Query 012271
Match_columns 467
No_of_seqs 223 out of 1265
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:08:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqp_A Probable secdf protein- 99.4 1.9E-12 6.6E-17 143.0 16.7 128 24-152 295-423 (741)
2 2v50_A Multidrug resistance pr 99.4 2.6E-12 8.9E-17 147.5 14.6 179 25-204 363-587 (1052)
3 4dx5_A Acriflavine resistance 99.4 5.4E-12 1.8E-16 145.0 16.5 188 25-213 363-599 (1057)
4 3ne5_A Cation efflux system pr 99.2 3.7E-11 1.3E-15 138.1 12.2 162 26-190 369-569 (1054)
5 3aqp_A Probable secdf protein- 99.2 1.4E-10 4.7E-15 128.2 13.0 129 23-152 590-721 (741)
6 4dx5_A Acriflavine resistance 99.0 8.2E-10 2.8E-14 126.9 12.6 128 26-154 897-1029(1057)
7 2v50_A Multidrug resistance pr 98.9 1.8E-09 6.3E-14 123.9 10.1 125 27-152 897-1025(1052)
8 3ne5_A Cation efflux system pr 98.9 2.5E-09 8.4E-14 122.9 9.8 129 25-154 902-1045(1054)
9 2kxh_B Peptide of FAR upstream 42.0 18 0.00063 22.3 2.4 20 392-411 6-25 (31)
10 1r7c_A Genome polyprotein; mem 12.1 90 0.0031 19.3 1.3 11 269-279 2-12 (31)
No 1
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.42 E-value=1.9e-12 Score=142.98 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc-cCCCCHHHHHHHHHhhhhhH
Q 012271 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPS 102 (467)
Q Consensus 24 ~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~s 102 (467)
.+.++..++++.++++.++|++.++|.++|. ...+.+.+++|++|||.+|+.++++++ +++.++++++.+++++++.+
T Consensus 295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~ 373 (741)
T 3aqp_A 295 PHLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT 373 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4467888889999999999999999999996 778888999999999999999999886 45678999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 103 i~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
|+.+++|++++|+...+.+.+.+|.|++..++|+++.++..+++.|+++.
T Consensus 374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~ 423 (741)
T 3aqp_A 374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLE 423 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984
No 2
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.37 E-value=2.6e-12 Score=147.48 Aligned_cols=179 Identities=17% Similarity=0.146 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhH
Q 012271 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPS 102 (467)
Q Consensus 25 ~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~s 102 (467)
..++..++++.++++.++|++.++|.++|. ++.+...+++|++|||++|+++.+++. .++.++.+++.++.++.+.+
T Consensus 363 ~~~li~~~~ip~s~~~~~~~l~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~p 441 (1052)
T 2v50_A 363 RATLIPTIAVPVVLLGTFGVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGA 441 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 346677788889999999999999999996 777888899999999999999999775 35788999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------
Q 012271 103 ITLASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI---------------------- 157 (467)
Q Consensus 103 i~~tslT~~~~F~~~~~s~i---p~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~~---------------------- 157 (467)
+++|++|+++||+...+++. +.++.|++..++|+++.++..+|+.|+++..+.+-
T Consensus 442 il~t~ltt~~~f~pl~~~~~~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1052)
T 2v50_A 442 LVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMFL 521 (1052)
T ss_dssp THHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccchhhhHHHHHHH
Confidence 99999999999999999988 58999999999999999999999999988322100
Q ss_pred -cc-------cc--ccchhhHHHHHHHHHHHHHhhcccccCccccc---------cCCCCChhhhH
Q 012271 158 -LG-------LW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGY 204 (467)
Q Consensus 158 -l~-------~~--~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~~---------~lp~dS~~~~~ 204 (467)
+. ++ ..|..+++++++++++++++..+++.++.|.. -+|+++.+.+.
T Consensus 522 ~~~~~y~~~l~~~l~~~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t 587 (1052)
T 2v50_A 522 STTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERT 587 (1052)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccCCCCCCCEEEEEEEcCCCCCHHHH
Confidence 00 00 12345566667777778888888877765532 47888765443
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.36 E-value=5.4e-12 Score=144.99 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=148.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc-C-CCCHHHHHHHHHhhhhhH
Q 012271 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-M-ELVLETRISNALVEVGPS 102 (467)
Q Consensus 25 ~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~-~-~~~~~~ri~~~l~~~g~s 102 (467)
..++..++++.++++.++|++.++|.++|. ++.+...+++|++|||++++++.+++.. + +.++.+++.++.++.+.+
T Consensus 363 ~~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~p 441 (1057)
T 4dx5_A 363 RATLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGA 441 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 346677888899999999999999999996 7777778999999999999999998763 3 789999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------
Q 012271 103 ITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI---------------------- 157 (467)
Q Consensus 103 i~~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~~~~---------------------- 157 (467)
+++|++|++++|+...+++ -+.++.|++..++|+++.++.++|+.|+++..+.+.
T Consensus 442 i~~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1057)
T 4dx5_A 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFE 521 (1057)
T ss_dssp HHHHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCSTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHHHHHHHHH
Confidence 9999999999999999987 677999999999999999999999999988432110
Q ss_pred --------cccc--ccchhhHHHHHHHHHHHHHhhcccccCcccc---------ccCCCCChhhhH---HHHHhhhcC
Q 012271 158 --------LGLW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQGY---FDNTTEYLR 213 (467)
Q Consensus 158 --------l~~~--~~k~~v~~~f~~~~~~si~g~~~i~~g~d~~---------~~lp~dS~~~~~---~~~~~~~f~ 213 (467)
+.++ ..|..+++++++++++++++..+++.++-|. --+|+++.+.+. .+.+++.+.
T Consensus 522 ~~~~~y~~~l~~~lr~~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~ 599 (1057)
T 4dx5_A 522 KSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYL 599 (1057)
T ss_dssp HHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 0000 1245567777778888888888887776432 246777665443 333344444
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.21 E-value=3.7e-11 Score=138.05 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccC------------CCCHHHHHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM------------ELVLETRIS 93 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~------------~~~~~~ri~ 93 (467)
.++..++++.++++.++|++.++|.++|. ++.+...+++|+++||++++++.+++..+ +.++.+++.
T Consensus 369 ~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~ 447 (1054)
T 3ne5_A 369 SALVAIISLPLGLCIAFIVMHFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVIT 447 (1054)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHHHH
Confidence 46677788899999999999999999996 77777788999999999999998876532 567889999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------
Q 012271 94 NALVEVGPSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH---------------- 154 (467)
Q Consensus 94 ~~l~~~g~si~~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~---------------- 154 (467)
++.++.+++++.|++|++++|+...+++ .+.++.|++..++|+++.++..+|+.|+++..+
T Consensus 448 ~a~~~~~~~i~~s~ltt~~~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~~ 527 (1054)
T 3ne5_A 448 DASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNRF 527 (1054)
T ss_dssp TTTTTHHHHHHHHHHHHHHTTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 9999999999999999999999999887 788999999999999999999999999988321
Q ss_pred -----cc---cccccccchhhHHHHHHHHHHHHHhhcccccCcc
Q 012271 155 -----AP---ILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (467)
Q Consensus 155 -----~~---~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~g~d 190 (467)
.+ +..+ .|..+++++++++++++++..+++.++-
T Consensus 528 ~~~~y~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~l~~~f~ 569 (1054)
T 3ne5_A 528 LIRVYHPLLLKVLH--WPKTTLLVAALSVLTVLWPLNKVGGEFL 569 (1054)
T ss_dssp HHHHHHHHHHHHTS--STHHHHHHHHHHHHHTHHHHTTCCBCSS
T ss_pred HHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhCCceEC
Confidence 11 1112 2455667777788888898888877653
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.15 E-value=1.4e-10 Score=128.18 Aligned_cols=129 Identities=12% Similarity=0.246 Sum_probs=116.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc---CCCCHHHHHHHHHhhh
Q 012271 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (467)
Q Consensus 23 k~~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~ 99 (467)
++..++..++.+.++++.++|++.++|++++. ...+...+++|+++||.+|+++++++.. ++.+.++++.+++++.
T Consensus 590 s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~~-~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~ 668 (741)
T 3aqp_A 590 DWTFGVASILAVAHDVAIVAGMYSLLGLEFSI-PTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQT 668 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45567888889999999999999999999996 5555555679999999999999998864 2468999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 100 g~si~~tslT~~~~F~~~~~s~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
+.+++.|++|++++|+...+++.+.++.|++..++|++++.+..+++.|+++.
T Consensus 669 ~~~il~Tsltt~~g~~~L~~~g~~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~ 721 (741)
T 3aqp_A 669 LSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVV 721 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999884
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.03 E-value=8.2e-10 Score=126.90 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhc--cCCCCHHHHHHHHHhhhhhHH
Q 012271 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSI 103 (467)
Q Consensus 26 l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si 103 (467)
.++..++.+.++++.++|.+.++|.+++. ...+...+++|+++||.+++++.+++. .++.+.++++.++.++.+.+|
T Consensus 897 ~~l~~l~~i~~~~~~~~~~l~~~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpi 975 (1057)
T 4dx5_A 897 IPFSVMLVVPLGVIGALLAATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPI 975 (1057)
T ss_dssp THHHHHTTHHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHH
Confidence 35666777888999999999999999996 667777788899999999999999876 457899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012271 104 TLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (467)
Q Consensus 104 ~~tslT~~~~F~~~~~s~---ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~ 154 (467)
++|++|+++||+..++++ .|.++.|++..+.|+++..++++++.|+++...
T Consensus 976 l~t~ltt~~g~~pl~~~~g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~ 1029 (1057)
T 4dx5_A 976 LMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVV 1029 (1057)
T ss_dssp HHHHHHHHHHTHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999884 899999999999999999999999999988533
No 7
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=98.92 E-value=1.8e-09 Score=123.88 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhcc-CCCCHHHHHHHHHhhhhhHHHH
Q 012271 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSITL 105 (467)
Q Consensus 27 ~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~si~~ 105 (467)
++..++++.++++.++|.+.++|.+++. ...+.-.+++|+++||.+|+++.+++.. ++.+.++++.++.++.+.+|++
T Consensus 897 ~l~il~~ip~~~~g~~~~~~~~g~~l~~-~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~ 975 (1052)
T 2v50_A 897 PFSVMLVVPLGVIGALLATSMRGLSNDV-FFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVM 975 (1052)
T ss_dssp THHHHTHHHHHHTTHHHHHHHTTCCBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHH
Confidence 3445566677888889999999999995 6666777888999999999999998764 4678999999999999999999
Q ss_pred HHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012271 106 ASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (467)
Q Consensus 106 tslT~~~~F~~~~~s~i---p~v~~F~i~aa~~v~~~f~~~it~f~a~L~ 152 (467)
|++|+++||+..++++- +.++.+++..+.|+++..+..+++.|+++.
T Consensus 976 t~~tt~~g~~pl~~~~~~g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~ 1025 (1052)
T 2v50_A 976 TSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYV 1025 (1052)
T ss_dssp HHHHHHTTSHHHHTCCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCChhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 889999999999999999999999999874
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=98.89 E-value=2.5e-09 Score=122.90 Aligned_cols=129 Identities=8% Similarity=-0.030 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhhhhhhheeeecchHHHHHHHHhhccC------------CCCHHHHH
Q 012271 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM------------ELVLETRI 92 (467)
Q Consensus 25 ~l~~~gv~~~~~s~~~s~Gl~~~~Gi~~~~~~~~v~PfLvl~iGvd~~f~l~~~~~~~~~------------~~~~~~ri 92 (467)
..++..++.+.++++.++|.+.++|.+++. ...+...+++|+++||.+++++.+++..+ +.+..+++
T Consensus 902 ~~~l~il~~ip~~~~g~~~~l~l~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai 980 (1054)
T 3ne5_A 902 GEALLIISSVPFALVGGIWLLWWMGFHLSV-ATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEAL 980 (1054)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCCCCHHHHH
Confidence 446667778889999999999999999996 77777778899999999999977766533 56778999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012271 93 SNALVEVGPSITLASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (467)
Q Consensus 93 ~~~l~~~g~si~~tslT~~~~F~~~~~s---~ip~v~~F~i~aa~~v~~~f~~~it~f~a~L~~~ 154 (467)
.++.++.+.+|++|++|+++||+..+++ ..+.++.|++..+.|+++..+.++++.|+++...
T Consensus 981 ~~a~~~~~rpil~t~ltti~g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~ 1045 (1054)
T 3ne5_A 981 YHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLM 1045 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 4888999999999999999999999999988543
No 9
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=42.04 E-value=18 Score=22.27 Aligned_cols=20 Identities=15% Similarity=0.468 Sum_probs=17.3
Q ss_pred ChhHHHHHHHHHHHHHHhhh
Q 012271 392 KQGDYVNSLRAAREFSSRMS 411 (467)
Q Consensus 392 ~~~d~i~al~~~R~ia~~~~ 411 (467)
..+.|.++++.+|+|+.++.
T Consensus 6 ~~daFadA~~RaRQIaAKig 25 (31)
T 2kxh_B 6 VNDAFKDALQRARQIAAKIG 25 (31)
T ss_dssp CSSHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 45789999999999998874
No 10
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=12.07 E-value=90 Score=19.32 Aligned_cols=11 Identities=45% Similarity=1.099 Sum_probs=9.4
Q ss_pred CchHHHHHhhc
Q 012271 269 ASWLDDFLVWT 279 (467)
Q Consensus 269 ~~Wl~~f~~~l 279 (467)
.+||+++.||+
T Consensus 2 ~swL~~iwdWv 12 (31)
T 1r7c_A 2 GSWLRDIWDWI 12 (31)
T ss_dssp CCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 47999999997
Done!