BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012275
         (467 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E25|A Chain A, The Crystal Structure Of The T109s Mutant Of E. Coli
           Dihydroorotase Complexed With An Inhibitor
           5-fluoroorotate
 pdb|2Z27|A Chain A, Thr109ser Dihydroorotase From E. Coli
 pdb|2Z27|B Chain B, Thr109ser Dihydroorotase From E. Coli
          Length = 347

 Score = 33.1 bits (74), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 29/148 (19%)

Query: 226 WSMHVIKNVLLVTISRVRYIHFAYG------------ADMETEIAFRDTIKYLMGSVYIG 273
           W +H+    +L T+  V Y    YG              +E  +A+R  I   + +V  G
Sbjct: 15  WHLHLRDGDMLKTV--VPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRI---LDAVPAG 69

Query: 274 SVFVPIFGSIWGSARTINAIAGERDEFLFSCADCYSAVASTLAAHGNRWGFVHVGVYNKG 333
             F P+       +   N +    +E +F+ A  Y A AST ++HG              
Sbjct: 70  HDFTPLMTCYLTDSLDPNELERGFNEGVFTAAXLYPANASTNSSHG------------VT 117

Query: 334 FIQASVDTWEMFKRAGMETLINSDLTGA 361
            + A +   E  ++ GM  L++ ++T A
Sbjct: 118 SVDAIMPVLERMEKIGMPLLVHGEVTHA 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,475,944
Number of Sequences: 62578
Number of extensions: 392480
Number of successful extensions: 871
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 1
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)