Query 012275
Match_columns 467
No_of_seqs 211 out of 604
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 00:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 8.5E-65 1.8E-69 540.4 34.3 359 84-446 151-562 (577)
2 PF04515 Choline_transpo: Plas 100.0 4.9E-59 1.1E-63 474.2 23.7 294 140-434 2-334 (334)
3 PF06570 DUF1129: Protein of u 83.0 28 0.00061 33.1 12.9 23 141-163 180-202 (206)
4 PF11190 DUF2976: Protein of u 68.0 37 0.00079 28.2 7.8 77 23-103 3-81 (87)
5 KOG1362 Choline transporter-li 60.4 1.8E+02 0.0038 32.5 13.7 38 74-112 170-207 (577)
6 KOG4050 Glutamate transporter 43.5 2.7E+02 0.0059 25.8 12.2 63 38-110 41-104 (188)
7 COG4536 CorB Putative Mg2+ and 36.6 5.5E+02 0.012 27.3 14.0 143 304-452 14-182 (423)
8 PF10110 GPDPase_memb: Membran 36.1 91 0.002 27.9 5.8 32 321-352 104-135 (149)
9 TIGR02220 phg_TIGR02220 phage 35.4 29 0.00063 28.1 2.1 31 313-350 2-32 (77)
10 PF00892 EamA: EamA-like trans 34.7 2.5E+02 0.0055 22.9 9.9 59 92-151 64-123 (126)
11 COG2211 MelB Na+/melibiose sym 29.0 6.2E+02 0.013 27.5 11.5 32 84-115 276-308 (467)
12 cd03036 ArsC_like Arsenate Red 28.3 34 0.00075 29.1 1.6 25 328-352 2-26 (111)
13 KOG2611 Neurochondrin/leucine- 26.9 61 0.0013 35.2 3.3 21 411-431 78-98 (698)
14 TIGR01478 STEVOR variant surfa 25.6 79 0.0017 31.9 3.7 22 140-161 264-285 (295)
15 PTZ00370 STEVOR; Provisional 25.5 76 0.0016 32.1 3.5 23 140-162 260-282 (296)
16 PF06781 UPF0233: Uncharacteri 25.3 2.9E+02 0.0063 22.9 6.4 19 38-56 26-44 (87)
17 TIGR03745 conj_TIGR03745 integ 25.2 2.3E+02 0.0049 24.3 5.8 54 38-95 36-89 (104)
18 cd03027 GRX_DEP Glutaredoxin ( 24.3 49 0.0011 25.5 1.6 25 328-352 4-28 (73)
19 TIGR02189 GlrX-like_plant Glut 23.8 47 0.001 27.7 1.6 25 327-351 10-34 (99)
20 PRK10532 threonine and homoser 22.9 7.4E+02 0.016 24.4 10.8 60 90-151 216-278 (293)
21 TIGR00893 2A0114 d-galactonate 22.9 7.1E+02 0.015 24.2 12.9 20 90-109 262-281 (399)
22 PRK10649 hypothetical protein; 22.8 4.4E+02 0.0096 29.3 9.4 31 90-120 47-77 (577)
23 cd02977 ArsC_family Arsenate R 22.6 52 0.0011 27.4 1.6 25 328-352 2-26 (105)
24 cd03418 GRX_GRXb_1_3_like Glut 20.8 64 0.0014 24.6 1.7 25 328-352 3-27 (75)
25 PRK01655 spxA transcriptional 20.7 60 0.0013 28.6 1.7 26 327-352 2-27 (131)
26 PRK10774 cell division protein 20.5 3.7E+02 0.008 28.5 7.8 27 18-46 13-39 (404)
27 TIGR02181 GRX_bact Glutaredoxi 20.3 53 0.0012 25.5 1.1 25 328-352 2-26 (79)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.5e-65 Score=540.41 Aligned_cols=359 Identities=23% Similarity=0.329 Sum_probs=293.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------------hHH
Q 012275 84 PLLASAASAGILSLAWQWMTQSKPSKAMRICFWLGPLMTCAFGILLLVINSAA------------------------SLS 139 (467)
Q Consensus 84 ~ll~~~~ia~vls~~~l~llr~~~~~~I~~~l~~~~i~~l~~~i~~~~~~~~~------------------------~~~ 139 (467)
.++..+.++++++.+++.++|++++.++|...++.+.. ++.+++..+..+.. ...
T Consensus 151 ~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~-l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ 229 (577)
T KOG1362|consen 151 TILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVG-LLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLDA 229 (577)
T ss_pred HHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHHH
Confidence 47778899999999999999999999988886654443 33344332221110 234
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCCcchHHH---HHHHHHHHHHHHHHHHHc-----cC-----c-
Q 012275 140 TGAVAIIAGVIQSIYTCWVNPRFEYAGKILSVSAAFPPARTAILV---TLSIILSAVYSSFLVSGI-----GG-----A- 205 (467)
Q Consensus 140 ~giv~~i~aii~~l~~~~~~~RI~~a~~iLk~a~~~~~~~~~~l~---iv~~~~~~~~~~~wv~~~-----~G-----~- 205 (467)
.||++.++.++.+++.+.+|+||+++++++|+++|++ .+.|.+. ....++...|.++|+.+. +| .
T Consensus 230 ~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i-~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~gg~ 308 (577)
T KOG1362|consen 230 VGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAI-GSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEGGC 308 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCc
Confidence 7999999999999999999999999999999999986 6666554 344556667777777642 23 1
Q ss_pred --cccCcchhHHHHHHHHHH-HHHHHHHHHhcccceeeeEEE-EecccCC----CccHHHHHHHHHhhccchhhhhhhHH
Q 012275 206 --TAIGTTLDILFIAVILLS-LAWSMHVIKNVLLVTISRVRY-IHFAYGA----DMETEIAFRDTIKYLMGSVYIGSVFV 277 (467)
Q Consensus 206 --~~~~~~~~~~~~~~~lfs-~~Wt~~vi~nv~~~tvAg~v~-~yf~~~~----~~p~~~s~~ra~t~sfGSIcfGSLiv 277 (467)
...++..+. +.+++++. ++|++||++|++|+++||+++ |||.+++ ++|+..|++|+++||+||||+|||++
T Consensus 309 ~~~~~~~~~~~-~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yhlGSi~~GSliv 387 (577)
T KOG1362|consen 309 ACTYSGGSLRI-LFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYHLGSICFGSLLV 387 (577)
T ss_pred eeeccCCcchh-HhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHhccchhhhhhHH
Confidence 123333433 44555555 999999999999999999999 7777776 36899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCcc----hhHHHHHHhHHHHHHHHHHhcchhHHHhHhccCcchhhhHHHHHHHHHhccccee
Q 012275 278 PIFGSIWGSARTINAIAGERD----EFLFSCADCYSAVASTLAAHGNRWGFVHVGVYNKGFIQASVDTWEMFKRAGMETL 353 (467)
Q Consensus 278 aiI~~lR~il~~l~~~~~~~~----~~l~~~~~C~l~~~e~~v~y~Nr~Ayv~iAiyG~~F~~AAk~~~~L~~~~g~~al 353 (467)
++|+++|.++|+++++.++.+ ++++||++||+||+||+++|+|||||+++|+|||+||+||||||+|+++| +..+
T Consensus 388 ~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v~~v 466 (577)
T KOG1362|consen 388 ALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-VLRV 466 (577)
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-HHHH
Confidence 999999999999997744332 59999999999999999999999999999999999999999999999999 8888
Q ss_pred eccchhHHHHHHHhHHHHHHHHHHHHHHHhhhccc--chhhHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHhccCCCC
Q 012275 354 INSDLTGAFCFFSGVAGGAVSALVGGTWALAVHKS--YATEVSIYAFLIG-YFMFRTATAWPLACVSAYYVAYAENPLHP 430 (467)
Q Consensus 354 v~d~l~~~vL~lg~~~vg~~~~l~~~~~l~~~~~~--~~~~v~~~~flig-~~i~~if~sv~~s~VdTifvCfaeDpe~~ 430 (467)
++.|.++.++++++.+.+.+++.++..|....+++ ++..+.++++++| |+|+++|+++++|+|||+|+||+||||.+
T Consensus 467 v~~d~vs~~llflgk~l~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~e~n 546 (577)
T KOG1362|consen 467 VDVDLVSDFLLFLGKLLGAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDPESN 546 (577)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecHhhc
Confidence 99999988777776777777777777777777888 5667778889999 99999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHhh
Q 012275 431 RFDSTIPARIQELQRY 446 (467)
Q Consensus 431 ~~~~~~p~~~~~l~~~ 446 (467)
+.+.+.|.+.+|....
T Consensus 547 ~gs~~~p~~~~~~l~~ 562 (577)
T KOG1362|consen 547 DGSPEKPQFMSEQLLE 562 (577)
T ss_pred CCCCCcceeeeHHHHH
Confidence 9887778777654443
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=4.9e-59 Score=474.17 Aligned_cols=294 Identities=20% Similarity=0.340 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCCcchHHHH---HHHHHHHHHHHHHHHHc-----cCccc----
Q 012275 140 TGAVAIIAGVIQSIYTCWVNPRFEYAGKILSVSAAFPPARTAILVT---LSIILSAVYSSFLVSGI-----GGATA---- 207 (467)
Q Consensus 140 ~giv~~i~aii~~l~~~~~~~RI~~a~~iLk~a~~~~~~~~~~l~i---v~~~~~~~~~~~wv~~~-----~G~~~---- 207 (467)
.++++++++++.++++++.||||+++++++|+|++++ +++|.+.+ +..++.+.|.++|+... .|...
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l-~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~ 80 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKAL-RSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPC 80 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 4677888888889999999999999999999999986 78888753 44567777888887653 12110
Q ss_pred --------------cCcchhHHHHHHHHHHHHHHHHHHHhcccceeeeEEE-EecccCC-C---ccHHHHHHHHHhhccc
Q 012275 208 --------------IGTTLDILFIAVILLSLAWSMHVIKNVLLVTISRVRY-IHFAYGA-D---METEIAFRDTIKYLMG 268 (467)
Q Consensus 208 --------------~~~~~~~~~~~~~lfs~~Wt~~vi~nv~~~tvAg~v~-~yf~~~~-~---~p~~~s~~ra~t~sfG 268 (467)
..+....++.+|++|+++|+++|++|+.|+++||+++ |||.+++ + .|+.+|++|+++||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~G 160 (334)
T PF04515_consen 81 NLPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFG 160 (334)
T ss_pred CCCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHH
Confidence 0012345689999999999999999999999999998 6776665 3 4899999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhCCc----chhHHHHHHhHHHHHHHHHHhcchhHHHhHhccCcchhhhHHHHHHH
Q 012275 269 SVYIGSVFVPIFGSIWGSARTINAIAGER----DEFLFSCADCYSAVASTLAAHGNRWGFVHVGVYNKGFIQASVDTWEM 344 (467)
Q Consensus 269 SIcfGSLivaiI~~lR~il~~l~~~~~~~----~~~l~~~~~C~l~~~e~~v~y~Nr~Ayv~iAiyG~~F~~AAk~~~~L 344 (467)
|+|+|||++++++++|.++++++++.++. .+++.||++||++|+|+++||+|||||+|+|+||++||+||||+++|
T Consensus 161 Si~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L 240 (334)
T PF04515_consen 161 SICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFEL 240 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 99999999999999999999999876543 25789999999999999999999999999999999999999999999
Q ss_pred HHhcccceeeccchhHHHHHHHhHHHHHHHHHHHHHHHhhh----cccchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 012275 345 FKRAGMETLINSDLTGAFCFFSGVAGGAVSALVGGTWALAV----HKSYATEVSIYAFLIGYFMFRTATAWPLACVSAYY 420 (467)
Q Consensus 345 ~~~~g~~alv~d~l~~~vL~lg~~~vg~~~~l~~~~~l~~~----~~~~~~~v~~~~flig~~i~~if~sv~~s~VdTif 420 (467)
++||+.++..+|++++.++++|+++++..+++++|.++... +.++...+.++++++||.+++++++++++++||+|
T Consensus 241 ~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti~ 320 (334)
T PF04515_consen 241 IKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTIF 320 (334)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988742 23345567789999999999999999999999999
Q ss_pred HHHhccCCCCCCCC
Q 012275 421 VAYAENPLHPRFDS 434 (467)
Q Consensus 421 vCfaeDpe~~~~~~ 434 (467)
+||+||||.+++|+
T Consensus 321 vc~~~d~e~~~~~~ 334 (334)
T PF04515_consen 321 VCYAEDPEMNKNDG 334 (334)
T ss_pred HHHHHHhhhhhcCC
Confidence 99999999988764
No 3
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=83.00 E-value=28 Score=33.12 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhccchHH
Q 012275 141 GAVAIIAGVIQSIYTCWVNPRFE 163 (467)
Q Consensus 141 giv~~i~aii~~l~~~~~~~RI~ 163 (467)
..+.++++++.....++++||-+
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444566666666667777754
No 4
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=67.97 E-value=37 Score=28.17 Aligned_cols=77 Identities=16% Similarity=0.048 Sum_probs=35.7
Q ss_pred ccccCCCccccccc--chhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcCCCCCchHHHHHHHHHHHHHHHHHH
Q 012275 23 TVQESSSPRIEATV--AGQFLRKLFQFLFYLHFILIAVLTIFLAIRGVVLSGKHHFQPKKWYPPLLASAASAGILSLAWQ 100 (467)
Q Consensus 23 ~~~~~~~~~~~~~~--~~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ia~vls~~~l 100 (467)
|+|+|+..+..... .+-|-.|....+=++-..+.|+.++--.+..+++-+ ++++.+..+...++++.++-.+-+
T Consensus 3 ~~e~Ps~g~~~~~~~~i~~y~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir----~gK~~W~~fg~~~vVGvvLlv~vi 78 (87)
T PF11190_consen 3 TVEPPSSGGGGGIMETIKGYAKDGVLLLGLVLAAAAFIVVAKAAISTYNEIR----DGKKTWGDFGATVVVGVVLLVFVI 78 (87)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcccHHHhhhHHHHHHHHHHHHH
Confidence 44555544222222 255555555444444444444444433343443322 245555556666666665555444
Q ss_pred HHH
Q 012275 101 WMT 103 (467)
Q Consensus 101 ~ll 103 (467)
+++
T Consensus 79 wLl 81 (87)
T PF11190_consen 79 WLL 81 (87)
T ss_pred HHH
Confidence 444
No 5
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=60.36 E-value=1.8e+02 Score=32.53 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=24.7
Q ss_pred CcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHchhhHHH
Q 012275 74 HHFQPKKWYPPLLASAASAGILSLAWQWMTQSKPSKAMR 112 (467)
Q Consensus 74 ~~~~~~~~~~~ll~~~~ia~vls~~~l~llr~~~~~~I~ 112 (467)
.+++.. +.++++...++...++..|...+.+..-....
T Consensus 170 lr~~~~-~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~ 207 (577)
T KOG1362|consen 170 LRFLAA-ILPWILIILVLVGLLSGIWFCWFLYAILRNTK 207 (577)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 344444 55566666777777788888877776655443
No 6
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=43.54 E-value=2.7e+02 Score=25.82 Aligned_cols=63 Identities=10% Similarity=0.247 Sum_probs=36.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHchhhH
Q 012275 38 GQFLRKLFQFLFYLHFILIAVLTIFLAIRGVVLSGKHHFQPKKWYPPLLASAASAGILS-LAWQWMTQSKPSKA 110 (467)
Q Consensus 38 ~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ia~vls-~~~l~llr~~~~~~ 110 (467)
+|++|+.-.=+.+-|.==+......+.++++.+.. -.++...+++++++ ++|-.-.+-.-|.+
T Consensus 41 ~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~----------~iilglivvvlvi~~liwa~~~~a~~krm 104 (188)
T KOG4050|consen 41 KKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQ----------DIILGLIVVVLVIGTLIWAASADANIKRM 104 (188)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHH----------HHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 68888887666555432221222334566654311 14666677777777 78887666555544
No 7
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=36.56 E-value=5.5e+02 Score=27.27 Aligned_cols=143 Identities=8% Similarity=0.068 Sum_probs=84.8
Q ss_pred HHHhHHHHHHHHHHhcchhHHHhHhccCcchhhhHHHHHHHHHhcc--cc-eeeccchhHHHH----------HHHhHHH
Q 012275 304 CADCYSAVASTLAAHGNRWGFVHVGVYNKGFIQASVDTWEMFKRAG--ME-TLINSDLTGAFC----------FFSGVAG 370 (467)
Q Consensus 304 ~~~C~l~~~e~~v~y~Nr~Ayv~iAiyG~~F~~AAk~~~~L~~~~g--~~-alv~d~l~~~vL----------~lg~~~v 370 (467)
+++..+++-|.-+.-.|||=.=+-|-.|. +.||++-+|++++. +. -++-+++++... ..|...+
T Consensus 14 ~iSAfFSgSETal~a~nr~Rlr~la~~G~---~~Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~~irl~Gd~Gv 90 (423)
T COG4536 14 IISAFFSGSETALTALNRYRLRHLAKQGN---RGAKRVEKLLEKPDRLIGTILIGNNLVNILASALATILGIRLYGDAGV 90 (423)
T ss_pred HHHHHhcccHHHHhhccHHHHHHHHHccc---hhhHHHHHHhcCchheeeeeeecccHHHHHHHHHHHHHHHHHhccchH
Confidence 44556788899999999999999999996 68999999998742 22 245556655421 2455566
Q ss_pred HHHHHHHHHHHHhhh----------cccc-hhhHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHhccCCCCCCCCCCc
Q 012275 371 GAVSALVGGTWALAV----------HKSY-ATEVSIYAFLIG--YFMFRTATAWPLACVSAYYVAYAENPLHPRFDSTIP 437 (467)
Q Consensus 371 g~~~~l~~~~~l~~~----------~~~~-~~~v~~~~flig--~~i~~if~sv~~s~VdTifvCfaeDpe~~~~~~~~p 437 (467)
+..++.++++.+.+. .|+. +.+ .++.+. .-+..-....+...++.+.--+...+.....+..=+
T Consensus 91 aIAt~~mT~vilvFaEVlPKt~Aa~~perva~~---~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~ 167 (423)
T COG4536 91 AIATGVLTFVILVFAEVLPKTIAALYPERVALP---SSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSK 167 (423)
T ss_pred HHHHHHHHHHHHHHHHhcchHHhhhChhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCH
Confidence 777888888766432 2221 111 111111 122333444556666667767777766532211225
Q ss_pred HHHHHHHhhcccccc
Q 012275 438 ARIQELQRYQNEQIA 452 (467)
Q Consensus 438 ~~~~~l~~~~~~~~~ 452 (467)
|.++......+++..
T Consensus 168 EElR~~v~~~~~e~~ 182 (423)
T COG4536 168 EELRTAVNESGSEGS 182 (423)
T ss_pred HHHHHHHHHhhcccc
Confidence 666655555555543
No 8
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=36.08 E-value=91 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=27.7
Q ss_pred hhHHHhHhccCcchhhhHHHHHHHHHhcccce
Q 012275 321 RWGFVHVGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 321 r~Ayv~iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-++.-.+.+.++++.+|-|++|++.|.|.++.
T Consensus 104 if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 104 IFVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 45677888999999999999999999987753
No 9
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=35.37 E-value=29 Score=28.09 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=27.0
Q ss_pred HHHHHhcchhHHHhHhccCcchhhhHHHHHHHHHhccc
Q 012275 313 STLAAHGNRWGFVHVGVYNKGFIQASVDTWEMFKRAGM 350 (467)
Q Consensus 313 e~~v~y~Nr~Ayv~iAiyG~~F~~AAk~~~~L~~~~g~ 350 (467)
+.+++|+|+.+ |++|-.+++.+..+++.|--
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~~ 32 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARWN 32 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHHH
Confidence 56889999987 99999999999999998743
No 10
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=34.73 E-value=2.5e+02 Score=22.85 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Q 012275 92 AGILSLAWQWMTQSKPSKAMRICFWLGPLMTCAFGILLLVINS-AASLSTGAVAIIAGVIQ 151 (467)
Q Consensus 92 a~vls~~~l~llr~~~~~~I~~~l~~~~i~~l~~~i~~~~~~~-~~~~~~giv~~i~aii~ 151 (467)
..+-...|...+++.+-...-...-..++.+...+... .... ......|++..+.+++.
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~-~~e~~~~~~~~g~~l~~~g~~l 123 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLF-LGERPSWRQIIGIILIIIGVVL 123 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHH
Confidence 34445678888888877666666666777766666322 2211 12345666655555443
No 11
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=29.02 E-value=6.2e+02 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHchhhHHHHHH
Q 012275 84 PLLASAASAGIL-SLAWQWMTQSKPSKAMRICF 115 (467)
Q Consensus 84 ~ll~~~~ia~vl-s~~~l~llr~~~~~~I~~~l 115 (467)
.++.+...+.+. ..+|-.+.+++-|.-++...
T Consensus 276 ~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~ 308 (467)
T COG2211 276 LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG 308 (467)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHH
Confidence 455555555555 78999999999887665543
No 12
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=28.29 E-value=34 Score=29.12 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=22.8
Q ss_pred hccCcchhhhHHHHHHHHHhcccce
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-+||++-|..+|+|.++++++|++-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDY 26 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCce
Confidence 4899999999999999999999864
No 13
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=26.92 E-value=61 Score=35.20 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHhccCCCCC
Q 012275 411 WPLACVSAYYVAYAENPLHPR 431 (467)
Q Consensus 411 v~~s~VdTifvCfaeDpe~~~ 431 (467)
|+.+.--|++-|||.|||...
T Consensus 78 Vy~~i~itvLacFC~~pElAs 98 (698)
T KOG2611|consen 78 VYLQISITVLACFCRVPELAS 98 (698)
T ss_pred HHHHHHHHHHHHHhCChhhcc
Confidence 444555588889999999854
No 14
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.60 E-value=79 Score=31.89 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhccch
Q 012275 140 TGAVAIIAGVIQSIYTCWVNPR 161 (467)
Q Consensus 140 ~giv~~i~aii~~l~~~~~~~R 161 (467)
++.++++++++.+++++|+++|
T Consensus 264 aalvllil~vvliiLYiWlyrr 285 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWLYRR 285 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677787777777777666
No 15
>PTZ00370 STEVOR; Provisional
Probab=25.49 E-value=76 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhccchH
Q 012275 140 TGAVAIIAGVIQSIYTCWVNPRF 162 (467)
Q Consensus 140 ~giv~~i~aii~~l~~~~~~~RI 162 (467)
++.++++++++.+++++|+++|=
T Consensus 260 aalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566777877777777776663
No 16
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=25.34 E-value=2.9e+02 Score=22.91 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=10.2
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 012275 38 GQFLRKLFQFLFYLHFILI 56 (467)
Q Consensus 38 ~~~~~~~~~~lF~~~~~~~ 56 (467)
.+-+..|+..+++.-++++
T Consensus 26 ~~~sp~W~~p~m~~lmllG 44 (87)
T PF06781_consen 26 AKPSPRWYAPLMLGLMLLG 44 (87)
T ss_pred CCCCCccHHHHHHHHHHHH
Confidence 3455556666555555544
No 17
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=25.18 E-value=2.3e+02 Score=24.33 Aligned_cols=54 Identities=13% Similarity=-0.050 Sum_probs=27.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcCCCCCchHHHHHHHHHHHHH
Q 012275 38 GQFLRKLFQFLFYLHFILIAVLTIFLAIRGVVLSGKHHFQPKKWYPPLLASAASAGIL 95 (467)
Q Consensus 38 ~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ia~vl 95 (467)
+-|-.|...++=++-..++|+.|+--++..|++-+ ++++.+..+..-.+++.++
T Consensus 36 k~Y~~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei~----~Gk~~W~~fg~~v~VGviL 89 (104)
T TIGR03745 36 KNYGYDGGILLGLLIAAIAFIGVAYHALGTYHEIR----TGKATWGDFGATVVVGAIL 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cchhhHHhCcchhhhHhHH
Confidence 56666666665555555565655554444444322 3344444444444444443
No 18
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.26 E-value=49 Score=25.46 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=22.1
Q ss_pred hccCcchhhhHHHHHHHHHhcccce
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-+|+++-|+.++++.+++.++|+.-
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~~ 28 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPY 28 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCce
Confidence 4799999999999999999998764
No 19
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=23.83 E-value=47 Score=27.70 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=21.8
Q ss_pred HhccCcchhhhHHHHHHHHHhcccc
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGME 351 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~ 351 (467)
+-+|++++|+-++++-+++.+++.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~ 34 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVN 34 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4589999999999999999998874
No 20
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=22.93 E-value=7.4e+02 Score=24.42 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHHHHH-HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH
Q 012275 90 ASAGILSL-AWQWMTQSKPSKAMRICFWLGPLMTCAFGILLLVINSA--ASLSTGAVAIIAGVIQ 151 (467)
Q Consensus 90 ~ia~vls~-~~l~llr~~~~~~I~~~l~~~~i~~l~~~i~~~~~~~~--~~~~~giv~~i~aii~ 151 (467)
+++.++++ +|...+|+.+..-+-....+.++.+...|... .+.. .....|....+.+++.
T Consensus 216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~--lgE~~~~~~~iG~~lIl~~~~~ 278 (293)
T PRK10532 216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF--LGETLTLIQWLALGAIIAASMG 278 (293)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHH
Confidence 44444454 67777777777666666666777766666432 2221 1334555555554333
No 21
>TIGR00893 2A0114 d-galactonate transporter.
Probab=22.93 E-value=7.1e+02 Score=24.21 Aligned_cols=20 Identities=5% Similarity=-0.198 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHchhh
Q 012275 90 ASAGILSLAWQWMTQSKPSK 109 (467)
Q Consensus 90 ~ia~vls~~~l~llr~~~~~ 109 (467)
+.+++.+.++-.+.+.+.+.
T Consensus 262 ~~~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 262 IVGFIGMILGGRLSDLLLRR 281 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33444444544555544443
No 22
>PRK10649 hypothetical protein; Provisional
Probab=22.79 E-value=4.4e+02 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHchhhHHHHHHHHHHH
Q 012275 90 ASAGILSLAWQWMTQSKPSKAMRICFWLGPL 120 (467)
Q Consensus 90 ~ia~vls~~~l~llr~~~~~~I~~~l~~~~i 120 (467)
-=+++++.+|+..+-.+|+..=++..++.++
T Consensus 47 ~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~v 77 (577)
T PRK10649 47 RDALLFSSLWLIPVFLFPRRIRIIAAVIGVV 77 (577)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456778888888888888654444444444
No 23
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=22.63 E-value=52 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.7
Q ss_pred hccCcchhhhHHHHHHHHHhcccce
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-+||++-|..++++-++++++|++-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEY 26 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCc
Confidence 4899999999999999999999764
No 24
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=20.84 E-value=64 Score=24.55 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=21.9
Q ss_pred hccCcchhhhHHHHHHHHHhcccce
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-+|+++.|+-++++-+++++++++-
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~~~i~~ 27 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDKKGVDY 27 (75)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCcE
Confidence 4899999999999999999988754
No 25
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=20.65 E-value=60 Score=28.63 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=23.5
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
+-+||++-|+.++++-+.+.++|++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~ 27 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPF 27 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 45899999999999999999999864
No 26
>PRK10774 cell division protein FtsW; Provisional
Probab=20.54 E-value=3.7e+02 Score=28.55 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=15.8
Q ss_pred cccccccccCCCcccccccchhhhhhhHH
Q 012275 18 STATNTVQESSSPRIEATVAGQFLRKLFQ 46 (467)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (467)
|||+| +.|+.-.+..|.+++..|....
T Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~d~~ll 39 (404)
T PRK10774 13 STALK--GWVMGSREKDTDSLIMYDRTLL 39 (404)
T ss_pred hhhcc--cCCccccccccccccccCHHHH
Confidence 56666 5555555555557777776533
No 27
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=20.26 E-value=53 Score=25.53 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.0
Q ss_pred hccCcchhhhHHHHHHHHHhcccce
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-+|+++.|+.++++.++++++|++-
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~~ 26 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVTF 26 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCCc
Confidence 4799999999999999999988754
Done!