BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012274
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/313 (54%), Positives = 221/313 (70%), Gaps = 9/313 (2%)
Query: 162 ADAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGI 221
A+AVVA DGTG Y+T+ EA+ AAP SK RYVIYVK+G Y+ENV++ K N+M+VGDG+
Sbjct: 3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGM 62
Query: 222 GATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAF 281
AT +TG+ N + G TTFR+AT+A G+GFI +D+ +NTAGP QAVALRV +D S
Sbjct: 63 YATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVI 122
Query: 282 FRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTIT 341
RC ++ YQDTLYAHS RQFYR+ + GT+DFIFGN A V Q C++ +R P Q+ +T
Sbjct: 123 NRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVT 182
Query: 342 AQGRKNPNQNTGFSIQDSYVVATQ---------PTYLGRPWKQYSRTVYMNTYMSGLVQP 392
AQGR +PNQ TG SIQ ++A+ PTYLGRPWK+YSRTV M +Y+ GL+ P
Sbjct: 183 AQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP 242
Query: 393 RGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMA 452
GW EW G+FAL TL+YGE+ N GPGA + RVKWPGYH+I D + A FT + I G +
Sbjct: 243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302
Query: 453 WLPGTGIRFTAGL 465
WL TG+ + GL
Sbjct: 303 WLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/312 (55%), Positives = 221/312 (70%), Gaps = 9/312 (2%)
Query: 163 DAVVALDGTGHYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIG 222
+ VVA DG+G Y+T++EA+ AAP SK RYVI +K GVYRENVD+ KKK NIM +GDG
Sbjct: 8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67
Query: 223 ATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFF 282
+T++T ++N G TTF +ATVA G GF+ARD+TF+NTAG HQAVALRV SD SAF+
Sbjct: 68 STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127
Query: 283 RCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRVPLPLQKVTITA 342
RC + YQD+LY HS RQF+ C I GT+DFIFGN A VLQ+C I++R P QK +TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187
Query: 343 QGRKNPNQNTGFSIQDSYVVATQ---------PTYLGRPWKQYSRTVYMNTYMSGLVQPR 393
QGR +PNQNTG IQ S + AT PTYLGRPWK+YSRTV M + ++ ++ P
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247
Query: 394 GWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDASAARYFTAGRFIDGMAW 453
GW W GNFAL+TL+YGEY+N G GA+ +GRV W G+ +I ++ A+ FT G FI G +W
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
Query: 454 LPGTGIRFTAGL 465
L T F+ GL
Sbjct: 308 LKATTFPFSLGL 319
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 156/335 (46%), Gaps = 63/335 (18%)
Query: 174 YRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGN---- 229
++TI +AI +AP+ S +VI +K GVY E + + + N+ L G+ V+
Sbjct: 18 FKTIADAIASAPAGSTP-FVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAG 74
Query: 230 --RNFMQGWTTFRTATVAVSGKGFIARDMTFRN--------------TAGPQNHQAVALR 273
++ W T ++T+ +S K F A+ +T RN ++ ++ QAVAL
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 274 V--DSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRV 331
V D++ F S+ GYQDTLY R F+ +C I GT+DFIFG+G A+ NC + SR
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 332 PLPLQKVTITA---QGRKNPNQNTGFSIQDSYVVATQPTY------LGRPWKQYS----- 377
++ ++ N NQ G I +S V+ + LGRPW +
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDG 254
Query: 378 ---------RTVYMNTYMSGLVQPRGWLEWYG-NFALNTLWYG-------EYRNYGPGAS 420
+TV++NT M + GW + G + NT+W+ EY++YG GA+
Sbjct: 255 RYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAT 312
Query: 421 LNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLP 455
++ + + DA AA Y + D LP
Sbjct: 313 VSKDRRQ-----LTDAQAAEYTQSKVLGDWTPTLP 342
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 156/335 (46%), Gaps = 63/335 (18%)
Query: 174 YRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGN---- 229
++TI +AI +AP+ S +VI +K GVY E + + + N+ L G+ V+
Sbjct: 18 FKTIADAIASAPAGSTP-FVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAG 74
Query: 230 --RNFMQGWTTFRTATVAVSGKGFIARDMTFRN--------------TAGPQNHQAVALR 273
++ W T ++T+ +S K F A+ +T RN ++ ++ QAVAL
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 274 V--DSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRV 331
V D++ F S+ GYQDTLY R F+ +C I GT+DFIFG+G A+ NC + SR
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 332 PLPLQKVTITA---QGRKNPNQNTGFSIQDSYVVATQPTY------LGRPWKQYS----- 377
++ ++ N NQ G I +S V+ + LGRPW +
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDG 254
Query: 378 ---------RTVYMNTYMSGLVQPRGWLEWYG-NFALNTLWYG-------EYRNYGPGAS 420
+TV++NT M + GW + G + NT+W+ EY++YG GA+
Sbjct: 255 RYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAA 312
Query: 421 LNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLP 455
++ + + DA AA Y + D LP
Sbjct: 313 VSKDRRQ-----LTDAQAAEYTQSKVLGDWTPTLP 342
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 63/335 (18%)
Query: 174 YRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGN---- 229
++TI +AI +AP+ S +VI +K GVY E + + + N+ L G+ V+
Sbjct: 18 FKTIADAIASAPAGSTP-FVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAG 74
Query: 230 --RNFMQGWTTFRTATVAVSGKGFIARDMTFRN--------------TAGPQNHQAVALR 273
++ W T ++T+ +S K F A+ +T RN ++ ++ QAVAL
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 274 V--DSDQSAFFRCSVEGYQDTLYAHSLRQFYRECNIYGTIDFIFGNGAAVLQNCKIYSRV 331
V D++ F S+ GYQ TLY R F+ +C I GT+DFIFG+G A+ NC + SR
Sbjct: 135 VTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 332 PLPLQKVTITA---QGRKNPNQNTGFSIQDSYVVATQPTY------LGRPWKQYS----- 377
++ ++ N NQ G I +S V+ + LGRPW +
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDG 254
Query: 378 ---------RTVYMNTYMSGLVQPRGWLEWYG-NFALNTLWYG-------EYRNYGPGAS 420
+TV++NT M + GW + G + NT+W+ EY++YG GA+
Sbjct: 255 RYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAT 312
Query: 421 LNGRVKWPGYHIIRDASAARYFTAGRFIDGMAWLP 455
++ + + DA AA Y + D LP
Sbjct: 313 VSKDRRQ-----LTDAQAAEYTQSKVLGDWTPTLP 342
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 144/315 (45%), Gaps = 63/315 (20%)
Query: 163 DAVVALDGTG-HYRTITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVG--- 218
+AVV+ G + +I A+ +AP ++I++K GVY E +++ + +++ L G
Sbjct: 32 NAVVSTTPQGDEFSSINAALKSAPK-DDTPFIIFLKNGVYTERLEVAR--SHVTLKGENR 88
Query: 219 DG--IGATVVTGNRNFM-QGWTTFRTATVAVSGKGFIARDMTFRNTAG-PQNH------- 267
DG IGA G N + W T ++TV V+ F A ++T RN P N
Sbjct: 89 DGTVIGANTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDP 148
Query: 268 ------QAVALRV--DSDQSAFFRCSVEGYQDTLYAHS-LRQFYRECNIYGTIDFIFGNG 318
QAVAL + +SD++ F +EGYQDTLY+ + R ++ +C I G +DFIFG+G
Sbjct: 149 TKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSG 208
Query: 319 AAVLQNCKIYSR----VPLPLQKVTITAQGRKNPNQNTGFSIQDSYV-----VATQPTYL 369
V NC I +R + P +T + +P G +S + V L
Sbjct: 209 ITVFDNCNIVARDRSDIEPPYGYITAPSTLTTSP---YGLIFINSRLTKEPGVPANSFAL 265
Query: 370 GRPWKQYS--------------RTVYMNTYMSGLVQPRGWLEWYGN--------FALNTL 407
GRPW + ++V++NT M + GW + G F
Sbjct: 266 GRPWHPTTTFADGRYADPAAIGQSVFINTTMDDHIY--GWDKMSGKDKQGEKIWFYPQDS 323
Query: 408 WYGEYRNYGPGASLN 422
+ E + GPGA++N
Sbjct: 324 RFFEANSQGPGAAIN 338
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 249 KGFIARDMTFRNTAGPQ----NHQAVALRVDSDQSAFFRCSVEGYQDTLYA-HSLRQFYR 303
G +++T NT G NH AVALR D DQ ++ G Q+T + +S Q
Sbjct: 201 NGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRL 260
Query: 304 ECN-----------IYGTIDFIFGNGAAVLQNCK 326
E N I G +D + G GA V N +
Sbjct: 261 ETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTE 294
>pdb|1XQ8|A Chain A, Human Micelle-Bound Alpha-Synuclein
pdb|2KKW|A Chain A, Slas-Micelle Bound Alpha-Synuclein
Length = 140
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 221 IGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAG-PQNHQAVALRVDSDQS 279
+G VVTG Q T A + GF+ +D +N G PQ + VD D
Sbjct: 66 VGGAVVTGVTAVAQ--KTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNE 123
Query: 280 AFFRCSVEGYQD 291
A+ S EGYQD
Sbjct: 124 AYEMPSEEGYQD 135
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDF|B Chain B, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDG|A Chain A, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 35 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 72
>pdb|3CMR|A Chain A, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
pdb|3CMR|B Chain B, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
Length = 449
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 31 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|3BDG|B Chain B, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 35 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 72
>pdb|3DYC|A Chain A, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
pdb|3DYC|B Chain B, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
Length = 449
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|3BDH|A Chain A, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
pdb|3BDH|B Chain B, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
Length = 458
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 35 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 72
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c)
pdb|1ELY|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102c)
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h)
pdb|1ANJ|B Chain B, Alkaline Phosphatase (K328h)
Length = 446
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 31 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|1AJD|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJD|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a)
pdb|1ELX|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102a)
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
pdb|1Y7A|B Chain B, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 31 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|3DPC|A Chain A, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
pdb|3DPC|B Chain B, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
Length = 455
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q)
pdb|1HQA|B Chain B, Alkaline Phosphatase (H412q)
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED8|B Chain B, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|A Chain A, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|B Chain B, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1EW8|A Chain A, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW8|B Chain B, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW9|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW9|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1Y6V|A Chain A, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|1Y6V|B Chain B, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|3TG0|A Chain A, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|B Chain B, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|C Chain C, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|D Chain D, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate
pdb|1B8J|B Chain B, Alkaline Phosphatase Complexed With Vanadate
pdb|2GA3|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
pdb|2GA3|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g)
pdb|1ELZ|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102g)
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q
pdb|1HJK|B Chain B, Alkaline Phosphatase Mutant H331q
Length = 449
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|2G9Y|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
pdb|2G9Y|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
Length = 449
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|B Chain B, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|B Chain B, Alkaline Phosphatase Mutant (H412n)
Length = 449
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ALH|A Chain A, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
pdb|1ALH|B Chain B, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
Length = 446
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 31 RDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|1ALK|A Chain A, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
pdb|1ALK|B Chain B, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
Length = 449
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R ++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1KHJ|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHJ|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHK|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHK|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHL|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHL|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHN|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
pdb|1KHN|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
Length = 449
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R ++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1KH4|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH4|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH5|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH5|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH9|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
pdb|1KH9|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
Length = 449
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R ++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
pdb|1KH7|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
Length = 449
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R ++ K K I+L+GDG+G + +T RN+ +G F
Sbjct: 34 RNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1URB|A Chain A, Alkaline Phosphatase (N51mg)
pdb|1URB|B Chain B, Alkaline Phosphatase (N51mg)
pdb|1URA|A Chain A, Alkaline Phosphatase (D51zn)
pdb|1URA|B Chain B, Alkaline Phosphatase (D51zn)
Length = 446
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 202 RENVDMKKKKTNIMLVGDGIGATVVTGNRNFMQGWTTF 239
R+++ K K I+L+G+G+G + +T RN+ +G F
Sbjct: 31 RDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGF 68
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
pdb|3HL4|B Chain B, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
Length = 236
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 145 MTEGDKGLMDMKPTRMHADAVVALDGTGHYRTITEAINAAPS 186
M E +G +P R++AD + L +GH R + +A N P+
Sbjct: 64 MEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPN 105
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 176 TITEAINAAPSYSKRRYVIYVKKGVYRENVDMKKKKTNIMLVGDGIGATVVTGNR 230
TI E I A SY + RY +K E++ +K NI+L G+G G T+ G R
Sbjct: 114 TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL-GEG-GITLSGGQR 166
>pdb|1OSP|H Chain H, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
Length = 218
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 377 SRTVYMNTYMSGLVQPRGWLEWYGNFALNTLWYGEYRNYGPGASLNGRVKWPGYHIIRDA 436
S+T+ + ++G G+ +W F N L + Y YG G N +K P I RD
Sbjct: 15 SQTLSLTCSVTGEPITSGFWDWIRKFPGNKLEFMGYIRYGGGTYYNPSLKSP-ISITRDT 73
Query: 437 SAARYF 442
S Y+
Sbjct: 74 SKNHYY 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,429,942
Number of Sequences: 62578
Number of extensions: 627538
Number of successful extensions: 1309
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 38
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)