Query 012275
Match_columns 467
No_of_seqs 211 out of 604
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um7_A Potassium channel subfa 26.2 47 0.0016 32.5 3.8 15 21-35 2-16 (309)
2 2lqo_A Putative glutaredoxin R 24.7 25 0.00086 27.8 1.3 26 327-352 6-31 (92)
3 3f0i_A Arsenate reductase; str 22.2 39 0.0013 27.9 2.0 28 326-353 5-32 (119)
4 3rdw_A Putative arsenate reduc 20.7 41 0.0014 27.9 1.9 26 327-352 7-32 (121)
5 3gkx_A Putative ARSC family re 18.7 43 0.0015 27.8 1.5 27 327-353 6-32 (120)
6 3l78_A Regulatory protein SPX; 17.9 38 0.0013 28.0 1.0 26 327-352 2-27 (120)
7 1s3c_A Arsenate reductase; ARS 16.9 59 0.002 27.7 2.0 26 327-352 4-29 (141)
8 3fz4_A Putative arsenate reduc 16.8 56 0.0019 27.0 1.8 27 326-352 4-30 (120)
9 2i68_A Protein EMRE; transmemb 16.0 2.9E+02 0.0099 23.3 6.2 67 83-151 31-100 (137)
10 1rw1_A Conserved hypothetical 16.0 63 0.0022 26.2 1.9 26 327-352 2-27 (114)
No 1
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=26.17 E-value=47 Score=32.52 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=0.0
Q ss_pred ccccccCCCcccccc
Q 012275 21 TNTVQESSSPRIEAT 35 (467)
Q Consensus 21 ~~~~~~~~~~~~~~~ 35 (467)
|..+||||.||.|+.
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (309)
T 3um7_A 2 TTAPQEPPARPLQAG 16 (309)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCCCC
Confidence 344667666555543
No 2
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=24.66 E-value=25 Score=27.78 Aligned_cols=26 Identities=4% Similarity=0.114 Sum_probs=22.7
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
|-+|+++.|+-++++-++++++|++-
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y 31 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAY 31 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCC
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCce
Confidence 45899999999999999999998864
No 3
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=22.18 E-value=39 Score=27.94 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.7
Q ss_pred hHhccCcchhhhHHHHHHHHHhccccee
Q 012275 326 HVGVYNKGFIQASVDTWEMFKRAGMETL 353 (467)
Q Consensus 326 ~iAiyG~~F~~AAk~~~~L~~~~g~~al 353 (467)
.+-+||++-|..+|++.++++++|++--
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~ 32 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAPQ 32 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCCE
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceE
Confidence 4678999999999999999999998643
No 4
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=20.70 E-value=41 Score=27.89 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.7
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
+-+||++-|..+|++-++++++|++-
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~ 32 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITP 32 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 56899999999999999999999764
No 5
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=18.75 E-value=43 Score=27.76 Aligned_cols=27 Identities=4% Similarity=-0.123 Sum_probs=24.1
Q ss_pred HhccCcchhhhHHHHHHHHHhccccee
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMETL 353 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~al 353 (467)
+-+||++-|..+|++-++++++|++--
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~~ 32 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEYT 32 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCChHHHHHHHHHHHcCCceE
Confidence 568999999999999999999997643
No 6
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=17.85 E-value=38 Score=27.97 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=23.5
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
+-+||++-|..++++-++++++|++-
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~ 27 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVVF 27 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 45899999999999999999999865
No 7
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=16.87 E-value=59 Score=27.74 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.7
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
+-+||++-|..+|++-++++++|++-
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~~ 29 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTEP 29 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCE
Confidence 45899999999999999999999874
No 8
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=16.77 E-value=56 Score=26.99 Aligned_cols=27 Identities=4% Similarity=-0.058 Sum_probs=24.3
Q ss_pred hHhccCcchhhhHHHHHHHHHhcccce
Q 012275 326 HVGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 326 ~iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
++-+||++-|..+|++.++++++|++-
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~ 30 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDY 30 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCce
Confidence 466899999999999999999999865
No 9
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=16.05 E-value=2.9e+02 Score=23.33 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhhHHHHH-HHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH
Q 012275 83 PPLLASAASAGILSLAWQWMTQSKPSKAMRIC-FWLGPLMTCAFGILLLVINSA--ASLSTGAVAIIAGVIQ 151 (467)
Q Consensus 83 ~~ll~~~~ia~vls~~~l~llr~~~~~~I~~~-l~~~~i~~l~~~i~~~~~~~~--~~~~~giv~~i~aii~ 151 (467)
++.+.+.+...+--+.|...+|..|-...+.. .-+.++++...|.. +++.+ .....|+.+.+.+++.
T Consensus 31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l--~lgE~ls~~~~~Gi~LIi~GV~l 100 (137)
T 2i68_A 31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWG--FFGQRLDLPAIIGMMLICAGVLI 100 (137)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHH--HHC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHH
Confidence 33444444434434578888888887766554 34566666666543 23322 1345666665555433
No 10
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=15.97 E-value=63 Score=26.19 Aligned_cols=26 Identities=4% Similarity=-0.042 Sum_probs=23.2
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
+-+||++-|..++++-++++++|++-
T Consensus 2 i~iY~~~~C~~C~kak~~L~~~gi~~ 27 (114)
T 1rw1_A 2 YVLYGIKACDTMKKARTWLDEHKVAY 27 (114)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCChHHHHHHHHHHHCCCce
Confidence 34899999999999999999999874
Done!