Query 012275
Match_columns 467
No_of_seqs 211 out of 604
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 06:13:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012275.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012275hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 28.0 1.7E+02 0.012 25.5 10.8 19 90-108 296-314 (447)
2 d1nm3a1 c.47.1.1 (A:166-239) C 17.8 21 0.0015 24.8 1.3 26 327-352 7-32 (74)
3 d1r7ha_ c.47.1.1 (A:) Glutared 16.7 25 0.0018 24.3 1.5 25 328-352 4-28 (74)
4 d1egoa_ c.47.1.1 (A:) Glutared 14.9 24 0.0018 25.2 1.0 24 327-350 3-26 (85)
5 d1rw1a_ c.47.1.12 (A:) Hypothe 13.5 38 0.0028 25.6 1.9 27 328-354 3-29 (114)
6 d1z3ea1 c.47.1.12 (A:1-114) Re 13.2 30 0.0022 26.4 1.1 28 327-354 2-29 (114)
7 d1h75a_ c.47.1.1 (A:) Glutared 12.5 38 0.0028 23.5 1.5 25 328-352 4-28 (76)
8 d1fova_ c.47.1.1 (A:) Glutared 10.1 46 0.0033 23.3 1.3 26 327-352 3-28 (82)
9 d1j9ba_ c.47.1.12 (A:) Arsenat 9.1 77 0.0056 24.8 2.4 26 328-353 3-28 (138)
10 d2fcra_ c.23.5.1 (A:) Flavodox 9.1 76 0.0055 25.8 2.5 24 330-353 98-121 (173)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=27.97 E-value=1.7e+02 Score=25.52 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHchh
Q 012275 90 ASAGILSLAWQWMTQSKPS 108 (467)
Q Consensus 90 ~ia~vls~~~l~llr~~~~ 108 (467)
+.+++.+++.-.+.....+
T Consensus 296 ~~~~~~~~~~g~~~~~~~~ 314 (447)
T d1pw4a_ 296 YAGIPGTLLCGWMSDKVFR 314 (447)
T ss_dssp HHHHHHHHHHHHHHHHTST
T ss_pred hhhhhhhhhhhhhhhhccc
Confidence 3344444444455554444
No 2
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=17.85 E-value=21 Score=24.84 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=20.9
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
|-||+++.|+-++++-++++++|+.-
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i~~ 32 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGLSF 32 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCe
Confidence 34788888888888889999988753
No 3
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=16.74 E-value=25 Score=24.26 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.5
Q ss_pred hccCcchhhhHHHHHHHHHhcccce
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-+|+++.|.-++++-++++++|++-
T Consensus 4 ~iYt~~~C~~C~~ak~~L~~~~i~~ 28 (74)
T d1r7ha_ 4 TLYTKPACVQCTATKKALDRAGLAY 28 (74)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCChhHHHHHHHHHHcCCce
Confidence 4789999999999999999998864
No 4
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=14.95 E-value=24 Score=25.19 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=18.8
Q ss_pred HhccCcchhhhHHHHHHHHHhccc
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGM 350 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~ 350 (467)
+-||+++.|+-++++-+|+.++|.
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~ 26 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSN 26 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCC
Confidence 347888888888888888887653
No 5
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.49 E-value=38 Score=25.63 Aligned_cols=27 Identities=4% Similarity=-0.064 Sum_probs=23.8
Q ss_pred hccCcchhhhHHHHHHHHHhcccceee
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMETLI 354 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~alv 354 (467)
-+||.+=|..+|++.+.++++|++--+
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~~ 29 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYDF 29 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeEE
Confidence 379999999999999999999987644
No 6
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=13.16 E-value=30 Score=26.39 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=24.3
Q ss_pred HhccCcchhhhHHHHHHHHHhcccceee
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMETLI 354 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~alv 354 (467)
+-+||.+=|..+|+|.+.++++|++.-+
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~~~~ 29 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIPFVE 29 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCeEE
Confidence 4589999999999999999999987543
No 7
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=12.53 E-value=38 Score=23.46 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.3
Q ss_pred hccCcchhhhHHHHHHHHHhcccce
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
-+|+++.|.-++++-+++.++|+.-
T Consensus 4 ~iYs~~~C~~C~~ak~~L~~~~i~y 28 (76)
T d1h75a_ 4 TIYTRNDCVQCHATKRAMENRGFDF 28 (76)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCCccHHHHHHHHHhcCcee
Confidence 4788898999999999999998864
No 8
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=10.13 E-value=46 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=20.4
Q ss_pred HhccCcchhhhHHHHHHHHHhcccce
Q 012275 327 VGVYNKGFIQASVDTWEMFKRAGMET 352 (467)
Q Consensus 327 iAiyG~~F~~AAk~~~~L~~~~g~~a 352 (467)
|-+|+++.|+=++++-++++++|+.-
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~~i~y 28 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSKGVSF 28 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCC
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCe
Confidence 34788888888888888999988753
No 9
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=9.09 E-value=77 Score=24.79 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.3
Q ss_pred hccCcchhhhHHHHHHHHHhccccee
Q 012275 328 GVYNKGFIQASVDTWEMFKRAGMETL 353 (467)
Q Consensus 328 AiyG~~F~~AAk~~~~L~~~~g~~al 353 (467)
-+||++=|..+|+|.++++++|++.-
T Consensus 3 ~iY~~p~Cs~srkal~~L~~~~i~~~ 28 (138)
T d1j9ba_ 3 TIYHNPACGTSRNTLEMIRNSGTEPT 28 (138)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCCCE
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 47999999999999999999998653
No 10
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=9.09 E-value=76 Score=25.77 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=20.9
Q ss_pred cCcchhhhHHHHHHHHHhccccee
Q 012275 330 YNKGFIQASVDTWEMFKRAGMETL 353 (467)
Q Consensus 330 yG~~F~~AAk~~~~L~~~~g~~al 353 (467)
|++.||+|++.-.+.++++|...+
T Consensus 98 y~~~F~~a~~~l~~~l~~~GA~~I 121 (173)
T d2fcra_ 98 YPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp CTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred chhhHHHHHHHHHHHHHhCCCEEe
Confidence 568899999999999999987654
Done!