344432 2 2 23577
Q ss_pred CCCEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEc
Q 012270 84 GASTVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~S 131 (467)
++|+||-+++..... .........|..-...+++.+.+...+ .++.+|
T Consensus 74 ~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 899999999844321 122345677888888888888877543 344333
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0035 Score=61.07 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
++++|.|.||||++|+.|++.|.++...++..+..
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S 40 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAG 40 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEEC
Confidence 45799999999999999999888766447776644
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0035 Score=61.07 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
++++|.|.||||++|+.|++.|.++...++..+..
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S 40 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAG 40 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEEC
Confidence 45799999999999999999888766447776644
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0017 Score=62.25 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+.|+|.|+|| |.+|..++..|+..+. .+++++|+.+.+............... .++.... | + .++++++
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~--~~~~v~~-~--~----~~a~~~a 73 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFT--APKKIYS-G--E----YSDCKDA 73 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGS--CCCEEEE-C--C----GGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhc--CCeEEEE-C--C----HHHhCCC
Confidence 3479999999 9999999999998874 289999986532110000000000111 2344332 2 2 3457899
Q ss_pred CEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||..++.+... ..-......|+...+.+.+.+.+.... .++.+|-
T Consensus 74 DvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp SEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 9999999854321 222345678888999999999888543 4555443
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0075 Score=57.95 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
..+++|.|+|+ |.+|+.++..|+.+|. .+|+++|+........... +.+.. .......+.. .|.+ .++
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~D---L~~~~~~~~~~~i~~~--~d~~----~~~ 86 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMD---LQHGSLFLKTPKIVSS--KDYS----VTA 86 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH---HHHTGGGCSCCEEEEC--SSGG----GGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHh---hhhhhhccCCCeEEEc--CCHH----HhC
Confidence 45689999997 9999999999999884 2899999865311000000 01100 0111122222 1222 477
Q ss_pred CCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
++|+||.+||... ...+....++.|..-.+.+.+.+.++..+ .++.+|.
T Consensus 87 ~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 87 NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp TEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 8999999999543 22345567899999999999999887533 5555554
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=62.32 Aligned_cols=74 Identities=20% Similarity=0.144 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHH---HHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ---IKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~ 83 (467)
.+++|+|+||+|-+|..+++.+...| .+|+++++++.... . .. ..+... ..|..+.+. +.+...
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~-~------~~----~~ga~~-~~d~~~~~~~~~~~~~~~ 236 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQK-I------VL----QNGAHE-VFNHREVNYIDKIKKYVG 236 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHH-H------HH----HTTCSE-EEETTSTTHHHHHHHHHC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHH-H------HH----HcCCCE-EEeCCCchHHHHHHHHcC
Confidence 46799999999999999999999999 59999998764110 0 00 012222 246655433 333333
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+||++++
T Consensus 237 ~~~~D~vi~~~G 248 (351)
T 1yb5_A 237 EKGIDIIIEMLA 248 (351)
T ss_dssp TTCEEEEEESCH
T ss_pred CCCcEEEEECCC
Confidence 5899999987
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.025 Score=55.69 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|+|+ |.+|+.+++.+.+.| ++|+++|..+.. +.. .---..+..|..|.+.+.++++.+
T Consensus 12 ~~~k~IlIlG~-G~~g~~la~aa~~~G-~~vi~~d~~~~~---~~~----------~~ad~~~~~~~~d~~~l~~~~~~~ 76 (389)
T 3q2o_A 12 LPGKTIGIIGG-GQLGRMMALAAKEMG-YKIAVLDPTKNS---PCA----------QVADIEIVASYDDLKAIQHLAEIS 76 (389)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSTTC---TTT----------TTCSEEEECCTTCHHHHHHHHHTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCCCCC---chH----------HhCCceEecCcCCHHHHHHHHHhC
Confidence 35679999987 889999999999999 599999876531 000 001235668999999999999999
Q ss_pred CEEE
Q 012270 86 STVF 89 (467)
Q Consensus 86 D~Vi 89 (467)
|+|.
T Consensus 77 dvI~ 80 (389)
T 3q2o_A 77 DVVT 80 (389)
T ss_dssp SEEE
T ss_pred CEee
Confidence 9884
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0013 Score=63.24 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHH---HHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK---KVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~---~~~~ 83 (467)
.+++++|+||+|-||..+++.+...| .+|+++++++.... . ..+ .+... ..|..+.+..+ +...
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~----~---~~~----~g~~~-~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQ----S---ALK----AGAWQ-VINYREEDLVERLKEITG 206 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHH----H---HHH----HTCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHH----H---HHH----cCCCE-EEECCCccHHHHHHHHhC
Confidence 46799999999999999999999999 49999998754110 0 001 11222 24665543333 3332
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+||++++
T Consensus 207 ~~~~D~vi~~~g 218 (327)
T 1qor_A 207 GKKVRVVYDSVG 218 (327)
T ss_dssp TCCEEEEEECSC
T ss_pred CCCceEEEECCc
Confidence 5899999997
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0056 Score=58.76 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC-CCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+|+|.|+|| |.+|..++..|...|+.+|+++|+++......... ...........++.. ..|+ ++++++
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~al~~a 73 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNTY-------DDLAGA 73 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECCG-------GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE-CCCH-------HHhCCC
Confidence 3579999998 99999999999999953799999876421100000 000000011122222 1232 357889
Q ss_pred CEEEEcccCCCCCC-C-----hhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLNTD-D-----FYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~~~-~-----~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||-+++.+.... . -......|..-.+.+.+.+.+...+ .++.+|.
T Consensus 74 D~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999997443211 1 2344566777777888777776433 3444443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0066 Score=57.78 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=64.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
|+|.|+|+ |.+|..++..|...|+. +|+++|+++................. ........ +. ++++++|+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~--~~~~i~~~---~~----~a~~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVS--HGTRVWHG---GH----SELADAQV 70 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTT--SCCEEEEE---CG----GGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhc--CCeEEEEC---CH----HHhCCCCE
Confidence 58999998 99999999999999832 89999997642110000000000111 22333222 32 35778999
Q ss_pred EEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEc
Q 012270 88 VFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (467)
Q Consensus 88 Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~S 131 (467)
||.+++.+.. ..........|....+.+++.+.+.... .++.+|
T Consensus 71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp EEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9999974321 1222345577888888888888876433 344444
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.011 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 18 GFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 18 GfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|-.|.+++++++++| ++|+++.+..+
T Consensus 65 GkmG~aiAe~~~~~G-a~V~lv~g~~s 90 (313)
T 1p9o_A 65 GRRGATSAEAFLAAG-YGVLFLYRARS 90 (313)
T ss_dssp CHHHHHHHHHHHHTT-CEEEEEEETTS
T ss_pred cHHHHHHHHHHHHCC-CEEEEEecCCC
Confidence 889999999999999 59999988654
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.011 Score=56.78 Aligned_cols=92 Identities=18% Similarity=0.119 Sum_probs=53.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|+|.|.||+|++|+.+++.|.+++|. ++..+..... .. ..+. .....+.+. +. +++ . + ++|
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~------~g-~~l~--~~g~~i~v~--~~-~~~---~-~-~~D 63 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRS------AG-VRLA--FRGEEIPVE--PL-PEG---P-L-PVD 63 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGG------SS-CEEE--ETTEEEEEE--EC-CSS---C-C-CCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeecccc------CC-CEEE--EcCceEEEE--eC-Chh---h-c-CCC
Confidence 57999999999999999999987752 3333321111 00 0000 001122222 22 222 1 3 899
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+||-+.+. ..++..+....+.|+ ++|-.|+.
T Consensus 64 vV~~a~g~---------------~~s~~~a~~~~~~G~-~vId~s~~ 94 (331)
T 2yv3_A 64 LVLASAGG---------------GISRAKALVWAEGGA-LVVDNSSA 94 (331)
T ss_dssp EEEECSHH---------------HHHHHHHHHHHHTTC-EEEECSSS
T ss_pred EEEECCCc---------------cchHHHHHHHHHCCC-EEEECCCc
Confidence 99987762 223455566667787 68888876
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0047 Score=59.03 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=67.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|+|.|+|+ |.+|..++..|.+. | ++|+++|+++......... +.+.. .......... .|.+ + +++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g-~~V~l~D~~~~~~~~~~~~---l~~~~~~~~~~~~i~~t--~d~~---~-l~~ 69 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLA-RELVLLDVVEGIPQGKALD---MYESGPVGLFDTKVTGS--NDYA---D-TAN 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSSSSHHHHHHHH---HHTTHHHHTCCCEEEEE--SCGG---G-GTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCChhHHHHHHHh---HHhhhhcccCCcEEEEC--CCHH---H-HCC
Confidence 58999998 99999999999885 6 4999999976421100000 00000 0011122111 2322 2 678
Q ss_pred CCEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEc
Q 012270 85 ASTVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (467)
Q Consensus 85 ~D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~S 131 (467)
+|+||-+++.+... .........|..-...+.+.+.+...+ .++.+|
T Consensus 70 aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 99999998854322 224456667888888888888776433 444443
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.002 Score=62.55 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++|+|+||+|-+|..+++.+...|. +|+++++++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~ 191 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKE 191 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence 467999999999999999999999994 9999998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0019 Score=62.33 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~ 83 (467)
.+++++|+||+|-||..+++.+...|. +|++++|++.... . ..+ . +... ..|.++.+ ++.+...
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~----~---~~~-~---g~~~-~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAE----T---ARK-L---GCHH-TINYSTQDFAEVVREITG 211 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHH----H---HHH-H---TCSE-EEETTTSCHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHH----H---HHH-c---CCCE-EEECCCHHHHHHHHHHhC
Confidence 467999999999999999999999994 9999998763110 0 001 1 1222 23665533 3333332
Q ss_pred --CCCEEEEcccC
Q 012270 84 --GASTVFYVDAT 94 (467)
Q Consensus 84 --~~D~Vih~aa~ 94 (467)
++|+||++++.
T Consensus 212 ~~~~d~vi~~~g~ 224 (333)
T 1wly_A 212 GKGVDVVYDSIGK 224 (333)
T ss_dssp TCCEEEEEECSCT
T ss_pred CCCCeEEEECCcH
Confidence 58999999983
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.016 Score=48.19 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGat---GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.+++|.|.|++ |-+|+.+++.|++.| ++|+.+++..... .++..+ .++ .++.+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vnp~~~~i----------------~G~~~~-~s~------~el~~ 68 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPNYDEI----------------EGLKCY-RSV------RELPK 68 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEE----------------TTEECB-SSG------GGSCT
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeCCCCCeE----------------CCeeec-CCH------HHhCC
Confidence 46799999997 999999999999999 5888777653200 122211 122 22233
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
.+|+|+-+.. ......+++.|.+.|++.++..+|
T Consensus 69 ~vDlvii~vp---------------~~~v~~v~~~~~~~g~~~i~~~~~ 102 (138)
T 1y81_A 69 DVDVIVFVVP---------------PKVGLQVAKEAVEAGFKKLWFQPG 102 (138)
T ss_dssp TCCEEEECSC---------------HHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCEEEEEeC---------------HHHHHHHHHHHHHcCCCEEEEcCc
Confidence 6898885542 123345666677788877665443
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=61.58 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEE
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~ 39 (467)
+++++|.|.||||++|+.|++.|.++...++..+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l 50 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHAL 50 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEE
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEe
Confidence 3456899999999999999998888764477554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.014 Score=58.99 Aligned_cols=104 Identities=12% Similarity=0.127 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~ 85 (467)
..++|+|.|| |-+|..+++.|. ++ +.|.++.+++...... .+. .++...+.||-+|++-|.++ ++.+
T Consensus 234 ~~~~v~I~Gg-G~ig~~lA~~L~-~~-~~v~iIE~d~~r~~~l-------a~~--l~~~~Vi~GD~td~~~L~ee~i~~~ 301 (461)
T 4g65_A 234 PYRRIMIVGG-GNIGASLAKRLE-QT-YSVKLIERNLQRAEKL-------SEE--LENTIVFCGDAADQELLTEENIDQV 301 (461)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHT-TT-SEEEEEESCHHHHHHH-------HHH--CTTSEEEESCTTCHHHHHHTTGGGC
T ss_pred cccEEEEEcc-hHHHHHHHHHhh-hc-CceEEEecCHHHHHHH-------HHH--CCCceEEeccccchhhHhhcCchhh
Confidence 3578999987 999999999875 45 5899998876522111 111 25688999999999988766 6789
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
|+++-+-+-+ +.|+.. .-.|++.|++|.|-.=.-..|
T Consensus 302 D~~ia~T~~D----------e~Ni~~----~llAk~~gv~kvIa~vn~~~~ 338 (461)
T 4g65_A 302 DVFIALTNED----------ETNIMS----AMLAKRMGAKKVMVLIQRGAY 338 (461)
T ss_dssp SEEEECCSCH----------HHHHHH----HHHHHHTTCSEEEEECSCHHH
T ss_pred cEEEEcccCc----------HHHHHH----HHHHHHcCCccccccccccch
Confidence 9999443211 556543 345678899988754443333
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.02 Score=56.81 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=52.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
+++|+|+|| |.+|+.+++.+.+.| ++|++++ .+.. +..+ .. .....+.+|..|.+.+.++++.+|+
T Consensus 24 ~~~I~ilGg-G~lg~~l~~aa~~lG-~~v~~~d-~~~~---p~~~---~a-----d~~~~~~~~~~d~~~l~~~a~~~d~ 89 (403)
T 3k5i_A 24 SRKVGVLGG-GQLGRMLVESANRLN-IQVNVLD-ADNS---PAKQ---IS-----AHDGHVTGSFKEREAVRQLAKTCDV 89 (403)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEE-STTC---TTGG---GC-----CSSCCEESCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEE-CCCC---cHHH---hc-----cccceeecCCCCHHHHHHHHHhCCE
Confidence 579999997 899999999999999 5999998 5420 1000 11 1124567899999999999999998
Q ss_pred EEE
Q 012270 88 VFY 90 (467)
Q Consensus 88 Vih 90 (467)
|+-
T Consensus 90 i~~ 92 (403)
T 3k5i_A 90 VTA 92 (403)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.02 Score=53.65 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEE-EEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~-~~~r~~ 43 (467)
+++||.|.|++|-+|+.+++.+.+....+++ +++|..
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~ 57 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKG 57 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTT
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 4569999999999999999999876534544 446654
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.026 Score=51.71 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=26.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CCcEEEE-EcC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRV-TDS 41 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~-~~r 41 (467)
|+|.|.|++|-+|+.+++.+.+. ++ ++++ +++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~-elva~~d~ 34 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDL-TLSAELDA 34 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTC-EEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEcc
Confidence 58999999999999999999876 64 6664 444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.013 Score=55.59 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++++|.|+||.|.+|+.++..|.+.|+ +|++++|++. ....++++++|
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~~~-------------------------------~~~~~~~~~aD 67 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGY-PISILDREDW-------------------------------AVAESILANAD 67 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCG-------------------------------GGHHHHHTTCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECCcc-------------------------------cCHHHHhcCCC
Confidence 456899999899999999999999995 9999987643 02456778899
Q ss_pred EEEEcc
Q 012270 87 TVFYVD 92 (467)
Q Consensus 87 ~Vih~a 92 (467)
+||-+.
T Consensus 68 vVilav 73 (298)
T 2pv7_A 68 VVIVSV 73 (298)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 999665
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.012 Score=55.30 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCC---CC------------CcCCCCCeEEEEec
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL---LP------------DSLSSGRAEYHQVD 71 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~---~~------------~~~~~~~v~~~~~D 71 (467)
...+|+|.|+ |-+|+.+++.|.+.|.-+++++|.+.-...+..++... .. .....-+++.+..+
T Consensus 35 ~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 35 RTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred hCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 3568999987 99999999999999966899999876322111111000 00 00111234555667
Q ss_pred CCCHHHHHHHH-----------hCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 72 VRDISQIKKVL-----------EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 72 l~d~~~l~~~~-----------~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+.+.+.+.+.+ +++|+||.+.- +. ..-..+-++|.+.++ .+|+.+.
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D------n~--------~~R~~in~~c~~~~~-Pli~~gv 170 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD------NF--------EARMTINTACNELGQ-TWMESGV 170 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS------SH--------HHHHHHHHHHHHHTC-CEEEEEE
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCc------ch--------hhhhHHHHHHHHhCC-CEEEeee
Confidence 77666666655 57999996652 22 222346678888887 4776654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0039 Score=60.19 Aligned_cols=75 Identities=15% Similarity=-0.017 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~---- 82 (467)
.+++|+|+||+|-||...++.+...|. +|+++++++..... . ...-+... ..|..+.+..+.+.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~-------~---~~~~g~~~-~~~~~~~~~~~~~~~~~~ 216 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF-------L---VEELGFDG-AIDYKNEDLAAGLKRECP 216 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH-------H---HHTTCCSE-EEETTTSCHHHHHHHHCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-------H---HHHcCCCE-EEECCCHHHHHHHHHhcC
Confidence 567999999999999999999999995 99999987641100 0 01112222 23555533322222
Q ss_pred hCCCEEEEccc
Q 012270 83 EGASTVFYVDA 93 (467)
Q Consensus 83 ~~~D~Vih~aa 93 (467)
.++|+||++++
T Consensus 217 ~~~d~vi~~~g 227 (336)
T 4b7c_A 217 KGIDVFFDNVG 227 (336)
T ss_dssp TCEEEEEESSC
T ss_pred CCceEEEECCC
Confidence 25999999987
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.027 Score=55.19 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=52.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
|++|+|+|+ |.+|+.+++.+.+.|+ +|++++..+... . .. . .-..+..|..|.+.+.++++++|+
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~-~v~~~~~~~~~~---~------~~-~---~~~~~~~~~~d~~~l~~~~~~~d~ 65 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGF-YVIVLDPTPRSP---A------GQ-V---ADEQIVAGFFDSERIEDLVKGSDV 65 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSTTCT---T------GG-G---SSEEEECCTTCHHHHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCCCCc---h------hh-h---CceEEECCCCCHHHHHHHHhcCCE
Confidence 478999997 8999999999999995 899888754310 0 00 1 113567899999999988889999
Q ss_pred EEE
Q 012270 88 VFY 90 (467)
Q Consensus 88 Vih 90 (467)
|+-
T Consensus 66 v~~ 68 (380)
T 3ax6_A 66 TTY 68 (380)
T ss_dssp EEE
T ss_pred EEe
Confidence 884
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0038 Score=61.03 Aligned_cols=98 Identities=15% Similarity=0.028 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHH-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~- 82 (467)
.+.+|+|+||+|-+|...++.+...|. +|+++++++.... . ..+ -+...+ .|..+.+ .+.+..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~----~---~~~----~Ga~~~-~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSA----F---LKS----LGCDRP-INYKTEPVGTVLKQEYP 229 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHH----H---HHH----TTCSEE-EETTTSCHHHHHHHHCT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHH----H---HHH----cCCcEE-EecCChhHHHHHHHhcC
Confidence 467999999999999999999999995 9999998754110 0 000 122221 2443322 222222
Q ss_pred hCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcc
Q 012270 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (467)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~ 134 (467)
.++|+||++++. ......+++++..| +++.+++..
T Consensus 230 ~g~D~vid~~g~---------------~~~~~~~~~l~~~G--~iv~~g~~~ 264 (362)
T 2c0c_A 230 EGVDVVYESVGG---------------AMFDLAVDALATKG--RLIVIGFIS 264 (362)
T ss_dssp TCEEEEEECSCT---------------HHHHHHHHHEEEEE--EEEECCCGG
T ss_pred CCCCEEEECCCH---------------HHHHHHHHHHhcCC--EEEEEeCCC
Confidence 258999999872 12234555655555 788887754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0028 Score=61.81 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~ 83 (467)
.+.+|+|+||+|-||..+++.+...| .+|+++++++..... ..+ .+.. ...|..+.+ ++.+...
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~-------~~~----~g~~-~~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQKKLQM-------AEK----LGAA-AGFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH----HTCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHH----cCCc-EEEecCChHHHHHHHHHhc
Confidence 46799999999999999999999999 499999987641100 000 1122 224655533 3333332
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+||++++
T Consensus 229 ~~~~d~vi~~~G 240 (354)
T 2j8z_A 229 GAGVNLILDCIG 240 (354)
T ss_dssp TSCEEEEEESSC
T ss_pred CCCceEEEECCC
Confidence 5899999998
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0053 Score=59.38 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~ 83 (467)
.+.+|+|+||+|-+|...++.+...|. +|+++++++.... . ..+ .+... ..|..+.+ .+.+...
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~----~---~~~----lga~~-~~~~~~~~~~~~~~~~~~ 210 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTE----E---LLR----LGAAY-VIDTSTAPLYETVMELTN 210 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHH----H---HHH----HTCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH----H---HHh----CCCcE-EEeCCcccHHHHHHHHhC
Confidence 467999999999999999999999995 9999998765110 0 001 12222 23444432 2333332
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+||++++
T Consensus 211 ~~g~Dvvid~~g 222 (340)
T 3gms_A 211 GIGADAAIDSIG 222 (340)
T ss_dssp TSCEEEEEESSC
T ss_pred CCCCcEEEECCC
Confidence 5899999987
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.014 Score=58.26 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++++|+|+|+ |.+|+.+++.+.+.| ++|++++..+.. +..+ . .-+.+.+|..|.+.+.++++++|
T Consensus 34 ~~~~IlIlG~-G~lg~~~~~aa~~lG-~~v~v~d~~~~~---p~~~-------~---ad~~~~~~~~d~~~l~~~a~~~D 98 (419)
T 4e4t_A 34 PGAWLGMVGG-GQLGRMFCFAAQSMG-YRVAVLDPDPAS---PAGA-------V---ADRHLRAAYDDEAALAELAGLCE 98 (419)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCTTC---HHHH-------H---SSEEECCCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCcC---chhh-------h---CCEEEECCcCCHHHHHHHHhcCC
Confidence 4579999987 899999999999999 589999865431 0000 0 12456689999999999999999
Q ss_pred EEE
Q 012270 87 TVF 89 (467)
Q Consensus 87 ~Vi 89 (467)
+|+
T Consensus 99 ~V~ 101 (419)
T 4e4t_A 99 AVS 101 (419)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0082 Score=57.49 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC-CCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|+|.|+|+ |.+|+.++..|.+.|+.+|+++|+++......... ...........++.. ..|+ ++++++
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~a~~~a 73 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY-------ADISGS 73 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH-------HHhCCC
Confidence 3579999998 99999999999999943899999976421100000 000000000112221 1222 356789
Q ss_pred CEEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||-+++.+.. ..........|....+.+++.+.+.... .++.+|.
T Consensus 74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999999974331 1122333455666677777777665322 3444444
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.012 Score=57.06 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=59.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH---HHHHHHH--h
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVL--E 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~--~ 83 (467)
++++|+||+|-+|...++.+...|. +|+++++++.+.. . .. ..+... ..|..+. +.+.+.. .
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~----~---~~----~~Ga~~-~~~~~~~~~~~~v~~~~~~~ 232 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIA----L---LK----DIGAAH-VLNEKAPDFEATLREVMKAE 232 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHH----H---HH----HHTCSE-EEETTSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH----H---HH----HcCCCE-EEECCcHHHHHHHHHHhcCC
Confidence 6899999999999999999999994 9999998665210 0 00 112222 2344442 2333333 3
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
++|+||++++.. .....++.++..| +++.+++.
T Consensus 233 g~D~vid~~g~~---------------~~~~~~~~l~~~G--~iv~~G~~ 265 (349)
T 3pi7_A 233 QPRIFLDAVTGP---------------LASAIFNAMPKRA--RWIIYGRL 265 (349)
T ss_dssp CCCEEEESSCHH---------------HHHHHHHHSCTTC--EEEECCCS
T ss_pred CCcEEEECCCCh---------------hHHHHHhhhcCCC--EEEEEecc
Confidence 699999998721 1133455555444 78877654
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.017 Score=55.35 Aligned_cols=115 Identities=12% Similarity=-0.034 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEE-EecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYH-QVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~Dl~d~~~l~~~~~ 83 (467)
..++|.|+|+ |.+|+.++..|+..|. .+|+++|+........... +.+.. ........ ..|..+ ++
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~D---L~~~~~~~~~~~i~~t~d~~~-------~~ 88 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMD---LEHGSLFLHTAKIVSGKDYSV-------SA 88 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHH---HHHHGGGSCCSEEEEESSSCS-------CS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHH---hhhhhhcccCCeEEEcCCHHH-------hC
Confidence 4689999999 9999999999999984 2899999865321000000 00000 01112222 335422 67
Q ss_pred CCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
++|+||-+||.+. ...+.......|..-.+.+.+.+.+.+.. .++.+|.
T Consensus 89 daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 89 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp SCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 8999999999543 22334566788888889999988887543 4554443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0031 Score=61.64 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++++|+|+ |-+|+.+++.+...|. +|++++|++.+.. . +.+.. ...+ ..+..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~----~---~~~~~-~~~~---~~~~~~~~~~~~~~~~~D 232 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLS----Y---LETLF-GSRV---ELLYSNSAEIETAVAEAD 232 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHH----H---HHHHH-GGGS---EEEECCHHHHHHHHHTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHH----H---HHHhh-Ccee---EeeeCCHHHHHHHHcCCC
Confidence 3579999999 9999999999999995 9999999764110 0 00000 0011 122235566777888999
Q ss_pred EEEEcccCC
Q 012270 87 TVFYVDATD 95 (467)
Q Consensus 87 ~Vih~aa~~ 95 (467)
+||++++..
T Consensus 233 vVI~~~~~~ 241 (361)
T 1pjc_A 233 LLIGAVLVP 241 (361)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCcC
Confidence 999998754
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=55.65 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+||+|.|+|+||.+|+.++..|.+.|+ +|++++|++.
T Consensus 9 ~mmm~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~ 46 (286)
T 3c24_A 9 VGPKTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPE 46 (286)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 3568999999999999999999999995 9999999764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0043 Score=62.31 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=30.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|+| +|++|..++..|.+.|+ +|+++||++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-EVIGVDVSST 34 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-EEEEEECCHH
Confidence 5899998 59999999999999995 9999999764
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0041 Score=60.61 Aligned_cols=73 Identities=18% Similarity=0.112 Sum_probs=48.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHH---HHHHHh-
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ---IKKVLE- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~- 83 (467)
++|+|+||+|-||..+++.+...| . +|+++++++..... ..+ .-+.. ...|..+.+. +.+...
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~G-a~~Vi~~~~~~~~~~~-------~~~---~~g~~-~~~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLG-CSRVVGICGTHEKCIL-------LTS---ELGFD-AAINYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTT-CSEEEEEESCHHHHHH-------HHH---TSCCS-EEEETTTSCHHHHHHHHCTT
T ss_pred cEEEEECCCcHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHH-------HHH---HcCCc-eEEecCchHHHHHHHHhcCC
Confidence 799999999999999999999999 6 89999987531100 000 01222 2346655332 222222
Q ss_pred CCCEEEEccc
Q 012270 84 GASTVFYVDA 93 (467)
Q Consensus 84 ~~D~Vih~aa 93 (467)
++|+||++++
T Consensus 230 ~~d~vi~~~G 239 (357)
T 2zb4_A 230 GVDVYFDNVG 239 (357)
T ss_dssp CEEEEEESCC
T ss_pred CCCEEEECCC
Confidence 5899999997
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0055 Score=61.68 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=31.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+|+|.|+|+ |++|..++..|.+.|+ +|+++||++.
T Consensus 2 ~mkI~VIG~-G~vG~~lA~~La~~G~-~V~~~D~~~~ 36 (450)
T 3gg2_A 2 SLDIAVVGI-GYVGLVSATCFAELGA-NVRCIDTDRN 36 (450)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhcCC-EEEEEECCHH
Confidence 379999976 9999999999999995 9999999875
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.04 Score=53.57 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=49.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecC-CCHHHHHHHHhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-RDISQIKKVLEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-~d~~~l~~~~~~~D 86 (467)
||+|+|+|| |..|..++..+.+.| ++|+++|.++... . ... --+.+..|. .|.+.+....+++|
T Consensus 1 MK~I~ilGg-g~~g~~~~~~Ak~~G-~~vv~vd~~~~~~---~-------~~~---aD~~~~~~~~~d~~~~~~~~~~~D 65 (363)
T 4ffl_A 1 MKTICLVGG-KLQGFEAAYLSKKAG-MKVVLVDKNPQAL---I-------RNY---ADEFYCFDVIKEPEKLLELSKRVD 65 (363)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCTTCT---T-------TTT---SSEEEECCTTTCHHHHHHHHTSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCCCh---h-------Hhh---CCEEEECCCCcCHHHHHHHhcCCC
Confidence 689999986 899999999999999 5999998766410 0 000 113455564 56777777788999
Q ss_pred EEEEc
Q 012270 87 TVFYV 91 (467)
Q Consensus 87 ~Vih~ 91 (467)
+|+-.
T Consensus 66 ~v~~~ 70 (363)
T 4ffl_A 66 AVLPV 70 (363)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98743
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0068 Score=57.55 Aligned_cols=73 Identities=18% Similarity=0.091 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+.+|+|+||+|-+|...++.+...|. +|+++++++.... . ....+... ..|..+.+.+.+.++++|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~--------~---~~~~ga~~-~~~~~~~~~~~~~~~~~d 191 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLA--------L---PLALGAEE-AATYAEVPERAKAWGGLD 191 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSH--------H---HHHTTCSE-EEEGGGHHHHHHHTTSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH--------H---HHhcCCCE-EEECCcchhHHHHhcCce
Confidence 467999999999999999999999995 9999998664110 0 00112222 246655123444457899
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+||+ ++
T Consensus 192 ~vid-~g 197 (302)
T 1iz0_A 192 LVLE-VR 197 (302)
T ss_dssp EEEE-CS
T ss_pred EEEE-CC
Confidence 9999 76
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0033 Score=58.85 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|+|+ |-+|+.++..|.+.| .+|++.+|+..
T Consensus 118 ~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R~~~ 153 (271)
T 1nyt_A 118 PGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRTVS 153 (271)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEECCHH
Confidence 5689999998 789999999999999 59999999864
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0024 Score=60.91 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+||+|.|+|+ |.+|+.++..|.+.|+ +|++++|++.
T Consensus 2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~-~V~~~~r~~~ 37 (316)
T 2ew2_A 2 NAMKIAIAGA-GAMGSRLGIMLHQGGN-DVTLIDQWPA 37 (316)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCC-cEEEEECCHH
Confidence 4689999986 9999999999999995 9999999764
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.01 Score=57.16 Aligned_cols=116 Identities=9% Similarity=0.037 Sum_probs=67.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcC-CCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+|+|.|+|| |.+|..++..|...|+.+|+++|+++......... ...........++.. ..|+ ++++++|
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~al~~aD 84 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENNY-------EYLQNSD 84 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCCH-------HHHCCCC
Confidence 469999998 99999999999999953799999976421100000 000000001122222 1232 3577899
Q ss_pred EEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 87 TVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+||-+++.+... .........|..-.+.+.+.+.+...+ .++.+|.
T Consensus 85 ~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 85 VVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp EEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999998743311 112234566777777888877765433 3444443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0053 Score=58.60 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=71.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|||.|+|+ |.+|..++..|+..+. .+++++|+...+....... +.+.. ...++.... | + .++++++|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~d---l~~~~~~~~~~~v~~-~--~----~~a~~~aD 69 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAED---ILHATPFAHPVWVWA-G--S----YGDLEGAR 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH---HHTTGGGSCCCEEEE-C--C----GGGGTTEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHH---HHHhHhhcCCeEEEE-C--C----HHHhCCCC
Confidence 68999998 9999999999988763 2899999875321100000 11100 012334332 2 3 33478999
Q ss_pred EEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 87 TVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+||..++.+.. ...-......|+...+.+.+.+++.+.+ .++.+|-
T Consensus 70 ~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 70 AVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999985432 2233456788888888999988887533 4554443
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=56.03 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=63.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
||+|.|+| +|.+|..++..|.+.|. ++|+++||++......... +.+. .....+..... |. +++++
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~---d~----~~~~~ 69 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID---FQDAMANLEAHGNIVIN---DW----AALAD 69 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHHHGGGSSSCCEEEES---CG----GGGTT
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHH---HHhhhhhcCCCeEEEeC---CH----HHhCC
Confidence 47999999 69999999999999982 3899999976421100000 0000 01112333222 32 34678
Q ss_pred CCEEEEcccCCC-----CCCChhhHHHhhHHHHHHHHHHHHhCCCC
Q 012270 85 ASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (467)
Q Consensus 85 ~D~Vih~aa~~~-----~~~~~~~~~~~nv~g~~~ll~aa~~~~v~ 125 (467)
+|+||-++.... ...........|..-...+++.+.+...+
T Consensus 70 aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~ 115 (309)
T 1hyh_A 70 ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115 (309)
T ss_dssp CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999998887432 11122234566777778888888776433
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0049 Score=59.74 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~ 83 (467)
.++++||+||+|-+|..+++.+...|. +|+++++++.... . ... .+... ..|..+.+ ++.+...
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~----~---~~~----~ga~~-~~d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLR----R---AKA----LGADE-TVNYTHPDWPKEVRRLTG 232 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHH----H---HHH----HTCSE-EEETTSTTHHHHHHHHTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH----H---HHh----cCCCE-EEcCCcccHHHHHHHHhC
Confidence 467999999999999999999999994 9999998754110 0 000 12222 24665533 3333332
Q ss_pred --CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
++|+||++++ .. .....++.++..| +++.+++.
T Consensus 233 ~~~~d~vi~~~g-~~--------------~~~~~~~~l~~~G--~~v~~g~~ 267 (343)
T 2eih_A 233 GKGADKVVDHTG-AL--------------YFEGVIKATANGG--RIAIAGAS 267 (343)
T ss_dssp TTCEEEEEESSC-SS--------------SHHHHHHHEEEEE--EEEESSCC
T ss_pred CCCceEEEECCC-HH--------------HHHHHHHhhccCC--EEEEEecC
Confidence 5899999998 21 1234455555545 78877664
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.016 Score=54.13 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++++|+|+ |-+|+.++..|.+.|..+|++++|+..+... +. .++.. ...+++.+++.++|
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~-------la-----~~~~~-----~~~~~~~~~~~~aD 177 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN-------WS-----LNINK-----INLSHAESHLDEFD 177 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT-------CC-----SCCEE-----ECHHHHHHTGGGCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-------HH-----Hhccc-----ccHhhHHHHhcCCC
Confidence 4679999997 8999999999999994489999998752111 11 11222 13455667778899
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+||++..
T Consensus 178 iVInaTp 184 (277)
T 3don_A 178 IIINTTP 184 (277)
T ss_dssp EEEECCC
T ss_pred EEEECcc
Confidence 9998865
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.01 Score=54.42 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
+||||.|+|+ |.+|+.+++.+.++++ +++. ++|.........-. ..+.... +... ..|++.++...+.++
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~~~~gv~v~-~dl~~l~---~~DV-vIDft~p~a~~~~~~l~ 74 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPKATTPYQQY-QHIADVK---GADV-AIDFSNPNLLFPLLDED 74 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC--CCSCBC-SCTTTCT---TCSE-EEECSCHHHHHHHHTSC
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCccccCCCcee-CCHHHHh---CCCE-EEEeCChHHHHHHHHHh
Confidence 3689999999 9999999999999986 7665 67765321100000 0011111 2232 358888877665543
Q ss_pred -CCCEEEEcc
Q 012270 84 -GASTVFYVD 92 (467)
Q Consensus 84 -~~D~Vih~a 92 (467)
+.++|+...
T Consensus 75 ~g~~vVigTT 84 (243)
T 3qy9_A 75 FHLPLVVATT 84 (243)
T ss_dssp CCCCEEECCC
T ss_pred cCCceEeCCC
Confidence 456776443
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.054 Score=51.47 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+++++|+|+ |-.|+.++..|.+.|..+|++++|+..... ..++ +.+.. ...+......+..+.+.+.+.+.++
T Consensus 147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~-~a~~---la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~ 221 (312)
T 3t4e_A 147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFE-KAVA---FAKRVNENTDCVVTVTDLADQHAFTEALASA 221 (312)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHH-HHHH---HHHHHHHHSSCEEEEEETTCHHHHHHHHHHC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHH-HHHH---HHHHhhhccCcceEEechHhhhhhHhhccCc
Confidence 5789999997 899999999999999548999999832100 0000 00000 0012333445666654455667778
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+||++..
T Consensus 222 DiIINaTp 229 (312)
T 3t4e_A 222 DILTNGTK 229 (312)
T ss_dssp SEEEECSS
T ss_pred eEEEECCc
Confidence 88887765
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.012 Score=56.18 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..||+|.|+|. |.+|..++..|.+.|+ +|++.+|++.... .....++.. . ++..++++++
T Consensus 19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~-----------~l~~~g~~~----~---~~~~~~~~~a 78 (310)
T 3doj_A 19 SHMMEVGFLGL-GIMGKAMSMNLLKNGF-KVTVWNRTLSKCD-----------ELVEHGASV----C---ESPAEVIKKC 78 (310)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSGGGGH-----------HHHHTTCEE----C---SSHHHHHHHC
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHCCC-eEEEEeCCHHHHH-----------HHHHCCCeE----c---CCHHHHHHhC
Confidence 45789999975 9999999999999995 9999999875211 011112221 1 2345667789
Q ss_pred CEEEEcc
Q 012270 86 STVFYVD 92 (467)
Q Consensus 86 D~Vih~a 92 (467)
|+||-+.
T Consensus 79 Dvvi~~v 85 (310)
T 3doj_A 79 KYTIAML 85 (310)
T ss_dssp SEEEECC
T ss_pred CEEEEEc
Confidence 9999665
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.036 Score=52.89 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=67.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccC--CCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQL--DPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
.++|+|.|+|+ |.+|..++..|.+.|+. +|++++|++.... ......+ . ... ........ .+. +++
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~-~-~~~--~~~~v~~~--~~~----~~~ 73 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG-S-SFY--PTVSIDGS--DDP----EIC 73 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT-G-GGS--TTCEEEEE--SCG----GGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhh-h-hhc--CCeEEEeC--CCH----HHh
Confidence 45689999998 99999999999999932 8999999763210 0000000 0 000 12222222 122 245
Q ss_pred hCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 83 EGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 83 ~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
+++|+||-+++... ...+.......|......+++..++.+.+.+|.
T Consensus 74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi 121 (319)
T 1lld_A 74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121 (319)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 68999999887432 223344566778887788888777654333443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0097 Score=60.48 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~ 44 (467)
.++|+|.|+|. |++|..++..|.+. | ++|+++||++.
T Consensus 7 ~~~mkI~VIG~-G~vG~~~A~~La~~g~g-~~V~~~D~~~~ 45 (481)
T 2o3j_A 7 GKVSKVVCVGA-GYVGGPTCAMIAHKCPH-ITVTVVDMNTA 45 (481)
T ss_dssp CCCCEEEEECC-STTHHHHHHHHHHHCTT-SEEEEECSCHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCC-CEEEEEECCHH
Confidence 45689999975 99999999999999 6 59999999765
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.14 Score=48.27 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCc
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL 45 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~ 45 (467)
|.+||-++| .|..|..+++.|++.| ++|+++||++.+
T Consensus 4 Ms~kIgfIG-LG~MG~~mA~~L~~~G-~~V~v~dr~~~~ 40 (297)
T 4gbj_A 4 MSEKIAFLG-LGNLGTPIAEILLEAG-YELVVWNRTASK 40 (297)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEC------
T ss_pred CCCcEEEEe-cHHHHHHHHHHHHHCC-CeEEEEeCCHHH
Confidence 446899996 5999999999999999 599999998864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.019 Score=54.45 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++++|+|+ |-+|+.++..|.+.|..+|++++|+..+... +.+.... ... +..+.+++.+.+.++|
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~-------la~~~~~-~~~----~~~~~~~~~~~~~~aD 206 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAER-------LVREGDE-RRS----AYFSLAEAETRLAEYD 206 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHH-------HHHHSCS-SSC----CEECHHHHHHTGGGCS
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-------HHHHhhh-ccC----ceeeHHHHHhhhccCC
Confidence 5689999998 7899999999999994489999998642110 1100100 000 1123355677788899
Q ss_pred EEEEcccCC
Q 012270 87 TVFYVDATD 95 (467)
Q Consensus 87 ~Vih~aa~~ 95 (467)
+||++.+..
T Consensus 207 ivIn~t~~~ 215 (297)
T 2egg_A 207 IIINTTSVG 215 (297)
T ss_dssp EEEECSCTT
T ss_pred EEEECCCCC
Confidence 999998743
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.066 Score=52.55 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+|+|+|+ |.+|+.+++.+.+.|+ +|.+++..+.. .... . --+.+..|..|.+.+.++++
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~-~v~~~~~~~~~---~~~~-------~---~d~~~~~~~~d~~~l~~~~~~~ 73 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGV-EVIAVDRYADA---PAMH-------V---AHRSHVINMLDGDALRRVVELE 73 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTC-EEEEEESSTTC---GGGG-------G---SSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEECCCCC---chhh-------h---ccceEECCCCCHHHHHHHHHHc
Confidence 35689999987 8999999999999995 99999876531 0000 0 12456678899998888775
Q ss_pred CCCEEEE
Q 012270 84 GASTVFY 90 (467)
Q Consensus 84 ~~D~Vih 90 (467)
++|+|+.
T Consensus 74 ~~d~v~~ 80 (391)
T 1kjq_A 74 KPHYIVP 80 (391)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 7999985
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0056 Score=59.57 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHH-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~- 82 (467)
.+.+|+|+||+|-+|...++.+...|. +|+++++++.+... ..+ .+... ..|..+.+ .+.+..
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~-------~~~----lGa~~-~~~~~~~~~~~~~~~~~~ 233 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEA-------CER----LGAKR-GINYRSEDFAAVIKAETG 233 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH-------HHH----HTCSE-EEETTTSCHHHHHHHHHS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH-------HHh----cCCCE-EEeCCchHHHHHHHHHhC
Confidence 467999999999999999999999994 99999987642100 000 11222 23444432 233322
Q ss_pred hCCCEEEEccc
Q 012270 83 EGASTVFYVDA 93 (467)
Q Consensus 83 ~~~D~Vih~aa 93 (467)
.++|+||++++
T Consensus 234 ~g~Dvvid~~g 244 (353)
T 4dup_A 234 QGVDIILDMIG 244 (353)
T ss_dssp SCEEEEEESCC
T ss_pred CCceEEEECCC
Confidence 25999999987
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.066 Score=52.07 Aligned_cols=121 Identities=12% Similarity=-0.036 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-E---EEEEcCCCCcc--CCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-I---VRVTDSTQSLQ--LDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~---V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
.++||.|+||+|.||++++-.|+..+.. + +.+.+...... ....+. -.+.+.. .+-...+.. .+ .-.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~a-mDL~h~~-~p~~~~v~i--~~--~~y~ 104 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA-MELEDSL-YPLLREVSI--GI--DPYE 104 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH-HHHHTTT-CTTEEEEEE--ES--CHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHH-HhHHhhh-hhhcCCcEE--ec--CCHH
Confidence 4578999999999999999999887642 2 55543322110 000000 0011111 011111111 11 1256
Q ss_pred HHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhC-CC-CeEEEEcCc
Q 012270 81 VLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACREC-KV-RRLVYNSTA 133 (467)
Q Consensus 81 ~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~-~v-~r~v~~SS~ 133 (467)
.++++|+||-.||.+. ...+.....+.|..-.+.+.+++.+. +. ..++.+|..
T Consensus 105 ~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 105 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 7889999999998543 33445678899999999999988874 32 356666653
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.045 Score=50.93 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|+|+++.+|+.++..|+++| .+|++.+|... .+.+.++.+
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~g-AtVtv~h~~t~--------------------------------~L~~~~~~A 204 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAG-ATVSVCHIKTK--------------------------------DLSLYTRQA 204 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------CHHHHHTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCch--------------------------------hHHHHhhcC
Confidence 467999999999999999999999999 48998876321 356778899
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+||...+.
T Consensus 205 DIVI~Avg~ 213 (285)
T 3p2o_A 205 DLIIVAAGC 213 (285)
T ss_dssp SEEEECSSC
T ss_pred CEEEECCCC
Confidence 999988873
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.067 Score=55.44 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=65.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
++++|.|+ |-+|+++++.|.+.|+ +|+++++++... .+ . ...+.||-+|++.++++ ++++|+
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~-~v~vid~d~~~~----------~~-~----~~~i~gD~t~~~~L~~agi~~ad~ 411 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPV-PFILIDRQESPV----------CN-D----HVVVYGDATVGQTLRQAGIDRASG 411 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-CEEEEESSCCSS----------CC-S----SCEEESCSSSSTHHHHHTTTSCSE
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCC-CEEEEECChHHH----------hh-c----CCEEEeCCCCHHHHHhcCccccCE
Confidence 78999988 9999999999999995 999999887621 11 1 17899999999999877 567999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEE
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v 128 (467)
||-+.+. + +.|+. +...|++.+.+ ++|
T Consensus 412 vi~~~~~-----d-----~~ni~----~~~~ak~l~~~~~ii 439 (565)
T 4gx0_A 412 IIVTTND-----D-----STNIF----LTLACRHLHSHIRIV 439 (565)
T ss_dssp EEECCSC-----H-----HHHHH----HHHHHHHHCSSSEEE
T ss_pred EEEECCC-----c-----hHHHH----HHHHHHHHCCCCEEE
Confidence 9854431 1 44544 34456666654 444
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0015 Score=54.72 Aligned_cols=71 Identities=8% Similarity=0.155 Sum_probs=48.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
.++|+|+|+ |.+|+.+++.|.+.|. +|++.+|++..... +.... +.... +.. ++.++++++|+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~-------~a~~~---~~~~~--~~~---~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-KVTVAGRNIDHVRA-------FAEKY---EYEYV--LIN---DIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-EEEEEESCHHHHHH-------HHHHH---TCEEE--ECS---CHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCHHHHHH-------HHHHh---CCceE--eec---CHHHHhcCCCE
Confidence 679999996 9999999999999995 79999997652110 00001 12221 222 34566788999
Q ss_pred EEEcccCC
Q 012270 88 VFYVDATD 95 (467)
Q Consensus 88 Vih~aa~~ 95 (467)
||.+.+..
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99887643
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.072 Score=50.45 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+++|.|+|| |.+|..++..|+..|.. +|+++|+.+. ....... +.+ ...+++.. ..|+ ++++++
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~d---l~~-~~~~~i~~-t~d~-------~~l~~a 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMD---LEI-FNLPNVEI-SKDL-------SASAHS 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHH---HHH-HTCTTEEE-ESCG-------GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHH---Hhh-hcCCCeEE-eCCH-------HHHCCC
Confidence 4679999996 99999999999999831 8999999763 1111111 111 11234444 2332 347899
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
|+||-.++.......-......|..-.+.+++.+.+.... .++.+|-
T Consensus 79 D~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 79 KVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp SEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 9999999853222233455677888888888888876433 3444443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.066 Score=50.87 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
...+++++|.|++..+|+.+++.|++.| .+|++.+|+........+. ..............+++.+.+.+..
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~g-AtVtv~nR~~~~l~~ra~~-------la~~~~~~t~~~~t~~~~L~e~l~~ 245 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGES-------LKLNKHHVEDLGEYSEDLLKKCSLD 245 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCC-------SSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCC-CEEEEEeCchHHHHhHHHH-------HhhhcccccccccccHhHHHHHhcc
Confidence 3467899999998899999999999999 5999999874322111111 1111111111111345778999999
Q ss_pred CCEEEEcccC
Q 012270 85 ASTVFYVDAT 94 (467)
Q Consensus 85 ~D~Vih~aa~ 94 (467)
+|+||-+.+.
T Consensus 246 ADIVIsAtg~ 255 (320)
T 1edz_A 246 SDVVITGVPS 255 (320)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999987774
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.24 Score=47.81 Aligned_cols=112 Identities=10% Similarity=0.057 Sum_probs=69.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----CCCCCc--------C--CCCC--eEEEEec
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLPDS--------L--SSGR--AEYHQVD 71 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----~~~~~~--------~--~~~~--v~~~~~D 71 (467)
..+|+|.|+ |-+|+++++.|...|.-.++++|.+.-...+..++- ...... + ..+. ++.+..+
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 114 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED 114 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence 468999987 889999999999999669999987653222221110 000000 0 0233 3444444
Q ss_pred CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
+.+ ...+.++++|+||.+.. |...-..+-++|.+.++ .+|..++...+|
T Consensus 115 ~~~--~~~~~~~~~dvVv~~~d--------------~~~~r~~ln~~~~~~~i-p~i~~~~~G~~G 163 (346)
T 1y8q_A 115 IEK--KPESFFTQFDAVCLTCC--------------SRDVIVKVDQICHKNSI-KFFTGDVFGYHG 163 (346)
T ss_dssp GGG--CCHHHHTTCSEEEEESC--------------CHHHHHHHHHHHHHTTC-EEEEEEEEBTEE
T ss_pred cCc--chHHHhcCCCEEEEcCC--------------CHHHHHHHHHHHHHcCC-CEEEEeecccEE
Confidence 433 23566788999996542 12233457778888886 688887776664
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.053 Score=51.36 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
.|++|-++| .|..|+.+++.|++.| ++|++.||++.+.....+......... .-...+.+..=+.|.+++++++.+
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G-~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~ 79 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLD 79 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCC-CeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhc
Confidence 467999997 5999999999999999 499999998753211100000000000 012345566666777777776643
Q ss_pred C----------CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 85 A----------STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 85 ~----------D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
. ++||.+... ....++.+.+.+++.|+ +|+
T Consensus 80 ~~g~~~~~~~g~iiId~sT~-------------~p~~~~~~a~~~~~~G~-~~l 119 (300)
T 3obb_A 80 DDGLLAHIAPGTLVLECSTI-------------APTSARKIHAAARERGL-AML 119 (300)
T ss_dssp SSSSTTSCCC-CEEEECSCC-------------CHHHHHHHHHHHHTTTC-EEE
T ss_pred hhhhhhcCCCCCEEEECCCC-------------CHHHHHHHHHHHHHcCC-EEE
Confidence 2 455555432 23445677788888776 444
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.025 Score=54.18 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=67.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcC-CCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|+|+ |.+|..++..|.+.| + +|+++|+++......... .... ... ....... .|. ++++++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g-~~~~V~l~D~~~~~~~~~~~~l~~~~-~~~--~~~~i~~---~d~----~~~~~a 68 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKRAEGDALDLIHGT-PFT--RRANIYA---GDY----ADLKGS 68 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHHHHHHHHHHHHG-GGS--CCCEEEE---CCG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEeCChHHHHHHHHHHHhhh-hhc--CCcEEEe---CCH----HHhCCC
Confidence 58999998 999999999999999 5 899999976421100000 0000 000 1222222 232 246789
Q ss_pred CEEEEcccCCCCC-CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEc
Q 012270 86 STVFYVDATDLNT-DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (467)
Q Consensus 86 D~Vih~aa~~~~~-~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~S 131 (467)
|+||-+++..... .........|......+++.+.+.... .+|.+|
T Consensus 69 DvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 69 DVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999988754322 123445667777888888888775433 344443
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.068 Score=50.10 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHH--HHHh
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK--KVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~--~~~~ 83 (467)
..+++++|.|++|.+|+.++..|++.| .+|++.+|... .+. +.++
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~~~~T~--------------------------------~l~l~~~~~ 209 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKEN-ATVTIVHSGTS--------------------------------TEDMIDYLR 209 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTSC--------------------------------HHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCCC--------------------------------Cchhhhhhc
Confidence 467899999999999999999999999 49999876321 233 7788
Q ss_pred CCCEEEEcccC
Q 012270 84 GASTVFYVDAT 94 (467)
Q Consensus 84 ~~D~Vih~aa~ 94 (467)
.+|+||...+.
T Consensus 210 ~ADIVI~Avg~ 220 (300)
T 4a26_A 210 TADIVIAAMGQ 220 (300)
T ss_dssp TCSEEEECSCC
T ss_pred cCCEEEECCCC
Confidence 99999988874
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.26 Score=47.16 Aligned_cols=108 Identities=10% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CCCCc--------C--CCCCeEEEEe--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDS--------L--SSGRAEYHQV-- 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~--------~--~~~~v~~~~~-- 70 (467)
...+|+|.|+ |-+|+++++.|...|.-+++++|++.-...+..++-- ..... + ..|.++....
T Consensus 33 ~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~ 111 (340)
T 3rui_A 33 KNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL 111 (340)
T ss_dssp HTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred hCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence 3578999987 9999999999999996699999987643222222200 00000 0 0244554433
Q ss_pred cC--------------CCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 71 DV--------------RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 71 Dl--------------~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
++ .+.+.+.+.++++|+||.+.- +++.- ..+-++|.+.++ .+|..
T Consensus 112 ~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD------n~~tR--------~lin~~c~~~~~-plI~a 170 (340)
T 3rui_A 112 SIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD------SRESR--------WLPSLLSNIENK-TVINA 170 (340)
T ss_dssp CCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS------STGGG--------HHHHHHHHHTTC-EEEEE
T ss_pred cccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC------CHHHH--------HHHHHHHHHcCC-cEEEe
Confidence 32 134456778889999997753 22211 235568888876 46553
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.11 Score=49.18 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
++|+|.|+|. |.+|+.++..|.+.|+ +|++.+|++.
T Consensus 6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~-~V~~~dr~~~ 41 (303)
T 3g0o_A 6 TDFHVGIVGL-GSMGMGAARSCLRAGL-STWGADLNPQ 41 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC-eEEEEECCHH
Confidence 5679999975 9999999999999995 9999999874
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0072 Score=58.03 Aligned_cols=74 Identities=14% Similarity=-0.008 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~ 83 (467)
.+.+|+|+||+|-+|...++.+...|. +|+++++++.+.. . ..+ .+... ..|..+.+ .+.+...
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~-~------~~~----~Ga~~-~~~~~~~~~~~~~~~~~~ 206 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAA-H------AKA----LGAWE-TIDYSHEDVAKRVLELTD 206 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHH-H------HHH----HTCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH-H------HHH----cCCCE-EEeCCCccHHHHHHHHhC
Confidence 467999999999999999999999994 9999998764110 0 000 11221 23444433 3333333
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+||++++
T Consensus 207 ~~g~Dvvid~~g 218 (325)
T 3jyn_A 207 GKKCPVVYDGVG 218 (325)
T ss_dssp TCCEEEEEESSC
T ss_pred CCCceEEEECCC
Confidence 5899999987
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.056 Score=45.12 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=53.1
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGat---GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
+++|.|.|++ |.+|..+++.|++.| ++|+.++.... + . .++.. ..++. ++.+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vnp~~~------~--------i--~G~~~-y~sl~------~l~~~ 77 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKYE------E--------V--LGRKC-YPSVL------DIPDK 77 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCS------E--------E--TTEEC-BSSGG------GCSSC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEECCCCC------e--------E--CCeec-cCCHH------HcCCC
Confidence 5789999998 899999999999999 57766644321 0 0 12221 11222 22236
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
+|.++-+.. ......+++.|.+.|++.+++.
T Consensus 78 vDlvvi~vp---------------~~~~~~vv~~~~~~gi~~i~~~ 108 (144)
T 2d59_A 78 IEVVDLFVK---------------PKLTMEYVEQAIKKGAKVVWFQ 108 (144)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEEeC---------------HHHHHHHHHHHHHcCCCEEEEC
Confidence 888875432 2334567778888899876644
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.022 Score=55.57 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+.+|+|+|+ |-+|...++.+...| .+|+++++++.... .....-+... ..|..+.+.+.++..++|
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~----------~~~~~lGa~~-v~~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFG-SKVTVISTSPSKKE----------EALKNFGADS-FLVSRDQEQMQAAAGTLD 253 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCGGGHH----------HHHHTSCCSE-EEETTCHHHHHHTTTCEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHH----------HHHHhcCCce-EEeccCHHHHHHhhCCCC
Confidence 4679999996 999999999999999 48999998764210 0000112222 247777777776667899
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+||++++.... ....++.++..| +++.+++.
T Consensus 254 ~vid~~g~~~~--------------~~~~~~~l~~~G--~iv~~g~~ 284 (366)
T 1yqd_A 254 GIIDTVSAVHP--------------LLPLFGLLKSHG--KLILVGAP 284 (366)
T ss_dssp EEEECCSSCCC--------------SHHHHHHEEEEE--EEEECCCC
T ss_pred EEEECCCcHHH--------------HHHHHHHHhcCC--EEEEEccC
Confidence 99999884321 113344554444 78877763
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.036 Score=53.83 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=68.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CC------------CCcCCCCCeEEEEec
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LL------------PDSLSSGRAEYHQVD 71 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~------------~~~~~~~~v~~~~~D 71 (467)
..+|+|.|+ |-+|+.++..|...|.-+++++|++.-...+..++-- .. ......-+++.+..+
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence 568999988 8899999999999996689999987632211111100 00 000112235566677
Q ss_pred CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
+.+...+.+ ++++|+||.+.. ++.. .-..+-++|.+.++ .+|+.+..
T Consensus 197 i~~~~~~~~-~~~~DlVvd~~D------n~~~-------~r~~ln~~c~~~~~-p~i~~~~~ 243 (353)
T 3h5n_A 197 INDYTDLHK-VPEADIWVVSAD------HPFN-------LINWVNKYCVRANQ-PYINAGYV 243 (353)
T ss_dssp CCSGGGGGG-SCCCSEEEECCC------CSTT-------HHHHHHHHHHHTTC-CEEEEEEE
T ss_pred cCchhhhhH-hccCCEEEEecC------ChHH-------HHHHHHHHHHHhCC-CEEEEEEe
Confidence 766554566 889999998652 1110 11235578888887 47776543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.012 Score=59.67 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~ 44 (467)
++|+|.|+| +|++|..++..|.+. | ++|+++||++.
T Consensus 4 ~~mkI~VIG-~G~mG~~lA~~La~~g~G-~~V~~~d~~~~ 41 (467)
T 2q3e_A 4 EIKKICCIG-AGYVGGPTCSVIAHMCPE-IRVTVVDVNES 41 (467)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTT-SEEEEECSCHH
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhcCCC-CEEEEEECCHH
Confidence 468999997 599999999999999 7 49999999765
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.07 Score=49.65 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|.|++|.+|+.++..|+++| .+|++.+|... .+.+.++.+
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~hs~t~--------------------------------~L~~~~~~A 205 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAK-ATVTTCHRFTT--------------------------------DLKSHTTKA 205 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------SHHHHHTTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCCch--------------------------------hHHHhcccC
Confidence 467899999999999999999999999 48998865321 356778899
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+||...+.
T Consensus 206 DIVI~Avg~ 214 (285)
T 3l07_A 206 DILIVAVGK 214 (285)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988873
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=56.98 Aligned_cols=74 Identities=20% Similarity=0.110 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH---HHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~ 83 (467)
.+.+|+|+||+|-+|...++.+...|. +|+++++++.+.. . .. .-+... ..|..+. +.+.+...
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~-~------~~----~~ga~~-~~~~~~~~~~~~~~~~~~ 214 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLK-I------AK----EYGAEY-LINASKEDILRQVLKFTN 214 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH-H------HH----HTTCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH-H------HH----HcCCcE-EEeCCCchHHHHHHHHhC
Confidence 567999999999999999999999994 9999998654110 0 00 012222 2344443 33333332
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+||++++
T Consensus 215 ~~g~D~vid~~g 226 (334)
T 3qwb_A 215 GKGVDASFDSVG 226 (334)
T ss_dssp TSCEEEEEECCG
T ss_pred CCCceEEEECCC
Confidence 5899999997
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0093 Score=56.06 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|+|+ |-+|+.++..|.+.|..+|++++|+..+.....+. +... .+.+.....+.. ++.+.+.++
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~---~~~~--~~~~~i~~~~~~---~l~~~l~~~ 195 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV---INNA--VGREAVVGVDAR---GIEDVIAAA 195 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH---HHHH--HTSCCEEEECST---THHHHHHHS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH---HHhh--cCCceEEEcCHH---HHHHHHhcC
Confidence 35789999998 89999999999999954799999986521100000 0000 011223333433 344566678
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+||++..
T Consensus 196 DiVInaTp 203 (283)
T 3jyo_A 196 DGVVNATP 203 (283)
T ss_dssp SEEEECSS
T ss_pred CEEEECCC
Confidence 88887765
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.0081 Score=59.84 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..+|+|.|+|. |++|..++..|.+ | ++|+++|+++.
T Consensus 34 ~~~mkIaVIGl-G~mG~~lA~~La~-G-~~V~~~D~~~~ 69 (432)
T 3pid_A 34 SEFMKITISGT-GYVGLSNGVLIAQ-N-HEVVALDIVQA 69 (432)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHT-T-SEEEEECSCHH
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHc-C-CeEEEEecCHH
Confidence 35679999975 9999999998887 9 59999999875
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.073 Score=49.49 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=46.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|.|.+|.+|+.++..|++.| .+|++..+... .+.+.++.+
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~g-AtVtv~hs~T~--------------------------------~L~~~~~~A 205 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLGG-CTVTVTHRFTR--------------------------------DLADHVSRA 205 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------CHHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCCCc--------------------------------CHHHHhccC
Confidence 468999999999999999999999999 59998865321 256778899
Q ss_pred CEEEEcccC
Q 012270 86 STVFYVDAT 94 (467)
Q Consensus 86 D~Vih~aa~ 94 (467)
|+||...+.
T Consensus 206 DIVI~Avg~ 214 (286)
T 4a5o_A 206 DLVVVAAGK 214 (286)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988873
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.011 Score=55.76 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|+|.|+| .|.+|+.++..|.+.|+ +|++++|++.
T Consensus 4 M~m~i~iiG-~G~~G~~~a~~l~~~g~-~V~~~~~~~~ 39 (299)
T 1vpd_A 4 MTMKVGFIG-LGIMGKPMSKNLLKAGY-SLVVSDRNPE 39 (299)
T ss_dssp --CEEEEEC-CSTTHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred ccceEEEEC-chHHHHHHHHHHHhCCC-EEEEEeCCHH
Confidence 347999998 59999999999999995 9999999764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.01 Score=58.34 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|+|+ |-+|+.+++.+...|. +|+++||++..... ..+.. ...+ ..+..+.+.+.+.+.++
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~-------~~~~~-g~~~---~~~~~~~~~l~~~l~~a 232 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGA-TVTVLDINIDKLRQ-------LDAEF-CGRI---HTRYSSAYELEGAVKRA 232 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHH-------HHHHT-TTSS---EEEECCHHHHHHHHHHC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHH-------HHHhc-CCee---EeccCCHHHHHHHHcCC
Confidence 35689999998 9999999999999995 99999997641100 00000 0111 23344566788888899
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||.+++.+
T Consensus 233 DvVi~~~~~p 242 (377)
T 2vhw_A 233 DLVIGAVLVP 242 (377)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCcC
Confidence 9999988744
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.01 Score=57.47 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~ 82 (467)
.+++++|+||+|-+|..+++.+... | .+|+++++++.... . ..+ . +... ..|..+.+ ++.+..
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~~~~~~----~---~~~-~---g~~~-~~~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVE----A---AKR-A---GADY-VINASMQDPLAEIRRIT 236 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHH----H---HHH-H---TCSE-EEETTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCCHHHHH----H---HHH-h---CCCE-EecCCCccHHHHHHHHh
Confidence 4679999999999999999999999 9 48999998764110 0 000 1 1222 23555433 244444
Q ss_pred h--CCCEEEEccc
Q 012270 83 E--GASTVFYVDA 93 (467)
Q Consensus 83 ~--~~D~Vih~aa 93 (467)
. ++|+||++++
T Consensus 237 ~~~~~d~vi~~~g 249 (347)
T 1jvb_A 237 ESKGVDAVIDLNN 249 (347)
T ss_dssp TTSCEEEEEESCC
T ss_pred cCCCceEEEECCC
Confidence 3 6899999987
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.061 Score=49.74 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++++|.|+++.+|+.++..|+++| .+|++.++... .+.+.++.+|
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~g-AtVtv~~~~t~--------------------------------~L~~~~~~AD 195 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRN-YTVSVCHSKTK--------------------------------DIGSMTRSSK 195 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------CHHHHHHHSS
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCC-CeEEEEeCCcc--------------------------------cHHHhhccCC
Confidence 57899999999999999999999999 59998875321 3567788899
Q ss_pred EEEEcccC
Q 012270 87 TVFYVDAT 94 (467)
Q Consensus 87 ~Vih~aa~ 94 (467)
+||...+.
T Consensus 196 IVI~Avg~ 203 (276)
T 3ngx_A 196 IVVVAVGR 203 (276)
T ss_dssp EEEECSSC
T ss_pred EEEECCCC
Confidence 99988874
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.023 Score=53.37 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=44.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
|+|.|+|. |.+|+.++..|.+.|+ +|++.+|++.... .....++.. .+++.++++++|+|
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~-----------~~~~~g~~~-------~~~~~~~~~~aDvv 61 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGC-SVTIWNRSPEKAE-----------ELAALGAER-------AATPCEVVESCPVT 61 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSGGGGH-----------HHHHTTCEE-------CSSHHHHHHHCSEE
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC-eEEEEcCCHHHHH-----------HHHHCCCee-------cCCHHHHHhcCCEE
Confidence 78999985 9999999999999995 9999999875211 011112222 12345667789999
Q ss_pred EEcc
Q 012270 89 FYVD 92 (467)
Q Consensus 89 ih~a 92 (467)
|-+.
T Consensus 62 i~~v 65 (287)
T 3pef_A 62 FAML 65 (287)
T ss_dssp EECC
T ss_pred EEEc
Confidence 9665
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.027 Score=53.94 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+|+|.|+|. |.+|+.++..|.+.|+ +|++.+|++.... .....++... .++.++++++|
T Consensus 30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~-----------~l~~~g~~~~-------~~~~e~~~~aD 89 (320)
T 4dll_A 30 YARKITFLGT-GSMGLPMARRLCEAGY-ALQVWNRTPARAA-----------SLAALGATIH-------EQARAAARDAD 89 (320)
T ss_dssp CCSEEEEECC-TTTHHHHHHHHHHTTC-EEEEECSCHHHHH-----------HHHTTTCEEE-------SSHHHHHTTCS
T ss_pred CCCEEEEECc-cHHHHHHHHHHHhCCC-eEEEEcCCHHHHH-----------HHHHCCCEee-------CCHHHHHhcCC
Confidence 4679999976 9999999999999995 9999999875210 0111133221 23456778899
Q ss_pred EEEEcc
Q 012270 87 TVFYVD 92 (467)
Q Consensus 87 ~Vih~a 92 (467)
+||-+.
T Consensus 90 vVi~~v 95 (320)
T 4dll_A 90 IVVSML 95 (320)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999665
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=56.84 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~ 83 (467)
.+.+|+|+|+ |-+|...++.+...|..+|+++++++.+.. + ....+...+ .|..+.+ .+.++..
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~--------~---~~~~Ga~~~-~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRE--------L---AKKVGADYV-INPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHH--------H---HHHHTCSEE-ECTTTSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH--------H---HHHhCCCEE-ECCCCcCHHHHHHHHcC
Confidence 4578999999 999999999999999328999998754110 0 001122222 3554422 2333332
Q ss_pred --CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
++|+||++++.. ......++.++..| +++.+++
T Consensus 234 g~g~D~vid~~g~~--------------~~~~~~~~~l~~~G--~iv~~g~ 268 (348)
T 2d8a_A 234 GNGVDVFLEFSGAP--------------KALEQGLQAVTPAG--RVSLLGL 268 (348)
T ss_dssp TSCEEEEEECSCCH--------------HHHHHHHHHEEEEE--EEEECCC
T ss_pred CCCCCEEEECCCCH--------------HHHHHHHHHHhcCC--EEEEEcc
Confidence 589999998721 12234455555444 7887765
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.02 Score=54.55 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=69.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEE-ecCCCHHHHHHHHhCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQ-VDVRDISQIKKVLEGAS 86 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~-~Dl~d~~~l~~~~~~~D 86 (467)
+|.|+|| |.+|..++..|+..|..+|+++|+.+......... +.+. .......... .|. ++++++|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~d---l~~~~~~~~~~~~i~~t~d~-------~a~~~aD 69 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALD---LAHAAAELGVDIRISGSNSY-------EDMRGSD 69 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHH---HHHHHHHHTCCCCEEEESCG-------GGGTTCS
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHH---HHHhhhhcCCCeEEEECCCH-------HHhCCCC
Confidence 5899998 99999999999888843699999876421100000 0010 0011222222 232 3578999
Q ss_pred EEEEcccCCCC-CCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcC
Q 012270 87 TVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (467)
Q Consensus 87 ~Vih~aa~~~~-~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS 132 (467)
+||-.++.+.. ...-......|+.-.+.+++.+.+.... .+|.+|-
T Consensus 70 ~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 70 IVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99999885432 2233456778888888999888876433 5565554
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=54.97 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
||+|.|+| .|.+|+.++..|.+.|+ +|++.+|++.
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-~V~~~dr~~~ 35 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-DVTVWNRNPA 35 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-CEEEECSSGG
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-eEEEEcCCHH
Confidence 46899997 59999999999999995 9999999875
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.031 Score=54.51 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecC--------------
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-------------- 72 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-------------- 72 (467)
.+.+|+|+|+ |-+|...++.+...|. +|+++||++..... ...-+.+++..|.
T Consensus 183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~-----------~~~lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 183 KPASALVLGV-GVAGLQALATAKRLGA-KTTGYDVRPEVAEQ-----------VRSVGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp CCCEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSSGGGHHH-----------HHHTTCEECCCC-------------CH
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH-----------HHHcCCeEEeccccccccccchhhhhH
Confidence 4579999998 9999999999999995 99999998752100 0011233322111
Q ss_pred ----CCHHHHHHHHhCCCEEEEcccCC
Q 012270 73 ----RDISQIKKVLEGASTVFYVDATD 95 (467)
Q Consensus 73 ----~d~~~l~~~~~~~D~Vih~aa~~ 95 (467)
.+.+.+.++++++|+||.++..+
T Consensus 250 ~~~~~~~~~l~e~l~~aDIVI~tv~iP 276 (381)
T 3p2y_A 250 AERAQQQQALEDAITKFDIVITTALVP 276 (381)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCT
T ss_pred HHHhhhHHHHHHHHhcCCEEEECCCCC
Confidence 12456778889999999887543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.023 Score=54.89 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|||+||+|-+|...++.+...|. +|+++++++.
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~ 195 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTA 195 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence 467999999999999999999999994 9999998664
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.15 Score=47.88 Aligned_cols=89 Identities=9% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEE-EEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
+.++|+|.|++|-.|+.+++.+++.| ++++ .+++... .. + ..++..+ .++.++.+
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g-~~~v~~VnP~~~----g~-------~---i~G~~vy-------~sl~el~~~~ 63 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYG-TKIVAGVTPGKG----GM-------E---VLGVPVY-------DTVKEAVAHH 63 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCT----TC-------E---ETTEEEE-------SSHHHHHHHS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcC-CeEEEEECCCCC----Cc-------e---ECCEEee-------CCHHHHhhcC
Confidence 46799999999999999999999998 5643 5544321 00 0 0122322 12344455
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
++|+++-+.. -..+..+++.|.+.|++.+|.+++
T Consensus 64 ~~Dv~Ii~vp---------------~~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 64 EVDASIIFVP---------------APAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp CCSEEEECCC---------------HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEecC---------------HHHHHHHHHHHHHCCCCEEEEECC
Confidence 7999986653 234567888888899976776554
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.17 Score=49.16 Aligned_cols=109 Identities=9% Similarity=0.027 Sum_probs=57.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEcCCCCcc-----CCCCcCCCCCCCcCC--CC-----CeEEEEecCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQ-----LDPSESNSLLPDSLS--SG-----RAEYHQVDVR 73 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~--~~-----~v~~~~~Dl~ 73 (467)
++||.|.|+ |.||+.+++.|.++ ...+|+.++-..... .......+.+..... .. +-.......+
T Consensus 2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (380)
T 2d2i_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (380)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence 469999999 99999999999987 434666554320000 000000000100000 01 1112222345
Q ss_pred CHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 74 d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
|++++.-.-.++|+||-+++.... ...+....+.|++|+|..-+
T Consensus 81 dp~~l~w~~~gvDvV~e~TG~f~s---------------~e~a~~hl~aGakkVVIs~p 124 (380)
T 2d2i_A 81 NPLNLPWKEWDIDLVIESTGVFVT---------------AEGASKHIQAGAKKVLITAP 124 (380)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCB---------------HHHHHHHHHTTCSEEEESSC
T ss_pred ChHHCCcccCCCCEEEECCCcccc---------------HHHHHHHHHcCCcEEEEcCC
Confidence 666542111379999999885432 23444555679988766554
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.02 Score=54.16 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+|+|.|+| .|.+|+.++..|.+.|+ +|+++||++.
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~-~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPG-GVTVYDIRIE 49 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTT-CEEEECSSTT
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence 46899997 59999999999999995 9999999875
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.15 Score=49.01 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=26.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh---cCCcEEEEEcC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDS 41 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~---~g~~~V~~~~r 41 (467)
++||.|.|+ |+||+.+++.|.+ +...+|+.++-
T Consensus 2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~ 37 (339)
T 2x5j_O 2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINE 37 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence 369999998 9999999999998 64346665543
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.099 Score=50.05 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=26.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
|+||.|.|. |+||+.+++.|.++.+.+|+.++-
T Consensus 1 ~ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~ 33 (330)
T 1gad_O 1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAIND 33 (330)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred CeEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcC
Confidence 358999995 999999999999876446666654
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.1 Score=54.36 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=69.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC-------C---------CCCCcCCCCCeEEEEec
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-------S---------LLPDSLSSGRAEYHQVD 71 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~-------~---------~~~~~~~~~~v~~~~~D 71 (467)
..+|+|.|+ |-+|+.+++.|...|.-.++++|...-...+..++- + .+......-+++.+..+
T Consensus 17 ~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~ 95 (640)
T 1y8q_B 17 GGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95 (640)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred cCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 368999988 889999999999999669999998653221111110 0 00011112335556677
Q ss_pred CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 72 l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
+.+.....+.++++|+||.+.. |...-..+-++|.+.++ .+|+.++...+
T Consensus 96 i~~~~~~~~~~~~~DlVvda~D--------------n~~aR~~ln~~c~~~~i-PlI~~g~~G~~ 145 (640)
T 1y8q_B 96 IMNPDYNVEFFRQFILVMNALD--------------NRAARNHVNRMCLAADV-PLIESGTAGYL 145 (640)
T ss_dssp TTSTTSCHHHHTTCSEEEECCS--------------CHHHHHHHHHHHHHHTC-CEEEEEEETTE
T ss_pred cchhhhhHhhhcCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEEEeccc
Confidence 7543222456789999997642 12233456677888776 47776655433
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.014 Score=56.95 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC---CccCCCCcCCCCCCCcCCCCCeEEEEecCCC--HHHHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ---SLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVL 82 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~ 82 (467)
+.+|+|+|+ |-+|..+++.+...|. +|+++++++ ... +....-++..+ | .+ .+++.+.-
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~-----------~~~~~~ga~~v--~-~~~~~~~~~~~~ 244 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGL-EVWMANRREPTEVEQ-----------TVIEETKTNYY--N-SSNGYDKLKDSV 244 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTC-EEEEEESSCCCHHHH-----------HHHHHHTCEEE--E-CTTCSHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCccchHHH-----------HHHHHhCCcee--c-hHHHHHHHHHhC
Confidence 789999999 9999999999999995 999999876 310 00011234444 5 44 12333311
Q ss_pred hCCCEEEEcccC
Q 012270 83 EGASTVFYVDAT 94 (467)
Q Consensus 83 ~~~D~Vih~aa~ 94 (467)
.++|+||++++.
T Consensus 245 ~~~d~vid~~g~ 256 (366)
T 2cdc_A 245 GKFDVIIDATGA 256 (366)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 469999999874
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.025 Score=53.49 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
++|+|.|+|+ |.+|+.++..|.+.|+ +|++++|++.
T Consensus 3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~-~V~~~~~~~~ 38 (301)
T 3cky_A 3 KSIKIGFIGL-GAMGKPMAINLLKEGV-TVYAFDLMEA 38 (301)
T ss_dssp -CCEEEEECC-CTTHHHHHHHHHHTTC-EEEEECSSHH
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence 3579999985 9999999999999995 9999998764
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.06 Score=52.90 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEec---------------
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD--------------- 71 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D--------------- 71 (467)
.+.+|+|+|+ |-+|...++.+...|. +|+++|+++..... .. .-+.+++..+
T Consensus 189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~-------~~----~~G~~~~~~~~~~~~d~~~~~~ya~ 255 (405)
T 4dio_A 189 PAAKIFVMGA-GVAGLQAIATARRLGA-VVSATDVRPAAKEQ-------VA----SLGAKFIAVEDEEFKAAETAGGYAK 255 (405)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSTTHHHH-------HH----HTTCEECCCCC--------------
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH-------HH----HcCCceeecccccccccccccchhh
Confidence 4579999998 9999999999999995 99999998752100 00 0112222111
Q ss_pred -CCC------HHHHHHHHhCCCEEEEcccCC
Q 012270 72 -VRD------ISQIKKVLEGASTVFYVDATD 95 (467)
Q Consensus 72 -l~d------~~~l~~~~~~~D~Vih~aa~~ 95 (467)
+++ .+.+.++++++|+||.++..+
T Consensus 256 e~s~~~~~~~~~~l~e~l~~aDVVI~tvlip 286 (405)
T 4dio_A 256 EMSGEYQVKQAALVAEHIAKQDIVITTALIP 286 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHTCSEEEECCCCS
T ss_pred hcchhhhhhhHhHHHHHhcCCCEEEECCcCC
Confidence 222 346888899999999987644
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.022 Score=54.95 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH---HHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~ 83 (467)
.+++|+|+|+ |-+|..+++.+...|. +|+++++++.... . ....+... ..|..+. +.+.++..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~--------~---~~~lGa~~-~~d~~~~~~~~~~~~~~~ 229 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDEKLE--------L---AKELGADL-VVNPLKEDAAKFMKEKVG 229 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHHHHH--------H---HHHTTCSE-EECTTTSCHHHHHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEeCCHHHHH--------H---HHHCCCCE-EecCCCccHHHHHHHHhC
Confidence 4679999999 6699999999999994 9999998764110 0 00112222 2465542 23333335
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
++|+||++++.. ......+++++..| +++.+++
T Consensus 230 ~~d~vid~~g~~--------------~~~~~~~~~l~~~G--~~v~~g~ 262 (339)
T 1rjw_A 230 GVHAAVVTAVSK--------------PAFQSAYNSIRRGG--ACVLVGL 262 (339)
T ss_dssp SEEEEEESSCCH--------------HHHHHHHHHEEEEE--EEEECCC
T ss_pred CCCEEEECCCCH--------------HHHHHHHHHhhcCC--EEEEecc
Confidence 799999998721 12234455555544 7777665
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.19 Score=48.40 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
.+|++|.|.|+ |+||+.+++.|.+++..+|+.++-
T Consensus 15 ~~~ikVgI~G~-G~iGr~llR~l~~~p~veivaind 49 (354)
T 3cps_A 15 YFQGTLGINGF-GRIGRLVLRACMERNDITVVAIND 49 (354)
T ss_dssp ---CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred CcceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecC
Confidence 35679999999 999999999999875457776653
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.051 Score=54.54 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|+||+|-||...++.+...| .+|+++++++.
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~~ 256 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQ 256 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHH
Confidence 46799999999999999999999999 48888887554
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.24 Score=47.39 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=25.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEc
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTD 40 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~ 40 (467)
|++|.|.|+ |.||+.+++.|.++ ...+|+.++
T Consensus 1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaIn 34 (337)
T 1rm4_O 1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVIN 34 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 358999999 99999999999987 433666554
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.16 Score=48.27 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+|+|.|.|. |-||+.+++.|...| .+|.+.+|++.. ..++.... ..+++.++++.+
T Consensus 137 l~g~tvGIiG~-G~IG~~vA~~l~~~G-~~V~~~dr~~~~----------------~~~~~~~~----~~~~l~ell~~a 194 (315)
T 3pp8_A 137 REEFSVGIMGA-GVLGAKVAESLQAWG-FPLRCWSRSRKS----------------WPGVESYV----GREELRAFLNQT 194 (315)
T ss_dssp STTCCEEEECC-SHHHHHHHHHHHTTT-CCEEEEESSCCC----------------CTTCEEEE----SHHHHHHHHHTC
T ss_pred cCCCEEEEEee-CHHHHHHHHHHHHCC-CEEEEEcCCchh----------------hhhhhhhc----ccCCHHHHHhhC
Confidence 45789999976 999999999999999 599999987641 01222222 236788899999
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+|+-+..
T Consensus 195 DiV~l~~P 202 (315)
T 3pp8_A 195 RVLINLLP 202 (315)
T ss_dssp SEEEECCC
T ss_pred CEEEEecC
Confidence 99987664
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.15 Score=48.92 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=26.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc--CCcEEEEEc
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTD 40 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~--g~~~V~~~~ 40 (467)
++||.|.|+ |.||+.+++.|.++ +..+|+.++
T Consensus 2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaIn 35 (339)
T 3b1j_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAIN 35 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 469999999 99999999999987 434666554
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.09 Score=49.07 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|.|+ |.+|+.++..|.+.|+ +|++++|++.
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~-~V~~~~r~~~ 34 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGH-EVQGWLRVPQ 34 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCcc
Confidence 58999998 9999999999999995 9999999764
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.036 Score=52.11 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+||+|.|+| .|.+|+.++..|.+.|+ +|++.+ ++.
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~-~V~~~~-~~~ 36 (295)
T 1yb4_A 2 NAMKLGFIG-LGIMGSPMAINLARAGH-QLHVTT-IGP 36 (295)
T ss_dssp --CEEEECC-CSTTHHHHHHHHHHTTC-EEEECC-SSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-EEEEEc-CHH
Confidence 467999998 59999999999999995 999888 543
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.20 E-value=0.28 Score=47.02 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=26.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
++||.|.|+ |.||+.+++.|.++...+|+.+.-
T Consensus 3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d 35 (337)
T 3e5r_O 3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVND 35 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEEC
Confidence 469999999 999999999999875446666653
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.014 Score=53.89 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.||+|.|+| .|.+|+.+++.|.+.| ++|.+.+|++.
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g-~~v~~~~~~~~ 37 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTP-HELIISGSSLE 37 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSS-CEEEEECSSHH
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCC-CeEEEECCCHH
Confidence 468999998 5999999999999999 49999999764
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.04 Score=53.19 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~ 42 (467)
.|.+|.|.||||++|+.|++.|.++...+++.+...
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~ 47 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR 47 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 356899999999999999999999875577777643
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.061 Score=52.86 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++|+|+|+ |-+|...++.+...|. +|+++||++.
T Consensus 171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRAA 206 (384)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCST
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence 4689999996 9999999999999995 8999999764
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.17 Score=47.55 Aligned_cols=89 Identities=7% Similarity=0.051 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEE-EEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
+.++|.|.|+||.+|+.+++.+.+.| ++++ .+++... . + + ..++..+ .+ ++++.+
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g-~~~V~~V~p~~~----g--~-----~---~~G~~vy----~s---l~el~~~~ 63 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYG-TKMVGGVTPGKG----G--T-----T---HLGLPVF----NT---VREAVAAT 63 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCT----T--C-----E---ETTEEEE----SS---HHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCcc----c--c-----e---eCCeecc----CC---HHHHhhcC
Confidence 46799999999999999999999988 4643 4444211 0 0 0 0123221 22 344444
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
++|+++-+... .....+++.|.+.|++-+|-+++
T Consensus 64 ~~D~viI~tP~---------------~~~~~~~~ea~~~Gi~~iVi~t~ 97 (288)
T 2nu8_A 64 GATASVIYVPA---------------PFCKDSILEAIDAGIKLIITITE 97 (288)
T ss_dssp CCCEEEECCCG---------------GGHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEecCH---------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 79999976532 12346777888889876565444
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.048 Score=54.35 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+.|.+|.|.| .||+|-.++..|.+.|| +|+++|.++.
T Consensus 19 ~~m~~IaViG-lGYVGLp~A~~~A~~G~-~V~g~Did~~ 55 (444)
T 3vtf_A 19 SHMASLSVLG-LGYVGVVHAVGFALLGH-RVVGYDVNPS 55 (444)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHHTC-EEEEECSCHH
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHhCCC-cEEEEECCHH
Confidence 4577999995 59999999999999995 9999998775
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.14 Score=47.86 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++++|.|++..+|+.++..|++.| .+|++.++... .+.+.++.+
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~hs~t~--------------------------------~L~~~~~~A 209 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSKTA--------------------------------HLDEEVNKG 209 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------SHHHHHTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEECCcc--------------------------------cHHHHhccC
Confidence 467899999999999999999999999 59998865321 357788899
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||-..+..
T Consensus 210 DIVI~Avg~p 219 (301)
T 1a4i_A 210 DILVVATGQP 219 (301)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCc
Confidence 9999887743
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.054 Score=45.01 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=29.2
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHhcCCcEEEEEcCC
Q 012270 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDST 42 (467)
Q Consensus 7 ~~~~ilVtGat---GfiG~~lv~~Ll~~g~~~V~~~~r~ 42 (467)
.+++|.|.|++ |-+|+.+++.|++.| ++|+.++..
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~vnp~ 49 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPR 49 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGG
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCC-CEEEEeCCC
Confidence 35789999999 899999999999999 576666543
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.02 Score=54.38 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
++|+|.|+| .|.+|+.+++.|.+.|+ +|++.+|++.
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G~-~V~~~dr~~~ 43 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQGK-RVAIWNRSPG 43 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTTC-CEEEECSSHH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence 467899997 59999999999999995 9999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 467 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 6e-32 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-31 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-28 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 3e-28 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 3e-23 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 1e-22 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-21 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 1e-20 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-17 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 1e-17 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-16 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 5e-15 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-14 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-12 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 1e-11 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-11 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 5e-11 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 7e-11 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 9e-11 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 1e-10 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 4e-10 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-08 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 1e-07 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 2e-07 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 3e-05 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 0.003 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 0.004 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 123 bits (309), Expect = 6e-32
Identities = 67/364 (18%), Positives = 119/364 (32%), Gaps = 56/364 (15%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
+ G GF+G ++V +++ + V D L + + L D S R + D+
Sbjct: 5 ITGGAGFIGSAVVRHIIKNTQDTVVNIDK-----LTYAGNLESLSDISESNRYNFEHADI 59
Query: 73 RDISQIKKVLEGAS--TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACREC----- 122
D ++I ++ E V ++ A D + + G ++ R+
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 123 ----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------KAQAEALVL 172
R + ST +V D H + + KA ++ LV
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 173 FANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230
GL T SN +GP +L+PL++ A G I G G+ + D+ YVE+
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH 239
Query: 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWY 290
A A AG + I K D + I + + T
Sbjct: 240 ARALHMVVTE------GKAGETYNIGGHNEKKNLDVVFTICD---LLDEIVPKATSYREQ 290
Query: 291 IILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSST 350
I + R D + +G+ P+ + E G+ T
Sbjct: 291 ITYVADRPGH--------------------DRRYAIDAGKISRELGWKPLETFESGIRKT 330
Query: 351 IQSF 354
++ +
Sbjct: 331 VEWY 334
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 121 bits (303), Expect = 2e-31
Identities = 64/347 (18%), Positives = 121/347 (34%), Gaps = 45/347 (12%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V G GF+G V +LL V + L + + + L + R + D+
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDI 64
Query: 73 RDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
RD + + L G + + D + VQG + ++ + V R+V+
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVH 124
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
ST V GS D + E+ + KA ++ + + GL R N
Sbjct: 125 VSTNQV--YGSIDSGSWTESSPL--EPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 190 VFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+GP +L+PL V G T + G G N+ ++ + ++
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR----- 235
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
AG + I + + I+L+ LG + + + ++ G
Sbjct: 236 -AGEIYHIGGGLELTNRELTGILLDSLGADWSSV--------------RKVADRKG---- 276
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ D ++ +GY P VS +G++ T++ +
Sbjct: 277 ------------HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWY 311
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 113 bits (284), Expect = 1e-28
Identities = 50/358 (13%), Positives = 106/358 (29%), Gaps = 26/358 (7%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LLE G V S + + + H D+ D
Sbjct: 9 VTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDT 67
Query: 76 SQIKKVLEGAS-----TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR---RL 127
S + ++L + + ++ + + G ++ A R + R
Sbjct: 68 SNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRF 127
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
ST+++ G ET + K A + + G+ C
Sbjct: 128 YQASTSELY--GLVQEIPQKETTPF--YPRSPYAVAKLYAYWITVNYRESYGMYACNGIL 183
Query: 188 SNVFGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
N P ++ + N+A+ + +G+ +++ D+ + ++ +
Sbjct: 184 FNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQ-- 241
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
F I F+ + LG + F ++ +
Sbjct: 242 -----QEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 296
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ ++ Y T D A + +G+ P ++L E VS + + A+
Sbjct: 297 VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (279), Expect = 3e-28
Identities = 61/357 (17%), Positives = 113/357 (31%), Gaps = 73/357 (20%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE------ 66
+ G GFVG L +L+ G + V D+ +GR
Sbjct: 6 ITGGAGFVGSHLTDKLMMDGHEVTVV-------------------DNFFTGRKRNVEHWI 46
Query: 67 -YHQVDVRDISQIKKVLEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACREC 122
+ ++ + ++ + ++++ + + G N++ +
Sbjct: 47 GHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 106
Query: 123 KVRRLVYNSTADVVFDGS-HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
R L+ ST++V D H + + K AE + +G+
Sbjct: 107 GAR-LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVE 165
Query: 182 TCALRPSNVFGPG----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
R N FGP D ++V + A G + GSG F YV ++ + V
Sbjct: 166 VRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL 225
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297
+ S + N E +F +I +G +++
Sbjct: 226 MNSNVSS-------PVNLGNPEEHTILEFAQLIKNLVGSGSE---------------IQF 263
Query: 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ E + R D A+ +G+ PVV LEEG++ I F
Sbjct: 264 LSEAQD----------------DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 304
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 98.1 bits (243), Expect = 3e-23
Identities = 68/354 (19%), Positives = 118/354 (33%), Gaps = 44/354 (12%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+ ++ GF+G +L+ LL+L + +V + + Q + E SL+ + S ++
Sbjct: 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS-NFKF 74
Query: 68 HQVDVR---DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
Q D+R D + ++ + + + +D + G N++ A R+ KV
Sbjct: 75 IQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV 134
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ Y +++ G H E K K E + G T
Sbjct: 135 QSFTYAASSSTY--GDHPGLPKVED--TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIG 190
Query: 185 LRPSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
LR NVFG ++P + G +I G GE DF Y+EN A++ AA
Sbjct: 191 LRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 250
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
A V + I + +GL +
Sbjct: 251 TAGLDARNQV----YNIAVGGRTSLNQLFFALRDGLAENGVSYHRE------PVYRDFRE 300
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
+ R D A K +GY+P + GV+ +
Sbjct: 301 GD--------------------VRHSLADISKAAKLLGYAPKYDVSAGVALAMP 334
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 96.9 bits (240), Expect = 1e-22
Identities = 66/397 (16%), Positives = 120/397 (30%), Gaps = 75/397 (18%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ GF+ + RL G V +D ++ + E+H VD
Sbjct: 19 SITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTEDMFC-----------DEFHLVD 66
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIV----QGAKNVVTACRECKVRRL 127
+R + KV EG VF + A + + +I+ + N++ A R ++R
Sbjct: 67 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRF 126
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCW---KFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
Y S+A + + + QD K E L N G+
Sbjct: 127 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRI 186
Query: 185 LRPSNVFGPGDT-------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
R N++GP T + G G FT+++ +
Sbjct: 187 GRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRL 246
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLV 295
+ S I + E + + ++L + P I P GV
Sbjct: 247 TK-------SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGV-------- 291
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF- 354
R R D ++ +G++P + L+EG+ T
Sbjct: 292 --------------------------RGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIK 325
Query: 355 SHLARDSSL-----AYSRDFNEQSKVEKLLGGGKVAD 386
+ ++ + Y ++ LG + AD
Sbjct: 326 EQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAAD 362
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.7 bits (229), Expect = 2e-21
Identities = 47/359 (13%), Positives = 100/359 (27%), Gaps = 35/359 (9%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LLE G + + + S E P + G + H D+ D
Sbjct: 9 ITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDS 68
Query: 76 SQIKKVLEGA-----STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR---RL 127
+ + K++ + ++ D + G ++ A + C + +
Sbjct: 69 TCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKF 128
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
ST+++ G ET + K A +V+ L
Sbjct: 129 YQASTSELY--GKVQEIPQKETTPF--YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGIL 184
Query: 188 SNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
N P ++ + + F +G+ + D+ + ++ A +
Sbjct: 185 FNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND 244
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
+ +A K + + + G + + +
Sbjct: 245 EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDL----- 299
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
Y DC A++ + + P V+ +E V + + L R
Sbjct: 300 ------------KYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 346
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 90.4 bits (223), Expect = 1e-20
Identities = 45/357 (12%), Positives = 99/357 (27%), Gaps = 54/357 (15%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R+ +V G G L LLE G V + S++ L + G +Y
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVA-----RRSSDTRWRLRELGIEGDIQYE 54
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNC-----YMIIVQGAKNVVTACRECK 123
D+ D +++ + A + + ++ G +++ A R+
Sbjct: 55 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS 114
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
Y ++ +F G DE + K + + GL
Sbjct: 115 PETRFYQASTSEMF-GLIQAERQDENTPFYP--RSPYGVAKLYGHWITVNYRESFGLHAS 171
Query: 184 ALRPSNVFGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+ N P ++ + + + +G+ + D+ + + A
Sbjct: 172 SGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLM 231
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297
+ + VA ++ + + P P V +
Sbjct: 232 LQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLG----- 286
Query: 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ AQ+ +G+ P SL+E + +++
Sbjct: 287 -----------------------------NPAKAQRVLGWKPRTSLDELIRMMVEAD 314
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 81.5 bits (200), Expect = 1e-17
Identities = 52/358 (14%), Positives = 99/358 (27%), Gaps = 59/358 (16%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G++G ++LL+ G ++ + + S S + + L + + D+R+
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 76 SQIKKVLE--GASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ + ++L TV + + Y V G +++A R V+ +++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+A V D E+ + L LR N
Sbjct: 123 SSATVYGD--QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 191 FGPGD------------TQLVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAHVCA 237
G L+P + +A I G+ D T V + H A
Sbjct: 181 VGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
Query: 238 AEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
+ + I NL D ++ + G + P
Sbjct: 241 DGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAP---------- 290
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
R D A + + + +L+E T
Sbjct: 291 ----------RREGD-----------LPAYWADASKADRELNWRVTRTLDEMAQDTWH 327
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 81.7 bits (200), Expect = 1e-17
Identities = 43/355 (12%), Positives = 92/355 (25%), Gaps = 45/355 (12%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LL G + + + + + P +++ + H D+ D
Sbjct: 9 ITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDA 68
Query: 76 SQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
S +++ ++ ++ + ++ GA ++ A R +
Sbjct: 69 SSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTV 128
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
++ T + + K A + GL C N
Sbjct: 129 KYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNH 188
Query: 191 FGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
P ++ L + TK +G+ + D+ + + A +
Sbjct: 189 ESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPD 248
Query: 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304
VA + +L + + P V
Sbjct: 249 DYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG------------ 296
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
D A++ +G+ P V E+ V + LA+
Sbjct: 297 ----------------------DASKAKEVLGWKPQVGFEKLVKMMVDEDLELAK 329
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 78.4 bits (192), Expect = 1e-16
Identities = 46/363 (12%), Positives = 100/363 (27%), Gaps = 79/363 (21%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
+ RG VG ++ +L + G + V + ++++
Sbjct: 7 IAGHRGMVGSAIRRQLEQRG-DVELVLRT-------------------------RDELNL 40
Query: 73 RDISQIKKVLEGAST------VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
D + V N + + N++ A + V +
Sbjct: 41 LDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK 100
Query: 127 LVYNSTADVVFD-GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCAL 185
L++ ++ + + + + K L N G ++
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 186 RPSNVFGPGDTQLVPLLVNLAKPGWTKF-----------IIGSGENMSDFTYVENVAHAH 234
P+N++GP D + + GSG M +F +V+++A A
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 235 VCAAEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYI 291
+ E + N+ + I + +GY+ + +
Sbjct: 221 IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------ 274
Query: 292 ILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
+ R + +G+ +SLE G++ST
Sbjct: 275 --------------------------KPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTY 308
Query: 352 QSF 354
Q F
Sbjct: 309 QWF 311
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.9 bits (180), Expect = 5e-15
Identities = 50/364 (13%), Positives = 107/364 (29%), Gaps = 63/364 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G++G V+ L+E G V + + S + + + L+ +++VD+ D
Sbjct: 9 GAGYIGSHTVVELIENGYDCVVADNLSNS-----TYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 76 SQIKKV--LEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
++KV +V + +T Y + G ++ ++ V + V++
Sbjct: 64 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 123
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPS 188
S+A V D + + C + K E ++ N D LR
Sbjct: 124 SSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYF 183
Query: 189 NV--------FGPGDTQ----LVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAHV 235
N G L+P + +A K I G + D T + + H
Sbjct: 184 NPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVD 243
Query: 236 CAAEALDSRM-------VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288
A + + + + + + ++ + G P+
Sbjct: 244 LAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTG---- 299
Query: 289 WYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348
R T A++ + + + +E+
Sbjct: 300 ----------------RRAGD-----------VLNLTAKPDRAKRELKWQTELQVEDSCK 332
Query: 349 STIQ 352
+
Sbjct: 333 DLWK 336
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 71.6 bits (174), Expect = 3e-14
Identities = 55/358 (15%), Positives = 107/358 (29%), Gaps = 64/358 (17%)
Query: 16 GRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G GF+G + V + V V D L + + + L +++ R E D+ D
Sbjct: 10 GAGFIGSNFVHYVYNNHPDVHVTVLDK-----LTYAGNKANL-EAILGDRVELVVGDIAD 63
Query: 75 ISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR----- 126
+ K+ A + + D + +D G ++ A R+ +R
Sbjct: 64 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123
Query: 127 --LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ + G + T + KA ++ +V G+
Sbjct: 124 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATI 183
Query: 185 LRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
SN +GP + +P + G + G G+N+ D+ + + +
Sbjct: 184 SNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI----- 238
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL----PTGVVWYIILLVKWI 298
G + I + L +ILE +G + + Y I
Sbjct: 239 -LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAI------ 291
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSP-VVSLEEGVSSTIQSFS 355
D + +G++P EG+ TIQ ++
Sbjct: 292 ----------------------------DASKLRDELGWTPQFTDFSEGLEETIQWYT 321
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 2e-12
Identities = 44/366 (12%), Positives = 105/366 (28%), Gaps = 63/366 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLSSGRAEYHQVD 71
V G G++G VL LLE G V + + + + S SL L+ E+ ++D
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMD 66
Query: 72 VRDISQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ D ++++ + S + + A + + Y + + G ++ + V+
Sbjct: 67 ILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK- 125
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL-FANNIDGLLTCAL 185
+ + + + + K E ++ L
Sbjct: 126 --NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLL 183
Query: 186 RPSNVFGPGD------------TQLVPLLVNLA-------KPGWTKFIIGSGENMSDFTY 226
R N G L+P + +A + G + D+ +
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
Query: 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
V ++A H+ A + + + + + G + P+ +
Sbjct: 244 VVDLAKGHIAAL---RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA-- 298
Query: 287 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
+ + + AQ+ +G++ + L+
Sbjct: 299 ---------RREGD--------------------VAACYANPSLAQEELGWTAALGLDRM 329
Query: 347 VSSTIQ 352
+
Sbjct: 330 CEDLWR 335
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 63.4 bits (152), Expect = 1e-11
Identities = 40/360 (11%), Positives = 88/360 (24%), Gaps = 46/360 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++L GF+G L RLL V D + + L+ + + D
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDI----------GSDAISRFLNHPHFHFVEGD 53
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ S+ + V ++ + + + V+
Sbjct: 54 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 113
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDL------MCDLKAQAEALVLFANNIDGLLTCAL 185
+ + K + ++ +GL
Sbjct: 114 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 173
Query: 186 ----------RPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235
N G ++ + L+ G +I G+ FT + + A
Sbjct: 174 RPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 233
Query: 236 CAAEALDSRMVSVAGMAFFITNLEP-IKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
E + G I N E + ++L P + ++
Sbjct: 234 RIIE---NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 290
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ + R A + + + P + ++E + T+ F
Sbjct: 291 SSYYGKGYQD----------------VEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 334
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 62.4 bits (150), Expect = 3e-11
Identities = 58/368 (15%), Positives = 109/368 (29%), Gaps = 73/368 (19%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G +L L G + V D+ L + L S G E+ D+R+
Sbjct: 8 GCGFLGSNLASFALSQG-IDLIVFDN-----LSRKGATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 76 SQIKKVLEGAS-----TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVY 129
+ + +++ + A + D+ + I V G N++ A R+ ++Y
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121
Query: 130 NSTADVVFDGSHDIHN------------GDETLTCCWKFQDLMCDLKAQAEALVLFANNI 177
+ST V D +N + F K A+ +L I
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 181
Query: 178 DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK----------FIIGSGENMSDFTYV 227
GL T R S+++G I G+G+ + D +
Sbjct: 182 FGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 241
Query: 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL---P 284
E++ + A + + T + + + ++ + F L
Sbjct: 242 EDMISLYFTALANVSK--IRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 299
Query: 285 TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLE 344
+ ++ D I +SP VS +
Sbjct: 300 SDQRVFVA----------------------------------DIKKITNAIDWSPKVSAK 325
Query: 345 EGVSSTIQ 352
+GV
Sbjct: 326 DGVQKMYD 333
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 61.3 bits (147), Expect = 5e-11
Identities = 26/274 (9%), Positives = 70/274 (25%), Gaps = 30/274 (10%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G G++G+ +V + LG + +D + A+ +
Sbjct: 7 LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQL----GAKLIEAS 62
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D ++ L+ V + +V A +E + S
Sbjct: 63 LDDHQRLVDALKQVDVVISA--------LAGGVLSHHILEQLKLVEAIKEAGNIKRFLPS 114
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
+ D + + + +
Sbjct: 115 EFGMDPDIMEHALQPGSITFIDKRKVRRAI--------------EAASIPYTYVSSNMFA 160
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251
G L L ++ P I G G + ++V + + + + ++
Sbjct: 161 GYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTM--- 217
Query: 252 AFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285
+ + + + + I I + +
Sbjct: 218 -YIRPPMNILSQKEVIQIWERLSEQNLDKIYISS 250
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 61.2 bits (147), Expect = 7e-11
Identities = 29/285 (10%), Positives = 69/285 (24%), Gaps = 43/285 (15%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA 65
+T V+ G G SL+ +G + V + +L +
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL------------QAIPNV 51
Query: 66 EYHQVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
Q + + + + + EGA F + + K++ A +
Sbjct: 52 TLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ---------AGDEIAIGKDLADAAKRAGT 102
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ S+ + L + ++ NN L
Sbjct: 103 IQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPL 162
Query: 185 LRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
+ + P + +V A + + +
Sbjct: 163 FQMELMPDGTFEWHAP--------------FDPDIPLPWLDAEHDVGPALLQIFKDGPQK 208
Query: 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
G +T E + + L + ++++P +
Sbjct: 209 ---WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEIK 249
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 61.0 bits (146), Expect = 9e-11
Identities = 53/395 (13%), Positives = 104/395 (26%), Gaps = 92/395 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDS------------TQSLQLDPSESNSLLPDSLSSG 63
G G++G V LL V + DS T+ + + +
Sbjct: 10 GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADR 69
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK 123
A DVR+ + V + V + + NVV R +
Sbjct: 70 YAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQ 129
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA---------QAEALVLFA 174
L + + +++ + D+ AE ++
Sbjct: 130 AMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDC 189
Query: 175 NNIDGLLTCALRPSNVFG-----------PGDTQLVPLLVNLAKPGW------------- 210
G+ LR N G G T L+P+++
Sbjct: 190 AEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDAS 249
Query: 211 ---------TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--- 258
T + G + D+ +V ++A AH+ A + ++ + F + NL
Sbjct: 250 TDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS 309
Query: 259 EPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316
+ + + + G+ P G Y++
Sbjct: 310 RGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVA----------------------- 346
Query: 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
A++ +G+ P E + T
Sbjct: 347 ----------ASDKAREVLGWKPKYDTLEAIMETS 371
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 43/375 (11%), Positives = 95/375 (25%), Gaps = 65/375 (17%)
Query: 4 DEAIPRTCVVL--NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS 61
+ +P +VL GFV +V +LLE G VR T + S +
Sbjct: 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSAS---KLANLQKRWDAKYP 60
Query: 62 SGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
D+ +V++GA+ V ++ + ++ + + G N + A
Sbjct: 61 GRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-----------------K 164
+ +++ V G W + + K
Sbjct: 121 TPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASK 180
Query: 165 AQAEALVLFANNIDGLLTCALRPS------NVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218
+AE + + +F P ++ +
Sbjct: 181 TEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL 240
Query: 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278
+ ++ H+ ++ + L+ +
Sbjct: 241 MPPQYYVSAVDIGLLHLGC------LVLPQIERRRVYGTAGTFDWNTVLATFRK----LY 290
Query: 279 PFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYS 338
P P + + L ++ + S + K +G
Sbjct: 291 PSKTFPA----------DFPDQGQDLSKFDTAPS----------------LEILKSLGRP 324
Query: 339 PVVSLEEGVSSTIQS 353
S+EE + + S
Sbjct: 325 GWRSIEESIKDLVGS 339
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 58.6 bits (140), Expect = 4e-10
Identities = 29/273 (10%), Positives = 81/273 (29%), Gaps = 35/273 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G++GR + L+LG + + + ++ L +S + A
Sbjct: 7 LLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLL--ESFKASGANIVHGS 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D + + + ++ V + ++ N++ A +E + + S
Sbjct: 64 IDDHASLVEAVKNVDVV------------ISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 111
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
D H + K + + +G+ + +
Sbjct: 112 EFGNDVDNVHAVEPAKSVFEVKAKVRRAIEA---------------EGIPYTYVSSNCFA 156
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251
G + A P I+G G F E++ + A + ++
Sbjct: 157 GYFLRS-LAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD----DPRTLNKT 211
Query: 252 AFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284
+ + + +++ + + +P
Sbjct: 212 LYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 54.1 bits (128), Expect = 1e-08
Identities = 50/375 (13%), Positives = 94/375 (25%), Gaps = 51/375 (13%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ V GF G L L L +G V+ L SL + + +
Sbjct: 9 KRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYS------LTAPTVPSLFETARVADGMQSE 61
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDF-----YNCYMIIVQGAKNVVTACRECK 123
D+RD +++ + + Y V G ++ A R
Sbjct: 62 IGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 121
Query: 124 VRRL-------VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
+ + ++ + G K + +
Sbjct: 122 GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYG 181
Query: 177 IDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
G +R NV G GD + + A II + + + +V +
Sbjct: 182 QHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGY 241
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
+ A+ L + A F N +K + +
Sbjct: 242 LLLAQKLYTDGAEYAEGWNFGPNDADATPVKN---------IVEQMVKYWGEGASWQLDG 292
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
HE + DC A+ +G+ P +L + +
Sbjct: 293 NAHPHE--------------------AHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWH 332
Query: 355 -SHLARDSSLAYSRD 368
+ L+ YS
Sbjct: 333 KNWLSGTDMHEYSIT 347
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 1e-07
Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 44/228 (19%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ G G + + + ++ G V V S A D
Sbjct: 7 AIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSEGPRP-----------AHVVVGD 54
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
V + + K + G V + L T + + ++ +GA+N+V A + V ++V +
Sbjct: 55 VLQAADVDKTVAGQDAVIVL----LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
+A +++D + + Q + D + L GL A+ P ++
Sbjct: 111 SAFLLWDPTKV----------PPRLQAVTDDHIRMHKVL-----RESGLKYVAVMPPHIG 155
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
T + G S ++ H +
Sbjct: 156 DQPLTGAY-------------TVTLDGRGPSRVISKHDLGHFMLRCLT 190
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 50.7 bits (119), Expect = 2e-07
Identities = 41/356 (11%), Positives = 85/356 (23%), Gaps = 21/356 (5%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----------LSSGR 64
G G+ G + L L + + V + + L SL P + L+
Sbjct: 9 GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKS 68
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYVDAT--------DLNTDDFYNCYMIIVQGAKNVV 116
E + D+ D + + + V ++ V G NV+
Sbjct: 69 IELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVL 128
Query: 117 TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
A +E + + + D + K + L +
Sbjct: 129 FAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVH 188
Query: 177 IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
+ + + Q V V + + + + + F N
Sbjct: 189 DSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAA 248
Query: 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296
L + ++ + ++ V + LV
Sbjct: 249 VGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVT 308
Query: 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
KLGL ++ A +G P + + S +
Sbjct: 309 KAGSKLGLDVKKMTVPNPR--VEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLN 362
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 21/252 (8%), Positives = 47/252 (18%), Gaps = 23/252 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
T +V G G+ + +L E + + ++
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSD-KFVAKGLVR----SAQGKEKIGGEADVFIGDITDA 59
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
+ Q L ++ + I G K +
Sbjct: 60 DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAA 119
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
+ + + + G +R
Sbjct: 120 KVAGVKHIVVVGSMGGTNPDHPLNKLGNGNIL----VWKRKAEQYLADSGTPYTIIRAGG 175
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVA 249
+ LLV + +VA + A ++
Sbjct: 176 LLDKEGGV-RELLVGKDDELLQ--------TDTKTVPRADVAEVCIQALLFEEA-----K 221
Query: 250 GMAFFITNLEPI 261
AF + +
Sbjct: 222 NKAFDLGSKPEG 233
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.7 bits (83), Expect = 0.003
Identities = 23/232 (9%), Positives = 44/232 (18%), Gaps = 42/232 (18%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+ ++ G G L+ R+L
Sbjct: 2 PKRVLLAGATGLTGEHLLDRILSEP----------------------------------- 26
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
V ++ +L + + A E R +
Sbjct: 27 TLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAV 86
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
++ V ++ L RP
Sbjct: 87 DFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARP 146
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
S +FGP + + + I ++A A A
Sbjct: 147 SLLFGPREEFRLAEI-------LAAPIARILPGKYHGIEACDLARALWRLAL 191
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.7 bits (83), Expect = 0.004
Identities = 26/274 (9%), Positives = 61/274 (22%), Gaps = 41/274 (14%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++ G +GR + +L ++ +D
Sbjct: 5 LITGANGQLGREIQKQLKGKNVEVIPTD---------------------------VQDLD 37
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ ++ + K V +T + N + V
Sbjct: 38 ITNVLAVNKFFNEKK-PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAE 96
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
+ D D + + A N +R + ++
Sbjct: 97 IVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPK---YYIVRTAWLY 153
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251
G G+ + + + + + T ++A + + +
Sbjct: 154 GDGNN---FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGT------ 204
Query: 252 AFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285
F T ++DF I G T
Sbjct: 205 -FHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTT 237
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 467 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.97 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.96 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.96 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.96 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.93 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.93 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.92 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.79 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.79 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.74 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.74 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.74 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.74 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.73 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.73 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.72 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.72 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.72 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.72 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.72 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.71 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.71 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.71 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.7 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.7 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.7 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.69 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.69 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.69 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.69 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.69 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.68 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.68 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.68 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.68 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.68 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.67 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.66 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.66 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.65 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.64 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.64 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.64 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.63 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.63 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.63 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.62 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.62 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.61 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.6 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.6 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.59 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.58 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.58 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.58 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.57 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.56 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.56 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.54 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.52 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.52 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.5 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.44 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.4 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.37 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.37 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.35 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.31 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.3 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.3 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.29 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.16 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.13 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.76 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.23 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.19 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.11 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.89 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.86 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.81 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.76 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.73 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.69 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.55 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.55 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.55 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.46 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.41 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.39 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.37 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.33 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.31 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.28 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.27 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.18 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.17 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.13 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.1 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.08 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.03 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.01 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.97 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.97 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.81 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.81 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.72 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.7 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.66 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.65 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.62 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.61 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.59 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.53 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.48 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.47 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.44 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.43 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.39 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.22 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.21 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.03 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.97 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.91 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.89 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.87 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.74 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.66 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.55 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.51 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.45 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.41 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.27 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.2 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.06 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.99 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.96 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.9 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 94.85 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.77 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.75 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.67 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.66 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.58 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.54 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.53 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.47 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.41 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.32 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.31 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.24 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.14 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.08 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.98 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.96 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.85 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.84 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.77 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.76 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.74 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.62 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.58 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.56 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.54 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.52 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 93.48 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.37 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.24 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.18 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.94 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.82 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.75 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 92.49 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 92.38 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.37 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.32 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.17 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.1 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.09 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.05 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.95 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.77 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.71 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.69 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 91.58 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.46 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 91.35 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 91.35 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.08 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 90.97 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 90.96 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.85 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.62 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 90.5 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.48 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.45 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.4 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 90.11 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 89.99 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 89.97 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 89.96 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 89.79 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 89.73 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.55 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 89.39 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 89.21 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 88.94 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 88.9 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.88 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 88.65 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.59 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 88.38 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 88.12 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 87.9 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.89 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 87.68 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.62 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 87.41 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 87.34 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.16 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 87.07 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 86.8 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.8 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.57 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 86.45 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 86.41 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 86.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.95 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 85.73 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.34 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 85.34 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.75 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 84.7 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 84.06 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.84 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 83.4 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 82.67 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.52 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 82.33 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 81.76 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 81.66 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 81.16 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 81.13 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 80.34 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 80.26 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.9e-47 Score=372.85 Aligned_cols=306 Identities=21% Similarity=0.232 Sum_probs=253.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc-----EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC-----IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
|||||||||||||++|+++|+++|+. +|+.+|+...... . ..+.......+++++.+|+.+.........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~---~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN---R--ANLAPVDADPRLRFVHGDIRDAGLLARELR 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC---G--GGGGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc---H--hHhhhhhcCCCeEEEEeccccchhhhcccc
Confidence 68999999999999999999999952 4555554332110 0 012233345789999999999999998889
Q ss_pred CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
++|.|+|+|+... ...++...+++|+.|+.+++++|++.+++++||+||+++||+. ...+.+|++ +..|.++|
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~--~~~~~~E~~--~~~p~~~Y 151 (322)
T d1r6da_ 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSI--DSGSWTESS--PLEPNSPY 151 (322)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCC--SSSCBCTTS--CCCCCSHH
T ss_pred ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCC--CCCCCCCCC--CCCCCCHH
Confidence 9999999998543 3456778899999999999999999999999999999999643 345788988 56889999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al 238 (467)
+.+|..+|.+++.++++++++++++||+++|||++. .+++.++.++.+|+++.++|+|++.++|+|++|+|+++..++
T Consensus 152 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~ 231 (322)
T d1r6da_ 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHH
Confidence 999999999999999888999999999999999875 478999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHH
Q 012270 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (467)
Q Consensus 239 ~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 318 (467)
++ ...|++||+++++++++.|+++.+.+.+|.+.+.+.... ..+.
T Consensus 232 ~~------~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~----------------------~~~~------- 276 (322)
T d1r6da_ 232 AG------GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA----------------------DRKG------- 276 (322)
T ss_dssp HH------CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEEC----------------------CCTT-------
T ss_pred hC------CCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecC----------------------CCCC-------
Confidence 83 345789999999999999999999999998754322110 1110
Q ss_pred HhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 319 ~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
......+|++|+++.|||+|+++++|+|+++++|++++..
T Consensus 277 -~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~n~~ 316 (322)
T d1r6da_ 277 -HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316 (322)
T ss_dssp -CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCHH
T ss_pred -CCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 0123457999999999999999999999999999998654
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-47 Score=376.08 Aligned_cols=329 Identities=15% Similarity=0.089 Sum_probs=239.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
|++||||||||||++|+++|+++| ++|++++|..+.........-........++++++++|++|.+++.+++++ +|
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 689999999999999999999999 599999996542110000000001123356899999999999999999985 59
Q ss_pred EEEEcccC---CCCCCChhhHHHhhHHHHHHHHHHHHhCCC---CeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 87 TVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 87 ~Vih~aa~---~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v---~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
+|||+|+. ..+..++..++++|+.||.||+++|++.++ +||||+||++|||. ....+++|++ +..|.++|
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~--~~~~~~~E~~--~~~P~~~Y 156 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGL--VQEIPQKETT--PFYPRSPY 156 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTT--CCSSSBCTTS--CCCCCSHH
T ss_pred EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCC--CCCCCcCCCC--CCCCCChH
Confidence 99999994 346688899999999999999999999865 47999999999964 3345789998 45788999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCC-CceEEecCCCccccccchhHHHHHH
Q 012270 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPG-WTKFIIGSGENMSDFTYVENVAHAH 234 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-----~~~~~~~~~~~g-~~~~~~g~g~~~~~~i~v~Dva~a~ 234 (467)
+.+|..+|++++.++++++++++++||+++|||+... .+...+..+..+ ......|++++.++|+||+|+|+++
T Consensus 157 ~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~ 236 (357)
T d1db3a_ 157 AVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQ 236 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHH
Confidence 9999999999999998889999999999999997532 233334444444 4456779999999999999999999
Q ss_pred HHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchH
Q 012270 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSAC 314 (467)
Q Consensus 235 ~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 314 (467)
+.+++ . ..++.||+++++++|+.|+++.+.+.+|...+....+.... .......+...+...+
T Consensus 237 ~~~~~-----~--~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 299 (357)
T d1db3a_ 237 WMMLQ-----Q--EQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEK----------GIVVSVTGHDAPGVKP 299 (357)
T ss_dssp HHTTS-----S--SSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCE----------EEEEEECSSSCTTCCT
T ss_pred HHHHh-----C--CCCCeEEECCCCceehHHHHHHHHHHhCCcccccccccccc----------chhhhhhccccccccc
Confidence 99886 2 34679999999999999999999999986543211111000 0000000001111111
Q ss_pred HHH---------HH-hccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 315 YIV---------QL-ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 315 ~~~---------~~-~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
... +. ......+|++|++++|||+|+++++|+|+++++++.+..+
T Consensus 300 ~~~~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~k 354 (357)
T d1db3a_ 300 GDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354 (357)
T ss_dssp TCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CceeEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 000 00 0112346999999999999999999999999988766543
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=7.7e-48 Score=381.40 Aligned_cols=315 Identities=22% Similarity=0.235 Sum_probs=248.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
|+|||||||||||++|+++|+++|++.|.++++..... .. . .+.+....++++++.+|++|++.+.+++++ +|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~-~~-~---~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAG-NL-E---SLSDISESNRYNFEHADICDSAEITRIFEQYQPD 75 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTC-CG-G---GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccc-cH-H---HHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCC
Confidence 68999999999999999999999975567777644311 00 0 133444567899999999999999999874 89
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCC---------CCeEEEEcCccccccCCCCCC--------CC
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECK---------VRRLVYNSTADVVFDGSHDIH--------NG 146 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~---------v~r~v~~SS~~vyg~~~~~~~--------~~ 146 (467)
+|||+||... +..++..++++|+.|+.+++++|++.+ ++||||+||..|||+...... ..
T Consensus 76 ~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (361)
T d1kewa_ 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF 155 (361)
T ss_dssp EEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred EEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCc
Confidence 9999999543 345778899999999999999998864 459999999999976542211 11
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
.|+. +..|.+.|+.+|.++|++++.++++++++++++||+++|||++. .+++.++..+.+|+++.++|+|++.++|
T Consensus 156 ~e~~--~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~ 233 (361)
T d1kewa_ 156 TETT--AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (361)
T ss_dssp CTTS--CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEE
T ss_pred ccCC--CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeEEeC
Confidence 2333 45788999999999999999999888999999999999999864 4789999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcc
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 304 (467)
+||+|+|+++..+++. ...|++|||++++++++.|+++.+.+.++...+...-.... ..
T Consensus 234 i~v~D~a~ai~~~~~~------~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~- 292 (361)
T d1kewa_ 234 LYVEDHARALHMVVTE------GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQ--------------IT- 292 (361)
T ss_dssp EEHHHHHHHHHHHHHH------CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGG--------------EE-
T ss_pred EEHHHHHHHHHHHHhc------CCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccc--------------ee-
Confidence 9999999999999983 34577999999999999999999998876543221100000 00
Q ss_pred cccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.....| . ....+..|++|++++|||+|+++++|+|++|++||+++..
T Consensus 293 ~~~~~~----~----~~~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 293 YVADRP----G----HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp EECCCT----T----CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred ecCCCC----C----CCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 000111 0 1123567999999999999999999999999999988744
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-48 Score=373.97 Aligned_cols=299 Identities=21% Similarity=0.239 Sum_probs=240.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
.||||||||+||||++|+++|+++| ++|++++|..+.... .+.......+++....|+.+ .++.++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~------~~~~~~~~~~~d~~~~~~~~-----~~~~~~d~ 68 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKR------NVEHWIGHENFELINHDVVE-----PLYIEVDQ 68 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGG------GTGGGTTCTTEEEEECCTTS-----CCCCCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCcCCHH------HHHHhcCCCceEEEehHHHH-----HHHcCCCE
Confidence 4799999999999999999999999 599999875431111 12222334456666666644 34567999
Q ss_pred EEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc---CCCCCChHH
Q 012270 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC---CWKFQDLMC 161 (467)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~---~~~~~~~Y~ 161 (467)
|||+|+... +..++...+++|+.|+.||+++|++.++ |+||+||++|||... ..+.+|+... |..|.++|+
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~--~~~~~e~~~~~~~~~~p~~~Y~ 145 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPE--VHPQSEDYWGHVNPIGPRACYD 145 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCS--SSSBCTTCCCBCCSSSTTHHHH
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCC--CCCCCccccCCCCCCCCccHHH
Confidence 999999433 4567888999999999999999999987 899999999997543 2344544321 457889999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHH
Q 012270 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~----~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
.+|.++|.+++.+++.+|++++++||+++|||++. .+++.++..+..|+++.++|+|.+.++|+|++|+|++++.+
T Consensus 146 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~ 225 (312)
T d2b69a1 146 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL 225 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHH
Confidence 99999999999998888999999999999999754 36788999999999999999999999999999999999988
Q ss_pred HHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 012270 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 317 (467)
++ .. .++.||+++++.+++.|+++.+++.+|.+.+....|... ..+
T Consensus 226 ~~------~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------------~~~------- 271 (312)
T d2b69a1 226 MN------SN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ--------------------DDP------- 271 (312)
T ss_dssp HT------SS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT--------------------TCC-------
T ss_pred Hh------hc-cCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCCC--------------------CCC-------
Confidence 86 23 456899999999999999999999999886654333110 000
Q ss_pred HHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 318 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
.....|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 272 ----~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 272 ----QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp ----CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ----CeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 12456999999999999999999999999999988654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-45 Score=365.94 Aligned_cols=301 Identities=19% Similarity=0.164 Sum_probs=247.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++.|||||||||||||++|+++|+++|| +|+++|+....... ......++..+|++|.+++.++++++
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMT-----------EDMFCDEFHLVDLRVMENCLKVTEGV 80 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSC-----------GGGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccchh-----------hhcccCcEEEeechhHHHHHHHhhcC
Confidence 4678999999999999999999999995 99999986552111 11245688899999999999999999
Q ss_pred CEEEEcccCCCC----CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCC-----cccCCCC
Q 012270 86 STVFYVDATDLN----TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET-----LTCCWKF 156 (467)
Q Consensus 86 D~Vih~aa~~~~----~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~-----~p~~~~~ 156 (467)
|+|||+|+.... ..++......|+.++.+++++|++.+++|+||+||..+|+.... .+.+|. ...+..|
T Consensus 81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~--~~~~~~~~~~~e~~~~~p 158 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQ--LETTNVSLKESDAWPAEP 158 (363)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGS--SSSSSCEECGGGGSSBCC
T ss_pred CeEeecccccccccccccccccccccccchhhHHHHhHHhhCcccccccccccccccccc--ccccccccccccCCcCCC
Confidence 999999985443 56788899999999999999999999999999999999975432 222221 1125678
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-------cHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
.++|+.+|.++|++++.+.+++|++++++||+++|||++.. .................+|+|.+.++|+|++|
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 99999999999999999988889999999999999997642 22334445566677789999999999999999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCC
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (467)
+|+++..+++ . ..+++||+++++.+|+.|+++.+.+.+|.+.+...+|.
T Consensus 239 ~~~~~~~~~~------~-~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~------------------------ 287 (363)
T d2c5aa1 239 CVEGVLRLTK------S-DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG------------------------ 287 (363)
T ss_dssp HHHHHHHHHH------S-SCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC------------------------
T ss_pred HHHHHHHHHh------C-CCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC------------------------
Confidence 9999999887 2 24679999999999999999999999998876554432
Q ss_pred CCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 310 p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
|.. .....+|++|++++|||+|+++++|+|++|++||+++..
T Consensus 288 ~~~--------~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 288 PEG--------VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp CCC--------CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCC--------ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 100 123567999999999999999999999999999988754
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.8e-47 Score=372.25 Aligned_cols=317 Identities=21% Similarity=0.216 Sum_probs=254.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|+|||||||||||++|+++|+++|+ +|+++||.....................++++++.+|..|...+.....+.+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 568999999999999999999999995 9999997443110000000001111223578999999999999999999999
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|+|+++... +..++...+++|+.|+.+++++|++.+++++||+||++|||.. +..+.+|++ +.+|.+.|+.+
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~--~~~~~~E~~--~~~p~~~Y~~s 169 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDH--PGLPKVEDT--IGKPLSPYAVT 169 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTC--CCSSBCTTC--CCCCCSHHHHH
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCC--CCCCccCCC--CCCCCCcchHH
Confidence 9999998543 4577888999999999999999999999999999999999643 445789988 56889999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHH
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~a 237 (467)
|.++|++++.++++.+++++++||+++|||+.. .+++.++..+..|+++.++|+|.+.++|+||+|+|.++..+
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~ 249 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLA 249 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhh
Confidence 999999999998888999999999999999753 36778888899999999999999999999999999999998
Q ss_pred HHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHH
Q 012270 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (467)
Q Consensus 238 l~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 317 (467)
+.. .....++.||+++++..|+.|+++.+.+.++.+.......... . ..+ +.
T Consensus 250 ~~~----~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~------------------~-~~~---~~-- 301 (341)
T d1sb8a_ 250 ATA----GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVY------------------R-DFR---EG-- 301 (341)
T ss_dssp HTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEE------------------E-CCC---TT--
T ss_pred hhc----cccccceeeeecccccchHHHHHHHHHHHhccccccccccccc------------------c-CCC---CC--
Confidence 863 2345678999999999999999999999988654222111000 0 000 00
Q ss_pred HHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 318 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
.......|++|+++.|||+|+++++|+|+++++||++..
T Consensus 302 --~~~~~~~d~~k~~~~LGw~p~~sl~~gi~~ti~wy~~~~ 340 (341)
T d1sb8a_ 302 --DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 340 (341)
T ss_dssp --CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred --CcCeeeeCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHhc
Confidence 011245699999999999999999999999999999853
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-45 Score=362.16 Aligned_cols=310 Identities=18% Similarity=0.191 Sum_probs=243.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|||||||||||||++|++.|+++| ++|+++||.......... ..+.....+++++++|++|.+.+.++++ ++|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLP----VIERLGGKHPTFVEGDIRNEALMTEILHDHAID 75 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHH----HHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHH----HHHhhcCCCCEEEEeecCCHHHHHHHHhccCCC
Confidence 689999999999999999999999 599999985542111000 0011224589999999999999999998 799
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+||... +..++..++++|+.||.|++++|++.+++++||+||.++|+.... .+..|..+ +..|.++|+.+
T Consensus 76 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~--~~~~e~~~-~~~p~~~Y~~s 152 (338)
T d1udca_ 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPK--IPYVESFP-TGTPQSPYGKS 152 (338)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCS--SSBCTTSC-CCCCSSHHHHH
T ss_pred EEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccc--cccccccc-cCCCcchHHHH
Confidence 9999999543 345788999999999999999999999999999999999964432 23344433 45789999999
Q ss_pred HHHHHHHHHhhcC-CCCceEEEEeCCCcccCCCC------------CcHHHHHHHhcC-CCceEEecC------CCcccc
Q 012270 164 KAQAEALVLFANN-IDGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKP-GWTKFIIGS------GENMSD 223 (467)
Q Consensus 164 K~~~E~~v~~~~~-~~g~~~~ilRp~~i~G~~~~------------~~~~~~~~~~~~-g~~~~~~g~------g~~~~~ 223 (467)
|..+|+++.++.. ..+++++++||+++|||++. .+++.++..+.. +.++.+.|+ +++.+|
T Consensus 153 K~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd 232 (338)
T d1udca_ 153 KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232 (338)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEEC
T ss_pred HhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceee
Confidence 9999999986554 35899999999999998643 255666666554 346666664 678899
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhc
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 303 (467)
|+|++|++.++..+...+. ....+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 233 ~i~v~D~~~~~~~~~~~~~---~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~----------------- 292 (338)
T d1udca_ 233 YIHVMDLADGHVVAMEKLA---NKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR----------------- 292 (338)
T ss_dssp EEEHHHHHHHHHHHHHHHT---TCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCC-----------------
T ss_pred EEEEeehhhhccccccccc---cccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCC-----------------
Confidence 9999999999988877542 33456799999999999999999999999987655433311
Q ss_pred ccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 304 ~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
+ .. .....+|++|++++|||+|+++++|+|++|++|++++...
T Consensus 293 ------~----~~----~~~~~~d~~k~~~~lgwkp~~~l~egi~~ti~w~~~~~~~ 335 (338)
T d1udca_ 293 ------E----GD----LPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp ------T----TC----CSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ------C----CC----CCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhchhh
Confidence 1 00 1234579999999999999999999999999999997543
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-46 Score=364.56 Aligned_cols=318 Identities=17% Similarity=0.150 Sum_probs=246.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH-HHhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK-VLEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~D~ 87 (467)
|||||||||||||++|+++|+++||++|+++|+.... ..+....++++++.+|++|.+++.+ +.+++|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----------~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----------ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----------GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc----------hhhhccCCCeEEEECccCChHHHHHHHHhCCCc
Confidence 6899999999999999999999997799999886541 2223345789999999998766554 6778999
Q ss_pred EEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcc-----cCCCCCCh
Q 012270 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT-----CCWKFQDL 159 (467)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p-----~~~~~~~~ 159 (467)
|||+|+... ...++...+++|+.|+.+++++|.+.++ +.+|+||+.+|+..... ..+|..+ ....|.+.
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~ 147 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDK--YFDEDHSNLIVGPVNKPRWI 147 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCS--SBCTTTCCCBCCCTTCGGGH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc-ccccccccccccccccc--ccccccccccccccCCCcch
Confidence 999999543 3456678899999999999999999987 67899999999754332 2222211 13456789
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC----------cHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 160 Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~----------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
|+.+|..+|++++.+++++|++++++||+.+|||+... .++.++..+..|+++.++|+|++.++|+|++|
T Consensus 148 Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D 227 (342)
T d2blla1 148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHH
T ss_pred hhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeeccccc
Confidence 99999999999999998889999999999999996432 46678888889999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCCC-CcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccC
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~~-~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 308 (467)
+|+++..++++. .....|++||+++++ ++|+.|+++.+.+.+|.......+|....... ..
T Consensus 228 ~~~a~~~~~~~~---~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~ 289 (342)
T d2blla1 228 GIEALYRIIENA---GNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV---------------VE 289 (342)
T ss_dssp HHHHHHHHHHCG---GGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEE---------------C-
T ss_pred ccceeeeehhhc---cccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccce---------------ec
Confidence 999999999842 134568899998875 58999999999999998766555543210000 00
Q ss_pred CCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 309 ~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
...+....... ......|++|++++|||+|+++++|+|+++++||+++.
T Consensus 290 ~~~~~~~~~~~-~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~ 338 (342)
T d2blla1 290 SSSYYGKGYQD-VEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338 (342)
T ss_dssp ------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred ccccccccccc-ccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCc
Confidence 00000000000 12235699999999999999999999999999998864
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=3e-45 Score=360.71 Aligned_cols=308 Identities=18% Similarity=0.197 Sum_probs=245.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+||+|||||||||||++|+++|+++|+. .|+++|+..... ... ..+.....+++++.+|++|.+.+..++.++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~---~~~---~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~ 74 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG---NKA---NLEAILGDRVELVVGDIADAELVDKLAAKA 74 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC---CGG---GTGGGCSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccc---cHH---HHHHhhcCCeEEEEccCCCHHHHHHHHhhh
Confidence 4899999999999999999999999952 344444322100 000 112234578999999999999999999999
Q ss_pred CEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCC----------CCCCCCCCCccc
Q 012270 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGS----------HDIHNGDETLTC 152 (467)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~----------~~~~~~~E~~p~ 152 (467)
|.|+|+|+... +..++...+++|+.|+.|++++|+..+. ++|++||.++||... ......+|++
T Consensus 75 ~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~-- 151 (346)
T d1oc2a_ 75 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET-- 151 (346)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS--
T ss_pred hhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCC--
Confidence 99999998543 3467888999999999999999999986 899999999997431 1112334444
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
+..|.+.|+.+|.++|++++.++++++++++++||+++|||+.. ..+..++.....+.++.++|++++.++|+|++|+
T Consensus 152 ~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~ 231 (346)
T d1oc2a_ 152 NYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDH 231 (346)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccchhhH
Confidence 55788999999999999999998888999999999999999753 5677777777888888999999999999999999
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCC
Q 012270 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHS 310 (467)
Q Consensus 231 a~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p 310 (467)
|++++.+++ ....++.||+++++..++.|+++.+.+.++.+...+.... ..|
T Consensus 232 a~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~ 283 (346)
T d1oc2a_ 232 STGVWAILT------KGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT----------------------DRA 283 (346)
T ss_dssp HHHHHHHHH------HCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC----------------------CCT
T ss_pred HHHHHHHHh------hcccCccccccccccccchHHHHHHHHHhCCCCcceEECC----------------------CCC
Confidence 999999887 3455679999999999999999999999998654322110 111
Q ss_pred CchHHHHHHhccceEeehhhHhhhCCCcccc-ChHHHHHHHHHHHHHhhh
Q 012270 311 LSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 311 ~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~i~~~i~~~~~~~~ 359 (467)
.. ...+..|++|++++|||+|++ +++|+|+++++||+++..
T Consensus 284 ~~--------~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 284 GH--------DLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp TC--------CCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred CC--------CceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 00 112447999999999999987 699999999999998754
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-43 Score=344.40 Aligned_cols=306 Identities=16% Similarity=0.093 Sum_probs=240.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
|+|||||||||||++|+++|+++| |+|++++|..+..... .+......++++++.+|++|.+.+.+.+.. .+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~~~~~~-----~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 74 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRW-----RLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 74 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCH-----HHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcccHH-----HHHHhcccCCcEEEEccccChHHhhhhhcccccc
Confidence 689999999999999999999999 5999999976521100 011223346799999999999999988775 67
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCC-CeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v-~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~ 162 (467)
+++|+|+... ...++..+++.|+.|+.+++++|++.++ ++++++||..+||. ....+.+|++ +..|.+.|+.
T Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~--~~~~~~~E~~--~~~p~~~Y~~ 150 (321)
T d1rpna_ 75 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGL--IQAERQDENT--PFYPRSPYGV 150 (321)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCS--CSSSSBCTTS--CCCCCSHHHH
T ss_pred ccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCc--ccCCCCCCCC--CccccChhHH
Confidence 8888887433 4466788999999999999999999985 47888888888843 3445678887 5588999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--C---cHHHHHHH-hcCCCceEEecCCCccccccchhHHHHHHHH
Q 012270 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--Q---LVPLLVNL-AKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 163 sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~--~---~~~~~~~~-~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
+|.++|++++.++++++++++++||+++|||... . .+..++.+ ...+.+....|+|++.++|+|++|+|++++.
T Consensus 151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~ 230 (321)
T d1rpna_ 151 AKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 230 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHH
Confidence 9999999999999888999999999999999643 2 22233333 4445555678999999999999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCC-ccCChHHHHHHHHHHHHHHHHhcccccCCCCchHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~-~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 315 (467)
++++ + .++.||+++++..++.++++.+.+.+|.+.+. ..++... ..| .
T Consensus 231 ~~~~-----~--~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~rp----~ 279 (321)
T d1rpna_ 231 MLQQ-----D--KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAF--------------------FRP----A 279 (321)
T ss_dssp HHHS-----S--SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGG--------------------CCS----S
T ss_pred HHhc-----C--CcCCceecccccceehhhhHHHHHHhCCCccceeecCCCC--------------------CCC----C
Confidence 9982 2 34689999999999999999999999876432 2222110 001 0
Q ss_pred HHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 316 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
. ...+..|++|++++|||+|+++++|+|++|++|+.++.+
T Consensus 280 ~----~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l~~~~ 319 (321)
T d1rpna_ 280 E----VDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVS 319 (321)
T ss_dssp C----CCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred c----cCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHhc
Confidence 0 123456999999999999999999999999999877543
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-43 Score=344.24 Aligned_cols=314 Identities=16% Similarity=0.175 Sum_probs=238.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|.|||||||||||++|+++|+++|+ +|+++++.......... ..+.....+++++.+|++|.+++.+++. ++|
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~----~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 76 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVA----RLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKID 76 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHH----HHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHH----hHHhhcccCCeEEEeecCCHHHHHHHHhccCCC
Confidence 4699999999999999999999994 99999875431110000 0111234678999999999999999887 799
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCC--CCCCCCCCcccCCCCCChHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--DIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~--~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|||+||... ...++..+..+|+.|+.+++++|++.+++|+||+||.+|||.... ...+.+|+. +..|.++|+
T Consensus 77 ~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~--~~~p~~~Y~ 154 (347)
T d1z45a2 77 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPTNPYG 154 (347)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCCSHHH
T ss_pred EEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCcccccc--CCCCCChhH
Confidence 9999999543 445678899999999999999999999999999999999986543 234567766 557889999
Q ss_pred HHHHHHHHHHHhhc--CCCCceEEEEeCCCcccCCCC------------CcHHHHHHHhc-CCCceEEecCCC------c
Q 012270 162 DLKAQAEALVLFAN--NIDGLLTCALRPSNVFGPGDT------------QLVPLLVNLAK-PGWTKFIIGSGE------N 220 (467)
Q Consensus 162 ~sK~~~E~~v~~~~--~~~g~~~~ilRp~~i~G~~~~------------~~~~~~~~~~~-~g~~~~~~g~g~------~ 220 (467)
.+|.++|++++.+. ...+++++++||+++||++.. .+++.+...+. .+.++.++|++. .
T Consensus 155 ~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~ 234 (347)
T d1z45a2 155 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTP 234 (347)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSC
T ss_pred hHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCce
Confidence 99999999999875 346899999999999997542 24555555544 345566666654 4
Q ss_pred cccccchhHHHHHHHHHHHHhccc-cccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHH
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSR-MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~-~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~ 299 (467)
.+|++++.|.+.+++.+++.+... .....+++||+++++++|+.|+++.+.+.+|.+.+....+..
T Consensus 235 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~------------- 301 (347)
T d1z45a2 235 IRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR------------- 301 (347)
T ss_dssp EECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC-------------------
T ss_pred eeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCC-------------
Confidence 567788888889999888765332 223446799999999999999999999999987654322210
Q ss_pred HHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
+ .. ......|++|++++|||+|+++++|+|++|++|++++...
T Consensus 302 ----------~----~~----~~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np~~ 344 (347)
T d1z45a2 302 ----------A----GD----VLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 344 (347)
T ss_dssp ---------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ----------C----CC----CCEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhChhc
Confidence 0 00 1134579999999999999999999999999999998544
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-42 Score=341.49 Aligned_cols=314 Identities=15% Similarity=0.186 Sum_probs=240.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCC--CcCCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
.+||||||||||||++|+++|+++| ++|+++|+................ +.....+++++++|++|.+++.+++.+
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccc
Confidence 4699999999999999999999999 599999874432111111000000 112346899999999999999998876
Q ss_pred -CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChH
Q 012270 85 -ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (467)
Q Consensus 85 -~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y 160 (467)
+++|+|+||... +..+|...+++|+.|+.+++++|++.++++++|+||..+||........ .+.. ...+.++|
T Consensus 81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~-~~~~--~~~~~~~Y 157 (346)
T d1ek6a_ 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLD-EAHP--TGGCTNPY 157 (346)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBC-TTSC--CCCCSSHH
T ss_pred ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeecccccccc-cccc--ccccCChH
Confidence 457999999543 3456888999999999999999999999999999999999765433221 1211 34667899
Q ss_pred HHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCC------------CcHHHHHHH-hcCCCceEEec------CCCc
Q 012270 161 CDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNL-AKPGWTKFIIG------SGEN 220 (467)
Q Consensus 161 ~~sK~~~E~~v~~~~~~-~g~~~~ilRp~~i~G~~~~------------~~~~~~~~~-~~~g~~~~~~g------~g~~ 220 (467)
+.+|..+|+.++++++. .+++.+++||+.+|||+.. .+++.+... ..++.++.+.| ++.+
T Consensus 158 ~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~ 237 (346)
T d1ek6a_ 158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCe
Confidence 99999999999987653 5899999999999998643 245555544 33555556655 4667
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHH
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~ 300 (467)
.+||+|++|+|.++..+++.. .....+++||+++++.+++.|+++.+.+.+|.+.+....|..
T Consensus 238 ~Rdfi~v~D~a~~~~~~~~~~---~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~-------------- 300 (346)
T d1ek6a_ 238 VRDYIHVVDLAKGHIAALRKL---KEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR-------------- 300 (346)
T ss_dssp EECEEEHHHHHHHHHHHHHHH---TTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC--------------
T ss_pred eEeEEEEEeccchhhhhcccc---ccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCC--------------
Confidence 889999999999999887643 234566899999999999999999999999988765444321
Q ss_pred HhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhh
Q 012270 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (467)
Q Consensus 301 ~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~ 359 (467)
| .. ......|++|++++|||+|+++++|+|+++++|++++..
T Consensus 301 ---------~----~e----~~~~~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 301 ---------E----GD----VAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp ---------T----TC----CSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred ---------C----CC----CCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHh
Confidence 1 00 112456999999999999999999999999999998654
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-42 Score=341.20 Aligned_cols=327 Identities=16% Similarity=0.088 Sum_probs=239.4
Q ss_pred CEE-EEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC-CcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 9 RTC-VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 9 ~~i-lVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
|+| ||||||||||++|+++|+++| ++|++++|..+..... .+............+++++.+|++|++.+..++.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 567 999999999999999999999 5999999976421110 00000001112235789999999999999999864
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCC---CeEEEEcCccccccCCCCCCCCCCCcccCCCCCC
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v---~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~ 158 (467)
+++|+|+++... +..++...+++|+.||.+++++|+++++ ++|||+||++|||+ ....+.+|++ +..|.+
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~--~~~~~~~E~~--~~~P~~ 155 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGK--VQEIPQKETT--PFYPRS 155 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCS--CSSSSBCTTS--CCCCCS
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecC--CCCCCCCCCC--CCCCCC
Confidence 789999998543 3456777889999999999999999865 48999999999964 3445789998 557899
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEecCCCccccccchhHHHH
Q 012270 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~------~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
+|+.+|.++|++++.++++++++++++||+++|||+... ....+......+.+...+|++++.++|+|++|+|+
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~ 235 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHH
Confidence 999999999999999988889999999999999996542 22334555566777788999999999999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCc
Q 012270 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (467)
Q Consensus 233 a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 312 (467)
++..+++. . ..+.|+++.....++.+..+.+...++........+...+ ......+......
T Consensus 236 a~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 297 (347)
T d1t2aa_ 236 AMWLMLQN-----D--EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEV-----------GRCKETGKVHVTV 297 (347)
T ss_dssp HHHHHHHS-----S--SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCE-----------EEETTTCCEEEEE
T ss_pred HHHHHhhc-----C--CCccceeccccccccchhhhhhhhhhcceeeecccchhhh-----------hhhhhcCCceeee
Confidence 99999982 2 2357999999999999999999999987643222111000 0000000000000
Q ss_pred hHHHHHH-hccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhh
Q 012270 313 ACYIVQL-ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (467)
Q Consensus 313 ~~~~~~~-~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~ 358 (467)
....... ....+.+|++|++++|||+|+++++|+|++|+++..+..
T Consensus 298 ~~~~~rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~ 344 (347)
T d1t2aa_ 298 DLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 344 (347)
T ss_dssp CGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHH
Confidence 0000000 012345699999999999999999999999998865543
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.7e-42 Score=331.22 Aligned_cols=290 Identities=17% Similarity=0.172 Sum_probs=230.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
.|||||||||||||++|+++|+++|+ .|+++++... .|+.|.+.+.++++ ++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRTRDE-------------------------LNLLDSRAVHDFFASERI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCCTTT-------------------------CCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecCchh-------------------------ccccCHHHHHHHHhhcCC
Confidence 46999999999999999999999995 7777655332 58999999998876 48
Q ss_pred CEEEEcccCCC----CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccC---CCCCC
Q 012270 86 STVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC---WKFQD 158 (467)
Q Consensus 86 D~Vih~aa~~~----~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~---~~~~~ 158 (467)
|.|+|+|+... ...++...+++|+.||.+++++|++.+++||||+||.+|||.. ...+.+|+.+.. ..+.+
T Consensus 56 d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~--~~~~~~E~~~~~~~~~~~~~ 133 (315)
T d1e6ua_ 56 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKL--AKQPMAESELLQGTLEPTNE 133 (315)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTT--CCSSBCGGGTTSSCCCGGGH
T ss_pred CEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCC--CCCCccCCccccCCCCCCCC
Confidence 99999997433 2355677889999999999999999999999999999999643 334677776542 23346
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cH-----HHHHHHhcCCCceEEecCCCccccccch
Q 012270 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LV-----PLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 159 ~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~------~~-----~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+|+.+|.++|+.++.+++++|++++++||++||||+++. .. .........+..+.+.|++.+.++|+|+
T Consensus 134 ~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v 213 (315)
T d1e6ua_ 134 PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEe
Confidence 799999999999999998889999999999999997642 11 2234556678888999999999999999
Q ss_pred hHHHHHHHHHHHHhccc---cccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcc
Q 012270 228 ENVAHAHVCAAEALDSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~---~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 304 (467)
+|++.++..++++.... ........++++.+.+.++.++++.+.+.+|.+......|
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~-------------------- 273 (315)
T d1e6ua_ 214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA-------------------- 273 (315)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEET--------------------
T ss_pred ehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECC--------------------
Confidence 99999999998743211 1223456899999999999999999999999875432221
Q ss_pred cccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHh
Q 012270 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (467)
Q Consensus 305 ~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~ 357 (467)
..|.- .....+|++|+++ |||+|+++++|+|+++++||+++
T Consensus 274 ---~~~~~--------~~~~~~d~sk~k~-Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 274 ---SKPDG--------TPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp ---TSCCC--------CSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred ---CCCCC--------CceeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 11100 1124579999975 99999999999999999999875
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1.8e-41 Score=338.22 Aligned_cols=317 Identities=18% Similarity=0.142 Sum_probs=238.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCC--cC----------CCCCCCcCCCCCeEEEEecCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPS--ES----------NSLLPDSLSSGRAEYHQVDVRD 74 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~--~~----------~~~~~~~~~~~~v~~~~~Dl~d 74 (467)
.|||||||||||||++|+++|+++ | ++|+++|+-........ +. ...........++.++.+|++|
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 479999999999999999999974 6 69999985222110000 00 0001112234568899999999
Q ss_pred HHHHHHHHh---CCCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCC-----
Q 012270 75 ISQIKKVLE---GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDI----- 143 (467)
Q Consensus 75 ~~~l~~~~~---~~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~----- 143 (467)
.+.+.++++ ++|+|||+|+... ...++....++|+.++.+++++|++.++++++++||.++|+......
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence 999999886 5799999999543 33556778999999999999999999999999999999997543322
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----------cHHHHHHH-------
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----------LVPLLVNL------- 205 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-----------~~~~~~~~------- 205 (467)
.+..|+. +..|.++|+.+|..+|++++.+.+.+|++++++||+++|||++.. +++.++..
T Consensus 161 ~~~~e~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~ 238 (383)
T d1gy8a_ 161 EPIDINA--KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238 (383)
T ss_dssp CCBCTTS--CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSC
T ss_pred ccccccc--CCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccc
Confidence 2344444 567899999999999999999998889999999999999997642 23433332
Q ss_pred ---------hcCCCceEEec------CCCccccccchhHHHHHHHHHHHHhccc---cccCCCcEEEEcCCCCcCHHHHH
Q 012270 206 ---------AKPGWTKFIIG------SGENMSDFTYVENVAHAHVCAAEALDSR---MVSVAGMAFFITNLEPIKFWDFL 267 (467)
Q Consensus 206 ---------~~~g~~~~~~g------~g~~~~~~i~v~Dva~a~~~al~~~~~~---~~~~~g~~yni~~~~~~s~~el~ 267 (467)
+..+.++.+.| +|.+.+||+|++|+|++++.+++.+... .....+++||+++++++|+.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~ 318 (383)
T d1gy8a_ 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVI 318 (383)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHH
T ss_pred cccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHH
Confidence 22345555655 4788899999999999999999864322 12345679999999999999999
Q ss_pred HHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHH
Q 012270 268 SIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGV 347 (467)
Q Consensus 268 ~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i 347 (467)
+.+.+.+|.+.+....+.. + .. ......|++|++++|||+|+++++|+|
T Consensus 319 ~~i~~~~~~~~~~~~~~~~-----------------------~----~d----~~~~~~d~~k~~k~LGw~P~~~l~e~i 367 (383)
T d1gy8a_ 319 EVARKTTGHPIPVRECGRR-----------------------E----GD----PAYLVAASDKAREVLGWKPKYDTLEAI 367 (383)
T ss_dssp HHHHHHHCCCCCEEEECCC-----------------------T----TC----CSEECBCCHHHHHHTCCCCSCCSHHHH
T ss_pred HHHHHHhCCCCceEECCCC-----------------------C----CC----cCEeeeCHHHHHHHHCCccCCCHHHHH
Confidence 9999999988665433211 1 00 123456999999999999999999999
Q ss_pred HHH-HHHHHHhh
Q 012270 348 SST-IQSFSHLA 358 (467)
Q Consensus 348 ~~~-i~~~~~~~ 358 (467)
+++ +.|++.+.
T Consensus 368 ~~t~~~w~~~~~ 379 (383)
T d1gy8a_ 368 METSWKFQRTHP 379 (383)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhCc
Confidence 887 68888753
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.9e-41 Score=328.49 Aligned_cols=312 Identities=15% Similarity=0.140 Sum_probs=236.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCcc-CCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--C
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~ 84 (467)
.|++||||||||||+||+++|+++| ++|++++|..+.. ..................++++.+|+++.+++.+.++ +
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~ 79 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 79 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence 3789999999999999999999999 5999999965411 1110110001111234568899999999999998886 5
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccCCCCCCCCCCCcccCCCC
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~ 156 (467)
+|+|||+|+... +..++...++.|+.++.++++++++. ...++++.||..+|+... .+.+|++ +..|
T Consensus 80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~---~~~~E~~--~~~p 154 (339)
T d1n7ha_ 80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP---PPQSETT--PFHP 154 (339)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC---SSBCTTS--CCCC
T ss_pred cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC---CCCCCCC--CCCC
Confidence 899999999544 33678889999999999999999865 345788888888875432 3578887 5689
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HH-HHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VP-LLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 157 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~-~----~~-~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
.+.|+.+|..+|+++..++++++++++++||+++|||+... . +. .+........+..+.|++.+.+||+|++|+
T Consensus 155 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~ 234 (339)
T d1n7ha_ 155 RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDY 234 (339)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehH
Confidence 99999999999999999998889999999999999997542 2 22 222334455566788999999999999999
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCC-ccCChHHHHHHHHHHHHHHHHhcccccCC
Q 012270 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (467)
Q Consensus 231 a~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~-~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (467)
|+++..+++ .. .+..+++..+...+..++++.+.+.+|..... +.+.... ..
T Consensus 235 a~~~~~~~~------~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~r 287 (339)
T d1n7ha_ 235 VEAMWLMLQ------QE-KPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRY--------------------FR 287 (339)
T ss_dssp HHHHHHHHT------SS-SCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGG--------------------SC
T ss_pred HHHHHHHHh------cC-CCCccccccccccccchhhhhhhhhhhcccCceeeeccCC--------------------CC
Confidence 999999997 22 23467788889999999999999999976432 1111100 00
Q ss_pred CCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 310 p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
| .. ...+..|++|++++|||+|+++++|+|++|++|+.+..+.
T Consensus 288 ~----~~----~~~~~~d~~Kak~~LGw~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 288 P----AE----VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp S----SC----CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred C----CC----CCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 1 00 1124469999999999999999999999999999887654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=7.7e-41 Score=334.75 Aligned_cols=317 Identities=15% Similarity=0.118 Sum_probs=232.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC------------cCCCCCeEEEEecCCCH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD------------SLSSGRAEYHQVDVRDI 75 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~Dl~d~ 75 (467)
+|||||||||||||++|+++|+++| ++|+++|...............+.+ .....+++++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 5899999999999999999999999 5999997321100000000000000 01235789999999999
Q ss_pred HHHHHHHhC--CCEEEEcccCCC---CC---CChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCccccccCCCCCC--
Q 012270 76 SQIKKVLEG--ASTVFYVDATDL---NT---DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIH-- 144 (467)
Q Consensus 76 ~~l~~~~~~--~D~Vih~aa~~~---~~---~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~~vyg~~~~~~~-- 144 (467)
+.+.+++++ +|+|||+||... +. ..+..++++|+.||.|++++|++.+++ +++++||..+|+....+..
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~ 159 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEG 159 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccccc
Confidence 999999985 699999998432 22 234568899999999999999998765 6788888888753321110
Q ss_pred -------CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-------------------Cc
Q 012270 145 -------NGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------------------QL 198 (467)
Q Consensus 145 -------~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-------------------~~ 198 (467)
...|+.+.+..|.++|+.+|..+|.+++.++++++++++++||+++|||+.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 0112223466788899999999999999999888999999999999999753 13
Q ss_pred HHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEE-cCCCCcCHHHHHHHHHHHcCC-
Q 012270 199 VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI-TNLEPIKFWDFLSIILEGLGY- 276 (467)
Q Consensus 199 ~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni-~~~~~~s~~el~~~i~~~~g~- 276 (467)
++.++..+..|+++.++|++.+.+||+||+|+|+++..+++ .+...|+.+.+ .+++.+|+.|+++.+.+..+.
T Consensus 240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~-----~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~ 314 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA-----NPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKL 314 (393)
T ss_dssp HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH-----SCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTT
T ss_pred hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHH-----hhcccceeeeecCCCCeeEHHHHHHHHHHHHHhh
Confidence 67788888899999999999999999999999999999998 34555543332 344779999999999887543
Q ss_pred --CCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHH
Q 012270 277 --QRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (467)
Q Consensus 277 --~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~ 354 (467)
+......+ .|.... .......|++|+++ |||+|+++++++++++++|+
T Consensus 315 ~~~~~~~~~~------------------------~~~~~~-----~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~ 364 (393)
T d1i24a_ 315 GLDVKKMTVP------------------------NPRVEA-----EEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFA 364 (393)
T ss_dssp TCCCCEEEEC------------------------CSSCSC-----SSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHH
T ss_pred CCCcceeecc------------------------CCCCCC-----CccEecCCHHHHHH-cCCccccCHHHHHHHHHHHH
Confidence 32222221 110000 01234568899986 99999999999999999999
Q ss_pred HHhhhc
Q 012270 355 SHLARD 360 (467)
Q Consensus 355 ~~~~~~ 360 (467)
+++...
T Consensus 365 ~~~k~~ 370 (393)
T d1i24a_ 365 VQFKDR 370 (393)
T ss_dssp HHTGGG
T ss_pred HHHHHh
Confidence 887654
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.7e-40 Score=324.53 Aligned_cols=304 Identities=21% Similarity=0.245 Sum_probs=235.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CCE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AST 87 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D~ 87 (467)
||||||||||||++|+++|+++| ++|+++|+-..... .. .+......++++++.+|++|.+.+.+++++ +|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~---~~--~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGA---TD--NLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTH---HH--HHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccc---hh--HHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCce
Confidence 79999999999999999999999 59999986332100 00 011112346899999999999999999986 699
Q ss_pred EEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCC---------------CCCCC
Q 012270 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIH---------------NGDET 149 (467)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~---------------~~~E~ 149 (467)
|||+|+... ...++...+++|+.||.||+++|++.+++++|+.||.++++....... ..++.
T Consensus 76 Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T d1orra_ 76 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDES 155 (338)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTT
T ss_pred EEeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccC
Confidence 999999554 335778999999999999999999999988877777766654332111 01111
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----CcHHHHHHHh-----cCCCceEEecCCC
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----QLVPLLVNLA-----KPGWTKFIIGSGE 219 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~-----~~~~~~~~~~-----~~g~~~~~~g~g~ 219 (467)
. +..|.+.|+.+|...|.++..+.+.++...+++|++.+||+... ..++.++..+ ..++++.++|+|+
T Consensus 156 ~--~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 233 (338)
T d1orra_ 156 T--QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGK 233 (338)
T ss_dssp S--CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSC
T ss_pred C--ccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCc
Confidence 1 44677899999999999999988888999999999999987543 2445554433 2477889999999
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC--CCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHH
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~--~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~ 297 (467)
+.++|+|++|+|++++.+++. .....|++||+..+ ..+++.|+++.+.+.+|.+.+...+|..
T Consensus 234 ~~r~~~~v~D~~~~~~~~l~~----~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~----------- 298 (338)
T d1orra_ 234 QVRDVLHAEDMISLYFTALAN----VSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR----------- 298 (338)
T ss_dssp CEEECEEHHHHHHHHHHHHHT----HHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC-----------
T ss_pred eeEeeecccchhhHHHHHHhc----cccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCC-----------
Confidence 999999999999999999874 23457889999654 6789999999999999988765444321
Q ss_pred HHHHhcccccCCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHH
Q 012270 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (467)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~ 356 (467)
| .. ...+..|++|++++|||+|+++++|+|+++++|++.
T Consensus 299 ------------~-~~-------~~~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 299 ------------E-SD-------QRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp ------------S-SC-------CSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred ------------C-CC-------cCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 0 00 112446999999999999999999999999999986
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=4.1e-38 Score=310.29 Aligned_cols=313 Identities=18% Similarity=0.172 Sum_probs=235.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-- 84 (467)
++|||||||||||||++|+++|+++| ++|++++|........ +......++++++.+|++|++.+.+++++
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~------~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~ 79 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSL------FETARVADGMQSEIGDIRDQNKLLESIREFQ 79 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCH------HHHTTTTTTSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHHH------HhhhhcccCCeEEEeeccChHhhhhhhhhch
Confidence 46899999999999999999999999 5999999977532211 11112245799999999999999998874
Q ss_pred CCEEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHH
Q 012270 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (467)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~ 161 (467)
+|+|+|+|+... +..++...+++|+.|+.+++++|++.+.+++++.||.++++.......+.+|+. +..|.++|+
T Consensus 80 ~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~~~y~ 157 (356)
T d1rkxa_ 80 PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENE--AMGGYDPYS 157 (356)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTS--CBCCSSHHH
T ss_pred hhhhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccccccccccccccc--ccCCCCccc
Confidence 799999999543 346788899999999999999999986544444445445544444455666666 557889999
Q ss_pred HHHHHHHHHHHhhcC---------CCCceEEEEeCCCcccCCCC---CcHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 162 DLKAQAEALVLFANN---------IDGLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 162 ~sK~~~E~~v~~~~~---------~~g~~~~ilRp~~i~G~~~~---~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
.+|..+|..+..++. ..++.++++||+++|||++. .+++.+++.+..+.+ .+++++++.++++|++|
T Consensus 158 ~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~D 236 (356)
T d1rkxa_ 158 NSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQP-VIIRNPHAIRPWQHVLE 236 (356)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCC-EECSCTTCEECCEETHH
T ss_pred cccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCc-eEEeecccccccccccc
Confidence 999999998887543 24678999999999999863 366777777776665 57888999999999999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEc--CCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhccccc
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFIT--NLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~--~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 307 (467)
+|.++..+++..... ....+...+.. .....++.++++.+.+.++........+.
T Consensus 237 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------------- 293 (356)
T d1rkxa_ 237 PLSGYLLLAQKLYTD-GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGN---------------------- 293 (356)
T ss_dssp HHHHHHHHHHHHHHT-CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------------------------
T ss_pred ccchhhhhhhhhccc-ccccccccccccccccccccchhhhhhHHHhCCCccEEEcCC----------------------
Confidence 999999988753211 11122333333 34678999999999999998754322110
Q ss_pred CCCCchHHHHHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHHHHhhhc
Q 012270 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (467)
Q Consensus 308 ~~p~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~~~~~ 360 (467)
. .+.. ...+..|++|++++|||+|+++++|+|++|++||++....
T Consensus 294 ~----~~~~----~~~~~~d~skak~~LGw~P~~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 294 A----HPHE----AHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp --------C----CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred C----CCCC----cCeeeEcHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 0 0000 1234579999999999999999999999999999986543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=8.4e-38 Score=306.72 Aligned_cols=304 Identities=15% Similarity=0.071 Sum_probs=222.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++||||||+||||++|+++|+++| ++|+++.|+.+........ ............+.+|++|.+++.+++.++|
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~vR~~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 85 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKR---WDAKYPGRFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCchhHHHHHHh---hhccccccccEEEeccccchhhhhhhcccch
Confidence 36899999999999999999999999 5999999865421000000 0001112234557799999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC-CCCeEEEEcCccccccCCCCC--CCCCCCcc------------
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDI--HNGDETLT------------ 151 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~r~v~~SS~~vyg~~~~~~--~~~~E~~p------------ 151 (467)
+|+|+++......++...++.|+.||.|++++|++. +++++||+||+.+++...... ...+|+.+
T Consensus 86 ~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 165 (342)
T d1y1pa1 86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP 165 (342)
T ss_dssp EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred hhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccccc
Confidence 999999977777788889999999999999999997 699999999987654332211 12223221
Q ss_pred --cCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCC-----CcHHHHHHHhcCCCceEEecCCCccc
Q 012270 152 --CCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 152 --~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~ilRp~~i~G~~~~-----~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
.+.+|.++|+.+|..+|++++.+.+++ +++++++||+.+|||... ..+..++..+.+|+..... .+++.+
T Consensus 166 e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~ 244 (342)
T d1y1pa1 166 ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL-ALMPPQ 244 (342)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-HTCCSE
T ss_pred ccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-CCccce
Confidence 144567789999999999998886543 578899999999998532 3566777777777754333 456678
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHh
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~ 302 (467)
+|+||+|+|++++.+++ .+...| .||+++++.+|+.|+++.+.+.++.......+|.
T Consensus 245 ~~v~v~Dva~~~i~~l~-----~~~~~g-~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~----------------- 301 (342)
T d1y1pa1 245 YYVSAVDIGLLHLGCLV-----LPQIER-RRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD----------------- 301 (342)
T ss_dssp EEEEHHHHHHHHHHHHH-----CTTCCS-CEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC-----------------
T ss_pred eeeeHHHHHHHHHHhhc-----Cccccc-eEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCc-----------------
Confidence 99999999999999998 455555 5678888999999999999998854322222221
Q ss_pred cccccCCCCchHHHHHHhccceEe---ehhhHhhhCCCccccChHHHHHHHHHHH
Q 012270 303 GLRTYNHSLSACYIVQLASRTRTF---DCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (467)
Q Consensus 303 ~~~~~~~p~~~~~~~~~~~~~~~~---d~~k~~~~lG~~p~~~l~e~i~~~i~~~ 354 (467)
..+. ...+ .+.+..+.+||.|.++++|+|+++++..
T Consensus 302 -----~~~~-----------~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 302 -----QGQD-----------LSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp -----CCCC-----------CCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred -----cCcc-----------cccccchHHHHHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 1110 0112 2344445599999889999999998653
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=4.6e-36 Score=285.38 Aligned_cols=274 Identities=17% Similarity=0.140 Sum_probs=223.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D 86 (467)
|||||||||||||++|+++|.++| ++|++++|.. +|++|.+++.++++ ++|
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r~~--------------------------~D~~d~~~~~~~l~~~~~d 54 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN-VEVIPTDVQD--------------------------LDITNVLAVNKFFNEKKPN 54 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTTT--------------------------CCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEeechh--------------------------ccCCCHHHHHHHHHHcCCC
Confidence 789999999999999999999999 5999998743 38999999999987 579
Q ss_pred EEEEcccCCC---CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+|+... +...+......|+..+.++.+.++..+. +++++||..+|+. ....+.+|++ +..|.+.|+.+
T Consensus 55 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~--~~~~~~~e~~--~~~~~~~~~~~ 129 (281)
T d1vl0a_ 55 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDG--EAKEPITEFD--EVNPQSAYGKT 129 (281)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCS--CCSSCBCTTS--CCCCCSHHHHH
T ss_pred EEEeeccccccccccccchhhcccccccccccccccccccc-cccccccceeeec--cccccccccc--cccchhhhhhh
Confidence 9999998443 4456778889999999999999988765 7888999999853 3445677777 55788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|+++++ .+.+.+++||+++|||+.+ +...++..+..+..+.+.+ ++.++++|++|+|+++..+++.
T Consensus 130 k~~~e~~~~~----~~~~~~i~R~~~vyG~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~--- 199 (281)
T d1vl0a_ 130 KLEGENFVKA----LNPKYYIVRTAWLYGDGNN-FVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE--- 199 (281)
T ss_dssp HHHHHHHHHH----HCSSEEEEEECSEESSSSC-HHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHH----hCCCccccceeEEeCCCcc-cccchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhhhh---
Confidence 9999999988 4578999999999999864 5677777887888777765 4789999999999999999983
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (467)
.. .++||+++++.+|+.|+++.+.+.+|.+....++|.. ..+.... + ...
T Consensus 200 ---~~-~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~---------------------~~~~~a~-r----p~~ 249 (281)
T d1vl0a_ 200 ---KN-YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTE---------------------EFPRPAK-R----PKY 249 (281)
T ss_dssp ---TC-CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECST---------------------TSCCSSC-C----CSB
T ss_pred ---cc-cCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHH---------------------HcCCcCC-C----ccc
Confidence 22 3499999999999999999999999998766555422 1110000 0 012
Q ss_pred eEeehhhHhhhCCCccccChHHHHHHHHHHHH
Q 012270 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (467)
Q Consensus 324 ~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~ 355 (467)
..+|++|+++.+||+|+ +++|++++++++++
T Consensus 250 ~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 250 SVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp CCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 24699999999999997 99999999999985
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-35 Score=284.09 Aligned_cols=291 Identities=17% Similarity=0.113 Sum_probs=197.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHH-HHH-----hC
Q 012270 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK-KVL-----EG 84 (467)
Q Consensus 11 ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~-~~~-----~~ 84 (467)
||||||+||||++|+++|+++|+++|+++|+-..... .... .+....|..+.+.+. ... ..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--------FVNL-----VDLNIADYMDKEDFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--------GHHH-----HTSCCSEEEEHHHHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcch--------hhcc-----cccchhhhccchHHHHHHhhhhcccc
Confidence 8999999999999999999999658999985432100 0000 011112323333222 222 35
Q ss_pred CCEEEEcccCC-CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+++|+|+|+.. ....+.....+.|+.++.+++++++..+++ +++.||..+|+.... ...+|+. +..|.+.|+.+
T Consensus 69 ~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~~--~~~~~~~--~~~~~~~Y~~~ 143 (307)
T d1eq2a_ 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTS--DFIESRE--YEKPLNVYGYS 143 (307)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCCS--CBCSSGG--GCCCSSHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccc-ccccccccccccccc--ccccccc--ccccccccccc
Confidence 89999999843 344566778899999999999999999985 677777777754332 2334443 45788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceE-EecCCCccccccchhHHHHHHHH
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKF-IIGSGENMSDFTYVENVAHAHVC 236 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~-~~g~g~~~~~~i~v~Dva~a~~~ 236 (467)
|..+|.+++.++++++++++++||+++|||+.. ..+..+...+..++... ..|+++..++|+|++|+|.++..
T Consensus 144 K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred cchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999999764 24556677777776544 45788889999999999999999
Q ss_pred HHHHhccccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHH
Q 012270 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (467)
Q Consensus 237 al~~~~~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 316 (467)
+++. ...+.||+++++..|+.|+++++.+..+... ...+|.. ...
T Consensus 224 ~~~~-------~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~-i~~~~~~---------------------------~~~ 268 (307)
T d1eq2a_ 224 FLEN-------GVSGIFNLGTGRAESFQAVADATLAYHKKGQ-IEYIPFP---------------------------DKL 268 (307)
T ss_dssp HHHH-------CCCEEEEESCSCCBCHHHHHHHC----------------------------------------------
T ss_pred Hhhh-------ccccccccccccchhHHHHHHHHHHhcCCCC-eeEeeCC---------------------------ccC
Confidence 9873 2356999999999999999999987655321 1111110 000
Q ss_pred HHHhccceEeehhhHhhhCCCccccChHHHHHHHHHHH
Q 012270 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (467)
Q Consensus 317 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~ 354 (467)
..........|++|+++.+||+|+++++|+|+++++|+
T Consensus 269 ~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 269 KGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp ---CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred CCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 00011123458999999999999999999999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-33 Score=269.04 Aligned_cols=290 Identities=13% Similarity=0.073 Sum_probs=212.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC--CC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~D 86 (467)
|||||||||||||++|++.|.++|+ .| .+++... .+.+|++|.+.+.+++++ +|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v-~~~~~~~----------------------~~~~Dl~~~~~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LI-ALDVHSK----------------------EFCGDFSNPKGVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EE-EECTTCS----------------------SSCCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EE-EEECCCc----------------------cccCcCCCHHHHHHHHHHcCCC
Confidence 7899999999999999999999994 44 4454332 023799999999999874 79
Q ss_pred EEEEcccCC---CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 012270 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (467)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~s 163 (467)
+|||+||.. .+..++...++.|+.++.+++++|++.++ +++++||..+|+. ....+.+|+. +..|.+.|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~--~~~~~~~E~~--~~~p~~~y~~~ 131 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPG--TGDIPWQETD--ATSPLNVYGKT 131 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCC--CTTCCBCTTS--CCCCSSHHHHH
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcccc-ccccccccccccC--CCCCCCcccc--ccCCCchHhhh
Confidence 999999843 35678889999999999999999999886 7999999998853 3445778887 56789999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 164 K~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
|..+|+.++.+.. ...++|++..|+.........+...+..+..+...+ ....+++|++|+++++..+++....
T Consensus 132 k~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 132 KLAGEKALQDNCP----KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHhhhc----ccccccccceeeccCCccchhhhhhhcccceeeccc--ceeecccccchHHHHHHHHHhhhhc
Confidence 9999999988654 345666666665544444555666666666655544 5678999999999999988764322
Q ss_pred ccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHHHHHHHHHHHHHHHHhcccccCCCCchHHHHHHhccc
Q 012270 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (467)
Q Consensus 244 ~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 323 (467)
....+++||+++++.++..|+++.+.+..+.......++... +......+.. ..+ ...
T Consensus 206 --~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------~i~~~~~~~~-a~R----P~~ 263 (298)
T d1n2sa_ 206 --KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELN---------------AVPTSAYPTP-ASR----PGN 263 (298)
T ss_dssp --CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEE---------------EECSTTSCCS-SCC----CSB
T ss_pred --cccccccccccCCCceecHHHHHHHHhhhhccCcccccccee---------------eeehhhcCcc-CCC----ccc
Confidence 234567999999999999999999988764432221111000 0000000000 000 012
Q ss_pred eEeehhhHhhhCCCccccChHHHHHHHHHHHHH
Q 012270 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (467)
Q Consensus 324 ~~~d~~k~~~~lG~~p~~~l~e~i~~~i~~~~~ 356 (467)
..+|++|+++.+||+|+ +|+|+|+++++.+..
T Consensus 264 ~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~~~~ 295 (298)
T d1n2sa_ 264 SRLNTEKFQRNFDLILP-QWELGVKRMLTEMFT 295 (298)
T ss_dssp CCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHHCCCCC-cHHHHHHHHHHHHHh
Confidence 35799999999999997 999999999998865
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.97 E-value=4.3e-31 Score=254.04 Aligned_cols=250 Identities=11% Similarity=0.042 Sum_probs=193.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+++||||||||||||++|+++|+++|| +|++++|++......... ........+++++.+|+.|.+.+.+++++++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~---~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVVSNIDKVQ---MLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCSSCHHHHH---HHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCcccchhHHH---HHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 467899999999999999999999995 999999976522111000 0111234679999999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+++|+++.... ..|..++.+++++|++.+..++++.||.+++.+ .+.. +..+...|...|..
T Consensus 78 ~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~--------~~~~--~~~~~~~~~~~~~~ 139 (312)
T d1qyda_ 78 VVISALAGGVL--------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPD--------IMEH--ALQPGSITFIDKRK 139 (312)
T ss_dssp EEEECCCCSSS--------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTT--------SCCC--CCSSTTHHHHHHHH
T ss_pred hhhhhhhhccc--------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCC--------Cccc--ccchhhhhhHHHHH
Confidence 99999985432 345667788999999998888899998765421 1222 44567788888888
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~ 246 (467)
+|+..+. .+++++++||+.+||+........+......++.+.+++++++.++|||++|+|++++.+++ .+
T Consensus 140 ~~~~~~~----~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~-----~~ 210 (312)
T d1qyda_ 140 VRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID-----DP 210 (312)
T ss_dssp HHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT-----CG
T ss_pred HHHhhcc----cccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhc-----Cc
Confidence 8887766 68999999999999986654433333344566777889999999999999999999999997 45
Q ss_pred cCCCcE-EEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHH
Q 012270 247 SVAGMA-FFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (467)
Q Consensus 247 ~~~g~~-yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~ 287 (467)
...++. |++++++.+|+.|+++.+.+++|.+.+...+|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~~~~ 252 (312)
T d1qyda_ 211 QTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQD 252 (312)
T ss_dssp GGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSHH
T ss_pred cccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECCHHH
Confidence 556665 45555578999999999999999998888888754
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.3e-29 Score=224.67 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=163.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.|+||+||||||+||++++++|+++| ++|++++|++++. +.....+++++.+|++|.+++.++++++|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~-----------~~~~~~~~~~~~gD~~d~~~l~~al~~~d 69 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRL-----------PSEGPRPAHVVVGDVLQAADVDKTVAGQD 69 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGS-----------CSSSCCCSEEEESCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhc-----------ccccccccccccccccchhhHHHHhcCCC
Confidence 57899999999999999999999999 5999999987621 11234679999999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
+|||+++...... ..+++..++.++++++++++++|+|++||..+|++.+. .......|...|..
T Consensus 70 ~vi~~~g~~~~~~----~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~-----------~~~~~~~~~~~~~~ 134 (205)
T d1hdoa_ 70 AVIVLLGTRNDLS----PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK-----------VPPRLQAVTDDHIR 134 (205)
T ss_dssp EEEECCCCTTCCS----CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC-----------SCGGGHHHHHHHHH
T ss_pred EEEEEeccCCchh----hhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc-----------ccccccccchHHHH
Confidence 9999998543222 22567889999999999999999999999988743211 11233478899999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~ 246 (467)
+|+++++ .|++++++||+.+++.... +. ..+..+++....+|+++|+|++++.+++ .+
T Consensus 135 ~e~~l~~----~~~~~tiirp~~~~~~~~~------------~~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~-----~~ 192 (205)
T d1hdoa_ 135 MHKVLRE----SGLKYVAVMPPHIGDQPLT------------GA-YTVTLDGRGPSRVISKHDLGHFMLRCLT-----TD 192 (205)
T ss_dssp HHHHHHH----TCSEEEEECCSEEECCCCC------------SC-CEEESSSCSSCSEEEHHHHHHHHHHTTS-----CS
T ss_pred HHHHHHh----cCCceEEEecceecCCCCc------------cc-EEEeeCCCCCCCcCCHHHHHHHHHHHhC-----CC
Confidence 9999886 7899999999999865322 22 3456667778899999999999999998 46
Q ss_pred cCCCcEEEEcC
Q 012270 247 SVAGMAFFITN 257 (467)
Q Consensus 247 ~~~g~~yni~~ 257 (467)
...|+.+.++.
T Consensus 193 ~~~g~~~~~s~ 203 (205)
T d1hdoa_ 193 EYDGHSTYPSH 203 (205)
T ss_dssp TTTTCEEEEEC
T ss_pred CCCCEEEecCC
Confidence 67788888775
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.96 E-value=7.1e-30 Score=244.17 Aligned_cols=245 Identities=12% Similarity=0.153 Sum_probs=187.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++|||||||||||||++++++|+++|+ +|++++|.+......... .........+++++.+|+.+.+.+.+.+++++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSNSEKA--QLLESFKASGANIVHGSIDDHASLVEAVKNVD 78 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTTHHHH--HHHHHHHTTTCEEECCCTTCHHHHHHHHHTCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCccccchhHH--HHHHhhccCCcEEEEeecccchhhhhhhhhce
Confidence 468999999999999999999999995 999999987632221110 00011224578999999999999999999999
Q ss_pred EEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 012270 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (467)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~ 166 (467)
.|+|+++. .+..++.++++++++.+++++++.||...+. ++.. ...+...+...+..
T Consensus 79 ~vi~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~---------~~~~--~~~~~~~~~~~~~~ 135 (307)
T d1qyca_ 79 VVISTVGS------------LQIESQVNIIKAIKEVGTVKRFFPSEFGNDV---------DNVH--AVEPAKSVFEVKAK 135 (307)
T ss_dssp EEEECCCG------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSCT---------TSCC--CCTTHHHHHHHHHH
T ss_pred eeeecccc------------cccchhhHHHHHHHHhccccceeeecccccc---------cccc--cccccccccccccc
Confidence 99999872 3455667889999999999999998864431 2211 22334567777777
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccc
Q 012270 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (467)
Q Consensus 167 ~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~ 246 (467)
.|..+++ .+++++++||+++||+....+ ..+......+....+++++++.++|||++|+|++++.+++ .+
T Consensus 136 ~~~~~~~----~~~~~~i~r~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~-----~~ 205 (307)
T d1qyca_ 136 VRRAIEA----EGIPYTYVSSNCFAGYFLRSL-AQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD-----DP 205 (307)
T ss_dssp HHHHHHH----HTCCBEEEECCEEHHHHTTTT-TCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSS-----CG
T ss_pred ccchhhc----cCCCceecccceecCCCccch-hhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhc-----Ch
Confidence 8877776 678999999999999876542 2333345566677889999999999999999999999987 45
Q ss_pred cCCCcE-EEEcCCCCcCHHHHHHHHHHHcCCCCCCccCChHH
Q 012270 247 SVAGMA-FFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (467)
Q Consensus 247 ~~~g~~-yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~~~ 287 (467)
...++. |++++++.+|+.|+++.+.+++|.+.....+|.+.
T Consensus 206 ~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~~~~ 247 (307)
T d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 247 (307)
T ss_dssp GGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHH
T ss_pred hhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECCHHH
Confidence 555655 45566689999999999999999998877888754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.2e-29 Score=230.73 Aligned_cols=208 Identities=13% Similarity=0.052 Sum_probs=162.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
++|+|||||||||||++|+++|+++|.+ +|++++|++.... ......++...+|+.+.+++.++++++
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~-----------~~~~~~i~~~~~D~~~~~~~~~~~~~~ 81 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD-----------EEAYKNVNQEVVDFEKLDDYASAFQGH 81 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC-----------SGGGGGCEEEECCGGGGGGGGGGGSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhc-----------ccccceeeeeeeccccccccccccccc
Confidence 4578999999999999999999999942 8999999765211 112356888889999999999999999
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~ 165 (467)
|+|||+++......+...+.++|+.++.+++++|++.++++|||+||..++. .+.+.|+.+|.
T Consensus 82 d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~-----------------~~~~~Y~~~K~ 144 (232)
T d2bkaa1 82 DVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK-----------------SSNFLYLQVKG 144 (232)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHHH
T ss_pred ccccccccccccccchhhhhhhcccccceeeecccccCccccccCCcccccc-----------------CccchhHHHHH
Confidence 9999999966555566778999999999999999999999999999997752 33468999999
Q ss_pred HHHHHHHhhcCCCCc-eEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhcc
Q 012270 166 QAEALVLFANNIDGL-LTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~-~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~ 243 (467)
.+|+.+++. ++ +++|+||+.+||+++.... ..+....... ...+......||++|+|++++.++.
T Consensus 145 ~~E~~l~~~----~~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~I~~~dvA~a~i~~~~---- 211 (232)
T d2bkaa1 145 EVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGS-----LPDSWASGHSVPVVTVVRAMLNNVV---- 211 (232)
T ss_dssp HHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCS-----CCTTGGGGTEEEHHHHHHHHHHHHT----
T ss_pred Hhhhccccc----cccceEEecCceeecCCCcCcHHHHHHHHHhhc-----cCCcccCCCeEEHHHHHHHHHHHHh----
Confidence 999999884 44 5899999999999765432 3333333322 1123344567999999999998886
Q ss_pred ccccCCCcEEEEcC
Q 012270 244 RMVSVAGMAFFITN 257 (467)
Q Consensus 244 ~~~~~~g~~yni~~ 257 (467)
....++.+.+.+
T Consensus 212 --~~~~~~~~i~~~ 223 (232)
T d2bkaa1 212 --RPRDKQMELLEN 223 (232)
T ss_dssp --SCCCSSEEEEEH
T ss_pred --cCccCCeEEEcH
Confidence 334455776654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=1.2e-25 Score=207.49 Aligned_cols=228 Identities=14% Similarity=0.038 Sum_probs=169.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.|++|||||||||||++++++|+++|| ..|+.+.|+++.. .....+++++.+|+.|.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~ 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK------------EKIGGEADVFIGDITDADSINPAFQGI 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH------------HHTTCCTTEEECCTTSHHHHHHHHTTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH------------HhccCCcEEEEeeeccccccccccccc
Confidence 478999999999999999999999996 2566677766411 012346889999999999999999999
Q ss_pred CEEEEcccCCC----------------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 86 STVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 86 D~Vih~aa~~~----------------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
|+|||+++... ...+......+|+.++.++++.+.....+++.+.|+..++. ..
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~----------~~ 139 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN----------PD 139 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC----------TT
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCC----------CC
Confidence 99999998321 12335567889999999999999999999999999876652 11
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhH
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 229 (467)
.+....+...|...+...+.+... .|++++++||+.+||+..... + ....... . ......++||++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ilRp~~v~g~~~~~~-~----~~~~~~~-~---~~~~~~~~i~~~D 206 (252)
T d2q46a1 140 HPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR-E----LLVGKDD-E---LLQTDTKTVPRAD 206 (252)
T ss_dssp CGGGGGGGCCHHHHHHHHHHHHHH----SSSCEEEEEECEEECSCTTSS-C----EEEESTT-G---GGGSSCCEEEHHH
T ss_pred cccccccccchhhhhhhhhhhhhc----ccccceeecceEEECCCcchh-h----hhhccCc-c---cccCCCCeEEHHH
Confidence 122334556788888877776665 789999999999999975421 0 0000000 0 0133468999999
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEcCCC---CcCHHHHHHHHHHHc
Q 012270 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE---PIKFWDFLSIILEGL 274 (467)
Q Consensus 230 va~a~~~al~~~~~~~~~~~g~~yni~~~~---~~s~~el~~~i~~~~ 274 (467)
+|++++.+++ .+...|++|||+++. ..++.|+.+++.+..
T Consensus 207 va~a~~~~l~-----~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 207 VAEVCIQALL-----FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHHTT-----CGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHHhC-----CccccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 9999999998 567788999999753 356777777766544
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=7.4e-26 Score=205.71 Aligned_cols=186 Identities=16% Similarity=0.118 Sum_probs=136.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-CC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-~~ 85 (467)
+|+|||||||||||++|+++|+++|++ +|.++.|++.. ..+. +..+..|..++.+.+. ++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~---------------~~~~---~~~~~~d~~~~~~~~~~~~ 63 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------EHPR---LDNPVGPLAELLPQLDGSI 63 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------CCTT---EECCBSCHHHHGGGCCSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh---------------hccc---ccccccchhhhhhccccch
Confidence 589999999999999999999999963 67766665431 1122 3445555555544443 58
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK 164 (467)
|+|||++|... ...+...+.+.|+.++.+++++|++.++++++|+||..++. .+.+.|+.+|
T Consensus 64 d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~-----------------~~~~~y~~~K 126 (212)
T d2a35a1 64 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 126 (212)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred heeeeeeeeeccccccccccccchhhhhhhccccccccccccccccccccccc-----------------ccccchhHHH
Confidence 99999998432 33445778999999999999999999999999999987762 3357899999
Q ss_pred HHHHHHHHhhcCCCCc-eEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHH
Q 012270 165 AQAEALVLFANNIDGL-LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 165 ~~~E~~v~~~~~~~g~-~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~ 239 (467)
..+|+.+++. ++ +++|+||+.+||+.+...+..++ ........+ ..+++||++|+|++++.+++
T Consensus 127 ~~~E~~l~~~----~~~~~~I~Rp~~v~G~~~~~~~~~~~---~~~~~~~~~----~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 127 GELEQALQEQ----GWPQLTIARPSLLFGPREEFRLAEIL---AAPIARILP----GKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHHTTS----CCSEEEEEECCSEESTTSCEEGGGGT---TCCCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhcccc----ccccceeeCCcceeCCcccccHHHHH---HHHHhhccC----CCCcEEEHHHHHHHHHHHHc
Confidence 9999998763 44 59999999999998764332221 111111111 23577999999999999887
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.92 E-value=9.2e-25 Score=213.78 Aligned_cols=240 Identities=14% Similarity=0.015 Sum_probs=176.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH-HHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~ 85 (467)
+.|+|+|||||||||++++++|+++| ++|+++.|+++... .......++++.+.+|+.|. +.+..++.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~~~~~--------~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~ 72 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLI--------AEELQAIPNVTLFQGPLLNNVPLMDTLFEGA 72 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHH--------HHHHHTSTTEEEEESCCTTCHHHHHHHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCcchhh--------hhhhcccCCCEEEEeeCCCcHHHHHHHhcCC
Confidence 56899999999999999999999999 59999999775210 01112346899999999985 4577888999
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~ 165 (467)
|++++...... ..++..+.+++++|++.|++|+++.||....... ...+..+|..+|.
T Consensus 73 ~~~~~~~~~~~---------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~-------------~~~~~~~~~~~k~ 130 (350)
T d1xgka_ 73 HLAFINTTSQA---------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY-------------GPWPAVPMWAPKF 130 (350)
T ss_dssp SEEEECCCSTT---------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGT-------------SSCCCCTTTHHHH
T ss_pred ceEEeeccccc---------chhhhhhhHHHHHHHHhCCCceEEEeeccccccC-------------CcccchhhhhhHH
Confidence 99987764321 3467778999999999999999999987543110 2234456778899
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHH-HhcCCC-ceEEecCCCccccccch-hHHHHHHHHHHHHhc
Q 012270 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN-LAKPGW-TKFIIGSGENMSDFTYV-ENVAHAHVCAAEALD 242 (467)
Q Consensus 166 ~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~-~~~~g~-~~~~~g~g~~~~~~i~v-~Dva~a~~~al~~~~ 242 (467)
..|.++++ .+++++++||+.+++.......+.+.. ....+. ....+.+++...+++++ +|+++++..+++..
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~- 205 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG- 205 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHh----hccCceeeeeceeeccccccccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCC-
Confidence 99988877 568999999999887643221111111 122222 23455667788888886 79999999988631
Q ss_pred cccccCCCcEEEEcCCCCcCHHHHHHHHHHHcCCCCCCccCCh
Q 012270 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285 (467)
Q Consensus 243 ~~~~~~~g~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~ip~ 285 (467)
.....|+.|++++ +.+|+.|+++.+.+++|.+...+.+|.
T Consensus 206 --~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 206 --PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp --HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred --hhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 1234788999987 579999999999999999876666654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=1.7e-18 Score=159.49 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=156.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||+++++.|+++| ++|.+.+|+... +.+.....+...+.+|++|+++++++++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~~~~----------l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 72 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEEGP----------LREAAEAVGAHPVVMDVADPASVERGFAEAL 72 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HHHHHHTTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH----------HHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 67999999999999999999999999 599999997642 1111223467889999999999887754
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... +.++++..+++|+.++..+.+++... +-.+++.+||....
T Consensus 73 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~------------ 140 (242)
T d1ulsa_ 73 AHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL------------ 140 (242)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG------------
T ss_pred HhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc------------
Confidence 4899999999322 33557889999999999988876654 44567777775432
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+.................| ...+.
T Consensus 141 ----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~p---------l~R~~ 207 (242)
T d1ulsa_ 141 ----GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATP---------LGRAG 207 (242)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCT---------TCSCB
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCC---------CCCCC
Confidence 1123468999999999888776532 6899999999999776544433444433333222 22355
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.++|+|.+++.++.. ...-..|+++.+.++.
T Consensus 208 ~pedia~~v~fL~S~---~s~~itG~~i~vDGG~ 238 (242)
T d1ulsa_ 208 KPLEVAYAALFLLSD---ESSFITGQVLFVDGGR 238 (242)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhch---hhCCCCCcEEEECCCc
Confidence 689999999988741 1345689999998874
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=1.8e-18 Score=158.73 Aligned_cols=210 Identities=14% Similarity=0.089 Sum_probs=152.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
+.++|+++||||++-||+++++.|+++| ++|.+.+|+.. ...++..+.+|++|+++++++++
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~G-a~V~~~~r~~~----------------~~~~~~~~~~Dv~~~~~v~~~~~~ 66 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSG----------------APKGLFGVEVDVTDSDAVDRAFTA 66 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSC----------------CCTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCcc----------------hhcCceEEEEecCCHHHHHHHHHH
Confidence 4478999999999999999999999999 59999999764 12356789999999999877654
Q ss_pred ------CCCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||.. .+.++++..+++|+.++..+.+++. +.+-.++|++||.....
T Consensus 67 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~--------- 137 (237)
T d1uzma1 67 VEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW--------- 137 (237)
T ss_dssp HHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------
T ss_pred HHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc---------
Confidence 489999999932 2346678899999999887766544 44666999999986641
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+..+.....-........+.. ...-
T Consensus 138 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~---------pl~R 202 (237)
T d1uzma1 138 ------GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFI---------PAKR 202 (237)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGC---------TTCS
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCHHHHHHHHhcC---------CCCC
Confidence 1123568999999999888776533 689999999999854421111122222222211 1234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 203 ~~~pedvA~~v~fL~S~---~s~~itG~~i~vdGG 234 (237)
T d1uzma1 203 VGTPAEVAGVVSFLASE---DASYISGAVIPVDGG 234 (237)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCc---hhcCCcCCeEEECCC
Confidence 66799999999988741 124468999999876
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.74 E-value=1.1e-17 Score=154.99 Aligned_cols=220 Identities=11% Similarity=0.032 Sum_probs=157.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|.++||||++-||+++++.|.++| ++|.+.+|+........++ +.. ...++..+.+|++|++++.++++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~---l~~--~g~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDE---IKS--FGYESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHH---HHT--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHH---HHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 367899999999999999999999999 5999999976421100000 111 13468899999999999887764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... ..++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 82 ~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~---------- 151 (251)
T d2c07a1 82 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT---------- 151 (251)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------
T ss_pred HHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC----------
Confidence 5899999999321 2356788999999999888886553 3556999999987651
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.+.................| ..-+
T Consensus 152 -----~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~p---------l~R~ 217 (251)
T d2c07a1 152 -----GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIP---------AGRM 217 (251)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCT---------TSSC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcCC---------CCCC
Confidence 112346899999999998888753 36899999999999776544434444444444332 2236
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..++|+|.+++.++.. ...-..|+++.+.+|
T Consensus 218 ~~pedvA~~v~fL~S~---~s~~itG~~i~vDGG 248 (251)
T d2c07a1 218 GTPEEVANLACFLSSD---KSGYINGRVFVIDGG 248 (251)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCc---hhCCCcCcEEEECCC
Confidence 6789999999888741 124468999998886
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=6.3e-18 Score=156.12 Aligned_cols=220 Identities=13% Similarity=0.081 Sum_probs=153.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|++|||||++-||+++++.|.++| +.|.+.+|++... +.....+...+.+|++|+++++++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~~~~~-----------~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 71 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGK-----------EVAEAIGGAFFQVDLEDERERVRFVEEAA 71 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTHH-----------HHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH-----------HHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999 5999999976411 01112246788999999998877654
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... +.++++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 72 ~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~----------- 140 (248)
T d2d1ya1 72 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------- 140 (248)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS-----------
T ss_pred HhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc-----------
Confidence 4899999999321 3355778999999999998887764 3456899999987651
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcC-CCceEEecCCCccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP-GWTKFIIGSGENMSDF 224 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~-g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.| ........... ........+......+
T Consensus 141 ----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~----~~~~~~~~~~~~~~~~~~~~~~~pl~R~ 212 (248)
T d2d1ya1 141 ----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE----AVLEAIALSPDPERTRRDWEDLHALRRL 212 (248)
T ss_dssp ----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH----HHHHHHC--------CHHHHTTSTTSSC
T ss_pred ----cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCc----hHHHHhhcCCCHHHHHHHHHhcCCCCCC
Confidence 2234568999999999887776533 6899999999888433 11111100000 0000000111123346
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
..++|+|.+++.++.. ...-..|+.+.+.++-.
T Consensus 213 ~~pedia~~v~fL~S~---~s~~itG~~i~vDGG~t 245 (248)
T d2d1ya1 213 GKPEEVAEAVLFLASE---KASFITGAILPVDGGMT 245 (248)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred cCHHHHHHHHHHHhCc---hhcCCCCcEEEcCcCcc
Confidence 7799999999988741 13457899999988743
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.74 E-value=3e-17 Score=151.56 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=151.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|.++||||++-||+++++.|+++| +.|.+.+|++..... . ... ....++..+.+|++|+++++++++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~---~--~~~--~~g~~~~~~~~Dvs~~~~v~~~~~~~ 74 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEAE---A--AIR--NLGRRVLTVKCDVSQPGDVEAFGKQV 74 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHHH---H--HHH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHH---H--HHH--HcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 599999987641100 0 001 123578899999999999887753
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.++++..+++|+.++..+.+++.. .+-.++|++||.+...
T Consensus 75 ~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~---------- 144 (247)
T d2ew8a1 75 ISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------- 144 (247)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc----------
Confidence 5899999999322 3356788999999999998887654 3556899999986541
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCcccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.+...... ....... .........
T Consensus 145 -----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~--------~~~~~~l~r 211 (247)
T d2ew8a1 145 -----KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVL--------PNMLQAIPR 211 (247)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------------CTTSSSCS
T ss_pred -----cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHHH--------HHHhccCCC
Confidence 222346899999999988877753 36899999999988655322111 1111111 111112224
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 212 ~~~pedvA~~v~fL~S~---~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 212 LQVPLDLTGAAAFLASD---DASFITGQTLAVDGG 243 (247)
T ss_dssp CCCTHHHHHHHHHHTSG---GGTTCCSCEEEESSS
T ss_pred CCCHHHHHHHHHHHhCc---hhcCCcCCeEEECCC
Confidence 66789999999987741 123468999999886
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=5.1e-18 Score=156.33 Aligned_cols=217 Identities=12% Similarity=0.051 Sum_probs=156.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||+++++.|+++| ++|.+.+|++..... +.+.. ..+...+.+|++|+++++++++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~~~l~~-------~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQA-------ISDYL-GANGKGLMLNVTDPASIESVLEKIR 73 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-------HHHHH-GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHH-------HHHHh-CCCCcEEEEEecCHHHhhhhhhhhh
Confidence 67999999999999999999999999 599999997642100 01111 2457889999999998877764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+|+... ..++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~----------- 142 (243)
T d1q7ba_ 74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM----------- 142 (243)
T ss_dssp HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------
T ss_pred cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC-----------
Confidence 4899999998322 3356788999999999998887753 3556899999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+......+.......+..| ...+.
T Consensus 143 ----~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R~~ 209 (243)
T d1q7ba_ 143 ----GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVP---------AGRLG 209 (243)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCT---------TSSCB
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhcCC---------CCCCC
Confidence 1123468999999999988877532 6899999999988543222222222223333222 23466
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.++|+|.+++.++.. ...-..|+++++.++-
T Consensus 210 ~pedvA~~v~fL~S~---~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 210 GAQEIANAVAFLASD---EAAYITGETLHVNGGM 240 (243)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCc---hhcCCcCCeEEECCCe
Confidence 799999999988741 1244689999998863
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=2.8e-17 Score=151.21 Aligned_cols=213 Identities=14% Similarity=0.055 Sum_probs=154.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| ++|.+.+|++...... .+. ...++..+.+|++|+++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~-------~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~ 74 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKAM-------AAE-LADAARYVHLDVTQPAQWKAAVDTA 74 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH-------HHH-TGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH-------HHH-hhCcceEEEeecCCHHHHHHHHHHH
Confidence 468999999999999999999999999 5999999976421100 011 12457889999999999877764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.++++..+++|+.++..+.+++.. .+-.++|++||...+.
T Consensus 75 ~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~---------- 144 (244)
T d1nffa_ 75 VTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA---------- 144 (244)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc----------
Confidence 4899999999322 3355788999999999998886643 3456899999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+-||.+-.|.... ..... .......+
T Consensus 145 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~--------~~~~~------~~~pl~R~ 205 (244)
T d1nffa_ 145 -----GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW--------VPEDI------FQTALGRA 205 (244)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT--------SCTTC------SCCSSSSC
T ss_pred -----ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhh--------hhHHH------HhccccCC
Confidence 1123468999999999988877633 68999999999886543211 00100 01122347
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..++|+|.+++.++.. ...-..|+++.+.++.
T Consensus 206 ~~p~diA~~v~fL~s~---~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 206 AEPVEVSNLVVYLASD---ESSYSTGAEFVVDGGT 237 (244)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred CCHHHHHHHHHHHhCh---hhCCCcCCEEEECCCe
Confidence 7899999999988741 1244689999998863
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=1.1e-17 Score=154.01 Aligned_cols=218 Identities=17% Similarity=0.131 Sum_probs=156.3
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.+ ++|++|||||++-||+++++.|+++| ++|.+.+|+...... +.+ ..+++..+.+|++|++++++
T Consensus 1 mdl---~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~-------~~~--~~~~~~~~~~Dv~~~~~v~~ 67 (242)
T d1cyda_ 1 LNF---SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVS-------LAK--ECPGIEPVCVDLGDWDATEK 67 (242)
T ss_dssp CCC---TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH--HSTTCEEEECCTTCHHHHHH
T ss_pred CCC---CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHH--hcCCCeEEEEeCCCHHHHHH
Confidence 555 68999999999999999999999999 599999997642100 000 12468889999999999999
Q ss_pred HHhC---CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccCCCCCCC
Q 012270 81 VLEG---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 81 ~~~~---~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
+++. +|++||+||... +.++++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 68 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-------- 139 (242)
T d1cyda_ 68 ALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV-------- 139 (242)
T ss_dssp HHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------
T ss_pred HHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc--------
Confidence 9874 799999999422 34557789999999999988865432 335899999986541
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+-||.+-.+..... -+.....+.... +
T Consensus 140 -------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~---------p 203 (242)
T d1cyda_ 140 -------TFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERH---------P 203 (242)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHS---------T
T ss_pred -------cCCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcC---------C
Confidence 1123468999999999988877533 689999999998854421100 012222222211 1
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 204 l~R~~~peeva~~v~fL~S~---~s~~itG~~i~vDGG 238 (242)
T d1cyda_ 204 LRKFAEVEDVVNSILFLLSD---RSASTSGGGILVDAG 238 (242)
T ss_dssp TSSCBCHHHHHHHHHHHHSG---GGTTCCSSEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCc---hhcCcCCceEEeCcc
Confidence 23466799999999988741 134568999999886
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3e-18 Score=159.11 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=155.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
.+|++|||||++-||+++++.|+++| ++|.+.+|+.........+ +.+.....++..+.+|++|+++++++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAA---LHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 47899999999999999999999999 5999999976421110010 1122234568899999999998887764
Q ss_pred ----CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC----C---CCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 84 ----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC----K---VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~----~---v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
++|++||+|+... ..+++..+++|+.++.++..++... + -.++|++||...+.
T Consensus 78 ~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~--------------- 141 (254)
T d2gdza1 78 DHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------------- 141 (254)
T ss_dssp HHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred HHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---------------
Confidence 4899999999643 4678899999999988877766543 2 24699999987641
Q ss_pred CCCCCChHHHHHHHHHHHHHh------hcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce---EEecCCCcccc
Q 012270 153 CWKFQDLMCDLKAQAEALVLF------ANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK---FIIGSGENMSD 223 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~------~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~---~~~g~g~~~~~ 223 (467)
+......|+.+|+..+.+.+. +++ +|+++..+.||.+--+ ++..+......+... ....+......
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~-~gIrVN~I~PG~i~T~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 216 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMN-SGVRLNAICPGFVNTA----ILESIEKEENMGQYIEYKDHIKDMIKYYG 216 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEESCBSSH----HHHGGGCHHHHGGGGGGHHHHHHHHHHHC
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEEEcCCCCCh----hhhhccccccccccHHHHHHHHhcCCCCC
Confidence 222346899999999988763 233 7899999999988432 111110000000000 00000001123
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcCHH
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s~~ 264 (467)
+..++|+|++++.++. .+...|+++.+.++..+.+.
T Consensus 217 ~~~pedvA~~v~fL~s-----~~~itG~~i~VdGG~~~~~~ 252 (254)
T d2gdza1 217 ILDPPLIANGLITLIE-----DDALNGAIMKITTSKGIHFQ 252 (254)
T ss_dssp CBCHHHHHHHHHHHHH-----CTTCSSCEEEEETTTEEEEC
T ss_pred CcCHHHHHHHHHHHHc-----CCCCCCCEEEECCCCeeecc
Confidence 5668999999999987 45678999999998765543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.72 E-value=8.9e-18 Score=156.01 Aligned_cols=229 Identities=14% Similarity=0.126 Sum_probs=156.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||+++++.|+++| ++|.+.+|+....... .+.+ ..++..+.+|++|+++++++++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~-------~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~ 74 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARAT-------AAEI-GPAACAIALDVTDQASIDRCVAELL 74 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHHH-------HHHH-CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH-------HHHh-CCceEEEEeeCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999 5999999976421100 0111 3568889999999999887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.++++..+++|+.++..+.+++... +-.++|++||.+.+.
T Consensus 75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------- 144 (256)
T d1k2wa_ 75 DRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR---------- 144 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc----------
Confidence 4899999999432 33557889999999999988864432 245899999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc--CCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK--PGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~--~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.|.............. ............+..
T Consensus 145 -----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg 219 (256)
T d1k2wa_ 145 -----GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFG 219 (256)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTS
T ss_pred -----ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCC
Confidence 223346899999999998877653 3689999999988865532211111111100 000000000001123
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
-+..++|+|.+++.++.. ...-..|+++.+.+|..+|
T Consensus 220 R~~~p~evA~~v~fL~S~---~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 220 RMGRAEDLTGMAIFLATP---EADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp SCBCHHHHHHHHHHTTSG---GGTTCCSCEEEESTTSSCC
T ss_pred CCcCHHHHHHHHHHHhCc---hhCCccCceEEECcchhhC
Confidence 466799999999987631 1244689999998876543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=5.2e-17 Score=149.59 Aligned_cols=216 Identities=17% Similarity=0.112 Sum_probs=156.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|++|||||++-||+++++.|+++| ++|.+.+|+...... +.+ ..+++..+.+|++|+++++++++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~-------~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 74 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDS-------LVR--ECPGIEPVCVDLGDWEATERALGSV 74 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH--HSTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHH-------HHH--hcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 478999999999999999999999999 599999997652100 011 12467889999999999998886
Q ss_pred -CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh-----CCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~-----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|++||+|+... +.++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 75 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------- 141 (244)
T d1pr9a_ 75 GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------- 141 (244)
T ss_dssp CCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc-------------
Confidence 4799999999322 3456788999999999888876553 2346899999986641
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecCCCcccccc
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+..+..... -+.......+..| ...+.
T Consensus 142 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------l~R~~ 210 (244)
T d1pr9a_ 142 --AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP---------LGKFA 210 (244)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCT---------TCSCB
T ss_pred --cccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCC---------CCCCc
Confidence 1223468999999999988877532 689999999998865421110 0122222222221 23466
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.++|+|.+++.++.. ...-..|+++.+.++
T Consensus 211 ~peevA~~v~fL~S~---~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 211 EVEHVVNAILFLLSD---RSGMTTGSTLPVEGG 240 (244)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCc---hhCCcCCcEEEECcc
Confidence 799999999987741 124568899988876
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.8e-17 Score=153.68 Aligned_cols=220 Identities=10% Similarity=0.071 Sum_probs=156.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||++++++|+++| +.|.+.+|+........++ +.. ...++..+.+|++|+++++++++
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~---l~~--~g~~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDE---IQQ--LGGQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHH---HHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 5999999976421100000 111 13568889999999998877654
Q ss_pred ----CCCEEEEcccCCC------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 ----~~D~Vih~aa~~~------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... +.++++..+++|+.++.++.+++... +-.++|++||.....
T Consensus 84 ~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~------------ 151 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN------------ 151 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC------------
T ss_pred HHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc------------
Confidence 5899999999322 33557889999999999888766543 445899999986641
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEecCCCcccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-~~~~~~~~~~~g~~~~~~g~g~~~~~~i 225 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+-||.+-.+.... .-+.......+..| ..-+.
T Consensus 152 ---~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~p---------l~R~g 219 (255)
T d1fmca_ 152 ---KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP---------IRRLG 219 (255)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS---------SCSCB
T ss_pred ---cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCC---------CCCCc
Confidence 1234568999999999988777532 68999999999986542111 11233333333222 22456
Q ss_pred chhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 226 ~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.++|+|.+++.++.. ...-..|+++.+.+|.
T Consensus 220 ~pedvA~~v~fL~S~---~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 220 QPQDIANAALFLCSP---AASWVSGQILTVSGGG 250 (255)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCc---hhcCCcCCEEEECcCc
Confidence 789999999988741 1234689999999874
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.72 E-value=6.4e-17 Score=149.65 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=154.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| +.|.+.+|+....... ........++..+.+|++|+++++++++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~------~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKA------AKSVGTPDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHHhCCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 5999999976421100 0111124578999999999998877654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCC-eEEEEcCccccccCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVR-RLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~-r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+|+... +.+++...+++|+.++.++.+++.. .+.. ++|++||...+.
T Consensus 77 ~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~--------- 147 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV--------- 147 (251)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------
T ss_pred HHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec---------
Confidence 4899999999321 3355678999999999998887653 3443 789999986541
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhc-----CCCCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~-----~~~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+......|+.+|...+.+.+.++ ..+|+++..+.||.+-.+...... +......... ..
T Consensus 148 ------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~---------~p 212 (251)
T d1zk4a1 148 ------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTK---------TP 212 (251)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTT---------CT
T ss_pred ------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhC---------CC
Confidence 11234689999999998877654 347899999999988644211111 1111111111 12
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..-+..++|+|.+++.++.. ...-..|+.+.+.++
T Consensus 213 l~R~~~pedvA~~v~fL~S~---~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 213 MGHIGEPNDIAYICVYLASN---ESKFATGSEFVVDGG 247 (251)
T ss_dssp TSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCc---hhCCCcCcEEEECcc
Confidence 23467799999999988741 124468999999886
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.71 E-value=1.9e-17 Score=154.17 Aligned_cols=230 Identities=10% Similarity=0.090 Sum_probs=152.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||++++++|+++| ++|.+.+|+.........+ .+. .....++.++.+|++|+++++++++
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r~~~~~~~~~~~--~~~-~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRA--GLA-AQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHH--HHH-HHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHH--HHH-HhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 5999999975311100000 000 0113468889999999999887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
++|++||+||... +.+++...+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~----------- 147 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV----------- 147 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred HHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee-----------
Confidence 4899999999332 3455788999999999888776554 3556999999987641
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc-CC-C-ceEEecCCCccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK-PG-W-TKFIIGSGENMS 222 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~-~g-~-~~~~~g~g~~~~ 222 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.|.....+........ .. . .........+..
T Consensus 148 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~ 223 (260)
T d1x1ta1 148 ----ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSL 223 (260)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTC
T ss_pred ----ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCC
Confidence 112346899999999988877653 3689999999998865532222111110000 00 0 000000111223
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 224 R~g~pediA~~v~fL~S~---~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 224 QFVTPEQLGGTAVFLASD---AAAQITGTTVSVDGG 256 (260)
T ss_dssp CCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCh---hhCCCcCCEEEECcc
Confidence 467899999999988741 134578999998886
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.71 E-value=3.9e-17 Score=151.70 Aligned_cols=223 Identities=12% Similarity=0.055 Sum_probs=156.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||+.+++.|+++| +.|.+.+|+........++ +.......++..+.+|++|+++++++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~---~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 78 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAA---VLETAPDAEVLTTVADVSDEAQVEAYVTATT 78 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhhCCCCeEEEEeccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 5999999976421000000 1111223468889999999999887754
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.++++..+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~---------- 148 (258)
T d1iy8a_ 79 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR---------- 148 (258)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc----------
Confidence 4899999998321 2355778999999999999887643 3556899999986641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--------HHHHHHHhcCCCceEEec
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--------VPLLVNLAKPGWTKFIIG 216 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~--------~~~~~~~~~~g~~~~~~g 216 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+..|..... ............
T Consensus 149 -----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~------ 217 (258)
T d1iy8a_ 149 -----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN------ 217 (258)
T ss_dssp -----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcC------
Confidence 122357899999999988877653 3689999999998854321100 111112222211
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
...-+..++|+|.+++.++.. ...-..|+++.+.++..
T Consensus 218 ---pl~R~~~p~dvA~~v~fL~S~---~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 218 ---PSKRYGEAPEIAAVVAFLLSD---DASYVNATVVPIDGGQS 255 (258)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhCc---hhcCCcCceEEcCcchh
Confidence 223466799999999988741 13456899999988754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=4.4e-17 Score=150.72 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=155.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| +.|.+.+|+........++ +.+ ....++..+.+|++|+++++++++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~---l~~-~~g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQK---LTE-KYGVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH-HhCCcEEEEEccCCCHHHHHHHHHHH
Confidence 368999999999999999999999999 5999999976421100000 000 113468889999999998877764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.++++..+++|+.++..+.+++... +-.++|++||..... .
T Consensus 78 ~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~-~-------- 148 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE-V-------- 148 (251)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC-C--------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc-c--------
Confidence 5899999999322 34567889999999999988876543 456999999965421 0
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+...... +.......+..| ..
T Consensus 149 -----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p---------l~ 214 (251)
T d1vl8a_ 149 -----TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP---------LG 214 (251)
T ss_dssp -----CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCT---------TS
T ss_pred -----cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCC---------CC
Confidence 1123468999999999988777532 6899999999998665432211 122222222222 22
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+..++|+|++++.++.. ...-..|+++.+.++
T Consensus 215 R~~~pedvA~~v~fL~S~---~a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 215 RTGVPEDLKGVAVFLASE---EAKYVTGQIIFVDGG 247 (251)
T ss_dssp SCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHhCc---hhCCCcCcEEEeCcC
Confidence 355689999999987741 124467999999876
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.70 E-value=1.3e-16 Score=147.61 Aligned_cols=218 Identities=13% Similarity=0.080 Sum_probs=153.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||++++++|+++| +.|.+.+|+....... ..+ ...++.++.+|++|+++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~------~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 73 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAAT------ARE--LGDAARYQHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHT--TGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHH--hCCceEEEEcccCCHHHHHHHHHHH
Confidence 468999999999999999999999999 5999999976421111 011 12468899999999999887764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... ..++++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 74 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~---------- 143 (254)
T d1hdca_ 74 REEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM---------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc----------
Confidence 5899999999332 3355778999999999998887753 3566999999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+..+ +... ....... ... .......+
T Consensus 144 -----~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~----~~~~---~~~~~~~-~~~-~~~pl~R~ 209 (254)
T d1hdca_ 144 -----GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP----MTAE---TGIRQGE-GNY-PNTPMGRV 209 (254)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH----HHHH---HTCCCST-TSC-TTSTTSSC
T ss_pred -----cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc----cchh---cCHHHHH-HHH-hCCCCCCC
Confidence 122346899999999998888763 36899999999988432 1111 1111110 000 00111122
Q ss_pred -cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 -TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 -i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..++|+|.+++.++.. ...-..|+++.+.++-
T Consensus 210 g~~PedvA~~v~fL~S~---~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 210 GNEPGEIAGAVVKLLSD---TSSYVTGAELAVDGGW 242 (254)
T ss_dssp B-CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhch---hhCCCCCceEEeCCCc
Confidence 3579999999988741 1234689999999873
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.9e-16 Score=146.22 Aligned_cols=217 Identities=14% Similarity=0.084 Sum_probs=154.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| ++|.+.+|+...... +.+ ..+++.++.+|++|+++++++++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~-------~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~ 73 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRA-------LEQ--ELPGAVFILCDVTQEDDVKTLVSET 73 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHH--HCTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHH--hcCCCeEEEccCCCHHHHHHHHHHH
Confidence 368999999999999999999999999 599999997642110 111 12468899999999999887754
Q ss_pred -----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.++++..+++|+.++.++.+++... +-.++|++||.+...
T Consensus 74 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~---------- 143 (250)
T d1ydea1 74 IRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------- 143 (250)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------
T ss_pred HHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc----------
Confidence 4899999999321 22446789999999999988877644 225899999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEecCC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~------~~~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.|--|... .-....+.......
T Consensus 144 -----~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-------- 210 (250)
T d1ydea1 144 -----GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ-------- 210 (250)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS--------
T ss_pred -----cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcC--------
Confidence 223356899999999998877753 36899999999988433100 00011111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+..-+..++|+|.+++.++.. ..-..|+++.+.++..
T Consensus 211 -pl~R~g~p~eva~~v~fL~Sd----a~~itG~~i~vDGG~~ 247 (250)
T d1ydea1 211 -PLGRMGQPAEVGAAAVFLASE----ANFCTGIELLVTGGAE 247 (250)
T ss_dssp -TTSSCBCHHHHHHHHHHHHHH----CTTCCSCEEEESTTTT
T ss_pred -CCCCCCCHHHHHHHHHHHhCc----cCCCcCCeEEECCCcc
Confidence 123466799999999987641 3456899999988743
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.70 E-value=3.7e-17 Score=152.23 Aligned_cols=228 Identities=16% Similarity=0.154 Sum_probs=155.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|++|||||++-||+++++.|+++| ++|.+.+|+........++ +.+ ....++..+.+|++|+++++++++
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~---~~~-~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEK---VGK-EFGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHH---HHH-HHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHH-HhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 67999999999999999999999999 6999999977521110000 000 113568889999999999887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC-----CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~-----~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... +.++++..+++|+.++.++.+++... +-.+++..||.......
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~-------- 154 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIIN-------- 154 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC--------
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccc--------
Confidence 4799999998322 33557789999999998887765432 34456666666543111
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
.....+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.+......+.......+..| ..-+
T Consensus 155 ~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R~ 225 (260)
T d1h5qa_ 155 QSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIP---------LNRF 225 (260)
T ss_dssp EEETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCT---------TSSC
T ss_pred ccccccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHHHHHHHhcCC---------CCCC
Confidence 00000112346899999999998877653 36899999999998655433333333333333222 2235
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..++|+|.+++.++.. ...-..|+++.+.++.
T Consensus 226 g~pedvA~~v~fL~S~---~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 226 AQPEEMTGQAILLLSD---HATYMTGGEYFIDGGQ 257 (260)
T ss_dssp BCGGGGHHHHHHHHSG---GGTTCCSCEEEECTTG
T ss_pred cCHHHHHHHHHHHhcc---hhCCCcCceEEECCCe
Confidence 6689999999887741 1234689999998864
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=7.5e-17 Score=152.75 Aligned_cols=230 Identities=10% Similarity=0.051 Sum_probs=154.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||++-||+++++.|+++| +.|++.+|+........++...........++..+.+|++|+++++++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 3578999999999999999999999999 59999999764211000000000001123578899999999999887754
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+|+... ..++++..+++|+.++..+.+++... +-.++|++||....
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~---------- 157 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA---------- 157 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT----------
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc----------
Confidence 5899999998322 33567889999999999988877643 34578888765332
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
.......|+.+|+..+.+.+.++.+ +|+++..+.||.+..+.........-........-. ....-
T Consensus 158 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~-----~plgR 226 (297)
T d1yxma1 158 ------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK-----IPAKR 226 (297)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG-----STTSS
T ss_pred ------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhc-----CCCCC
Confidence 1123468999999999988877633 589999999999876532111111101111111000 11224
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+..++|+|.+++.++.. ...-..|+++.+.++.
T Consensus 227 ~g~pedvA~~v~fL~Sd---~s~~iTG~~i~VDGG~ 259 (297)
T d1yxma1 227 IGVPEEVSSVVCFLLSP---AASFITGQSVDVDGGR 259 (297)
T ss_dssp CBCTHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred CcCHHHHHHHHHHHhCc---hhcCcCCcEEEeCcCh
Confidence 66789999999988741 1345789999998873
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.69 E-value=1.4e-16 Score=149.03 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=156.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||++-||+.++++|+++| ++|.+.+|+....... ..+.....++.++.+|++|+++++++++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~------~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKV------CNNIGSPDVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------HHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHH------HHHhcCCCceEEEEccCCCHHHHHHHHHH
Confidence 3468999999999999999999999999 5999999976421100 1111223467889999999999887764
Q ss_pred ------CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCC
Q 012270 84 ------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (467)
Q Consensus 84 ------~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~ 144 (467)
++|++||+||... ..++++..+++|+.++..+.+++.. .+-.++|++||.+.+..
T Consensus 76 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~------ 149 (268)
T d2bgka1 76 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA------ 149 (268)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC------
T ss_pred HHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccc------
Confidence 4899999998321 1234677899999999988887654 35568999999866411
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HH-HHHHhcCCCceEEecC
Q 012270 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PL-LVNLAKPGWTKFIIGS 217 (467)
Q Consensus 145 ~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~---~~-~~~~~~~g~~~~~~g~ 217 (467)
.......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.|...... .. .-........
T Consensus 150 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~------ 215 (268)
T d2bgka1 150 --------GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN------ 215 (268)
T ss_dssp --------CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS------
T ss_pred --------ccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc------
Confidence 0112347999999999988776533 6899999999999877543211 11 1111111110
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+..++|+|.+++.++.. ...-..|+++.+.++-
T Consensus 216 --~~gr~~~pedvA~~v~fL~S~---~s~~itGq~i~VDGG~ 252 (268)
T d2bgka1 216 --LKGTLLRAEDVADAVAYLAGD---ESKYVSGLNLVIDGGY 252 (268)
T ss_dssp --SCSCCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred --cCCCCcCHHHHHHHHHHHhCh---hhCCccCceEEECcCc
Confidence 112356789999999988741 1345789999999873
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.69 E-value=1.1e-16 Score=148.84 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=154.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||++-||++++++|.++| ++|.+.+|+.........+ .+. ....++..+.+|++|+++++++++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~--~~~--~~g~~~~~~~~Dvt~~~~v~~~~~~ 78 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLE--EIK--KVGGEAIAVKGDVTVESDVINLVQS 78 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHH--HHH--hcCCcEEEEEccCCCHHHHHHHHHH
Confidence 3478999999999999999999999999 5999999875311000000 000 113467889999999999887764
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCC-CeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v-~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||... +.++++..+++|+.++.++.+++. +.+- .++|++||.+...
T Consensus 79 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~-------- 150 (261)
T d1geea_ 79 AIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-------- 150 (261)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--------
T ss_pred HHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc--------
Confidence 5899999999432 345678899999999988877654 3343 3588999986541
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCCCc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGEN 220 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g~~ 220 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.|...... +.......+..|
T Consensus 151 -------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p--------- 214 (261)
T d1geea_ 151 -------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP--------- 214 (261)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT---------
T ss_pred -------cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCC---------
Confidence 1123468999999999888776532 6899999999998654321111 112222222221
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++.
T Consensus 215 l~R~~~pediA~~v~fL~S~---~s~~itG~~i~vDGG~ 250 (261)
T d1geea_ 215 MGYIGEPEEIAAVAAWLASS---EASYVTGITLFADGGM 250 (261)
T ss_dssp TSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred CCCCCCHHHHHHHHHHHhCc---hhcCCcCCeEEECCCe
Confidence 23456789999999988741 1234689999998874
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.69 E-value=1.2e-16 Score=146.90 Aligned_cols=218 Identities=15% Similarity=0.077 Sum_probs=155.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+.+++.|+++| ++|++.+|+........ .+ ...++.++++|++|+++++++++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~------~~--~~~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAV------AA--LEAEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHH------HT--CCSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH------HH--cCCceEEEEecCCCHHHHHHHHHHH
Confidence 368999999999999999999999999 59999999875211110 11 13467889999999999877654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+|+... +.+++...+++|+.++.++.+++... +-+.++.+||.+..
T Consensus 74 ~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~------------- 140 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL------------- 140 (241)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-------------
T ss_pred HHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-------------
Confidence 4899999998321 33557789999999999999987765 23455555554332
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 226 (467)
+......|+.+|+..|.+.+.++.+ +|+++.++.||.+=.+......+.......+..+ ...+..
T Consensus 141 ---~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p---------~~r~~~ 208 (241)
T d2a4ka1 141 ---GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP---------LGRAGR 208 (241)
T ss_dssp ---CHHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTST---------TCSCBC
T ss_pred ---cccCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCC---------CCCCcC
Confidence 1123457999999999998887533 5799999999998554333333333333333222 234667
Q ss_pred hhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 227 v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
++|+|++++.++.. ...-..|+++.+.++..
T Consensus 209 p~dva~~v~fL~S~---~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 209 PEEVAQAALFLLSE---ESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhcc---hhCCCcCceEEeCCCcc
Confidence 99999999988841 12447899999988743
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.69 E-value=1.1e-16 Score=148.71 Aligned_cols=218 Identities=12% Similarity=0.052 Sum_probs=154.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
+|.+|||||++-||++++++|+++| +.|.+.+|++.......++ +. ....++..+.+|++|+++++++++
T Consensus 2 gKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~---l~--~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKE---LR--EAGVEADGRTCDVRSVPEIEALVAAVVE 75 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999 5999999976421110000 11 113468899999999999887764
Q ss_pred ---CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC------CCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~------~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.++++..+++|+.++.++.+++... +-.++|++||...+.
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~---------- 145 (257)
T d2rhca1 76 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ---------- 145 (257)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS----------
T ss_pred HhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc----------
Confidence 4899999999322 34557789999999999999988642 445899999986641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-----------HHHHHHHhcCCCceE
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPGWTKF 213 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~-----------~~~~~~~~~~g~~~~ 213 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.|..... .+.....+.+..
T Consensus 146 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~--- 217 (257)
T d2rhca1 146 -----GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARV--- 217 (257)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS---
T ss_pred -----ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcC---
Confidence 1123468999999999988876533 579999999998843321110 111222222222
Q ss_pred EecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+..-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 218 ------PlgR~~~pedia~~v~fL~S~---~s~~itG~~i~vDGG 253 (257)
T d2rhca1 218 ------PIGRYVQPSEVAEMVAYLIGP---GAAAVTAQALNVCGG 253 (257)
T ss_dssp ------TTSSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTT
T ss_pred ------CCCCCcCHHHHHHHHHHHhCc---hhcCCcCceEEECcC
Confidence 123466799999999988731 134578999999886
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.68 E-value=1.3e-16 Score=148.05 Aligned_cols=220 Identities=11% Similarity=0.030 Sum_probs=154.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|++|||||++-||++++++|+++| ++|.+.+|++.......++ +. .....+..+.+|++|.++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~---~~--~~~~~~~~~~~D~s~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEI---WR--EKGLNVEGSVCDLLSRTERDKLMQTV 77 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCCceEEEeecCCHHHHHHHHHHH
Confidence 468999999999999999999999999 5999999986421000000 10 123457788999999998876643
Q ss_pred -----C-CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----G-ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~-~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
+ .|+++|+|+... +.+++...+++|+.++..+.+++... +..++|++||.....
T Consensus 78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~--------- 148 (258)
T d1ae1a_ 78 AHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS--------- 148 (258)
T ss_dssp HHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS---------
T ss_pred HHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc---------
Confidence 2 799999999322 34567889999999999988876643 567999999987641
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc------HHHHHHHhcCCCceEEecC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL------VPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~------~~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+..+..... .......+....
T Consensus 149 ------~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~------- 215 (258)
T d1ae1a_ 149 ------ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT------- 215 (258)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS-------
T ss_pred ------ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcC-------
Confidence 1123568999999999988877533 589999999999976643221 112222222211
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+...+...+|+|.+++.++.. +..-..|+.+.+.++
T Consensus 216 --plgR~~~pediA~~v~fL~S~---~s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 216 --PMGRAGKPQEVSALIAFLCFP---AASYITGQIIWADGG 251 (258)
T ss_dssp --TTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred --CCCCCcCHHHHHHHHHHHhCh---hhCCCcCcEEEeCCC
Confidence 122367899999999988831 134568999988886
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.68 E-value=7.7e-17 Score=148.41 Aligned_cols=219 Identities=15% Similarity=0.075 Sum_probs=152.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
+.++||||++-||++++++|+++| ++|.+.+++.........+ .+. ....++..+.+|++|+++++++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G-a~V~i~~~~~~~~~~~~~~--~~~--~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSK--QIE--AYGGQAITFGGDVSKEADVEAMMKTAIDA 76 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HHTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHH--HcCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 379999999999999999999999 5898875543211000000 000 013467889999999999887764
Q ss_pred --CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
++|++||+|+... +.++++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 77 ~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~------------- 143 (244)
T d1edoa_ 77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI------------- 143 (244)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-------------
T ss_pred cCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC-------------
Confidence 4899999999322 3456788999999999998887654 3556999999987652
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccch
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 227 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+.................| ..-+..+
T Consensus 144 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R~~~p 212 (244)
T d1edoa_ 144 --GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP---------LGRTGQP 212 (244)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCT---------TCSCBCH
T ss_pred --CCCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCC---------CCCCcCH
Confidence 1223468999999999988877643 6899999999988544222222333333333222 2346678
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+|+|.+++.++.. +...-..|+++.+.+|
T Consensus 213 ~dvA~~v~fLa~S--~~a~~itG~~i~vdGG 241 (244)
T d1edoa_ 213 ENVAGLVEFLALS--PAASYITGQAFTIDGG 241 (244)
T ss_dssp HHHHHHHHHHHHC--SGGGGCCSCEEEESTT
T ss_pred HHHHHHHHHHHCC--chhcCCcCCeEEeCCC
Confidence 9999999987530 0123468999988886
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.68 E-value=1e-16 Score=148.38 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=151.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| +.|.+.+|+...... +.+.. ..+...+.+|++|+++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~-------~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~ 74 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQ-------LAAEL-GERSMFVRHDVSSEADWTLVMAAV 74 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHH-------HHHHH-CTTEEEECCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHHh-CCCeEEEEeecCCHHHHHHHHHHH
Confidence 467999999999999999999999999 599999997642110 01111 3467788999999988877654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+.|++||+||... +.++++..+++|+.++..+.+++... +-.++|++||.+...
T Consensus 75 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~----------- 143 (253)
T d1hxha_ 75 QRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------- 143 (253)
T ss_dssp HHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS-----------
T ss_pred HHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc-----------
Confidence 4899999999322 33557889999999998888876643 225899999986641
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc---eEEecCCCc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFIIGSGEN 220 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~---~~~~g~g~~ 220 (467)
+......|+.+|+..+.+.+.++.+ +++++..+-||.+-.+. .... ...+.. ..-......
T Consensus 144 ----~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~----~~~~---~~~~~~~~~~~~~~~~~~ 212 (253)
T d1hxha_ 144 ----PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM----MQAS---LPKGVSKEMVLHDPKLNR 212 (253)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH----HHHH---SCTTCCHHHHBCBTTTBT
T ss_pred ----CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHh----HHhh---CcchhhHHHHHhCccccc
Confidence 1233468999999999888776532 46999999999885431 1111 101000 000000111
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.-.+..++|+|.+++.++.. ...-..|+.+++.++
T Consensus 213 ~gr~~~pedvA~~v~fL~S~---~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 213 AGRAYMPERIAQLVLFLASD---ESSVMSGSELHADNS 247 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSG---GGTTCCSCEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHhCh---hhCCCcCcEEEECcc
Confidence 22466789999999988741 134468999999876
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.68 E-value=2e-16 Score=146.95 Aligned_cols=221 Identities=11% Similarity=0.092 Sum_probs=143.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| +.|.+.+|+........++ +. ....++..+.+|++|+++++++++
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~l~~~~~~---~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSK---WQ--KKGFQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCceEEEeccCCCHHHHHHHHHHH
Confidence 368999999999999999999999999 5999999976421100000 00 123468899999999988776542
Q ss_pred -----C-CCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 -----G-ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 -----~-~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
+ +|++||+||.. .+.++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~--------- 150 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV--------- 150 (259)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---------------
T ss_pred HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc---------
Confidence 3 79999999932 23466788999999999988887654 3566999999986541
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEecCCCccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~-~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|...+.+.+.++.+ +|+++..+-||.+-.|......+ .......+.. ...
T Consensus 151 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~---------pl~ 215 (259)
T d1xq1a_ 151 ------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRK---------PLG 215 (259)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC--------------------------------
T ss_pred ------cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhCC---------CCC
Confidence 1233568999999999888776533 68999999999886553322111 1111111111 123
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+..++|+|.+++.++.. ...-..|+.+.+.++-
T Consensus 216 R~~~pedvA~~v~fL~S~---~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 216 RFGEPEEVSSLVAFLCMP---AASYITGQTICVDGGL 249 (259)
T ss_dssp --CCGGGGHHHHHHHTSG---GGTTCCSCEEECCCCE
T ss_pred CCcCHHHHHHHHHHHhCc---hhcCCcCcEEEeCCCE
Confidence 456789999999987731 1345678888888763
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.68 E-value=5.7e-17 Score=150.70 Aligned_cols=220 Identities=12% Similarity=0.066 Sum_probs=153.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| ++|.+.+|+........++ +. ....++..+.+|++|+++++++++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~---~~--~~g~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQ---WR--SKGFKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCCceEEEeeCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 5999999976421100000 00 113467889999999998776642
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... +.++++..+++|+.++..+.+++.. .+-.++|++||.....
T Consensus 80 ~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~--------- 150 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL--------- 150 (259)
T ss_dssp HHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS---------
T ss_pred HHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc---------
Confidence 3799999999322 3355778999999999888887653 3456899999986541
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCceEEecCC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~-----~~~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+.... -............|
T Consensus 151 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~p------- 217 (259)
T d2ae2a_ 151 ------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA------- 217 (259)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST-------
T ss_pred ------ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCC-------
Confidence 1223468999999999988877643 58999999999885432110 01112222222221
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 218 --l~R~g~pedvA~~v~fL~S~---~s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 218 --LRRMGEPKELAAMVAFLCFP---AASYVTGQIIYVDGG 252 (259)
T ss_dssp --TCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred --CCCCcCHHHHHHHHHHHhCc---hhCCCcCcEEEECCC
Confidence 22356689999999987741 123468999998886
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.67 E-value=3.1e-16 Score=145.80 Aligned_cols=219 Identities=16% Similarity=0.089 Sum_probs=153.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||+++++.|+++| +.|.+.+|+........+. +. ....++..+.+|++|+++++++++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~---~~--~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEAS---VR--EKGVEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--TTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999 5999999976421100000 11 113468889999999998887764
Q ss_pred ----CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+||... +.+++...+++|+.++.++.+++.. .+-.++|++||.+.+.
T Consensus 78 ~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~---------- 147 (260)
T d1zema1 78 RDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK---------- 147 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS----------
T ss_pred HHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc----------
Confidence 4899999998332 2345678999999999998887654 3456999999987651
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH----------------HHHHHHhcC
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV----------------PLLVNLAKP 208 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~----------------~~~~~~~~~ 208 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.|-.+...... ..+...+..
T Consensus 148 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T d1zema1 148 -----GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIG 222 (260)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHH
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHh
Confidence 1123468999999999888776533 5899999999998544211101 111111111
Q ss_pred CCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 209 g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.. +..-+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 223 ~~---------Pl~R~g~pedvA~~v~fL~S~---~s~~itG~~i~VDGG 260 (260)
T d1zema1 223 SV---------PMRRYGDINEIPGVVAFLLGD---DSSFMTGVNLPIAGG 260 (260)
T ss_dssp TS---------TTSSCBCGGGSHHHHHHHHSG---GGTTCCSCEEEESCC
T ss_pred cC---------CCCCCcCHHHHHHHHHHHhCc---hhcCccCCeEEeCCC
Confidence 11 123456789999999988741 124567888888764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.66 E-value=1.4e-16 Score=147.70 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=151.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-----
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 83 (467)
|.++||||++-||++++++|+++| +.|.+.+|++.......++ +. ....++..+.+|++|+++++++++
T Consensus 2 KValITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~---i~--~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASE---IN--QAGGHAVAVKVDVSDRDQVFAAVEQARKT 75 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999999 5999999976421100000 11 113468889999999999887754
Q ss_pred --CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CC-CCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~-v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++|++||+||... +.++++..+++|+.++.++.+++.. .+ -.++|++||.+.+.
T Consensus 76 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------ 143 (255)
T d1gega_ 76 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------ 143 (255)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred hCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------
Confidence 4899999999322 3355788999999999999887643 23 45799999986541
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc--CCCc----eEEecCCCc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK--PGWT----KFIIGSGEN 220 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~--~g~~----~~~~g~g~~ 220 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.| +...+..... .+.. ..-.....+
T Consensus 144 ---~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 216 (255)
T d1gega_ 144 ---GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP----MWAEIDRQVSEAAGKPLGYGTAEFAKRIT 216 (255)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSH----HHHHHHHHHHHHHTCCTTHHHHHHHTTCT
T ss_pred ---cCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccCh----HHhhhhhhhHhhhcccchhHHHHHHhcCC
Confidence 223346899999999988877753 36899999999988433 2222211110 0000 000001112
Q ss_pred cccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 221 ~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+..++|+|.+++.++.. ...-..|+.+.+.+|-
T Consensus 217 l~R~~~peevA~~v~fL~S~---~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 217 LGRLSEPEDVAACVSYLASP---DSDYMTGQSLLIDGGM 252 (255)
T ss_dssp TCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSS
T ss_pred CCCCcCHHHHHHHHHHHhCc---hhCCccCcEEEecCCE
Confidence 23467799999999988741 1244689999998874
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=6.4e-16 Score=141.37 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=150.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC-HHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~ 85 (467)
++|++|||||++-||+++++.|+++| ++|.+.+|+... ....+.+++.+|+++ .+.+.+.+.++
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~G-a~V~~~~r~~~~--------------l~~~~~~~~~~Dv~~~~~~~~~~~g~i 67 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNEEL--------------LKRSGHRYVVCDLRKDLDLLFEKVKEV 67 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH--------------HHHTCSEEEECCTTTCHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH--------------HHhcCCcEEEcchHHHHHHHHHHhCCC
Confidence 57899999999999999999999999 599999997641 111245678899986 34455556679
Q ss_pred CEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCCcccCC
Q 012270 86 STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (467)
Q Consensus 86 D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (467)
|++||+||... +.++++..+++|+.++..+.+++. +.+-.++|++||..... +.
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~---------------~~ 132 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS---------------PI 132 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------CC
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc---------------cc
Confidence 99999998322 335567889999999888877664 34556899999986541 22
Q ss_pred CCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEecCCCccccccchhHH
Q 012270 155 KFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (467)
Q Consensus 155 ~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~-~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dv 230 (467)
.....|+.+|+..+.+.+.++. .+|+++..+.||.+-.+...... ........+.. ....+..++|+
T Consensus 133 ~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~---------pl~R~~~pedi 203 (234)
T d1o5ia_ 133 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI---------PMRRMAKPEEI 203 (234)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS---------TTSSCBCHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcC---------CCCCCcCHHHH
Confidence 3456899999999888777653 26899999999988655322111 11222222222 22346779999
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 231 AHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 231 a~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
|.+++.++.. ...-..|+++.+.++
T Consensus 204 A~~v~fL~S~---~s~~itG~~i~vDGG 228 (234)
T d1o5ia_ 204 ASVVAFLCSE---KASYLTGQTIVVDGG 228 (234)
T ss_dssp HHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred HHHHHHHhCh---hhcCCcCcEEEECcc
Confidence 9999987741 134468999999887
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=4.8e-15 Score=140.40 Aligned_cols=249 Identities=14% Similarity=0.086 Sum_probs=164.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcC--CCCCeEEEEecCCCHHHHHHHHh-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
++|+++||||++-||+++++.|+++| +.|.+.+|+.......... ....+.. .........+|+.|.++.++.++
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~G-a~Vvi~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 83 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGS-SAADKVVEEIRRRGGKAVANYDSVEAGEKLVKT 83 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCS-HHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchhhhhhhhH-HHHHHHHHHHhhcccccccccchHHHHHHHHHH
Confidence 68999999999999999999999999 5999999876521111000 0000000 01123456778888766555443
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+||... +.++++..+++|+.++.++.+++.. .+-.++|++||.+.+.
T Consensus 84 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~--------- 154 (302)
T d1gz6a_ 84 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY--------- 154 (302)
T ss_dssp HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred HHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC---------
Confidence 5899999999322 3356788999999999998887654 3556999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+-|+.+--+... .++ +....
T Consensus 155 ------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~-~~~------------------~~~~~ 209 (302)
T d1gz6a_ 155 ------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTET-VMP------------------EDLVE 209 (302)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGG-GSC------------------HHHHH
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhh-cCc------------------HhhHh
Confidence 1123468999999999888776533 6899999999866222111 111 12234
Q ss_pred ccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC-------------------CCcCHHHHHHHHHHHcCCCCCCccCC
Q 012270 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL-------------------EPIKFWDFLSIILEGLGYQRPFIKLP 284 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~-------------------~~~s~~el~~~i~~~~g~~~~~~~ip 284 (467)
.+.++|+|.+++.++.. .....|+++.+.++ .+.|..++++.+.+....... ..|
T Consensus 210 ~~~PedvA~~v~fL~S~----~a~itG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~t~e~i~~~~~~i~d~~~~--~~p 283 (302)
T d1gz6a_ 210 ALKPEYVAPLVLWLCHE----SCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWVKICDFSNA--SKP 283 (302)
T ss_dssp HSCGGGTHHHHHHHTST----TCCCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHHHHHHTHHHHTCCTTC--BCC
T ss_pred cCCHHHHHHHHHHHcCC----CcCCCCcEEEeCCCceeEEEEeecCcccccCCCCCCCHHHHHHHHHHHhCcccC--cCC
Confidence 45579999999887631 23457777766543 346788888888887765432 235
Q ss_pred hHHHHHHHHHHHH
Q 012270 285 TGVVWYIILLVKW 297 (467)
Q Consensus 285 ~~~~~~~~~~~~~ 297 (467)
.........+.+.
T Consensus 284 ~~~~~~~~~~~~~ 296 (302)
T d1gz6a_ 284 KSIQESTGGIIEV 296 (302)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5444444444433
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.4e-15 Score=140.02 Aligned_cols=217 Identities=16% Similarity=0.065 Sum_probs=156.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..+|+++||||++-||+++++.|+++| ++|++.+|++.. +.+.....++....+|+.+.+..+...+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G-~~Vi~~~r~~~~----------l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 72 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINESK----------LQELEKYPGIQTRVLDVTKKKQIDQFANEV 72 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----------HGGGGGSTTEEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHH----------HHHHHhccCCceeeeecccccccccccccc
Confidence 368999999999999999999999999 599999997642 2222334678889999999887776654
Q ss_pred -CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|++||+|+... +.+++...+++|+.++..+.+++... +-.++|++||...- .
T Consensus 73 ~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~---~----------- 138 (245)
T d2ag5a1 73 ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS---V----------- 138 (245)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT---T-----------
T ss_pred ccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc---c-----------
Confidence 5899999999322 33557789999999999998877643 45689999986431 0
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEecCCCccc
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~------~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
.+......|+.+|+..+.+++.++.+ +|+++..+.||.+-.|.... ............. +..
T Consensus 139 ~~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~---------pl~ 209 (245)
T d2ag5a1 139 KGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ---------KTG 209 (245)
T ss_dssp BCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC---------TTS
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcC---------CCC
Confidence 02244568999999999988887643 68999999999886543211 0111222222211 223
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.+..++|+|.++..++.. +..-..|+++.+.++.
T Consensus 210 R~~~pedva~~v~fL~s~---~s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 210 RFATAEEIAMLCVYLASD---ESAYVTGNPVIIDGGW 243 (245)
T ss_dssp SCEEHHHHHHHHHHHHSG---GGTTCCSCEEEECTTG
T ss_pred CCcCHHHHHHHHHHHhCh---hhCCCcCceEEeCCCc
Confidence 466789999999998851 1234689999998863
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.1e-16 Score=145.47 Aligned_cols=203 Identities=13% Similarity=0.030 Sum_probs=140.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|.+|||||++-||.++++.|+++| +.|++.+|++.......++ +.......++..+.+|++|+++++++++
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAE---CKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 5999999976421110000 1111223468889999999998877654
Q ss_pred ----CCCEEEEcccCC-------CCCCChhhHHHhhHHHHHHHHHHHH----hCC--CCeEEEEcCccccccCCCCCCCC
Q 012270 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECK--VRRLVYNSTADVVFDGSHDIHNG 146 (467)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~nv~g~~~ll~aa~----~~~--v~r~v~~SS~~vyg~~~~~~~~~ 146 (467)
++|++||+|+.. .+.++++..+++|+.++.++.+++. +.+ -.++|++||.+.+...
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------- 157 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------- 157 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC-------
Confidence 589999999932 2345578899999999888776653 333 3589999998754110
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhc-----CCCCceEEEEeCCCcccCCCCCcHHHH----HHHhcCCCceEEecC
Q 012270 147 DETLTCCWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDTQLVPLL----VNLAKPGWTKFIIGS 217 (467)
Q Consensus 147 ~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~-----~~~g~~~~ilRp~~i~G~~~~~~~~~~----~~~~~~g~~~~~~g~ 217 (467)
|......|+.+|+..+.+.+.++ ..+|+++..+-||.+=.+ +...+ .......
T Consensus 158 ------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~----~~~~~~~~~~~~~~~~-------- 219 (257)
T d1xg5a_ 158 ------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ----FAFKLHDKDPEKAAAT-------- 219 (257)
T ss_dssp ------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS----HHHHHTTTCHHHHHHH--------
T ss_pred ------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCCh----hhhhcChhhHHHHHhc--------
Confidence 22334579999999999987665 347899999999876322 11111 0111110
Q ss_pred CCccccccchhHHHHHHHHHHH
Q 012270 218 GENMSDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~ 239 (467)
.....++.++|+|++++.++.
T Consensus 220 -~~~~r~~~pedvA~~v~fL~s 240 (257)
T d1xg5a_ 220 -YEQMKCLKPEDVAEAVIYVLS 240 (257)
T ss_dssp -HC---CBCHHHHHHHHHHHHH
T ss_pred -CCCCCCcCHHHHHHHHHHHhC
Confidence 112346779999999998886
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.64 E-value=1.2e-15 Score=141.07 Aligned_cols=217 Identities=12% Similarity=0.030 Sum_probs=149.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCC-CHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~-- 83 (467)
++|++|||||++-||..++++|+++| .+|+++.|..... +....+.......++.++.+|+. +.++++++++
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G-~~vii~~r~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRN-LKNFVILDRVENP----TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTC-CSEEEEEESSCCH----HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCcccH----HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHH
Confidence 68999999999999999999999999 5888887765411 00000111223457888999997 6556655543
Q ss_pred -----CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhC-------CCCeEEEEcCccccccCCCCCCCCCCCcc
Q 012270 84 -----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~-------~v~r~v~~SS~~vyg~~~~~~~~~~E~~p 151 (467)
++|++||+||.. ..++++.++++|+.|+.++.+++... .-.++|++||...+.
T Consensus 79 ~~~~g~iDilvnnAG~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~-------------- 143 (254)
T d1sbya1 79 FDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-------------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS--------------
T ss_pred HHHcCCCCEEEeCCCCC-CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc--------------
Confidence 589999999954 45778999999999999998877653 135799999987651
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE-EecCCCccccccch
Q 012270 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF-IIGSGENMSDFTYV 227 (467)
Q Consensus 152 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~-~~g~g~~~~~~i~v 227 (467)
+......|+.+|+....+.+.++.+ +|+++..+.||.|..+- .+......... ........+.....
T Consensus 144 -~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (254)
T d1sbya1 144 -AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL--------VHTFNSWLDVEPRVAELLLSHPTQTS 214 (254)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH--------HHSCCCGGGSCTTHHHHHTTSCCEEH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCcc--------ccccccchhHHHHHHhccccCCCCCH
Confidence 2234568999999999888887643 48999999999986541 11111000000 00000001123458
Q ss_pred hHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 228 ~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
+++|++++.+++ ....|+++.+.++
T Consensus 215 e~va~~~~~~~~------~~~tG~vi~vdgG 239 (254)
T d1sbya1 215 EQCGQNFVKAIE------ANKNGAIWKLDLG 239 (254)
T ss_dssp HHHHHHHHHHHH------HCCTTCEEEEETT
T ss_pred HHHHHHHHHhhh------CCCCCCEEEECCC
Confidence 999999998887 3458889988887
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=6.3e-16 Score=143.49 Aligned_cols=221 Identities=13% Similarity=0.088 Sum_probs=150.7
Q ss_pred CCCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 5 EAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 5 ~~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
..++|+++||||+| -||++++++|+++| ++|.+.+|+....... + .......+...+.+|++|++++++++
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~-~-----~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEA-E-----KLAEALGGALLFRADVTQDEELDALF 77 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSGGGHHHH-H-----HHHHHTTCCEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHH-H-----HhhhccCcccccccccCCHHHHHHHH
Confidence 35789999999997 69999999999999 5999988875411000 0 00111245678999999999888775
Q ss_pred h-------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCC
Q 012270 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~ 142 (467)
+ ++|++||+|+... ...++...+++|+.++..+.+++... .-.++|++||.....
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~----- 152 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----- 152 (256)
T ss_dssp HHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----
T ss_pred HHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-----
Confidence 4 4899999998321 12345668999999999999887654 124799999986541
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+..+..... .........+..|
T Consensus 153 ----------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~p------ 216 (256)
T d1ulua_ 153 ----------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAP------ 216 (256)
T ss_dssp ----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHST------
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCC------
Confidence 2233568999999999988877643 689999999999876643321 1223333222222
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+..++|+|.+++.++.. ...-..|+++.+.++.
T Consensus 217 ---l~R~~~pedvA~~v~fL~S~---~s~~itG~~i~VDGG~ 252 (256)
T d1ulua_ 217 ---LRRNITQEEVGNLGLFLLSP---LASGITGEVVYVDAGY 252 (256)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred ---CCCCcCHHHHHHHHHHHhCc---hhCCccCCeEEECcCE
Confidence 12356689999999988741 1234689999998874
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.63 E-value=7.5e-16 Score=144.30 Aligned_cols=222 Identities=12% Similarity=0.089 Sum_probs=151.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+++||||++-||+++++.|+++| ++|.+.+|+........++ +.+. ....++..+.+|++|+++++++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~---i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQ---ILKAGVPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 68999999999999999999999999 5999999976421100000 1111 122468899999999998877654
Q ss_pred -----CCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC
Q 012270 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+||... +.++++..+++|+.++..+.+++... +-.+++++||.+...
T Consensus 79 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~-------- 150 (274)
T d1xhla_ 79 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ-------- 150 (274)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS--------
T ss_pred HHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc--------
Confidence 4899999998321 12346789999999999888877643 445777777764331
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC---------cHHHHHHHhcCCCceE
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ---------LVPLLVNLAKPGWTKF 213 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~---------~~~~~~~~~~~g~~~~ 213 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+--|.... -...+........
T Consensus 151 -------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~i--- 220 (274)
T d1xhla_ 151 -------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECI--- 220 (274)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC---
T ss_pred -------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCC---
Confidence 1123457999999999888766532 68999999999986542110 0111121111211
Q ss_pred EecCCCccccccchhHHHHHHHHHHH-HhccccccCCCcEEEEcCCC
Q 012270 214 IIGSGENMSDFTYVENVAHAHVCAAE-ALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 214 ~~g~g~~~~~~i~v~Dva~a~~~al~-~~~~~~~~~~g~~yni~~~~ 259 (467)
+..-+..++|+|.+++.++. .. ..-..|+++.+.++.
T Consensus 221 ------PlgR~g~pediA~~v~fL~S~d~---s~~itG~~i~vDGG~ 258 (274)
T d1xhla_ 221 ------PVGHCGKPEEIANIIVFLADRNL---SSYIIGQSIVADGGS 258 (274)
T ss_dssp ------TTSSCBCHHHHHHHHHHHHCHHH---HTTCCSCEEEESTTG
T ss_pred ------CCCCCcCHHHHHHHHHHHcCCcc---ccCccCcEEEeCcCH
Confidence 12345679999999998773 00 234789999999874
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.63 E-value=5.9e-16 Score=144.30 Aligned_cols=224 Identities=9% Similarity=0.046 Sum_probs=148.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.++|.++||||++-||++++++|+++| ++|.+.+|+........++ +... ....++..+.+|++|+++++++++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~ 78 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQ---ILAAGVSEQNVNSVVADVTTDAGQDEILST 78 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCcCceEEEEccCCCHHHHHHHHHH
Confidence 368999999999999999999999999 5999999976421100000 1011 123468899999999999887764
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccc-cccCCCC
Q 012270 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADV-VFDGSHD 142 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~v-yg~~~~~ 142 (467)
++|++||+||... +.++++..+++|+.++.++.+++... +-.++|.++|... +.
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~----- 153 (264)
T d1spxa_ 79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH----- 153 (264)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS-----
T ss_pred HHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccc-----
Confidence 5899999998321 22457789999999999888877653 2346666666532 20
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGW 210 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~---------~~~~~~~~~~g~ 210 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+--+..... ............
T Consensus 154 ----------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (264)
T d1spxa_ 154 ----------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV 223 (264)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHC
T ss_pred ----------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcC
Confidence 112345799999999988877653 2689999999999865532210 001111111111
Q ss_pred ceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 211 ~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+..-+..++|+|.+++.++... ...-..|+++.+.++.
T Consensus 224 ---------Pl~R~g~pedvA~~v~fL~S~~--~s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 224 ---------PAGVMGQPQDIAEVIAFLADRK--TSSYIIGHQLVVDGGS 261 (264)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTG
T ss_pred ---------CCCCCcCHHHHHHHHHHHhCCc--ccCCccCceEEeCCCh
Confidence 1223566899999999877310 0123689999998864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.62 E-value=1.4e-15 Score=142.67 Aligned_cols=215 Identities=16% Similarity=0.097 Sum_probs=148.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh---
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--- 83 (467)
++|+++||||++-||+++++.|+++| ++|.+.+|+...... +... ...++..+.+|++|.++++++++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~-------~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKSAERLAE-------LETD-HGDNVLGIVGDVRSLEDQKQAASRCV 74 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHH-------HHHH-HGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHH-------HHHH-cCCCeeEEecccccHHHHHHHHHHHH
Confidence 68999999999999999999999999 599999997642100 0000 12468889999999998877654
Q ss_pred ----CCCEEEEcccCCCC--------C----CChhhHHHhhHHHHHHHHHHHHh----CCCCeEEEEcCccccccCCCCC
Q 012270 84 ----GASTVFYVDATDLN--------T----DDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 ----~~D~Vih~aa~~~~--------~----~~~~~~~~~nv~g~~~ll~aa~~----~~v~r~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+||.... . .+++..+++|+.++..+.+++.. .+ .++|++||...+.
T Consensus 75 ~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~------ 147 (276)
T d1bdba_ 75 ARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFY------ 147 (276)
T ss_dssp HHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTS------
T ss_pred HHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhcc------
Confidence 58999999983211 1 12678899999999888877653 33 5899999875431
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcH----------HHHHHHhcCCCc
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLV----------PLLVNLAKPGWT 211 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~--~g~~~~ilRp~~i~G~~~~~~~----------~~~~~~~~~g~~ 211 (467)
+......|+.+|+..+.+.+.++.+ .++++..+.||.|--+...... ..+...+.+..|
T Consensus 148 ---------~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 218 (276)
T d1bdba_ 148 ---------PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLP 218 (276)
T ss_dssp ---------TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCT
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCC
Confidence 1123457999999999887776532 2399999999998654221110 112222222222
Q ss_pred eEEecCCCccccccchhHHHHHHHHHH-HHhccccccCCCcEEEEcCC
Q 012270 212 KFIIGSGENMSDFTYVENVAHAHVCAA-EALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 212 ~~~~g~g~~~~~~i~v~Dva~a~~~al-~~~~~~~~~~~g~~yni~~~ 258 (467)
..-+..++|+|.+++.++ +.- ..-..|+.+++.++
T Consensus 219 ---------lgR~g~peeva~~v~fL~S~~~---a~~itG~~i~VDGG 254 (276)
T d1bdba_ 219 ---------IGRMPEVEEYTGAYVFFATRGD---AAPATGALLNYDGG 254 (276)
T ss_dssp ---------TSSCCCGGGGSHHHHHHHCHHH---HTTCSSCEEEESSS
T ss_pred ---------CCCCcCHHHHHHHHHHHcCCcc---cCCeeCcEEEECcC
Confidence 223556899999988765 210 23478999999887
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.62 E-value=3.4e-15 Score=139.63 Aligned_cols=225 Identities=11% Similarity=0.039 Sum_probs=149.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
.++|+++||||++-||+++++.|.++| ++|.+.+|+........+. +.+. ....++..+.+|++|+++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 78 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQI---ILKSGVSEKQVNSVVADVTTEDGQDQIINS 78 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HHhcCCCCCceEEEEccCCCHHHHHHHHHH
Confidence 368999999999999999999999999 5999999976421000000 1111 123468899999999998877664
Q ss_pred ------CCCEEEEcccCCCC-----------CCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCc-cccccCCCC
Q 012270 84 ------GASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTA-DVVFDGSHD 142 (467)
Q Consensus 84 ------~~D~Vih~aa~~~~-----------~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~-~vyg~~~~~ 142 (467)
++|++||+||.... ..++...+++|+.++.++.+++... +-.++|.++|. +.. .
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~--~--- 153 (272)
T d1xkqa_ 79 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP--Q--- 153 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS--S---
T ss_pred HHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc--c---
Confidence 58999999993211 1136778899999999988877653 22356666553 322 0
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCC------cHHH---HHHHhcCCC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ------LVPL---LVNLAKPGW 210 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~------~~~~---~~~~~~~g~ 210 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.|-.+.... .... .........
T Consensus 154 ----------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (272)
T d1xkqa_ 154 ----------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECI 223 (272)
T ss_dssp ----------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC
T ss_pred ----------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCC
Confidence 112346799999999988877753 368999999999885442110 0011 111111111
Q ss_pred ceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 211 ~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
+..-+..++|+|.+++.++..- ...-..|+++.+.++..
T Consensus 224 ---------PlgR~g~pediA~~v~fL~S~~--as~~iTG~~i~vDGG~~ 262 (272)
T d1xkqa_ 224 ---------PIGAAGKPEHIANIILFLADRN--LSFYILGQSIVADGGTS 262 (272)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTGG
T ss_pred ---------CCCCCcCHHHHHHHHHHHhCcc--hhCCccCeEEEeCcCHH
Confidence 1234667999999999887310 01236899999988743
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.61 E-value=3.5e-15 Score=136.77 Aligned_cols=192 Identities=12% Similarity=0.141 Sum_probs=137.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc------EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.||||||++-||+++++.|.++|.. .|.+.+|+........++ +. ....++..+.+|++|+++++++++
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~---~~--~~g~~~~~~~~Dvt~~~~v~~~~~ 77 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE---CR--AEGALTDTITADISDMADVRRLTT 77 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH---HH--TTTCEEEEEECCTTSHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH---HH--hcCCcEEEEEecCCCHHHHHHHHH
Confidence 4799999999999999999999942 288888876421000000 00 123467889999999999887664
Q ss_pred -------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC----CCCeEEEEcCccccccCCCCCCC
Q 012270 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~----~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+|+... +.++++..+++|+.|+..+.+++... +-.++|++||.+.+.
T Consensus 78 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~-------- 149 (240)
T d2bd0a1 78 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK-------- 149 (240)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC--------
Confidence 4899999999332 34567889999999999888776643 556899999987651
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.+|+..+.+.+.++ ..+|+++..+.||.+--+..... +.+...
T Consensus 150 -------~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~------------------~~~~~~ 204 (240)
T d2bd0a1 150 -------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------DDEMQA 204 (240)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------CSTTGG
T ss_pred -------CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc------------------CHhhHh
Confidence 11234689999998888877764 23789999999998855422110 011123
Q ss_pred cccchhHHHHHHHHHHH
Q 012270 223 DFTYVENVAHAHVCAAE 239 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~ 239 (467)
.+..++|+|++++.++.
T Consensus 205 ~~~~PedvA~~v~~l~s 221 (240)
T d2bd0a1 205 LMMMPEDIAAPVVQAYL 221 (240)
T ss_dssp GSBCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHc
Confidence 45678999999999886
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.5e-16 Score=141.47 Aligned_cols=194 Identities=12% Similarity=0.019 Sum_probs=140.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
..++.++||||++-||++++++|.++| ++|.+.+|+........++ +. ...+++..+.+|++|++++.++++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~---~~--~~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAK---CK--GLGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 6999999976421101000 11 123578899999999999887764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
++|++||+|+... ..+.++.++++|+.|+.++.+++. +.+-.++|++||...+.
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~---------- 148 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV---------- 148 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC----------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC----------
Confidence 4899999999432 123456899999999998887655 44567899999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC------CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI------DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~------~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~ 221 (467)
+......|+.+|+..+.+.+.++.+ .|++++.+.||.+--+..... . ...
T Consensus 149 -----~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~------------~-------~~~ 204 (244)
T d1yb1a_ 149 -----SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP------------S-------TSL 204 (244)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT------------H-------HHH
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc------------C-------ccc
Confidence 1123457999999998888877532 589999999998743321110 0 011
Q ss_pred ccccchhHHHHHHHHHHH
Q 012270 222 SDFTYVENVAHAHVCAAE 239 (467)
Q Consensus 222 ~~~i~v~Dva~a~~~al~ 239 (467)
...+.++|+|+.++..+.
T Consensus 205 ~~~~~pe~va~~i~~~~~ 222 (244)
T d1yb1a_ 205 GPTLEPEEVVNRLMHGIL 222 (244)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 234568999999998876
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.60 E-value=3.8e-15 Score=138.35 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=150.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
+..+|++|||||++-||.++++.|+++| ++|++.++......+.... .+. ....++..+.+|++|++++++.++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~~~~~~~~~~--~~~--~~g~~~~~~~~D~~~~~~v~~~~~~ 77 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVA--ELK--KLGAQGVAIQADISKPSEVVALFDK 77 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCChHHHHHHHH--HHH--HcCCCceEecCCCCCHHHHHHHHHH
Confidence 4578999999999999999999999999 5888876544311100000 000 123468899999999998887664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
+.|++||+||... ..++++..+++|+.++.++++++... .-.+.+.++|...- ..
T Consensus 78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~--~~-------- 147 (259)
T d1ja9a_ 78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV--MT-------- 147 (259)
T ss_dssp HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT--CC--------
T ss_pred HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccc--cc--------
Confidence 4799999999322 23456789999999999999888765 22366666664321 00
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCC------------CCC-cHHHHHHHhcCCCce
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG------------DTQ-LVPLLVNLAKPGWTK 212 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~------------~~~-~~~~~~~~~~~g~~~ 212 (467)
+......|+.+|+..+.+++.++. .+|+++..+.||.+--+. ... ....+...+.+..+
T Consensus 148 ----~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 222 (259)
T d1ja9a_ 148 ----GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNP- 222 (259)
T ss_dssp ----SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTST-
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCC-
Confidence 112345899999999888877653 268999999999885321 000 11122222222222
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
...+...+|+|++++.++.. ...-..|+.+.+.+|.
T Consensus 223 --------l~R~g~p~eVa~~v~fL~S~---~a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 223 --------LKRIGYPADIGRAVSALCQE---ESEWINGQVIKLTGGG 258 (259)
T ss_dssp --------TSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred --------CCCCcCHHHHHHHHHHHhCc---hhcCCcCceEEeCCCC
Confidence 23467799999999988852 1234688999888763
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.59 E-value=6.7e-15 Score=136.67 Aligned_cols=201 Identities=20% Similarity=0.121 Sum_probs=141.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHhC-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEG- 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~- 84 (467)
+..+++||||+|-||.+++++|.++|...|+++.|+........+. ..+. ....++.++.+|++|++++.++++.
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~---~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i 84 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGEL---VAELEALGARTTVAACDVTDRESVRELLGGI 84 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHH---HHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHH---HHHHHhccccccccccccchHHHHHHhhccc
Confidence 3569999999999999999999999953588888764311111000 0110 1234688999999999999988763
Q ss_pred -----CCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccccCCCCCCCCCCCccc
Q 012270 85 -----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (467)
Q Consensus 85 -----~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~ 152 (467)
.|.|||+++... ...+....+++|+.++.++.++++..+..++|++||.+...
T Consensus 85 ~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~--------------- 149 (259)
T d2fr1a1 85 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF--------------- 149 (259)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT---------------
T ss_pred cccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc---------------
Confidence 689999999332 22335668899999999999999888888999999987652
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHH
Q 012270 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (467)
Q Consensus 153 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ 232 (467)
+......|+.+|...|.+.+.... .|++++.+.||.+.+++... ......+... -...+.++++++
T Consensus 150 g~~~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~--~~~~~~~~~~-----------G~~~~~~~~~~~ 215 (259)
T d2fr1a1 150 GAPGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE--GPVADRFRRH-----------GVIEMPPETACR 215 (259)
T ss_dssp CCTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC--------------CTTT-----------TEECBCHHHHHH
T ss_pred CCcccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCcccc--chHHHHHHhc-----------CCCCCCHHHHHH
Confidence 112346799999999999888765 69999999999887664311 0111111111 123467899999
Q ss_pred HHHHHHH
Q 012270 233 AHVCAAE 239 (467)
Q Consensus 233 a~~~al~ 239 (467)
++..++.
T Consensus 216 ~l~~~l~ 222 (259)
T d2fr1a1 216 ALQNALD 222 (259)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998887
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.58 E-value=8.3e-16 Score=142.21 Aligned_cols=211 Identities=16% Similarity=0.154 Sum_probs=144.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH-------
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL------- 82 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~------- 82 (467)
+++||||++.||+.+++.|.++| ++|.+.+|+.... ++ + ......+..+|+.|.+++++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a~V~i~~r~~~~~----~~---~----~~~~~~~~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQK----DE---L----EAFAETYPQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSH----HH---H----HHHHHHCTTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH----HH---H----HhhhCcEEEeccCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999 5999999865421 00 0 0001123346777665554443
Q ss_pred hCCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCCCc
Q 012270 83 EGASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (467)
Q Consensus 83 ~~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E~~ 150 (467)
.++|++||+|+... +.++++..+++|+.++.++.+++. +.+-.++|++||.+.+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~------------- 136 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG------------- 136 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-------------
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc-------------
Confidence 35899999998321 224467889999999888887755 33556999999986642
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--------HHHHHHhcCCCceEEecCCC
Q 012270 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--------PLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 151 p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--------~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+...... +.....+.+..+
T Consensus 137 --~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~p-------- 206 (252)
T d1zmta1 137 --PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA-------- 206 (252)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS--------
T ss_pred --ccccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCC--------
Confidence 1123468999999999988777533 6899999999999766433211 222222222211
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++-
T Consensus 207 -l~R~g~pedvA~~v~fL~S~---~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 207 -LQRLGTQKELGELVAFLASG---SCDYLTGQVFWLAGGF 242 (252)
T ss_dssp -SSSCBCHHHHHHHHHHHHTT---SCGGGTTCEEEESTTC
T ss_pred -CCCCcCHHHHHHHHHHHhCc---hhcCCcCCeEEECCCc
Confidence 12356799999999988741 1234689999998873
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.58 E-value=9.5e-15 Score=136.63 Aligned_cols=228 Identities=12% Similarity=0.066 Sum_probs=152.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|+++||||++-||+++++.|+++| ++|++.+|+.........+ .+. ....++..+.+|++|++++.+.++
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~--~~~--~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVA--AIK--KNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHHHH--HHH--hhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999999999 5999998865311000000 000 123568889999999998887754
Q ss_pred -----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
+.|++||+++... ...++...+++|+.++..+.+++... .-.+.++++|.... ..
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~--~~--------- 159 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ--AK--------- 159 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT--CS---------
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc--cc---------
Confidence 4899999999322 33456788999999999999988764 23578888776432 10
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc-CCCceE-------EecCC
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK-PGWTKF-------IIGSG 218 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~-~g~~~~-------~~g~g 218 (467)
+......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+ +...+..... ...... .....
T Consensus 160 ---~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (272)
T d1g0oa_ 160 ---AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTD----MYHAVCREYIPNGENLSNEEVDEYAAVQW 232 (272)
T ss_dssp ---SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSH----HHHHHGGGGSTTCTTCCHHHHHHHHHHHS
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCCh----HHHHHHHhhhhcccccchHHHHHHHHHcc
Confidence 2234567999999999988766532 6899999999988432 1211111110 000000 00001
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....-+...+|+|.+++.++.. ...-..|++..+.+|.
T Consensus 233 ~PlgR~~~peevA~~v~fL~s~---~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 233 SPLRRVGLPIDIARVVCFLASN---DGGWVTGKVIGIDGGA 270 (272)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred CCCCCCcCHHHHHHHHHHHhCc---hhcCccCceEeECCCC
Confidence 1123467799999999998741 1234689999998874
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=2.4e-15 Score=139.76 Aligned_cols=218 Identities=13% Similarity=0.070 Sum_probs=145.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHh---cCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~---~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
..+|.++||||++-||++++++|.+ +| +.|++.+|+........++ +.......++..+.+|++|++++++++
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~r~~~~l~~~~~~---l~~~~~~~~~~~~~~Dvs~~~~v~~l~ 79 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEE---LGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHH---HHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEECCHHHHHHHHHH---HHhhcCCceEEEEEccCCCHHHHHHHH
Confidence 4578899999999999999999976 78 5999999976521100000 111112346888999999999888775
Q ss_pred h-----------CCCEEEEcccCCC----------CCCChhhHHHhhHHHHHHHHHHHHhC----C--CCeEEEEcCccc
Q 012270 83 E-----------GASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACREC----K--VRRLVYNSTADV 135 (467)
Q Consensus 83 ~-----------~~D~Vih~aa~~~----------~~~~~~~~~~~nv~g~~~ll~aa~~~----~--v~r~v~~SS~~v 135 (467)
+ ..|+++|.|+... ..++++.++++|+.++..+.+++... + -.++|++||...
T Consensus 80 ~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~ 159 (259)
T d1oaaa_ 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 3 2478999988321 11346779999999999999988765 1 247999999866
Q ss_pred cccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-CCCceEEEEeCCCcccCCCCCc-----HHHHHHHhcCC
Q 012270 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALRPSNVFGPGDTQL-----VPLLVNLAKPG 209 (467)
Q Consensus 136 yg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~-~~g~~~~ilRp~~i~G~~~~~~-----~~~~~~~~~~g 209 (467)
+. +......|+.+|+..+.+.+.++. ..|+++..+.||.+-.+..... -+.........
T Consensus 160 ~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~ 224 (259)
T d1oaaa_ 160 LQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKL 224 (259)
T ss_dssp TS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cC---------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhc
Confidence 41 223456899999999998887753 3589999999998864421100 01111111100
Q ss_pred CceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEE
Q 012270 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (467)
Q Consensus 210 ~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni 255 (467)
. ....+..++|+|++++.++.. ..-..|+.+++
T Consensus 225 ~---------~~~r~~~p~evA~~i~~ll~~----~s~~TG~~idv 257 (259)
T d1oaaa_ 225 K---------SDGALVDCGTSAQKLLGLLQK----DTFQSGAHVDF 257 (259)
T ss_dssp H---------HTTCSBCHHHHHHHHHHHHHH----CCSCTTEEEET
T ss_pred C---------CCCCCCCHHHHHHHHHHHhhh----ccCCCCCeEEe
Confidence 0 112346689999999988863 23356766654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.57 E-value=1e-14 Score=138.01 Aligned_cols=223 Identities=14% Similarity=0.103 Sum_probs=147.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
..++|+++||||+|.||++++++|+++| ++|++.+|+........++ +.. .....+..+.+|++|.++++++++
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~---l~~-~~g~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQ---ISS-QTGNKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---HHH-HHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHH---HHH-hcCCceEEEEecccChHHHHHHhhh
Confidence 3456899999999999999999999999 5999999986421100000 000 113467889999999999876653
Q ss_pred ------CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHHh----C-CCCeEEEEcCccccccCCCCCCC
Q 012270 84 ------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFDGSHDIHN 145 (467)
Q Consensus 84 ------~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~~----~-~v~r~v~~SS~~vyg~~~~~~~~ 145 (467)
++|++||+|+.... ..++...+.+|..+...+...+.. . +-..++.+||.....
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-------- 168 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-------- 168 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH--------
T ss_pred hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh--------
Confidence 58999999994321 233556778888887776554432 2 344667777764431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEecCCC
Q 012270 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGE 219 (467)
Q Consensus 146 ~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~---~~~~~~~~~~g~~~~~~g~g~ 219 (467)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... ............+
T Consensus 169 -------~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~p-------- 233 (294)
T d1w6ua_ 169 -------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP-------- 233 (294)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT--------
T ss_pred -------cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCC--------
Confidence 112345799999999999887763 3689999999999976543211 1112222222221
Q ss_pred ccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 220 ~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
..-+..++|+|.++..++.. ...-..|++..+.+|.
T Consensus 234 -l~R~~~pediA~~v~fL~sd---~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 234 -CGRLGTVEELANLAAFLCSD---YASWINGAVIKFDGGE 269 (294)
T ss_dssp -TSSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTH
T ss_pred -CCCCCCHHHHHHHHHHHhCc---hhcCCCCcEEEECCCh
Confidence 22456689999999988741 1234789999999874
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.56 E-value=1.9e-14 Score=132.67 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=118.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh---cCCcEEEEEcCCCCccCCCCcCCCCCCC-cCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~---~g~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
||+||||||++-||++++++|++ +| +.|++.+|+..... + +.+ ....+++.++.+|++|+++++++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g-~~V~~~~r~~~~~~----~---~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 73 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPP-QHLFTTCRNREQAK----E---LEDLAKNHSNIHILEIDLRNFDAYDKLVA 73 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCC-SEEEEEESCTTSCH----H---HHHHHHHCTTEEEEECCTTCGGGHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHH----H---HHHHHhcCCcEEEEEEEeccHHHHHHHHh
Confidence 78999999999999999999974 67 59999999875211 0 111 1124689999999999888775543
Q ss_pred ---------CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC---------------CCCeEEEEc
Q 012270 84 ---------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---------------KVRRLVYNS 131 (467)
Q Consensus 84 ---------~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~---------------~v~r~v~~S 131 (467)
++|++||+||... ..++++..+++|+.|+..+.+++... +-.++|.+|
T Consensus 74 ~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~ 153 (248)
T d1snya_ 74 DIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMS 153 (248)
T ss_dssp HHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEEC
T ss_pred hhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 3899999999422 11225678999999999888776421 346899999
Q ss_pred CccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 012270 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (467)
Q Consensus 132 S~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~ 193 (467)
|....-.+. +......|+.||+....+.+.++. ..|+++..+.||.+--+
T Consensus 154 S~~g~~~~~------------~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 154 SILGSIQGN------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp CGGGCSTTC------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred ccccccCCC------------CCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 974321000 122345899999998888776642 35899999999988433
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.9e-14 Score=129.30 Aligned_cols=213 Identities=14% Similarity=0.078 Sum_probs=144.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
.++|.++||||++-||.+++++|+++| ++|.+.+|+........ +. ..........|+.+.+.+++...
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~-------~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 73 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEAQA-------KK-LGNNCVFAPADVTSEKDVQTALALA 73 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHHHHH-------HH-HCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHH-------HH-hCCCccccccccccccccccccccc
Confidence 478999999999999999999999999 59999999775211000 00 12467788899999876654432
Q ss_pred -----CCCEEEEcccCCC-------------CCCChhhHHHhhHHHHHHHHHHHHhC----------CCCeEEEEcCccc
Q 012270 84 -----GASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADV 135 (467)
Q Consensus 84 -----~~D~Vih~aa~~~-------------~~~~~~~~~~~nv~g~~~ll~aa~~~----------~v~r~v~~SS~~v 135 (467)
..|.+++.++... ..+++...+++|+.++.++.+++... +-.++|++||...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~ 153 (248)
T d2o23a1 74 KGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAA 153 (248)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH
T ss_pred ccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhh
Confidence 4788888876221 11346678999999999999887543 2237999999876
Q ss_pred cccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce
Q 012270 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (467)
Q Consensus 136 yg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~ 212 (467)
+. +......|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+..............+..+
T Consensus 154 ~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p- 217 (248)
T d2o23a1 154 FE---------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVP- 217 (248)
T ss_dssp HH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCS-
T ss_pred cc---------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHHHHHHHHhcCC-
Confidence 52 2234568999999999998887633 5899999999998655433222222211211111
Q ss_pred EEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEE
Q 012270 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (467)
Q Consensus 213 ~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni 255 (467)
.. .-+..++|+|.+++.+++ .+-..|++.+|
T Consensus 218 -l~------~R~g~peevA~~v~fL~s-----~~~itGq~I~v 248 (248)
T d2o23a1 218 -FP------SRLGDPAEYAHLVQAIIE-----NPFLNGEVIRL 248 (248)
T ss_dssp -SS------CSCBCHHHHHHHHHHHHH-----CTTCCSCEEEE
T ss_pred -CC------CCCcCHHHHHHHHHHHHh-----CCCCCceEeEC
Confidence 00 125578999999998876 45567777664
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.54 E-value=8.6e-14 Score=128.33 Aligned_cols=212 Identities=15% Similarity=0.047 Sum_probs=137.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
++|+||||||++-||.+++++|+++|+ +.|.+..|+..... + +.+ ....++.++.+|++|.++++++++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~----~---l~~-~~~~~~~~~~~Dvs~~~~v~~~~~~i 73 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT----E---LKS-IKDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH----H---HHT-CCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHH----H---HHH-hhCCceEEEEEecCCHHHHHHHHHHH
Confidence 358999999999999999999999995 36888888765211 1 111 234578999999999988776642
Q ss_pred -------CCCEEEEcccCCCC--------CCChhhHHHhhHHHHHHHHHHHHhC---------------CCCeEEEEcCc
Q 012270 84 -------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACREC---------------KVRRLVYNSTA 133 (467)
Q Consensus 84 -------~~D~Vih~aa~~~~--------~~~~~~~~~~nv~g~~~ll~aa~~~---------------~v~r~v~~SS~ 133 (467)
+.|++||+||.... .++++..+++|+.|+.++.+++... ...+++.+|+.
T Consensus 74 ~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~ 153 (250)
T d1yo6a1 74 GEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSG 153 (250)
T ss_dssp HHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCG
T ss_pred HHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccc
Confidence 28999999994221 1235679999999999988876421 12467777776
Q ss_pred cccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC
Q 012270 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW 210 (467)
Q Consensus 134 ~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~ 210 (467)
..+.... ... . +..+...|+.||+....+.+.++. ..|+++..+-||.|--+ +. +.
T Consensus 154 ~~~~~~~-----~~~-~--~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~----m~---------~~ 212 (250)
T d1yo6a1 154 LGSITDN-----TSG-S--AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN----LG---------GK 212 (250)
T ss_dssp GGCSTTC-----CST-T--SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------
T ss_pred cccccCC-----ccc-c--cchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCC----CC---------CC
Confidence 5542111 010 0 223445799999999988877653 35899999999977321 10 00
Q ss_pred ceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCcC
Q 012270 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (467)
Q Consensus 211 ~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~s 262 (467)
...+.+++.|..++..+..+ .+...|+.| -.+++|+.
T Consensus 213 -----------~~~~~~e~~a~~~~~~~~~~---~~~~sG~f~-~~~g~p~~ 249 (250)
T d1yo6a1 213 -----------NAALTVEQSTAELISSFNKL---DNSHNGRFF-MRNLKPYE 249 (250)
T ss_dssp -----------------HHHHHHHHHHHTTC---CGGGTTCEE-ETTEEECC
T ss_pred -----------CCCCCHHHHHHHHHHHHhcC---CCCCCeEEE-CCCCeeCC
Confidence 01234688888888877643 234567644 33444443
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=5.2e-14 Score=128.64 Aligned_cols=198 Identities=13% Similarity=0.034 Sum_probs=136.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-----
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV----- 81 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~----- 81 (467)
++|+|+||||+|-||+++++.|.++| ++|.++++..... ......+..|..+.++....
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G-~~V~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEE---------------ASASVIVKMTDSFTEQADQVTAEVG 64 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTT---------------SSEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCcccc---------------ccccceeecccCcHHHHHHHHHHHH
Confidence 36899999999999999999999999 6999998866411 11223444555555443322
Q ss_pred --Hh--CCCEEEEcccCCC--------CCCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCC
Q 012270 82 --LE--GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (467)
Q Consensus 82 --~~--~~D~Vih~aa~~~--------~~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~ 147 (467)
+. ++|++||+||... ..++++..+++|+.++.++.+++... +-.++|++||.+...
T Consensus 65 ~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---------- 134 (236)
T d1dhra_ 65 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------- 134 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------
Confidence 22 3799999998311 11335678999999999988887754 235899999986641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccc
Q 012270 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (467)
Q Consensus 148 E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 222 (467)
+......|+.||+..+.+.+.++.+ .|+++..+.||.+.-| +.+..... ...-
T Consensus 135 -----~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~--------~~~~~~~~---------~~~~ 192 (236)
T d1dhra_ 135 -----GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP--------MNRKSMPE---------ADFS 192 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH--------HHHHHSTT---------SCGG
T ss_pred -----CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC--------cchhhCcc---------chhh
Confidence 1123468999999999999998754 4799999999988533 11122111 1223
Q ss_pred cccchhHHHHHHHHHHHHhccccccCCCcEEEE
Q 012270 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (467)
Q Consensus 223 ~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni 255 (467)
.++..+|+|..+..++.. ......|..+.+
T Consensus 193 ~~~~pe~va~~~~~l~s~---~~~~i~G~~i~v 222 (236)
T d1dhra_ 193 SWTPLEFLVETFHDWITG---NKRPNSGSLIQV 222 (236)
T ss_dssp GSEEHHHHHHHHHHHHTT---TTCCCTTCEEEE
T ss_pred cCCCHHHHHHHHHHHhCC---CccCCCCCeEEE
Confidence 567789999999988752 122356766655
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.52 E-value=3.9e-14 Score=129.45 Aligned_cols=199 Identities=14% Similarity=0.021 Sum_probs=135.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-------
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV------- 81 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~------- 81 (467)
.|||||||+|-||++++++|+++| ++|.+++|...... .....+.+|..+.++....
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G-~~V~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQA---------------DSNILVDGNKNWTEQEQSILEQTASS 66 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTS---------------SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCchhcc---------------cccceeccccCchhHHHHHHHHHHHH
Confidence 579999999999999999999999 69999999765110 1223445666665443322
Q ss_pred Hh--CCCEEEEcccCCC----C----CCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCCCCCCCCC
Q 012270 82 LE--GASTVFYVDATDL----N----TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (467)
Q Consensus 82 ~~--~~D~Vih~aa~~~----~----~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~~~~~~E~ 149 (467)
++ +.|++||+||... . .+.++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 67 ~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~------------ 134 (235)
T d1ooea_ 67 LQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------ 134 (235)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------
T ss_pred hcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC------------
Confidence 22 3799999998321 1 1235568999999999888887764 224899999986641
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCccccc
Q 012270 150 LTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (467)
Q Consensus 150 ~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~ 224 (467)
+......|+.+|+..+.+.+.++.+ .++++..+.|+.+- .. +.+..... .....+
T Consensus 135 ---~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~----T~----~~~~~~~~---------~~~~~~ 194 (235)
T d1ooea_ 135 ---PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLD----TP----MNRKWMPN---------ADHSSW 194 (235)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBC----CH----HHHHHSTT---------CCGGGC
T ss_pred ---CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCc----Cc----chhhhCcC---------CccccC
Confidence 2223468999999999999988644 46788999998873 22 12222211 123467
Q ss_pred cchhHHHHHHHHHHHHhccccccCCCcEEEEcC
Q 012270 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (467)
Q Consensus 225 i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~ 257 (467)
+..+|+++.++..+.... .....|..+.+..
T Consensus 195 ~~~~~va~~~~~~l~~~~--~~~~tG~~i~v~~ 225 (235)
T d1ooea_ 195 TPLSFISEHLLKWTTETS--SRPSSGALLKITT 225 (235)
T ss_dssp BCHHHHHHHHHHHHHCGG--GCCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCcc--ccCCCceEEEEEe
Confidence 789999999876554110 1235677777743
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=2.7e-13 Score=124.09 Aligned_cols=206 Identities=17% Similarity=0.077 Sum_probs=143.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 83 (467)
.|++|||||++-||++++++|+++| ++|.+.+|+.. ..+.....+|+.+......+..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G-a~V~i~~~~~~-----------------~~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRRE-----------------GEDLIYVEGDVTREEDVRRAVARAQE 62 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCC-----------------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCcc-----------------cccceEeeccccchhhhHHHHHhhhc
Confidence 3789999999999999999999999 59999998754 1245678899999877665543
Q ss_pred --CCCEEEEcccCCC-----------CCCChhhHHHhhHHHHHHHHHHHHhC----------CCCeEEEEcCccccccCC
Q 012270 84 --GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVVFDGS 140 (467)
Q Consensus 84 --~~D~Vih~aa~~~-----------~~~~~~~~~~~nv~g~~~ll~aa~~~----------~v~r~v~~SS~~vyg~~~ 140 (467)
+.+.+++.++... ....++..+++|..+..++...+... +-.++|++||...+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~--- 139 (241)
T d1uaya_ 63 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--- 139 (241)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---
T ss_pred cccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc---
Confidence 2355555554111 11234567899999988887765432 234899999987652
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecC
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|+..+.+.+.++. .+|+++..+.||.+-.+.................+. .
T Consensus 140 ------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~--~-- 203 (241)
T d1uaya_ 140 ------------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF--P-- 203 (241)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS--S--
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCCC--C--
Confidence 123356899999999998887763 368999999999986543222222233222222211 1
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
.-+..++|+|.+++.++. .+-..|+++.+.++-
T Consensus 204 ----~R~g~pedvA~~v~fL~s-----~~~iTG~~i~VDGG~ 236 (241)
T d1uaya_ 204 ----PRLGRPEEYAALVLHILE-----NPMLNGEVVRLDGAL 236 (241)
T ss_dssp ----CSCCCHHHHHHHHHHHHH-----CTTCCSCEEEESTTC
T ss_pred ----CCCcCHHHHHHHHHHHHh-----CCCCCCCEEEECCcc
Confidence 124568999999998887 356789999998874
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1e-13 Score=130.28 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=118.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc---CCCCccCCCCcCCCCCCC-cCCCCCeEEEEecCCCHHHHHHHHh-
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD---STQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE- 83 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~---r~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~- 83 (467)
|.||||||++-||+++++.|.++|. +|..+. |+........+. ... .....++..+.+|++|++++.++++
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga-~v~~v~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 78 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEA---ARALACPPGSLETLQLDVRDSKSVAAARER 78 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHH---HHHTTCCTTSEEEEECCTTCHHHHHHHHHT
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCC-CeEEEEEecCChhhhHHHHHH---HHHHhccCCceEEEeccccchHhhhhhhhh
Confidence 5678999999999999999999994 544443 332210000000 000 1124578999999999999988875
Q ss_pred ----CCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC
Q 012270 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
..|+++|+|+... ..+++...+++|+.|+.++.+++. +.+-.++|++||.+...
T Consensus 79 ~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~----------- 147 (285)
T d1jtva_ 79 VTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM----------- 147 (285)
T ss_dssp CTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS-----------
T ss_pred ccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC-----------
Confidence 3799999998322 335567899999999998888754 44667999999986641
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccC
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGP 193 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~ 193 (467)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+--+
T Consensus 148 ----~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 148 ----GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 2223468999999999887776533 6899999999988543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=9.9e-13 Score=121.61 Aligned_cols=221 Identities=13% Similarity=0.058 Sum_probs=149.7
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
..+|++|||||+| -||+++++.|+++| ++|++.+|+........+ ..........+..|..+..+....+.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLKGRVEE------FAAQLGSDIVLQCDVAEDASIDTMFA 75 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTTTHHHHHH------HHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH------HHhhcCCcceeecccchHHHHHHHHH
Confidence 3689999999998 79999999999999 599999987541110000 01123456778899999887766653
Q ss_pred -------CCCEEEEcccCCCC------------CCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCC
Q 012270 84 -------GASTVFYVDATDLN------------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (467)
Q Consensus 84 -------~~D~Vih~aa~~~~------------~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~ 142 (467)
..|++||+++.... ..++....++|..+...+.+++... +-+.+|++||.....
T Consensus 76 ~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~----- 150 (258)
T d1qsga_ 76 ELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----- 150 (258)
T ss_dssp HHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----
T ss_pred HhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc-----
Confidence 36999999984321 1223457778888888888887765 224688888875421
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEecC
Q 012270 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (467)
Q Consensus 143 ~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~--~~~~~~~~~~g~~~~~~g~ 217 (467)
+......|+.+|+..+.+++.++. .+|+++..++||.+..+..... -...........|
T Consensus 151 ----------~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p------ 214 (258)
T d1qsga_ 151 ----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP------ 214 (258)
T ss_dssp ----------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST------
T ss_pred ----------CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCC------
Confidence 112346799999999988877653 2689999999999987654321 1222222222111
Q ss_pred CCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCC
Q 012270 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (467)
Q Consensus 218 g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~ 260 (467)
..-+..++|+|.+++.++.. ...-..|+++.+.++..
T Consensus 215 ---l~R~~~peeia~~v~fL~s~---~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 ---IRRTVTIEDVGNSAAFLCSD---LSAGISGEVVHVDGGFS 251 (258)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGG
T ss_pred ---CCCCcCHHHHHHHHHHHhCc---hhcCccCceEEECcCHH
Confidence 12356689999999988741 13457899999988743
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.6e-13 Score=126.83 Aligned_cols=179 Identities=17% Similarity=0.057 Sum_probs=120.1
Q ss_pred CCEE-EEEcCCChhHHHHHHHHHhc-CCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--
Q 012270 8 PRTC-VVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 8 ~~~i-lVtGatGfiG~~lv~~Ll~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~-- 83 (467)
+|+| +||||++-||..++++|+++ | ..|++.+|+........++ +. ....++.++.+|++|.++++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~~~~~~~~~~~---l~--~~~~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQ---LQ--AEGLSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHH---HH--HTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHH---HH--hcCCcEEEEEEecCCHHHHHHHHHHH
Confidence 4555 89999999999999999987 7 5999999987521110000 11 123568899999999999876653
Q ss_pred -----CCCEEEEcccCCCC-------CCChhhHHHhhHHHHHHHHHHHHhC--CCCeEEEEcCccccccCCCC-------
Q 012270 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD------- 142 (467)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~nv~g~~~ll~aa~~~--~v~r~v~~SS~~vyg~~~~~------- 142 (467)
++|++||+||.... ..+++..+++|+.|+..+.+++... .-.|+|++||..........
T Consensus 76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k 155 (275)
T d1wmaa1 76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQK 155 (275)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHH
T ss_pred HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhh
Confidence 48999999994321 1235578999999999999988754 22489999997543110000
Q ss_pred --CCCCCC-----------------CcccCCCCCChHHHHHHHHHHHHHhhc-------CCCCceEEEEeCCCccc
Q 012270 143 --IHNGDE-----------------TLTCCWKFQDLMCDLKAQAEALVLFAN-------NIDGLLTCALRPSNVFG 192 (467)
Q Consensus 143 --~~~~~E-----------------~~p~~~~~~~~Y~~sK~~~E~~v~~~~-------~~~g~~~~ilRp~~i~G 192 (467)
.....+ ....+..+...|+.||+....+.+.++ ...|+.+..+-||.|--
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T 231 (275)
T d1wmaa1 156 FRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRT 231 (275)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCS
T ss_pred hcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccC
Confidence 000000 000022345689999998877654432 22589999999998843
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6.5e-13 Score=123.68 Aligned_cols=197 Identities=12% Similarity=0.049 Sum_probs=136.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH---
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--- 82 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--- 82 (467)
.++|+++||||++-||+++++.|+++| ++|.+++|+........++ . .......+..+.+|..+.+......
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r~~~~l~~~~~~---~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 86 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSH---C-LELGAASAHYIAGTMEDMTFAEQFVAQA 86 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---H-HHHTCSEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHH---H-hhhhcccchhhhhhhhhHHHHHHHHHHH
Confidence 467999999999999999999999999 6999999976421000000 0 0012345777889999987766543
Q ss_pred ----hCCCEEEEcccCCC-------CCCChhhHHHhhHHHHHHHHHHHHhC---CCCeEEEEcCccccccCCCCCCCCCC
Q 012270 83 ----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDE 148 (467)
Q Consensus 83 ----~~~D~Vih~aa~~~-------~~~~~~~~~~~nv~g~~~ll~aa~~~---~v~r~v~~SS~~vyg~~~~~~~~~~E 148 (467)
...|+++++|+... +.+++...+++|+.++..+.+++... +-.++|++||.+.+.
T Consensus 87 ~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~----------- 155 (269)
T d1xu9a_ 87 GKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV----------- 155 (269)
T ss_dssp HHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS-----------
T ss_pred HHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcC-----------
Confidence 25899999998322 22345678999999998888877532 235899999987641
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEecCCCcccc
Q 012270 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (467)
Q Consensus 149 ~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~ 223 (467)
+......|+.||+..+.+.+.++.+ .++++..+.||.|- +. +......+. ....
T Consensus 156 ----~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~----T~----~~~~~~~~~---------~~~~ 214 (269)
T d1xu9a_ 156 ----AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLID----TE----TAMKAVSGI---------VHMQ 214 (269)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBC----CH----HHHHHSCGG---------GGGG
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCC----Cc----HHHHhccCC---------cccc
Confidence 2233569999999999888877633 56899999998773 22 222222222 1223
Q ss_pred ccchhHHHHHHHHHHH
Q 012270 224 FTYVENVAHAHVCAAE 239 (467)
Q Consensus 224 ~i~v~Dva~a~~~al~ 239 (467)
....+++|+.++....
T Consensus 215 ~~~~e~~a~~i~~~~~ 230 (269)
T d1xu9a_ 215 AAPKEECALEIIKGGA 230 (269)
T ss_dssp CBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhh
Confidence 4567899999988775
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.35 E-value=4.7e-12 Score=118.61 Aligned_cols=225 Identities=9% Similarity=-0.015 Sum_probs=140.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCC-cC----C---------CCCCCcCCCCCeEEEEecCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS-ES----N---------SLLPDSLSSGRAEYHQVDVR 73 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~-~~----~---------~~~~~~~~~~~v~~~~~Dl~ 73 (467)
+..++||||++-||+++++.|+++| ++|.+.++......... +. . ................+|++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence 4578999999999999999999999 58988877542110000 00 0 00000011223445667899
Q ss_pred CHHHHHHHHh-------CCCEEEEcccCCCC-------CCC--------------hhhHHHhhHHHHHHHHHHHHhC---
Q 012270 74 DISQIKKVLE-------GASTVFYVDATDLN-------TDD--------------FYNCYMIIVQGAKNVVTACREC--- 122 (467)
Q Consensus 74 d~~~l~~~~~-------~~D~Vih~aa~~~~-------~~~--------------~~~~~~~nv~g~~~ll~aa~~~--- 122 (467)
+.++++++++ ++|++||+||.... .++ ....+.+|+.++..+.+++...
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 9888877653 58999999994221 111 1236788999988888775431
Q ss_pred -------CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCccc
Q 012270 123 -------KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFG 192 (467)
Q Consensus 123 -------~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G 192 (467)
+..++|++||..... +......|+.+|+..+.+.+.++. .+|+++..+.||.+-.
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~ 225 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 225 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCC
T ss_pred hHHHhcCCCCcccccccccccC---------------CccceeeeccccccchhhhHHHHHHhCCccccccccccccccc
Confidence 234677777765431 223456899999999998887753 3689999999986422
Q ss_pred CCCCCcHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 193 PGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 193 ~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
. ....+..........+. ..-+..++|+|.+++.++.. ...-..|+++.+.+|..+
T Consensus 226 ~--~~~~~~~~~~~~~~~pl--------~~R~~~peeiA~~v~fL~S~---~s~~itG~~i~VDGG~sl 281 (284)
T d1e7wa_ 226 V--DDMPPAVWEGHRSKVPL--------YQRDSSAAEVSDVVIFLCSS---KAKYITGTCVKVDGGYSL 281 (284)
T ss_dssp G--GGSCHHHHHHHHTTCTT--------TTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred c--ccCCHHHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhCc---hhcCccCCeEEECcChhc
Confidence 1 12223344443333221 12355689999999988741 123468999999987544
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.31 E-value=3.4e-12 Score=118.61 Aligned_cols=222 Identities=10% Similarity=-0.023 Sum_probs=139.9
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.++|++|||||+| -||++++++|.++| .+|.+.+|+..+.... ..+ ....+...+.+|+++.++...+++
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~G-a~Vil~~~~~~~~~~~------~~~-~~~~~~~~~~~dv~~~~~~~~~~~ 75 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQR------ITD-RLPAKAPLLELDVQNEEHLASLAG 75 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTT-CEEEEEECSCHHHHHH------HHT-TSSSCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcC-CEEEEEeCChHHHHHH------HHH-HcCCceeeEeeecccccccccccc
Confidence 4679999999765 49999999999999 5999998876421000 111 123457788999999876655432
Q ss_pred ----------CCCEEEEcccCCCC------------CCChhhHHHhhHHHHHHHHHHHHhCC-CCeEEEEcCccccccCC
Q 012270 84 ----------GASTVFYVDATDLN------------TDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGS 140 (467)
Q Consensus 84 ----------~~D~Vih~aa~~~~------------~~~~~~~~~~nv~g~~~ll~aa~~~~-v~r~v~~SS~~vyg~~~ 140 (467)
..|+++|+++.... ..++...+++|.........++.... -...+.++|.....
T Consensus 76 ~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~--- 152 (268)
T d2h7ma1 76 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR--- 152 (268)
T ss_dssp HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---
T ss_pred hhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---
Confidence 26999999983211 12233456677777776666666542 22344444443320
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC--------CC----cHHHHHHH
Q 012270 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD--------TQ----LVPLLVNL 205 (467)
Q Consensus 141 ~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~--------~~----~~~~~~~~ 205 (467)
+......|+.+|...+.+.+.++.+ +|+++..+.||.+-.+.. .. ....+...
T Consensus 153 ------------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (268)
T d2h7ma1 153 ------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEG 220 (268)
T ss_dssp ------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred ------------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHH
Confidence 1123458999999999988876532 689999999998854311 00 01111111
Q ss_pred hcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCCCc
Q 012270 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (467)
Q Consensus 206 ~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~~~ 261 (467)
.....| ..+.+..++|+|.++..++.. ......|+++.+.+|...
T Consensus 221 ~~~~~p--------l~rr~~~p~dva~~v~fL~Sd---~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 221 WDQRAP--------IGWNMKDATPVAKTVCALLSD---WLPATTGDIIYADGGAHT 265 (268)
T ss_dssp HHHHCT--------TCCCTTCCHHHHHHHHHHHSS---SCTTCCSEEEEESTTGGG
T ss_pred HHhcCC--------CCCCCCCHHHHHHHHHHHhCc---hhcCccCCEEEECcCccc
Confidence 111111 013466799999999988741 124568999999987544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.30 E-value=1.4e-11 Score=114.79 Aligned_cols=220 Identities=11% Similarity=0.047 Sum_probs=137.0
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 6 ~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.++|++|||||+| -||.+++++|+++| ++|++.+|++...... ++ +. ..........+|+++.++..++++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~G-a~V~i~~r~~~~~~~~-~~---l~--~~~~~~~~~~~d~~~~~~~~~~~~ 75 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNESLEKRV-RP---IA--QELNSPYVYELDVSKEEHFKSLYN 75 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTTTHHHH-HH---HH--HHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH-HH---HH--hhCCceeEeeecccchhhHHHHHH
Confidence 3689999999987 69999999999999 5999999975411000 00 00 113456778999999888776653
Q ss_pred -------CCCEEEEcccCCCC--------CCChhhHH---HhhHHHHHHHHHHHHhC-CCCe-EEEEcCccccccCCCCC
Q 012270 84 -------GASTVFYVDATDLN--------TDDFYNCY---MIIVQGAKNVVTACREC-KVRR-LVYNSTADVVFDGSHDI 143 (467)
Q Consensus 84 -------~~D~Vih~aa~~~~--------~~~~~~~~---~~nv~g~~~ll~aa~~~-~v~r-~v~~SS~~vyg~~~~~~ 143 (467)
++|++||+++.... ...+.... ..+.............. +-.+ ++.+|+.+...
T Consensus 76 ~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~------ 149 (274)
T d2pd4a1 76 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------ 149 (274)
T ss_dssp HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------
T ss_pred HHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc------
Confidence 47999999993321 11122222 22222333333333332 2223 55555544321
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEecCC
Q 012270 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (467)
Q Consensus 144 ~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~--~~~~~~~~~g~~~~~~g~g 218 (467)
+......|+.+|...+.+.+..+.+ +|+++.++.||.+.-+...... ...........
T Consensus 150 ---------~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 212 (274)
T d2pd4a1 150 ---------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINA-------- 212 (274)
T ss_dssp ---------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHS--------
T ss_pred ---------ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhh--------
Confidence 2234568999999999987765432 6899999999988766443221 12221111111
Q ss_pred CccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 219 ~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
....+..++|+|.+++.++.. ...-..|+++.+.++.
T Consensus 213 -p~~r~~~pedIA~~v~fL~S~---~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 213 -PLRKNVSLEEVGNAGMYLLSS---LSSGVSGEVHFVDAGY 249 (274)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred -hccCCcCHHHHHHHHHHHhCh---hhCCCcCceEEECCCh
Confidence 123456799999999988751 1244789999999974
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.30 E-value=1.9e-11 Score=115.22 Aligned_cols=229 Identities=8% Similarity=0.022 Sum_probs=141.3
Q ss_pred CCCCCCCCCEEEEEcCCC--hhHHHHHHHHHhcCCcEEEEEcCCCCcc-------CCCCcCCCCCCCcCCCC---CeEEE
Q 012270 1 MPFDEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQ-------LDPSESNSLLPDSLSSG---RAEYH 68 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatG--fiG~~lv~~Ll~~g~~~V~~~~r~~~~~-------~~~~~~~~~~~~~~~~~---~v~~~ 68 (467)
|+. +.++|++|||||+| -||+.+++.|+++| .+|++.+|.+... ............ .... ++..+
T Consensus 2 ~~~-~L~gK~alVTGass~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (297)
T d1d7oa_ 2 LPI-DLRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPD-GSLMEIKKVYPL 78 (297)
T ss_dssp CCC-CCTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTT-SSBCCEEEEEEE
T ss_pred CCc-CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCchhhhhhHHHHHHhhhhhhhhhhh-hhhhhhhhhhhh
Confidence 443 45789999999987 79999999999999 5999988754210 000000000000 0011 11122
Q ss_pred Eec---------------------CCCHHHH----HHHHhCCCEEEEcccCCC---------CCCChhhHHHhhHHHHHH
Q 012270 69 QVD---------------------VRDISQI----KKVLEGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKN 114 (467)
Q Consensus 69 ~~D---------------------l~d~~~l----~~~~~~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ 114 (467)
..+ ..+.+++ .+.+.++|++||+||... +.+++...+++|+.++.+
T Consensus 79 ~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~ 158 (297)
T d1d7oa_ 79 DAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVS 158 (297)
T ss_dssp CTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred hhhccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhh
Confidence 211 1222222 222346899999998421 223467799999999999
Q ss_pred HHHHHHhCCC--CeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhc----CCCCceEEEEeCC
Q 012270 115 VVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN----NIDGLLTCALRPS 188 (467)
Q Consensus 115 ll~aa~~~~v--~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~----~~~g~~~~ilRp~ 188 (467)
+.+++..... .+.+.+++.+.... .......|+.+|...+.+.+..+ .++|+++..+.||
T Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~--------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG 224 (297)
T d1d7oa_ 159 LLSHFLPIMNPGGASISLTYIASERI--------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAG 224 (297)
T ss_dssp HHHHHGGGEEEEEEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hhhHHHHHhhcCCcceeeeehhhccc--------------ccccccceecccccccccccccchhccccceEEecccccc
Confidence 9998876522 24555555543210 11334579999998887766543 2368999999999
Q ss_pred CcccCCCCC--cHHHHHHHhcCCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 189 NVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 189 ~i~G~~~~~--~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
.+-.+.... ....+.....+..|+ ..+..++|+|.+++.++.. ...-..|+++.+.++
T Consensus 225 ~i~T~~~~~~~~~~~~~~~~~~~~Pl---------gR~~~peevA~~v~fL~S~---~a~~itGq~i~vDGG 284 (297)
T d1d7oa_ 225 PLGSRAAKAIGFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVSP---LASAITGATIYVDNG 284 (297)
T ss_dssp CCBCCCSSCCSHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTT
T ss_pred cccchhhhhccCCHHHHHHHHhCCCC---------CCCCCHHHHHHHHHHHhCc---hhcCCcCceEEECcC
Confidence 998776543 223444444332221 2356699999999988741 124468999999887
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.29 E-value=1e-10 Score=107.61 Aligned_cols=216 Identities=12% Similarity=-0.045 Sum_probs=132.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHH-----
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL----- 82 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~----- 82 (467)
||.|+||||++-||++++++|+++| ++|.+++|+... ...|+.+.+......
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G-a~V~~~~~~~~~----------------------~~~d~~~~~~~~~~~~~~~~ 57 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAE----------------------VIADLSTAEGRKQAIADVLA 57 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSS----------------------EECCTTSHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECChHH----------------------HHHHhcCHHHHHHHHHHHHH
Confidence 6789999999999999999999999 599999986530 245777766554332
Q ss_pred ---hCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHH----hCCCCeEEEEcCccccccCCCCCCCCCC-------
Q 012270 83 ---EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE------- 148 (467)
Q Consensus 83 ---~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~----~~~v~r~v~~SS~~vyg~~~~~~~~~~E------- 148 (467)
...|+++|+|+.............+|..+...+.+... +........+++.......... .+...
T Consensus 58 ~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~ 136 (257)
T d1fjha_ 58 KCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK-NPLALALEAGEE 136 (257)
T ss_dssp TCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG-CTTHHHHHHTCH
T ss_pred HhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhh-hhhhhhccCCcE
Confidence 24899999999766666677778888888777766544 3344455555554322100000 00000
Q ss_pred -------CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEec
Q 012270 149 -------TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIG 216 (467)
Q Consensus 149 -------~~p~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~ilRp~~i~G~~~~~~~~--~~~~~~~~g~~~~~~g 216 (467)
.......+...|+.+|+..+.+.+.++.+ +|+++..+.||.+-.|.....+. .......+
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~-------- 208 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK-------- 208 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHh--------
Confidence 00001112346999999999998887633 68999999999986553222111 01111111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCC
Q 012270 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (467)
Q Consensus 217 ~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~ 258 (467)
...+..-+..++|+|.+++.++.. ...-..|+++.+.+|
T Consensus 209 ~~~PlgR~g~p~eva~~v~fL~S~---~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 209 FVPPMGRRAEPSEMASVIAFLMSP---AASYVHGAQIVIDGG 247 (257)
T ss_dssp CCCSTTSCCCTHHHHHHHHHHTSG---GGTTCCSCEEEESTT
T ss_pred cCCCCCCCcCHHHHHHHHHHHhCc---hhCCccCceEEeCCC
Confidence 001223466799999999988741 124478999999886
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.16 E-value=5.8e-10 Score=102.90 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=132.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC-CcCCCCCCCcCCCCCeEEEEecCCC----HHHHHHH---
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESNSLLPDSLSSGRAEYHQVDVRD----ISQIKKV--- 81 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~l~~~--- 81 (467)
..|||||++-||++++++|+++| ++|++.+|+....... .++ + .............|..+ .+.+.+.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G-~~Vvi~~r~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAE---L-NAARAGSAVLCKGDLSLSSSLLDCCEDIIDC 77 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHH---H-HHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHHH---H-HhhcCCceEEEecccccchhHHHHHHHHHHH
Confidence 57999999999999999999999 5999999875421000 000 0 00113455666666544 3333332
Q ss_pred ----HhCCCEEEEcccCCCCC------------------CChhhHHHhhHHHHHHHHHHHHhC---------CCCeEEEE
Q 012270 82 ----LEGASTVFYVDATDLNT------------------DDFYNCYMIIVQGAKNVVTACREC---------KVRRLVYN 130 (467)
Q Consensus 82 ----~~~~D~Vih~aa~~~~~------------------~~~~~~~~~nv~g~~~ll~aa~~~---------~v~r~v~~ 130 (467)
+.++|++||+||..... ..+......|..+........... ....++.+
T Consensus 78 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
T d1mxha_ 78 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL 157 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred HHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhh
Confidence 33599999999943211 112234455555555555544432 12245555
Q ss_pred cCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc
Q 012270 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK 207 (467)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~ilRp~~i~G~~~~~~~~~~~~~~~ 207 (467)
|+.... . +......|+.+|+..+.+.+.++. .+|+++..+.||.+.-+.... ........
T Consensus 158 ~~~~~~--~-------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~--~~~~~~~~ 220 (266)
T d1mxha_ 158 CDAMTD--L-------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP--QETQEEYR 220 (266)
T ss_dssp CCGGGG--S-------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC--HHHHHHHH
T ss_pred hhcccc--c-------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC--HHHHHHHH
Confidence 554332 1 223457899999999998877753 268999999999987554322 23333333
Q ss_pred CCCceEEecCCCccccccchhHHHHHHHHHHHHhccccccCCCcEEEEcCCC
Q 012270 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (467)
Q Consensus 208 ~g~~~~~~g~g~~~~~~i~v~Dva~a~~~al~~~~~~~~~~~g~~yni~~~~ 259 (467)
+..+. + +-+..++|+|.+++.++.. ...-..|+++.+.++-
T Consensus 221 ~~~pl---~-----r~~~~peeva~~v~fL~s~---~s~~itG~~i~vDGG~ 261 (266)
T d1mxha_ 221 RKVPL---G-----QSEASAAQIADAIAFLVSK---DAGYITGTTLKVDGGL 261 (266)
T ss_dssp TTCTT---T-----SCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred hcCCC---C-----CCCCCHHHHHHHHHHHhCc---hhCCccCCeEEECccH
Confidence 32221 1 2245689999999988851 0234689999998874
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.13 E-value=2e-10 Score=109.65 Aligned_cols=168 Identities=7% Similarity=-0.035 Sum_probs=107.4
Q ss_pred CCEEEEEc--CCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCC------CcCCCCCCCcC-CCCCeEEEE---------
Q 012270 8 PRTCVVLN--GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP------SESNSLLPDSL-SSGRAEYHQ--------- 69 (467)
Q Consensus 8 ~~~ilVtG--atGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~------~~~~~~~~~~~-~~~~v~~~~--------- 69 (467)
.|.+|||| ++.-||+.+++.|.++| .+|.+.++........ ........... .........
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~G-A~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcC-CEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 47899999 55699999999999999 5999887654210000 00000000000 001111222
Q ss_pred -----------ecCCCHHHHHHH-------HhCCCEEEEcccCCC---------CCCChhhHHHhhHHHHHHHHHHHHhC
Q 012270 70 -----------VDVRDISQIKKV-------LEGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC 122 (467)
Q Consensus 70 -----------~Dl~d~~~l~~~-------~~~~D~Vih~aa~~~---------~~~~~~~~~~~nv~g~~~ll~aa~~~ 122 (467)
+|+.+.++++++ +.++|++||+|+... ..+++...+++|+.++..+.+++...
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 244454333333 346899999988321 22456779999999999998888765
Q ss_pred --CCCeEEEEcCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC----CCCceEEEEeCCCc
Q 012270 123 --KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNV 190 (467)
Q Consensus 123 --~v~r~v~~SS~~vyg~~~~~~~~~~E~~p~~~~~~~~Y~~sK~~~E~~v~~~~~----~~g~~~~ilRp~~i 190 (467)
.-.++|.+||.+... . -+.+...|+.+|+..|.+++.++. ++|+++..|.||.|
T Consensus 161 m~~~GsIv~iss~~~~~--~------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i 220 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQK--V------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL 220 (329)
T ss_dssp EEEEEEEEEEECGGGTS--C------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred cccccccccceeehhcc--c------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence 224799998875531 0 112345799999999998888763 35899999999977
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.76 E-value=1.5e-09 Score=95.02 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=66.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
..++|+++||||+|.||+.+++.|+++| .+|++++|+........+ ......++....+|+.|.+++++++.+
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQAAAD------SVNKRFKVNVTAAETADDASRAEAVKG 92 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHH------HHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccchHHHHHHHH------HHHhccchhhhhhhcccHHHHHHHhcC
Confidence 3478999999999999999999999999 599999998752111000 011123456788999999999999999
Q ss_pred CCEEEEcccCC
Q 012270 85 ASTVFYVDATD 95 (467)
Q Consensus 85 ~D~Vih~aa~~ 95 (467)
+|+|||+|+..
T Consensus 93 iDilin~Ag~g 103 (191)
T d1luaa1 93 AHFVFTAGAIG 103 (191)
T ss_dssp CSEEEECCCTT
T ss_pred cCeeeecCccc
Confidence 99999999843
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.23 E-value=1.1e-06 Score=71.32 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=69.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
|+|+|.|+ |.+|+.+++.|.++| ++|+++++++.... ......+...+.||..|++.+.++ ++.+|+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d~~~~~----------~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICK----------KASAEIDALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHH----------HHHHHCSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCcceecCChhhhh----------hhhhhhhhhhccCcccchhhhhhcChhhhhh
Confidence 79999998 999999999999999 59999999875211 111113678999999999999887 577999
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
++-+.. +. +.|+. +...+++.++++.|
T Consensus 69 vv~~t~------~d----~~N~~----~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 69 YIAVTG------KE----EVNLM----SSLLAKSYGINKTI 95 (132)
T ss_dssp EEECCS------CH----HHHHH----HHHHHHHTTCCCEE
T ss_pred hcccCC------cH----HHHHH----HHHHHHHcCCceEE
Confidence 885432 11 34543 33356677887776
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=4.6e-06 Score=68.41 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=58.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc---EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|++|.|.||||++|+.+++.|+++..+ +++.+.++.+...... . ..-.....+..+.+ .+.+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~---------~--~~~~~~~~~~~~~~----~~~~ 65 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS---------F--GGTTGTLQDAFDLE----ALKA 65 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG---------G--GTCCCBCEETTCHH----HHHT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc---------c--cCCceeeecccchh----hhhc
Confidence 679999999999999999988876422 6777766554111100 0 01111223344433 3578
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
+|+||.+++ ..-...+...+.+.|.+ .+.+|..+.|
T Consensus 66 ~DivF~a~~---------------~~~s~~~~~~~~~~g~~-~~VID~Ss~f 101 (146)
T d1t4ba1 66 LDIIVTCQG---------------GDYTNEIYPKLRESGWQ-GYWIDAASSL 101 (146)
T ss_dssp CSEEEECSC---------------HHHHHHHHHHHHHTTCC-CEEEECSSTT
T ss_pred CcEEEEecC---------------chHHHHhhHHHHhcCCC-eecccCCccc
Confidence 999997775 12245566677777764 3344444445
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.11 E-value=4.5e-06 Score=68.42 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=77.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
||.|+||+|.+|++++..|..+|. .+++++|..+.+.... . +.+...... ...-+ ......+.++++|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--D---l~~~~~~~~---~~~~~-~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--D---LSHIETRAT---VKGYL-GPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--H---HTTSSSSCE---EEEEE-SGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--H---HhhhhhhcC---CCeEE-cCCChHHHhCCCCEE
Confidence 799999999999999999998875 4899999765321000 0 111111111 11112 234556788999999
Q ss_pred EEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 89 FYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 89 ih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
|.+||... ...+.....+.|....+.+++.+++++.+-++.+-|
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99999433 334567788999999999999999997655554444
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.89 E-value=5.8e-05 Score=61.59 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=76.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCC--cCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|||.|+||+|.+|+.++..|+.+|. .++.++|+.+......... ..+.+ .....++.....--.|. +.++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a-~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLR-EDIYDALAGTRSDANIYVESDENL----RIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHH-HHHHHHHTTSCCCCEEEEEETTCG----GGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhccc-ccchhcccccccCCccccCCcchH----HHhccc
Confidence 6899999999999999999999884 3899999875321000000 00111 01122333332222232 356789
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
|+||-+||... ...+....++.|..-.+.+++...+++.+.++.+
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 99999999543 3345677889999999999999988876555433
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.86 E-value=1.2e-05 Score=65.97 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
..|||.|+|+ |++|+.++..|+.+|. .+|+++|+.+......... +.+. ..........+|.. .+.+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D---l~~a~~~~~~~~~~~~d~~-------~~~~ 72 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD---LEDAQAFTAPKKIYSGEYS-------DCKD 72 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHGGGGGSCCCEEEECCGG-------GGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH---HhccccccCCceEeeccHH-------Hhcc
Confidence 4679999996 9999999999999874 3899999876421000000 0000 11123344556642 3578
Q ss_pred CCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+|+||.+|+... ...+.......|+.-.+.+++..++++.+-++.+-|
T Consensus 73 adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 999999998433 234455677889999999999999997765555444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=2.7e-05 Score=62.79 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=56.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
|+++|.|+ |-+|+++++.|.++|+ +|++++.++... +.....+...+.+|.++++.+.++ ++++|+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~-~vvvid~d~~~~-----------~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~ 67 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGH-EVLAVDINEEKV-----------NAYASYATHAVIANATEENELLSLGIRNFEY 67 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEESCHHHH-----------HHTTTTCSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-eEEEecCcHHHH-----------HHHHHhCCcceeeecccchhhhccCCccccE
Confidence 57889977 9999999999999995 999999987621 112334567889999999999887 788998
Q ss_pred EEEcc
Q 012270 88 VFYVD 92 (467)
Q Consensus 88 Vih~a 92 (467)
||-+.
T Consensus 68 vi~~~ 72 (134)
T d2hmva1 68 VIVAI 72 (134)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 87443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.76 E-value=4.4e-05 Score=63.14 Aligned_cols=119 Identities=8% Similarity=0.047 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHH
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~ 82 (467)
..+.+||.|+|+ |.+|+.++..|...+..+++++|..+......... +.+. ......... ++- ..++++
T Consensus 4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~D---l~~~~~~~~~~~~~~-~~~----~~~~~~ 74 (154)
T d1pzga1 4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALD---LSHVTSVVDTNVSVR-AEY----SYEAAL 74 (154)
T ss_dssp CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHH---HHHHHHHTTCCCCEE-EEC----SHHHHH
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHH---HhhhccccCCeeEEe-ccC----chhhhh
Confidence 345689999997 99999999988888866899999776421100000 0000 000111111 111 124677
Q ss_pred hCCCEEEEcccCCCCC------CChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 83 EGASTVFYVDATDLNT------DDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 83 ~~~D~Vih~aa~~~~~------~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+++|+|+-+++..... .+.......|..-.+.+++.+++++.+-++.+-|
T Consensus 75 ~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 75 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 8999999999843321 2445678889999999999999987665555444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.73 E-value=0.00016 Score=58.93 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=54.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc---EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|||.|.|||||+|+.|++.|+++.++ ++..+..+.+... ... .. .. .....+..|. ..++++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk--------~~~-~~-~~-~~~~~~~~~~----~~~~~~ 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--------APN-FG-KD-AGMLHDAFDI----ESLKQL 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB--------CCC-SS-SC-CCBCEETTCH----HHHTTC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc--------ccc-cC-Cc-ceeeecccch----hhhccc
Confidence 68999999999999999998875432 5665554332100 000 00 11 1111233343 335789
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC-eEEEEcCc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~-r~v~~SS~ 133 (467)
|+||-+... .-+..+...+.+.|.+ .+|=.||.
T Consensus 66 DvvF~alp~---------------~~s~~~~~~l~~~g~~~~VIDlSsd 99 (147)
T d1mb4a1 66 DAVITCQGG---------------SYTEKVYPALRQAGWKGYWIDAAST 99 (147)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHTTCCSEEEESSST
T ss_pred cEEEEecCc---------------hHHHHHhHHHHHcCCceEEEeCCcc
Confidence 999977641 1234566677777774 35555554
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00038 Score=56.59 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=73.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-CC-cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLEL-GK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~-g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|||.|+|++|.+|++++..|..+ +. .++.++|..+.. ...... +.+......... ..+-.+. ++++++|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~D---l~h~~~~~~~~~-~~~~~~~----~~~~~aD 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVD---LSHIPTAVKIKG-FSGEDAT----PALEGAD 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHH---HHTSCSSCEEEE-ECSSCCH----HHHTTCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHH---HHCCccccCCcE-EEcCCCc----cccCCCC
Confidence 78999999999999999887643 32 489999975421 000000 111111112222 2223332 3577899
Q ss_pred EEEEcccCC-CCCCChhhHHHhhHHHHHHHHHHHHhCCCCe-EEEEc
Q 012270 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (467)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r-~v~~S 131 (467)
+||.+||.. ....+.....+.|..-.+.+.+.+.+++.+. ++.+|
T Consensus 72 vvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 72 VVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 999999943 3334566788999999999999999987554 44444
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.55 E-value=7.8e-05 Score=60.52 Aligned_cols=111 Identities=9% Similarity=-0.030 Sum_probs=73.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
||.|+||+|.+|++++..|+.++.. ++.++|..........+. -.+.+. ..........+|.. .+.++|+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a-~Dl~~~~~~~~~~~i~~~~~~-------~~~~aDi 73 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQA-ADTNHGIAYDSNTRVRQGGYE-------DTAGSDV 73 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHH-HHHHHHHTTTCCCEEEECCGG-------GGTTCSE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceee-cchhhcccccCCceEeeCCHH-------HhhhcCE
Confidence 7999999999999999999999853 899998643211000000 001110 11233444445442 2568999
Q ss_pred EEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 88 VFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 88 Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
|+-+|+... ...+.....+.|..-.+.+.+..++++.+-++
T Consensus 74 VvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ 115 (142)
T d1o6za1 74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115 (142)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 999999443 33456778899999999999999998754433
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.55 E-value=6.8e-05 Score=63.25 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=55.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
.|+|+|.|| |++|+++++.|.++|| +|++++|+...... +.. ..+.......+..+.......+...|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~-------l~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI-KVTVACRTLESAKK-------LSA--GVQHSTPISLDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC-EEEEEESCHHHHHH-------HHT--TCTTEEEEECCTTCHHHHHHHHTTSSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECChHHHHH-------HHh--cccccccccccccchhhhHhhhhccce
Confidence 579999987 9999999999999995 99999998862211 111 123455556677788888888888898
Q ss_pred EEEcc
Q 012270 88 VFYVD 92 (467)
Q Consensus 88 Vih~a 92 (467)
++.+.
T Consensus 71 ~i~~~ 75 (182)
T d1e5qa1 71 VISLI 75 (182)
T ss_dssp EEECS
T ss_pred eEeec
Confidence 88554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.55 E-value=0.0002 Score=58.15 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=69.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcCC-CCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
+||.|+|+ |.+|+.++..|+.++. .+++++|+.+......... +.+... .+......+|. +.++++|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D---l~~~~~~~~~~~~~~~~~-------~~~~~ad 70 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD---INHGLPFMGQMSLYAGDY-------SDVKDCD 70 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH---HTTSCCCTTCEEEC--CG-------GGGTTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee---eccCcccCCCeeEeeCcH-------HHhCCCc
Confidence 47999997 9999999999999875 3899999877532111111 111111 12333333332 3467899
Q ss_pred EEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
+|+-+|+... ...+.......|..-.+.+++.+++++.+-++
T Consensus 71 ivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ 113 (142)
T d1y6ja1 71 VIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 113 (142)
T ss_dssp EEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred eEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceE
Confidence 9999999443 33556678899999999999999998754433
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.46 E-value=7.6e-05 Score=60.88 Aligned_cols=36 Identities=28% Similarity=0.276 Sum_probs=28.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQ 43 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~ 43 (467)
+|+|.|.||||++|+.|++.|.+++| .++..+..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~ 39 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE 39 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence 58999999999999999999976654 3677665443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.41 E-value=0.00018 Score=58.89 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCC--cCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
..+||.|+|+ |++|++++..|+.+|. .++.++|+.+......... +.+ ......+....+|. +.++
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D---l~~~~~~~~~~~~~~~~d~-------~~l~ 73 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD---FNHGKVFAPKPVDIWHGDY-------DDCR 73 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHHHTTSSSSCCEEEECCG-------GGTT
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc---HhhCccccCCCeEEEECCH-------HHhc
Confidence 4679999997 9999999999999874 3899999876421000000 111 11123344444554 3466
Q ss_pred CCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
++|+||.+++... ...........|..-.+.+++..++++.+-++
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ 119 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLF 119 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 8999999999443 33445667788999999999998888654333
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.39 E-value=0.00023 Score=57.81 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=72.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|||.|+|+ |.+|++++..|+..|. .++.++|+.+......... +.+. ........... .|. ++++++
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d---~~~~~~~~~~~~~i~~~--~~~----~~~~da 70 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALD---MYESGPVGLFDTKVTGS--NDY----ADTANS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHH---HHTTHHHHTCCCEEEEE--SCG----GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhh---hhcccchhcccceEEec--CCH----HHhcCC
Confidence 68999996 9999999999999874 3899999877521111000 0000 01122333322 222 246789
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
|+|+-+||... ...+.......|..-.+.+++.+++++.+-++.+
T Consensus 71 dvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiviv 116 (142)
T d1guza1 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116 (142)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred eEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 99999999443 3345667788999999999999998865444433
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.37 E-value=0.00018 Score=58.37 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=73.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEE-EecCCCHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYH-QVDVRDISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~-~~Dl~d~~~l~~~~~~ 84 (467)
|||.|+|+ |.+|++++..|+.+|. .++.++|+.+......... +.+. ......... ..|. +.+++
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alD---l~~~~~~~~~~~~i~~~~d~-------~~~~~ 69 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD---LAHAAAGIDKYPKIVGGADY-------SLLKG 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH---HHHHHHTTTCCCEEEEESCG-------GGGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHH---HhhhccccCCCCccccCCCH-------HHhcc
Confidence 78999996 9999999999998875 3899999876521100000 0010 011112222 2233 24668
Q ss_pred CCEEEEcccCC-CCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
+|+||-.|+.. ....+.......|..-...+.+.+++.+.+-++.+-|
T Consensus 70 adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 70 SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred ccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 99999999843 3344567788889999999999999987654544443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.33 E-value=0.00037 Score=58.94 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~ 40 (467)
|++|.|.|||||+|+.|++.|.++.+.++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 689999999999999999999998655665553
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=0.00023 Score=57.60 Aligned_cols=112 Identities=15% Similarity=0.058 Sum_probs=73.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc-CCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
|||.|+|+ |.+|+.++..|+.++. .++.++|+.+......... +.+. ..........+|. +.++++|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~D---l~~~~~~~~~~~~~~~~~-------~~~~~ad 69 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALD---LIHGTPFTRRANIYAGDY-------ADLKGSD 69 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHHHGGGSCCCEEEECCG-------GGGTTCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcc---ccccccccccccccCCcH-------HHhcCCC
Confidence 68999997 9999999999988875 3899999876421100000 0000 0112334444433 2367899
Q ss_pred EEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
+|+-+|+... ...........|..-.+.+++..++.+.+-++.+-
T Consensus 70 ivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivv 115 (140)
T d1a5za1 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVV 115 (140)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred EEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEe
Confidence 9999998543 33445667888999999999999998765555443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.28 E-value=0.00037 Score=58.59 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=73.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC------cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 81 (467)
..+|.||||+|.||++++..|.+.+. -.++++|............. .+.+ ...+....+..- .+ ..++
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~m-dl~d-~a~~~~~~~~~~-~~---~~~~ 97 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM-ELED-SLYPLLREVSIG-ID---PYEV 97 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHT-TTCTTEEEEEEE-SC---HHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhh-hhcc-cccccccCcccc-cc---chhh
Confidence 34799999999999999998886421 15677776553110000000 0000 111222322221 12 3567
Q ss_pred HhCCCEEEEcccCC-CCCCChhhHHHhhHHHHHHHHHHHHhCC--CCeEEEEcC
Q 012270 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNST 132 (467)
Q Consensus 82 ~~~~D~Vih~aa~~-~~~~~~~~~~~~nv~g~~~ll~aa~~~~--v~r~v~~SS 132 (467)
++++|+||-++|.. .........+..|..-.+.+.+++.++. --+++.+|.
T Consensus 98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 88999999999944 3445667788999999999999999853 235555543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.27 E-value=0.00053 Score=56.15 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..+++|.|+||.|.+|+++++.|.++| |+|++.||...
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~~ 44 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASG-YPISILDREDW 44 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCG
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEecccccc
Confidence 357899999999999999999999999 59999998654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.18 E-value=0.00065 Score=55.82 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc------EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
.+|||.|+||+|++|++++..|...+.. ...+++-........... .............+...-.+ .+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~ 76 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVV--MELEDCAFPLLAGLEATDDP----KV 76 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH--HHHHTTTCTTEEEEEEESCH----HH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCch--hhhhccccccccccccCCch----hh
Confidence 5689999999999999999999886531 123333222100000000 00001112334444443322 46
Q ss_pred HHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCC--CeEEEEcC
Q 012270 81 VLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNST 132 (467)
Q Consensus 81 ~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v--~r~v~~SS 132 (467)
+++++|+||-+||... ...+.......|..-.+.+.+.+.+... ..++.+|.
T Consensus 77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 7889999999999543 3445667888999999999999988532 24544453
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.17 E-value=0.00015 Score=61.87 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=32.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|||.|+||+|.+|+.|++.|++.|| +|++.+|++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHH
Confidence 7899999999999999999999995 9999999765
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.13 E-value=0.00015 Score=59.92 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC------cEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
++|||.|+||+|.+|++++..|...+- -+++++|............. .+.. ...+....+..--. ..+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~----~~~ 75 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM-ELQD-CALPLLKDVIATDK----EEI 75 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHH-TCCTTEEEEEEESC----HHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhh-hhcc-cccccccccccCcc----ccc
Confidence 578999999999999999999886432 15666666543110000000 0000 11122333332221 246
Q ss_pred HHhCCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhC-CCC-eEEEEc
Q 012270 81 VLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACREC-KVR-RLVYNS 131 (467)
Q Consensus 81 ~~~~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~-~v~-r~v~~S 131 (467)
+++++|+||-+++... ...+....++.|..-.+.+.+...+. +-. .++.+|
T Consensus 76 ~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 76 AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 7788999999999433 33344556788999999999888764 432 344444
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.10 E-value=0.00046 Score=55.92 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=72.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCcC-CCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.||.|+|+ |.+|++++..|+.+|. .++.++|+.+......... +.+.. ..+.......+ |. +.++++|
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D---l~~a~~~~~~~~i~~~~--~~----~~~~daD 71 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD---MQHGSSFYPTVSIDGSD--DP----EICRDAD 71 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH---HHHTGGGSTTCEEEEES--CG----GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH---HHhccccCCCceeecCC--CH----HHhhCCc
Confidence 57999997 9999999999999885 3899999877421100000 11100 01122332222 21 2356799
Q ss_pred EEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
+||-+||... ...+.......|..-.+.+++.+++++.+-++.
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~i 115 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 115 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEE
Confidence 9999999543 335566788999999999999999887654443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0015 Score=50.20 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=52.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh--CC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 85 (467)
..||.|.|| |.+|+-++....+.| ++|+++|.++.. +.. .-.-+++.+|..|.+.+.+... ++
T Consensus 11 ~~kigIlGg-GQL~rMla~aA~~lG-~~v~v~d~~~~~---PA~----------~va~~~i~~~~~d~~~l~~~~~~~~~ 75 (111)
T d1kjqa2 11 ATRVMLLGS-GELGKEVAIECQRLG-VEVIAVDRYADA---PAM----------HVAHRSHVINMLDGDALRRVVELEKP 75 (111)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTT-CEEEEEESSTTC---GGG----------GGSSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHCC-CEEEEEcCCCCC---chh----------hcCCeEEECCCCCHHHHHHHHHhhCC
Confidence 468999996 999999999999999 599999987651 100 0123678899999999988775 57
Q ss_pred CEEE
Q 012270 86 STVF 89 (467)
Q Consensus 86 D~Vi 89 (467)
|+|-
T Consensus 76 DviT 79 (111)
T d1kjqa2 76 HYIV 79 (111)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 9885
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.03 E-value=0.00053 Score=55.51 Aligned_cols=111 Identities=6% Similarity=0.043 Sum_probs=67.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEE-EecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYH-QVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~-~~Dl~d~~~l~~~~~~~ 85 (467)
+||.|+|+ |.+|+.++-.|..++-.++.++|..+......... +.+. ......... ..|.. .+.++
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~D---l~~~~~~~~~~~~i~~~~d~~-------~~~~a 70 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALD---LYEASPIEGFDVRVTGTNNYA-------DTANS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHH---HHTTHHHHTCCCCEEEESCGG-------GGTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHH---hhccccccCCCCEEEecCcHH-------HhcCC
Confidence 58999996 99999999999888755899999866421100000 0000 001122222 23332 24578
Q ss_pred CEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
|+||-+|+... ...+.......|..-.+.+++...+++.+-++.+
T Consensus 71 dvvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aiviv 116 (142)
T d1uxja1 71 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 116 (142)
T ss_dssp SEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEE
T ss_pred CEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEE
Confidence 99999999443 2334455678899999999999999876545444
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.01 E-value=0.00082 Score=55.37 Aligned_cols=114 Identities=12% Similarity=0.022 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCC--cCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
+.+||.|+|+ |.+|+.++..|..+|. .++.++|+.+......... +.+ ...........+|.. .+.
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alD---l~h~~~~~~~~~~~~~~d~~-------~~~ 87 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMD---LQHGSLFLQTPKIVADKDYS-------VTA 87 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH---HHHTGGGCCCSEEEECSSGG-------GGT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHH---HhccccccCCCeEEeccchh-------hcc
Confidence 4569999996 9999999999999986 3899999876422111000 001 011112222233332 356
Q ss_pred CCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCe-EEEEc
Q 012270 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (467)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r-~v~~S 131 (467)
++|+|+..|+... ...+.......|..-.+.++...++.+.+- ++.+|
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 8999999999443 334556778889999999999999886543 44444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.97 E-value=0.001 Score=54.31 Aligned_cols=113 Identities=8% Similarity=0.046 Sum_probs=71.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
.+||.|+|+ |.+|++++..|..++-.++.++|+.+......... +.+. ...........| +. +.++++
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~D---l~~~~~~~~~~~~v~~~~--~~----~~~~~a 72 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALD---TSHTNVMAYSNCKVSGSN--TY----DDLAGA 72 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH---HHTHHHHHTCCCCEEEEC--CG----GGGTTC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecc---hhhhccccCCCcEEEecc--cc----cccCCC
Confidence 468999996 99999999888887766999999876421110000 1110 011122222222 21 345679
Q ss_pred CEEEEcccCCCC------CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 86 STVFYVDATDLN------TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 86 D~Vih~aa~~~~------~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
|+|+-+++.... ..+.......|..-.+.+++.+++.+.+-++.+
T Consensus 73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aiviv 123 (150)
T d1t2da1 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 123 (150)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999999994321 123456788999999999999999876555444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.001 Score=55.04 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|||+|+|+ |.+|+.++..|.+.|| +|++++|.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~-~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH-EVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-ceEEEEcCHH
Confidence 79999998 9999999999999995 9999999875
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.81 E-value=0.00088 Score=54.40 Aligned_cols=112 Identities=15% Similarity=0.063 Sum_probs=70.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
+||.|+|+ |.+|+.++..|+.+|. .+++++|+.+......... +.+. ..........+|. +.++++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~D---l~~a~~~~~~~~~~~~~d~-------~~l~~a 70 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID---FQDAMANLEAHGNIVINDW-------AALADA 70 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH---HHHHGGGSSSCCEEEESCG-------GGGTTC
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHh---hhccccccCCccceeccCH-------HHhccc
Confidence 68999995 9999999999998874 3899999876521100000 1111 1112333444443 235789
Q ss_pred CEEEEcccCCCC-----CCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 86 STVFYVDATDLN-----TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 86 D~Vih~aa~~~~-----~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
|+||-+||.... ..+-....+.|..-.+.+.+..++.+.+-++.+-
T Consensus 71 diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivv 121 (146)
T d1hyha1 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121 (146)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999984321 1122345678999999999999998765454433
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.00022 Score=59.98 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=29.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~ 42 (467)
|+||.|.||||++|+.|++.|.++.+.++..+...
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~ 35 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR 35 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence 67999999999999999999998775577666543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.72 E-value=0.00094 Score=54.97 Aligned_cols=110 Identities=14% Similarity=0.035 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCCccCCCCcCCCCCCC--cCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
+..||.|+|+ |.+|++++..|..+|. .++.++|+.+......... +.+ ............|. +.+.
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alD---l~~~~~~~~~~~~~~~~d~-------~~~~ 86 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALD---LQHGSLFLSTPKIVFGKDY-------NVSA 86 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHH---HHHTTTTCSCCEEEEESSG-------GGGT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHH---HhCcchhcCCCeEEeccch-------hhhc
Confidence 3458999996 9999999999999985 3899999876421100000 111 01111222333343 2346
Q ss_pred CCCEEEEcccCCC-CCCChhhHHHhhHHHHHHHHHHHHhCCCCeE
Q 012270 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127 (467)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~ 127 (467)
++|+||-.|+... ...+.....+.|..-.+.++...++++.+-+
T Consensus 87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~i 131 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCK 131 (159)
T ss_dssp TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCE
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 7899999998432 2234445678899988888888887765433
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00064 Score=55.72 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=56.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
.+|+|.|. |-+|+.+++.|.++| ++|++++..+..... ........++.++.||.+|++.++++ ++.+|+
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~-------~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~ 74 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIK-------QLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRA 74 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHH-------HHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHHH-------HHHHhhcCCcEEEEccCcchHHHHHhccccCCE
Confidence 46889988 999999999999999 589999876531100 00112235789999999999998876 567999
Q ss_pred EEEcc
Q 012270 88 VFYVD 92 (467)
Q Consensus 88 Vih~a 92 (467)
||-+.
T Consensus 75 vi~~~ 79 (153)
T d1id1a_ 75 ILALS 79 (153)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 98554
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0044 Score=53.92 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=53.4
Q ss_pred CCCCCEEEEEcC----------------CChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEE
Q 012270 5 EAIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68 (467)
Q Consensus 5 ~~~~~~ilVtGa----------------tGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~ 68 (467)
...+|+||||+| ||-.|.+|++++.++|+ +|+++.-..+. ..++++..+
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-~V~li~g~~~~--------------~~p~~~~~~ 67 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPVSL--------------PTPPFVKRV 67 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSCCC--------------CCCTTEEEE
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-chhhhhccccc--------------Ccccccccc
Confidence 346789999876 79999999999999995 99998765431 112355555
Q ss_pred EecCCCHHHHH----HHHhCCCEEEEcccCCC
Q 012270 69 QVDVRDISQIK----KVLEGASTVFYVDATDL 96 (467)
Q Consensus 69 ~~Dl~d~~~l~----~~~~~~D~Vih~aa~~~ 96 (467)
. +...+++. +.+.++|++|++||+.+
T Consensus 68 ~--~~t~~~m~~~~~~~~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 68 D--VMTALEMEAAVNASVQQQNIFIGCAAVAD 97 (223)
T ss_dssp E--CCSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred e--ehhhHHHHHHHHhhhccceeEeeeechhh
Confidence 3 34444444 33467999999999554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.65 E-value=0.00078 Score=56.73 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=31.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.|+|.|+|+ |.+|..++..|.++|| +|.+++|++.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~-~V~~~~r~~~ 35 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQ-SVLAWDIDAQ 35 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC-EEEEEECCHH
Confidence 379999998 9999999999999995 9999999764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.62 E-value=0.0013 Score=54.45 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=30.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|||.|.|. |.+|+.+++.|.+.|+ +|+++||++.
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~-~V~~~d~~~~ 34 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGH-YLIGVSRQQS 34 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC-EEEEEECCch
Confidence 78999976 9999999999999994 9999999864
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.61 E-value=0.0053 Score=47.16 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=65.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
...+++|+|.|| |-+|..-++.|++.| .+|++++...... +.......+++++..+..+. .+.+
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~g-a~v~v~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~-----dl~~ 72 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAG-ARLTVNALTFIPQ---------FTVWANEGMLTLVEGPFDET-----LLDS 72 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTT-BEEEEEESSCCHH---------HHHHHTTTSCEEEESSCCGG-----GGTT
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEeccCChH---------HHHHHhcCCceeeccCCCHH-----HhCC
Confidence 346899999988 999999999999999 5899988755411 11222345678877766543 2567
Q ss_pred CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
++.|+-+.+ +. +. ...+.+.|++.|+ +|++..
T Consensus 73 ~~lv~~at~------d~----~~----n~~i~~~a~~~~i--lVNv~D 104 (113)
T d1pjqa1 73 CWLAIAATD------DD----TV----NQRVSDAAESRRI--FCNVVD 104 (113)
T ss_dssp CSEEEECCS------CH----HH----HHHHHHHHHHTTC--EEEETT
T ss_pred CcEEeecCC------CH----HH----HHHHHHHHHHcCC--EEEeCC
Confidence 888884432 11 12 2467888998876 676554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.59 E-value=0.0005 Score=58.22 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC---HHHHHHHH-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVL- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~- 82 (467)
++.+|||+||+|-+|...++.....| .+|+++++++.+. +.....+...+ .|..+ .+.+.+..
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~-----------~~~~~~Ga~~v-i~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKI-----------AYLKQIGFDAA-FNYKTVNSLEEALKKAS 95 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHH-----------HHHHHTTCSEE-EETTSCSCHHHHHHHHC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHH-----------HHHHhhhhhhh-cccccccHHHHHHHHhh
Confidence 46799999999999999999999999 5999998876421 11111223322 23333 33333333
Q ss_pred -hCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCcccc
Q 012270 83 -EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (467)
Q Consensus 83 -~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vy 136 (467)
+++|+||++.+.. .....+++++..| +++.++..+.|
T Consensus 96 ~~Gvd~v~D~vG~~---------------~~~~~~~~l~~~G--~~v~~G~~~~~ 133 (182)
T d1v3va2 96 PDGYDCYFDNVGGE---------------FLNTVLSQMKDFG--KIAICGAISVY 133 (182)
T ss_dssp TTCEEEEEESSCHH---------------HHHHHGGGEEEEE--EEEECCCGGGT
T ss_pred cCCCceeEEecCch---------------hhhhhhhhccCCC--eEEeecceeec
Confidence 3599999988611 1123344444444 67777766655
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.53 E-value=0.0012 Score=56.74 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=30.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|.| .||+|..++..|.+.|+ +|+++|.++.
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~-~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH-EVIGVDVSST 34 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 7899995 59999999999999995 9999998664
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.48 E-value=0.0011 Score=55.49 Aligned_cols=74 Identities=18% Similarity=0.098 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
++.+|+|+||+|-+|...++.+...| .+|+++++++.+. +....-+.+.+ .|..+...-....+++|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~-----------~~~~~lGa~~~-i~~~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKL-----------ALPLALGAEEA-ATYAEVPERAKAWGGLD 93 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGS-----------HHHHHTTCSEE-EEGGGHHHHHHHTTSEE
T ss_pred CCCEEEEEeccccchhhhhhhhcccc-ccccccccccccc-----------cccccccccee-eehhhhhhhhhcccccc
Confidence 56799999999999999999999999 5899988866411 00111233332 25555433333456799
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+||.+.|
T Consensus 94 ~v~d~~G 100 (171)
T d1iz0a2 94 LVLEVRG 100 (171)
T ss_dssp EEEECSC
T ss_pred ccccccc
Confidence 9999876
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.0026 Score=50.25 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=49.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEE-EEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
|||.|.|++|-.|+.+.+.+.++|+ ++. .++++.. +.++++|+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~-----------------------------------~~~~~~DV 44 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGV-----------------------------------EELDSPDV 44 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEE-----------------------------------EECSCCSE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcH-----------------------------------HHhccCCE
Confidence 6899999999999999999999996 554 3343221 01245799
Q ss_pred EEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
||.+..+ .++...++.|.+.++ ++|.
T Consensus 45 vIDFS~p---------------~~~~~~l~~~~~~~~-p~Vi 70 (128)
T d1vm6a3 45 VIDFSSP---------------EALPKTVDLCKKYRA-GLVL 70 (128)
T ss_dssp EEECSCG---------------GGHHHHHHHHHHHTC-EEEE
T ss_pred EEEecCH---------------HHHHHHHHHHHhcCC-CEEE
Confidence 9977642 245678889998887 4543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.44 E-value=0.0084 Score=48.83 Aligned_cols=32 Identities=28% Similarity=0.272 Sum_probs=25.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDS 41 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r 41 (467)
+|.|.|||||+|+.|++.|.++.+ .++..+..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s 36 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 36 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence 799999999999999998888752 25555543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.016 Score=42.64 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=58.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
-.+++|+|.|. |-.|.++++.|.++| .+|++.|....... .+.. ........+.. +. ..+.++
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g-~~v~~~D~~~~~~~---------~~~~-~~~~~~~~~~~-~~----~~~~~~ 65 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARG-VTPRVMDTRMTPPG---------LDKL-PEAVERHTGSL-ND----EWLMAA 65 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESSSSCTT---------GGGS-CTTSCEEESBC-CH----HHHHHC
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCC-CEEEEeeCCcCchh---------HHHH-hhccceeeccc-ch----hhhccC
Confidence 36789999988 889999999999999 59999998664211 0111 23445555554 22 235678
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCC
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v 124 (467)
|.||-.-|.+.. ..+++.|++.|+
T Consensus 66 d~vi~SPGi~~~---------------~~~~~~a~~~gi 89 (93)
T d2jfga1 66 DLIVASPGIALA---------------HPSLSAAADAGI 89 (93)
T ss_dssp SEEEECTTSCTT---------------SHHHHHHHHTTC
T ss_pred CEEEECCCCCCC---------------CHHHHHHHHcCC
Confidence 999977764321 136677777776
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.39 E-value=0.001 Score=54.95 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
...+++|+|+|+ |-+|+.+++.|.+.|..++++.+|+..+... +.. .-+... .+.+++.+.+..
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~-------l~~---~~~~~~-----~~~~~~~~~l~~ 84 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVE-------LAR---DLGGEA-----VRFDELVDHLAR 84 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHH-------HHH---HHTCEE-----CCGGGHHHHHHT
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHH-------HHH---hhhccc-----ccchhHHHHhcc
Confidence 346789999998 9999999999999995589999997642110 000 011222 244567888899
Q ss_pred CCEEEEcccCC
Q 012270 85 ASTVFYVDATD 95 (467)
Q Consensus 85 ~D~Vih~aa~~ 95 (467)
+|+||.+.+.+
T Consensus 85 ~Divi~atss~ 95 (159)
T d1gpja2 85 SDVVVSATAAP 95 (159)
T ss_dssp CSEEEECCSSS
T ss_pred CCEEEEecCCC
Confidence 99999988744
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.22 E-value=0.007 Score=49.74 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=61.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCC----CCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
|++|.++| .|.+|+.+++.|+++| ++|.+.||++.......... ....+.. .....+..-+.+.+..+.++.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g-~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~--~~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDAV--QGADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHHH--TSCSEEEECCSCHHHHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCC-CeEEEEECchhhhhhhhhhhccccchhhhhc--cccCeeeecccchhhHHHHHh
Confidence 57899995 5999999999999999 59999999865311100000 0000111 223445555566655555543
Q ss_pred C----------CCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 84 G----------ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 84 ~----------~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
. =++|+++.... ...+..+.+.+++.|+ +|+
T Consensus 77 ~~~~~~~~l~~g~iiid~st~~-------------p~~~~~~~~~~~~~gi-~~~ 117 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLECSTIA-------------PTSARKIHAAARERGL-AML 117 (162)
T ss_dssp STTCHHHHSCTTCEEEECSCCC-------------HHHHHHHHHHHHHTTC-EEE
T ss_pred ccccccccCCCCCEEEECCCCC-------------HHHHHHHHHHHHHCCC-cEE
Confidence 2 25677665422 2345667778888776 555
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0018 Score=54.57 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
..++|+|+|+ |-.|++++..|.+.|...+++++|++........ ................|+.+.+.+.+.+..+|
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 92 (182)
T d1vi2a1 17 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA---FAQRVNENTDCVVTVTDLADQQAFAEALASAD 92 (182)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH---HHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH---HHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence 5689999988 8889999999999986689999997651100000 00000011234455788999888888888999
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+|||+..
T Consensus 93 iiIN~Tp 99 (182)
T d1vi2a1 93 ILTNGTK 99 (182)
T ss_dssp EEEECSS
T ss_pred eeccccC
Confidence 9998876
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.03 E-value=0.0038 Score=52.44 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=47.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccC----CCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQL----DPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 84 (467)
|+|.|.|+ |-.|.+++..|.+.|| +|++..|...... ...+.+..+.. .. -..++.-.+.+.+++++
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~-----~~--~~~~i~~~~~~~~~~~~ 71 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGV-----KL--NGVEIFWPEQLEKCLEN 71 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTB-----CC--CSEEEECGGGHHHHHTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcc-----hh--ccccccccccHHHHHhc
Confidence 79999988 9999999999999995 9999988543210 00001000111 11 11122234567888999
Q ss_pred CCEEEEcc
Q 012270 85 ASTVFYVD 92 (467)
Q Consensus 85 ~D~Vih~a 92 (467)
+|+||.+.
T Consensus 72 ad~Ii~av 79 (180)
T d1txga2 72 AEVVLLGV 79 (180)
T ss_dssp CSEEEECS
T ss_pred cchhhccc
Confidence 99998654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.002 Score=53.76 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH---HHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK---VLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~---~~~ 83 (467)
++.+|||+||+|-+|...++.+...| .+|+++++++.+. . ....-+...+ .|.++.+..++ ...
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~-~----------~~~~~Ga~~v-i~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQ-K----------IVLQNGAHEV-FNHREVNYIDKIKKYVG 94 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHH-H----------HHHHTTCSEE-EETTSTTHHHHHHHHHC
T ss_pred CCCEEEEEeccccccccccccccccC-ccccccccccccc-c----------cccccCcccc-cccccccHHHHhhhhhc
Confidence 56799999999999999999999999 5899988765411 0 0011123222 36666543333 322
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+||.+.+
T Consensus 95 ~~g~d~v~d~~g 106 (174)
T d1yb5a2 95 EKGIDIIIEMLA 106 (174)
T ss_dssp TTCEEEEEESCH
T ss_pred cCCceEEeeccc
Confidence 4899998876
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.91 E-value=0.0066 Score=49.80 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|-|+|- |.+|+.+++.|+++| ++|++.||++.
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G-~~V~~~d~~~~ 34 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAG-YSLVVSDRNPE 34 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCC-CeEEEEeCCcc
Confidence 68999965 999999999999999 59999999876
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.89 E-value=0.015 Score=45.70 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=60.3
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGat---GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.+++|.|.|++ +-.|..+.+.|.+.|..+|+.++.....- .+... .-++.|. =+
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i----------------~G~~~-y~sl~dl------p~ 63 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV----------------QGVKA-YKSVKDI------PD 63 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE----------------TTEEC-BSSTTSC------SS
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc----------------CCeEe-ecchhhc------CC
Confidence 56899999999 99999999999876645899887654310 01111 1233332 12
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~ 133 (467)
.+|.++-+.. ...+..+++.|.+.|++..+.+|+.
T Consensus 64 ~vDlvvi~vp---------------~~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 64 EIDLAIIVVP---------------KRFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp CCSEEEECSC---------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred CCceEEEecC---------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence 4788875542 3345578889999999988888874
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.015 Score=47.56 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEE-EEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIV-RVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..++|.|.|++|-+|+.+++.+.+....++ -+++|..+........ .+.. ....++. +.-|+ ...++.+
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~--~~~~-~~~~~~~-~~~~~------~~~~~~~ 72 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAG--ELAG-AGKTGVT-VQSSL------DAVKDDF 72 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTT--CSSS-SSCCSCC-EESCS------TTTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhh--hhhc-cccCCce-eeccH------HHHhccc
Confidence 467999999999999999999998764444 4445544321111100 0000 0111222 22333 3355679
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
|+||.+.- ..++...++.|.+.++ .+|.
T Consensus 73 DViIDFs~---------------p~~~~~~~~~a~~~~~-~~Vi 100 (162)
T d1diha1 73 DVFIDFTR---------------PEGTLNHLAFCRQHGK-GMVI 100 (162)
T ss_dssp SEEEECSC---------------HHHHHHHHHHHHHTTC-EEEE
T ss_pred ceEEEecc---------------HHHHHHHHHHHHhccc-eeEE
Confidence 99997753 3456678899999987 4553
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.74 E-value=0.0027 Score=53.37 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH---HHHHHH-
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVL- 82 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~- 82 (467)
++.+|||+||+|-+|...++.+...| .+|.++++++++. +.....+...+ .|..+++ ++.+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~-----------~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~ 91 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKR-----------EMLSRLGVEYV-GDSRSVDFADEILELTD 91 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHH-----------HHHHTTCCSEE-EETTCSTHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcccccchhhcccc-ccceeeecccccc-----------ccccccccccc-ccCCccCHHHHHHHHhC
Confidence 46799999999999999999999999 5888888765411 11112233332 3555543 333333
Q ss_pred -hCCCEEEEccc
Q 012270 83 -EGASTVFYVDA 93 (467)
Q Consensus 83 -~~~D~Vih~aa 93 (467)
+++|+||.+.+
T Consensus 92 ~~g~d~v~d~~g 103 (183)
T d1pqwa_ 92 GYGVDVVLNSLA 103 (183)
T ss_dssp TCCEEEEEECCC
T ss_pred CCCEEEEEeccc
Confidence 35899999886
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.66 E-value=0.0052 Score=51.73 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
++.||.|.|||||+|+.|++.|.++.+.++..+..
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S 38 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA 38 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence 46789999999999999999999887557766654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.55 E-value=0.0027 Score=50.15 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=50.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHH-HhCCCE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~D~ 87 (467)
|+++|.|. |-+|+.+++.|. | +.|.+++..+.. .+.....++.++.||.+|++.|.++ ++.+++
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~-~~i~vi~~d~~~-----------~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~ 65 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--G-SEVFVLAEDENV-----------RKKVLRSGANFVHGDPTRVSDLEKANVRGARA 65 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--G-GGEEEEESCTTH-----------HHHHHHTTCEEEESCTTSHHHHHHTTCTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHc--C-CCCEEEEcchHH-----------HHHHHhcCccccccccCCHHHHHHhhhhcCcE
Confidence 46888886 889999999985 4 357777776641 1112345789999999999998876 567898
Q ss_pred EEEc
Q 012270 88 VFYV 91 (467)
Q Consensus 88 Vih~ 91 (467)
++-+
T Consensus 66 vi~~ 69 (129)
T d2fy8a1 66 VIVN 69 (129)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8844
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.51 E-value=0.0092 Score=49.25 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=30.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~ 44 (467)
|++|+|+|. |.+|.++++.|.+.|+ .+|+++|+++.
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~ 37 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPE 37 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence 578999975 9999999999999984 27888998764
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.45 E-value=0.0097 Score=44.17 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHH
Q 012270 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (467)
Q Consensus 1 m~~~~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~ 80 (467)
|.......++|.+.|-.|--=+.|++.|.++| ++|.+-|+..+.. .+.+...++.+..++-.+
T Consensus 1 ~~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G-~~VsGSD~~~~~~----------~~~L~~~Gi~v~~g~~~~------ 63 (96)
T d1p3da1 1 IIPEMRRVQQIHFIGIGGAGMSGIAEILLNEG-YQISGSDIADGVV----------TQRLAQAGAKIYIGHAEE------ 63 (96)
T ss_dssp CCCCCTTCCEEEEETTTSTTHHHHHHHHHHHT-CEEEEEESCCSHH----------HHHHHHTTCEEEESCCGG------
T ss_pred CCccchhCCEEEEEEECHHHHHHHHHHHHhCC-CEEEEEeCCCChh----------hhHHHHCCCeEEECCccc------
Confidence 44455667899998774443378999999999 5999999875421 111223466665544322
Q ss_pred HHhCCCEEEEcccCC
Q 012270 81 VLEGASTVFYVDATD 95 (467)
Q Consensus 81 ~~~~~D~Vih~aa~~ 95 (467)
.+.++|.||...|..
T Consensus 64 ~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 64 HIEGASVVVVSSAIK 78 (96)
T ss_dssp GGTTCSEEEECTTSC
T ss_pred cCCCCCEEEECCCcC
Confidence 235789999888854
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.41 E-value=0.0048 Score=52.23 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCC--cCC-CCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS--ESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~--~~~-~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
.|+||.|.|| |--|++++..|.+.|| +|++.+|++....... +.+ ..+.....+.++.. .. .+.++++
T Consensus 6 ~m~KI~ViGa-G~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~------~l~~a~~ 76 (189)
T d1n1ea2 6 YLNKAVVFGS-GAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TS------DVEKAYN 76 (189)
T ss_dssp CEEEEEEECC-SHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ES------CHHHHHT
T ss_pred eeceEEEECC-CHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhccccccccccccccccccc-ch------hhhhccC
Confidence 4567999987 9999999999999995 9999998764211000 000 01122222334433 22 3577888
Q ss_pred CCCEEEEcc
Q 012270 84 GASTVFYVD 92 (467)
Q Consensus 84 ~~D~Vih~a 92 (467)
++|+||.+.
T Consensus 77 ~ad~iiiav 85 (189)
T d1n1ea2 77 GAEIILFVI 85 (189)
T ss_dssp TCSCEEECS
T ss_pred CCCEEEEcC
Confidence 999998554
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0029 Score=52.97 Aligned_cols=74 Identities=16% Similarity=0.044 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHH---HHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ---IKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~ 83 (467)
++.+|+|+||+|-+|...++.+...| .+|+++++++.+.. .....+...+ .|.++++. +.++-.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~~-----------~~~~lGa~~v-i~~~~~d~~~~v~~~t~ 94 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQ-----------SALKAGAWQV-INYREEDLVERLKEITG 94 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHH-----------HHHHHTCSEE-EETTTSCHHHHHHHHTT
T ss_pred CCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHHH-----------HHHhcCCeEE-EECCCCCHHHHHHHHhC
Confidence 46799999999999999999999999 59999988775210 0111123322 36655433 333322
Q ss_pred --CCCEEEEccc
Q 012270 84 --GASTVFYVDA 93 (467)
Q Consensus 84 --~~D~Vih~aa 93 (467)
++|+|+.+.+
T Consensus 95 g~g~d~v~d~~g 106 (179)
T d1qora2 95 GKKVRVVYDSVG 106 (179)
T ss_dssp TCCEEEEEECSC
T ss_pred CCCeEEEEeCcc
Confidence 4799998886
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0085 Score=42.41 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+.++++|+||+|-+|...++.+...| .+|+++++++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G-~~Vi~~t~s~~ 67 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRES 67 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcC-CeEEEEECCHH
Confidence 56789999999999999999999999 58999888764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.043 Score=45.06 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCe-EEEEecCCCHHHHHHHHh--
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQVDVRDISQIKKVLE-- 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~-- 83 (467)
.+.+|+|+|+ |-+|...+..+...|...|++.++++.+.. + ...-+. ..+..+-.+..+..+.++
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~--------~---a~~~Ga~~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLS--------K---AKEIGADLVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHH--------H---HHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHH--------H---HHHhCCccccccccccccccccccccc
Confidence 4568999987 999999999999999548999998775210 0 011123 334444456555554442
Q ss_pred ---CCCEEEEccc
Q 012270 84 ---GASTVFYVDA 93 (467)
Q Consensus 84 ---~~D~Vih~aa 93 (467)
++|+||.+.+
T Consensus 94 ~g~g~Dvvid~~G 106 (171)
T d1pl8a2 94 LGCKPEVTIECTG 106 (171)
T ss_dssp HTSCCSEEEECSC
T ss_pred CCCCceEEEeccC
Confidence 5899999887
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.99 E-value=0.018 Score=44.20 Aligned_cols=36 Identities=25% Similarity=0.571 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |++|-.++..|.+.| .+|+++.|.+.
T Consensus 21 ~p~~v~IiGg-G~ig~E~A~~l~~~G-~~Vtlve~~~~ 56 (117)
T d1ebda2 21 VPKSLVVIGG-GYIGIELGTAYANFG-TKVTILEGAGE 56 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred cCCeEEEECC-Cccceeeeeeecccc-cEEEEEEecce
Confidence 4689999998 999999999999999 59999998775
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.96 E-value=0.026 Score=46.34 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+++|+| +|-+|...+..+...| .+|+++++++.
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~G-a~vi~v~~~~~ 61 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYG-AFVVCTARSPR 61 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCHH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhc-ccccccchHHH
Confidence 456899997 6999999999999999 59999998775
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.90 E-value=0.02 Score=44.37 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++++|.|| |++|-.++..|.++|. +|+++.+.+.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~-~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGV-HVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccc-eEEEEeeccc
Confidence 3579999988 9999999999999994 9999998775
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.85 E-value=0.0072 Score=49.04 Aligned_cols=34 Identities=24% Similarity=0.124 Sum_probs=29.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|||.|+|. |.+|+.+++.|+++|+ +|++.++.++
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~-~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGV-EVVTSLEGRS 34 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTC-EEEECCTTCC
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCC-eEEEEcCchh
Confidence 68999965 9999999999999995 8999887665
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.77 E-value=0.0059 Score=50.48 Aligned_cols=75 Identities=9% Similarity=0.025 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+.+|+|+|+ |-+|...+..+...| .+|+++++++.+. +....-+...+.-...+.+..+...+++|
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G-~~vi~~~~~~~k~-----------~~a~~lGa~~~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSSRKR-----------EDAMKMGADHYIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSSTTH-----------HHHHHHTCSEEEEGGGTSCHHHHSCSCEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhcc-ccccccccchhHH-----------HHhhccCCcEEeeccchHHHHHhhhcccc
Confidence 5679999987 999999999888899 5999999876511 00111122222211222233344455689
Q ss_pred EEEEcccC
Q 012270 87 TVFYVDAT 94 (467)
Q Consensus 87 ~Vih~aa~ 94 (467)
+|+.+.+.
T Consensus 94 ~vi~~~~~ 101 (168)
T d1piwa2 94 LIVVCASS 101 (168)
T ss_dssp EEEECCSC
T ss_pred eEEEEecC
Confidence 99988763
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.75 E-value=0.026 Score=43.39 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |++|-.++..|.+.|. +|+++.|...
T Consensus 21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~-~Vtlv~~~~~ 56 (117)
T d1onfa2 21 ESKKIGIVGS-GYIAVELINVIKRLGI-DSYIFARGNR 56 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHTTTC-EEEEECSSSS
T ss_pred CCCEEEEECC-chHHHHHHHHHHhccc-cceeeehhcc
Confidence 4689999998 9999999999999994 9999998765
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.025 Score=43.86 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |+||-.++..|.+.|. +|+++.+.+.
T Consensus 22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~-~Vtii~~~~~ 57 (122)
T d1v59a2 22 IPKRLTIIGG-GIIGLEMGSVYSRLGS-KVTVVEFQPQ 57 (122)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CCCeEEEECC-CchHHHHHHHHHhhCc-ceeEEEeccc
Confidence 4689999988 9999999999999995 9999998775
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.66 E-value=0.042 Score=45.71 Aligned_cols=62 Identities=21% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|.|.|. |-||+.+++.|..-| .+|.+++|.+.... ..-.+++++++..+
T Consensus 40 l~gk~vgIiG~-G~IG~~va~~l~~~g-~~v~~~d~~~~~~~------------------------~~~~~~l~ell~~s 93 (181)
T d1qp8a1 40 IQGEKVAVLGL-GEIGTRVGKILAALG-AQVRGFSRTPKEGP------------------------WRFTNSLEEALREA 93 (181)
T ss_dssp CTTCEEEEESC-STHHHHHHHHHHHTT-CEEEEECSSCCCSS------------------------SCCBSCSHHHHTTC
T ss_pred ccCceEEEecc-ccccccceeeeeccc-cccccccccccccc------------------------eeeeechhhhhhcc
Confidence 45789999986 999999999999999 59999998764100 00012367888999
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+|+-+..
T Consensus 94 Div~~~~p 101 (181)
T d1qp8a1 94 RAAVCALP 101 (181)
T ss_dssp SEEEECCC
T ss_pred chhhcccc
Confidence 99886654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.028 Score=43.08 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |++|-.++..|.+.|. +|+++.|.+.
T Consensus 20 ~p~~vvIiGg-G~ig~E~A~~l~~~G~-~Vtlve~~~~ 55 (116)
T d1gesa2 20 LPERVAVVGA-GYIGVELGGVINGLGA-KTHLFEMFDA 55 (116)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CCCEEEEECC-ChhhHHHHHHhhcccc-EEEEEeecch
Confidence 4679999988 9999999999999995 9999998765
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.54 E-value=0.15 Score=39.92 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=48.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
||.|.|++|-.|+.+++.+.+....++.. +|+... .+. ....++|+|
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~------------------------------~~~--~~~~~~Dvv 48 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP------------------------------LSL--LTDGNTEVV 48 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC------------------------------THH--HHTTTCSEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc------------------------------hhh--hccccCCEE
Confidence 68999999999999999988876455443 333211 011 112468999
Q ss_pred EEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEE
Q 012270 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (467)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v 128 (467)
|.+..+. .+...++.|.+.|++ +|
T Consensus 49 IDFS~p~---------------~~~~~~~~~~~~~~~-~V 72 (135)
T d1yl7a1 49 IDFTHPD---------------VVMGNLEFLIDNGIH-AV 72 (135)
T ss_dssp EECCCTT---------------THHHHHHHHHHTTCE-EE
T ss_pred EEcccHH---------------HHHHHHHHHHhcCCC-EE
Confidence 9887533 345788899999984 44
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.011 Score=48.68 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+.+|+|.|+ |-+|...++.+...|. +++++++++.+. +....-+... ..|..+.+......+++|
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga-~~i~~~~~~~~~-----------~~a~~lGad~-~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSEAKR-----------EAAKALGADE-VVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSGGGH-----------HHHHHHTCSE-EEETTCHHHHHTTTTCEE
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccc-cchhhccchhHH-----------HHHhccCCcE-EEECchhhHHHHhcCCCc
Confidence 5679999986 8899999999999994 788888766521 0011112232 247777776666667899
Q ss_pred EEEEcccC
Q 012270 87 TVFYVDAT 94 (467)
Q Consensus 87 ~Vih~aa~ 94 (467)
+||.+.+.
T Consensus 96 ~vid~~g~ 103 (168)
T d1uufa2 96 FILNTVAA 103 (168)
T ss_dssp EEEECCSS
T ss_pred eeeeeeec
Confidence 99999873
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.47 E-value=0.03 Score=43.38 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++|+|.|| |++|-.++..|.+.|. +|+++.+.+.
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~-~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGK-KVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccce-EEEEEEecCc
Confidence 4679999987 9999999999999995 9999988764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.41 E-value=0.029 Score=42.89 Aligned_cols=36 Identities=31% Similarity=0.629 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |++|-.++..|.+.| .+|+++.+.+.
T Consensus 20 ~p~~vvIiGg-G~~G~E~A~~l~~~g-~~Vtlve~~~~ 55 (115)
T d1lvla2 20 LPQHLVVVGG-GYIGLELGIAYRKLG-AQVSVVEARER 55 (115)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHhhcc-cceEEEeeecc
Confidence 4689999988 999999999999999 49999988765
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.31 Score=42.17 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=69.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCC----CCCCc----------CCCCCeEEEEecC-
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDS----------LSSGRAEYHQVDV- 72 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~----------~~~~~v~~~~~Dl- 72 (467)
..+|+|.|+ |-+|++++..|.+.|--+++++|.+.-...+..++.- ..... ...+.+.....+.
T Consensus 30 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~ 108 (247)
T d1jw9b_ 30 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 108 (247)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence 468999996 8899999999999997799999976543222222200 00000 0024455544443
Q ss_pred CCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 73 ~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
.+.+.....+.+.|+|+.+.. |......+-++|.+.++ .+|+.+....+|
T Consensus 109 ~~~~~~~~~~~~~divid~~d--------------~~~~~~~in~~~~~~~i-p~i~g~~~~~~g 158 (247)
T d1jw9b_ 109 LDDAELAALIAEHDLVLDCTD--------------NVAVRNQLNAGCFAAKV-PLVSGAAIRMEG 158 (247)
T ss_dssp CCHHHHHHHHHTSSEEEECCS--------------SHHHHHHHHHHHHHHTC-CEEEEEEEBTEE
T ss_pred hhhccccccccccceeeeccc--------------hhhhhhhHHHHHHHhCC-Cccccccccccc
Confidence 244556677788999996642 12233455667888887 477766555443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.31 E-value=0.0089 Score=49.84 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+.+|||+||+|-+|+..++.+...| .+|++..+++.
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~ 67 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAA 67 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTT
T ss_pred CCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchH
Confidence 5689999999999999999999999 58999888765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.026 Score=47.58 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+-++|.|.|+ |.+|+.++..++..| ++|+++|+++.
T Consensus 3 ~IkkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~ 38 (192)
T d1f0ya2 3 IVKHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTED 38 (192)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred eeEEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECChH
Confidence 4579999998 999999999999999 59999999874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.14 E-value=0.011 Score=48.89 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+++|+|++|-+|...+..+...|..+|++.++++.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~ 64 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE 64 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence 46789999999999999999999998558999988764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.067 Score=43.48 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+|+|+|.|.+..+|+.|+..|.++| .+|++.+.... .+.+..+.+
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~g-atVt~~h~~t~--------------------------------~l~~~~~~A 81 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTHRFTK--------------------------------NLRHHVENA 81 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEECSSCS--------------------------------CHHHHHHHC
T ss_pred cccceEEEEeccccccHHHHHHHHHhh-ccccccccccc--------------------------------hhHHHHhhh
Confidence 468999999999999999999999999 58988765332 134556779
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||.++|..
T Consensus 82 DivI~a~G~p 91 (166)
T d1b0aa1 82 DLLIVAVGKP 91 (166)
T ss_dssp SEEEECSCCT
T ss_pred hHhhhhccCc
Confidence 9999999843
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.98 E-value=0.0098 Score=48.26 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=30.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|||.+.|+ |-+|+++++.|++.| ++|++.+|+..
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~-~~i~v~~r~~~ 34 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTP-HELIISGSSLE 34 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSS-CEEEEECSSHH
T ss_pred CEEEEEec-cHHHHHHHHHHHhCC-CeEEEEcChHH
Confidence 68999965 999999999999999 49999998765
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.96 E-value=0.043 Score=42.16 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |+||-.++..|.+.| .+|+++.+...
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G-~~Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLG-AEVTVLEAMDK 56 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcC-CceEEEEeecc
Confidence 5689999988 999999999999999 49999998765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.85 E-value=0.026 Score=46.81 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=48.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCEE
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 88 (467)
.+|-++|- |.+|+.+++.|++.| ++|+++||++.+.....+. ...... .. .....+++.+.+..+|.+
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G-~~V~v~dr~~~~~~~l~~~------~~~~~~---~~-~a~~~~~~~~~~~~~~~i 70 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHG-FVVCAFNRTVSKVDDFLAN------EAKGTK---VL-GAHSLEEMVSKLKKPRRI 70 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSTHHHHHHHHT------TTTTSS---CE-ECSSHHHHHHHBCSSCEE
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHHHHh------cccccc---cc-chhhhhhhhhhhcccceE
Confidence 47889976 999999999999999 5999999987632111000 000000 01 134566777888888998
Q ss_pred EEcc
Q 012270 89 FYVD 92 (467)
Q Consensus 89 ih~a 92 (467)
+-+.
T Consensus 71 i~~~ 74 (176)
T d2pgda2 71 ILLV 74 (176)
T ss_dssp EECS
T ss_pred EEec
Confidence 8665
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.047 Score=42.32 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |++|-.++..|.+.|. +|+++.|++.
T Consensus 21 ~pk~vvIvGg-G~iG~E~A~~l~~~G~-~Vtlv~~~~~ 56 (125)
T d3grsa2 21 LPGRSVIVGA-GYIAVEMAGILSALGS-KTSLMIRHDK 56 (125)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred cCCEEEEEcC-CccHHHHHHHHhcCCc-EEEEEeeccc
Confidence 3589999998 9999999999999994 9999999765
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.77 E-value=0.035 Score=42.97 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
.+++++|.|| |+||-.++..|.+.|. +|+++.|++
T Consensus 19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~-~Vtii~~~~ 53 (122)
T d1h6va2 19 CPGKTLVVGA-SYVALECAGFLAGIGL-DVTVMVRSI 53 (122)
T ss_dssp CCCSEEEECC-SHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred CCCeEEEECC-CccHHHHHHHHhhcCC-eEEEEEech
Confidence 4678999988 9999999999999994 999998753
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.12 Score=42.14 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..+++|+|.|-+..+|+.|+..|.++| .+|+..+.... .+.+..++.
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~g-atVt~~~~~t~--------------------------------~l~~~~~~a 83 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSKTA--------------------------------HLDEEVNKG 83 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTTCS--------------------------------SHHHHHTTC
T ss_pred cccceEEEEecCCccchHHHHHHHhcc-CceEEEecccc--------------------------------cHHHHHhhc
Confidence 468999999999999999999999999 59998776443 134556778
Q ss_pred CEEEEcccCC
Q 012270 86 STVFYVDATD 95 (467)
Q Consensus 86 D~Vih~aa~~ 95 (467)
|+||..++..
T Consensus 84 Divi~a~G~~ 93 (170)
T d1a4ia1 84 DILVVATGQP 93 (170)
T ss_dssp SEEEECCCCT
T ss_pred cchhhccccc
Confidence 9999888843
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.74 E-value=0.01 Score=49.43 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=27.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r 41 (467)
|-||.|-| .|-||+.+++.|.+++..+|+.++.
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 45899997 7999999999999987557777653
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.62 E-value=0.052 Score=42.63 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++++|.|| |++|-.++..|.+.| .+|+++.+.+.
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g-~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKAN-MHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhC-cceeeeeeccc
Confidence 4689999988 999999999999999 59999998765
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.58 E-value=0.041 Score=42.58 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..+++++|.|| |+||-.++..|.+.| .+|+++.|++.
T Consensus 23 ~~p~~~viiG~-G~iglE~A~~~~~~G-~~Vtvi~~~~~ 59 (123)
T d1dxla2 23 EIPKKLVVIGA-GYIGLEMGSVWGRIG-SEVTVVEFASE 59 (123)
T ss_dssp SCCSEEEESCC-SHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred ccCCeEEEEcc-chHHHHHHHHHHhcC-CeEEEEEEccc
Confidence 35689999988 999999999999999 59999999775
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.56 E-value=0.045 Score=47.55 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
.+.++|+|+|| |..|-..+..|.++|+ +|++++|..
T Consensus 4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G~-~V~vier~~ 39 (268)
T d1c0pa1 4 HSQKRVVVLGS-GVIGLSSALILARKGY-SVHILARDL 39 (268)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCCCcEEEECc-cHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 34678999998 9999999999999995 999999864
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.54 E-value=0.041 Score=42.47 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=31.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.++++|.|| |++|-.++..|.+.| .+|+++.|.+.
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g-~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAG-YHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTT-CEEEEECSSSC
T ss_pred CCcEEEECC-cHHHHHHHHHhhccc-ceEEEEecccc
Confidence 368999988 999999999999999 49999988764
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.19 Score=40.94 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=53.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecC--CCHHHHHHHH
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVL 82 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~ 82 (467)
+..+|+++|.|-+.-+|+-|+..|+++| .+|+..+............ ..- ......|+ ..++.+++..
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~g-aTVt~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~lk~~~ 95 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGES-------LKL--NKHHVEDLGEYSEDLLKKCS 95 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCC-------SSC--CCCEEEEEEECCHHHHHHHH
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCC-CEEEEeccccccccccccc-------eee--eeeccccccccchhHHhhcc
Confidence 4568999999999999999999999999 5998887654211000000 000 01112222 3466788888
Q ss_pred hCCCEEEEcccCC
Q 012270 83 EGASTVFYVDATD 95 (467)
Q Consensus 83 ~~~D~Vih~aa~~ 95 (467)
..+|+||..++..
T Consensus 96 ~~aDIvIsavG~p 108 (171)
T d1edza1 96 LDSDVVITGVPSE 108 (171)
T ss_dssp HHCSEEEECCCCT
T ss_pred ccCCEEEEccCCC
Confidence 8899999888743
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=93.48 E-value=0.035 Score=44.68 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=31.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.++|+ |-+|+++++.|++.|.++|.+.+|++.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~ 35 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAE 35 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence 68999977 999999999999998569999999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.052 Score=38.15 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
||+|.|.|| |.+|+-++.+..+.| .+|.+++..+.
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG-~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLG-IAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGT-EEEEEECTTSC
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcC-CEEEEEcCCCC
Confidence 578999988 999999999999999 69999997654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.24 E-value=0.065 Score=41.54 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |+||-.++..|.+.| .+|+++.+.+.
T Consensus 25 ~p~~vvIiGg-G~IG~E~A~~~~~~G-~~Vtive~~~~ 60 (125)
T d1ojta2 25 VPGKLLIIGG-GIIGLEMGTVYSTLG-SRLDVVEMMDG 60 (125)
T ss_dssp CCSEEEEESC-SHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred cCCeEEEECC-CHHHHHHHHHhhcCC-CEEEEEEeecc
Confidence 4689999998 999999999999999 59999998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.18 E-value=0.023 Score=46.44 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+-+++|.|+ |-.|..-++.+.+.| -+|+++|.+..... + +.... ...++ .-..+.+.+.+.++.+|
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lG-A~V~~~D~~~~~l~----~---l~~~~-~~~~~---~~~~~~~~l~~~~~~aD 97 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLG-AQVQIFDINVERLS----Y---LETLF-GSRVE---LLYSNSAEIETAVAEAD 97 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHH----H---HHHHH-GGGSE---EEECCHHHHHHHHHTCS
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCC-CEEEEEeCcHHHHH----H---HHHhh-cccce---eehhhhhhHHHhhccCc
Confidence 4568999988 999999999999999 59999999765210 0 11111 11222 33467788999999999
Q ss_pred EEEEcccCCCC
Q 012270 87 TVFYVDATDLN 97 (467)
Q Consensus 87 ~Vih~aa~~~~ 97 (467)
+||-++-.+..
T Consensus 98 ivI~aalipG~ 108 (168)
T d1pjca1 98 LLIGAVLVPGR 108 (168)
T ss_dssp EEEECCCCTTS
T ss_pred EEEEeeecCCc
Confidence 99988875543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.94 E-value=0.023 Score=41.36 Aligned_cols=71 Identities=10% Similarity=-0.040 Sum_probs=47.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCCE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~ 87 (467)
.|||-++|-.|-==+.|++.|.++| +.|.+-|+..+.. .+.+...++++..+. +++. ++++|.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G-~~VsGSD~~~~~~----------t~~L~~~Gi~i~~gh--~~~~----i~~~d~ 63 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNG-NDVYGSNIEETER----------TAYLRKLGIPIFVPH--SADN----WYDPDL 63 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSSCCHH----------HHHHHHTTCCEESSC--CTTS----CCCCSE
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCC-CeEEEEeCCCChh----------HHHHHHCCCeEEeee--cccc----cCCCCE
Confidence 3789999876655567999999999 5999999876521 112333456654431 1111 356899
Q ss_pred EEEcccCC
Q 012270 88 VFYVDATD 95 (467)
Q Consensus 88 Vih~aa~~ 95 (467)
||...|..
T Consensus 64 vV~SsAI~ 71 (89)
T d1j6ua1 64 VIKTPAVR 71 (89)
T ss_dssp EEECTTCC
T ss_pred EEEecCcC
Confidence 99888865
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.82 E-value=0.11 Score=42.47 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=32.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+.+|||+||+|-+|...++.....| .+|+++.++..
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~ 59 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNRE 59 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSS
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHH
Confidence 4579999999999999999999999 59999988765
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.80 E-value=0.094 Score=40.66 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=56.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhC-C
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-A 85 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-~ 85 (467)
..+++|.|| |.+|+.|++++..+..+++++ +|-++.+. ... -.++..+. .+.+.+..++ +
T Consensus 3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~----------G~~--I~Gi~V~~-----~~~l~~~~~~~i 64 (126)
T d2dt5a2 3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKV----------GRP--VRGGVIEH-----VDLLPQRVPGRI 64 (126)
T ss_dssp CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTT----------TCE--ETTEEEEE-----GGGHHHHSTTTC
T ss_pred CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhc----------CCE--ECCEEEec-----HHHHHHHHhhcc
Confidence 458999987 999999999876554355554 45444311 111 12455542 2345555443 5
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccc
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~v 135 (467)
+.++-+.. ....+.+++.|.++|++.+.-++....
T Consensus 65 ~iai~~i~---------------~~~~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 65 EIALLTVP---------------REAAQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp CEEEECSC---------------HHHHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred cEEEEeCC---------------HHHHHHHHHHHHHcCCCEEeecCceee
Confidence 55543322 123356888888899988777665543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.75 E-value=0.059 Score=44.66 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|+|+ |-+|...+..+...|...|+++++++.
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccc
Confidence 4579999987 999999999999999437999998775
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.49 E-value=0.17 Score=39.89 Aligned_cols=86 Identities=9% Similarity=-0.042 Sum_probs=56.1
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHh
Q 012270 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGat---GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 83 (467)
+.++|.|.|++ +-.|..+++.|++.| ++|+.++.....- .+... .-++ .++-+
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~~~~i----------------~G~~~-~~sl------~dlp~ 73 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKYEEV----------------LGRKC-YPSV------LDIPD 73 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEE----------------TTEEC-BSSG------GGCSS
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCccccc----------------CCCcc-cccc------cccCc
Confidence 35789999998 889999999999999 5999887643210 01111 1122 22223
Q ss_pred CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEc
Q 012270 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (467)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~S 131 (467)
.+|.|+-+.. ...+..+++.|.+.|++.+++.+
T Consensus 74 ~iD~v~i~vp---------------~~~~~~~~~e~~~~g~k~v~~~~ 106 (139)
T d2d59a1 74 KIEVVDLFVK---------------PKLTMEYVEQAIKKGAKVVWFQY 106 (139)
T ss_dssp CCSEEEECSC---------------HHHHHHHHHHHHHHTCSEEEECT
T ss_pred cceEEEEEeC---------------HHHHHHHHHHHHHhCCCEEEEec
Confidence 4787774432 33456788888888997666533
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.38 E-value=0.24 Score=37.62 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=53.6
Q ss_pred CEEEEEcCC---ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 9 RTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 9 ~~ilVtGat---GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
|+|.|.|++ +-.|..+++.|++.| ++|+.++.....- .+...+ -++ .++=+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP~~~~i----------------~G~~~y-~sl------~~lp~~~ 57 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPNYDEI----------------EGLKCY-RSV------RELPKDV 57 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEE----------------TTEECB-SSG------GGSCTTC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEccccccc----------------cCcccc-ccc------hhccccc
Confidence 689999998 889999999999999 5999886543200 111111 122 2222357
Q ss_pred CEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEE
Q 012270 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (467)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~ 129 (467)
|.++-+.. ...+..+++.|.+.|++.+++
T Consensus 58 D~vvi~vp---------------~~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 58 DVIVFVVP---------------PKVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp CEEEECSC---------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeC---------------HHHHHHHHHHHHhcCCceEEe
Confidence 88774432 334567888888999986654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.37 E-value=0.059 Score=44.36 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|.|+ |-+|...+..+...|...|++.++++.
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~ 64 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD 64 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHH
Confidence 4578999999 568999999999998568999998876
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.32 E-value=0.03 Score=46.28 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|.|+ |-+|...+..+...|...|.+.++++.
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~ 64 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVES 64 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHH
Confidence 4678999987 999999999998888656677777654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.17 E-value=0.12 Score=39.39 Aligned_cols=36 Identities=17% Similarity=0.012 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++++|.|| |++|-.++..|.+.| .+|+++.|.+.
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g-~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATG-RRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcc-hhheEeeccch
Confidence 4689999988 999999999999999 49999998765
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.10 E-value=0.72 Score=34.86 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCC----------hhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHH
Q 012270 7 IPRTCVVLNGRG----------FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS 76 (467)
Q Consensus 7 ~~~~ilVtGatG----------fiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 76 (467)
..++|+|+|+.. |-+.+.+++|.+.| +++++++.++...... ..-..-+...-...+
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g-~~~IliN~NPeTVstd------------~d~aD~lYfeplt~e 69 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG-YETIMVNCNPETVSTD------------YDTSDRLYFEPVTLE 69 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT-CEEEEECCCTTSSTTS------------TTSSSEEECCCCSHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC-CeEEEEecChhhhhcC------------hhhcCceEEccCCHH
Confidence 457999999843 78999999999999 6999999888632111 111223344455677
Q ss_pred HHHHHHh--CCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCC
Q 012270 77 QIKKVLE--GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (467)
Q Consensus 77 ~l~~~~~--~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~ 125 (467)
.+.+.++ ++|.|+-..| -+-..|+.....+.|++
T Consensus 70 ~v~~Ii~~E~p~~ii~~~G---------------GQtalnla~~L~~~gv~ 105 (121)
T d1a9xa4 70 DVLEIVRIEKPKGVIVQYG---------------GQTPLKLARALEAAGVP 105 (121)
T ss_dssp HHHHHHHHHCCSEEECSSS---------------THHHHTTHHHHHHTTCC
T ss_pred HHHHHHHHhCCCEEEeehh---------------hhhHHHHHHHHHHcCCc
Confidence 7777764 6898873332 12234455556677764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.09 E-value=0.09 Score=42.72 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCc-EEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~-~V~~~~r~~~ 44 (467)
+|||+|.|| |++|-.++..|.+.++. +|+++++.+.
T Consensus 2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 689999998 99999999999998852 8999987663
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.05 E-value=0.053 Score=45.30 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.-++|.|.|+ |.+|+.++..++..| ++|+++|+++.
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~ 38 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINEH 38 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCHH
Confidence 3578999998 999999999999999 59999999764
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.82 Score=34.93 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCCCCCCCEEEEEcCC----------ChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEe
Q 012270 1 MPFDEAIPRTCVVLNGR----------GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (467)
Q Consensus 1 m~~~~~~~~~ilVtGat----------GfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 70 (467)
|+. ....++|||+|+. -|-+.+.+++|.+.| ++++.++.++....... .-..-+..
T Consensus 1 mp~-~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g-~~~iliN~NP~TVstd~------------d~aD~lYf 66 (127)
T d1a9xa3 1 MPK-RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG-YRVINVNSNPATIMTDP------------EMADATYI 66 (127)
T ss_dssp CCC-CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT-CEEEEECSCTTCGGGCG------------GGSSEEEC
T ss_pred CCC-CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC-CeEEEecCchHhhhcCh------------hhcceeee
Confidence 544 3356899999993 478999999999999 69999998876311100 11223445
Q ss_pred cCCCHHHHHHHHh--CCCEEEEcc
Q 012270 71 DVRDISQIKKVLE--GASTVFYVD 92 (467)
Q Consensus 71 Dl~d~~~l~~~~~--~~D~Vih~a 92 (467)
.-...+.+.+.++ ++|.|+-..
T Consensus 67 ePlt~e~v~~Ii~~E~pd~il~~~ 90 (127)
T d1a9xa3 67 EPIHWEVVRKIIEKERPDAVLPTM 90 (127)
T ss_dssp SCCCHHHHHHHHHHHCCSEEECSS
T ss_pred ecCCHHHHHHHHHHhCcCCeEEEe
Confidence 5567788888875 699988443
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.77 E-value=0.17 Score=41.39 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~ 40 (467)
|.+||.|-| .|-||+.+++.+.++...+|+.+.
T Consensus 1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEe
Confidence 457999998 599999999999987654665554
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.71 E-value=0.024 Score=47.53 Aligned_cols=35 Identities=29% Similarity=0.045 Sum_probs=28.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
.+|||+||+|-+|+..++.+...|...|+..++++
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~ 66 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ 66 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchH
Confidence 68999999999999999999889954555555543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.69 E-value=0.074 Score=44.13 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.++||+|.|| |..|-..+..|.++|+.+|+++.|.+.
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 4689999998 999999999999999535999998764
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=91.58 E-value=0.34 Score=39.35 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEE-EcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~-~~r~~ 43 (467)
+++||.|.| +|++|+..++.|.+....++++ .+|+.
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~ 38 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRA 38 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence 357899998 5999999999999875455554 44443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.46 E-value=0.062 Score=44.11 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|.|+ |-+|...+..+...|...|++.++++.
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~ 64 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD 64 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHH
Confidence 4678999998 568999999999999557888877664
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.35 E-value=0.065 Score=44.21 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=30.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|-|+| .|.+|..+++.|++.| ++|.+.||++.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G-~~V~~~dr~~~ 35 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG-FKVAVFNRTYS 35 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC-CeEEEEECCHH
Confidence 6799996 5999999999999999 59999999875
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.15 Score=42.14 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.++++|+|.|| |..|-.-+..|.++|| +|+++.+.+.
T Consensus 41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~-~Vtl~E~~~~ 77 (179)
T d1ps9a3 41 VQKKNLAVVGA-GPAGLAFAINAAARGH-QVTLFDAHSE 77 (179)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred CCCcEEEEECc-cHHHHHHHHHHHhhcc-ceEEEeccCc
Confidence 45789999988 9999999999999995 9999998765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.08 E-value=0.032 Score=46.18 Aligned_cols=75 Identities=16% Similarity=0.067 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCC---HHHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~~ 83 (467)
.+.+|+|.|+ |-+|...+..+...|...|+++++++.+.. +. ..-+... ..|.++ .+.+.+...
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~--------~a---~~lGa~~-~i~~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVE--------AA---KFYGATD-ILNYKNGHIEDQVMKLTN 93 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHH--------HH---HHHTCSE-EECGGGSCHHHHHHHHTT
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHH--------HH---HhhCccc-cccccchhHHHHHHHHhh
Confidence 4568999976 999999999999999557999998764210 00 0112222 123333 233444443
Q ss_pred --CCCEEEEcccC
Q 012270 84 --GASTVFYVDAT 94 (467)
Q Consensus 84 --~~D~Vih~aa~ 94 (467)
++|+||.+++.
T Consensus 94 g~G~D~vid~~g~ 106 (174)
T d1jqba2 94 GKGVDRVIMAGGG 106 (174)
T ss_dssp TSCEEEEEECSSC
T ss_pred ccCcceEEEccCC
Confidence 48999999874
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.11 Score=41.48 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=28.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDST 42 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~ 42 (467)
|++|.|.|+||-||.....-+.+... ++|.++.-.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~ 36 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG 36 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 67899999999999999998887642 577777543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=90.96 E-value=0.084 Score=44.28 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..++++.|.|. |-||+.+++.|..-| .+|...++....... . ..++ ...++++++++.+
T Consensus 47 L~gktvgIiG~-G~IG~~va~~l~~fg-~~v~~~d~~~~~~~~--~----------~~~~-------~~~~~l~~ll~~s 105 (193)
T d1mx3a1 47 IRGETLGIIGL-GRVGQAVALRAKAFG-FNVLFYDPYLSDGVE--R----------ALGL-------QRVSTLQDLLFHS 105 (193)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTT-CEEEEECTTSCTTHH--H----------HHTC-------EECSSHHHHHHHC
T ss_pred eeCceEEEecc-ccccccceeeeeccc-cceeeccCcccccch--h----------hhcc-------ccccchhhccccC
Confidence 45789999975 999999999999999 599999986541000 0 0011 1123467778889
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+|+.+..
T Consensus 106 D~i~~~~p 113 (193)
T d1mx3a1 106 DCVTLHCG 113 (193)
T ss_dssp SEEEECCC
T ss_pred CEEEEeec
Confidence 98776655
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.85 E-value=0.12 Score=43.32 Aligned_cols=76 Identities=20% Similarity=0.097 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCH---HHHHHHHh
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~ 83 (467)
.+.+|+|.|+ |-+|...+..+...|...|+++++++.+. +....-+...+. |-.+. +++.+...
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-----------~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~ 91 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARL-----------AHAKAQGFEIAD-LSLDTPLHEQIAALLG 91 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH-----------HHHHHTTCEEEE-TTSSSCHHHHHHHHHS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhh-----------HhhhhccccEEE-eCCCcCHHHHHHHHhC
Confidence 4679999986 99998888888777755899998876511 111112344433 33332 33444443
Q ss_pred --CCCEEEEcccCC
Q 012270 84 --GASTVFYVDATD 95 (467)
Q Consensus 84 --~~D~Vih~aa~~ 95 (467)
++|++|.+.+..
T Consensus 92 g~g~D~vid~vG~~ 105 (195)
T d1kola2 92 EPEVDCAVDAVGFE 105 (195)
T ss_dssp SSCEEEEEECCCTT
T ss_pred CCCcEEEEECcccc
Confidence 589999998843
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.62 E-value=0.12 Score=42.52 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|+|+ |-||...+..+...|...|++.++++.
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~ 64 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE 64 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchH
Confidence 4578999975 999999999999999657888888765
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=90.50 E-value=0.15 Score=44.15 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+.+||+|+|| |..|-.++..|.++|+ +|+++.|.+.
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~-~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGV-DVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 4578999998 9999999999999995 9999998654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.48 E-value=0.11 Score=45.67 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=29.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
.|+|+|| |..|..++.+|.++| .+|+++++..
T Consensus 6 DvvIIGa-Gi~Gls~A~~La~~G-~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGG-GIIGSAIAYYLAKEN-KNTALFESGT 37 (276)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 3999988 999999999999999 5999999864
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.45 E-value=0.21 Score=41.10 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=51.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCC--C---CCe-------EEEEec--CC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--S---GRA-------EYHQVD--VR 73 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~---~~v-------~~~~~D--l~ 73 (467)
+-+++|+|| |-.|.+-++.....| ..|+++|.+.......+.. ..+... . ... .....+ ..
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~lG-A~V~v~D~~~~~~~~l~~l---~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~ 103 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRLG-AVVMATDVRAATKEQVESL---GGKFITVDDEAMKTAETAGGYAKEMGEEFRKK 103 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHHT---TCEECCC-----------------------CC
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHh---hcceEEEeccccccccccccchhhcCHHHHHH
Confidence 448999998 999999999999999 5999999877521111000 000000 0 000 000111 12
Q ss_pred CHHHHHHHHhCCCEEEEcccCCCC
Q 012270 74 DISQIKKVLEGASTVFYVDATDLN 97 (467)
Q Consensus 74 d~~~l~~~~~~~D~Vih~aa~~~~ 97 (467)
+.+.+.+.+..+|+||-.+-.+..
T Consensus 104 ~~~~l~~~l~~aDlVI~talipG~ 127 (183)
T d1l7da1 104 QAEAVLKELVKTDIAITTALIPGK 127 (183)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTS
T ss_pred HHHHHHHHHHhhhhheeeeecCCc
Confidence 356677888899999988775543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.40 E-value=0.12 Score=42.28 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|.|+ |.+|...+..+...|...|++.++++.
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~ 68 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE 68 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhH
Confidence 4568999886 999999999998888657788887664
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.11 E-value=0.14 Score=40.75 Aligned_cols=35 Identities=20% Similarity=0.481 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~ 42 (467)
.++++|||+|| |.+|..-++.|++.| -+|+++...
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~G-A~VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTG-CKLTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGT-CEEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 46899999999 999999999999999 599998653
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=89.99 E-value=0.078 Score=44.65 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++|.|.|- |-||+.+++.|..-| .+|.+.++...... . .+....+++.++++.+|
T Consensus 42 ~gk~vgIiG~-G~IG~~va~~l~~fg-~~V~~~d~~~~~~~----~-----------------~~~~~~~~l~~~l~~sD 98 (197)
T d1j4aa1 42 RDQVVGVVGT-GHIGQVFMQIMEGFG-AKVITYDIFRNPEL----E-----------------KKGYYVDSLDDLYKQAD 98 (197)
T ss_dssp GGSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCCHHH----H-----------------HTTCBCSCHHHHHHHCS
T ss_pred cCCeEEEecc-cccchhHHHhHhhhc-ccccccCccccccc----c-----------------cceeeeccccccccccc
Confidence 5689999975 999999999999999 59999987543100 0 00111234677888899
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+|+.+..
T Consensus 99 ii~~~~p 105 (197)
T d1j4aa1 99 VISLHVP 105 (197)
T ss_dssp EEEECSC
T ss_pred cccccCC
Confidence 8776654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.97 E-value=0.17 Score=45.87 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
++|+|+|+|| |+-|-..|..|.++|+ +|.++.++..
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~-~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGH-QVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence 3689999988 9999999999999995 9999998764
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=89.96 E-value=0.13 Score=41.09 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDS 41 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r 41 (467)
+|++|.|.|+||-||....+-+.+... ++|.++.-
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 368999999999999999998877532 57776643
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.79 E-value=0.14 Score=42.70 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=27.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|.|.| .||+|..++..| ++|+ +|+++|.++.
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~-~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQN-EVTIVDILPS 33 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTS-EEEEECSCHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCC-cEEEEECCHH
Confidence 7899996 699999998755 6794 9999998764
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.73 E-value=0.65 Score=38.28 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
...+++.|.| .|.||+.+++.|..-| .+|...++...... .... .. +.++++++.+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~~~~---------------~~~~----~~---~~l~ell~~s 97 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLG-MYVYFYDIENKLPL---------------GNAT----QV---QHLSDLLNMS 97 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCCCCC---------------TTCE----EC---SCHHHHHHHC
T ss_pred ccceEEEEee-cccchhhhhhhccccc-ceEeeccccccchh---------------hhhh----hh---hhHHHHHhhc
Confidence 3568999995 5999999999999999 59999997543110 0111 11 2467788889
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+|+-+..
T Consensus 98 Dii~i~~p 105 (188)
T d1sc6a1 98 DVVSLHVP 105 (188)
T ss_dssp SEEEECCC
T ss_pred cceeeccc
Confidence 99876665
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.55 E-value=0.18 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=29.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~ 44 (467)
|||+|.|| |++|-.++..|.+.+. .+|++++|...
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~~ 36 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGDF 36 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence 78999998 9999999999998753 38999987654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=89.39 E-value=0.11 Score=43.32 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
...+++.|.|. |-||+.+++.|..-| .+|...++...
T Consensus 42 l~~~~vgiiG~-G~IG~~va~~l~~fg-~~v~~~d~~~~ 78 (188)
T d2naca1 42 LEAMHVGTVAA-GRIGLAVLRRLAPFD-VHLHYTDRHRL 78 (188)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHGGGT-CEEEEECSSCC
T ss_pred ccccceeeccc-cccchhhhhhhhccC-ceEEEEeeccc
Confidence 35688999975 999999999999999 59999998653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=89.21 E-value=0.22 Score=44.51 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 5 ~~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+..+++|+|+|| |..|-..+..|.++|+ +|+++.+.+.
T Consensus 27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~-~V~vlE~~~~ 64 (370)
T d2iida1 27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGH-QVTVLEASER 64 (370)
T ss_dssp CSSCCEEEEECC-BHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred CCCCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 346789999988 9999999999999995 9999988654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.94 E-value=0.21 Score=39.89 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=29.6
Q ss_pred CCCEEEEEc-CCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLN-GRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtG-atGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++++|.+ |.||+|..++..|.++|+ +|+++.+.+.
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~~ 75 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVHL 75 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCc
Confidence 345666652 449999999999999995 9999998654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=0.84 Score=42.86 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCC-----------------cCCCCCeEEEEe
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-----------------SLSSGRAEYHQV 70 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~~~~ 70 (467)
..||||.|+ |-+|+++++.|...|--+++++|.+.-...+..++- .... ....-++..+..
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQf-lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 114 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQF-LFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN 114 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCT-TCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccc-cCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence 358999998 669999999999999658999998653221111110 0000 011123455555
Q ss_pred cCCCHHHHHHHHhCCCEEEEcc
Q 012270 71 DVRDISQIKKVLEGASTVFYVD 92 (467)
Q Consensus 71 Dl~d~~~l~~~~~~~D~Vih~a 92 (467)
++.+.. .+.++++|+||.+.
T Consensus 115 ~i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp CGGGBC--HHHHTTCSEEEECC
T ss_pred cccchH--HHHHHhcchheecc
Confidence 555433 45678899999654
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=88.65 E-value=0.19 Score=41.16 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=42.9
Q ss_pred CCEEEEEcCCChhHHH--HHHHHHhc----CCcEEEEEcCCCCccCCCCcCCCCCCCc--CCCCCeEEEEecCCCHHHHH
Q 012270 8 PRTCVVLNGRGFVGRS--LVLRLLEL----GKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIK 79 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~--lv~~Ll~~----g~~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~ 79 (467)
.|||.|.|| |.+|.. ++..|+.. + .+++++|+++.+....... ..+. ......++... +| ..
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~-~eivL~Did~~~~~~~~~~---~~~~~~~~~~~~~i~~~--td---~~ 71 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSG-STVTLMDIDEERLDAILTI---AKKYVEEVGADLKFEKT--MN---LD 71 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTT-CEEEEECSCHHHHHHHHHH---HHHHHHHTTCCCEEEEE--SC---HH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCC-CEEEEEeCCchHHHHHHHH---HHHHHHhcCCCeEEEEe--CC---hh
Confidence 579999997 988865 34445543 3 3899999976421000000 0000 01112222211 22 45
Q ss_pred HHHhCCCEEEEcccC
Q 012270 80 KVLEGASTVFYVDAT 94 (467)
Q Consensus 80 ~~~~~~D~Vih~aa~ 94 (467)
++++++|+|+..++.
T Consensus 72 eaL~dad~Vv~~~~~ 86 (171)
T d1obba1 72 DVIIDADFVINTAMV 86 (171)
T ss_dssp HHHTTCSEEEECCCT
T ss_pred hcccCCCeEeeeccc
Confidence 678999999998874
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.59 E-value=0.18 Score=44.30 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|+|+|+|| |.-|-..+..|.++|+ +|+++.+++.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~-~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGT-DAVLLESSAR 34 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTC-CEEEECSSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence 68999998 9999999999999995 9999988654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=88.38 E-value=0.44 Score=38.79 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.++.+|+|.|+ |-+|...+..+...|..+|++.++++.
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~ 63 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD 63 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHH
Confidence 35678999986 999999999999999658999998775
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=88.12 E-value=0.21 Score=40.55 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
..++|+|.|+ |-.|++++..|.+.|..+|.+++|+..
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ 52 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVK 52 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHH
Confidence 4678999988 999999999999999558999999765
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.90 E-value=0.26 Score=40.78 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 85 (467)
..++++.|.|. |-||+.+++.+..-| .+|.+.++...... . ....++. .+++++++.+
T Consensus 42 l~~k~vgiiG~-G~IG~~va~~~~~fg-~~v~~~d~~~~~~~----~--------~~~~~~~--------~~l~ell~~s 99 (184)
T d1ygya1 42 IFGKTVGVVGL-GRIGQLVAQRIAAFG-AYVVAYDPYVSPAR----A--------AQLGIEL--------LSLDDLLARA 99 (184)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTT-CEEEEECTTSCHHH----H--------HHHTCEE--------CCHHHHHHHC
T ss_pred ccceeeeeccc-cchhHHHHHHhhhcc-ceEEeecCCCChhH----H--------hhcCcee--------ccHHHHHhhC
Confidence 35678888875 999999999999999 59999988654110 0 0011111 2356788889
Q ss_pred CEEEEccc
Q 012270 86 STVFYVDA 93 (467)
Q Consensus 86 D~Vih~aa 93 (467)
|+|+-+..
T Consensus 100 Div~~~~P 107 (184)
T d1ygya1 100 DFISVHLP 107 (184)
T ss_dssp SEEEECCC
T ss_pred CEEEEcCC
Confidence 98776654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.89 E-value=0.2 Score=41.27 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=31.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.++||+||+|-+|...++.+...| .+|+++.+++.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~G-a~Via~~~~~~ 67 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGRES 67 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGG
T ss_pred CcEEEEEccccchHHHHHHHHHcC-CCeEEEecchh
Confidence 489999999999999999999999 58999888765
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=87.68 E-value=0.29 Score=42.90 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.|||+|+|| |.-|-..+.+|.++|+ +|+++.+++.
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~-~V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGL-NVTVFEAEGK 35 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSC-EEEEECSSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence 478999988 9999999999999995 9999987654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.62 E-value=0.23 Score=40.76 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|+|+ |-+|...+..+...|..+|+++|+++.
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHH
Confidence 4568999986 999999999999999558999998775
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=87.41 E-value=0.17 Score=42.23 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.++++.|.|. |-||+.+++.+..-| .+|...++......... .......+++.++++.+|
T Consensus 46 ~g~tvgIiG~-G~IG~~va~~l~~fg-~~v~~~d~~~~~~~~~~------------------~~~~~~~~~l~~ll~~sD 105 (191)
T d1gdha1 46 DNKTLGIYGF-GSIGQALAKRAQGFD-MDIDYFDTHRASSSDEA------------------SYQATFHDSLDSLLSVSQ 105 (191)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTT-CEEEEECSSCCCHHHHH------------------HHTCEECSSHHHHHHHCS
T ss_pred cccceEEeec-ccchHHHHHHHHhhc-cccccccccccccchhh------------------cccccccCCHHHHHhhCC
Confidence 4689999976 999999999999999 59999987553100000 000011134677888899
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+|+-+..
T Consensus 106 ~v~l~~p 112 (191)
T d1gdha1 106 FFSLNAP 112 (191)
T ss_dssp EEEECCC
T ss_pred eEEecCC
Confidence 8875554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.34 E-value=0.39 Score=40.99 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
...++|+|.|| |+.|-..+..|.++| ++|+++.+...
T Consensus 47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G-~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGA-GPSGSEAARVLMESG-YTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred cCCceEEEEcc-cHHHHHHHHHHHHhc-cceeeEeeccc
Confidence 35689999998 999999999999999 59999988664
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.16 E-value=0.38 Score=43.53 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-cEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~-~~V~~~~r~~~ 44 (467)
.+|+|+|+|| |.-|-..+..|+++|. ++|+++.|...
T Consensus 3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4789999988 9999999999998773 48999999865
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=87.07 E-value=0.49 Score=39.53 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEecCCCHHHHHHHHhCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D 86 (467)
.+++|.|.|. |-||+.+++.|..-| .+|.+.|+..... ....... .++.++++.+|
T Consensus 44 ~~ktvgIiG~-G~IG~~va~~l~~fg-~~v~~~d~~~~~~--------------~~~~~~~--------~~l~~l~~~~D 99 (199)
T d1dxya1 44 GQQTVGVMGT-GHIGQVAIKLFKGFG-AKVIAYDPYPMKG--------------DHPDFDY--------VSLEDLFKQSD 99 (199)
T ss_dssp GGSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCCSS--------------CCTTCEE--------CCHHHHHHHCS
T ss_pred cceeeeeeec-ccccccccccccccc-eeeeccCCccchh--------------hhcchhH--------HHHHHHHHhcc
Confidence 4689999976 999999999999999 5999999865410 0112221 23567778899
Q ss_pred EEEEccc
Q 012270 87 TVFYVDA 93 (467)
Q Consensus 87 ~Vih~aa 93 (467)
+|+.+..
T Consensus 100 ~v~~~~p 106 (199)
T d1dxya1 100 VIDLHVP 106 (199)
T ss_dssp EEEECCC
T ss_pred cceeeec
Confidence 8876654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.80 E-value=0.39 Score=41.67 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+++|+|.|| |..|..++..|.+.|...|+++.+.+.
T Consensus 1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 1 PIDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 468999998 999999999999999338999988764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=0.46 Score=38.51 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 6 ~~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.++++|+|.|+ |-.+++++..|.+.|. +|++++|+..
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~-~i~I~nRt~~ 52 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDC-AVTITNRTVS 52 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSHH
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccce-EEEeccchHH
Confidence 35789999988 8889999999999995 8999999775
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=86.57 E-value=0.82 Score=37.04 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=26.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEc
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~ 40 (467)
|++|.|-| .|-||+.+++.|.+++.-+|+.++
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaIn 32 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVS 32 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEe
Confidence 57899996 799999999999988754666554
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.45 E-value=0.27 Score=43.92 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|..|+|+|| |+-|..+++.|.+.| ++|.++.++..
T Consensus 1 M~dv~IIGa-G~sGl~~A~~L~~~g-~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGS-GLFGAVCANELKKLN-KKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECC-SHHHHHHHHHHGGGT-CCEEEECSSSS
T ss_pred CccEEEECC-cHHHHHHHHHHHhCC-CcEEEEECCCC
Confidence 457999988 999999999999999 59999988664
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=86.41 E-value=0.53 Score=35.35 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhc---CCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLEL---GKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~---g~~~V~~~~r~~~ 44 (467)
.+++++|.|| |++|-.++..|.+. | .+|+++.|.+.
T Consensus 17 ~p~~v~IiGg-G~ig~E~A~~l~~~~~~g-~~Vtli~~~~~ 55 (117)
T d1feca2 17 APKRALCVGG-GYISIEFAGIFNAYKARG-GQVDLAYRGDM 55 (117)
T ss_dssp CCSEEEEECS-SHHHHHHHHHHHHHSCTT-CEEEEEESSSS
T ss_pred cCCeEEEECC-ChHHHHHHHHhHhhcccc-cccceeccccc
Confidence 4689999998 99999999876553 6 49999988765
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=86.26 E-value=0.29 Score=43.48 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=29.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
+|+|+|| |.+|..++.+|.++|..+|++++|+.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 6999988 99999999999999933799999875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.95 E-value=0.5 Score=37.89 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|.|+ |-+|...+..+...| .+|+++++++.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G-~~Vi~~~~~~~ 62 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMG-LHVAAIDIDDA 62 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcC-Cccceecchhh
Confidence 5678999886 999999999999999 59999998765
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.73 E-value=0.22 Score=48.57 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=66.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCCccCCCC-------cCCCC---------CCCcCCCCC--eEEEE
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS-------ESNSL---------LPDSLSSGR--AEYHQ 69 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~~~~~~~-------~~~~~---------~~~~~~~~~--v~~~~ 69 (467)
..+|+|.|+ |-+|..+++.|...|--.++++|.+.-...+.. +.-+. +.+. .|. ++.+.
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~l--Np~v~i~~~~ 101 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL--NSDVSGSFVE 101 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTT--CTTSBCCEES
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHh--CCCCcEEEEc
Confidence 358999987 779999999999999668999987552211100 00000 1111 133 33333
Q ss_pred ecCCCH-HHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcCccccc
Q 012270 70 VDVRDI-SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (467)
Q Consensus 70 ~Dl~d~-~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS~~vyg 137 (467)
.+..+. +.-.+.+.++|+||.+.. |......+-++|++.++ .+|+++|.+.||
T Consensus 102 ~~~~~~~~~~~~~~~~~dvVv~~~~--------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~G 155 (529)
T d1yova1 102 ESPENLLDNDPSFFCRFTVVVATQL--------------PESTSLRLADVLWNSQI-PLLICRTYGLVG 155 (529)
T ss_dssp SCHHHHHHSCGGGGGGCSEEEEESC--------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred CCchhhhhhHHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHcCC-CEEEEeccCCEE
Confidence 332211 011234667899995532 23334567788988887 599999888876
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.34 E-value=0.45 Score=38.56 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
..++|+|.|| |++|-.++..|.+.|. +|+++.+.+
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~-~v~v~~~~~ 36 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGW-EGNIRLVGD 36 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECS
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCC-ceEEEEecC
Confidence 4578999988 9999999999999995 655554433
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.34 E-value=0.52 Score=35.46 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC--cEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~--~~V~~~~r~~~ 44 (467)
.+++++|.|| |++|-.++..|.+.|. .+|+++.|.+.
T Consensus 19 ~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 19 PPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred cCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 4579999998 9999999977665542 37999988664
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.75 E-value=1.5 Score=35.83 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=29.5
Q ss_pred CCEEEE-EcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 8 PRTCVV-LNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilV-tGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+.+++| +||+|-+|...++.....| .+|+++.|++.
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~G-a~vI~~v~~~~ 65 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDRP 65 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHT-CEEEEEECCCT
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcC-CeEEEEEeccc
Confidence 456666 6999999999999999999 58888877654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.70 E-value=0.36 Score=42.52 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=30.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+|+|.|| |..|-.++..|.+.|+ +|.++.+.+.
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~-~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGI-DNVILERQTP 36 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred CEEEECc-CHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence 6999998 9999999999999995 9999998753
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.06 E-value=0.45 Score=40.31 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCC
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGK 33 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~ 33 (467)
|||+|+|| |.+|-..+.+|.++|+
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC
Confidence 78999998 9999999999999995
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.84 E-value=0.52 Score=37.72 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|.|+ |-+|...+..+...|. +|.++++++.
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~-~v~~~~~~~~ 62 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDE 62 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCC-eEeccCCCHH
Confidence 4678999875 8999999999998895 8999988765
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=83.40 E-value=0.48 Score=41.41 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=28.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
-|+|.|| |..|..++.+|.++| .+|+++++..
T Consensus 5 DvvIIGa-Gi~Gls~A~~La~~G-~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGA-GSMGMAAGYQLAKQG-VKTLLVDAFD 36 (281)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 4899988 999999999999999 5999999854
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=82.67 E-value=2.2 Score=35.11 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=63.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEec---------------
Q 012270 9 RTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD--------------- 71 (467)
Q Consensus 9 ~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D--------------- 71 (467)
+||.|.|- |--|..++..+.+.|.. +..+++.+... +... +.......+.
T Consensus 1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~----------L~~~--~a~~ki~iG~~~t~G~G~g~~p~~g 67 (194)
T d1w5fa1 1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDLQV----------LEAS--NADVKIQIGENITRGLGAGGRPEIG 67 (194)
T ss_dssp CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCHHH----------HHTC--CCSEEEECCTTTTTTSCCTTCHHHH
T ss_pred CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCHHH----------HhcC--CcceEEecccccCCCcccccCchhh
Confidence 57889987 88999999999998753 44555554321 1000 0111222111
Q ss_pred ----CCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEE
Q 012270 72 ----VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (467)
Q Consensus 72 ----l~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~ 130 (467)
..+.+++.+.++++|.||-+|+.... +-..++.-+.+.|++.++.-+-++
T Consensus 68 ~~aa~e~~~~I~~~l~~~d~vfi~AGlGGg---------TGtgaapviA~~ake~g~lvv~iv 121 (194)
T d1w5fa1 68 EQAALESEEKIREVLQDTHMVFITAGFGGG---------TGTGASPVIAKIAKEMGILTVAIV 121 (194)
T ss_dssp HHHHHHTHHHHHHHTTTCSEEEEEEETTSS---------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhHHHHHHHHHHHHhcCCCeEEEEEecCCC---------cccchHHHHHHHHHHcCCceEEEE
Confidence 12356677888899999999996542 234556678999999987433333
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.52 E-value=0.54 Score=38.04 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
.+.+|+|.|+ |-+|...+..+...|-..|+++++.+.
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~ 64 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD 64 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHH
Confidence 4578999987 557777777777777558999988775
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=0.88 Score=35.19 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=28.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHH----hcCCcEEEEEcCCCC
Q 012270 8 PRTCVVLNGRGFVGRSLVLRLL----ELGKCIVRVTDSTQS 44 (467)
Q Consensus 8 ~~~ilVtGatGfiG~~lv~~Ll----~~g~~~V~~~~r~~~ 44 (467)
.++++|.|| ||+|-.++..|. +.| .+|+++.+.+.
T Consensus 37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g-~~Vt~i~~~~~ 75 (137)
T d1m6ia2 37 VKSITIIGG-GFLGSELACALGRKARALG-TEVIQLFPEKG 75 (137)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHhcC-CEEEEeccccc
Confidence 568999988 999999998885 357 49999988664
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.76 E-value=0.69 Score=36.77 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
||+|.|| |++|-.++..|.+ + .+|+++++.+.
T Consensus 2 rVvIIGg-G~~G~e~A~~l~~-~-~~Vtvv~~~~~ 33 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLSQ-T-YEVTVIDKEPV 33 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHTT-T-SEEEEECSSSS
T ss_pred eEEEECC-cHHHHHHHHHHHc-C-CCEEEEecccc
Confidence 7999988 9999999998864 6 48999987653
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=81.66 E-value=0.77 Score=36.40 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=25.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
||-++|- |.+|+.+++.|++.|+ .| +.+|..+
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~-~~-~~~~~~~ 33 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFP-TL-VWNRTFE 33 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSC-EE-EECSSTH
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCC-EE-EEeCCHH
Confidence 5888876 9999999999999995 55 5666654
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=81.16 E-value=0.97 Score=33.26 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCC
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~ 43 (467)
.+|+|+|.|+ |.-|..++..|.+.+. +|+...|..
T Consensus 31 ~gK~VlVVG~-g~Sa~dia~~l~~~ak-~v~~~~~r~ 65 (107)
T d2gv8a2 31 VGESVLVVGG-ASSANDLVRHLTPVAK-HPIYQSLLG 65 (107)
T ss_dssp TTCCEEEECS-SHHHHHHHHHHTTTSC-SSEEEECTT
T ss_pred CCCeEEEECC-CCCHHHHHHHHHHhcC-EEEEEEecC
Confidence 5789999987 8999999999998874 555555544
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.13 E-value=1.7 Score=38.35 Aligned_cols=34 Identities=18% Similarity=0.034 Sum_probs=26.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
|.+=--.||-.|.+|+++++.+| ++|+++.+..+
T Consensus 38 R~ItN~SSGk~G~alA~~~~~~G-a~V~li~g~~s 71 (290)
T d1p9oa_ 38 RFLDNFSSGRRGATSAEAFLAAG-YGVLFLYRARS 71 (290)
T ss_dssp EEEEECCCCHHHHHHHHHHHHTT-CEEEEEEETTS
T ss_pred eEeCCCCchHHHHHHHHHHHHcC-CEEEEEecCCc
Confidence 33334457999999999999999 59999977654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=80.34 E-value=0.75 Score=38.96 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=29.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCcEEEEEcCCCC
Q 012270 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (467)
Q Consensus 10 ~ilVtGatGfiG~~lv~~Ll~~g~~~V~~~~r~~~ 44 (467)
+|+|+|| |.-|-..+..|.++|..+|+++.+.+.
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~~ 35 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATDH 35 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence 6999988 999999999999999327999988654
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.26 E-value=3.6 Score=34.17 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCc--EEEEEcCCCCccCCCCcCCCCCCCcCCCCCeEEEEe--------------
Q 012270 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV-------------- 70 (467)
Q Consensus 7 ~~~~ilVtGatGfiG~~lv~~Ll~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------- 70 (467)
...+|.|.|- |--|..++..+.+.|.. +..+++.+... +.... .......+
T Consensus 14 ~~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~-L~~~~-----------~~~ki~ig~~~t~g~Gag~~p~ 80 (209)
T d2vapa1 14 TKAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDAQQ-LIRTK-----------ADKKILIGKKLTRGLGAGGNPK 80 (209)
T ss_dssp TCCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBHHH-HHTSC-----------CSEEEECCTTTTTTBCCTTCHH
T ss_pred cCCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCHHH-HhcCC-----------cchhcccccccccccccccchH
Confidence 4568999987 88999999999998753 44555554321 00000 01111111
Q ss_pred -----cCCCHHHHHHHHhCCCEEEEcccCCCCCCChhhHHHhhHHHHHHHHHHHHhCCCCeEEEEcC
Q 012270 71 -----DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (467)
Q Consensus 71 -----Dl~d~~~l~~~~~~~D~Vih~aa~~~~~~~~~~~~~~nv~g~~~ll~aa~~~~v~r~v~~SS 132 (467)
-..+.+++.+.++++|.||-+||.... +-..++.-+.+.|++.++.-+-++..
T Consensus 81 ~g~~aa~e~~~~I~~~l~~~d~vfi~AGlGGG---------TGsgaapvia~~ake~g~lvv~ivtl 138 (209)
T d2vapa1 81 IGEEAAKESAEEIKAAIQDSDMVFITCGLGGG---------TGTGSAPVVAEISKKIGALTVAVVTL 138 (209)
T ss_dssp HHHHHHHHTHHHHHHHHTTCSEEEEEEETTSS---------HHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEeCCCC---------ccccHHHHHHHHHHHcCCcEEEEEec
Confidence 113456788889999999999996552 23445666889999998744444443
|