Query 012271
Match_columns 467
No_of_seqs 223 out of 1265
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 00:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 2.9E-83 6.3E-88 732.5 35.6 439 1-465 582-1081(1204)
2 TIGR00918 2A060602 The Eukaryo 100.0 2.4E-71 5.3E-76 623.4 31.9 438 1-465 409-997 (1145)
3 KOG1933 Cholesterol transport 100.0 2.6E-73 5.7E-78 629.2 13.1 435 1-453 559-1036(1201)
4 PF02460 Patched: Patched fami 100.0 6.5E-66 1.4E-70 577.4 30.4 395 1-465 226-677 (798)
5 KOG1934 Predicted membrane pro 100.0 3.4E-63 7.5E-68 544.6 33.7 380 15-466 274-710 (868)
6 KOG1935 Membrane protein Patch 100.0 5.8E-57 1.3E-61 471.9 21.3 429 1-464 422-949 (1143)
7 TIGR00920 2A060605 3-hydroxy-3 100.0 1.2E-29 2.7E-34 273.0 12.4 144 1-151 72-216 (886)
8 PF12349 Sterol-sensing: Stero 100.0 1.3E-28 2.8E-33 222.3 13.7 135 19-153 1-135 (153)
9 COG1033 Predicted exporters of 99.9 5.4E-25 1.2E-29 238.6 31.4 209 22-231 218-450 (727)
10 TIGR00921 2A067 The (Largely A 99.9 3.1E-24 6.6E-29 238.9 32.0 207 23-230 216-450 (719)
11 TIGR00833 actII Transport prot 99.9 2.9E-21 6.3E-26 219.3 33.5 205 25-231 198-431 (910)
12 TIGR03480 HpnN hopanoid biosyn 99.7 2.8E-16 6.2E-21 178.2 18.9 188 26-216 295-500 (862)
13 COG1033 Predicted exporters of 99.6 4.2E-15 9.2E-20 161.9 13.6 131 22-153 590-720 (727)
14 PF03176 MMPL: MMPL family; I 99.6 4.9E-15 1.1E-19 150.4 12.7 134 23-156 166-304 (333)
15 TIGR00921 2A067 The (Largely A 99.5 5.1E-14 1.1E-18 157.1 13.6 128 23-151 590-717 (719)
16 TIGR03480 HpnN hopanoid biosyn 99.3 4.1E-12 9E-17 144.4 12.3 122 23-151 735-856 (862)
17 COG2409 Predicted drug exporte 99.3 3.7E-11 8.1E-16 137.0 16.7 208 21-230 205-441 (937)
18 TIGR00916 2A0604s01 protein-ex 99.2 3E-11 6.4E-16 113.3 9.1 117 26-143 72-191 (192)
19 TIGR00833 actII Transport prot 99.2 1.1E-10 2.3E-15 133.4 12.7 131 23-154 767-903 (910)
20 PRK10614 multidrug efflux syst 99.1 4.8E-10 1E-14 129.5 13.5 182 27-209 359-580 (1025)
21 TIGR00918 2A060602 The Eukaryo 99.1 8.5E-10 1.9E-14 126.3 14.9 131 23-156 988-1119(1145)
22 PRK13022 secF preprotein trans 99.1 4E-10 8.6E-15 112.2 9.8 128 24-152 150-280 (289)
23 PRK13024 bifunctional preprote 99.0 1.3E-09 2.8E-14 121.5 13.0 126 26-152 290-416 (755)
24 PRK09579 multidrug efflux prot 99.0 5.2E-09 1.1E-13 120.8 15.0 125 27-152 358-486 (1017)
25 PRK13023 bifunctional preprote 98.9 8.5E-09 1.8E-13 113.8 12.2 126 26-152 302-428 (758)
26 PRK10503 multidrug efflux syst 98.9 2.2E-08 4.8E-13 115.9 15.2 185 27-212 368-596 (1040)
27 PRK05812 secD preprotein trans 98.9 8.5E-09 1.8E-13 109.4 10.1 127 26-153 357-484 (498)
28 TIGR00915 2A0602 The (Largely 98.9 2.5E-08 5.4E-13 115.6 14.8 185 27-212 365-598 (1044)
29 TIGR01129 secD protein-export 98.9 6.5E-09 1.4E-13 107.8 9.0 124 26-150 272-396 (397)
30 PRK10555 aminoglycoside/multid 98.8 3.5E-08 7.5E-13 114.4 15.0 125 27-152 365-494 (1037)
31 PRK14726 bifunctional preprote 98.8 2.8E-08 6.1E-13 111.0 13.5 126 26-152 396-522 (855)
32 PF02460 Patched: Patched fami 98.8 2.6E-08 5.5E-13 112.8 13.1 123 27-151 672-794 (798)
33 PRK09577 multidrug efflux prot 98.8 4.4E-08 9.5E-13 113.5 14.6 125 27-152 364-493 (1032)
34 TIGR00966 3a0501s07 protein-ex 98.8 2.5E-08 5.5E-13 97.2 9.2 121 24-145 121-244 (246)
35 PRK15127 multidrug efflux syst 98.8 5.7E-08 1.2E-12 112.6 13.3 124 27-151 365-493 (1049)
36 PF00873 ACR_tran: AcrB/AcrD/A 98.8 6.2E-08 1.3E-12 112.5 13.5 187 27-214 358-589 (1021)
37 PF02355 SecD_SecF: Protein ex 98.7 3.3E-07 7.1E-12 85.7 12.7 129 23-152 53-184 (189)
38 PRK08578 preprotein translocas 98.6 1.7E-07 3.8E-12 93.4 11.2 122 24-152 158-283 (292)
39 TIGR00914 2A0601 heavy metal e 98.6 2E-07 4.3E-12 108.4 12.4 183 27-212 368-597 (1051)
40 PRK12911 bifunctional preprote 98.6 2.2E-07 4.7E-12 105.5 11.8 125 27-152 934-1059(1403)
41 PRK13024 bifunctional preprote 98.6 1.5E-07 3.2E-12 105.2 9.6 128 23-151 599-729 (755)
42 COG0841 AcrB Cation/multidrug 98.5 3E-07 6.6E-12 105.2 10.4 173 29-204 358-570 (1009)
43 PRK12933 secD preprotein trans 98.5 7E-07 1.5E-11 95.8 10.1 127 26-153 464-592 (604)
44 PRK13021 secF preprotein trans 98.4 7.1E-07 1.5E-11 88.9 8.7 127 24-151 149-278 (297)
45 PRK14726 bifunctional preprote 98.4 1.1E-06 2.3E-11 98.6 9.4 129 23-152 694-825 (855)
46 KOG3664 Predicted patched tran 98.3 2.2E-07 4.7E-12 103.0 2.4 134 18-151 342-496 (999)
47 TIGR00917 2A060601 Niemann-Pic 98.3 7.8E-06 1.7E-10 95.7 14.3 126 25-152 1074-1201(1204)
48 TIGR00914 2A0601 heavy metal e 98.2 2.4E-06 5.1E-11 99.6 8.9 125 27-152 905-1033(1051)
49 COG4258 Predicted exporter [Ge 98.1 5.5E-05 1.2E-09 79.8 13.8 179 28-212 284-477 (788)
50 COG0341 SecF Preprotein transl 98.0 3E-05 6.4E-10 77.4 10.8 133 20-153 153-288 (305)
51 COG4258 Predicted exporter [Ge 98.0 1.6E-05 3.5E-10 83.6 8.7 109 28-148 673-781 (788)
52 KOG1934 Predicted membrane pro 98.0 2.1E-05 4.5E-10 88.5 9.8 115 41-156 718-832 (868)
53 PRK08343 secD preprotein trans 98.0 4E-05 8.6E-10 80.0 10.5 115 35-151 296-410 (417)
54 PRK15127 multidrug efflux syst 98.0 1.5E-05 3.2E-10 92.8 7.8 126 27-153 898-1028(1049)
55 TIGR00915 2A0602 The (Largely 97.9 5.5E-05 1.2E-09 88.1 10.3 125 28-153 898-1026(1044)
56 PRK13023 bifunctional preprote 97.8 8.6E-05 1.9E-09 82.6 9.4 128 23-151 600-730 (758)
57 PRK10503 multidrug efflux syst 97.7 7.7E-05 1.7E-09 86.8 8.7 125 28-153 892-1021(1040)
58 PRK10555 aminoglycoside/multid 97.6 0.00022 4.7E-09 83.1 10.4 125 28-153 897-1025(1037)
59 PRK12911 bifunctional preprote 97.6 0.00021 4.6E-09 81.9 9.4 128 23-151 1256-1391(1403)
60 COG0342 SecD Preprotein transl 97.6 0.00035 7.6E-09 74.6 10.3 129 25-154 366-495 (506)
61 PRK09579 multidrug efflux prot 97.6 0.00014 3E-09 84.6 7.7 122 30-152 874-1000(1017)
62 PRK09577 multidrug efflux prot 97.5 0.00028 6.1E-09 82.2 9.0 127 27-154 892-1022(1032)
63 PF00873 ACR_tran: AcrB/AcrD/A 97.4 0.00088 1.9E-08 78.2 11.6 125 23-151 888-1017(1021)
64 PRK10614 multidrug efflux syst 97.2 0.0011 2.4E-08 77.2 9.4 124 30-154 880-1008(1025)
65 COG3696 Putative silver efflux 97.1 0.0025 5.5E-08 70.8 10.5 160 27-187 361-549 (1027)
66 COG2409 Predicted drug exporte 96.7 0.0093 2E-07 68.9 11.4 128 23-151 780-912 (937)
67 KOG1935 Membrane protein Patch 96.5 0.02 4.3E-07 63.1 10.8 130 24-156 942-1072(1143)
68 COG0841 AcrB Cation/multidrug 92.4 0.098 2.1E-06 60.8 3.3 120 31-151 880-1003(1009)
69 PF03176 MMPL: MMPL family; I 87.8 2.6 5.7E-05 42.6 8.9 73 381-453 88-160 (333)
70 COG3696 Putative silver efflux 79.3 3.4 7.4E-05 46.9 5.7 123 29-154 890-1018(1027)
71 KOG1933 Cholesterol transport 58.7 0.97 2.1E-05 52.9 -4.1 99 35-135 1055-1154(1201)
72 PF09946 DUF2178: Predicted me 50.0 1.3E+02 0.0028 25.5 8.5 19 120-138 88-106 (111)
73 TIGR02230 ATPase_gene1 F0F1-AT 43.9 30 0.00065 28.9 3.5 52 26-77 42-97 (100)
74 KOG3659 Sodium-neurotransmitte 39.7 43 0.00093 36.7 4.8 42 6-50 343-384 (629)
75 PF06363 Picorna_P3A: Picornav 32.1 18 0.00038 29.5 0.4 36 7-42 53-88 (100)
76 PF10942 DUF2619: Protein of u 28.6 1.1E+02 0.0024 23.7 4.1 44 89-135 24-67 (69)
77 COG3301 NrfD Formate-dependent 25.7 5.3E+02 0.012 25.8 9.3 106 19-129 124-237 (305)
78 PF14402 7TM_transglut: 7 tran 22.7 1.6E+02 0.0035 29.6 5.2 67 28-106 194-261 (313)
79 PF04156 IncA: IncA protein; 20.4 76 0.0016 29.2 2.4 31 38-68 19-49 (191)
80 COG1230 CzcD Co/Zn/Cd efflux s 20.2 1.3E+02 0.0028 30.3 4.0 37 431-467 159-199 (296)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=2.9e-83 Score=732.45 Aligned_cols=439 Identities=56% Similarity=0.953 Sum_probs=399.8
Q ss_pred CeeehhhhhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHh
Q 012271 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (467)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~ 80 (467)
||+|++++||+++++++++++||+++|++|++++++|+++++|+++++|+++++++++++|||++||||||+|+++++|+
T Consensus 582 m~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~ 661 (1204)
T TIGR00917 582 MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQ 661 (1204)
T ss_pred HHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78999999999877777899999999999999999999999999999999999878999999999999999999999998
Q ss_pred hccC--C---------CCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 81 RQPM--E---------LVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA 149 (467)
Q Consensus 81 ~~~~--~---------~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a 149 (467)
+..+ + .++++|++++++++||||++|++|+++||++|+++++|++|.||+++|+||+++|++|+|+|||
T Consensus 662 r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~a 741 (1204)
T TIGR00917 662 RLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVA 741 (1204)
T ss_pred HhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7532 1 2789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--------------------------------------------HhhcccccccccchhhHHHHHHHHHHHHHhhccc
Q 012271 150 LI--------------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI 185 (467)
Q Consensus 150 ~L--------------------------------------------~~~~~~l~~~~~k~~v~~~f~~~~~~si~g~~~i 185 (467)
+| ++|+|+|+++++|++|+++|++++++|+||+.++
T Consensus 742 lL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i 821 (1204)
T TIGR00917 742 LLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821 (1204)
T ss_pred HHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhc
Confidence 99 1478999999999999999999999999999999
Q ss_pred ccCccccccCCCCChhhhHHHHHhhhcCCCCcEEEEEe-cCCCCCchhhhhhhhccccCCchhHHHHHHHhccCCCCccc
Q 012271 186 EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYI 264 (467)
Q Consensus 186 ~~g~d~~~~lp~dS~~~~~~~~~~~~f~~~~pv~ivv~-~~dy~~~~~~~~~~c~~~~c~~~sl~~~~~~~~~~~~~s~i 264 (467)
+.|+|+++++|+|||+.+|++.+++||+.|+|||+|++ ++||++++ +|+++|+..+|+.+|+.++ +++.+|+
T Consensus 822 ~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~------~~~~~~i 894 (1204)
T TIGR00917 822 DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNV------FNNLTYI 894 (1204)
T ss_pred CCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHh------hcccchh
Confidence 99999999999999999999999999999999999999 79999984 6999999999999999884 4556788
Q ss_pred cCCCCchHHHHHhhcCCCCCCccccc-CCCCcCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCChhhHhhc
Q 012271 265 AKPAASWLDDFLVWTSPEAFGCCRKF-VNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREK 343 (467)
Q Consensus 265 ~~~~~~Wl~~f~~~l~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~tc~~~~~~~~~~~~~~~F~~~ 343 (467)
.+|+.+|||||++|+++. .+||+.+ .++++|++++ +.|.+|.+-.....++|++++|+++
T Consensus 895 ~~~~~sWlddf~~wl~~~-~~cc~~~~~~~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~ 955 (1204)
T TIGR00917 895 AKPASSWLDDYFDWASPQ-SSCCCRKFTNGTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEY 955 (1204)
T ss_pred cCCchHHHHHHHHHhCcc-ccceeecCCCCCcCCCcc------------------ccccccccccccccCCCCHHHHHHH
Confidence 899999999999999986 4688753 4677887433 3566665422223568999999999
Q ss_pred hhHhhccCCCCcccCCCCCCCccceeecCCCCceEEEeEEEEecccCCChhHHHHHHHHHHHHHHhhhccCCcceeeccC
Q 012271 344 LPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSV 423 (467)
Q Consensus 344 L~~FL~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~asrf~~~~~~l~~~~d~i~al~~~R~ia~~~~~~~~~~vfpys~ 423 (467)
|++||+++|+.+|++||+++|+.+++++.++++.|.||||++||+++++++|++++|+++|+||+++++..++++||||+
T Consensus 956 l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~ 1035 (1204)
T TIGR00917 956 LPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSV 1035 (1204)
T ss_pred HHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcC
Confidence 99999999999999999999999999876556779999999999999999999999999999999998666899999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhHhc---c-cchHHHHhhhh
Q 012271 424 FYIFFEQYLDIWRVALINIAVALGQYSKHH---K-DNSIISKLVLF 465 (467)
Q Consensus 424 ~fvF~EQY~~I~~~~~~~l~ial~~vfvi~---~-~~~~~~~~~~~ 465 (467)
+|+|||||++|++++++++++++++||+|+ + .|++.+++|.+
T Consensus 1036 ~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l~l~~~~aliv~l 1081 (1204)
T TIGR00917 1036 FYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVI 1081 (1204)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 999999999999999999999999999997 4 79999998875
No 2
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=2.4e-71 Score=623.41 Aligned_cols=438 Identities=25% Similarity=0.387 Sum_probs=357.8
Q ss_pred CeeehhhhhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHh
Q 012271 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (467)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~ 80 (467)
||+|++++++++ ++++||++||++|++++++|+++++|+++++|+++|+++++++|||+|||||||+|+|+|+|+
T Consensus 409 m~~Ya~~~l~~~-----d~v~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~ 483 (1145)
T TIGR00918 409 MLAYACLTMLRW-----DCAKSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 483 (1145)
T ss_pred HHHHHHHHhccc-----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHh
Confidence 789999999986 589999999999999999999999999999999999967899999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 012271 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-------- 152 (467)
Q Consensus 81 ~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~-------- 152 (467)
+++++.++++|++++++++|+||++||+|+++||++|+++++|++|.||++++++++++|++|+|+|||+|.
T Consensus 484 ~t~~~~~v~~r~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~ 563 (1145)
T TIGR00918 484 ETGQNIPFEERTGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRRED 563 (1145)
T ss_pred hcCccCCHHHHHHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 998889999999999999999999999999999999999999999999999999999999999999999990
Q ss_pred --------------------------------------------------------------------------------
Q 012271 153 -------------------------------------------------------------------------------- 152 (467)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (467)
T Consensus 564 ~R~D~~cC~~~p~~~~~~~~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1145)
T TIGR00918 564 RRLDIFCCFFSPCSARVIQIEPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDI 643 (1145)
T ss_pred CCcceeeeecccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ----------------------------------hhcccccccccchhhHHHHHHHHHHHHHhhcccccCccccccCCCC
Q 012271 153 ----------------------------------VHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRD 198 (467)
Q Consensus 153 ----------------------------------~~~~~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~~lp~d 198 (467)
+|+|+|+++++|++|+++|++++++|+||+++++.|+|+++++|+|
T Consensus 644 ~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~D 723 (1145)
T TIGR00918 644 AGSTRDLLSQFEDSKAACLSLPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRD 723 (1145)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCC
Confidence 0345677888999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHhhhcCCCCcEEEEEe-cCCCCCchhhhhhhhccccCCchhHHHHHHHhccCCCCccccCC-----CCchH
Q 012271 199 SYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKP-----AASWL 272 (467)
Q Consensus 199 S~~~~~~~~~~~~f~~~~pv~ivv~-~~dy~~~~~~~~~~c~~~~c~~~sl~~~~~~~~~~~~~s~i~~~-----~~~Wl 272 (467)
||+.+|++.+++||+. +|+|+|++ ++||++. |++++ ++ .+++++.+|+.++ +.+||
T Consensus 724 Syl~~yf~~~~~yF~~-~~vy~V~~~~~dy~~~---q~~l~------------~l--~~~f~~~~~i~~~~~~~~~~~WL 785 (1145)
T TIGR00918 724 TNEHDFLDAQFRYFSF-YNMYAVTQGNFDYPTQ---QQLLY------------DL--HQSFSSVKYVLKEDNGQLPRMWL 785 (1145)
T ss_pred CcHHHHHHHHHHhcCc-CceEEEeCCCCCchHH---HHHHH------------HH--HHHhccCceeecCCCCCccchHH
Confidence 9999999999999998 68999999 5999654 33321 22 2456777888766 47999
Q ss_pred HHHHhhcCC-CC--CCccccc--CCCCcCCCCCCCCCCCC---CCCCCCCCCCccCCCcccccCCCCCCCCChhhHhhch
Q 012271 273 DDFLVWTSP-EA--FGCCRKF--VNGTYCPPDDQPPCCSP---DEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKL 344 (467)
Q Consensus 273 ~~f~~~l~~-~~--~~c~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~c~tc~~~~~~~~~~~~~~~F~~~L 344 (467)
|||++|+++ +. .+||+.. .++++|++++...++.+ -.| -.++|.++.|.+-.| ....+++|++++||+||
T Consensus 786 ddf~~wL~~lq~~~d~~~~~g~~~~~~~~n~s~~~~~~~~l~~qtg-~~~~p~~~~~~~~~r-~v~~~g~~~~~~F~~yL 863 (1145)
T TIGR00918 786 HYFRDWLQGLQKAFDEDWRDGRITKENYRNGSDDAVLAYKLLVQTG-HRDKPVDKEQLTTQR-LVNADGIINPNAFYIYL 863 (1145)
T ss_pred HHHHHHHHHhhhhhhhhhhhcccccccccCCccccchhhhhccccc-ccCCccccccccccc-cccccCCCCHHHHHHHH
Confidence 999999997 21 3577641 34567876653221110 000 112444444432111 11245789999999999
Q ss_pred hHhhccCCCC----------cccCCCCCC--CccceeecCCCCceEEEeEEEEecccCCChhHHHHHHHHHHHHHHhhhc
Q 012271 345 PWFLNALPSA----------DCAKGGHGA--YSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSD 412 (467)
Q Consensus 345 ~~FL~~~p~~----------~c~~gg~~~--y~~~v~~~~~~~~~I~asrf~~~~~~l~~~~d~i~al~~~R~ia~~~~~ 412 (467)
+.|+++.|.. .|....|.+ |..+ +...+.++++.++|||+||+++++++|++++++++|+|+++++.
T Consensus 864 ~~wl~~~~~~y~~sq~~~~p~~~~~~~~~~~~~~~-~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~~ 942 (1145)
T TIGR00918 864 SAWVSNDPVAYAASQANIYPHPPEWLHDKNDYDPE-NLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYEG 942 (1145)
T ss_pred HHHHcCCcchhhcccccccCCcchhcccccccccc-cccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999864431 011111111 1000 01112344566679999999999999999999999999999973
Q ss_pred cCCcceeeccCcchhhhhHHHHHHHHHHHHHHHHHHHhHhc---ccchHHHHhhhh
Q 012271 413 TLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGQYSKHH---KDNSIISKLVLF 465 (467)
Q Consensus 413 ~~~~~vfpys~~fvF~EQY~~I~~~~~~~l~ial~~vfvi~---~~~~~~~~~~~~ 465 (467)
.++++||||.+|+|||||..+++.+++++++++++||+++ +.||+.++++.+
T Consensus 943 -~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l 997 (1145)
T TIGR00918 943 -FGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVL 997 (1145)
T ss_pred -cCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 6899999999999999999999999999999999999997 889999998765
No 3
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-73 Score=629.25 Aligned_cols=435 Identities=52% Similarity=0.891 Sum_probs=408.5
Q ss_pred CeeehhhhhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHh
Q 012271 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (467)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~ 80 (467)
||+|++++||+++++++..++||..+|+.|++++.+++..++|+.+++|++.+.++.+++||+++++|+|++|+++++|+
T Consensus 559 mf~yi~~~Lg~~~~~r~vlidSkv~lgi~Gv~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~q 638 (1201)
T KOG1933|consen 559 MFLYINLALGHYRSCRRVLIDSKVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQ 638 (1201)
T ss_pred HHHHHHHHhccCcccceeeeeceeeccccceEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCC--CCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 012271 81 RQPME--LVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------- 151 (467)
Q Consensus 81 ~~~~~--~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L------- 151 (467)
|..+. .+.++||+.++.++||+|+.+++.+..+|++|++++||+++.|++++++++++++++|+|.|.+++
T Consensus 639 r~~~~~~~~~~~~I~~~l~~~~Psil~~slse~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~ 718 (1201)
T KOG1933|consen 639 RDGRSKSEPLEQRIGSVLGEVGPSILLSSLSENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRR 718 (1201)
T ss_pred ccccccCCCcccccchhhhccCcHHHHhHHHhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhh
Confidence 87544 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------HhhcccccccccchhhHHHHHHHHHHHHHhhcccccCccccccCCCCCh
Q 012271 152 -------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSY 200 (467)
Q Consensus 152 -------------------------------~~~~~~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~~lp~dS~ 200 (467)
..|+|+++++.+|++++++|.+++.+++++..+++.|+||+..+|+|||
T Consensus 719 ~~~r~d~~~~~~~~~~~~~~~~~~~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Sy 798 (1201)
T KOG1933|consen 719 LDNRIDIFCCVKPSEEESVRGNEGLLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSY 798 (1201)
T ss_pred hcCCcceEecccccccccccccchhHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccch
Confidence 1478999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcCCCCcEEEEEec-CCCCCchhhhhhhhccccCCchhHHHHHHHhccCCCCccccCCCCchHHHHHhhc
Q 012271 201 LQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWT 279 (467)
Q Consensus 201 ~~~~~~~~~~~f~~~~pv~ivv~~-~dy~~~~~~~~~~c~~~~c~~~sl~~~~~~~~~~~~~s~i~~~~~~Wl~~f~~~l 279 (467)
+.++++.++++++.|||+|+|+++ +||+++. .||++|++.+|+++|+.+++..+++.+|.+|+++|..+|+|||++|+
T Consensus 799 l~dyF~~~~e~l~~GPPvyfv~k~~~~~s~~~-~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~ 877 (1201)
T KOG1933|consen 799 LSDYFKNLNEFLNVGPPVYFVLKGGLDLSSPK-DQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWL 877 (1201)
T ss_pred hhhHhhhhhhhcccCCCEEEEecCCCCCCChh-cccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheee
Confidence 999999999999999999999995 8999985 68999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc-ccCCCCcCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCChhhHhhchhHhhccCCCCcccC
Q 012271 280 SPEAFGCCR-KFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAK 358 (467)
Q Consensus 280 ~~~~~~c~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~tc~~~~~~~~~~~~~~~F~~~L~~FL~~~p~~~c~~ 358 (467)
.+.++ ||| +..++.+||++.++ ..|.+|..+.+....+|+.++|+++|++|+++.|+.+|++
T Consensus 878 ~~~~~-cCr~~~~~g~fc~~~~~~----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~ 940 (1201)
T KOG1933|consen 878 SPQSS-CCRLKPDPGQFCPPSLND----------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAK 940 (1201)
T ss_pred cccCC-ccccCCCCCCcCCCCccc----------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCC
Confidence 99754 999 55678899987543 3466676566656668999999999999999999999999
Q ss_pred CCCCCCccceeecCCCCceEEEeEEEEecccCCChhHHHHHHHHHHHHHHhhhccC-CcceeeccCcchhhhhHHHHHHH
Q 012271 359 GGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTL-KINIFPYSVFYIFFEQYLDIWRV 437 (467)
Q Consensus 359 gg~~~y~~~v~~~~~~~~~I~asrf~~~~~~l~~~~d~i~al~~~R~ia~~~~~~~-~~~vfpys~~fvF~EQY~~I~~~ 437 (467)
||++.|+.++++.....+.|+|++||+||++++++.|+++++|++|+++.++++.+ +.++||||++|+|||||++|+++
T Consensus 941 gg~a~y~~av~l~~~~~~~iqas~F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~ 1020 (1201)
T KOG1933|consen 941 GGHAAYSSAVSLTFTHEGGIQASYFMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTD 1020 (1201)
T ss_pred CCceeeecceEEEecCcccchhhhhhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhh
Confidence 99999999999987666679999999999999999999999999999999998644 47899999999999999999999
Q ss_pred HHHHHHHHHHHHhHhc
Q 012271 438 ALINIAVALGQYSKHH 453 (467)
Q Consensus 438 ~~~~l~ial~~vfvi~ 453 (467)
++.+++++++++|+++
T Consensus 1021 ~~~~l~i~i~~iF~v~ 1036 (1201)
T KOG1933|consen 1021 TLTNLGIDIVAIFLVT 1036 (1201)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 9999999999999985
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=6.5e-66 Score=577.41 Aligned_cols=395 Identities=36% Similarity=0.588 Sum_probs=344.5
Q ss_pred CeeehhhhhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHh
Q 012271 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (467)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~ 80 (467)
|++|+.+++++.+..+.+|++||+|+|++|++++++|+++++|++.++|+++++ ++.++|||++||||||+|+++++|+
T Consensus 226 ~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgIGvDd~Fi~~~~~~ 304 (798)
T PF02460_consen 226 MFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGIGVDDMFIMIHAWR 304 (798)
T ss_pred HHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHHHHhceEEeHHHHh
Confidence 567888888877656678999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 012271 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI--------- 151 (467)
Q Consensus 81 ~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L--------- 151 (467)
++++..+.+||++++++++||||++||+|++++|++|+++|+|++|.||+|+|++++++|++|+|+|+|+|
T Consensus 305 ~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~a~l~l~~~re~~ 384 (798)
T PF02460_consen 305 RTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFPAILVLDGRREAA 384 (798)
T ss_pred hhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------HhhcccccccccchhhHHHHHHHHHHHHHhhcccccCcc
Q 012271 152 -----------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (467)
Q Consensus 152 -----------------------------------------~~~~~~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d 190 (467)
++|+|++.++++|++|++++++++++|+||+++++.|+|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld 464 (798)
T PF02460_consen 385 GRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLD 464 (798)
T ss_pred cccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 136788999999999999999999999999999999999
Q ss_pred ccccCCCCChhhhHHHHHhhhc-CCCCcEEEEEe-cCCCCCchhhhhhhhccccCCchhHHHHHHHhccCCCCccccCCC
Q 012271 191 QQIVLPRDSYLQGYFDNTTEYL-RVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPA 268 (467)
Q Consensus 191 ~~~~lp~dS~~~~~~~~~~~~f-~~~~pv~ivv~-~~dy~~~~~~~~~~c~~~~c~~~sl~~~~~~~~~~~~~s~i~~~~ 268 (467)
+++++|+|||++++++.+++|| +.|+|++++++ ++||++++ +|+++. ++.++ +++.+ +....+++
T Consensus 465 ~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~-~~~~l~--------~lv~~---fe~~~-~~~~~~~t 531 (798)
T PF02460_consen 465 PEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPE-NQDRLN--------SLVQE---FENSP-YSIGNNST 531 (798)
T ss_pred hhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchH-HHHHHH--------HHHHH---Hhccc-cccccccc
Confidence 9999999999999999998877 67999999998 58999974 465542 23333 33333 23344567
Q ss_pred CchHHHHHhhcCCCCCCcccccCCCCcCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCChhhHhhchhHhh
Q 012271 269 ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFL 348 (467)
Q Consensus 269 ~~Wl~~f~~~l~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~tc~~~~~~~~~~~~~~~F~~~L~~FL 348 (467)
.+||++|.+|+++.. .+.+ ++ .+++.|++.+++||
T Consensus 532 ~~WL~~y~~~l~~~~---------~~~~----------------------------------~~--~~~~~~~~~l~~FL 566 (798)
T PF02460_consen 532 SFWLRDYLNFLNSIN---------SSFQ----------------------------------DD--NDKEFFYNLLPEFL 566 (798)
T ss_pred hhhHHHHHHHHhhcc---------cccc----------------------------------cc--ccceeeeccchhhh
Confidence 899999999996521 1000 00 00134788899999
Q ss_pred ccCCCCcccCCCCCCCccceeec--CCCCceEEEeEEEEecccCCChhHHHHHHHHHHHHHHhhhccCCcceeeccCcch
Q 012271 349 NALPSADCAKGGHGAYSTSVDLN--GYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYI 426 (467)
Q Consensus 349 ~~~p~~~c~~gg~~~y~~~v~~~--~~~~~~I~asrf~~~~~~l~~~~d~i~al~~~R~ia~~~~~~~~~~vfpys~~fv 426 (467)
..++ ..+|+.|+.++ .++++.|.++||+++++++.+++|.+++|+++|++++++++ .++++|++.|+
T Consensus 567 ~~~~--------~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~---~~~~~~~~~~~ 635 (798)
T PF02460_consen 567 NSPE--------YRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSD---FNVFVFSPFFI 635 (798)
T ss_pred cccc--------ccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhccee---cceEeeccchh
Confidence 7643 44578888876 34667899999999999999999999999999999998864 56799999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHhc---ccchHHHHhhhh
Q 012271 427 FFEQYLDIWRVALINIAVALGQYSKHH---KDNSIISKLVLF 465 (467)
Q Consensus 427 F~EQY~~I~~~~~~~l~ial~~vfvi~---~~~~~~~~~~~~ 465 (467)
|||||..|++++++++++|+++||+++ ++||++++++.+
T Consensus 636 ~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~ 677 (798)
T PF02460_consen 636 FYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTL 677 (798)
T ss_pred hHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 999999999999999999999999997 999999999876
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=3.4e-63 Score=544.59 Aligned_cols=380 Identities=27% Similarity=0.440 Sum_probs=335.2
Q ss_pred cceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHH
Q 012271 15 FSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISN 94 (467)
Q Consensus 15 ~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~ 94 (467)
.+.+|++||+|||++|++++++|+++|+|++.|+|.++++ ++.++|||++||||||+|+|.++|+|++++.+.+|||++
T Consensus 274 ~~~~~v~SKp~lai~g~l~p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~ 352 (868)
T KOG1934|consen 274 FMIDWVRSKPILAILGVLSPVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAE 352 (868)
T ss_pred cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHH
Confidence 3457999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 012271 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI----------------------- 151 (467)
Q Consensus 95 ~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L----------------------- 151 (467)
+|+|+||||++||+|++++|++|++||+|++|.||++++++++++|+||+|||.|+|
T Consensus 353 ~laeag~SItITSlTn~lsFgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~ 432 (868)
T KOG1934|consen 353 TLAEAGPSITITSLTNVLSFGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLE 432 (868)
T ss_pred HHHHhcCeeeHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------HhhcccccccccchhhHHHHHHHHHHHHHhhcccccCccccccCCCCChhhhHH
Q 012271 152 --------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYF 205 (467)
Q Consensus 152 --------------------------~~~~~~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~ 205 (467)
+.|+||+.++++|..+++++++|+++++||+.+++.|+|+.+++|+|||+.+++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~ 512 (868)
T KOG1934|consen 433 KTEEQKSSSSSSSSSLHNPILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSL 512 (868)
T ss_pred ccccccccCcccccccccchHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHH
Confidence 136889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc-CCCCcEEEEEe-cCCCCCchhhhhhhhccccCCchhHHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCC
Q 012271 206 DNTTEYL-RVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEA 283 (467)
Q Consensus 206 ~~~~~~f-~~~~pv~ivv~-~~dy~~~~~~~~~~c~~~~c~~~sl~~~~~~~~~~~~~s~i~~~~~~Wl~~f~~~l~~~~ 283 (467)
+.++++| +.|.++.++++ ++|++|+++ +++ +.+.+++++..+ .+.+...+.+||++|.+|.+..
T Consensus 513 ~~~~~~~~~~~~~v~v~V~np~dl~~~~~-~~~-----------~~~~~~~fE~~~-~~~G~~sT~~wlr~y~~~~~~~- 578 (868)
T KOG1934|consen 513 RLQEKYFWEYGQQVAVFVNNPPDLSNPEN-RDN-----------LNELVSEFESTP-YSMGRESTKFWLREYLNFLFEK- 578 (868)
T ss_pred HHHHHHhhccCceEEEEEcCCccCCCHHH-HHH-----------HHHHHHHHhcCC-cccCcccchhHHHHHHHHHhhh-
Confidence 9999988 55889999998 599999854 332 445555555554 3456666789999999996431
Q ss_pred CCcccccCCCCcCCCCCCCCCCCCCCCCCCCCCCccCCCcccccCCCCCCCCChhhHhhchh-HhhccCCCCcccCCCCC
Q 012271 284 FGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLP-WFLNALPSADCAKGGHG 362 (467)
Q Consensus 284 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~tc~~~~~~~~~~~~~~~F~~~L~-~FL~~~p~~~c~~gg~~ 362 (467)
+... ..++++|+..+. +|+..++ ..
T Consensus 579 --------~~~~--------------------------------------~~~~~~~~~~~~~~fl~~~~--------~~ 604 (868)
T KOG1934|consen 579 --------NAEL--------------------------------------EDNDDEFYDHLYESFLKSPE--------FS 604 (868)
T ss_pred --------cccc--------------------------------------cCCCcchhhhhHHHHhcccc--------cc
Confidence 1100 012456777774 6665433 56
Q ss_pred CCccceeecC--CCCceEEEeEEEEecccCCChhHHHHHHHHHHHHHHhhhccCCcceeeccCcchhhhhHHHHHHHHHH
Q 012271 363 AYSTSVDLNG--YESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALI 440 (467)
Q Consensus 363 ~y~~~v~~~~--~~~~~I~asrf~~~~~~l~~~~d~i~al~~~R~ia~~~~~~~~~~vfpys~~fvF~EQY~~I~~~~~~ 440 (467)
.|..|+.+++ ++...|.++||.+..+++.+++|..++++++|+||+++++ .++.+|++.++|.|||+++.+++++
T Consensus 605 ~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~~---fnvtvf~~~~~f~Dq~~~v~~~ti~ 681 (868)
T KOG1934|consen 605 FWRNDIVFDNKSDEETIIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYSD---FNVTVFDPSFVFLDQYLSVVPVTIQ 681 (868)
T ss_pred cCccceEeccCCCCCceEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhccC---CCeEEecCchHHHHHHHHhccHHHH
Confidence 7888999973 4667899999999999999999999999999999999863 5678889999999999999999999
Q ss_pred HHHHHHHHHhHhc---ccchHHHHhhhhc
Q 012271 441 NIAVALGQYSKHH---KDNSIISKLVLFY 466 (467)
Q Consensus 441 ~l~ial~~vfvi~---~~~~~~~~~~~~~ 466 (467)
+++++++||+++| |+||.++.++.+-
T Consensus 682 ~~~~a~i~M~~v~~lfIp~~~~~~~it~s 710 (868)
T KOG1934|consen 682 SIVIALICMFLVCFLFIPNPLCVFWITLS 710 (868)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999999999998 9999999998763
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-57 Score=471.88 Aligned_cols=429 Identities=23% Similarity=0.339 Sum_probs=343.0
Q ss_pred CeeehhhhhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHh
Q 012271 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (467)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~ 80 (467)
|.+|..+.++|+ .+.++|+..+|++||+.+.+|.++++|++.++|+.||..+++++|||.||+||||+|++.|+|+
T Consensus 422 m~~ya~~t~lr~----~~~~~sq~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~ 497 (1143)
T KOG1935|consen 422 MVAYACLTQLRW----WDAVQSQGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYR 497 (1143)
T ss_pred HHHHHHHHHHHh----hhhhccccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHH
Confidence 456667777763 3689999999999999999999999999999999999889999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 012271 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI--------- 151 (467)
Q Consensus 81 ~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L--------- 151 (467)
+..+. ++++++.|+++|+||++||+.++.+|+.+++.|+|++|.||+++|+.+.++|+..++.|||++
T Consensus 498 e~~~~---~~~~~~~lk~tG~Svl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~ 574 (1143)
T KOG1935|consen 498 EVVKL---HEEMGELLKETGMSVLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKA 574 (1143)
T ss_pred HHhhh---HHHHHHHHHHhCcchhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 87654 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------------HhhcccccccccchhhHHH
Q 012271 152 -------------------------------------------------------------EVHAPILGLWGVKMVVVSV 170 (467)
Q Consensus 152 -------------------------------------------------------------~~~~~~l~~~~~k~~v~~~ 170 (467)
.+|.||++++++|..|++.
T Consensus 575 ~r~Di~cc~~~~p~~~~~~~~p~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg 654 (1143)
T KOG1935|consen 575 GRRDIFCCFRGNPEMATSQSVPSNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVG 654 (1143)
T ss_pred cccceeEeccCCcccCcCCCCCcccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHH
Confidence 1578999999999999999
Q ss_pred HHHHHHHHHHhhcccccCccccccCCCCChhhhHHHHHhhhcCCCCcEEEEEe-cCCCCCchhhhhhhhccccCCchhHH
Q 012271 171 FLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLL 249 (467)
Q Consensus 171 f~~~~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~~~~~~~f~~~~pv~ivv~-~~dy~~~~~~~~~~c~~~~c~~~sl~ 249 (467)
|.+++++|+||.++.+.|+|..+.+|+++...++.++.+|||+.+ |||.|++ +.||.+.|+ +.
T Consensus 655 ~~allg~slyg~t~~~~GLel~DvvP~~t~~~~FL~Aq~kyFsfY-~m~aVtqg~~dyp~qQ~---------------ll 718 (1143)
T KOG1935|consen 655 FLALLGASLYGMTRSTDGLELTDVVPEHTAEAAFLRAQDKYFSFY-PMFAVTQGPFDYPHQQQ---------------LL 718 (1143)
T ss_pred HHHHHHhhhhheeeecccchhhhcCCCCCcHHHHHHHHhhhcccc-hhheeecCCCCcccHHH---------------HH
Confidence 999999999999999999999999999999999999999999997 6999999 599998743 22
Q ss_pred HHHHHhccCCCCccccCC-----CCchHHHHHhhcCCC--CCCcc---cccCCCCc-CCCCCCCCCCCCCCCCCC-----
Q 012271 250 NEISRASSIPELSYIAKP-----AASWLDDFLVWTSPE--AFGCC---RKFVNGTY-CPPDDQPPCCSPDEEPCG----- 313 (467)
Q Consensus 250 ~~~~~~~~~~~~s~i~~~-----~~~Wl~~f~~~l~~~--~~~c~---~~~~~~~~-~~~~~~~~~~~~~~~~~~----- 313 (467)
.+++ .++.+.+|+.++ ...||.-|++|+... +|+.. ..+.-.++ -+.++ ++.++
T Consensus 719 ~dyh--~sf~s~k~vik~~n~~l~~~Wl~~~r~WL~~lq~~fded~a~G~~~~~~~v~n~S~--------d~~lA~kL~~ 788 (1143)
T KOG1935|consen 719 DDYH--QSFGSSKYVIKNENEQLPKYWLHLFRDWLQSLQRAFDEDWAKGRFTLTSGVSNGSE--------DARLAYKLLC 788 (1143)
T ss_pred HHHH--HHhccCceeecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCh--------HHHHHHHHHH
Confidence 3333 245555676654 259999999999862 22111 11111111 11111 12221
Q ss_pred -CCCCccCCCcccccC-CCCCCCCChhhHhhchhHhhc-cCC----CCcccCCCCCCCccceee--cCCCCceEEEeEEE
Q 012271 314 -VNGVCKDCTTCFRHS-DLVNNRPSTEQFREKLPWFLN-ALP----SADCAKGGHGAYSTSVDL--NGYESGIIQASEFR 384 (467)
Q Consensus 314 -~~~~~~~c~tc~~~~-~~~~~~~~~~~F~~~L~~FL~-~~p----~~~c~~gg~~~y~~~v~~--~~~~~~~I~asrf~ 384 (467)
.... .+|..-.-+. ..+.+..+++.||.||..|.+ |+- |+.=...-+..|..+.+. ..+...++..++|+
T Consensus 789 qtG~~-~~~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmP 867 (1143)
T KOG1935|consen 789 QTGSL-DNDAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMP 867 (1143)
T ss_pred hcCCc-cchhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCc
Confidence 0000 1122111111 123367789999999977764 311 000000012233333111 12567789999999
Q ss_pred EecccCCChhHHHHHHHHHHHHHHhhhccCCcceeeccCcchhhhhHHHHHHHHHHHHHHHHHHHhHhc---ccchHHHH
Q 012271 385 TFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGQYSKHH---KDNSIISK 461 (467)
Q Consensus 385 ~~~~~l~~~~d~i~al~~~R~ia~~~~~~~~~~vfpys~~fvF~EQY~~I~~~~~~~l~ial~~vfvi~---~~~~~~~~ 461 (467)
+|.++|.++.|++++++++|..|++++ ++|++.||.+++|+|||||++++.+.++.+.+-++++|.+| ++|||.+.
T Consensus 868 FyL~gL~dTa~Ivk~I~~iR~~c~~~~-s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~npWaA~ 946 (1143)
T KOG1935|consen 868 FYLNGLTDTADIVKAIESIRASCEEYT-SLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLLNPWAAG 946 (1143)
T ss_pred hHHhhhhhHHHHHHHHHHHHHHHhhcc-cCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 999999999999999999999999998 58999999999999999999999999999999999999997 99999998
Q ss_pred hhh
Q 012271 462 LVL 464 (467)
Q Consensus 462 ~~~ 464 (467)
||.
T Consensus 947 Liv 949 (1143)
T KOG1935|consen 947 LIV 949 (1143)
T ss_pred HHH
Confidence 875
No 7
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.96 E-value=1.2e-29 Score=273.03 Aligned_cols=144 Identities=24% Similarity=0.420 Sum_probs=137.4
Q ss_pred CeeehhhhhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHh
Q 012271 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (467)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~ 80 (467)
||+|++++||+.+. ++||++||++|++++++|+++++|++.++|++++. +.+++|||+|+||+||+|+|.+ |+
T Consensus 72 mflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~-I~eViPFLvLaIGVDnifiLa~-~~ 144 (886)
T TIGR00920 72 AVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTG-LNEALPFFLLLIDLSKASALAK-FA 144 (886)
T ss_pred HHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHhHHHhhhchhhHHHHHh-hh
Confidence 89999999999763 89999999999999999999999999999999998 6999999999999999999954 46
Q ss_pred -hccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 81 -RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 81 -~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
++.+..++++||+++|+++||||++|++|++++|++|+++++|++|.||.|++++|+++|++|+|||+|+|
T Consensus 145 ~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~L 216 (886)
T TIGR00920 145 LSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACL 216 (886)
T ss_pred hccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999
No 8
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.96 E-value=1.3e-28 Score=222.28 Aligned_cols=135 Identities=51% Similarity=0.824 Sum_probs=130.8
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhh
Q 012271 19 YVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVE 98 (467)
Q Consensus 19 ~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~ 98 (467)
+|+||+||+++|++++++|+++++|++.++|++++++..+++||+++++|+||+|+++++|++++++.+.++|+++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999977789999999999999999999999999888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 99 VGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 99 ~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
+|++++.|++|++.+|++++.+++|++|+||+++++++++||++++|+|||+|..
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsl 135 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSL 135 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999943
No 9
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.94 E-value=5.4e-25 Score=238.56 Aligned_cols=209 Identities=20% Similarity=0.299 Sum_probs=183.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc-CCCCHHHHHHHHHhhhh
Q 012271 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVG 100 (467)
Q Consensus 22 sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g 100 (467)
++++-++++++.+++|++|++|+++++|+|++. .+...|.+++|+|+||..|++|+|.++. .+.+.+|++.+|++++|
T Consensus 218 r~~~~~llpL~~~l~sv~~tlG~m~llG~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g 296 (727)
T COG1033 218 RSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTG 296 (727)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Confidence 345557999999999999999999999999997 8999999999999999999999998875 45899999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hc---------------cccc---
Q 012271 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV---HA---------------PILG--- 159 (467)
Q Consensus 101 ~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~---~~---------------~~l~--- 159 (467)
++++++++||++||++..++.+|++++||+.+.+|+..+++..+++.|+++.. +. +.+.
T Consensus 297 ~avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~~~~~~k~~~~~~~~~~l~~i~ 376 (727)
T COG1033 297 PAVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFLSSLTVLPALLILIPKGRKKREEKKDSKKGKLEKRLSKIA 376 (727)
T ss_pred cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhhhhhcccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997721 10 0010
Q ss_pred --ccccchhhHHHHHHHHHHHHHhhcccccCccccccCCCCChhhhHHHHHhhhcCCCCcEEEEEecCCCCCch
Q 012271 160 --LWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSES 231 (467)
Q Consensus 160 --~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~~~~~~~f~~~~pv~ivv~~~dy~~~~ 231 (467)
....++.++++..++.++|.||..+++.+.|.++++|+|++..+.++.+++.|++..+.+++++.-|-.||+
T Consensus 377 ~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~ 450 (727)
T COG1033 377 KIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPE 450 (727)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChH
Confidence 011245677778888999999999999999999999999999999999999999888999999955547774
No 10
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.94 E-value=3.1e-24 Score=238.95 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=179.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGP 101 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~ 101 (467)
++..++.+++.+++++++++|+++++|++++. ++.++|.+++|+|+||.+|++++|+++ .++.+.+|++.++++++|+
T Consensus 216 s~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~ 294 (719)
T TIGR00921 216 RWWRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGR 294 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccH
Confidence 34567888999999999999999999999996 788899999999999999999999876 4678899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------cccc-
Q 012271 102 SITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA---------------------PILG- 159 (467)
Q Consensus 102 si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~---------------------~~l~- 159 (467)
++++|++|+++||++..++++|++|.||+.+++|+++.++.++|++|+++.... +++.
T Consensus 295 ~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv~~~~l~~l~~lPall~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (719)
T TIGR00921 295 AVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKVKKEIIAIGGKSSEIEEELSK 374 (719)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999983110 0010
Q ss_pred --cc--ccchhhHHHHHHHHHHHHHhhcccccCccccccCCCCChhhhHHHHHhhhcCCC-CcEEEEEecCCCCCc
Q 012271 160 --LW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG-PPLYFVVKDYNYSSE 230 (467)
Q Consensus 160 --~~--~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~~~~~~~f~~~-~pv~ivv~~~dy~~~ 230 (467)
++ ..+..++++++++.+++.+|..+++.+.|..+++|+|++..+.++.++++|++. .|++++++..|..++
T Consensus 375 ~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~ 450 (719)
T TIGR00921 375 VLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDP 450 (719)
T ss_pred HHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCH
Confidence 00 123445667778888999999999999999999999999999999999999875 688999886666555
No 11
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.90 E-value=2.9e-21 Score=219.29 Aligned_cols=205 Identities=19% Similarity=0.239 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCccc----chhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhh
Q 012271 25 LLGLSGVILVMLSVLGSVGFFSAIGVKST----LIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEV 99 (467)
Q Consensus 25 ~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~----~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~ 99 (467)
..++..++.+.+++++++|++.++|.+.+ .....+++.+++|+|+||.+|++++|+++ .++.++++++.++++++
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~ 277 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGT 277 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34667788888999999999999998643 32334456788999999999999999987 45678999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------cc
Q 012271 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP---------------------IL 158 (467)
Q Consensus 100 g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~---------------------~l 158 (467)
|++++.+++|++++|+...++++|.+|.||+.++++++++++..+|+.|+++....+ +.
T Consensus 278 g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a~gvl~a~l~~ltllPall~l~g~~~~~~~~~~~~~~~~~~~l~~~v 357 (910)
T TIGR00833 278 GKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTLEGREGLMKPGRKSKIRFIWRRLGTAV 357 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccchHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999943211 11
Q ss_pred cccccchhhHHHHHHHHHHHHHhhcccccCccccccCCCCChhhhHHHHHhhhcCCC--CcEEEEEec-CCCCCch
Q 012271 159 GLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG--PPLYFVVKD-YNYSSES 231 (467)
Q Consensus 159 ~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~~~~~~~f~~~--~pv~ivv~~-~dy~~~~ 231 (467)
.++ +..+++++++++++++++..+++.+.|..+.+|+|++.++.++.++++|+.+ .|++++++. .+..+++
T Consensus 358 ~r~--p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~ 431 (910)
T TIGR00833 358 VRR--PWPILVTTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPA 431 (910)
T ss_pred Hhc--cHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHH
Confidence 222 3456667778888999999999999999999999999999999999999776 789999984 5777763
No 12
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.70 E-value=2.8e-16 Score=178.24 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (467)
..+..++++.+++++++|++.++|.+++. ++.+.+.+++|+|+||.+|++++|++. .++.+.++++.+++++.|++++
T Consensus 295 ~~l~~l~~i~~s~~~~~~~~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~ 373 (862)
T TIGR03480 295 LVFAVLVTLIVGLILTAAFATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALL 373 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35667777889999999999999999997 888889999999999999999999876 3566788999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------cccccccchhh
Q 012271 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP-----------------ILGLWGVKMVV 167 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~-----------------~l~~~~~k~~v 167 (467)
++++|+++||++...+++|.++.||+.+++|+++.++..+++.|+++....| +..+ .+..+
T Consensus 374 ~s~lTt~~gf~~l~~~~~~~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 451 (862)
T TIGR03480 374 LAALATAAGFFAFLPTDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPGYATLAPLDAFLRR--HRRPV 451 (862)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCccchhHHHHHHHHHh--ccHHH
Confidence 9999999999999999999999999999999999999999999999843211 1112 24456
Q ss_pred HHHHHHHHHHHHHhhcccccCccccccCCCCChhhhHHHHHhhhcCCCC
Q 012271 168 VSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGP 216 (467)
Q Consensus 168 ~~~f~~~~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~~~~~~~f~~~~ 216 (467)
++++++++++++++..+++.+.|+.+++|+++...+.++.+.+.+..++
T Consensus 452 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~ 500 (862)
T TIGR03480 452 LGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSP 500 (862)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCC
Confidence 6677788889999999999999999999999999989888888776543
No 13
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.61 E-value=4.2e-15 Score=161.87 Aligned_cols=131 Identities=18% Similarity=0.306 Sum_probs=122.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhh
Q 012271 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGP 101 (467)
Q Consensus 22 sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~ 101 (467)
.++.-++++++.++.++.|++|+|+++|+|+++ .+..+--+++|+|+||++|++++|+++.++..++|++.++++++|+
T Consensus 590 Rs~~~~i~~iipi~~~v~~~~~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ 668 (727)
T COG1033 590 RSPLKAIIPLIPIAIVVGWNFGLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGK 668 (727)
T ss_pred hchHHhHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhch
Confidence 456668999999999999999999999999998 8888888999999999999999999886544499999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 102 SITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 102 si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
+++.+++|++.||++..+|+.|.+++||+.++++++++.+.+++++||++..
T Consensus 669 ail~s~ltt~~GF~aLi~S~f~i~snfGll~~~~il~sl~asl~~lPall~~ 720 (727)
T COG1033 669 AILASALTTAIGFLALIFSPFPIISNFGLLTVIGILLSLLASLVLLPALLVL 720 (727)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999853
No 14
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.60 E-value=4.9e-15 Score=150.41 Aligned_cols=134 Identities=25% Similarity=0.439 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH----HHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc-CCCCHHHHHHHHHh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALV 97 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl----~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~ 97 (467)
++..++..++.+++++++++|+ ....|.+++..+..++..+++|+|+|+.+|++++|+++. ++.+.++++.++++
T Consensus 166 s~~~~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~ 245 (333)
T PF03176_consen 166 SVRAALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVR 245 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 4666888999999999999999 345677887644455556889999999999999999874 56788899999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012271 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (467)
Q Consensus 98 ~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~ 156 (467)
++|.+++.+++|+++||++..++++|++|.||+.+++|++++++..+|++|+++....+
T Consensus 246 ~~g~~i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~ 304 (333)
T PF03176_consen 246 STGRAILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGR 304 (333)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999964443
No 15
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.53 E-value=5.1e-14 Score=157.10 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=119.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhH
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (467)
++..++.+++.+++++++++|+++++|++++. .+.++..+++|+|+||.+|++++|+++.++.+.++++.++++++|++
T Consensus 590 s~~~~l~~~i~~~~~~~~~~g~~~~~gi~l~~-~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~a 668 (719)
T TIGR00921 590 NPIKAVFPLIAIGSGILWAIGLMGLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPG 668 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHH
Confidence 35667888899999999999999999999997 77778889999999999999999998754478899999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
++.+++|+++||+++.+++.|.+|.||+..+++++++++..++++|++|
T Consensus 669 i~~s~lt~~~gf~~l~~s~~~~~~~~g~~~~~~i~~~~~~~l~llPall 717 (719)
T TIGR00921 669 ILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALL 717 (719)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986
No 16
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.35 E-value=4.1e-12 Score=144.43 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=106.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhH
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (467)
++..++..++.+++++++++|+++++|++++. .+.++-.+++||||||.+|++++|++..+... ....++|.+
T Consensus 735 s~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~-~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~~------~~~~~~g~a 807 (862)
T TIGR03480 735 RVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNF-ANIIALPLLLGLGVDFGIYMVHRWRNGVDSGN------LLQSSTARA 807 (862)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHhhhhhhHHHHHHHHHHhccchh------HHHhhhHHH
Confidence 44557888888999999999999999999997 66666678899999999999999987643211 112467999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
|++|++|+++||++.++++.|.+++||+.+++|++++.+..++++||++
T Consensus 808 i~~saltt~~gf~~l~~s~~~~~~~~G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 808 VFFSALTTATAFGSLAVSSHPGTASMGILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999986
No 17
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.30 E-value=3.7e-11 Score=137.05 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=170.2
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHhhcC----cccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHH
Q 012271 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNA 95 (467)
Q Consensus 21 ~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi----~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~ 95 (467)
...+..++..++++.++...+.|+..++.. ..+......+..+.+|+|+|+...++.+|++. ..+.++++.++.+
T Consensus 205 f~s~i~a~lpL~t~~~s~~~a~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a 284 (937)
T COG2409 205 YRSVITAFLPLITVGLSLLVAQGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTA 284 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 334556778888899999999998875433 33334566677788999999999999999976 3457999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------
Q 012271 96 LVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH--------------------- 154 (467)
Q Consensus 96 l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~--------------------- 154 (467)
++.+|..+..++.|-++++..+.+.++|.++..++.++++|.++.+..+|+.||++...
T Consensus 285 ~~tag~~V~~sg~tV~~a~~~l~~a~~~~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~~~~~~~~~~w~~~ 364 (937)
T COG2409 285 YRTAGKTVAFSGLTVAIALLGLSFARLPFLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPDPKRASESRFWRRV 364 (937)
T ss_pred HHhccceeehhhhHHHHHHHHHHhcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCCcchhhhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999422
Q ss_pred cccccccccchhhHHHHHHHHHHHHHhhcccccCccccccCCCCChhhhHHHHHhhhcCC--CCcEEEEEe-cCCCCCc
Q 012271 155 APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRV--GPPLYFVVK-DYNYSSE 230 (467)
Q Consensus 155 ~~~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~~~~~~~f~~--~~pv~ivv~-~~dy~~~ 230 (467)
+.++.++|. .+++..++.++....-...++.|.+..+.+|.+.+.++.++..+++|+. ..|..++++ +.|..|+
T Consensus 365 ~~~v~~~P~--~~l~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~~ 441 (937)
T COG2409 365 GTLVVRRPL--AILVASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRTP 441 (937)
T ss_pred eeEEeeccH--HHHHHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcCh
Confidence 122333432 3444555666666667788999999999999999999999999999965 468999998 5776665
No 18
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.23 E-value=3e-11 Score=113.30 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-c--CCCCHHHHHHHHHhhhhhH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-P--MELVLETRISNALVEVGPS 102 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~--~~~~~~~ri~~~l~~~g~s 102 (467)
.++..++.+..++++++|++.++|++++. .+.+.+.+++|+++||.+|+.+++++. . ++.++++++.++.++.+++
T Consensus 72 ~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~ 150 (192)
T TIGR00916 72 GAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSR 150 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCeEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 35556667777799999999999999996 888888899999999999999999875 3 4678999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHH
Q 012271 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQ 143 (467)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~ 143 (467)
++.|++|++++|+...+.+.|.++.|++...+|++..++..
T Consensus 151 il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 151 IIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987754
No 19
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.19 E-value=1.1e-10 Score=133.43 Aligned_cols=131 Identities=24% Similarity=0.196 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCc-----ccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALV 97 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~-----~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~ 97 (467)
.+...+..++.+++|+.+++|+..+++.+ ++..+..+++.+++|+|+||.+|++++|+++.++. .++++.++++
T Consensus 767 S~~~pl~~l~~v~ls~~~s~G~~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~g-~~~av~~a~~ 845 (910)
T TIGR00833 767 APVAPIVLIGSVALSYLWALGLSVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPAG-NRTGIIRALG 845 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhcC-ccHHHHHHHH
Confidence 34557778899999999999999876544 33323345577889999999999999999886433 4688999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 012271 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD-FFLQVTAFVALIEVH 154 (467)
Q Consensus 98 ~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~-f~~~it~f~a~L~~~ 154 (467)
++|..|+.+++|++++|++..++++|.++.||+..++|++++ ++..+++.||++...
T Consensus 846 ~tg~~I~~a~~~~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~ 903 (910)
T TIGR00833 846 STGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLL 903 (910)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999995 666688889988543
No 20
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.11 E-value=4.8e-10 Score=129.52 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (467)
++...+++.++++.+++++.++|.++|. ++..-..+.+|++|||++++++..++. .++.++.+++.++.++++.+++.
T Consensus 359 ~li~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~ 437 (1025)
T PRK10614 359 TLIPAVAVPVSLIGTFAAMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLS 437 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4555677788999999999999999996 777777788999999999988766654 45678899999999999999999
Q ss_pred HHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------ccc---------
Q 012271 106 ASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHA---------------PIL--------- 158 (467)
Q Consensus 106 tslT~~~~F~~~~~s~i---p~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~---------------~~l--------- 158 (467)
|++|++++|+-..+.+- +.++.|++..+.++++.++.++|+.|++...+. +.+
T Consensus 438 stltti~~f~Pl~~~~g~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Y~~ 517 (1025)
T PRK10614 438 MSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQKRLRGFGRMLVALQQGYGR 517 (1025)
T ss_pred HHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999887655 569999999999999999999999999873220 001
Q ss_pred -ccc--ccchhhHHHHHHHHHHHHHhhcccccCcccc---------ccCCCCChhhhHHHHHh
Q 012271 159 -GLW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQGYFDNTT 209 (467)
Q Consensus 159 -~~~--~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~---------~~lp~dS~~~~~~~~~~ 209 (467)
.++ .+|..+++++++++++++++..+++..+-|. -.+|+++.+.+..+..+
T Consensus 518 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~~~ 580 (1025)
T PRK10614 518 SLKWVLNHTRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQ 580 (1025)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHHHH
Confidence 001 1245566777777888888877666555432 23477777654444433
No 21
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.10 E-value=8.5e-10 Score=126.35 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=116.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhH
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (467)
.++-++.-++++++.++..+|+|.+.|+++++ +.++.-.+.+|+|||+..|+.++|.... .++++|+.++|+++|.|
T Consensus 988 ~~~~a~iv~l~v~~i~v~v~G~M~lwgI~Lna-VS~vnLimsIGisVefsaHI~~~F~~~~--~~r~eR~~~AL~~~G~p 1064 (1145)
T TIGR00918 988 NPWTAGLIVLVLALMTVELFGMMGLLGIKLSA-IPVVILIASVGIGVEFTVHIALGFLTAI--GDRNRRAVLALEHMFAP 1064 (1145)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCccH-HHHHHHHHHHhhhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHhhHH
Confidence 44445666677788888899999999999997 7888888889999999999999998543 35799999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012271 103 ITLASLSEFLAFAVGSFIPMP-ACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (467)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip-~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~ 156 (467)
++.+++||++|.+++++++.. .++.|+...++.|++.++-.++++|.+|...+|
T Consensus 1065 Vl~g~lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp 1119 (1145)
T TIGR00918 1065 VLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGP 1119 (1145)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987 789999999999999999999999999965544
No 22
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.08 E-value=4e-10 Score=112.16 Aligned_cols=128 Identities=10% Similarity=0.194 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHHHHhhhh
Q 012271 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (467)
Q Consensus 24 ~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~g 100 (467)
+..++..++.+..+++.++|++.++|++++. ....-...++|+++||.+++.+++++.. ++.+.+|.+.++.++..
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~ 228 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDL-TVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTL 228 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 4458888899999999999999999999996 7777777889999999999999998753 35789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 101 ~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
.+++.|++|++++|+...+...+.++.|++...+|++...+.++++.|+++.
T Consensus 229 ~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~~Gli~~~~~sl~i~p~l~~ 280 (289)
T PRK13022 229 SRTIITSLTTLLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLLL 280 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998899999999999999999999999999999874
No 23
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.05 E-value=1.3e-09 Score=121.48 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (467)
.++..++...++++.++|++.++|.+++. ....-..+++|+++||.+++.++++++ .++.+.++++.++.++++.+++
T Consensus 290 ~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il 368 (755)
T PRK13024 290 PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTIL 368 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhCcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57778888899999999999999999996 777778888999999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
.|++|++++|+...+...+++|.|++...+|+++.++..+++.|+++.
T Consensus 369 ~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~l~~ 416 (755)
T PRK13024 369 DSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLE 416 (755)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888889999999999999999999999999883
No 24
>PRK09579 multidrug efflux protein; Reviewed
Probab=98.98 E-value=5.2e-09 Score=120.83 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (467)
++...+++-+|++.+++.+.++|.++|. ++.+-..+++|+.|||+++++..+++. .++.++.+++.++.++.+.+++.
T Consensus 358 ~l~~~~~IP~s~~~~~~~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~ 436 (1017)
T PRK09579 358 VLIPVVTIPLSMIGVLFFMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVS 436 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444567778999999999999999996 666666778899999999999888765 45778999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 106 tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
|++|++++|+-..+.+ -+.++.|++..+.++++.++.++|+.|++..
T Consensus 437 stlTti~~f~Pl~f~~g~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~ 486 (1017)
T PRK09579 437 MTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCA 486 (1017)
T ss_pred HHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876643 2668999999999999999999999998873
No 25
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.90 E-value=8.5e-09 Score=113.80 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (467)
.|+..++...+.++.++|++.++|.+++. ....--.+.+|++||+.+++.++++++ .++.+.++++.++.++++.+|+
T Consensus 302 ~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il 380 (758)
T PRK13023 302 LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIV 380 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999996 666666688899999999999999875 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
.+++|++++|+...+...++++.|++-..+|++...+..+++-|+++.
T Consensus 381 ~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l~~ 428 (758)
T PRK13023 381 DANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIA 428 (758)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888999999999999999999999999998883
No 26
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=98.88 E-value=2.2e-08 Score=115.89 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (467)
++...+++.+|++.+++++.++|+++|. ++.+-..+++|+.|||+++++..+++. .++.++.++..++.++.+.+++.
T Consensus 368 ~~i~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~ 446 (1040)
T PRK10503 368 TIIPGVAVPLSLIGTFAVMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIIS 446 (1040)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5556677789999999999999999997 666666778899999999998887765 45567788999999999999999
Q ss_pred HHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------ccc---c----
Q 012271 106 ASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHA----------------PIL---G---- 159 (467)
Q Consensus 106 tslT~~~~F~~~~~s~i---p~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~----------------~~l---~---- 159 (467)
+++|++++|+-..+++- +.++.|++..+.++++.++..+|+.|.+...+. +.+ .
T Consensus 447 ~tltti~~f~Pl~~~~g~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~y~ 526 (1040)
T PRK10503 447 LTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASERMFDRVIAAYG 526 (1040)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccchHHHHHHHHHHHHHHHHH
Confidence 99999999998877654 679999999999999999999999998763221 001 0
Q ss_pred ---cc--ccchhhHHHHHHHHHHHHHhhcccccCccc---------cccCCCCChhhhH---HHHHhhhc
Q 012271 160 ---LW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQ---------QIVLPRDSYLQGY---FDNTTEYL 212 (467)
Q Consensus 160 ---~~--~~k~~v~~~f~~~~~~si~g~~~i~~g~d~---------~~~lp~dS~~~~~---~~~~~~~f 212 (467)
++ ..|..++++.++++++|++....++.++=| .--+|+++.+.+. .+.+++..
T Consensus 527 ~~l~~~l~~~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l 596 (1040)
T PRK10503 527 RGLAKVLNHPWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVI 596 (1040)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 00 125556666777777777776666655432 2245666665444 34444444
No 27
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=98.86 E-value=8.5e-09 Score=109.45 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (467)
.|+..++...++++.++|++.++|.+++. ....--.+++|+++||.+++.++.+++ +++.+..+++.++.+++..+|+
T Consensus 357 ~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il 435 (498)
T PRK05812 357 FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTIL 435 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999999996 666666688899999999999999875 4567889999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
.|++|++++|+...+....+++.|++...+|+++..+..+++.|+++..
T Consensus 436 ~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~l~~~ 484 (498)
T PRK05812 436 DSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNL 484 (498)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876667899999999999999999999999998753
No 28
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.86 E-value=2.5e-08 Score=115.57 Aligned_cols=185 Identities=16% Similarity=0.187 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (467)
++...+++.+|++.+++++.++|+++|. ++.+-..+.+|+.|||++++++.+++. .++.++.+++.++.++.+++++
T Consensus 365 ~li~~~~iP~s~~~~~~~~~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~ 443 (1044)
T TIGR00915 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4555566778999999999999999996 777777788899999999999888764 3467899999999999999999
Q ss_pred HHHHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cc-------c---
Q 012271 105 LASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA-------------PI-------L--- 158 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s---~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~-------------~~-------l--- 158 (467)
.|++|++++|+-..+. .-+.++.|++..+.++++.++..+++.|++...+. .+ +
T Consensus 444 ~ttltti~~flPl~~~~G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 523 (1044)
T TIGR00915 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGEHHEFKGGFFGWFNRMFDRS 523 (1044)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHHHHH
Confidence 9999999999987764 35678999999999999999999999998763210 00 0
Q ss_pred cc-------c--ccchhhHHHHHHHHHHHHHhhcccccCccc---------cccCCCCChhhhH---HHHHhhhc
Q 012271 159 GL-------W--GVKMVVVSVFLAFTVASIALSTRIEAGLEQ---------QIVLPRDSYLQGY---FDNTTEYL 212 (467)
Q Consensus 159 ~~-------~--~~k~~v~~~f~~~~~~si~g~~~i~~g~d~---------~~~lp~dS~~~~~---~~~~~~~f 212 (467)
.+ + ..|..++++.+++++++++...+++.++=| .-.+|+++.+.+- .+.++++.
T Consensus 524 ~~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l 598 (1044)
T TIGR00915 524 THGYENGVGKILKRRGRYLLVYVLLVGGMVWLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQKVLAQVEKYL 598 (1044)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCceEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 00 0 134456666667777787777666655432 2257888776544 34444444
No 29
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=98.86 E-value=6.5e-09 Score=107.77 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (467)
.|+..++....+++.++|++.++|.+++. ....--.+++|+++||.+++.+++++. .++.+.++++.++.++++.+++
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~ 350 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIF 350 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeeeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 47778888899999999999999999996 666666788899999999999999876 4566889999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVAL 150 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~ 150 (467)
.|++|++++|+...+...+.++.|++...+|+++.++..+++-..+
T Consensus 351 ~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~~ 396 (397)
T TIGR01129 351 DANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396 (397)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998876667899999999999999999999876654
No 30
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=98.84 E-value=3.5e-08 Score=114.36 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc--CCCCHHHHHHHHHhhhhhHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~--~~~~~~~ri~~~l~~~g~si~ 104 (467)
++...+++.++++.++|++.++|+++|. ++.+.+.+.+|+.|||++|+++.+++.. ++.++.+++.++.++.+.+++
T Consensus 365 ~li~~~~iP~si~~t~~~~~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~ 443 (1037)
T PRK10555 365 TLIPTIAVPVVLMGTFSVLYAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALV 443 (1037)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4556677788999999999999999997 7888888999999999999999998763 477899999999999999999
Q ss_pred HHHHHHHHHHHhhccC-C--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 105 LASLSEFLAFAVGSFI-P--MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s-~--ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
.+++|++++|+=..+. . -.-++.+++....++++.++..+|+.|++..
T Consensus 444 ~stltti~~flPl~~~~G~~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~ 494 (1037)
T PRK10555 444 GIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCA 494 (1037)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887764 2 2446889999999999999999999998773
No 31
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=98.83 E-value=2.8e-08 Score=111.05 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (467)
.|+...+...++++.++|++.++|.++|. ....--.+.+|++||+.+++..+.+++ ..+.+..+++.++.++++.+++
T Consensus 396 ~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il 474 (855)
T PRK14726 396 LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIV 474 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57777888899999999999999999996 444444577799999999999999886 4566888999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
.+++|++++|+...+.+..++|.|++-..+|++..++..+++-|+++.
T Consensus 475 ~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~~ 522 (855)
T PRK14726 475 DANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVA 522 (855)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888889999999999999999999999999873
No 32
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=98.83 E-value=2.6e-08 Score=112.78 Aligned_cols=123 Identities=21% Similarity=0.277 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~t 106 (467)
++..+++++.-.+.-+|.|.+.|+++++ +.++.-.+.+|++||...|+.++|.+.... ++++|+.++|++.|+|++..
T Consensus 672 ~~~~~~~i~~i~~~v~G~m~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv~~~ 749 (798)
T PF02460_consen 672 SLIVTLSILSIDVGVIGFMSLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPVLQG 749 (798)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHHHHH
Confidence 3333444444444566999999999998 778888888999999999999999987644 89999999999999999999
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 107 SLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 107 slT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
++||.+|.+.+++++.+.++.|.-...+.+++.++-.+.++|++|
T Consensus 750 ~~st~l~~~~l~f~~~~~~~~ff~~~~l~~~~~~~hglv~lPv~l 794 (798)
T PF02460_consen 750 ALSTFLGVLPLAFSPSYIFRVFFKTVFLVIIFGLLHGLVFLPVLL 794 (798)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 33
>PRK09577 multidrug efflux protein; Reviewed
Probab=98.81 E-value=4.4e-08 Score=113.47 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (467)
++..++++-++++.+++++.++|+++|. ++.+-..+.+|+.|||++++++.+++. .++.++.+++.++.++.+++++
T Consensus 364 ~liv~~~iP~s~~~~~~~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~ 442 (1032)
T PRK09577 364 TLIPTLVVPVALLGTFGVMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIV 442 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5556677788999999999999999996 888888899999999999999988775 3567889999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
.+++|++++|+-..+.+ -.-++.|++..++++++.++..+|+.|+++.
T Consensus 443 ~~tlt~~~~flPl~~~~g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~ 493 (1032)
T PRK09577 443 GITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALCA 493 (1032)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998766543 3458999999999999999999999998773
No 34
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=98.77 E-value=2.5e-08 Score=97.16 Aligned_cols=121 Identities=12% Similarity=0.224 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-c--CCCCHHHHHHHHHhhhh
Q 012271 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-P--MELVLETRISNALVEVG 100 (467)
Q Consensus 24 ~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~--~~~~~~~ri~~~l~~~g 100 (467)
+..++..++.+.++++.++|++.++|+++|. ....-..+++|+.+||.+++.+++++. + ++.+.++.+.++.++..
T Consensus 121 ~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~ 199 (246)
T TIGR00966 121 WRFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTL 199 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccCeEEEehHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 3457778888899999999999999999996 777777788999999999999888764 2 36789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012271 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVT 145 (467)
Q Consensus 101 ~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it 145 (467)
.+++.|++|++++|+...+.+-+.++.|++....|+++..+.++.
T Consensus 200 ~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 200 SRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888899999999999999998877764
No 35
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=98.76 E-value=5.7e-08 Score=112.60 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (467)
++...+++-+|++.+++++.++|+++|. ++.+-..+.+|+.|||++++++.+++. ..+.++.+++.++.++.+++++
T Consensus 365 ~li~~~~iP~sl~~~~~~~~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~ 443 (1049)
T PRK15127 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455666778889999999999999996 777777788999999999999998775 2467889999999999999999
Q ss_pred HHHHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 105 LASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s---~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
.+++|++++|+=..+. .-.-++.|++..+.++++.++..+|+.|++.
T Consensus 444 ~~tltt~~~f~Pl~~~~G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~ 493 (1049)
T PRK15127 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 (1049)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988773 3345789999999999999999999999876
No 36
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=98.75 E-value=6.2e-08 Score=112.48 Aligned_cols=187 Identities=18% Similarity=0.220 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cC-CCCHHHHHHHHHhhhhhHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-ELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~-~~~~~~ri~~~l~~~g~si~ 104 (467)
++.-.+++-+|++.++.++.++|+++|. ++..---+.+|+=|||+++++...+|. .. +.++.++..++.+++++|++
T Consensus 358 ~liv~~~IPisi~~t~~~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~ 436 (1021)
T PF00873_consen 358 ALIVALSIPISILGTFIFMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPIL 436 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4445566678999999999999999996 554444455555599999999888665 44 78999999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------h
Q 012271 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV---------------------------H 154 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~---------------------------~ 154 (467)
.+++|++++|+=..+.+ =.-++.|++..++++++.++..+|+.|++..+ |
T Consensus 437 ~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 437 ASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccccccccccch
Confidence 99999999999887765 34588899999999999999999999987721 2
Q ss_pred ccccccc-ccchhhHHHHHHHHHHHHHhhcccccCccc---------cccCCCCChhhhHHH---HHhhhcCC
Q 012271 155 APILGLW-GVKMVVVSVFLAFTVASIALSTRIEAGLEQ---------QIVLPRDSYLQGYFD---NTTEYLRV 214 (467)
Q Consensus 155 ~~~l~~~-~~k~~v~~~f~~~~~~si~g~~~i~~g~d~---------~~~lp~dS~~~~~~~---~~~~~f~~ 214 (467)
.+.+... ..|..+++++++++++|++...+++.++=| .--+|+++.+.+..+ .+++....
T Consensus 517 ~~lL~~~L~~~~~~l~i~l~l~i~s~~l~~~l~~ef~P~~d~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~ 589 (1021)
T PF00873_consen 517 RRLLRWALRHPKLVLLIALLLLILSLFLFPFLPKEFFPPSDRGEFYVSVELPPGTSLEETDAIVKQVEDILKE 589 (1021)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHCTSEBESS----TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhcccccCCcccCCcccCCceEEEEeeccCchHHHHHHHHHHHHHHHHh
Confidence 2222110 135556777777888888888777755533 225677777665443 34445443
No 37
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=98.66 E-value=3.3e-07 Score=85.69 Aligned_cols=129 Identities=17% Similarity=0.248 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc---cCCCCHHHHHHHHHhhh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ---PMELVLETRISNALVEV 99 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~---~~~~~~~~ri~~~l~~~ 99 (467)
|...++.+++.....++.++|++.++|++++. ....--.+++|.++||.+++.++.+++ .++.+.++++.++++++
T Consensus 53 ~~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~t 131 (189)
T PF02355_consen 53 RWRFALAAIIALIHDVLITLGIFSLFGIELTL-PSIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQT 131 (189)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 33357888888888899999999999999996 555555788899999999999999987 24678899999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 100 g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
-..+..|++|+.++.....+..-.+++.|++...+|++.....++.+-++++.
T Consensus 132 l~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~ss~~ia~~l~~ 184 (189)
T PF02355_consen 132 LSRTIDTSLTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYSSLFIARPLLY 184 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99899999999999999988888999999999999999999988877777663
No 38
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=98.65 E-value=1.7e-07 Score=93.39 Aligned_cols=122 Identities=12% Similarity=0.199 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHH
Q 012271 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (467)
Q Consensus 24 ~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si 103 (467)
++.++..++.....++.++|++.++|++++......++ .++|+++||.+++.+++++.. .+.++++.+++++.
T Consensus 158 ~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i~gll-~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~---- 230 (292)
T PRK08578 158 PVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALL-MLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG---- 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHH-HHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----
Confidence 45677788888889999999999999999974444443 668999999999999997653 57888898888543
Q ss_pred HHHHHHHHHHHHhhccC----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 104 TLASLSEFLAFAVGSFI----PMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 104 ~~tslT~~~~F~~~~~s----~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
..+++|++++|+...+. ..+.+|.|++...+|++++++.++.+-++++.
T Consensus 231 i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l~~Gli~s~~~tl~~~~~~l~ 283 (292)
T PRK08578 231 ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVLIFGLLADLMNTWLLNAGILR 283 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999887643 57999999999999999999999999999884
No 39
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.62 E-value=2e-07 Score=108.43 Aligned_cols=183 Identities=16% Similarity=0.112 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cC-----C-----CCHHHHHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-----E-----LVLETRISNA 95 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~-----~-----~~~~~ri~~~ 95 (467)
++...+++-+|++.++.++.++|+++|. ++.. -+++|+-|||+++++....+. .+ + .++.+++.++
T Consensus 368 ~liv~~~iP~s~~~~~~~m~~~g~sln~-~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g 444 (1051)
T TIGR00914 368 ALIAATVIPLSLLITFIGMVFQGISANL-MSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAA 444 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHH
Confidence 4455567778999999999999999996 4443 456799999999988765432 11 2 4567889999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------
Q 012271 96 LVEVGPSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------ 154 (467)
Q Consensus 96 l~~~g~si~~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~------------------ 154 (467)
.++.+.+++.|++|++++|+=..+.+ =..++.|++..+.++++.++..+|+.|++...+
T Consensus 445 ~~~~~~pil~stlTti~~flPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~ 524 (1051)
T TIGR00914 445 SREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKR 524 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccChHHHHHHH
Confidence 99999999999999999999876533 256899999999999999999999999987322
Q ss_pred --ccccccc-ccchhhHHHHHHHHHHHHHhhcccccCcccc---------ccCCCCChhhh---HHHHHhhhc
Q 012271 155 --APILGLW-GVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQG---YFDNTTEYL 212 (467)
Q Consensus 155 --~~~l~~~-~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~---------~~lp~dS~~~~---~~~~~~~~f 212 (467)
.+.+... ..|+.+++++++++.+++++..+++.++-|. ...|+++.+.+ ..+.+++..
T Consensus 525 ~Y~~~l~~~l~~~~~~i~~~~~ll~~~~~~~~~l~~~f~P~~d~~~~~v~~~~~~Gts~e~t~~~~~~vE~~l 597 (1051)
T TIGR00914 525 RYEPLLERVLAWPAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSLAQSVAMQQTLEKLI 597 (1051)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCcCcCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1111000 1355677777788888888887776665431 12466665544 344445544
No 40
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.61 E-value=2.2e-07 Score=105.51 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (467)
|+...+.+++.++.++|++.++|.+++. ....--.+++|++|||.+++..+.++. ..+.+..+++.++.+++..+|+.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5556666678888999999999999996 555555677899999999999999876 45678899999999999999999
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 106 ASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 106 tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
|++|++++++.+.+....+++-|++...+|++...+..+++-|+++.
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~ 1059 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFM 1059 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877677779999999999999999999999998873
No 41
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.59 E-value=1.5e-07 Score=105.17 Aligned_cols=128 Identities=13% Similarity=0.227 Sum_probs=113.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHHHHhhh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~ 99 (467)
++..++++++..+.-++.++|+++++|+++++ .....-..++|.++||.+++.+++|+.. ++.+.++.+.+++.++
T Consensus 599 ~~~~~~~aiial~~dvii~~g~~~l~~~~~~~-~~iaall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~t 677 (755)
T PRK13024 599 EWTFSLGAILALLHDVLIVIGFFSLFRLEVDL-TFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQT 677 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceEcH-HHHHHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 55568889999999999999999999999997 4444445678999999999999998863 4578899999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 100 g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
...++.|++|+++++++..+...|.++.|++...+|+++....++.+-++++
T Consensus 678 l~rti~ts~tt~~~~~~L~~~g~~~i~~fa~~l~iGii~g~~ssifia~~l~ 729 (755)
T PRK13024 678 LSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLW 729 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987777766
No 42
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=98.53 E-value=3e-07 Score=105.19 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHHH
Q 012271 29 SGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASL 108 (467)
Q Consensus 29 ~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~tsl 108 (467)
...+.+-+|++.++++|..+|+++|. ++..--.|.+|+=|||+++.+...+|..++.++.|+..++++|++-+++-+++
T Consensus 358 I~~iaiPlsLlgtf~~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~Tl 436 (1009)
T COG0841 358 IPALAVPVSLLGTFAVMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAITL 436 (1009)
T ss_pred EeeeechHHHHHHHHHHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668999999999999999997 77777778888889999999887777544899999999999999999999999
Q ss_pred HHHHHHHhhccC-Ch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------hcc---c
Q 012271 109 SEFLAFAVGSFI-PM--PACRVFSMFAALAVLLDFFLQVTAFVALIEV-------------------------HAP---I 157 (467)
Q Consensus 109 T~~~~F~~~~~s-~i--p~v~~F~i~aa~~v~~~f~~~it~f~a~L~~-------------------------~~~---~ 157 (467)
|.+++|+=.++. .+ .-.|.|++-.++++++..+..+|+-|++=.. |.. +
T Consensus 437 vliaVF~Pi~f~~G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~~~~~~~~~~~~~~~~~Y~~~l~~ 516 (1009)
T COG0841 437 VLIAVFLPMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPKGFFGWFNRFFDRLEDRYQRGLRW 516 (1009)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 999999876543 22 3489999999999999999999998886511 111 1
Q ss_pred ccccccchhhHHHHHHHHHHHHHhhcccccCccccc---------cCCCCChhhhH
Q 012271 158 LGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGY 204 (467)
Q Consensus 158 l~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~---------~lp~dS~~~~~ 204 (467)
+.++ |..++++++++++.+.|+...++.++=|.+ -+|+++.+.+-
T Consensus 517 ~L~~--~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t 570 (1009)
T COG0841 517 VLRR--RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERT 570 (1009)
T ss_pred HHhh--HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHH
Confidence 1222 677888888999999999999998886533 57888665543
No 43
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=98.45 E-value=7e-07 Score=95.84 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~-Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si 103 (467)
.|+...+...+.++.++|++.++ |.++|. ....--.+.+|+.||+.+++..+.+++ .++.+..+++.+..+++..+|
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVDanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~I 542 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTI 542 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhccCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 36677788889999999999998 999996 545555577899999999999999876 456688899999999999999
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 104 ~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
+.+++||+++|+...+..-.++|-|++-..+|++..++..+++-|+++..
T Consensus 543 ldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~l~~~ 592 (604)
T PRK12933 543 FDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINL 592 (604)
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776666799999999999999999999998888753
No 44
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=98.43 E-value=7.1e-07 Score=88.90 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHHHHhhhh
Q 012271 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (467)
Q Consensus 24 ~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~g 100 (467)
+..++..+++....++.++|.+.++|.+++. ...+--..++|++++|.+++.++.++.. ++.+.+|.+.++..+.-
T Consensus 149 ~~~~l~al~al~~dv~~~l~~l~l~g~~l~~-~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~l 227 (297)
T PRK13021 149 WRLASGALFALVHDVIFVLAFFALTQMEFNL-TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATF 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4457778888899999999999999999995 5555556788999999999999998653 45688999999999998
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 101 ~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
.++++|++|++++.+...+..-+.+|.|++....|++.....++.+-++++
T Consensus 228 rr~l~TslTt~l~llpL~l~G~~~~~~fA~~li~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 228 SRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLP 278 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888878899999999999999999999887766665
No 45
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=98.37 E-value=1.1e-06 Score=98.62 Aligned_cols=129 Identities=13% Similarity=0.217 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHHHHhhh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~ 99 (467)
++..|+++++..+.=++.++|++.++|.+++. ...+--..++|++++|.+++.+++++.. ++.+.++.+..++.++
T Consensus 694 ~~~fa~~avial~hDv~i~~g~~~l~g~~ls~-~~iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~t 772 (855)
T PRK14726 694 EWQFAVGAIIATLHDVILTLGLFVLTGIEFNL-TSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQT 772 (855)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 34458888999999999999999999999996 5555556778999999999999998653 3456566666666766
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 100 g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
..-+++|++|++++++..++...+.++.|++...+|++.....++++-++++.
T Consensus 773 l~Rii~TslTTll~llpL~l~G~~~i~~fai~li~Gli~gt~sSifvAspll~ 825 (855)
T PRK14726 773 LSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLI 825 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66699999999999999988788999999999999999999999988888773
No 46
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.32 E-value=2.2e-07 Score=102.98 Aligned_cols=134 Identities=19% Similarity=0.342 Sum_probs=116.7
Q ss_pred eeee-cchhHHHHHHHHHHHHHHHHHHHHH-hhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc------------
Q 012271 18 FYVS-SKVLLGLSGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP------------ 83 (467)
Q Consensus 18 ~~v~-sk~~l~~~gv~~~~~s~~~s~Gl~~-~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~------------ 83 (467)
.|++ +.++..+++++.+++++..++++.. .+|+.+-+.+..+.-++++|||.||+|++..+|++..
T Consensus 342 v~i~t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~ 421 (999)
T KOG3664|consen 342 VWIYTGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSAS 421 (999)
T ss_pred EEEecCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcc
Confidence 3445 4668899999999999999999986 5788988878888889999999999999999994310
Q ss_pred -------CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 84 -------MELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 84 -------~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
.....++++...+.+...+|++|++|++.+|+....+|++.+|.|+++++..+.+++..+++++||..
T Consensus 422 ~~~~l~~~~~ll~~~~~l~~~h~~~smfvt~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~ 496 (999)
T KOG3664|consen 422 FFLELSDHTELLENVFALTLRHASFSMFVTSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASV 496 (999)
T ss_pred cccccccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchh
Confidence 12345678888999999999999999999999999999999999999999999999999999999933
No 47
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=98.29 E-value=7.8e-06 Score=95.72 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHH
Q 012271 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 25 ~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~ 104 (467)
+-++.-++++.++++-.+|+|.+.|+++|+ ++.+--.+.+|++|+-.-|+.++|.+.. ..++.+|+.++++++|.|++
T Consensus 1074 ~~aliv~l~I~~i~~~~~g~M~~~gisLN~-vSlv~Li~avGisV~f~~hI~~~f~~~~-~~~~~~ra~~al~~vg~~v~ 1151 (1204)
T TIGR00917 1074 LSAVNVVISVGMIVVNLVGIMHLWNISLNA-VSVVNLVMAKGISIEFCSHINAQFSTSK-HFSRNHRAKEALGGMGSSVF 1151 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHhhhHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHH
Confidence 335556667788888999999999999997 7777777888999999999999998653 45789999999999999999
Q ss_pred HH-HHHHHHHHHhhccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 012271 105 LA-SLSEFLAFAVGSFIPMPACRVFSMFAALA-VLLDFFLQVTAFVALIE 152 (467)
Q Consensus 105 ~t-slT~~~~F~~~~~s~ip~v~~F~i~aa~~-v~~~f~~~it~f~a~L~ 152 (467)
.. ++|+++||+.+++++...++.|-.-.-++ |++..+=.+.|+|.+|.
T Consensus 1152 ~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS 1201 (1204)
T TIGR00917 1152 SGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLS 1201 (1204)
T ss_pred HHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 68999999999999999999875444443 36677777888888773
No 48
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.25 E-value=2.4e-06 Score=99.55 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (467)
++.-++++-+|++.++..+.++|.+++. ...+-..+++|+.|||++++++.+++. .++.+.++++.++.++...+|++
T Consensus 905 ~lii~~~iPl~~~g~~~~l~~~g~~l~~-~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl~ 983 (1051)
T TIGR00914 905 ALLVFTGIPFALTGGVFALWLRGIPLSI-SAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLM 983 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHH
Confidence 3444555666777777677889999995 666667778899999999999998865 45678999999999888899999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 106 tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
|++|+++||+-.++.+ -+..+.+++..+.|+++..++++++.|+++.
T Consensus 984 ttltti~g~lPl~~~~g~~~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~ 1033 (1051)
T TIGR00914 984 TALVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYR 1033 (1051)
T ss_pred HHHHHHHHHHHHHhcCCCChhhhcCceEEEEchHHHHHHHHHHHHHHHHH
Confidence 9999999999987753 4557788999999999999999999999874
No 49
>COG4258 Predicted exporter [General function prediction only]
Probab=98.08 E-value=5.5e-05 Score=79.76 Aligned_cols=179 Identities=18% Similarity=0.206 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHH
Q 012271 28 LSGVILVMLSVLGSVG-FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (467)
Q Consensus 28 ~~gv~~~~~s~~~s~G-l~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~t 106 (467)
+.|+++++.+.++++- .+..|| +... ++.+.-+-++|+.+|+.+++...-++.....++- +..+|.-|.+++.
T Consensus 284 lLgvls~gig~laglvAt~laFg-~lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~----rsaaev~paL~la 357 (788)
T COG4258 284 LLGVLSIGIGALAGLVATLLAFG-ELHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPW----RSAAEVRPALLLA 357 (788)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh-hHhH-HHHHhhhhheeecccceeeehhhccCCCCCCChh----HHHHHhhHHHHHH
Confidence 3455555555555542 233454 3333 5667777788999999998865433322223333 3478889999999
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhccccccccc-chhhHHHHHHH
Q 012271 107 SLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-----------VHAPILGLWGV-KMVVVSVFLAF 174 (467)
Q Consensus 107 slT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~-----------~~~~~l~~~~~-k~~v~~~f~~~ 174 (467)
-+|+.++|.+..++++|.+|..++|+.+|+..+++....+.|.+.. ..++++.-++. |+....+.++.
T Consensus 358 llTtvlayatmlfs~fpgLrQLa~faivGL~aAaltvrfllP~L~~~a~~rpv~~~arlarwlaa~~~~~w~la~llVal 437 (788)
T COG4258 358 LLTTVLAYATMLFSPFPGLRQLAIFAIVGLLAAALTVRFLLPWLCRGAPVRPVPAMARLARWLAAWRRNKWLLAGLLVAL 437 (788)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHhcccccchhhhHHHHH
Confidence 9999999999999999999999999999999999999999998882 12223221111 11112222222
Q ss_pred --HHHHHHhhcccccCccccccCCCCChhhhHHHHHhhhc
Q 012271 175 --TVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYL 212 (467)
Q Consensus 175 --~~~si~g~~~i~~g~d~~~~lp~dS~~~~~~~~~~~~f 212 (467)
...-.-|.+..+.+.|..++-|.+-.+..--..+...-
T Consensus 438 ~~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~ 477 (788)
T COG4258 438 ALASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALT 477 (788)
T ss_pred HHHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHh
Confidence 22335677788888888888887755544444444444
No 50
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.05 E-value=3e-05 Score=77.40 Aligned_cols=133 Identities=11% Similarity=0.213 Sum_probs=110.1
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHHHH
Q 012271 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNAL 96 (467)
Q Consensus 20 v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l 96 (467)
+|=+.-.|++++++.+-=++.++|+++++|+++++ .+...-.-++|-+++|.+++.++.|+.. +..+..|.+..++
T Consensus 153 ~RFe~~~a~aaI~al~hDvii~~g~~slfgiE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si 231 (305)
T COG0341 153 FRFEWRFALAAILALLHDVIITLGFFSLFGIEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSI 231 (305)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHHhheeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHH
Confidence 34455558999999999999999999999999997 4444445677999999999999998853 3566778888888
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 97 VEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 97 ~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
.++-.-...|++|+.++-....+-.=+.++.|++..-+|++....-++.+=++++-.
T Consensus 232 ~qTlsRti~Ts~ttll~~~~l~~fgg~~l~~fa~~llvGii~gtySSifiA~pll~~ 288 (305)
T COG0341 232 NQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLL 288 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888899999999997777765559999999999999999988888777777743
No 51
>COG4258 Predicted exporter [General function prediction only]
Probab=98.02 E-value=1.6e-05 Score=83.64 Aligned_cols=109 Identities=23% Similarity=0.315 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHH
Q 012271 28 LSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLAS 107 (467)
Q Consensus 28 ~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~ts 107 (467)
+-..+-+++++.+++..+.+.|+|+|. ...+--.|++|+|.+++..+-++= +++ .|... +-.++.+.+
T Consensus 673 lrvllP~v~a~~~~~A~~a~aGvplnL-fhllal~LvlgvG~nYalFfs~~~---~~~---ae~lt-----tl~alala~ 740 (788)
T COG4258 673 LRVLLPSVLALGCGLAVLAMAGVPLNL-FHLLALVLVLGVGINYALFFSNAG---DPR---AEPLT-----TLLALALAM 740 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHcccchhhhhhccc---CCC---CchHH-----HHHHHHHHH
Confidence 334555678889999999999999996 777777899999999998774432 111 11111 456789999
Q ss_pred HHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 108 LSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFV 148 (467)
Q Consensus 108 lT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~ 148 (467)
+||.++|+...+|.+|.+++||+-.+.|++.+|++.-...|
T Consensus 741 ltTlltfgLLa~Sa~pvLssfG~tlasGiila~vlApL~mp 781 (788)
T COG4258 741 LTTLLTFGLLAFSATPVLSSFGITLASGIILAFVLAPLAMP 781 (788)
T ss_pred HHHHHHHHHHHhcccHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998765443
No 52
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=98.01 E-value=2.1e-05 Score=88.51 Aligned_cols=115 Identities=22% Similarity=0.262 Sum_probs=102.0
Q ss_pred HHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccC
Q 012271 41 SVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFI 120 (467)
Q Consensus 41 s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s 120 (467)
.+|.+++-|+++++ ++++.-..-+|-.||..-|+.-.|.+.+...++++|+..+|+..|.|++..+++|++|.+.+++.
T Consensus 718 V~G~lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V 796 (868)
T KOG1934|consen 718 VFGFLSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFV 796 (868)
T ss_pred HhhhhHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhc
Confidence 35888899999998 77777777778889999999888876655468999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012271 121 PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (467)
Q Consensus 121 ~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~ 156 (467)
|...++.|.--.-+.+.+..+=-+.++|.+|..+.+
T Consensus 797 ~sYmv~vF~KTv~LVv~~GllHGLv~LPviLs~f~~ 832 (868)
T KOG1934|consen 797 PSYMVQVFFKTVVLVVTLGLLHGLVFLPVILSLFPP 832 (868)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999965443
No 53
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=97.97 E-value=4e-05 Score=80.04 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 012271 35 MLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAF 114 (467)
Q Consensus 35 ~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F 114 (467)
...++..+|++.++|.+++. ....--.+.+|++||+.+++.+..++... .+.++.+.+..+++..+|+.|++|+++++
T Consensus 296 ~~~v~~~lg~l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~ 373 (417)
T PRK08343 296 LSEVIIILGFAALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAM 373 (417)
T ss_pred HHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788999999999996 55666668889999999999877665432 26778888999999999999999999999
Q ss_pred HhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 115 AVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 115 ~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
+...+....++|-|++-..+|+++..+++=-+|--++
T Consensus 374 lpL~~~g~g~ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 374 SPLAVMGLGDLKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888766778999999999999987665554444333
No 54
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=97.95 E-value=1.5e-05 Score=92.75 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (467)
++.-++++-+|++-++..+.++|.+++. +..+--.+++||-|||+++++...++. .++.+..+++.++-++-..||+
T Consensus 898 pliI~~~IPls~~Ga~~~l~~~g~~l~~-~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIl 976 (1049)
T PRK15127 898 PFSVMLVVPLGVIGALLAATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPIL 976 (1049)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHH
Confidence 3444555667778888888889999995 555555677899999999999988764 3478899999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 105 ~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
+|++|+++||+=.++.. -+..+-+++....|+++..++++++.|++...
T Consensus 977 mTtlTti~gllPl~l~~G~g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~ 1028 (1049)
T PRK15127 977 MTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVV 1028 (1049)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887753 35677799999999999999999999998753
No 55
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=97.86 E-value=5.5e-05 Score=88.13 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHHH
Q 012271 28 LSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITLA 106 (467)
Q Consensus 28 ~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~t 106 (467)
+.-++++-+|++-++-.+.++|.+++. +..+--.+++||-|+|++++++..++. .++.+.++++.++-++-..||++|
T Consensus 898 liI~~~iPlsl~G~~~~l~~~g~~l~~-~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlmT 976 (1044)
T TIGR00915 898 VSVMLVVPLGIIGALLATSLRGLSNDV-YFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILMT 976 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHHH
Confidence 344445566666666666789999995 666666678899999999999998865 356789999999999999999999
Q ss_pred HHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 107 SLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 107 slT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
++|+++||+=.++.. -+..+-+++....|+++..++++++.|++...
T Consensus 977 tltti~gllPla~~~g~g~~~~~plai~vigGL~~st~ltL~vvP~ly~~ 1026 (1044)
T TIGR00915 977 SLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVV 1026 (1044)
T ss_pred HHHHHHHHHHHHHhcCCChHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887653 35578889999999999999999999998754
No 56
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.77 E-value=8.6e-05 Score=82.57 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=106.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHHHHhhh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~ 99 (467)
+.-.|+.+++..+-=++.++|+++++|++++. .....-..++|-+++|.+++..+.|+.. ++.+.++.+-.++.++
T Consensus 600 ~~~fav~AviALiHDvlivlg~fsl~~~e~~l-~~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqT 678 (758)
T PRK13023 600 RWQLALGAVLSTLHDVVILSGMFIVFRMEFNL-WSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQT 678 (758)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCceecH-HHHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 44457888888888899999999999999996 4444445677899999999999998863 3456788888888888
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 100 g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
-.-...||+||.++.++..+-.-+++|.|++...+|+++...-++..-.+++
T Consensus 679 l~RTI~TS~TTll~~l~L~ifGg~~i~~Fal~lliGiv~GtySSIfIAspl~ 730 (758)
T PRK13023 679 LSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLL 730 (758)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 7778999999999999998888899999999999999998887876656655
No 57
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=97.73 E-value=7.7e-05 Score=86.84 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhh--ccCCCCHHHHHHHHHhhhhhHHHH
Q 012271 28 LSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR--QPMELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 28 ~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~--~~~~~~~~~ri~~~l~~~g~si~~ 105 (467)
+.-++++-+|++-++..+.++|.+++. +..+--.+++||-|||+++++....+ ..++.+++|++.++-++-..||++
T Consensus 892 liI~~tIPls~~G~~~~l~l~g~~l~~-~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlm 970 (1040)
T PRK10503 892 ITILSTLPTAGVGALLALMIAGSELDV-IAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILM 970 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHH
Confidence 333445556666666556789999995 66666667889999999999987653 356788999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 106 tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
|++|+++||+=.++.+ -+..+-+++....|+++..++++++.|++...
T Consensus 971 Ttltti~gllPlal~~G~g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~ 1021 (1040)
T PRK10503 971 TTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLL 1021 (1040)
T ss_pred HHHHHHHHHHHHHHhcCCChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887653 34578899999999999999999999998743
No 58
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=97.63 E-value=0.00022 Score=83.13 Aligned_cols=125 Identities=13% Similarity=0.056 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHHH
Q 012271 28 LSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITLA 106 (467)
Q Consensus 28 ~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~t 106 (467)
+.-++++-+|++-++..+.++|.+++. ...+=-.+++||-|+|+++++...++. .++.+.++++.++-++-..||++|
T Consensus 897 liI~~~IPlal~G~l~~L~i~g~~l~~-~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlmT 975 (1037)
T PRK10555 897 FSVMLVVPLGVIGALLATWMRGLENDV-YFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMT 975 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHH
Confidence 344445566777777777888999995 666666677899999999999988764 456789999999999999999999
Q ss_pred HHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012271 107 SLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (467)
Q Consensus 107 slT~~~~F~~~~~s---~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~ 153 (467)
++|+++||+=.++. .-+..+-+++....|+++..++++++.|++...
T Consensus 976 tltti~gllPlal~~g~g~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~ 1025 (1037)
T PRK10555 976 SLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVL 1025 (1037)
T ss_pred HHHHHHHHHHHHHhcCCChHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765 235678899999999999999999999998753
No 59
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.60 E-value=0.00021 Score=81.92 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=102.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-----cCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHH
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAI-----GVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISN 94 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~-----Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~ 94 (467)
++-.|+.+++..+-=++.++|+++++ |++++. .....-.-++|-+++|.+++..+.|+.. +..+.++-+-+
T Consensus 1256 EW~FAvgAVIALlHDVLItLGifsl~~f~lfgiEfdl-tfIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~ 1334 (1403)
T PRK12911 1256 EWRYAFSAICALIHDLLATCAVLVALHFFLQKIQIDL-QAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILIND 1334 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeEEcH-HHHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHH
Confidence 45568888888887888888887764 999996 4444444567899999999999998863 34567777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 95 ~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
++.++-.-.+.||+||+++.++..+-.-+.++.|.+...+||++...-++..-++++
T Consensus 1335 SINQTLsRTI~TSlTTLLallaLllFGG~sI~~FAlALLIGIIvGTYSSIFIASPLl 1391 (1403)
T PRK12911 1335 ALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLL 1391 (1403)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776667999999999999988888899999999999999999888887666655
No 60
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.00035 Score=74.60 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHH
Q 012271 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (467)
Q Consensus 25 ~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si 103 (467)
..|+.+.+...+.++..+|+++++|.+++. ....=-.|.+|.+||.-+++..+.+++ +.+.+..+++...++++...|
T Consensus 366 ~~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI 444 (506)
T COG0342 366 LAGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTI 444 (506)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhcccccEEeeHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 457777777788999999999999999996 444444577888999999999999876 456889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012271 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (467)
Q Consensus 104 ~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~ 154 (467)
+=+.+||+++-..+..-..-++|=|++-.++|++...+..+++.-.+++.+
T Consensus 445 ~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~~~ 495 (506)
T COG0342 445 LDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLNLL 495 (506)
T ss_pred HHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999889999999999999999999999998877776544
No 61
>PRK09579 multidrug efflux protein; Reviewed
Probab=97.58 E-value=0.00014 Score=84.61 Aligned_cols=122 Identities=8% Similarity=0.007 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc--CCCCHHHHHHHHHhhhhhHHHHHH
Q 012271 30 GVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLAS 107 (467)
Q Consensus 30 gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~--~~~~~~~ri~~~l~~~g~si~~ts 107 (467)
-++++-+|++-++..+.++|.+++. ...+=-.+++||-|+|++++++.+++.. ++.+.++++.++-++-..||++|+
T Consensus 874 I~~~iPla~~G~~~~L~i~~~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTt 952 (1017)
T PRK09579 874 ILVTVPLSICGALIPLFLGVSSMNI-YTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTT 952 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHH
Confidence 3344445555555445678999995 5555556778999999999999887543 478899999999999999999999
Q ss_pred HHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 108 LSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 108 lT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
+||++||+=.++.. -+..+-+++....|+++..++++++.|++..
T Consensus 953 lTti~gllPla~~~g~g~~~~~plA~~iigGL~~st~ltL~~iP~ly~ 1000 (1017)
T PRK09579 953 AAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYT 1000 (1017)
T ss_pred HHHHHHHHHHHHhcCCChHHhCCceeeeehHHHHHHHHHHHHHHHHHH
Confidence 99999999877642 2445568888889999999999999999874
No 62
>PRK09577 multidrug efflux protein; Reviewed
Probab=97.50 E-value=0.00028 Score=82.20 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (467)
.+.-++++-++++-++..+.++|.+++. ...+--.+++||-|+|+++++...++. .++.+..|++.++-++-..||++
T Consensus 892 plii~~~iPl~l~G~~~~l~l~g~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlm 970 (1032)
T PRK09577 892 PFAVMLVVPLGVIGAVLGVTLRGMPNDI-YFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVM 970 (1032)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHH
Confidence 3444445556666666556788999995 545555578899999999999888754 45778999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012271 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (467)
Q Consensus 106 tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~ 154 (467)
|++|+++|++=.++.. -+..+-.++...-|+++..++++.+.|++....
T Consensus 971 Ttltti~gllPla~~~g~g~~~~~pla~~iigGL~~sT~lTL~vvP~ly~l~ 1022 (1032)
T PRK09577 971 TSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVV 1022 (1032)
T ss_pred HHHHHHHHHHHHHHccCCChHHhcCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887653 345566888899999999999999999987543
No 63
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=97.41 E-value=0.00088 Score=78.19 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=98.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc--CCCCHHHHHHHHHhhhh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVG 100 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~--~~~~~~~ri~~~l~~~g 100 (467)
++++-+..+ -+|++-++-.+.++|.+++. ...+=-.+++||-|.|+++++..+++.. ++.+.+|++.++-++=-
T Consensus 888 ~PliIm~~I---Pla~~G~~~~l~i~g~~l~~-~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~Rl 963 (1021)
T PF00873_consen 888 QPLIIMLTI---PLALIGVLLGLFITGQPLSF-MSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRL 963 (1021)
T ss_dssp THHHHHTTH---HHHHHHHHHHHHHTTBEBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eeEEEEecc---chhhHHHHHHHhhccccccc-cceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 454444443 34444444444678999995 6666666778999999999999998864 47789999999998888
Q ss_pred hHHHHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 101 PSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 101 ~si~~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
.||++|++||++|++=.++.. -+-.+-.++...-|+++..++++.+.|++.
T Consensus 964 RPIlmTtlTti~G~lPla~~~g~g~~~~~pla~~iigGL~~stllTL~vvP~ly 1017 (1021)
T PF00873_consen 964 RPILMTTLTTILGMLPLALGIGEGAEFWQPLAIVIIGGLLFSTLLTLIVVPVLY 1017 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccccccccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888754 356788999999999999999999999875
No 64
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=97.20 E-value=0.0011 Score=77.21 Aligned_cols=124 Identities=10% Similarity=0.037 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cC-CCCHHHHHHHHHhhhhhHHHHHH
Q 012271 30 GVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-ELVLETRISNALVEVGPSITLAS 107 (467)
Q Consensus 30 gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~-~~~~~~ri~~~l~~~g~si~~ts 107 (467)
-++++-+|++-++..+.++|.+++. ...+=-..++||-++|+++++....+. .+ +.+..+++.++-++--.||++|+
T Consensus 880 I~~tIPlal~G~~~~L~l~g~~l~~-~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTt 958 (1025)
T PRK10614 880 ILSTLPSAGVGALLALELFNAPFSL-IALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTT 958 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHH
Confidence 3345556666666666778999995 555555677899999999999887754 33 67889999998888888899999
Q ss_pred HHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012271 108 LSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (467)
Q Consensus 108 lT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~ 154 (467)
+|+++|++=.++.. -+..+-+++....|+++..++++++.|++....
T Consensus 959 lTti~GllPlal~~g~g~~~~~pmAi~iigGL~~sT~ltL~vvP~lY~~~ 1008 (1025)
T PRK10614 959 LAALFGALPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFF 1008 (1025)
T ss_pred HHHHHHHHHHHHhcCCCHHHhCCchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877642 245788999999999999999999999987543
No 65
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0025 Score=70.83 Aligned_cols=160 Identities=22% Similarity=0.212 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHH-HHHhhcc----CCCCHHHHHHHHHhhhhh
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV-NAVKRQP----MELVLETRISNALVEVGP 101 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~-~~~~~~~----~~~~~~~ri~~~l~~~g~ 101 (467)
++.-+++.-+|++.++-+|..+|++.|. ++.-=--+.+|+=||.+++++ |++++-. .+..+-+.+.++-+|+++
T Consensus 361 Ali~~~~lPLS~li~f~~M~~~gi~~Nl-MSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~ 439 (1027)
T COG3696 361 ALIVIISLPLSLLIAFIVMNFFGISANL-MSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGR 439 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchh-hcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhh
Confidence 5556677789999999999999999996 332222344455579887655 6666643 234556678889999999
Q ss_pred HHHHHHHHHHHHHHhh-ccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhcccc
Q 012271 102 SITLASLSEFLAFAVG-SFIPMPA--CRVFSMFAALAVLLDFFLQVTAFVALIE--------------------VHAPIL 158 (467)
Q Consensus 102 si~~tslT~~~~F~~~-~~s~ip~--v~~F~i~aa~~v~~~f~~~it~f~a~L~--------------------~~~~~l 158 (467)
|+++..+.-.+.|+=. +++.+.. ++=.+..-.++++.+.++++|+.|++.. .|.|.+
T Consensus 440 ~v~f~~lII~vvf~PIFtL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~r~~~r~Y~plL 519 (1027)
T COG3696 440 PVFFGLLIITVVFLPIFTLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGILPESENPLMRFLIRVYAPLL 519 (1027)
T ss_pred hHhhhhhhheeehhhhheeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 9999988777777642 2222221 2223344455666677888999999872 355544
Q ss_pred ccc-ccchhhHHHHHHHHHHHHHhhccccc
Q 012271 159 GLW-GVKMVVVSVFLAFTVASIALSTRIEA 187 (467)
Q Consensus 159 ~~~-~~k~~v~~~f~~~~~~si~g~~~i~~ 187 (467)
... ..+..++++.++.++++.+...++-.
T Consensus 520 ~~~l~~p~~vl~~A~~~~~~s~~l~~~lG~ 549 (1027)
T COG3696 520 EFVLKLPKLVLLGAVLSLVASLVLLPKLGR 549 (1027)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHhcch
Confidence 211 11334556666667777776655443
No 66
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=96.74 E-value=0.0093 Score=68.93 Aligned_cols=128 Identities=22% Similarity=0.199 Sum_probs=100.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH-----hhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFS-----AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALV 97 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~-----~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~ 97 (467)
+.+-+...+.++.+|..+++|+.. ..|.+.....-.+.-.+++++|.|+...++++.+++......++ +.++++
T Consensus 780 s~~~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~li~r~ree~~~g~~~~-ii~a~~ 858 (937)
T COG2409 780 SVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSDYNILLISRLREEIGAGLRTG-IIRAMR 858 (937)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCchHHHHHHHHHHHHhccccchh-hhhhhc
Confidence 344455566667788888888743 35655443122222236788999999999999998865444555 999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 98 ~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
.+|.-++-..+.-+.+|+....+.+..++.-|.-.++|++++-+..-+++++-+
T Consensus 859 ~tg~Vit~ag~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vPa~ 912 (937)
T COG2409 859 GTGGVITAAGLIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVPAI 912 (937)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999998888887655
No 67
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=96.47 E-value=0.02 Score=63.06 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHH
Q 012271 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (467)
Q Consensus 24 ~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si 103 (467)
+|-+.+-+.++.+....-+|+|+..|+++++ +-+|+-...+|||+.-..|..-+|.-.- .++.+|...++.+.-.+.
T Consensus 942 pWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~-i~aViLi~sVGigveFtvhv~l~FlTs~--G~rs~R~s~al~~~F~Pv 1018 (1143)
T KOG1935|consen 942 PWAAGLIVCSLAIMTVELFGFMGLLGIKLSA-IPAVILIASVGIGVEFTVHVALGFLTAL--GTRSQRASSALQHMFVPV 1018 (1143)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhhceeecc-chhHHHHHHhhhchhhhHHHHHHHHHhh--ccchhHhHHhhhhcchhh
Confidence 3444455555555555667999999999998 8888888889999998888887776432 356788999999999999
Q ss_pred HHHHHHHHHHHHhhccCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012271 104 TLASLSEFLAFAVGSFIPMP-ACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (467)
Q Consensus 104 ~~tslT~~~~F~~~~~s~ip-~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~ 156 (467)
..-++++.++-+.++.++.. .||.|+....+-+.+..+-.+.++|.+|...+|
T Consensus 1019 ~hG~lST~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP 1072 (1143)
T KOG1935|consen 1019 SHGALSTLLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGP 1072 (1143)
T ss_pred hhhHHHHHhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 99999999998888887765 478899888877777777777777777765554
No 68
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=92.38 E-value=0.098 Score=60.75 Aligned_cols=120 Identities=14% Similarity=0.123 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc-CCCCHHHHHHHHHhhhhhHHHHHHHH
Q 012271 31 VILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSITLASLS 109 (467)
Q Consensus 31 v~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~si~~tslT 109 (467)
++++-++++-++.-+.+.|.+++. ...+=-.+++|+-+.|+++|+...++.. ++.++.|++-++-+.=-.||++|+++
T Consensus 880 l~tvPla~iGa~~~L~l~g~~~~i-~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMTtla 958 (1009)
T COG0841 880 MLTVPLGLLGALLALLLTGLPLDV-YAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTSLA 958 (1009)
T ss_pred HhhhhHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHHHHH
Confidence 334445555555556778999884 6666666778999999999998887653 67899999999988889999999999
Q ss_pred HHHHHHhhccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 110 EFLAFAVGSFIPMP---ACRVFSMFAALAVLLDFFLQVTAFVALI 151 (467)
Q Consensus 110 ~~~~F~~~~~s~ip---~v~~F~i~aa~~v~~~f~~~it~f~a~L 151 (467)
+++|..=.++..-. .-+..|+..--|+++.-++++.+.|.+.
T Consensus 959 ~ilG~iPLal~~g~Ga~~r~~lgi~vigGl~~sT~LtL~~vPv~Y 1003 (1009)
T COG0841 959 AILGVLPLALSTGAGAESRQPLGIAVVGGLLVATVLTLFVVPVFY 1003 (1009)
T ss_pred HHHhhhhhhhcccccccccCcceEEEechhHHHHHHHHhhhhhhh
Confidence 99987665543222 3344566666678888888888888764
No 69
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=87.76 E-value=2.6 Score=42.58 Aligned_cols=73 Identities=10% Similarity=-0.094 Sum_probs=59.7
Q ss_pred eEEEEecccCCChhHHHHHHHHHHHHHHhhhccCCcceeeccCcchhhhhHHHHHHHHHHHHHHHHHHHhHhc
Q 012271 381 SEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGQYSKHH 453 (467)
Q Consensus 381 srf~~~~~~l~~~~d~i~al~~~R~ia~~~~~~~~~~vfpys~~fvF~EQY~~I~~~~~~~l~ial~~vfvi~ 453 (467)
.++...+++-.++++..+..+++|++.++..+..+.+++..+.+....|....+..+......++++.++++.
T Consensus 88 ~~~~v~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl 160 (333)
T PF03176_consen 88 ALVVVQLKGDPGSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVL 160 (333)
T ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 3455555554566777788889998988877445889999999999999999999999999999999888875
No 70
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=79.27 E-value=3.4 Score=46.93 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhh-eeeecchHHHHHHHHhhc-cCCCCHHHHHHH-HHhhhhhHHHH
Q 012271 29 SGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLV-LAVGVDNMCILVNAVKRQ-PMELVLETRISN-ALVEVGPSITL 105 (467)
Q Consensus 29 ~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLv-l~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~-~l~~~g~si~~ 105 (467)
+-+..+-+|++-++-.+.+.|.+++ +..+.+|+. .|+.+-|..+|+..+++. .++.+.+|++.+ ++++.- ++++
T Consensus 890 li~~~lP~Al~GGv~~l~l~G~~lS--vas~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvr-p~lM 966 (1027)
T COG3696 890 LIFSNLPFALIGGVIALALRGFNLS--VAAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVR-PKLM 966 (1027)
T ss_pred HHHhcCcHHHhhhHHHhhhcCceEe--ehhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhh-HHHH
Confidence 3333444555555555667788887 556677754 578899999999988875 456788999888 555554 5899
Q ss_pred HHHHHHHHHHhhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012271 106 ASLSEFLAFAVGSF---IPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (467)
Q Consensus 106 tslT~~~~F~~~~~---s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~ 154 (467)
|+++.++|+.=..+ +.-..+|-.++-.--|++-.-++++...|++...+
T Consensus 967 Ta~~~~lGlvPi~~~~g~GsEV~~plA~vviGGl~tst~LtL~vlPaly~~~ 1018 (1027)
T COG3696 967 TALVILLGLLPILWATGAGSEVMRPLAIVVIGGLVTSTALTLLVLPALYALF 1018 (1027)
T ss_pred HHHHHHHhhhhhhhhcCCchHhhccchheeEcceeHHHHHHHHHHHHHHHHH
Confidence 99999999875543 45556677777777777888888888999987544
No 71
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=58.74 E-value=0.97 Score=52.88 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHH-HHHHHHHH
Q 012271 35 MLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITL-ASLSEFLA 113 (467)
Q Consensus 35 ~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~-tslT~~~~ 113 (467)
.+.++--+|+|...|+++|. ...+--..-+||+|+...|++|++...... +..+|..+++...|.+++- .++|...+
T Consensus 1055 ~~~~v~l~g~m~~~~I~~Na-vS~vNlvm~vgi~vef~~hi~~sf~~s~~~-~~~~ra~~~l~s~Gs~v~sgitlt~~~~ 1132 (1201)
T KOG1933|consen 1055 EMILVNLVGFMYLWGISLNA-VSLVNLVMSVGIAVEFCVHITHSFATSSGP-DATERAEEALNSIGSSVFSGITLTKFGG 1132 (1201)
T ss_pred hhhhhhHHHHHHhhceeehh-hhhhhhhhhcchhhhHHHHhhcceeeccCC-chhHHHHHHHhccCcceecceeehhcCc
Confidence 34445556999999999997 666656677899999999999998865433 7889999999999987442 23444555
Q ss_pred HHhhccCChhhHHHHHHHHHHH
Q 012271 114 FAVGSFIPMPACRVFSMFAALA 135 (467)
Q Consensus 114 F~~~~~s~ip~v~~F~i~aa~~ 135 (467)
-.+.++.+...++.|+.-.-++
T Consensus 1133 ~~vl~fa~s~i~~~~~f~~~l~ 1154 (1201)
T KOG1933|consen 1133 IIVLSFAKSQIFQVFYFRMYLG 1154 (1201)
T ss_pred eEEEeeccccEEEEEeehHHHH
Confidence 5555565555555544333333
No 72
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=50.01 E-value=1.3e+02 Score=25.53 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=11.1
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 012271 120 IPMPACRVFSMFAALAVLL 138 (467)
Q Consensus 120 s~ip~v~~F~i~aa~~v~~ 138 (467)
.+.|..+..+...+.++.+
T Consensus 88 ~~~p~~~~a~~~l~~~~~~ 106 (111)
T PF09946_consen 88 NSYPEYTDAGFVLAFSLAF 106 (111)
T ss_pred ccChhHhHHHHHHHHHHHH
Confidence 3667777666655554444
No 73
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.88 E-value=30 Score=28.89 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhhcCcccchhhhhhhhhheee--ecchHHHHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFF--SAIGVKSTLIIMEVIPFLVLAV--GVDNMCILVN 77 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~--~~~Gi~~~~~~~~v~PfLvl~i--Gvd~~f~l~~ 77 (467)
++++|.+...+.+..-+|+. -|++-.+..-..-.++||++|+ |.-|+++.++
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556555544444444444 4676666643455666777775 5556666554
No 74
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=39.74 E-value=43 Score=36.69 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=23.5
Q ss_pred hhhhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012271 6 SVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGV 50 (467)
Q Consensus 6 ~~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~Gl~~~~Gi 50 (467)
.+|+++++..+....|--.+.++.+. +.++++++++...+|.
T Consensus 343 L~AfaSyn~F~NNc~rDAll~S~in~---~ts~~sgfviFsvLg~ 384 (629)
T KOG3659|consen 343 LIAFASYNKFHNNCYRDALLTSIINC---LTSFLSGFVIFSVLGY 384 (629)
T ss_pred hhhhhhhcccccchhhhhHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45677776555555665555544444 4555555555555554
No 75
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=32.12 E-value=18 Score=29.51 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=27.0
Q ss_pred hhhccccccceeeeecchhHHHHHHHHHHHHHHHHH
Q 012271 7 VALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSV 42 (467)
Q Consensus 7 ~~lg~~~~~~~~~v~sk~~l~~~gv~~~~~s~~~s~ 42 (467)
+.-++..+|..+..|.|-|+.++++++.++|++.-+
T Consensus 53 W~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV 88 (100)
T PF06363_consen 53 WVKNKMKSMLSFVERNKAWFTVVSAVTSFISILLLV 88 (100)
T ss_pred HHHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHH
Confidence 344455566677788999999999988888876543
No 76
>PF10942 DUF2619: Protein of unknown function (DUF2619); InterPro: IPR020390 This entry contains membrane proteins with no known function.
Probab=28.61 E-value=1.1e+02 Score=23.71 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHH
Q 012271 89 ETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALA 135 (467)
Q Consensus 89 ~~ri~~~l~~~g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~ 135 (467)
.-++-..++-+||.+++++ +.+|.. |...+++.-|..+++++++
T Consensus 24 Al~iNa~LalVGP~ili~t--t~iGL~-gla~kls~~kl~~I~~GV~ 67 (69)
T PF10942_consen 24 ALKINALLALVGPTILILT--TTIGLA-GLADKLSPSKLLWIFAGVA 67 (69)
T ss_pred HHHHHHHHHHhccHHHHHH--HHHHHH-HHhcccCHHHHHHHHhcce
Confidence 3456668899999999884 555543 4447888889999888765
No 77
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=25.73 E-value=5.3e+02 Score=25.83 Aligned_cols=106 Identities=19% Similarity=0.167 Sum_probs=61.7
Q ss_pred eeecchhHHHHHHHHHHHHHH----HHHHHHHhhcCcccchhhhhhhhhheeeecchH---HHHHHHHhhccCCCCHHHH
Q 012271 19 YVSSKVLLGLSGVILVMLSVL----GSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM---CILVNAVKRQPMELVLETR 91 (467)
Q Consensus 19 ~v~sk~~l~~~gv~~~~~s~~----~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~---f~l~~~~~~~~~~~~~~~r 91 (467)
+.+++......+++..++++. +++=+-...|+|+=. +.++|.|-+.-|+.-. ..+....++. ++.++.
T Consensus 124 ~~~~~~~~~~~~iL~~i~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~---~~~~~~ 198 (305)
T COG3301 124 WGLSEAVHRALEILMAILGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTR---ENPHST 198 (305)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcC---CCccch
Confidence 334444444444444444444 444444578898864 5777876666555432 2222222222 233444
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhhc-cCChhhHHHHH
Q 012271 92 ISNALVEVGPSITLASLSEFLAFAVGS-FIPMPACRVFS 129 (467)
Q Consensus 92 i~~~l~~~g~si~~tslT~~~~F~~~~-~s~ip~v~~F~ 129 (467)
-.+.+.+...++..+-+-...+|..+. +-+.-+.+...
T Consensus 199 ~~~~~~r~~~~v~~~ell~la~f~~l~~~G~~a~~~a~~ 237 (305)
T COG3301 199 ESKFLHRFEIPVVVTELLLLAAFFVLLSLGGVAAARALA 237 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 567888888899999998888888875 55666555544
No 78
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=22.70 E-value=1.6e+02 Score=29.61 Aligned_cols=67 Identities=24% Similarity=0.487 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccCCCCHHHHHHHHHhhhhhHHHHH
Q 012271 28 LSGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (467)
Q Consensus 28 ~~gv~~~~~s~~~s~Gl~~-~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~t 106 (467)
+..+++++..++.++++.+ .+|++-.. .+...|.++++.-++.+-++ |+++. -++++.+.|-|.+.+
T Consensus 194 isaVli~VI~ii~~~sv~~~klGl~~gl-sVtfFPmIILawTIERmSil---WEEeG--------~~ev~~qg~GSLlvA 261 (313)
T PF14402_consen 194 ISAVLIVVILIIAAFSVLSYKLGLEEGL-SVTFFPMIILAWTIERMSIL---WEEEG--------AKEVLKQGGGSLLVA 261 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCC-eeehHHHHHHHHHHHHHHhh---hhhcC--------cHHHHHHhhhHHHHH
Confidence 3456666666666666665 47887776 77889999888877766655 44332 235566666554443
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.37 E-value=76 Score=29.20 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhcCcccchhhhhhhhhheeee
Q 012271 38 VLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 68 (467)
Q Consensus 38 ~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iG 68 (467)
++++++.+.++|.++.+.....+...++|+|
T Consensus 19 i~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg 49 (191)
T PF04156_consen 19 IASGIAALVLFISGLGALISFILGIALLALG 49 (191)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3344444444554444433344444444444
No 80
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=20.18 E-value=1.3e+02 Score=30.28 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhc----ccchHHHHhhhhcC
Q 012271 431 YLDIWRVALINIAVALGQYSKHH----KDNSIISKLVLFYI 467 (467)
Q Consensus 431 Y~~I~~~~~~~l~ial~~vfvi~----~~~~~~~~~~~~~~ 467 (467)
|+.++.+++.++++-++++++.- ..+|++|+++.++|
T Consensus 159 ~LHvl~D~Lgsv~vIia~i~i~~~~w~~~Dpi~si~i~~li 199 (296)
T COG1230 159 YLHVLGDALGSVGVIIAAIVIRFTGWSWLDPILSIVIALLI 199 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHH
Confidence 78889999999999888888873 89999999887653
Done!