BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012271
(467 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 302 bits (773), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 184/494 (37%), Positives = 269/494 (54%), Gaps = 67/494 (13%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
+F YIS+ALG R S V SK LGL GVI+V+ +VL ++GF+S +GV S+L+I++V+
Sbjct: 643 VFLYISLALGSYSRCSRVAVESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVV 702
Query: 61 PFLVLAVGVDNMCILV---NAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVG 117
PFLVLAVG DN+ I V + R P E E I L V PS+ L SLSE + F +G
Sbjct: 703 PFLVLAVGADNIFIFVLEYQRLPRMPGE-QREAHIGRTLGSVAPSMLLCSLSEAICFFLG 761
Query: 118 SFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI-------------------------- 151
+ PMPA R F++ + LA++LDF LQ+TAFVAL+
Sbjct: 762 ALTPMPAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDVLCCFSTRKLPPP 821
Query: 152 ------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+++AP L ++ VV+ +FL A++ L I GL+Q++ LP+DS
Sbjct: 822 KEKEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQELALPKDS 881
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
YL YF YL VGPP+YFV +N+SSE+ N CS + C S SL +I AS
Sbjct: 882 YLIDYFLFLNRYLEVGPPVYFVTTSGFNFSSEA-GMNATCSSAGCKSFSLTQKIQYASEF 940
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
P+ SY+A A+SW+DDF+ W +P + CCR ++ G + +E C
Sbjct: 941 PDQSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRGPH------------KDEFCPSTDTS 987
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
+C + L RP+ EQF + LPWFLN P+ C KGG AY TSV+L+ G +
Sbjct: 988 FNCLKNCMNRTLGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGLAAYRTSVNLS--SDGQV 1045
Query: 379 QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK--------INIFPYSVFYIFFEQ 430
AS+F +H PL D+ +LRA+R ++ ++ L+ +FPY++ +F++Q
Sbjct: 1046 IASQFMAYHKPLRNSQDFTEALRASRLLAANITADLRKVPGTDPNFEVFPYTISNVFYQQ 1105
Query: 431 YLDIWRVALINIAV 444
YL + + +A+
Sbjct: 1106 YLTVLPEGIFTLAL 1119
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 178/494 (36%), Positives = 275/494 (55%), Gaps = 65/494 (13%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
MF YIS+ALG S V SK+ LG++G+++V+ SV S+G FS IGV TLI++EVI
Sbjct: 631 MFLYISIALGHIKSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVI 690
Query: 61 PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
PFLVLAVGVDN+ ILV +R L+ ++ L EV PS+ L+S SE +AF +G
Sbjct: 691 PFLVLAVGVDNIFILVQTYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGG 750
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV------------------------- 153
+PA FS+FA +AVL+DF LQ+T FV+L+ +
Sbjct: 751 LSVVPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQGAEDGAGV 810
Query: 154 --------------HAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+AP+L ++ +V++VF+ SIA+ ++E GL+Q + +P DS
Sbjct: 811 QASESCLFRFFKNSYAPLLLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDS 870
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
Y+ YF + + YL GPP+YFVV++ +NY+S + N +C C+++SL+ +I A+ +
Sbjct: 871 YVMDYFQSLSRYLHAGPPVYFVVEEGHNYTS-LKGQNMVCGGLGCNNDSLVQQIFTAAQL 929
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
+ I +SW+DD+ W P++ CCR + N T ++ C + V
Sbjct: 930 DNYTRIGFAPSSWIDDYFDWIKPQS-SCCRVY-NST--------------DQFCNASVVD 973
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
C C + RP E F LP FL+ P+ C KGGH AYS++V++ G SG +
Sbjct: 974 PTCIRCRPLTSEGKQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG-V 1032
Query: 379 QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKIN-----IFPYSVFYIFFEQYLD 433
A+ F T+HT L D++++++ AR +S ++ T+ + +FPYSVFY+F+EQYL
Sbjct: 1033 GATYFMTYHTVLQASADFIDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLT 1092
Query: 434 IWRVALINIAVALG 447
+ + N+ V+LG
Sbjct: 1093 VIDDTIFNLGVSLG 1106
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 273/495 (55%), Gaps = 67/495 (13%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
MF YIS+ALG S V SK+ LG++G+++V+ SV S+G FS +G+ TLI++EVI
Sbjct: 631 MFLYISLALGHIQSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVI 690
Query: 61 PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
PFLVLAVGVDN+ ILV +R E L+ ++ L EV P++ L+S SE AF G+
Sbjct: 691 PFLVLAVGVDNIFILVQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGA 750
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------------ 154
MPA FS+FA +AVL+DF LQ+T FV+L+ +
Sbjct: 751 LSSMPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNHLDILCCVRGADDGQGS 810
Query: 155 ---------------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
AP+L ++ +VV+VF+ S+A+ +++ GL+Q + +P DS
Sbjct: 811 HASESYLFRFFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVAVVNKVDIGLDQSLSMPNDS 870
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
Y+ YF + +YL GPP+YFV+++ YNYSS + N +C CD++SL+ +I A+ +
Sbjct: 871 YVIDYFKSLAQYLHSGPPVYFVLEEGYNYSSR-KGQNMVCGGMGCDNDSLVQQIFNAAEL 929
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKF-VNGTYCPPDDQPPCCSPDEEPCGVNGV 317
+ + +SW+DD+ W SP++ CCR + V +C P
Sbjct: 930 DTYTRVGFAPSSWIDDYFDWVSPQS-SCCRLYNVTHQFCNASVMDP-------------- 974
Query: 318 CKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGI 377
C C + RP ++F + LP FL+ P+ C KGGH AY ++V++ G +
Sbjct: 975 --TCVRCRPLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVG-DDTY 1031
Query: 378 IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK-----INIFPYSVFYIFFEQYL 432
I A+ F T+HT L DY ++++ AR +S +++T++ +FPYSVFY+F+EQYL
Sbjct: 1032 IGATYFMTYHTILKTSADYTDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYL 1091
Query: 433 DIWRVALINIAVALG 447
I + N++V+LG
Sbjct: 1092 TIIDDTIFNLSVSLG 1106
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 172/493 (34%), Positives = 271/493 (54%), Gaps = 62/493 (12%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
MF YIS+ALG V SKV LG++G+++V+ SV S+G FS IG+ TLI++EVI
Sbjct: 631 MFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVI 690
Query: 61 PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
PFLVLAVGVDN+ ILV A +R L+ ++ L EV PS+ L+S SE +AF +G+
Sbjct: 691 PFLVLAVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGA 750
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV------------------------- 153
MPA FS+FA LAV +DF LQ+T FV+L+ +
Sbjct: 751 LSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSV 810
Query: 154 --------------HAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
++P+L ++ +V+++F+ SIA+ +++ GL+Q + +P DS
Sbjct: 811 QASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDS 870
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIP 259
Y+ YF + ++YL GPP+YFV+++ + + S+ N +C C+++SL+ +I A+ +
Sbjct: 871 YMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLD 930
Query: 260 ELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCK 319
+ I +SW+DD+ W P++ CCR V+ ++ C + V
Sbjct: 931 NYTRIGFAPSSWIDDYFDWVKPQS-SCCR--VDNI-------------TDQFCNASVVDP 974
Query: 320 DCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQ 379
C C + RP F LP FL+ P+ C KGGH AYS++V++ +
Sbjct: 975 ACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVG 1034
Query: 380 ASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKIN-----IFPYSVFYIFFEQYLDI 434
A+ F T+HT L D++++L+ AR +S +++T+ IN +FPYSVFY+F+EQYL I
Sbjct: 1035 ATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTI 1094
Query: 435 WRVALINIAVALG 447
+ N+ V+LG
Sbjct: 1095 IDDTIFNLGVSLG 1107
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 192/521 (36%), Positives = 275/521 (52%), Gaps = 91/521 (17%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
+F YIS+ALG +S V SK LGL GV +V+ +V+ ++GFFS +G++S+L+I++V+
Sbjct: 643 IFLYISLALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVV 702
Query: 61 PFLVLAVGVDNMCILV---NAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVG 117
PFLVL+VG DN+ I V + R+P E E I AL V PS+ L SLSE + F +G
Sbjct: 703 PFLVLSVGADNIFIFVLEYQRLPRRPGE-PREVHIGRALGRVAPSMLLCSLSEAICFFLG 761
Query: 118 SFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI-------------------------- 151
+ PMPA R F++ + LAV+LDF LQ++AFVAL+
Sbjct: 762 ALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVKPQELPPP 821
Query: 152 ------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+ +AP L W + VV+ +FLA S+ I GL+Q++ LP+DS
Sbjct: 822 GQGEGLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDS 881
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
YL YF Y VG P+YFV YN+SSE+ N +CS + C++ S +I A+
Sbjct: 882 YLLDYFLFLNRYFEVGAPVYFVTTLGYNFSSEA-GMNAICSSAGCNNFSFTQKIQYATEF 940
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
PE SY+A PA+SW+DDF+ W +P + CCR +++G P+ C P VN +
Sbjct: 941 PEQSYLAIPASSWVDDFIDWLTPSS--CCRLYISG----PNKDKFC------PSTVNSL- 987
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNG------ 372
+C + + RPS EQF + LPWFLN P+ C KGG AYSTSV+L
Sbjct: 988 -NCLKNCMSITMGSVRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVNLTSDGQVLD 1046
Query: 373 ---------YESGIIQA----------SEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT 413
SG I A S F +H PL DY +LRAARE ++ ++
Sbjct: 1047 TVAILSPRLEYSGTISAHCNLYLLDSTSRFMAYHKPLKNSQDYTEALRAARELAANITAD 1106
Query: 414 LK--------INIFPYSVFYIFFEQYLDIWRVALINIAVAL 446
L+ +FPY++ +F+EQYL I L +++ L
Sbjct: 1107 LRKVPGTDPAFEVFPYTITNVFYEQYLTILPEGLFMLSLCL 1147
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 180/494 (36%), Positives = 265/494 (53%), Gaps = 67/494 (13%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
+F YIS+ALG R+S V SK LGL GV +V+ +V+ ++GF+S +GV S+L+I++V+
Sbjct: 643 VFLYISLALGSYSRWSRVAVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQVV 702
Query: 61 PFLVLAVGVDNMCILV---NAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVG 117
PFLVLAVG DN+ I V + R P E E I L V PS+ L SLSE + F +G
Sbjct: 703 PFLVLAVGADNIFIFVLEYQRLPRMPGE-QREAHIGRTLGSVAPSMLLCSLSEAICFFLG 761
Query: 118 SFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI-------------------------- 151
+ MPA R F++ + LA++ DF LQ+TAFVAL+
Sbjct: 762 ALTSMPAVRTFALTSGLAIIFDFLLQMTAFVALLSLDSKRQEASRPDVVCCFSSRNLPPP 821
Query: 152 ------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+++ P L ++ VV+ +FL A++ L I GL+Q + LP+DS
Sbjct: 822 KQKEGLLLCFFRKIYTPFLLHRFIRPVVLLLFLVLFGANLYLMCNISVGLDQDLALPKDS 881
Query: 200 YLQGYFDNTTEYLRVGPPLYF-VVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
YL YF YL VGPP+YF YN+S+E+ N +CS + C+S SL +I AS
Sbjct: 882 YLIDYFLFLNRYLEVGPPVYFDTTSGYNFSTEA-GMNAICSSAGCESFSLTQKIQYASEF 940
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
P SY+A A+SW+DDF+ W +P + CCR + G + +E C
Sbjct: 941 PNQSYVAIAASSWVDDFIDWLTPSS-SCCRIYTRGPH------------KDEFCPSTDTS 987
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
+C + L RP+TEQF + LPWFLN P+ C KGG AY TSV+L+ G I
Sbjct: 988 FNCLKNCMNRTLGPVRPTTEQFHKYLPWFLNDTPNIRCPKGGLAAYRTSVNLS--SDGQI 1045
Query: 379 QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK--------INIFPYSVFYIFFEQ 430
AS+F +H PL D+ +LRA+R ++ ++ L+ +FPY++ +F++Q
Sbjct: 1046 IASQFMAYHKPLRNSQDFTEALRASRLLAANITAELRKVPGTDPNFEVFPYTISNVFYQQ 1105
Query: 431 YLDIWRVALINIAV 444
YL + + +A+
Sbjct: 1106 YLTVLPEGIFTLAL 1119
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 223/440 (50%), Gaps = 52/440 (11%)
Query: 34 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR---QPMELVLET 90
V+ S++ + GF + G+KSTLII EVIPFL+LA+G+DN+ ++ + R Q E ++
Sbjct: 595 VLASIVCAAGFLTLFGLKSTLIIAEVIPFLILAIGIDNIFLITHEYDRNCEQKPEYSIDQ 654
Query: 91 RISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVAL 150
+I +A+ + PSI ++ L + F + +F+ MPA F++++ ++V+ + LQ+TA+V++
Sbjct: 655 KIISAIGRMSPSILMSLLCQTGCFLIAAFVTMPAVHNFAIYSTVSVIFNGVLQLTAYVSI 714
Query: 151 I----------------EVHAPILGLWGVKM-----VVVSVFLAFTVASIALSTRIEAGL 189
+ E L + KM +++ +F A+ S+ I+ GL
Sbjct: 715 LSLYEKRSNYKQITGNEETKESFLKTFYFKMLTQKRLIIIIFSAWFFTSLVFLPEIQFGL 774
Query: 190 EQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLL 249
+Q + +P+DSYL YF + +L VGPP+Y VVK+ + + + C+ +SL
Sbjct: 775 DQTLAVPQDSYLVDYFKDVYSFLNVGPPVYMVVKNLDLTKRQNQQKICGKFTTCERDSLA 834
Query: 250 NEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDE 309
N + + S I +P A+WLDD+ ++ +P+ CCR GT +
Sbjct: 835 NVLEQER---HRSTITEPLANWLDDYFMFLNPQNDQCCR-LKKGT--------------D 876
Query: 310 EPCGVNGVCKDCTTCFRHSDLVNNR---PSTEQFREKLPWFLNALPSADCAKGGHGAYST 366
E C + + C TCF+ N P + F E L ++NA PS C GG YST
Sbjct: 877 EVCPPSFPSRRCETCFQQGSWNYNMSGFPEGKDFMEYLSIWINA-PSDPCPLGGRAPYST 935
Query: 367 SVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYI 426
++ Y + AS FRT H PL Q D++ + SS + +++F YS FYI
Sbjct: 936 AL---VYNETSVSASVFRTAHHPLRSQKDFIQAYSDGVRISSSFPE---LDMFAYSPFYI 989
Query: 427 FFEQYLDIWRVALINIAVAL 446
FF QY + + L I A+
Sbjct: 990 FFVQYQTLGPLTLKLIGSAI 1009
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1
PE=1 SV=2
Length = 1383
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/501 (24%), Positives = 219/501 (43%), Gaps = 79/501 (15%)
Query: 1 MFAYISVALGD----TPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLII 56
+ Y++ +LG + S V S++ LG+ VI+ +LS S G FS G+
Sbjct: 638 LIGYVTFSLGRYFVCENQLWSILVHSRICLGMLSVIINLLSSFCSWGIFSMFGIHPVKNA 697
Query: 57 MEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETR------ISNALVEVGPSITLASLSE 110
+ V F+V +GV ++V +Q + + + + + P++ +SL
Sbjct: 698 LVVQFFVVTLLGVCRTFMVVKYYAQQRVSMPYMSPDQCPEIVGMVMAGTMPAMFSSSLGC 757
Query: 111 FLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------EVH---------- 154
+F +G F +PA R F ++A LAVL+D L T F+AL E++
Sbjct: 758 AFSFFIGGFTDLPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDTQRELNGKPEFFFPYQ 817
Query: 155 ----------------------------APILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
AP L +++ +F+A + ++ LS++I
Sbjct: 818 IKDLLGAYLIGRQRATDTFMTQFFHFQVAPFLMHRMTRIITGIIFIASFITTVILSSKIS 877
Query: 187 AGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSN 246
G +Q + SY+ +F ++ VGPP++F V N+ C+ C
Sbjct: 878 VGFDQSMAFTEKSYISTHFRYLDKFFDVGPPVFFTVDGELDWHRPDVQNKFCTFPGCSDT 937
Query: 247 SLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCS 306
S N ++ A E +Y++ +W+D++L W S ++ CC+ +V+ D CS
Sbjct: 938 SFGNIMNYAVGHTEQTYLSGEMYNWIDNYLEWISRKS-PCCKVYVH-------DPNTFCS 989
Query: 307 PDEEPCGVNGVCKDCTTC---------FRHSDLVNNRPSTEQFREKLPWFLNALPSADCA 357
+ ++ K C TC + S ++ +RPS E F L FL P+++C
Sbjct: 990 TNRNKSALDD--KACRTCMDFDYVANSYPKSSIMYHRPSIEVFYRHLRHFLEDTPNSECV 1047
Query: 358 KGGHGAYSTSVDLNGYESGIIQASEFRTFHTPL--NKQGDYVNSLRAAREFSSRMSDTLK 415
GG ++ ++ G IQAS+F TFH L + D++ ++ AR S R+ ++
Sbjct: 1048 FGGRASFKDAISFT--SRGRIQASQFMTFHKKLSISNSSDFIKAMDTARMVSRRLERSID 1105
Query: 416 --INIFPYSVFYIFFEQYLDI 434
++F YS + F+EQY I
Sbjct: 1106 DTAHVFAYSKIFPFYEQYSTI 1126
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2
PE=3 SV=2
Length = 1274
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/484 (23%), Positives = 193/484 (39%), Gaps = 94/484 (19%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V K+L+ +S V++ ++SV S+G FS GV +T + V+ F++ +G++ + +++
Sbjct: 620 VHHKLLISISAVMISVISVWCSIGMFSLFGVHATDNAIVVLFFVITCLGINRIFVIIRTF 679
Query: 80 KRQPMELVL--------ETRISNALVEVGPSITLASL-SEFLAFAVGSFIP-----MPAC 125
+ L RISN + P + SL F G +P MPA
Sbjct: 680 QANGHCYGLPNISYREMNHRISNVMRRSIPIVLTNSLICSTCLFLAGGVLPYVSVSMPAV 739
Query: 126 RVFSMFAALAVLLDFFLQVTAFVALIEVHA------------------------------ 155
VF+ A LA+L+D + + L + A
Sbjct: 740 EVFARHAGLAILMDTAFYLLVMLPLFQYDARREMSGKCEIWPWYELSNESKINLCMEAVD 799
Query: 156 ---------------PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSY 200
P+L ++ + + F + + + +E G Q + SY
Sbjct: 800 GNLRSPVDWFKLAIAPLLLKKICRIWIATFFFVSLIIACYCTLCLEFGFNQVMAFSETSY 859
Query: 201 LQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPE 260
L +F N E L +GPPL+FVV+ + + N+ C+++ CD NS+ N+I +
Sbjct: 860 LTKHFQNMNENLNIGPPLWFVVEGDVKWHDPKMQNKFCTLAGCDDNSMGNKIRSLAYAEN 919
Query: 261 L--SYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
+Y+ WLD +L + P G C K +C P +
Sbjct: 920 YKGNYLHGDVNIWLDSYLQFMHPR--GSCCKMDGKQFCDPSNAT---------------- 961
Query: 319 KDCTTCFRHSDLVNNRPSTE-QFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGI 377
S V + +TE +F L FL PS CA GG +++L +G
Sbjct: 962 ---HCSSCSSSSVASLTTTEYEFYRNLHHFLETPPSIQCAHGGMALAKPAINLT--RNGK 1016
Query: 378 IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK-------INIFPYSVFYIFFEQ 430
IQ++ F TF LN L A F+ ++D ++ + ++ YS F+ ++EQ
Sbjct: 1017 IQSAYFSTFFKKLNLSDSI--QLYDAWRFAKYLADDIERELEIPGVKVYVYSTFFPYYEQ 1074
Query: 431 YLDI 434
YL +
Sbjct: 1075 YLTL 1078
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80
S+ +GL+GV+LV LSV +G S IG+ +V+PFL L VGVD++ +L +A
Sbjct: 464 KSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 523
Query: 81 R--QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
Q + E R L G S+ L S+S AF + + IP+PA R FS+ AA+ V+
Sbjct: 524 ETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVF 583
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
+F + + F A++ + L+ + + +F FT ++ ++E
Sbjct: 584 NFAMVLLIFPAILS-----MDLYRREDRRLDIFCCFTSPCVSRVIQVE 626
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80
S+ +GL+GV+LV LSV +G S IG+ +V+PFL L VGVD++ +L +A
Sbjct: 450 KSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 509
Query: 81 R--QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
Q + E R L G S+ L S+S AF + + IP+PA R FS+ AA+ V+
Sbjct: 510 ETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVF 569
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
+F + + F A++ + L+ + + +F FT ++ ++E
Sbjct: 570 NFAMVLLIFPAILS-----MDLYRREDRRLDIFCCFTSPCVSRVIQVE 612
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 7/168 (4%)
Query: 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80
S+ +GL+GV+LV LSV +G S IG+ +V+PFL L VGVD++ +L +A
Sbjct: 464 KSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 523
Query: 81 R--QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
Q + E R L G S+ L S+S AF + + IP+PA R FS+ AA+ V+
Sbjct: 524 ETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVF 583
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
+F + + F A++ + L+ + + +F FT + +IE
Sbjct: 584 NFAMVLLIFPAILS-----MDLYRREDRRLDIFCCFTSPCVTRVIQIE 626
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 77/134 (57%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
S+ +GL+GV+LV L+V +G + +G+ +V+PFL L +GVD++ +L +A
Sbjct: 419 AQSQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDIFLLAHAF 478
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
+ P + L R+ L G S+ L S++ +AF + + +P+PA R FS+ AA+ V +
Sbjct: 479 TKAPPDTPLPERMGECLRSTGTSVALTSVNNMVAFFMAALVPIPALRAFSLQAAIVVGCN 538
Query: 140 FFLQVTAFVALIEV 153
F + F A++ +
Sbjct: 539 FAAVMLVFPAILSL 552
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 77/134 (57%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI + +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMPFFTTVLSI 442
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 73/134 (54%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
S+ +GL+GV+LV L+V +G + +G+ +V+PFL L +GVD++ +L +A
Sbjct: 419 AQSQGSVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDVFLLAHAF 478
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
L+ R+ L G S+ L S++ AF + + +P+PA R FS+ AA+ V
Sbjct: 479 TEALPGTPLQERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALRAFSLQAAIVVGCT 538
Query: 140 FFLQVTAFVALIEV 153
F + F A++ +
Sbjct: 539 FVAVMLVFPAILSL 552
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIVLIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMFFFTTVLSI 442
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 75/134 (55%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 307 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 366
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L I +E +G F +PA + F +FA + ++ D
Sbjct: 367 VSTPVDLEVKLRIAQGLRNESWFIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 426
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 427 FFLQMFFFTTVLSI 440
>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1
SV=1
Length = 906
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 126/286 (44%), Gaps = 56/286 (19%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ +K+ + + GV V +SV+ G +GV +I+ PFL+L VGVD+M I+++A
Sbjct: 364 IRNKMCVAVFGVFSVAMSVVSGFGLMLHLGVPFVIIVANS-PFLILGVGVDDMFIMISAW 422
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
++ + + R+SN+ +V SIT+ +++ LAF G + + F ++ +L
Sbjct: 423 QKTSLSESIRERLSNSYSKVAVSITITTITNVLAFYTGITSSFRSVQYFCIYTGTTLLFC 482
Query: 140 FFLQVTAFVA------------------------------------LIEVH--------- 154
+F +T F A LI+ H
Sbjct: 483 YFYSITCFGAVMALDGKREVAWSRWLEKPDQKYSSLKKSCCVPFGSLIDKHGEDNHPMNL 542
Query: 155 ------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNT 208
P L K +VV +++ + ++SI +++ GL+ + + DSY+ YF+
Sbjct: 543 FFRDYFGPFLTTSKAKFIVVLLYIFYIISSIYGCFQVQEGLDLRNLASDDSYITPYFNVE 602
Query: 209 TEYLR-VGPPLYFVVKD-YNY-SSESRHTNQLCSISQCDSNSLLNE 251
+Y GP + +V + NY ++ R C ++Q + N +++
Sbjct: 603 EDYFSDYGPRVMVIVTESVNYWDNDVRQKLDKC-MTQFEENEYVDK 647
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 76/133 (57%)
Query: 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80
S+ +GL+GV+LV LSV +G S +G+ +V+P L L +GVD+M +L ++
Sbjct: 447 KSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAATTQVLPSLALGIGVDDMFLLGHSFT 506
Query: 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDF 140
+ + R + L G S+ L S++ +AF + + +P+PA R FS+ AA+ V+ +F
Sbjct: 507 ETRSNIPFKERTGDCLRRTGTSVALTSVNNMIAFFMAALVPIPALRAFSLQAAVVVVFNF 566
Query: 141 FLQVTAFVALIEV 153
+ + F A++ +
Sbjct: 567 AMALLIFPAILSL 579
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 71/134 (52%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
S + L L+GV++V + + +G + G++ +++PFL L +GVDNM +L++
Sbjct: 683 TESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNY 742
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
+ ++ + E G SI S++ L+F G+ +P+PA R F +++ + +
Sbjct: 743 RDVVKLAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFN 802
Query: 140 FFLQVTAFVALIEV 153
F +T + A+I +
Sbjct: 803 FIAILTIYPAIISI 816
>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis elegans GN=ptr-9 PE=3
SV=2
Length = 844
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%)
Query: 59 VIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
++PFLV+++G DNM +++ + + E R +AL E S+ L SL++ L+FA+GS
Sbjct: 327 IMPFLVVSIGTDNMFLMLKSWRMTKKSSNEEQRYIHALTESAASLFLTSLTDGLSFAIGS 386
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153
A RVF + A+A+L F QVT F A++ +
Sbjct: 387 ISDFHAVRVFCTYCAMAILFMFLFQVTFFNAVMSL 421
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V + +G++GV+L+ S +G + +G+ +V+PFL L +GVD++ +L A
Sbjct: 454 VRGQSSVGVAGVLLMCFSTAAGLGLSALLGIVFNAASTQVVPFLALGLGVDHIFMLTAAY 513
Query: 80 ----KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALA 135
+R+ +L+L+ +VGPSI ++ S +F +FIP+PA +VF + AA+
Sbjct: 514 AESNRREQTKLILK--------KVGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIV 565
Query: 136 VLLDFFLQVTAFVALIEV 153
+ + + F A+I +
Sbjct: 566 MCSNLAAALLVFPAMISL 583
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 137 LLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLP 196
L F L AF + + P L VK + V FLA ++S+ STR++ GL+ ++P
Sbjct: 657 LASFSLATFAF----QHYTPFLMRSWVKFLTVMGFLAALISSLYASTRLQDGLDIIDLVP 712
Query: 197 RDSYLQGYFDNTTE 210
+DS + D T
Sbjct: 713 KDSNEHKFLDAQTR 726
>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1
SV=3
Length = 767
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 57/275 (20%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ +K+ + GVI L+V+ G IGV +I+ PFL+L VGVD+M I+++A
Sbjct: 408 IRNKMCVAAFGVISAFLAVVSGFGLLLHIGVPFVIIVANS-PFLILGVGVDDMFIMISAW 466
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
+ + + R+SN + SIT+ +++ LA G + + F ++ + +L
Sbjct: 467 HKTNLADDIRERMSNVYSKAAVSITITTITNILALYTGIMSSFRSVQCFCIYTGMTLLFC 526
Query: 140 FFLQVTAFVALI-----------------------------------------EVH---- 154
+F +T F A + ++H
Sbjct: 527 YFYNITCFGAFMALDGKREVVCLCWLKKADPKWPSFKKFCCFPFGSVPDEHGTDIHPISL 586
Query: 155 ------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNT 208
P L K VV +++ + ++SI ++ GL+ + + DSY+ YF+
Sbjct: 587 FFRDYFGPFLTRSESKYFVVFIYVLYIISSIYGCFHVQEGLDLRNLASDDSYITPYFNVE 646
Query: 209 TEYLR-VGPPLYFVVK---DYNYSSESRHTNQLCS 239
Y GP + +V DY + + R + C+
Sbjct: 647 ENYFSDYGPRVMVIVTKKVDY-WDKDVRQKLENCT 680
>sp|Q6ZW05|PTHD4_HUMAN Patched domain-containing protein 4 OS=Homo sapiens GN=PTCHD4 PE=2
SV=3
Length = 846
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ SK LGL GV+ V +S++ + G F K ++ IPF + G + L++
Sbjct: 258 LRSKPFLGLLGVLTVCISIITAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGW 316
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS--FIPMPACRVFSMFAALAVL 137
+R L + RI++A +V + T+ S F+ F +G+ F + A +VF +++L
Sbjct: 317 RRTKENLPFKDRIADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKVFCQNMCVSIL 376
Query: 138 LDFF 141
L++F
Sbjct: 377 LNYF 380
>sp|B9EKX1|PTHD4_MOUSE Patched domain-containing protein 4 OS=Mus musculus GN=Ptchd4 PE=2
SV=2
Length = 904
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ SK LGL GV+ V +S+ + G F K ++ IPF + G + L++
Sbjct: 316 LRSKPFLGLLGVLTVCISIATAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGW 374
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS--FIPMPACRVFSMFAALAVL 137
+R L + R+++A +V + T+ S F+ F +G+ F + A ++F +++L
Sbjct: 375 RRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSIL 434
Query: 138 LDFF 141
L++F
Sbjct: 435 LNYF 438
>sp|A3KFU9|PTHD2_MOUSE Patched domain-containing protein 2 OS=Mus musculus GN=Ptchd2 PE=2
SV=1
Length = 1347
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNA 78
S V L G+ + LS L ++ + + G++ I+ V F+++ +GVD++ + +N
Sbjct: 436 TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT 495
Query: 79 VKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
++ + R+ + + G + SL+ A+A F +PA F +F +L V
Sbjct: 496 YRQATHLEDPQLRMIHTIQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV-- 553
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRD 198
++A++ LGLW S+++A +S S + G + + P D
Sbjct: 554 -----TCCWLAVLFTMPAALGLW-------SLYMAPLESSCQNSCHQKCGRKSSLHFPGD 601
>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2
SV=2
Length = 1392
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNA 78
S V L G+ + LS L ++ + + G++ I+ V F+++ +GVD++ + +N
Sbjct: 481 TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT 540
Query: 79 VKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
++ + R+ + + G + SL+ A+A F +PA F +F +L V
Sbjct: 541 YRQATHLEDPQLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV-- 598
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKM 165
++A++ LGLW + +
Sbjct: 599 -----SCCWLAVLVTMPAALGLWSLYL 620
>sp|P16393|HMDH_STRPU 3-hydroxy-3-methylglutaryl-coenzyme A reductase
OS=Strongylocentrotus purpuratus GN=HMGCR PE=2 SV=2
Length = 932
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR 81
SK +LG++G+ + S L S G++ T + E +PF +L + + L
Sbjct: 89 SKYILGIAGLFTIFSSFLFSSAVIHLFGLELT-GLNEALPFFLLLIDLTKASALTKFALS 147
Query: 82 QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFF 141
+ + I+ + +GP+ITL ++ L ++G+ + VF F L+++ ++F
Sbjct: 148 STTQNEVVDNIARGMAILGPTITLDTVVTTLVISIGTMSSIRKMEVFCCFGILSLIANYF 207
Query: 142 LQVTAFVALIEV 153
+ +T F A + +
Sbjct: 208 VFMTFFPACLSL 219
>sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Drosophila
melanogaster GN=Hmgcr PE=2 SV=2
Length = 920
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 14 RFSSFY-VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 72
+F S + + SK +LG++G+ V S + + +G + + + + FL+L + + N
Sbjct: 124 QFCSLHRLGSKYVLGIAGLFTVFSSFIFTTAIIKFLGSDISEL-KDALFFLLLVIDLSNS 182
Query: 73 CILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFA 132
L + + I+ L +GP+I+L ++ E L VG+ + V MFA
Sbjct: 183 GRLAQLALSGSNQAEVTQNIARGLELLGPAISLDTIVEVLLVGVGTLSGVQRLEVLCMFA 242
Query: 133 ALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVV 168
L+VL+++ + +T + A + + L GV M VV
Sbjct: 243 VLSVLVNYVVFMTFYPACLSLIFD-LSRSGVDMSVV 277
>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3
SV=1
Length = 897
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 3 AYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVG--FFSAIGVKSTLIIMEVI 60
A IS ++ D R K LGL GV+ + ++ + + G F S STL+ I
Sbjct: 289 ATISSSMRDCLR-------GKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLL---GI 338
Query: 61 PFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS-- 118
PF + G + L+ +R L + R+++A +V T+ S + F +G+
Sbjct: 339 PFFAMGHGTKGVFELLAGWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGMGASP 398
Query: 119 FIPMPACRVFSMFAALAVLLDFF 141
F + + +VF +AVL+++F
Sbjct: 399 FTNIESVKVFCQSMCVAVLVNYF 421
>sp|A7Z064|HMDH_BOVIN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Bos taurus
GN=HMGCR PE=2 SV=2
Length = 888
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L V + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLVDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens
GN=HMGCR PE=1 SV=1
Length = 888
Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASTL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|Q29512|HMDH_RABIT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Oryctolagus
cuniculus GN=HMGCR PE=3 SV=1
Length = 888
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|Q5R6N3|HMDH_PONAB 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pongo abelii
GN=HMGCR PE=2 SV=1
Length = 888
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASTL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P09610|HMDH_MESAU 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mesocricetus
auratus GN=HMGCR PE=1 SV=1
Length = 887
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P00347|HMDH_CRIGR 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus
griseus GN=HMGCR PE=1 SV=1
Length = 887
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|Q01237|HMDH_MOUSE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mus musculus
GN=Hmgcr PE=2 SV=3
Length = 887
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P51639|HMDH_RAT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Rattus
norvegicus GN=Hmgcr PE=1 SV=2
Length = 887
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P20715|HMDH_XENLA 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Xenopus laevis
GN=hmgcr PE=2 SV=1
Length = 883
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSKASAL 140
Query: 76 VNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALA 135
+ + I+ + +GP+ TL +L E L VG+ + + F ++
Sbjct: 141 AKFALSSNSQDEVRDNIARGMAILGPTFTLEALVECLVIGVGTMSGVRQLEIMCCFGCMS 200
Query: 136 VLLDFFLQVTAFVALI 151
VL ++F +T F A +
Sbjct: 201 VLANYFAFMTFFPACV 216
>sp|Q1W675|HMDH_PIG 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Sus scrofa
GN=HMGCR PE=2 SV=1
Length = 885
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL +F+ +T F A +
Sbjct: 200 SVLATYFVFMTFFPACV 216
>sp|O76819|HMDH_AGRIP 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Agrotis ipsilon
GN=HMGR PE=2 SV=1
Length = 833
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 91 RISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVAL 150
R+ AL +GP+ TL +L L VG+ +P FA LA+L+D+ + VT + A
Sbjct: 155 RVGRALALLGPTATLDTLLAVLLVGVGALSGVPRLEHMCTFACLALLVDYLVFVTFYPAC 214
Query: 151 IEVHA 155
+ + A
Sbjct: 215 LSLVA 219
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 OS=Mus musculus GN=Notch3
PE=1 SV=1
Length = 2318
Score = 36.6 bits (83), Expect = 0.39, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 285 GCCRKFVNGTYC--PPDDQPPCCSPDEEPCG----VNGVCKDCTTCFR 326
G C NG +C PP PP C P PC +GVC D FR
Sbjct: 671 GSCVDGENGFHCLCPPGSLPPLCLPANHPCAHKPCSHGVCHDAPGGFR 718
>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
Length = 5255
Score = 36.2 bits (82), Expect = 0.49, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 15/58 (25%)
Query: 280 SPEAFGCCRKFVNGTYCPP-----DDQPPCCSPDEEPCGVNG--------VCKDCTTC 324
S E G C +G CPP D++ C P+E PC NG + +DC TC
Sbjct: 927 SAEPNGTCTGIADGCVCPPGTVFLDER--CVPPEECPCQHNGRLYHPNDTIVRDCNTC 982
>sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3
PE=1 SV=2
Length = 2321
Score = 35.4 bits (80), Expect = 1.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 285 GCCRKFVNG--TYCPPDDQPPCCSPDEEPCG----VNGVCKDCTTCFR 326
G C NG CPP PP C P PC +G+C D FR
Sbjct: 670 GSCVDGENGFRCLCPPGSLPPLCLPPSHPCAHEPCSHGICYDAPGGFR 717
>sp|Q6QA27|TRI44_RAT Tripartite motif-containing protein 44 OS=Rattus norvegicus
GN=Trim44 PE=2 SV=1
Length = 344
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 293 GTYC---PPDDQPPCCSPDEEPCGVNGVCKDCTTCF--RHSDLVNNR 334
G C PPD C PDE P G VC+DC C+ RH+D +
Sbjct: 6 GAACEELPPDGTCDECEPDEAP-GAEEVCRDCGFCYCRRHADAHRQK 51
>sp|Q9QXA7|TRI44_MOUSE Tripartite motif-containing protein 44 OS=Mus musculus GN=Trim44
PE=2 SV=2
Length = 346
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 293 GTYC---PPDDQPPCCSPDEEPCGVNGVCKDCTTCF--RHSDLVNNR 334
G C PPD C PDE P G VC+DC C+ RH+D +
Sbjct: 6 GAACEELPPDGTCDECEPDEAP-GAEEVCRDCGFCYCRRHADAHRQK 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,213,397
Number of Sequences: 539616
Number of extensions: 6765397
Number of successful extensions: 21120
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 20964
Number of HSP's gapped (non-prelim): 143
length of query: 467
length of database: 191,569,459
effective HSP length: 121
effective length of query: 346
effective length of database: 126,275,923
effective search space: 43691469358
effective search space used: 43691469358
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)