BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012277
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 201 bits (511), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 135/482 (28%), Positives = 233/482 (48%), Gaps = 40/482 (8%)
Query: 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDXXXXXIP------LE 68
H +++ YP QGHINPL + ++ L +G +T V T + +K L + E
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 69 AISDGYD--EGGYAQAESIEAYLERFWQIGPQTLTELVEKMNGSDS--PVDCIVYDSILL 124
+I DG EG ++ + + + + EL+ ++N S + PV C+V D +
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMS 129
Query: 125 WALDVAKKFGLLGAPFLTQSCA----VDYIYYHVKKGSLELPLTGNEIL----------- 169
+ + A++F L + + S V + V++G + P L
Sbjct: 130 FTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGII--PFKDESYLTNGCLETKVDW 187
Query: 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKAD---WVLCNTFYXXXXXXXX 226
+PG+ +D+ FI + +M++F E D+ + +L NTF
Sbjct: 188 IPGLKNFRLKDIVDFIRTTNP----NDIMLEFFIEVADRVNKDTTILLNTFNELESDVIN 243
Query: 227 XXXWLRKTWSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYV 286
S+ IGP QI +++K TE C+ WL + SVVYV
Sbjct: 244 ALS--STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTE-CLDWLESKEPGSVVYV 300
Query: 287 SYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLT--SHKSLVVSW 344
++GS + E++ E AWGL + + FLW++R FS E + + L+ SW
Sbjct: 301 NFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASW 360
Query: 345 CPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKF 404
CPQ +VL H + G F+THCGWNST E++ GVPM+ P ++DQ T+ ++I + W+ G++
Sbjct: 361 CPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI 420
Query: 405 PI-VKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 463
VKR+ +A I+E++ G++GK++++ A + +K A+E GG S N+++ + +
Sbjct: 421 DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLLK 480
Query: 464 KN 465
+N
Sbjct: 481 QN 482
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 195/404 (48%), Gaps = 41/404 (10%)
Query: 70 ISDGYDEGGYAQAESIEAYLERFWQIGPQTLTE-LVEKMNGSDSPVDCIVYDSILLWALD 128
ISDG EG Y A + +E F + P++ + +V + + PV C+V D+ + +A D
Sbjct: 69 ISDGVPEG-YVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAAD 127
Query: 129 VAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTG-----NEIL--LPGMPPLEPQDM 181
+A + G+ PF T + ++ + ++ ++G +E+L +PGM + +D+
Sbjct: 128 MAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDL 187
Query: 182 PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYXXXXXXXXXXXWLRKTW------ 235
I G+ ++ M+ + + KA V N+F KT+
Sbjct: 188 QEGIV-FGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPF 246
Query: 236 SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELK 295
+L T P +P+ T C++WL +R SVVY+S+G+
Sbjct: 247 NLITPPPVVPN---------------------TTGCLQWLKERKPTSVVYISFGTVTTPP 285
Query: 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEA 355
E+ L+ L++S F+W +R+ + LP+ F ++T +VV W PQ EVLAHEA
Sbjct: 286 PAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKT--RGYGMVVPWAPQAEVLAHEA 343
Query: 356 TGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIA 413
G FVTHCGWNS E+++ GVP++ P + DQ N + + DV + G++ + + +
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLM 403
Query: 414 DCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 457
C +IL E+GK+LR N R+ A AV GSS N V
Sbjct: 404 SCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 212/477 (44%), Gaps = 64/477 (13%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTT---------RFFYKSLHRDXX 61
K H ++ PG GH+ PL++F++RL H G+ VT V R SL
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 62 XXXIPLEAISDGYDEGGYAQAESIEAYLE-RFWQIGPQTLTELVEKMNGSDSPVDCIVYD 120
+P ++D + + IE+ + + P+ + G P +V D
Sbjct: 65 SVFLPPVDLTD------LSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPT-ALVVD 117
Query: 121 SILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK----GSLELPLTGNEILLPGMPPL 176
A DVA +F + F + V + H+ K S E ++LPG P+
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPV 177
Query: 177 EPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYXXXXXXXXXXXWLRKTWS 236
+D F+ +Y + + +A+ +L NTF+ +
Sbjct: 178 AGKD---FLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIK---------A 225
Query: 237 LRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEA-CMKWLNDRAKESVVYVSYGSFVELK 295
L+ G P Y + + G K + E+ C+KWL+++ SV+YVS+GS L
Sbjct: 226 LQEPGLDKPPVY---PVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLT 282
Query: 296 AEEMEELAWGLKSSDQHFLWVVRESEQAK----------------LPKKFSDETLTSHKS 339
E++ ELA GL S+Q FLWV+R LP F + T +
Sbjct: 283 CEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT--KKRG 340
Query: 340 LVVS-WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVW 398
V+ W PQ +VLAH +TG F+THCGWNST+E++ G+P++A P +++Q NA + +
Sbjct: 341 FVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDI 400
Query: 399 KTGLKFP------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSS 449
+ L+ P +V+R+ +A + ++EGE GK +R + ++ A + G+S
Sbjct: 401 RAALR-PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTS 456
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 200/462 (43%), Gaps = 56/462 (12%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT-------RFFYKSLHRDXXXXX 64
L H VL +P H PLL +++ + KVT F +S +
Sbjct: 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRS---NEFLPN 68
Query: 65 IPLEAISDGYDEGGYAQAES-------IEAYLERFWQIGPQTLTELVEKMNGSDSPVDCI 117
I + DG +G + I+A E F + + + E + + C+
Sbjct: 69 IKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAE-------TGKNITCL 121
Query: 118 VYDSILLWALDVAKKFGLLGAPFLTQS--CAVDYIYYHV---KKGSLELPLTGNEILLPG 172
V D+ + D+A++ P T + ++Y + K GS E+ + +LPG
Sbjct: 122 VTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPG 181
Query: 173 MPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYXXXXXXXXXXXWLR 232
P L+ D+P + P + M+ K E + +A+ V N+F
Sbjct: 182 FPELKASDLPEGVIKDIDVP-FATMLHKMGLE-LPRANAVAINSFATIHPLIENELN--S 237
Query: 233 KTWSLRTIGP---TIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYG 289
K L +GP T P +++ D+ C++WL+ SVVY+S+G
Sbjct: 238 KFKLLLNVGPFNLTTP----QRKVSDE------------HGCLEWLDQHENSSVVYISFG 281
Query: 290 SFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLE 349
S V E+ LA L+ F+W R + KLPK F + T T K +V+W PQ+E
Sbjct: 282 SVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGK--IVAWAPQVE 339
Query: 350 VLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IV 407
+L H + G F+TH GWNS +E + GVPM++ P + DQ N V + G+ ++
Sbjct: 340 ILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVL 399
Query: 408 KRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSS 449
+++I + + E+G +R+ K ++ A +AV + G+S
Sbjct: 400 TKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTS 441
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 211/482 (43%), Gaps = 53/482 (10%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQH--KGIKVTLVTTRF--------FYKS-LHRDX 60
K + + + PG GH+ L+F++ L + K + +T+ +F + KS L
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 61 XXXXIPLEAISDGYDEGGYAQAESIEAYLERFW-QIGPQTLTELVEKMNGSDSPVDCIVY 119
I L + E + I +LE + T L K+ G +V
Sbjct: 68 QIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVG-------LVL 120
Query: 120 DSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE-----ILLPGMP 174
D + +DV +FG+ FLT + + +K +E ++ + +PG+
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 175 PLEPQDM---PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYXXXXXXXXXXXWL 231
P ++ F D G Y A + +F+ ++ NTF
Sbjct: 181 NQVPSNVLPDACFNKD-GGYIAYYKLAERFR-----DTKGIIVNTFSDLEQSSID----- 229
Query: 232 RKTWSLRTIGPTIPSFYLDKQIEDDKDY-GFSMFKSSTEACMKWLNDRAKESVVYVSYGS 290
+L IP Y + D K + ++ + +KWL+++ +SVV++ +GS
Sbjct: 230 ----ALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGS 285
Query: 291 F-VELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLE 349
V ++ E+A GLK S FLW +E+ P+ F + K ++ W PQ+E
Sbjct: 286 MGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAPQVE 344
Query: 350 VLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKR 409
VLAH+A G FV+HCGWNS +E++ GVP++ P +++Q NA ++ W GL + R
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 410 DAIADCIS--EILEG-----ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462
+D ++ EI +G ++ + + + +++++ AV GGSS ++ + + +
Sbjct: 405 KG-SDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDITG 463
Query: 463 SK 464
S
Sbjct: 464 SN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 210/475 (44%), Gaps = 53/475 (11%)
Query: 12 KLAHCLVLTYPGQGHINPLLQFSRRLQH--KGIKVTLVTTRF--------FYKS-LHRDX 60
K + + + PG GH+ L+F++ L + K + +T+ +F + KS L
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP 67
Query: 61 XXXXIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTL-TELVEKMNGSDSPVDCIVY 119
I L + E + I +LE T+ T L K+ G +V
Sbjct: 68 QIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVG-------LVL 120
Query: 120 DSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE-----ILLPGMP 174
D + +DV +FG+ FLT + + +K +E ++ + +PG+
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 175 PLEPQDM---PSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYXXXXXXXXXXXWL 231
P ++ F D G Y A + +F+ ++ NTF
Sbjct: 181 NQVPSNVLPDACFNKD-GGYIAYYKLAERFR-----DTKGIIVNTFSDLEQSSID----- 229
Query: 232 RKTWSLRTIGPTIPSFYLDKQIEDDKDY-GFSMFKSSTEACMKWLNDRAKESVVYVSYGS 290
+L IP Y + D K + ++ + +KWL+++ +SVV++ +GS
Sbjct: 230 ----ALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGS 285
Query: 291 F-VELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLE 349
V ++ E+A GLK S FLW +E+ P+ F + K ++ W PQ+E
Sbjct: 286 MGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAPQVE 344
Query: 350 VLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKR 409
VLAH+A G FV+HCGWNS +E++ GVP++ P +++Q NA ++ W GL + R
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404
Query: 410 DAIADCIS--EILEG-----ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 457
+D ++ EI +G ++ + + + +++++ AV GGSS ++ + +
Sbjct: 405 KG-SDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 341 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKT 400
V W PQL++L + F+TH G STMEALS VPMVA+PQ ++Q+ NA+ I+++
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL--- 363
Query: 401 GLKFPIVKRDAIADCISEIL 420
GL I + A+ + E +
Sbjct: 364 GLGRHIPRDQVTAEKLREAV 383
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 7 KPTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52
+ S H PG GH+NP L + L +G +V+ T F
Sbjct: 6 RSASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEF 51
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 274 WLNDRAKESVVYVSYGSFVELKAEEMEE-LAWGLKSSDQHFLWVVRESEQAKLPKKFSDE 332
++ + VV S GS V EE +A L Q LW ++ +
Sbjct: 14 FVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKP---------D 64
Query: 333 TLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAK 392
TL + L W PQ ++L H T F+TH G N EA+ G+P V +P ++DQ N
Sbjct: 65 TLGLNTRLY-KWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIA 123
Query: 393 Y 393
+
Sbjct: 124 H 124
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 341 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKT 400
V W PQL +L FVTH G + E L+ PM+A+PQ DQ NA + +
Sbjct: 287 VHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL--- 341
Query: 401 GLKFPIVKRDAIADCISE-----ILEGERGKELRR 430
G+ + +A AD + E + + E + LRR
Sbjct: 342 GVARKLATEEATADLLRETALALVDDPEVARRLRR 376
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 9 TSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDXXXXXIPLE 68
T AH + + GH+NP L+ R L +G +VT F + +
Sbjct: 3 TQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVL-YH 61
Query: 69 AISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALD 128
+ G D A ++ +E F Q L +L + +D D +++D A
Sbjct: 62 STLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQLADAY--ADDIPDLVLHDITSYPARV 119
Query: 129 VAKKFGL 135
+A+++G+
Sbjct: 120 LARRWGV 126
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 344 WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLK 403
W P ++VL +AT C VTH G + EAL G P+V +PQ D A+ + D G
Sbjct: 304 WVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 404 FPIVKRDA 411
P K D
Sbjct: 361 LPGEKADG 368
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 344 WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLK 403
W P ++VL +AT C VTH G + EAL G P+V +PQ D A+ + D G
Sbjct: 304 WVPHVKVL-EQATVC-VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 404 FPIVKRDA 411
P K D
Sbjct: 361 LPGEKADG 368
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 344 WCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST 389
W P VLAH A C +TH + +EA + GVP+V +P ++ ++
Sbjct: 288 WIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAA 331
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDXXXXXIPLEAISDGY 74
H L G GH+ P L L +G ++T VTT F + + + ++ D +
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV-KAAGAEVVLYKSEFDTF 64
Query: 75 DEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYD 120
+ E E L + + E+ G D+P D +VYD
Sbjct: 65 HVPEVVKQEDAETQLHLVYVRENVAILRAAEEALG-DNPPDLVVYD 109
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 343 SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQS 388
SW PQ +L H V H G +T+ AL GVP ++ P W+ S
Sbjct: 298 SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP-WAGDS 340
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 341 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 390
VV W P +L E + H G + + AL+ GVP +P S Q TN
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 341 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 390
VV W P +L E + H G + + AL+ GVP +P S Q TN
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 342 VSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTG 401
V W P L+V+A V H G ST+ LS GVP + +P+ S A+ + D
Sbjct: 268 VGWTP-LDVVA-PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAI 325
Query: 402 LKFPIV-KRDAIADCISEILE----GERGKELRRN 431
P +AIAD E+ R ++L R
Sbjct: 326 ALLPGEDSTEAIADSCQELQAKDTYARRAQDLSRE 360
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 330 SDETLTSHKSL--VVSWCPQLEVLAHEATGCFVT-----HCGWNSTMEALSLGVPMVAMP 382
+D T+ ++ SL ++ ++ A + FV HCGW M ++ G + +P
Sbjct: 367 TDSTIGAYSSLERIIELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIP 426
Query: 383 QWSDQSTNAKYILDVWKTGLK--------------FPIVKRDAIADCISEILEGERGKEL 428
+ +N WK LK IV AI D ++ I E K++
Sbjct: 427 ERPPSESN-------WKDDLKKVCLRHREKGRRKTTVIVAEGAIDDQLNPITS-EEVKDV 478
Query: 429 RRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 460
G ++ + + G + D F+A++
Sbjct: 479 LVEIGLDTRITRLGHVQRGGAPCAFDRFLATV 510
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 79 YAQAESIEAYLERF----WQIGPQTLTELVEKMNGSDSPV------DCIVYD 120
Y + ESI+ + F WQ+ + E+ ++MNGSDS + DCI D
Sbjct: 127 YLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDSGMFACKYADCITKD 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,166,560
Number of Sequences: 62578
Number of extensions: 566117
Number of successful extensions: 1088
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 31
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)