BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012276
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 237/478 (49%), Gaps = 59/478 (12%)
Query: 21 AASHSTVKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGP 80
A ++ LPG F +GY+ S+ L Y+FV+S K+P+ P++LWL GGP
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYLKSSGSK--HLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 81 GCSAFSGLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPH 140
GCS+ GL E GP V+ +G TL NPYSW A++L+++SP G GFSY+
Sbjct: 59 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 113
Query: 141 ASQTGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIK 200
+ T D + + L+ + PE+ +N ++ G+SY+GI +P L + +
Sbjct: 114 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 166
Query: 201 PLINLQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITCGGEYVNVDPNNKD- 259
P +NLQG +GN + NS + FA+ GL+ N L+ SL+ C + +NKD
Sbjct: 167 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 226
Query: 260 -CLNDIQTFSKLT--SGVEKSHILEP-------HCQF-------------FSPKPRASSR 296
C+ ++Q +++ SG+ ++ P H ++ F+ P
Sbjct: 227 ECVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMW 286
Query: 297 NRRSLNVNEQSQEFLDPEPTFPPIGCRSYGYLLARYWDNDHNVRKALHIRQGSKGEWIRC 356
++ L ++ + +DP T A + N+ VRKAL+I + +W C
Sbjct: 287 HQALLRSGDKVR--MDPPCT---------NTTAASTYLNNPYVRKALNIPE-QLPQWDMC 334
Query: 357 NY--DLPYTHEIGNSFSYHVS-LSTKGYRSLIYSGDHDMLIPFLGTEAWIKSLNYSIVDD 413
N+ +L Y + S ++ LS++ Y+ L+Y+GD DM F+G E ++ SLN +
Sbjct: 335 NFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQ 394
Query: 414 WRPWILH-----SQVAGYTRTYSNQMTYATVKGGGHTAPEYRPAECYAMFQRWINHDP 466
RPW++ Q+AG+ + +S+ + + T+KG GH P +P + MF R++N P
Sbjct: 395 RRPWLVKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 18/266 (6%)
Query: 21 AASHSTVKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGP 80
A ++ LPG F +GY+ S+ L Y+FV+S K+P+ P++LWL GGP
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYLKGSGSK--HLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 81 GCSAFSGLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPH 140
GCS+ GL E GP V+ +G TL NPYSW A++L+++SP G GFSY+
Sbjct: 61 GCSSLDGLLTEHGPF---LVQPDGV--TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF 115
Query: 141 ASQTGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIK 200
+ T D + + L+ + PE+ +N ++ G+SY+GI +P L + +
Sbjct: 116 YA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQD------ 168
Query: 201 PLINLQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITCGGEYVNVDPNNKD- 259
P +NLQG +GN + NS + FA+ GL+ N L+ SL+ C + +NKD
Sbjct: 169 PSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDL 228
Query: 260 -CLNDIQTFSKLT--SGVEKSHILEP 282
C+ ++Q +++ SG+ ++ P
Sbjct: 229 ECVTNLQEVARIVGNSGLNIYNLYAP 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 64
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 65 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 119
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 120 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 175
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 176 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 217
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 65
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 66 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 120
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 121 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 176
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 177 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 218
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 70 YGASEELGAFR---VKPRGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%)
Query: 27 VKFLPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFS 86
+ LPG Q + F++ +GY+ V E LFY ++ ++ + PL+LWL GGPGCS+ +
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVA 69
Query: 87 -GLAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQT- 144
G + E+G V+ G+ L LN Y W K A++LF+DSP G GFSY T T
Sbjct: 70 YGASEELGAFR---VKPAGA--GLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTS 124
Query: 145 GDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRISNENEEDIKPLIN 204
GD + H FL KW P + FY+ G+SY+G VP L Q + P+IN
Sbjct: 125 GDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSK----NPVIN 180
Query: 205 LQGYILGNPRTDMVVEQNSQIPFAHGMGLISNELYESLKITC 246
L+G+++GN D + F G++S++ Y LK C
Sbjct: 181 LKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/437 (26%), Positives = 196/437 (44%), Gaps = 56/437 (12%)
Query: 43 TGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEY 102
TGY+ V E E+ F++ +S +P +DP++LWL GGPGCS+ +GL +E+GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSIG---- 72
Query: 103 NGSLPTLR--LNPYSWTKEASILFVDSPVGTGFSYARTPHASQT-GDFKQVHHLDQFLRK 159
P L+ NPYSW A+++F+D PV GFSY+ + S T K V++ FL
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYN---FLEL 125
Query: 160 WLMDHPEFISN--PFYVGGDSYSGITVPALVQRISNENEEDIKPLINLQGYILGNPRTDM 217
+ PE+++ F++ G+SY+G +P I + + + NL ++GN TD
Sbjct: 126 FFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDP 181
Query: 218 VVEQNSQIPFAHGMGLISNELYESLKITCGGEYVNVDPNNKDCLNDIQTFSKLTSGVEKS 277
+ + N P A G G + E ++ + + CL I++ S V
Sbjct: 182 LTQYNYYEPMACGEG-------GEPSVLPSEECSAMEDSLERCLGLIESCYDSQS-VWSC 233
Query: 278 HILEPHCQFFSPKPRASSRNRRSLNVNEQSQEFLDPEPTFPPIGCRSYGYLLARYWDNDH 337
+C + + R NV + ++ +P + + Y + D+
Sbjct: 234 VPATIYCN----NAQLAPYQRTGRNVYDIRKDCEGGNLCYPTL------QDIDDYLNQDY 283
Query: 338 NVRKALHIRQGSKGEWIRCNYDLPYTHEIGNSFS--YHVSLS---TKGYRSLIYSGDHDM 392
V++A+ + CN+D+ + YH +++ + L+Y+GD D
Sbjct: 284 -VKEAV---GAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDF 339
Query: 393 LIPFLGTEAWIKSLNYSIVDDW-----RPWI--LHSQVAGYTRTYSNQMTYATVKGGGHT 445
+ +LG +AW L + +++ R W + +VAG ++Y TY V GGH
Sbjct: 340 ICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-HFTYLRVFNGGHM 398
Query: 446 APEYRPAECYAMFQRWI 462
P P +M WI
Sbjct: 399 VPFDVPENALSMVNEWI 415
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/437 (25%), Positives = 194/437 (44%), Gaps = 56/437 (12%)
Query: 43 TGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEY 102
TGY+ V E E+ F++ +S +P +DP++LWL GGPGCS+ +GL + +GP +
Sbjct: 18 TGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIG---- 72
Query: 103 NGSLPTLR--LNPYSWTKEASILFVDSPVGTGFSYARTPHASQT-GDFKQVHHLDQFLRK 159
P L+ NPYSW A+++F+D PV GFSY+ + S T K V++ FL
Sbjct: 73 ----PDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYN---FLEL 125
Query: 160 WLMDHPEFISN--PFYVGGDSYSGITVPALVQRISNENEEDIKPLINLQGYILGNPRTDM 217
+ PE+++ F++ G SY+G +P I + + + NL ++GN TD
Sbjct: 126 FFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGLTDP 181
Query: 218 VVEQNSQIPFAHGMGLISNELYESLKITCGGEYVNVDPNNKDCLNDIQTFSKLTSGVEKS 277
+ + N P A G G + E ++ + + CL I++ S V
Sbjct: 182 LTQYNYYEPMACGEG-------GEPSVLPSEECSAMEDSLERCLGLIESCYDSQS-VWSC 233
Query: 278 HILEPHCQFFSPKPRASSRNRRSLNVNEQSQEFLDPEPTFPPIGCRSYGYLLARYWDNDH 337
+C + + R NV + ++ +P + + Y + D+
Sbjct: 234 VPATIYCN----NAQLAPYQRTGRNVYDIRKDCEGGNLCYPTL------QDIDDYLNQDY 283
Query: 338 NVRKALHIRQGSKGEWIRCNYDLPYTHEIGNSFS--YHVSLS---TKGYRSLIYSGDHDM 392
V++A+ + CN+D+ + YH +++ + L+Y+GD D
Sbjct: 284 -VKEAV---GAEVDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDF 339
Query: 393 LIPFLGTEAWIKSLNYSIVDDW-----RPWI--LHSQVAGYTRTYSNQMTYATVKGGGHT 445
+ +LG +AW L + +++ R W + +VAG ++Y TY V GGH
Sbjct: 340 ICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYK-HFTYLRVFNGGHM 398
Query: 446 APEYRPAECYAMFQRWI 462
P P +M WI
Sbjct: 399 VPFDVPENALSMVNEWI 415
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 115/237 (48%), Gaps = 14/237 (5%)
Query: 30 LPGFQGPLPFELETGYVGVGESEEAQLFYYFVKSDKNPKEDP-LLLWLTGGPGCSAFS-G 87
LPG + F + GYV + ++ L+Y+F ++D L+LWL GGPGCS+ G
Sbjct: 13 LPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCSSIGLG 72
Query: 88 LAYEIGPVNFNTVEYNGSLPTLRLNPYSWTKEASILFVDSPVGTGFSYARTPHASQTGDF 147
E+G +T NG +L LN Y+W K A+ILF +SP G GFSY+ T GD
Sbjct: 73 AMQELGAFRVHT---NGE--SLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDD 127
Query: 148 KQVHHLDQFLRKWLMDHPEFISNPFYVGGDSYSGITVPALVQRI-SNENEEDIKPLINLQ 206
K FL KW P + FY+ G+ SG +P L Q + N N P IN Q
Sbjct: 128 KMAQDTYTFLVKWFERFPHYNYREFYIAGE--SGHFIPQLSQVVYRNRNN---SPFINFQ 182
Query: 207 GYILGNPRTDMVVEQNSQIPFAHGMGLISNELYES-LKITCGGEYVNVDPNNKDCLN 262
G ++ + T+ + GLIS+E +S LK+ G +++ P + N
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWN 239
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/436 (23%), Positives = 165/436 (37%), Gaps = 70/436 (16%)
Query: 51 SEEAQLFYYFVKSDKNPKED-PLLLWLTGGPGCSAFSGLAYEIGPVNFNTVEYNGSLPTL 109
S+ F+ F +D N D PL++WL GGPGCS+ G E GP N S L
Sbjct: 47 SDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVN------SDGKL 100
Query: 110 RLNPYSWTKEASILFVDSPVGTGFSYARTPHASQTG------DFKQV-HHLDQFLRKWLM 162
LN SW + +LF+D P GTGFS + + D + V H FL +
Sbjct: 101 YLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFK 160
Query: 163 DHPEFISNPFYVGGDSYSGITVPALVQRISNENE--EDIKPLINLQGYILGNPRTDMVVE 220
PE ++ + G+SY+G +P I N N+ + +L+ ++GN D +
Sbjct: 161 IFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQ 220
Query: 221 QNSQIPFAHGMGLISNELYESLKITCGGEYVNVDPNNKDCLN---DIQTFSKLTSGVEKS 277
S +PFA LI +PN K N + Q S E +
Sbjct: 221 SLSYLPFAMEKKLIDES----------------NPNFKHLTNAHENCQNLINSASTDEAA 264
Query: 278 HILEPHCQ----FFSPKPRASSRNRRSLNVNEQSQEFLDPEPTFPPIGCRSYGYLLARYW 333
H C+ R SS+ + +N + D P+ + ++ +
Sbjct: 265 HFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVSKFF- 323
Query: 334 DNDHNVRKALHIRQGSKGEWIRCNYDLPYTHEIGNSFSYHVS---------LSTKGYRSL 384
+ V +LH+ W C T+ +G S +S L G +
Sbjct: 324 -STPGVIDSLHLDSDKIDHWKEC------TNSVGTKLSNPISKPSIHLLPGLLESGIEIV 376
Query: 385 IYSGDHDMLIPFLGTEAWIKSLNYSIVDDWR------PWILHS-------QVAGYTRTYS 431
+++GD D++ G I +L + + + WI S + +GY + Y
Sbjct: 377 LFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVK-YD 435
Query: 432 NQMTYATVKGGGHTAP 447
+T+ +V H P
Sbjct: 436 RNLTFVSVYNASHMVP 451
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
Query: 335 NDHNVRKALHIRQGSKGEWIRCNY--DLPYTHEIGNSFSYHVSL-STKGYRSLIYSGDHD 391
N+ VRKAL+I + +W CN+ +L Y + S ++ L S++ Y+ L+Y+GD D
Sbjct: 16 NNPYVRKALNIPE-QLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVD 74
Query: 392 MLIPFLGTEAWIKSLNYSIVDDWRPWILH-----SQVAGYTRTYSNQMTYATVKGGGHTA 446
M F+G E ++ SLN + RPW++ Q+AG+ + +S+ + + T+KG GH
Sbjct: 75 MACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMV 133
Query: 447 PEYRPAECYAMFQRWINHDP 466
P +P + MF R++N P
Sbjct: 134 PTDKPLAAFTMFSRFLNKQP 153
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 335 NDHNVRKALHIRQGSKGE--WIRCNYDL--PYTHEIGNSFSYHVSLSTKGYRSLIYSGDH 390
N V+ ALH E W C+ + + + + L G R +YSGD
Sbjct: 17 NLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAGLRVWVYSGDT 76
Query: 391 DMLIPFLGTEAWIKSLNYSIVDDWRPWIL---HSQVAGYTRTYSNQMTYATVKGGGHTAP 447
D ++P T + +L + W PW + +V G++ Y +TY TV+G GH P
Sbjct: 77 DSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEG-LTYVTVRGAGHLVP 135
Query: 448 EYRPAECYAMFQRWINHDPL 467
+RPA+ + +F++++ +P+
Sbjct: 136 VHRPAQAFLLFKQFLKGEPM 155
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 335 NDHNVRKALH--IRQGSKGEWIRCNYDL-PYTHEIGNS-FSYHVSLSTKGYRSLIYSGDH 390
N +V+ ALH + W C+ + + H+ S + L G R ++SGD
Sbjct: 15 NRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDT 74
Query: 391 DMLIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYR 450
D ++P T I +L W PW +V G+++ Y +T +V+G GH P +R
Sbjct: 75 DAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGHEVPLHR 133
Query: 451 PAECYAMFQRWINHDPL 467
P + +FQ ++ P+
Sbjct: 134 PRQALVLFQYFLQGKPM 150
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 335 NDHNVRKALH--IRQGSKGEWIRCNYDL-PYTHEIGNS-FSYHVSLSTKGYRSLIYSGDH 390
N +V+ ALH + W C+ + + H+ S + L G R ++SGD
Sbjct: 17 NRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDT 76
Query: 391 DMLIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYR 450
D ++P T I +L W PW +V G+++ Y +T +V+G GH P +R
Sbjct: 77 DAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGHEVPLHR 135
Query: 451 PAECYAMFQRWINHDPL 467
P + +FQ ++ P+
Sbjct: 136 PRQALVLFQYFLQGKPM 152
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 335 NDHNVRKALH--IRQGSKGEWIRCNYDL-PYTHEIGNS-FSYHVSLSTKGYRSLIYSGDH 390
N +V+ ALH + W C+ + + H+ S + L G R ++SGD
Sbjct: 15 NRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDT 74
Query: 391 DMLIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYR 450
D ++P T I +L W PW +V G+++ Y +T +V+G GH P +R
Sbjct: 75 DAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGHEVPLHR 133
Query: 451 PAECYAMFQRWINHDPL 467
P + +FQ ++ P+
Sbjct: 134 PRQALVLFQYFLQGKPM 150
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 335 NDHNVRKALH--IRQGSKGEWIRCNYDL-PYTHEIGNS-FSYHVSLSTKGYRSLIYSGDH 390
N +V+ ALH + W C+ + + H+ S + L G R ++SGD
Sbjct: 15 NRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSGDT 74
Query: 391 DMLIPFLGTEAWIKSLNYSIVDDWRPWILHSQVAGYTRTYSNQMTYATVKGGGHTAPEYR 450
D ++P T I +L W PW +V G+++ Y +T +V+G GH P +R
Sbjct: 75 DAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGHEVPLHR 133
Query: 451 PAECYAMFQRWINHDPL 467
P + +FQ ++ P+
Sbjct: 134 PRQALVLFQYFLQGKPM 150
>pdb|2I9L|B Chain B, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|D Chain D, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|F Chain F, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|H Chain H, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
Length = 219
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 55/152 (36%), Gaps = 25/152 (16%)
Query: 301 LNVNEQSQEFLDPEPTFPPIGCRSYGYLLARYWDNDHNVRKALHIRQGSKGEWI-RCNYD 359
+ + + E P + + C++ GY RYW H V++ R G EWI N
Sbjct: 2 VQLQQSGAELAKPGASVK-MSCKASGYTFTRYW--MHWVKQ----RPGQGLEWIGYINPS 54
Query: 360 LPYTHEIGNSFSYHVSLSTKGYRSLIYSGDHDMLIPFLGTEAWIKSLNYSIVDDWRPWIL 419
YT E F +L+ S +Y M + L +E D +
Sbjct: 55 TGYT-EYNQKFKDKATLTADKSSSTVY-----MQLSSLTSE-----------DSAVYYCA 97
Query: 420 HSQVAGYTRTYSNQMTYATVKGGGHTAPEYRP 451
+ V GY Y Q T TV TAP P
Sbjct: 98 RTTVDGYDFAYWGQGTLVTVSAAKTTAPSVYP 129
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 42 ETGYVGVGESEEAQLFYYFVKSDKNPKEDPLLLWLTGGPGCSAF 85
E GYV VGE+E D P E P L L GGPG +A+
Sbjct: 4 EIGYVPVGEAE-------LYVEDVGPVEGPALFVLHGGPGGNAY 40
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 139 PHASQTGDFKQ--VHHLDQFLRKWLMDHPEFI 168
P +TG+F + +H +D F+R+W D P+++
Sbjct: 104 PDFCETGEFGEAGIHKMDGFMREWWYDDPKYL 135
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 139 PHASQTGDFKQ--VHHLDQFLRKWLMDHPEFI 168
P +TG+F + +H +D F+R+W D P+++
Sbjct: 104 PDFCETGEFGEAGIHKMDGFMREWWYDDPKYL 135
>pdb|3M1R|A Chain A, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|B Chain B, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|C Chain C, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|D Chain D, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|E Chain E, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
pdb|3M1R|F Chain F, The Crystal Structure Of Formimidoylglutamase From
Bacillus Subtilis Subsp. Subtilis Str. 168
Length = 322
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 144 TGDFKQVHHLDQFLRKWLMDHPEFISNPFYVGGD-SYSGITVPALVQ 189
T K HH+ Q L DHP+++ P +GGD S S T+ A+ Q
Sbjct: 98 TDIVKSHHHIFQTXHALLSDHPDWV--PLILGGDNSISYSTIKAIAQ 142
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 93 GPVNFNTVEYNGSLPTLRLN 112
GP+ N V YNG +P + LN
Sbjct: 391 GPIKVNNVNYNGVMPAMNLN 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,993,979
Number of Sequences: 62578
Number of extensions: 734506
Number of successful extensions: 1605
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1547
Number of HSP's gapped (non-prelim): 28
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)