Query 012277
Match_columns 467
No_of_seqs 122 out of 1254
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 00:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 4.5E-63 9.7E-68 491.2 47.8 440 11-463 5-470 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 1.2E-62 2.5E-67 484.3 45.4 437 13-462 5-448 (449)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.5E-61 5.3E-66 477.2 45.6 429 11-462 5-450 (451)
4 PLN02210 UDP-glucosyl transfer 100.0 6.5E-61 1.4E-65 476.1 45.7 436 10-462 5-455 (456)
5 PLN02562 UDP-glycosyltransfera 100.0 5.4E-61 1.2E-65 476.3 44.8 429 11-461 4-448 (448)
6 PLN02152 indole-3-acetate beta 100.0 9.3E-60 2E-64 464.5 44.6 429 14-461 4-455 (455)
7 PLN02448 UDP-glycosyltransfera 100.0 2.6E-59 5.6E-64 467.8 44.8 430 10-462 7-457 (459)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.8E-59 1.3E-63 463.5 43.6 438 11-463 7-472 (477)
9 PLN02992 coniferyl-alcohol glu 100.0 1.1E-58 2.4E-63 458.5 43.8 418 14-461 6-468 (481)
10 PLN02207 UDP-glycosyltransfera 100.0 1.5E-58 3.2E-63 456.8 44.1 433 12-464 2-467 (468)
11 PLN02534 UDP-glycosyltransfera 100.0 2.9E-58 6.3E-63 457.4 44.5 436 11-463 6-487 (491)
12 PLN03007 UDP-glucosyltransfera 100.0 9.2E-58 2E-62 458.9 43.6 436 12-463 4-481 (482)
13 PLN00164 glucosyltransferase; 100.0 2.1E-57 4.6E-62 453.8 44.7 426 12-463 2-474 (480)
14 PLN03015 UDP-glucosyl transfer 100.0 2.6E-57 5.7E-62 446.1 43.7 423 12-461 2-467 (470)
15 PLN02670 transferase, transfer 100.0 1E-57 2.2E-62 451.4 41.0 427 13-465 6-468 (472)
16 PLN02554 UDP-glycosyltransfera 100.0 1.3E-57 2.7E-62 457.3 42.2 425 13-463 2-479 (481)
17 PLN03004 UDP-glycosyltransfera 100.0 4E-57 8.6E-62 445.4 41.3 417 13-451 3-450 (451)
18 PLN02208 glycosyltransferase f 100.0 1.2E-56 2.7E-61 442.7 41.7 412 13-462 4-439 (442)
19 PLN02167 UDP-glycosyltransfera 100.0 2.7E-56 5.8E-61 447.0 43.4 430 12-463 2-473 (475)
20 PLN02764 glycosyltransferase f 100.0 4.2E-56 9E-61 436.4 42.9 415 12-465 4-448 (453)
21 PLN00414 glycosyltransferase f 100.0 1.9E-55 4.1E-60 434.7 41.3 414 12-465 3-443 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.7E-47 1.2E-51 381.3 34.9 401 11-461 18-465 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.2E-47 1.1E-51 388.0 11.0 373 15-442 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.9E-43 4.2E-48 350.5 31.5 374 19-460 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7.5E-43 1.6E-47 347.9 27.3 361 14-441 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 3E-41 6.5E-46 331.0 25.5 386 13-463 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.3E-37 5.1E-42 316.8 26.0 392 13-441 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 3.7E-26 8.1E-31 221.5 27.9 320 14-434 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 100.0 2.7E-26 5.9E-31 221.4 26.6 304 14-419 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 3.1E-23 6.8E-28 199.8 25.7 309 15-423 1-315 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 8E-22 1.7E-26 188.9 29.3 311 14-423 1-325 (357)
32 PRK00726 murG undecaprenyldiph 99.9 2E-19 4.4E-24 176.4 28.2 324 13-438 1-337 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.5E-18 5.5E-23 168.2 27.2 313 15-423 1-325 (350)
34 COG4671 Predicted glycosyl tra 99.8 4.3E-17 9.3E-22 148.8 22.5 339 10-422 6-365 (400)
35 TIGR01133 murG undecaprenyldip 99.8 1.5E-16 3.2E-21 155.6 25.1 309 14-423 1-322 (348)
36 TIGR03590 PseG pseudaminic aci 99.7 4.1E-16 8.8E-21 146.6 20.3 106 281-393 170-278 (279)
37 TIGR00215 lpxB lipid-A-disacch 99.7 3E-16 6.5E-21 154.5 19.7 349 15-457 7-383 (385)
38 PRK13609 diacylglycerol glucos 99.7 8E-16 1.7E-20 152.2 22.7 136 279-423 200-339 (380)
39 PRK13608 diacylglycerol glucos 99.7 1.7E-14 3.6E-19 142.9 22.3 136 279-423 200-339 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 1.4E-13 2.9E-18 136.4 22.8 142 279-431 184-347 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 1.5E-16 3.2E-21 138.3 0.1 133 283-423 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.5 8.6E-13 1.9E-17 130.5 21.9 146 269-422 194-347 (382)
43 TIGR03492 conserved hypothetic 99.4 2.2E-11 4.8E-16 120.2 23.3 328 22-423 5-365 (396)
44 cd03814 GT1_like_2 This family 99.4 2.3E-10 5E-15 111.9 28.5 129 281-423 196-333 (364)
45 PF03033 Glyco_transf_28: Glyc 99.4 4.9E-14 1.1E-18 118.5 -0.1 124 16-146 1-133 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 7.5E-10 1.6E-14 112.5 29.8 127 283-423 264-401 (465)
47 cd03800 GT1_Sucrose_synthase T 99.4 1.7E-09 3.7E-14 107.5 31.5 336 15-423 8-369 (398)
48 cd03808 GT1_cap1E_like This fa 99.4 4.1E-09 8.9E-14 102.4 32.5 318 15-423 1-330 (359)
49 cd03818 GT1_ExpC_like This fam 99.3 1.7E-09 3.6E-14 107.8 29.5 81 336-423 280-367 (396)
50 COG3980 spsG Spore coat polysa 99.3 2.5E-10 5.4E-15 101.9 19.8 145 281-436 158-304 (318)
51 cd03794 GT1_wbuB_like This fam 99.3 1E-09 2.2E-14 108.0 26.1 135 280-423 218-366 (394)
52 cd04962 GT1_like_5 This family 99.3 4.6E-09 9.9E-14 103.5 30.6 133 281-423 196-337 (371)
53 cd03816 GT1_ALG1_like This fam 99.3 3.4E-09 7.3E-14 106.0 29.8 77 337-422 294-381 (415)
54 cd03823 GT1_ExpE7_like This fa 99.3 2.5E-09 5.5E-14 104.2 28.3 133 280-423 189-330 (359)
55 cd03817 GT1_UGDG_like This fam 99.3 1.5E-08 3.3E-13 99.1 30.4 134 281-423 201-344 (374)
56 PRK10307 putative glycosyl tra 99.2 2.9E-08 6.3E-13 99.4 31.9 145 281-436 228-388 (412)
57 cd03801 GT1_YqgM_like This fam 99.2 1.1E-08 2.4E-13 99.5 27.6 82 335-423 254-342 (374)
58 cd03825 GT1_wcfI_like This fam 99.2 4.2E-08 9.1E-13 96.2 30.0 82 335-423 242-331 (365)
59 cd03820 GT1_amsD_like This fam 99.2 3.7E-08 8E-13 95.1 28.5 142 282-434 178-328 (348)
60 TIGR03449 mycothiol_MshA UDP-N 99.2 1.2E-07 2.5E-12 94.8 32.2 82 335-423 281-369 (405)
61 TIGR02472 sucr_P_syn_N sucrose 99.1 1.8E-07 4E-12 94.3 32.5 132 283-423 249-407 (439)
62 TIGR02468 sucrsPsyn_pln sucros 99.1 1.4E-07 3.1E-12 100.9 32.7 365 11-423 167-638 (1050)
63 PRK05749 3-deoxy-D-manno-octul 99.1 4.1E-08 8.8E-13 98.7 27.6 112 338-460 303-420 (425)
64 cd03821 GT1_Bme6_like This fam 99.1 1.5E-07 3.3E-12 91.9 30.4 80 335-423 260-346 (375)
65 cd03805 GT1_ALG2_like This fam 99.1 1.1E-07 2.3E-12 94.5 29.2 81 335-423 278-365 (392)
66 cd03798 GT1_wlbH_like This fam 99.1 1.1E-07 2.4E-12 92.7 27.3 136 281-423 201-345 (377)
67 cd03796 GT1_PIG-A_like This fa 99.1 2.9E-07 6.2E-12 91.8 30.1 134 280-423 191-334 (398)
68 cd03795 GT1_like_4 This family 99.1 9.3E-08 2E-12 93.4 26.0 133 281-423 190-333 (357)
69 PRK09922 UDP-D-galactose:(gluc 99.1 9.3E-08 2E-12 93.9 25.0 134 282-423 180-325 (359)
70 cd05844 GT1_like_7 Glycosyltra 99.0 2.4E-07 5.2E-12 91.0 26.9 82 335-423 243-337 (367)
71 cd03819 GT1_WavL_like This fam 99.0 4.4E-07 9.4E-12 88.7 28.4 135 280-421 183-329 (355)
72 TIGR00236 wecB UDP-N-acetylglu 99.0 2.7E-08 6E-13 97.9 19.9 138 281-433 197-342 (365)
73 cd03811 GT1_WabH_like This fam 99.0 6.5E-08 1.4E-12 93.5 22.3 136 280-423 187-333 (353)
74 cd04951 GT1_WbdM_like This fam 99.0 9E-07 1.9E-11 86.5 28.6 130 281-422 187-326 (360)
75 cd03799 GT1_amsK_like This is 99.0 5E-07 1.1E-11 88.1 26.5 135 281-423 178-328 (355)
76 cd03822 GT1_ecORF704_like This 99.0 9.5E-07 2.1E-11 86.3 28.5 81 335-423 245-335 (366)
77 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 4.9E-08 1.1E-12 96.0 18.6 134 280-423 197-338 (363)
78 PF04007 DUF354: Protein of un 98.9 1E-06 2.3E-11 84.0 26.3 300 14-420 1-308 (335)
79 PRK14089 ipid-A-disaccharide s 98.9 1.2E-07 2.7E-12 91.0 19.8 147 281-440 167-333 (347)
80 TIGR02470 sucr_synth sucrose s 98.9 5.6E-06 1.2E-10 87.0 33.1 79 335-420 617-707 (784)
81 cd03812 GT1_CapH_like This fam 98.9 4.9E-07 1.1E-11 88.4 24.2 135 280-423 190-332 (358)
82 cd03802 GT1_AviGT4_like This f 98.9 1.4E-07 3.1E-12 91.3 19.8 128 284-422 173-308 (335)
83 TIGR03088 stp2 sugar transfera 98.9 3.8E-06 8.2E-11 82.9 29.3 136 280-423 192-339 (374)
84 cd04955 GT1_like_6 This family 98.9 1.6E-06 3.5E-11 84.9 26.0 127 284-423 195-331 (363)
85 cd03807 GT1_WbnK_like This fam 98.9 4.6E-06 9.9E-11 81.1 29.0 134 280-423 191-333 (365)
86 PLN00142 sucrose synthase 98.9 1.5E-06 3.2E-11 91.4 26.2 79 335-420 640-730 (815)
87 PLN02949 transferase, transfer 98.8 1.7E-05 3.7E-10 80.0 30.2 80 335-422 333-422 (463)
88 PRK15427 colanic acid biosynth 98.8 1.1E-05 2.5E-10 80.3 28.5 135 281-423 221-372 (406)
89 PLN02275 transferase, transfer 98.8 7E-06 1.5E-10 80.9 26.5 75 337-420 286-371 (371)
90 TIGR02149 glgA_Coryne glycogen 98.7 3.1E-05 6.8E-10 76.7 30.6 133 282-423 201-353 (388)
91 cd03809 GT1_mtfB_like This fam 98.7 6.2E-06 1.3E-10 80.5 23.9 141 282-434 195-345 (365)
92 cd03804 GT1_wbaZ_like This fam 98.7 2.2E-06 4.9E-11 83.8 19.5 125 284-423 197-327 (351)
93 PRK15179 Vi polysaccharide bio 98.7 3.3E-05 7.1E-10 81.1 28.6 147 282-436 517-674 (694)
94 TIGR03087 stp1 sugar transfera 98.6 4.8E-06 1E-10 83.0 20.7 80 335-423 278-363 (397)
95 cd03792 GT1_Trehalose_phosphor 98.6 3.4E-05 7.3E-10 76.1 26.5 133 282-423 190-338 (372)
96 PRK00654 glgA glycogen synthas 98.6 2.9E-05 6.2E-10 79.0 25.0 134 281-421 281-427 (466)
97 KOG3349 Predicted glycosyltran 98.5 1.5E-06 3.3E-11 70.2 10.5 112 282-400 4-128 (170)
98 cd03806 GT1_ALG11_like This fa 98.5 6.4E-05 1.4E-09 75.3 24.3 81 335-423 303-393 (419)
99 COG1519 KdtA 3-deoxy-D-manno-o 98.5 0.00022 4.7E-09 68.7 26.0 312 16-423 51-387 (419)
100 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 1.4E-05 3.1E-10 78.3 18.5 129 280-421 200-338 (365)
101 PLN02846 digalactosyldiacylgly 98.4 6.6E-05 1.4E-09 75.0 22.8 73 341-423 288-364 (462)
102 PRK10017 colanic acid biosynth 98.4 0.00084 1.8E-08 66.8 30.4 177 271-462 224-424 (426)
103 cd03791 GT1_Glycogen_synthase_ 98.4 0.00025 5.5E-09 72.4 25.7 137 281-422 295-442 (476)
104 TIGR02095 glgA glycogen/starch 98.3 0.00016 3.4E-09 73.8 23.1 134 281-421 290-436 (473)
105 TIGR02918 accessory Sec system 98.3 6.9E-05 1.5E-09 76.4 19.7 149 282-440 319-485 (500)
106 PRK01021 lpxB lipid-A-disaccha 98.3 0.00025 5.5E-09 72.0 23.3 164 269-439 401-589 (608)
107 COG0763 LpxB Lipid A disacchar 98.3 0.00016 3.5E-09 68.7 20.5 354 13-460 1-379 (381)
108 PLN02316 synthase/transferase 98.3 0.0015 3.2E-08 71.0 29.9 136 283-422 841-998 (1036)
109 PF02684 LpxB: Lipid-A-disacch 98.2 0.00024 5.1E-09 69.0 20.9 162 279-449 182-364 (373)
110 cd04950 GT1_like_1 Glycosyltra 98.2 0.0017 3.6E-08 64.1 26.7 123 283-423 206-341 (373)
111 PRK10125 putative glycosyl tra 98.2 0.0015 3.4E-08 65.0 26.0 115 284-417 243-366 (405)
112 PF00534 Glycos_transf_1: Glyc 98.2 2.7E-05 5.8E-10 67.6 11.5 137 279-423 12-159 (172)
113 PF02350 Epimerase_2: UDP-N-ac 98.1 1.5E-05 3.1E-10 77.4 10.5 131 279-423 178-319 (346)
114 cd04949 GT1_gtfA_like This fam 98.1 0.00027 5.9E-09 69.6 19.7 148 283-439 205-363 (372)
115 PF13844 Glyco_transf_41: Glyc 98.1 7.1E-05 1.5E-09 74.1 13.7 141 279-423 282-431 (468)
116 COG0381 WecB UDP-N-acetylgluco 98.1 0.0014 3E-08 62.7 21.4 139 279-433 202-349 (383)
117 cd03813 GT1_like_3 This family 98.1 0.0025 5.3E-08 65.1 25.2 83 335-423 352-443 (475)
118 PRK15484 lipopolysaccharide 1, 98.0 0.00023 5E-09 70.4 16.1 82 335-423 255-345 (380)
119 cd04946 GT1_AmsK_like This fam 98.0 0.00017 3.8E-09 72.0 14.9 132 281-423 229-378 (407)
120 PRK15490 Vi polysaccharide bio 98.0 0.0028 6E-08 64.3 22.8 126 283-416 399-532 (578)
121 COG5017 Uncharacterized conser 97.8 0.00021 4.5E-09 57.0 10.0 107 284-404 2-121 (161)
122 TIGR02193 heptsyl_trn_I lipopo 97.8 0.00032 6.9E-09 67.6 12.4 139 274-420 172-319 (319)
123 PLN02939 transferase, transfer 97.8 0.031 6.7E-07 60.2 27.6 135 283-421 780-930 (977)
124 PLN02501 digalactosyldiacylgly 97.7 0.0059 1.3E-07 63.1 21.0 76 338-423 602-682 (794)
125 PRK09814 beta-1,6-galactofuran 97.7 0.00072 1.6E-08 65.6 13.2 110 335-457 205-330 (333)
126 PF13692 Glyco_trans_1_4: Glyc 97.6 0.00014 3E-09 60.3 6.3 127 283-422 3-135 (135)
127 PRK10916 ADP-heptose:LPS hepto 97.5 0.0068 1.5E-07 59.2 17.6 103 14-139 1-106 (348)
128 cd01635 Glycosyltransferase_GT 97.5 0.013 2.9E-07 52.5 18.1 49 335-385 159-215 (229)
129 PHA01633 putative glycosyl tra 97.5 0.0015 3.2E-08 62.8 12.0 102 335-439 199-324 (335)
130 PRK10422 lipopolysaccharide co 97.4 0.015 3.3E-07 56.8 18.2 106 13-139 5-113 (352)
131 PRK10964 ADP-heptose:LPS hepto 97.3 0.013 2.9E-07 56.5 16.4 132 281-421 178-321 (322)
132 TIGR02201 heptsyl_trn_III lipo 97.3 0.012 2.6E-07 57.3 16.2 105 15-139 1-108 (344)
133 COG0859 RfaF ADP-heptose:LPS h 97.3 0.038 8.2E-07 53.5 19.1 105 13-139 1-107 (334)
134 COG1817 Uncharacterized protei 97.2 0.19 4E-06 46.7 21.0 110 15-144 2-114 (346)
135 TIGR02195 heptsyl_trn_II lipop 97.1 0.066 1.4E-06 51.9 19.0 101 15-138 1-104 (334)
136 PF06722 DUF1205: Protein of u 96.9 0.001 2.2E-08 51.2 3.8 65 269-340 28-97 (97)
137 PRK14098 glycogen synthase; Pr 96.9 0.024 5.2E-07 58.0 14.2 131 282-420 307-449 (489)
138 COG3914 Spy Predicted O-linked 96.7 0.02 4.3E-07 57.3 11.7 122 279-405 427-561 (620)
139 PF13477 Glyco_trans_4_2: Glyc 96.6 0.02 4.3E-07 47.5 9.6 103 15-142 1-107 (139)
140 KOG4626 O-linked N-acetylgluco 96.5 0.029 6.3E-07 56.4 11.4 152 279-441 756-917 (966)
141 PHA01630 putative group 1 glyc 96.3 0.16 3.5E-06 49.1 15.2 93 343-439 196-311 (331)
142 cd03789 GT1_LPS_heptosyltransf 96.2 0.27 5.8E-06 46.2 15.9 102 15-139 1-105 (279)
143 PF06258 Mito_fiss_Elm1: Mitoc 95.6 0.84 1.8E-05 43.5 16.3 57 346-405 221-281 (311)
144 PF13524 Glyco_trans_1_2: Glyc 95.6 0.094 2E-06 39.9 8.1 83 362-457 9-91 (92)
145 PF13579 Glyco_trans_4_4: Glyc 95.3 0.051 1.1E-06 45.7 6.5 98 28-142 5-104 (160)
146 TIGR03713 acc_sec_asp1 accesso 95.1 0.16 3.5E-06 52.2 10.5 92 337-440 409-507 (519)
147 PF01975 SurE: Survival protei 95.1 0.056 1.2E-06 47.7 6.2 118 14-144 1-135 (196)
148 TIGR02400 trehalose_OtsA alpha 94.6 0.37 8.1E-06 48.7 11.4 104 342-461 341-455 (456)
149 COG0438 RfaG Glycosyltransfera 93.9 3.2 6.9E-05 39.2 16.2 81 336-423 256-343 (381)
150 PF10093 DUF2331: Uncharacteri 93.6 7.5 0.00016 37.8 22.5 48 338-392 245-297 (374)
151 PF04464 Glyphos_transf: CDP-G 93.2 0.19 4.1E-06 49.4 6.3 141 299-456 219-367 (369)
152 PRK14099 glycogen synthase; Pr 92.9 1.5 3.2E-05 44.9 12.3 134 283-423 296-448 (485)
153 PF12000 Glyco_trans_4_3: Gkyc 92.9 1.2 2.6E-05 38.3 9.7 96 39-143 1-97 (171)
154 cd02067 B12-binding B12 bindin 91.9 0.87 1.9E-05 36.5 7.5 39 15-53 1-39 (119)
155 PF13439 Glyco_transf_4: Glyco 91.6 0.92 2E-05 38.6 7.9 35 23-57 11-45 (177)
156 COG4370 Uncharacterized protei 91.1 0.87 1.9E-05 42.2 7.2 91 337-433 294-387 (412)
157 PF05159 Capsule_synth: Capsul 91.0 1.8 3.9E-05 40.4 9.8 83 298-383 142-226 (269)
158 COG2099 CobK Precorrin-6x redu 90.7 13 0.00028 33.9 16.0 91 13-140 2-99 (257)
159 cd03788 GT1_TPS Trehalose-6-Ph 90.2 1.2 2.5E-05 45.4 8.2 104 341-460 345-459 (460)
160 TIGR02919 accessory Sec system 90.0 4.3 9.2E-05 40.8 11.7 138 280-438 282-425 (438)
161 PRK02261 methylaspartate mutas 89.9 1.3 2.7E-05 36.7 6.7 46 11-56 1-46 (137)
162 KOG2941 Beta-1,4-mannosyltrans 89.8 19 0.00041 34.4 27.0 133 279-422 252-405 (444)
163 PF08660 Alg14: Oligosaccharid 89.7 2.2 4.9E-05 36.7 8.3 113 19-143 3-130 (170)
164 PRK13932 stationary phase surv 89.7 8.8 0.00019 35.4 12.5 116 12-142 4-133 (257)
165 cd03793 GT1_Glycogen_synthase_ 89.5 0.95 2.1E-05 46.5 6.7 73 346-423 467-553 (590)
166 TIGR00087 surE 5'/3'-nucleotid 89.3 7.3 0.00016 35.7 11.8 114 14-142 1-128 (244)
167 PF02374 ArsA_ATPase: Anion-tr 89.2 0.77 1.7E-05 43.8 5.6 41 14-54 1-42 (305)
168 PLN03063 alpha,alpha-trehalose 89.1 1.4 3.1E-05 47.9 8.2 104 344-463 363-478 (797)
169 COG0003 ArsA Predicted ATPase 89.0 3.2 6.9E-05 39.7 9.6 123 13-139 1-149 (322)
170 COG1618 Predicted nucleotide k 88.9 0.53 1.2E-05 39.6 3.7 56 13-72 5-60 (179)
171 PRK13933 stationary phase surv 88.4 9.6 0.00021 35.1 11.9 41 14-56 1-41 (253)
172 TIGR00715 precor6x_red precorr 87.6 4.7 0.0001 37.3 9.5 38 14-56 1-38 (256)
173 PRK13935 stationary phase surv 87.1 14 0.00029 34.1 12.0 41 14-56 1-41 (253)
174 PF02951 GSH-S_N: Prokaryotic 87.1 1.1 2.5E-05 35.8 4.5 40 14-53 1-43 (119)
175 COG2894 MinD Septum formation 86.7 3.6 7.9E-05 36.6 7.6 41 14-54 2-44 (272)
176 COG0496 SurE Predicted acid ph 85.5 7.1 0.00015 35.7 9.2 42 14-57 1-42 (252)
177 PRK13934 stationary phase surv 85.4 20 0.00043 33.3 12.2 41 14-56 1-41 (266)
178 PF02441 Flavoprotein: Flavopr 85.3 1 2.3E-05 36.7 3.6 43 14-57 1-43 (129)
179 PRK02155 ppnK NAD(+)/NADH kina 84.6 7 0.00015 36.9 9.2 96 296-422 20-119 (291)
180 PRK00346 surE 5'(3')-nucleotid 84.1 21 0.00046 32.8 11.8 110 14-142 1-124 (250)
181 cd02070 corrinoid_protein_B12- 84.0 5.8 0.00013 35.2 8.1 104 12-136 81-186 (201)
182 cd01425 RPS2 Ribosomal protein 84.0 4.5 9.7E-05 35.7 7.2 118 25-144 40-160 (193)
183 PRK14501 putative bifunctional 83.9 5.8 0.00013 42.9 9.5 109 340-463 345-463 (726)
184 PF01075 Glyco_transf_9: Glyco 83.3 1.6 3.4E-05 40.1 4.3 98 279-381 103-208 (247)
185 COG3660 Predicted nucleoside-d 82.2 41 0.0009 31.0 20.4 37 343-381 234-271 (329)
186 PRK14077 pnk inorganic polypho 80.2 10 0.00022 35.8 8.4 57 349-422 60-120 (287)
187 PF02571 CbiJ: Precorrin-6x re 80.1 7 0.00015 36.0 7.2 38 14-57 1-38 (249)
188 TIGR02370 pyl_corrinoid methyl 79.6 9 0.00019 33.9 7.6 104 12-136 83-188 (197)
189 PRK08305 spoVFB dipicolinate s 78.6 2.7 5.9E-05 36.9 3.8 46 12-57 4-49 (196)
190 cd02071 MM_CoA_mut_B12_BD meth 78.4 13 0.00028 29.9 7.6 42 15-56 1-42 (122)
191 PRK01077 cobyrinic acid a,c-di 78.2 12 0.00026 37.9 8.9 108 14-144 4-124 (451)
192 cd00550 ArsA_ATPase Oxyanion-t 78.1 8.3 0.00018 35.6 7.2 38 15-52 1-39 (254)
193 COG2910 Putative NADH-flavin r 77.5 2.7 6E-05 36.2 3.4 35 14-53 1-36 (211)
194 COG4394 Uncharacterized protei 77.3 60 0.0013 30.2 11.9 45 337-384 238-287 (370)
195 PF12146 Hydrolase_4: Putative 77.1 6.2 0.00013 29.0 4.9 34 14-47 16-49 (79)
196 PRK04539 ppnK inorganic polyph 76.7 18 0.00039 34.2 9.1 58 348-422 63-124 (296)
197 COG0132 BioD Dethiobiotin synt 76.4 41 0.0009 30.3 10.7 37 13-49 1-39 (223)
198 PRK05986 cob(I)alamin adenolsy 76.1 34 0.00073 30.0 9.9 100 12-124 21-126 (191)
199 TIGR02398 gluc_glyc_Psyn gluco 76.1 65 0.0014 32.9 13.3 108 339-462 364-482 (487)
200 PRK03372 ppnK inorganic polyph 76.0 20 0.00043 34.1 9.1 57 349-422 68-128 (306)
201 PRK13931 stationary phase surv 75.9 53 0.0012 30.4 11.7 112 14-142 1-129 (261)
202 PF04127 DFP: DNA / pantothena 75.5 2.2 4.7E-05 37.3 2.4 39 13-51 3-53 (185)
203 cd00561 CobA_CobO_BtuR ATP:cor 74.7 35 0.00075 29.0 9.4 97 15-124 4-106 (159)
204 PRK04885 ppnK inorganic polyph 74.4 6.2 0.00013 36.7 5.2 53 353-422 35-93 (265)
205 PRK05920 aromatic acid decarbo 73.7 3.7 8.1E-05 36.4 3.4 45 12-57 2-46 (204)
206 PLN02929 NADH kinase 73.5 17 0.00036 34.4 7.8 96 296-422 33-137 (301)
207 PF00731 AIRC: AIR carboxylase 73.2 55 0.0012 27.5 10.4 136 283-441 2-148 (150)
208 KOG1111 N-acetylglucosaminyltr 73.0 29 0.00062 33.5 9.1 84 295-381 209-301 (426)
209 TIGR00708 cobA cob(I)alamin ad 72.2 30 0.00064 29.8 8.4 96 15-124 7-108 (173)
210 smart00851 MGS MGS-like domain 71.7 27 0.00059 26.2 7.4 79 30-138 2-89 (90)
211 PRK05973 replicative DNA helic 71.6 12 0.00026 34.1 6.3 42 16-57 67-108 (237)
212 KOG1250 Threonine/serine dehyd 71.3 57 0.0012 31.9 10.7 62 359-423 248-317 (457)
213 cd07039 TPP_PYR_POX Pyrimidine 71.1 33 0.00072 29.2 8.6 29 353-383 63-97 (164)
214 PRK07313 phosphopantothenoylcy 70.6 5.1 0.00011 34.9 3.5 44 13-57 1-44 (182)
215 COG0052 RpsB Ribosomal protein 70.6 19 0.00042 32.6 7.1 113 30-144 53-189 (252)
216 TIGR00347 bioD dethiobiotin sy 70.3 15 0.00033 31.2 6.4 27 21-47 6-32 (166)
217 TIGR00725 conserved hypothetic 69.9 40 0.00087 28.6 8.8 100 268-384 20-124 (159)
218 PRK01231 ppnK inorganic polyph 69.9 33 0.00072 32.5 9.1 96 296-422 19-118 (295)
219 PRK12311 rpsB 30S ribosomal pr 69.6 9.6 0.00021 36.5 5.4 32 113-144 152-185 (326)
220 PRK02649 ppnK inorganic polyph 69.6 10 0.00023 36.0 5.6 57 349-422 64-124 (305)
221 PRK01911 ppnK inorganic polyph 69.5 11 0.00024 35.6 5.8 57 349-422 60-120 (292)
222 PF06925 MGDG_synth: Monogalac 69.1 7 0.00015 33.5 4.1 24 26-49 1-25 (169)
223 PF07015 VirC1: VirC1 protein; 69.1 8.5 0.00018 34.7 4.6 42 16-57 4-46 (231)
224 PRK02797 4-alpha-L-fucosyltran 69.0 1.1E+02 0.0023 29.2 11.8 76 337-418 206-290 (322)
225 PRK13982 bifunctional SbtC-lik 68.4 11 0.00023 38.2 5.7 55 11-71 254-320 (475)
226 PF09314 DUF1972: Domain of un 67.5 67 0.0015 28.0 9.7 41 29-71 22-62 (185)
227 PRK06732 phosphopantothenate-- 67.4 11 0.00025 34.1 5.3 31 18-50 19-49 (229)
228 PRK00090 bioD dithiobiotin syn 66.5 33 0.00072 30.7 8.2 33 16-48 2-35 (222)
229 KOG0853 Glycosyltransferase [C 66.1 3.2 7E-05 41.8 1.5 59 367-434 381-442 (495)
230 PF04413 Glycos_transf_N: 3-De 66.1 9 0.0002 33.5 4.2 100 15-142 22-126 (186)
231 COG1066 Sms Predicted ATP-depe 66.0 13 0.00028 36.5 5.4 104 15-143 95-219 (456)
232 PF10649 DUF2478: Protein of u 66.0 68 0.0015 27.2 9.2 121 17-144 2-133 (159)
233 COG1663 LpxK Tetraacyldisaccha 65.9 15 0.00033 35.0 5.8 35 19-53 55-89 (336)
234 PF06564 YhjQ: YhjQ protein; 65.8 72 0.0016 29.2 10.0 36 15-50 3-39 (243)
235 cd02069 methionine_synthase_B1 65.4 24 0.00052 31.6 6.8 45 12-56 87-131 (213)
236 TIGR03029 EpsG chain length de 65.2 89 0.0019 29.0 11.1 38 13-50 102-141 (274)
237 PRK14098 glycogen synthase; Pr 65.0 11 0.00023 38.7 5.2 40 11-50 3-48 (489)
238 PRK02231 ppnK inorganic polyph 65.0 12 0.00026 35.0 4.9 60 346-422 35-98 (272)
239 PRK08057 cobalt-precorrin-6x r 64.7 5.9 0.00013 36.4 2.8 37 13-54 2-38 (248)
240 PF02310 B12-binding: B12 bind 64.7 14 0.0003 29.4 4.8 37 15-51 2-38 (121)
241 PRK06718 precorrin-2 dehydroge 64.7 67 0.0014 28.5 9.5 146 279-442 9-165 (202)
242 PRK06029 3-octaprenyl-4-hydrox 64.4 7.3 0.00016 34.0 3.2 44 13-57 1-45 (185)
243 PRK03378 ppnK inorganic polyph 64.1 15 0.00034 34.6 5.6 58 348-422 58-119 (292)
244 COG0541 Ffh Signal recognition 63.7 37 0.00079 33.7 8.0 44 13-56 100-143 (451)
245 PRK05632 phosphate acetyltrans 63.5 76 0.0016 34.2 11.3 102 15-144 4-116 (684)
246 PRK14099 glycogen synthase; Pr 63.1 12 0.00025 38.4 5.0 39 12-50 2-46 (485)
247 PF03796 DnaB_C: DnaB-like hel 62.4 7.9 0.00017 35.8 3.4 125 16-143 22-179 (259)
248 PRK06079 enoyl-(acyl carrier p 62.1 26 0.00057 32.1 6.8 33 15-49 8-41 (252)
249 PRK06179 short chain dehydroge 61.6 37 0.00079 31.3 7.8 32 16-50 6-37 (270)
250 PRK06904 replicative DNA helic 61.5 28 0.00061 35.5 7.3 124 16-142 224-382 (472)
251 cd01423 MGS_CPS_I_III Methylgl 61.4 41 0.00088 26.6 6.9 94 18-139 4-106 (116)
252 PF05014 Nuc_deoxyrib_tr: Nucl 60.8 8.2 0.00018 30.5 2.7 93 284-387 1-101 (113)
253 PRK09620 hypothetical protein; 60.8 22 0.00048 32.2 5.8 39 13-51 3-53 (229)
254 TIGR00379 cobB cobyrinic acid 60.8 51 0.0011 33.4 9.0 106 16-144 2-120 (449)
255 PF02142 MGS: MGS-like domain 60.6 11 0.00024 28.7 3.3 84 30-138 2-94 (95)
256 COG2861 Uncharacterized protei 60.4 55 0.0012 29.7 7.9 43 93-139 133-178 (250)
257 TIGR02852 spore_dpaB dipicolin 60.4 11 0.00025 32.8 3.7 40 15-54 2-41 (187)
258 PRK12446 undecaprenyldiphospho 60.2 45 0.00097 32.5 8.3 42 353-397 91-135 (352)
259 cd07035 TPP_PYR_POX_like Pyrim 60.1 39 0.00084 28.2 7.0 29 353-383 59-93 (155)
260 cd02037 MRP-like MRP (Multiple 60.1 38 0.00083 28.8 7.0 34 19-52 6-39 (169)
261 cd07038 TPP_PYR_PDC_IPDC_like 59.7 26 0.00056 29.8 5.8 29 353-383 59-93 (162)
262 PRK02645 ppnK inorganic polyph 59.5 32 0.00069 32.8 6.9 68 296-383 18-89 (305)
263 PRK13234 nifH nitrogenase redu 59.2 17 0.00038 34.4 5.1 40 13-52 3-43 (295)
264 COG1484 DnaC DNA replication p 59.2 11 0.00024 34.8 3.7 46 12-57 104-149 (254)
265 PRK01185 ppnK inorganic polyph 59.0 21 0.00045 33.3 5.4 53 353-422 52-105 (271)
266 PLN02935 Bifunctional NADH kin 58.9 20 0.00043 36.4 5.5 56 350-422 259-318 (508)
267 PRK13789 phosphoribosylamine-- 58.6 29 0.00063 34.8 6.8 37 12-53 3-39 (426)
268 PF06506 PrpR_N: Propionate ca 58.6 40 0.00087 29.1 6.9 110 25-143 17-152 (176)
269 PF00862 Sucrose_synth: Sucros 58.5 13 0.00027 37.6 4.0 114 25-144 297-434 (550)
270 PF10083 DUF2321: Uncharacteri 58.3 16 0.00035 30.4 4.0 80 373-463 73-152 (158)
271 PRK10867 signal recognition pa 58.1 56 0.0012 32.8 8.6 42 15-56 102-144 (433)
272 cd01974 Nitrogenase_MoFe_beta 57.5 75 0.0016 32.0 9.6 95 12-141 302-402 (435)
273 PRK11914 diacylglycerol kinase 57.2 23 0.00049 33.7 5.6 81 283-383 12-96 (306)
274 PRK05647 purN phosphoribosylgl 56.9 47 0.001 29.4 7.1 56 13-71 1-58 (200)
275 COG0552 FtsY Signal recognitio 56.8 49 0.0011 31.6 7.4 43 15-57 141-183 (340)
276 PRK06849 hypothetical protein; 56.6 22 0.00047 35.2 5.5 36 12-51 3-38 (389)
277 COG0300 DltE Short-chain dehyd 56.6 68 0.0015 29.8 8.2 70 31-123 20-94 (265)
278 PRK03501 ppnK inorganic polyph 56.3 23 0.0005 32.9 5.2 53 354-422 40-97 (264)
279 COG2185 Sbm Methylmalonyl-CoA 56.1 20 0.00043 29.7 4.2 41 11-51 10-50 (143)
280 CHL00072 chlL photochlorophyll 55.9 21 0.00045 33.8 5.0 40 14-53 1-40 (290)
281 COG1763 MobB Molybdopterin-gua 55.4 25 0.00053 29.9 4.8 40 13-52 1-41 (161)
282 PF00289 CPSase_L_chain: Carba 55.3 21 0.00046 28.1 4.2 70 295-372 10-89 (110)
283 PF01210 NAD_Gly3P_dh_N: NAD-d 55.3 7.8 0.00017 32.8 1.8 32 15-51 1-32 (157)
284 TIGR03600 phage_DnaB phage rep 54.9 34 0.00074 34.3 6.7 41 16-56 197-238 (421)
285 PLN02470 acetolactate synthase 54.7 24 0.00052 37.1 5.7 80 299-382 16-109 (585)
286 PRK08506 replicative DNA helic 54.5 53 0.0012 33.5 8.0 124 16-142 195-350 (472)
287 PRK05579 bifunctional phosphop 54.5 16 0.00035 36.2 4.1 47 10-57 3-49 (399)
288 PRK14075 pnk inorganic polypho 54.4 28 0.00061 32.2 5.5 53 353-422 41-94 (256)
289 PRK07313 phosphopantothenoylcy 54.1 1.4E+02 0.0031 25.9 9.6 131 283-420 4-178 (182)
290 COG1171 IlvA Threonine dehydra 54.0 98 0.0021 30.0 9.1 30 115-144 75-107 (347)
291 PRK12342 hypothetical protein; 53.9 22 0.00049 32.7 4.7 30 114-143 110-145 (254)
292 COG1797 CobB Cobyrinic acid a, 53.8 22 0.00047 35.3 4.7 33 15-47 2-35 (451)
293 PRK10416 signal recognition pa 53.5 71 0.0015 30.6 8.2 40 14-53 115-154 (318)
294 TIGR01281 DPOR_bchL light-inde 53.5 22 0.00048 33.0 4.8 37 14-50 1-37 (268)
295 cd01424 MGS_CPS_II Methylglyox 53.5 79 0.0017 24.6 7.3 84 25-139 10-100 (110)
296 cd02032 Bchl_like This family 53.4 22 0.00047 33.0 4.7 38 14-51 1-38 (267)
297 TIGR02113 coaC_strep phosphopa 53.4 15 0.00033 31.8 3.3 42 15-57 2-43 (177)
298 TIGR02195 heptsyl_trn_II lipop 53.4 92 0.002 29.9 9.2 86 27-142 193-278 (334)
299 TIGR00730 conserved hypothetic 53.3 1.1E+02 0.0024 26.5 8.6 101 268-382 21-133 (178)
300 cd01965 Nitrogenase_MoFe_beta_ 53.3 71 0.0015 32.1 8.6 99 12-141 298-396 (428)
301 TIGR00345 arsA arsenite-activa 53.2 43 0.00094 31.5 6.7 24 31-54 3-26 (284)
302 COG0801 FolK 7,8-dihydro-6-hyd 53.2 27 0.00059 29.5 4.7 29 283-311 3-31 (160)
303 PRK13057 putative lipid kinase 53.1 28 0.00061 32.8 5.4 66 297-383 13-82 (287)
304 PRK08006 replicative DNA helic 52.8 52 0.0011 33.5 7.5 124 16-142 227-384 (471)
305 PRK13055 putative lipid kinase 52.3 49 0.0011 32.0 7.1 82 283-383 6-93 (334)
306 PRK00784 cobyric acid synthase 52.2 61 0.0013 33.2 8.0 35 15-49 4-39 (488)
307 TIGR02015 BchY chlorophyllide 52.1 86 0.0019 31.5 8.9 33 14-51 286-318 (422)
308 TIGR00640 acid_CoA_mut_C methy 52.0 43 0.00093 27.4 5.6 59 13-71 2-60 (132)
309 TIGR00661 MJ1255 conserved hyp 51.7 34 0.00073 32.8 5.8 28 353-382 93-120 (321)
310 PRK09739 hypothetical protein; 51.4 38 0.00082 29.9 5.7 37 12-48 2-41 (199)
311 cd01421 IMPCH Inosine monophos 51.4 45 0.00098 29.0 5.8 38 28-71 11-48 (187)
312 cd07037 TPP_PYR_MenD Pyrimidin 51.2 31 0.00067 29.4 4.8 29 353-383 60-94 (162)
313 TIGR00421 ubiX_pad polyprenyl 51.1 13 0.00028 32.3 2.6 42 15-57 1-42 (181)
314 KOG0780 Signal recognition par 51.0 67 0.0015 31.5 7.3 41 16-56 104-144 (483)
315 PF06418 CTP_synth_N: CTP synt 50.8 96 0.0021 28.7 8.0 58 14-71 1-63 (276)
316 cd01980 Chlide_reductase_Y Chl 50.6 69 0.0015 32.1 8.0 32 15-51 282-313 (416)
317 PRK13185 chlL protochlorophyll 50.6 27 0.00059 32.4 4.9 36 15-50 3-39 (270)
318 PRK03359 putative electron tra 50.6 28 0.0006 32.2 4.8 30 114-143 113-148 (256)
319 PRK03708 ppnK inorganic polyph 50.4 28 0.00061 32.6 4.9 94 296-422 15-112 (277)
320 PF07429 Glyco_transf_56: 4-al 50.3 2.5E+02 0.0054 27.3 11.4 80 337-421 245-332 (360)
321 PRK14076 pnk inorganic polypho 50.2 29 0.00063 36.3 5.4 53 353-422 348-404 (569)
322 TIGR03609 S_layer_CsaB polysac 50.1 1.1E+02 0.0023 28.9 9.0 112 280-400 171-290 (298)
323 PRK12823 benD 1,6-dihydroxycyc 50.0 44 0.00096 30.5 6.2 20 31-50 22-41 (260)
324 COG2120 Uncharacterized protei 49.9 31 0.00066 31.5 4.9 42 7-49 4-46 (237)
325 TIGR01425 SRP54_euk signal rec 49.7 93 0.002 31.2 8.5 40 15-54 102-141 (429)
326 COG2874 FlaH Predicted ATPases 49.4 88 0.0019 28.0 7.3 36 16-51 31-66 (235)
327 PRK13059 putative lipid kinase 49.0 48 0.001 31.3 6.3 67 296-383 18-90 (295)
328 PF05225 HTH_psq: helix-turn-h 48.8 28 0.00061 22.4 3.2 26 408-435 1-26 (45)
329 TIGR02329 propionate_PrpR prop 48.2 1E+02 0.0023 31.9 8.9 110 25-143 37-172 (526)
330 cd00984 DnaB_C DnaB helicase C 48.0 97 0.0021 28.0 8.1 42 16-57 16-58 (242)
331 TIGR01285 nifN nitrogenase mol 47.8 93 0.002 31.3 8.4 87 13-140 311-397 (432)
332 PRK08840 replicative DNA helic 47.5 61 0.0013 33.0 7.1 124 16-142 220-377 (464)
333 PRK06249 2-dehydropantoate 2-r 47.3 27 0.00059 33.4 4.4 48 12-69 4-51 (313)
334 TIGR02700 flavo_MJ0208 archaeo 47.3 23 0.0005 32.2 3.7 43 15-57 1-45 (234)
335 PRK05595 replicative DNA helic 47.2 78 0.0017 32.0 7.8 41 16-56 204-245 (444)
336 cd00532 MGS-like MGS-like doma 47.2 1E+02 0.0022 24.3 6.9 85 26-139 10-104 (112)
337 TIGR00173 menD 2-succinyl-5-en 47.1 61 0.0013 32.6 7.1 27 353-381 63-95 (432)
338 TIGR00959 ffh signal recogniti 46.3 93 0.002 31.3 8.0 40 16-55 102-142 (428)
339 COG3195 Uncharacterized protei 46.2 80 0.0017 26.7 6.2 73 366-440 88-164 (176)
340 PRK08155 acetolactate synthase 45.9 49 0.0011 34.6 6.4 79 298-382 15-109 (564)
341 cd01452 VWA_26S_proteasome_sub 45.9 88 0.0019 27.4 6.9 61 12-72 106-174 (187)
342 PRK06935 2-deoxy-D-gluconate 3 45.6 60 0.0013 29.7 6.4 33 15-50 16-48 (258)
343 COG0859 RfaF ADP-heptose:LPS h 45.3 1E+02 0.0022 29.7 8.1 100 14-144 176-280 (334)
344 COG1748 LYS9 Saccharopine dehy 45.1 90 0.0019 30.8 7.5 53 13-71 1-55 (389)
345 PLN03064 alpha,alpha-trehalose 44.6 2.4E+02 0.0052 31.5 11.3 105 343-463 446-562 (934)
346 PRK06194 hypothetical protein; 44.4 87 0.0019 29.1 7.4 20 31-50 20-39 (287)
347 cd01715 ETF_alpha The electron 44.2 82 0.0018 26.8 6.5 29 114-142 84-115 (168)
348 TIGR01470 cysG_Nterm siroheme 43.7 49 0.0011 29.4 5.2 145 279-441 8-164 (205)
349 PF02776 TPP_enzyme_N: Thiamin 43.4 41 0.00089 28.8 4.5 29 352-382 63-97 (172)
350 TIGR01011 rpsB_bact ribosomal 43.4 69 0.0015 29.0 6.0 32 113-144 155-188 (225)
351 PRK08760 replicative DNA helic 43.2 1.1E+02 0.0023 31.4 8.0 41 16-56 232-273 (476)
352 CHL00067 rps2 ribosomal protei 42.8 77 0.0017 28.8 6.3 33 112-144 160-194 (230)
353 cd02040 NifH NifH gene encodes 42.7 43 0.00093 31.0 4.9 38 15-52 3-40 (270)
354 PRK13337 putative lipid kinase 42.4 81 0.0018 29.9 6.8 68 296-383 18-91 (304)
355 COG2109 BtuR ATP:corrinoid ade 42.3 2.4E+02 0.0052 24.8 8.7 98 16-124 31-133 (198)
356 TIGR02699 archaeo_AfpA archaeo 42.3 26 0.00057 30.2 3.0 42 15-57 1-44 (174)
357 PRK06463 fabG 3-ketoacyl-(acyl 42.2 89 0.0019 28.4 6.9 19 31-49 21-39 (255)
358 COG2327 WcaK Polysaccharide py 42.2 1.2E+02 0.0026 29.8 7.8 87 336-431 265-357 (385)
359 COG2099 CobK Precorrin-6x redu 42.2 42 0.00091 30.7 4.4 107 30-141 117-229 (257)
360 TIGR03837 efp_adjacent_2 conse 42.1 3.4E+02 0.0074 26.5 12.1 48 338-392 243-295 (371)
361 TIGR00521 coaBC_dfp phosphopan 42.0 25 0.00054 34.8 3.2 45 12-57 2-46 (390)
362 PRK05299 rpsB 30S ribosomal pr 41.9 71 0.0015 29.6 6.0 32 113-144 157-190 (258)
363 COG1492 CobQ Cobyric acid synt 41.9 1.9E+02 0.0041 29.4 9.2 58 82-142 97-165 (486)
364 TIGR00147 lipid kinase, YegS/R 41.8 82 0.0018 29.6 6.7 81 283-383 5-91 (293)
365 PF01695 IstB_IS21: IstB-like 41.7 26 0.00056 30.4 3.0 45 13-57 47-91 (178)
366 TIGR02302 aProt_lowcomp conser 41.6 77 0.0017 34.7 7.0 58 406-464 473-536 (851)
367 PRK13768 GTPase; Provisional 41.6 1E+02 0.0023 28.3 7.2 39 14-52 2-41 (253)
368 PRK07206 hypothetical protein; 41.5 1.2E+02 0.0026 30.1 8.2 32 15-51 4-35 (416)
369 PRK11519 tyrosine kinase; Prov 41.5 2.6E+02 0.0056 30.4 11.1 40 13-52 525-566 (719)
370 cd01985 ETF The electron trans 41.4 57 0.0012 28.1 5.2 27 114-140 92-121 (181)
371 PRK12921 2-dehydropantoate 2-r 41.3 29 0.00063 32.8 3.6 39 14-57 1-39 (305)
372 TIGR00682 lpxK tetraacyldisacc 41.2 76 0.0016 30.3 6.3 35 19-53 36-70 (311)
373 PRK13236 nitrogenase reductase 41.0 45 0.00098 31.6 4.8 40 14-53 6-46 (296)
374 COG1703 ArgK Putative periplas 41.0 67 0.0015 30.3 5.6 44 12-55 50-93 (323)
375 PF05693 Glycogen_syn: Glycoge 40.8 31 0.00067 35.9 3.7 92 345-439 461-566 (633)
376 cd03146 GAT1_Peptidase_E Type 40.7 2E+02 0.0044 25.5 8.7 47 268-316 17-66 (212)
377 PRK05784 phosphoribosylamine-- 40.3 1.3E+02 0.0029 30.7 8.3 34 14-52 1-36 (486)
378 cd03466 Nitrogenase_NifN_2 Nit 40.3 1.2E+02 0.0026 30.5 7.9 24 114-140 373-396 (429)
379 PRK03767 NAD(P)H:quinone oxido 40.2 53 0.0012 29.0 4.8 37 14-50 2-40 (200)
380 PRK00207 sulfur transfer compl 40.1 68 0.0015 26.1 5.0 40 14-53 1-44 (128)
381 cd01121 Sms Sms (bacterial rad 39.9 62 0.0014 31.8 5.6 41 16-56 85-125 (372)
382 PRK13278 purP 5-formaminoimida 39.9 2.2E+02 0.0048 27.8 9.3 119 269-401 5-137 (358)
383 PRK08322 acetolactate synthase 39.7 65 0.0014 33.5 6.1 28 353-382 63-96 (547)
384 PRK07710 acetolactate synthase 39.5 56 0.0012 34.3 5.6 28 353-382 78-111 (571)
385 PRK04761 ppnK inorganic polyph 39.5 26 0.00057 32.1 2.8 28 354-383 26-57 (246)
386 PRK07004 replicative DNA helic 39.3 1.2E+02 0.0026 30.8 7.8 41 16-56 216-257 (460)
387 PLN02695 GDP-D-mannose-3',5'-e 39.3 68 0.0015 31.4 5.9 35 12-50 20-54 (370)
388 PRK11823 DNA repair protein Ra 39.3 70 0.0015 32.4 6.0 41 16-56 83-123 (446)
389 cd02034 CooC The accessory pro 39.2 70 0.0015 25.4 4.9 37 15-51 1-37 (116)
390 PF03721 UDPG_MGDP_dh_N: UDP-g 39.1 53 0.0012 28.6 4.6 33 14-51 1-33 (185)
391 CHL00194 ycf39 Ycf39; Provisio 38.9 49 0.0011 31.6 4.7 33 14-50 1-33 (317)
392 PF13460 NAD_binding_10: NADH( 38.9 41 0.0009 28.8 3.9 89 20-144 3-99 (183)
393 PRK06841 short chain dehydroge 38.7 96 0.0021 28.1 6.6 36 12-51 14-49 (255)
394 PLN02727 NAD kinase 38.6 62 0.0013 35.5 5.6 57 349-422 739-799 (986)
395 KOG0202 Ca2+ transporting ATPa 38.6 3.9E+02 0.0084 29.3 11.1 167 280-463 570-750 (972)
396 PF06506 PrpR_N: Propionate ca 38.5 20 0.00044 30.9 1.8 31 352-385 33-63 (176)
397 TIGR00118 acolac_lg acetolacta 38.5 1.1E+02 0.0024 31.9 7.7 28 353-382 64-97 (558)
398 PRK12825 fabG 3-ketoacyl-(acyl 38.4 69 0.0015 28.7 5.5 37 11-51 4-40 (249)
399 PRK06988 putative formyltransf 38.3 1.5E+02 0.0033 28.3 7.9 33 13-50 2-34 (312)
400 PRK06522 2-dehydropantoate 2-r 38.0 30 0.00064 32.7 3.1 31 14-49 1-31 (304)
401 PRK13230 nitrogenase reductase 38.0 57 0.0012 30.5 5.0 38 15-52 3-40 (279)
402 TIGR00639 PurN phosphoribosylg 38.0 2.1E+02 0.0045 25.1 8.1 51 14-71 1-57 (190)
403 PRK13604 luxD acyl transferase 37.8 73 0.0016 30.3 5.5 36 13-48 36-71 (307)
404 PRK13982 bifunctional SbtC-lik 37.6 40 0.00088 34.2 4.0 46 11-57 68-113 (475)
405 TIGR01283 nifE nitrogenase mol 37.1 1.6E+02 0.0036 29.8 8.4 34 12-50 325-358 (456)
406 PRK13054 lipid kinase; Reviewe 37.0 83 0.0018 29.8 5.9 68 297-384 18-93 (300)
407 TIGR00750 lao LAO/AO transport 37.0 2E+02 0.0044 27.2 8.6 41 13-53 33-74 (300)
408 cd01840 SGNH_hydrolase_yrhL_li 36.9 1.1E+02 0.0024 25.3 6.1 47 271-318 41-87 (150)
409 cd03114 ArgK-like The function 36.9 2.5E+02 0.0053 23.3 10.3 36 16-51 2-37 (148)
410 PRK13869 plasmid-partitioning 36.8 55 0.0012 32.6 4.8 39 13-51 120-160 (405)
411 PRK06756 flavodoxin; Provision 36.7 67 0.0014 26.6 4.7 36 14-49 2-38 (148)
412 PLN00016 RNA-binding protein; 36.7 50 0.0011 32.4 4.5 37 13-51 52-90 (378)
413 PF07905 PucR: Purine cataboli 36.6 1.7E+02 0.0036 23.5 6.8 55 269-327 34-89 (123)
414 PRK07525 sulfoacetaldehyde ace 36.5 1.2E+02 0.0026 31.9 7.6 28 353-382 68-101 (588)
415 TIGR01007 eps_fam capsular exo 36.4 82 0.0018 27.7 5.5 40 14-53 17-58 (204)
416 PRK13011 formyltetrahydrofolat 36.4 2.2E+02 0.0048 26.8 8.5 111 8-143 84-196 (286)
417 PF13779 DUF4175: Domain of un 36.4 99 0.0021 33.9 6.8 58 406-464 442-505 (820)
418 PRK04946 hypothetical protein; 36.4 19 0.00041 31.3 1.2 59 296-368 109-168 (181)
419 PRK06276 acetolactate synthase 36.3 1.2E+02 0.0026 31.9 7.5 28 353-382 63-96 (586)
420 PRK10916 ADP-heptose:LPS hepto 36.3 46 0.001 32.3 4.1 89 28-142 200-288 (348)
421 PRK08589 short chain dehydroge 36.1 97 0.0021 28.6 6.2 33 15-50 7-39 (272)
422 PRK06719 precorrin-2 dehydroge 35.7 48 0.001 28.0 3.6 36 10-50 10-45 (157)
423 PRK13695 putative NTPase; Prov 35.7 1.9E+02 0.0041 24.6 7.5 32 14-45 1-32 (174)
424 PRK01175 phosphoribosylformylg 35.6 2.3E+02 0.005 26.3 8.4 57 13-75 3-59 (261)
425 PRK06321 replicative DNA helic 35.3 2.2E+02 0.0047 29.1 8.8 41 16-56 229-270 (472)
426 PRK11199 tyrA bifunctional cho 35.2 1.4E+02 0.003 29.4 7.3 33 13-50 98-131 (374)
427 TIGR01501 MthylAspMutase methy 35.2 70 0.0015 26.3 4.3 58 14-71 2-59 (134)
428 PF12695 Abhydrolase_5: Alpha/ 35.2 82 0.0018 25.3 5.0 32 17-48 2-33 (145)
429 cd03818 GT1_ExpC_like This fam 34.9 2.2E+02 0.0048 27.9 8.9 25 296-320 10-34 (396)
430 PRK05748 replicative DNA helic 34.8 1.8E+02 0.0039 29.4 8.2 41 16-56 206-247 (448)
431 PRK04940 hypothetical protein; 34.4 99 0.0022 26.8 5.3 30 114-143 61-91 (180)
432 KOG0832 Mitochondrial/chloropl 34.4 17 0.00036 32.5 0.6 121 17-145 83-207 (251)
433 PF03853 YjeF_N: YjeF-related 34.4 74 0.0016 27.2 4.7 38 11-49 23-60 (169)
434 PRK04296 thymidine kinase; Pro 34.4 2.1E+02 0.0045 24.9 7.6 35 15-49 3-38 (190)
435 PRK07889 enoyl-(acyl carrier p 34.4 1.4E+02 0.003 27.3 6.9 33 15-49 8-41 (256)
436 PRK06182 short chain dehydroge 34.2 1.3E+02 0.0029 27.6 6.8 32 16-50 5-36 (273)
437 TIGR02201 heptsyl_trn_III lipo 34.1 1.2E+02 0.0025 29.3 6.6 87 27-142 199-287 (344)
438 PRK11269 glyoxylate carboligas 33.6 1.3E+02 0.0027 31.8 7.2 24 359-382 72-101 (591)
439 cd02065 B12-binding_like B12 b 33.6 65 0.0014 25.5 4.0 36 16-51 2-37 (125)
440 PRK05234 mgsA methylglyoxal sy 33.5 2.8E+02 0.006 23.0 9.3 96 13-140 4-112 (142)
441 PRK05693 short chain dehydroge 33.5 1.4E+02 0.003 27.6 6.8 33 15-50 2-34 (274)
442 PRK13196 pyrrolidone-carboxyla 33.4 96 0.0021 27.7 5.3 27 13-39 1-29 (211)
443 COG0240 GpsA Glycerol-3-phosph 33.4 57 0.0012 31.2 4.0 34 13-51 1-34 (329)
444 TIGR01380 glut_syn glutathione 33.3 54 0.0012 31.4 4.0 41 14-54 1-44 (312)
445 PRK08229 2-dehydropantoate 2-r 33.3 37 0.0008 32.8 2.9 39 14-57 3-41 (341)
446 cd01983 Fer4_NifH The Fer4_Nif 33.2 97 0.0021 22.6 4.8 33 16-48 2-34 (99)
447 PF08323 Glyco_transf_5: Starc 33.1 41 0.00088 30.9 3.0 27 25-51 17-43 (245)
448 COG0771 MurD UDP-N-acetylmuram 33.0 74 0.0016 32.1 4.9 36 13-53 7-42 (448)
449 TIGR02128 G6PI_arch bifunction 33.0 4.4E+02 0.0095 25.1 11.5 115 17-142 69-185 (308)
450 TIGR00416 sms DNA repair prote 33.0 80 0.0017 32.0 5.3 41 16-56 97-137 (454)
451 PRK12315 1-deoxy-D-xylulose-5- 32.8 2.7E+02 0.0057 29.4 9.3 52 361-420 524-580 (581)
452 COG1887 TagB Putative glycosyl 32.8 3E+02 0.0065 27.3 9.1 104 341-453 274-381 (388)
453 PTZ00345 glycerol-3-phosphate 32.6 2.6E+02 0.0056 27.5 8.5 36 11-51 9-51 (365)
454 PRK13235 nifH nitrogenase redu 32.5 73 0.0016 29.7 4.7 36 15-50 3-38 (274)
455 cd01968 Nitrogenase_NifE_I Nit 32.4 2E+02 0.0043 28.7 8.0 24 114-140 357-380 (410)
456 COG2210 Peroxiredoxin family p 32.4 91 0.002 25.6 4.5 44 14-57 3-47 (137)
457 CHL00175 minD septum-site dete 32.4 87 0.0019 29.2 5.2 43 9-51 10-54 (281)
458 PRK14494 putative molybdopteri 32.3 80 0.0017 28.6 4.6 36 14-49 1-37 (229)
459 TIGR03880 KaiC_arch_3 KaiC dom 32.2 88 0.0019 28.0 5.1 43 15-57 18-60 (224)
460 PRK09165 replicative DNA helic 32.0 2E+02 0.0044 29.5 8.1 42 16-57 220-276 (497)
461 cd00861 ProRS_anticodon_short 32.0 1.1E+02 0.0024 22.7 4.9 56 15-71 3-61 (94)
462 TIGR03371 cellulose_yhjQ cellu 32.0 68 0.0015 29.1 4.3 37 16-52 4-41 (246)
463 cd03785 GT1_MurG MurG is an N- 31.7 3.5E+02 0.0076 25.7 9.6 35 284-319 2-36 (350)
464 PRK14619 NAD(P)H-dependent gly 31.7 63 0.0014 30.7 4.2 35 12-51 3-37 (308)
465 PLN02240 UDP-glucose 4-epimera 31.6 75 0.0016 30.6 4.8 33 13-49 5-37 (352)
466 PF09001 DUF1890: Domain of un 31.6 36 0.00078 27.8 2.0 33 25-57 11-43 (139)
467 COG0299 PurN Folate-dependent 31.5 1.6E+02 0.0035 25.9 6.1 134 281-437 51-186 (200)
468 cd03789 GT1_LPS_heptosyltransf 31.5 1.3E+02 0.0029 27.8 6.4 88 27-143 139-226 (279)
469 PRK14618 NAD(P)H-dependent gly 31.5 66 0.0014 30.9 4.3 33 13-50 4-36 (328)
470 PF02826 2-Hacid_dh_C: D-isome 31.5 78 0.0017 27.3 4.4 101 279-416 35-141 (178)
471 cd01147 HemV-2 Metal binding p 31.5 1.3E+02 0.0027 27.5 6.1 56 345-405 65-125 (262)
472 PF04748 Polysacc_deac_2: Dive 31.5 2E+02 0.0043 25.8 7.0 40 97-140 105-147 (213)
473 TIGR02193 heptsyl_trn_I lipopo 31.2 2.1E+02 0.0045 27.2 7.7 97 14-142 180-281 (319)
474 PF01075 Glyco_transf_9: Glyco 31.2 1.4E+02 0.003 27.0 6.3 100 13-144 105-212 (247)
475 PF03641 Lysine_decarbox: Poss 31.1 2.1E+02 0.0046 23.3 6.6 77 301-383 3-92 (133)
476 cd01977 Nitrogenase_VFe_alpha 31.1 1.3E+02 0.0027 30.2 6.3 33 12-49 287-320 (415)
477 PF13614 AAA_31: AAA domain; P 31.1 87 0.0019 25.9 4.6 41 16-56 3-44 (157)
478 PRK12829 short chain dehydroge 31.0 70 0.0015 29.2 4.3 39 8-50 6-44 (264)
479 PF08433 KTI12: Chromatin asso 30.9 2.6E+02 0.0057 26.0 8.0 96 16-142 4-105 (270)
480 PF01995 DUF128: Domain of unk 30.9 2.4E+02 0.0052 25.7 7.4 81 279-382 143-223 (236)
481 smart00046 DAGKc Diacylglycero 30.8 44 0.00095 26.9 2.5 30 354-385 50-88 (124)
482 PF01372 Melittin: Melittin; 30.8 7.7 0.00017 21.1 -1.2 17 364-380 1-17 (26)
483 PRK00881 purH bifunctional pho 30.7 1.5E+02 0.0033 30.3 6.7 53 14-76 5-59 (513)
484 PRK06731 flhF flagellar biosyn 30.5 3.9E+02 0.0084 25.0 9.0 41 13-53 75-115 (270)
485 PRK12859 3-ketoacyl-(acyl-carr 30.4 1.9E+02 0.004 26.4 7.0 18 31-48 22-39 (256)
486 PF02571 CbiJ: Precorrin-6x re 30.4 1.1E+02 0.0024 28.2 5.3 103 30-141 118-226 (249)
487 PRK12361 hypothetical protein; 30.3 2E+02 0.0044 29.9 8.0 29 353-383 297-329 (547)
488 TIGR01133 murG undecaprenyldip 30.3 3E+02 0.0064 26.2 8.8 34 284-318 3-36 (348)
489 TIGR03837 efp_adjacent_2 conse 30.2 65 0.0014 31.3 3.8 31 21-51 8-39 (371)
490 PRK14478 nitrogenase molybdenu 30.2 1.9E+02 0.0042 29.5 7.6 89 12-138 323-415 (475)
491 KOG1209 1-Acyl dihydroxyaceton 30.2 68 0.0015 28.7 3.6 30 13-47 7-38 (289)
492 PRK11780 isoprenoid biosynthes 30.2 1.1E+02 0.0024 27.4 5.2 38 14-51 2-43 (217)
493 PRK08220 2,3-dihydroxybenzoate 30.1 4E+02 0.0087 23.8 9.2 35 13-51 8-42 (252)
494 PRK14569 D-alanyl-alanine synt 30.1 1E+02 0.0022 29.1 5.3 37 12-48 2-42 (296)
495 PRK05636 replicative DNA helic 30.0 1.6E+02 0.0035 30.3 6.9 123 16-142 268-423 (505)
496 TIGR01005 eps_transp_fam exopo 30.0 2.8E+02 0.0062 30.2 9.3 40 13-52 545-586 (754)
497 PRK07236 hypothetical protein; 30.0 94 0.002 30.6 5.2 38 8-50 1-38 (386)
498 TIGR00355 purH phosphoribosyla 30.0 1.3E+02 0.0028 30.7 6.0 85 28-122 11-100 (511)
499 COG0547 TrpD Anthranilate phos 29.9 5.2E+02 0.011 25.0 12.7 26 294-319 197-223 (338)
500 COG3958 Transketolase, C-termi 29.6 2.9E+02 0.0063 26.1 7.7 109 280-420 192-312 (312)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.5e-63 Score=491.22 Aligned_cols=440 Identities=38% Similarity=0.756 Sum_probs=353.1
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-------C---CCCcceEecCCCCCCCCCC
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-------S---SSSIPLEAISDGYDEGGYA 80 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-------~---~~g~~~~~~~~~~~~~~~~ 80 (467)
+...||+++|+++.||++|++.||+.|+.+|..|||++++.+...+.+.. . ...+.|..+++++++ +.+
T Consensus 5 ~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~-~~~ 83 (480)
T PLN02555 5 SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE-DDP 83 (480)
T ss_pred CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC-Ccc
Confidence 44579999999999999999999999999999999999997666543100 0 112566667777765 322
Q ss_pred CccCHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCccc
Q 012277 81 QAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLE 160 (467)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 160 (467)
...+...++..+.......++++++.+..+..|++|||+|.+..|+..+|+++|||.+.|++++++.+.++.++.....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~ 163 (480)
T PLN02555 84 RRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVP 163 (480)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCC
Confidence 22344455666655667778888877653345569999999999999999999999999999999998888776443222
Q ss_pred CCC---CCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCe
Q 012277 161 LPL---TGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSL 237 (467)
Q Consensus 161 ~p~---~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 237 (467)
.+. .+.+..+|++|.+...+++.++.....+....+.+. +......+++++++|||++||.. .++.+....++
T Consensus 164 ~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~a~~vlvNTf~eLE~~---~~~~l~~~~~v 239 (480)
T PLN02555 164 FPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAIL-GQYKNLDKPFCILIDTFQELEKE---IIDYMSKLCPI 239 (480)
T ss_pred cccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHH-HHHHhcccCCEEEEEchHHHhHH---HHHHHhhCCCE
Confidence 221 123456899988888888877643223344455555 56666778889999999999999 88888665569
Q ss_pred eeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEE
Q 012277 238 RTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVV 317 (467)
Q Consensus 238 ~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 317 (467)
+.|||+.+... +.+...++..|.. ++++.+||+.++++++|||||||+...+.+++.+++.+|+..+.+|||++
T Consensus 240 ~~iGPl~~~~~-----~~~~~~~~~~~~~-~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 313 (480)
T PLN02555 240 KPVGPLFKMAK-----TPNSDVKGDISKP-ADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVM 313 (480)
T ss_pred EEeCcccCccc-----ccccccccccccc-chhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 99999976421 0111122223332 46799999998888999999999998899999999999999999999998
Q ss_pred eCCc------cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHH
Q 012277 318 RESE------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNA 391 (467)
Q Consensus 318 ~~~~------~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na 391 (467)
.... ...+|+++.++ .++|+.+.+|+||.+||.|+++++||||||+||++||+++|||||++|++.||+.||
T Consensus 314 ~~~~~~~~~~~~~lp~~~~~~--~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na 391 (480)
T PLN02555 314 RPPHKDSGVEPHVLPEEFLEK--AGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDA 391 (480)
T ss_pred ecCcccccchhhcCChhhhhh--cCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHH
Confidence 6321 13578888777 778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcccccc------C-CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012277 392 KYILDVWKTGLKF------P-IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 392 ~~v~~~~G~G~~l------~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 463 (467)
+++++.||+|+.+ . .++.++|.++|++++.+++++++|+||++|++++++++.+||++..++++||+++..+
T Consensus 392 ~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 392 VYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 9999877999998 2 5899999999999998887889999999999999999999999999999999999866
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-62 Score=484.34 Aligned_cols=437 Identities=48% Similarity=0.895 Sum_probs=344.7
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
+.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+.. ....++.+..+++++++...+...+...++..+
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~-~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~ 83 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHL-DPSSPISIATISDGYDQGGFSSAGSVPEYLQNF 83 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhccc-CCCCCEEEEEcCCCCCCcccccccCHHHHHHHH
Confidence 4699999999999999999999999999999999999987655431 112469999999888762222233455666666
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCCC
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPG 172 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P~ 172 (467)
...+...++++++.+.....|+|+||+|.+..|+..+|+++|||.+.|++++++....++...... ...+..+|+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~-----~~~~~~~pg 158 (449)
T PLN02173 84 KTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINN-----GSLTLPIKD 158 (449)
T ss_pred HHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhcc-----CCccCCCCC
Confidence 666777888888776533345699999999999999999999999999998877775554422111 112345788
Q ss_pred CCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcccccc
Q 012277 173 MPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLDKQ 252 (467)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~~~ 252 (467)
+|.+...+++.++..........+.+. +......+++.+++||+++||+. +++.++...+++.|||+.+.......
T Consensus 159 ~p~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~---~~~~~~~~~~v~~VGPl~~~~~~~~~ 234 (449)
T PLN02173 159 LPLLELQDLPTFVTPTGSHLAYFEMVL-QQFTNFDKADFVLVNSFHDLDLH---ENELLSKVCPVLTIGPTVPSMYLDQQ 234 (449)
T ss_pred CCCCChhhCChhhcCCCCchHHHHHHH-HHHhhhccCCEEEEeCHHHhhHH---HHHHHHhcCCeeEEcccCchhhcccc
Confidence 888888888876643222223344444 55566778899999999999999 88888665579999999753211111
Q ss_pred ccCcccccccccc-cchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccc
Q 012277 253 IEDDKDYGFSMFK-SSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSD 331 (467)
Q Consensus 253 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~ 331 (467)
...+...+..+|. ...+++.+|++.++++++|||||||....+.+++.+++.+| .+.+|+|++.......+|+++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~ 312 (449)
T PLN02173 235 IKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLE 312 (449)
T ss_pred ccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHH
Confidence 1011111223442 22356899999988889999999999988999999999999 57789999975433458888877
Q ss_pred cccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC--C---
Q 012277 332 ETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--I--- 406 (467)
Q Consensus 332 ~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~--~--- 406 (467)
++ .++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|..+. +
T Consensus 313 ~~-~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 313 TV-DKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred hh-cCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 62 26789999999999999999999999999999999999999999999999999999999998778898875 2
Q ss_pred -cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 407 -VKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 407 -~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
++.++|.++|+++|.+++++++|++|+++++++++++.+||++.+++++|++++..
T Consensus 392 ~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~~ 448 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQI 448 (449)
T ss_pred cccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhcc
Confidence 58999999999999988788999999999999999999999999999999999853
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.5e-61 Score=477.22 Aligned_cols=429 Identities=30% Similarity=0.512 Sum_probs=339.6
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHH
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
+.+.||+++|+++.||++|++.||+.|+.||+.|||++++.+..... ....++.+..+|+++++...+. .....++.
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~--~~~~~i~~~~ip~glp~~~~~~-~~~~~~~~ 81 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS--DDFTDFQFVTIPESLPESDFKN-LGPIEFLH 81 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc--cCCCCeEEEeCCCCCCcccccc-cCHHHHHH
Confidence 35679999999999999999999999999999999999997753211 1123689999998777522222 23345555
Q ss_pred HHHHhCchhHHHHHHHhcC-CCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhc---Cc--ccCCC-
Q 012277 91 RFWQIGPQTLTELVEKMNG-SDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK---GS--LELPL- 163 (467)
Q Consensus 91 ~~~~~~~~~l~~~i~~l~~-~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~---~~--~~~p~- 163 (467)
.+...+...++++++.+.. ...++++||+|.+..|+..+|+++|||++.|++++++.+.++..+.. .. .+...
T Consensus 82 ~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (451)
T PLN02410 82 KLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEP 161 (451)
T ss_pred HHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcccc
Confidence 5555666677788877642 23467999999999999999999999999999999888877665311 10 11111
Q ss_pred -CCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcC--Ceeee
Q 012277 164 -TGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTW--SLRTI 240 (467)
Q Consensus 164 -~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~~v 240 (467)
...+..+|+++.+...+++.+... ....+...+. ... ...+++++++|||++||+. +++.+.... +++.|
T Consensus 162 ~~~~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~-~~~-~~~~~~~vlvNTf~eLE~~---~~~~l~~~~~~~v~~v 234 (451)
T PLN02410 162 KGQQNELVPEFHPLRCKDFPVSHWA--SLESIMELYR-NTV-DKRTASSVIINTASCLESS---SLSRLQQQLQIPVYPI 234 (451)
T ss_pred ccCccccCCCCCCCChHHCcchhcC--CcHHHHHHHH-HHh-hcccCCEEEEeChHHhhHH---HHHHHHhccCCCEEEe
Confidence 112345888877776676654321 1222223222 222 3467889999999999999 888886643 69999
Q ss_pred cccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCC
Q 012277 241 GPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRES 320 (467)
Q Consensus 241 gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 320 (467)
||+...... +.+++. ...++.+|+|.++.++||||||||....+.+.+.+++.+|+..|.+|+|++...
T Consensus 235 Gpl~~~~~~----------~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~ 303 (451)
T PLN02410 235 GPLHLVASA----------PTSLLE-ENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPG 303 (451)
T ss_pred cccccccCC----------Cccccc-cchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 999754110 011121 124678999998889999999999999999999999999999999999999742
Q ss_pred c------cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHH
Q 012277 321 E------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYI 394 (467)
Q Consensus 321 ~------~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v 394 (467)
. ...+|++|.++ .++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++
T Consensus 304 ~~~~~~~~~~lp~~f~er--~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~ 381 (451)
T PLN02410 304 SVRGSEWIESLPKEFSKI--ISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYL 381 (451)
T ss_pred cccccchhhcCChhHHHh--ccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHH
Confidence 1 12479999988 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhccccccC-CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 395 LDVWKTGLKFP-IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 395 ~~~~G~G~~l~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
++.||+|+.+. .++.++|.++|+++|.++++++||++++++++++++++.+||++..++++|+++|+.
T Consensus 382 ~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 382 ECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 88779999997 899999999999999887677999999999999999999999999999999999875
No 4
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.5e-61 Score=476.11 Aligned_cols=436 Identities=32% Similarity=0.608 Sum_probs=333.0
Q ss_pred CCCCcEEEEEcCCCCcChHHHHHHHHH--HHhCCCEEEEEeCccccccccCC-CCCCCcceEecCCCCCCCCCCCccCHH
Q 012277 10 SCKLAHCLVLTYPGQGHINPLLQFSRR--LQHKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISDGYDEGGYAQAESIE 86 (467)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~la~~--L~~rGh~V~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (467)
..+..||+++|+++.||++|++.||+. |++||++|||++++.+...+... .....+.+..+++++++ ... .+..
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~-~~~--~~~~ 81 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPK-DDP--RAPE 81 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCC-Ccc--cCHH
Confidence 444679999999999999999999999 56999999999999987765421 11235777777777766 321 2444
Q ss_pred HHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCC--
Q 012277 87 AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLT-- 164 (467)
Q Consensus 87 ~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~-- 164 (467)
.++..+...+...++++++. .++|+||+|.++.|+..+|+++|||.+.|++.+++.+.++.+........+..
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~ 156 (456)
T PLN02210 82 TLLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLED 156 (456)
T ss_pred HHHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccc
Confidence 55555554444445555443 25799999999999999999999999999999988887776542211111111
Q ss_pred -CCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeeccc
Q 012277 165 -GNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPT 243 (467)
Q Consensus 165 -~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~ 243 (467)
..+..+|+++.+...+++.++..... ..+..... +........+.+++||+.+||.. .++.+.+..++++|||+
T Consensus 157 ~~~~~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~---~~~~l~~~~~v~~VGPl 231 (456)
T PLN02210 157 LNQTVELPALPLLEVRDLPSFMLPSGG-AHFNNLMA-EFADCLRYVKWVLVNSFYELESE---IIESMADLKPVIPIGPL 231 (456)
T ss_pred cCCeeeCCCCCCCChhhCChhhhcCCc-hHHHHHHH-HHHHhcccCCEEEEeCHHHHhHH---HHHHHhhcCCEEEEccc
Confidence 12356888877777777765543221 11222222 33334566789999999999999 88887665469999999
Q ss_pred CCCccccccccC-cccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCcc
Q 012277 244 IPSFYLDKQIED-DKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQ 322 (467)
Q Consensus 244 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 322 (467)
.+.......... ....+..+|.. ++++.+|++.++++++|||||||....+.+++++++.+|+..|.+|+|+++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~ 310 (456)
T PLN02210 232 VSPFLLGDDEEETLDGKNLDMCKS-DDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK 310 (456)
T ss_pred CchhhcCccccccccccccccccc-chHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence 753110000000 01111123443 5678999999888899999999999889999999999999999999999975322
Q ss_pred CcCCccccccccC-CCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHh-Hhcc
Q 012277 323 AKLPKKFSDETLT-SHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILD-VWKT 400 (467)
Q Consensus 323 ~~l~~~~~~~~~~-~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G~ 400 (467)
...++.+.++ . +++..+++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++ + |+
T Consensus 311 ~~~~~~~~~~--~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~-g~ 387 (456)
T PLN02210 311 AQNVQVLQEM--VKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVF-GI 387 (456)
T ss_pred ccchhhHHhh--ccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHh-Ce
Confidence 2233444444 3 4777888999999999999999999999999999999999999999999999999999998 7 99
Q ss_pred ccccC------CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 401 GLKFP------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 401 G~~l~------~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
|..+. .++.++|.++|+++|.+++++++|+||++|++.+++++++||++..++++|+++++.
T Consensus 388 G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~~ 455 (456)
T PLN02210 388 GVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDITI 455 (456)
T ss_pred EEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 99884 489999999999999988777899999999999999999999999999999999864
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.4e-61 Score=476.27 Aligned_cols=429 Identities=27% Similarity=0.488 Sum_probs=335.3
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCC-CCCCCcceEecCCCCCCCCCCCccCHHHHH
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (467)
..+.||+++|+++.||++|++.||+.|+.+|++||+++++.+...+... ....++.+..+|++.+. .. ..+...++
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~-~~--~~~~~~l~ 80 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD-DP--PRDFFSIE 80 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC-Cc--cccHHHHH
Confidence 4456999999999999999999999999999999999999887655421 11236999999977654 21 22344445
Q ss_pred HHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhh----cCcccC---C
Q 012277 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK----KGSLEL---P 162 (467)
Q Consensus 90 ~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~~~~---p 162 (467)
..+...+...+.++++.+... .|+++||+|.+..|+..+|+++|||++.|+++++..+.++.+.. ...... |
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCP 159 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccc
Confidence 555556777788888876532 35699999999999999999999999999998887777665432 111111 1
Q ss_pred CCCCee-eCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhh------cC
Q 012277 163 LTGNEI-LLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRK------TW 235 (467)
Q Consensus 163 ~~~~~~-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~------~~ 235 (467)
....+. .+|++|.+...+++.++..........+.+. +......+++++++|||.+||+. .++.+.. .+
T Consensus 160 ~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~---~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 160 RQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWT-RTLERTKSLRWILMNSFKDEEYD---DVKNHQASYNNGQNP 235 (448)
T ss_pred ccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHH-HHHhccccCCEEEEcChhhhCHH---HHHHHHhhhccccCC
Confidence 111122 5788877777788776533322233345555 55666777889999999999997 6775532 23
Q ss_pred CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccc-cCCHHHHHHHHHHHhhCCCcEE
Q 012277 236 SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFV-ELKAEEMEELAWGLKSSDQHFL 314 (467)
Q Consensus 236 ~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i 314 (467)
+++.|||+..... ....+...+.. +.++.+||+.++++++|||||||.. ..+.+++++++.+|+++|.+||
T Consensus 236 ~v~~iGpl~~~~~-------~~~~~~~~~~~-~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fi 307 (448)
T PLN02562 236 QILQIGPLHNQEA-------TTITKPSFWEE-DMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFI 307 (448)
T ss_pred CEEEecCcccccc-------cccCCCccccc-hHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 5999999976521 00001111222 3567799999888899999999986 6789999999999999999999
Q ss_pred EEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHH
Q 012277 315 WVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYI 394 (467)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v 394 (467)
|++.....+.++++|.++ .++|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++
T Consensus 308 W~~~~~~~~~l~~~~~~~--~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~ 385 (448)
T PLN02562 308 WVLNPVWREGLPPGYVER--VSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYI 385 (448)
T ss_pred EEEcCCchhhCCHHHHHH--hccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHH
Confidence 999654334588888877 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012277 395 LDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 461 (467)
Q Consensus 395 ~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 461 (467)
++.||+|+.+.+++.++|.++|+++|.|+ +||+||+++++++++. ..||++.+++++|+++|+
T Consensus 386 ~~~~g~g~~~~~~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 386 VDVWKIGVRISGFGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHhCceeEeCCCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 87459998888889999999999999987 9999999999999876 567899999999999874
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.3e-60 Score=464.52 Aligned_cols=429 Identities=36% Similarity=0.690 Sum_probs=334.2
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccc-cccc-cCCCCCCCcceEecCCCCCCCCC-CCccCHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFF-YKSL-HRDSSSSSIPLEAISDGYDEGGY-AQAESIEAYL 89 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 89 (467)
.||+++|+++.||++|++.||+.|+. +|+.|||++++.+ ...+ .+.....++.+..+++++++ +. ....+...++
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~-g~~~~~~~~~~~~ 82 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDD-GVISNTDDVQNRL 82 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCC-ccccccccHHHHH
Confidence 49999999999999999999999996 6999999999854 2221 11111236899999987776 32 2234555666
Q ss_pred HHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeee
Q 012277 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (467)
Q Consensus 90 ~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (467)
..+...+...+.++++.+.....|+++||+|.+..|+..+|+++|||.+.|++++++.++++++..... .....
T Consensus 83 ~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~~~ 156 (455)
T PLN02152 83 VNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSVFE 156 (455)
T ss_pred HHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCeee
Confidence 666777788888888876533356799999999999999999999999999999999888877654211 12346
Q ss_pred CCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhc--CCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCc
Q 012277 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENID--KADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSF 247 (467)
Q Consensus 170 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~ 247 (467)
+|++|.+...+++.+.........+.+.+. +...... ..+.+++|||++||+. .++.+... +++.|||+.+..
T Consensus 157 iPglp~l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vlvNTf~eLE~~---~~~~l~~~-~v~~VGPL~~~~ 231 (455)
T PLN02152 157 FPNLPSLEIRDLPSFLSPSNTNKAAQAVYQ-ELMEFLKEESNPKILVNTFDSLEPE---FLTAIPNI-EMVAVGPLLPAE 231 (455)
T ss_pred cCCCCCCchHHCchhhcCCCCchhHHHHHH-HHHHHhhhccCCEEEEeChHHhhHH---HHHhhhcC-CEEEEcccCccc
Confidence 899988888888877643222222333333 3333332 2468999999999999 88888653 799999997541
Q ss_pred cccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCcc-----
Q 012277 248 YLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQ----- 322 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~----- 322 (467)
... .........++. .+.++.+|||.+++++||||||||....+.+++++++.+|+.++.+|+|++.....
T Consensus 232 ~~~---~~~~~~~~~~~~-~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~ 307 (455)
T PLN02152 232 IFT---GSESGKDLSVRD-QSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKI 307 (455)
T ss_pred ccc---ccccCccccccc-cchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccc
Confidence 100 000000001111 23579999999888899999999999999999999999999999999999975210
Q ss_pred -------CcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHH
Q 012277 323 -------AKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYIL 395 (467)
Q Consensus 323 -------~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~ 395 (467)
..++++|.++ .++|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||++++
T Consensus 308 ~~~~~~~~~~~~~f~e~--~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~ 385 (455)
T PLN02152 308 EGEEETEIEKIAGFRHE--LEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLE 385 (455)
T ss_pred ccccccccccchhHHHh--ccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHH
Confidence 1236777777 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhccccccC-----CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012277 396 DVWKTGLKFP-----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 461 (467)
Q Consensus 396 ~~~G~G~~l~-----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 461 (467)
+.||+|..+. .++.++|.++|+++|.++ +.+||++|+++++++++++.+||++..++++|++++.
T Consensus 386 ~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 386 EIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred HHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 8546666553 359999999999999764 4479999999999999999999999999999999873
No 7
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.6e-59 Score=467.84 Aligned_cols=430 Identities=32% Similarity=0.623 Sum_probs=333.3
Q ss_pred CCCCcEEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHH
Q 012277 10 SCKLAHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEA 87 (467)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (467)
.....||+++++++.||++|++.||+.|+.| ||+|||++++.+...+++.....|+.|+.++++.+. ......+...
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~-~~~~~~~~~~ 85 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPS-ELVRAADFPG 85 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCC-ccccccCHHH
Confidence 3456799999999999999999999999999 999999999998877763212247999999976555 3333334555
Q ss_pred HHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhc----CcccCCC
Q 012277 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK----GSLELPL 163 (467)
Q Consensus 88 ~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~----~~~~~p~ 163 (467)
++..+...+...++++++.+. .++|+||+|.++.|+..+|+++|||++.++++++..++.+.+... ...+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (459)
T PLN02448 86 FLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVEL 162 (459)
T ss_pred HHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCcc
Confidence 555555556666777776654 457999999999999999999999999999999877776555421 1111111
Q ss_pred ----CCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcC--Ce
Q 012277 164 ----TGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTW--SL 237 (467)
Q Consensus 164 ----~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~ 237 (467)
+.....+|+++.+...+++.+.... .....+.+. +......+++.+++||+++||+. .++.+.+.. ++
T Consensus 163 ~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~---~~~~l~~~~~~~~ 236 (459)
T PLN02448 163 SESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRIL-EAFSWVPKAQYLLFTSFYELEAQ---AIDALKSKFPFPV 236 (459)
T ss_pred ccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHH-HHHhhcccCCEEEEccHHHhhHH---HHHHHHhhcCCce
Confidence 1001147777666666777654322 223344445 55555667789999999999998 888886653 69
Q ss_pred eeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEE
Q 012277 238 RTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVV 317 (467)
Q Consensus 238 ~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 317 (467)
+.|||+.+..... .. ..+.+ ....+.++.+|++.++++++|||||||....+.+++++++.+|+..+.+|||++
T Consensus 237 ~~iGP~~~~~~~~----~~-~~~~~-~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~ 310 (459)
T PLN02448 237 YPIGPSIPYMELK----DN-SSSSN-NEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVA 310 (459)
T ss_pred EEecCcccccccC----CC-ccccc-cccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999997642110 00 00000 011134789999998888999999999988889999999999999999999987
Q ss_pred eCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhH
Q 012277 318 RESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDV 397 (467)
Q Consensus 318 ~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 397 (467)
... ..++.++ .++|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.
T Consensus 311 ~~~-----~~~~~~~--~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 383 (459)
T PLN02448 311 RGE-----ASRLKEI--CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVED 383 (459)
T ss_pred cCc-----hhhHhHh--ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHH
Confidence 532 1233333 446899999999999999999999999999999999999999999999999999999999984
Q ss_pred hccccccC-------CcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 398 WKTGLKFP-------IVKRDAIADCISEILEG--ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 398 ~G~G~~l~-------~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
||+|..+. .+++++|+++|+++|.+ +++++||++|++|++++++++.+||++..++++|+++|+.
T Consensus 384 ~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 384 WKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred hCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 48888874 36999999999999976 4677999999999999999999999999999999999975
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.8e-59 Score=463.46 Aligned_cols=438 Identities=27% Similarity=0.391 Sum_probs=328.1
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-CCCCcceEecCC----CCCCCCCCCccC-
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISD----GYDEGGYAQAES- 84 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~g~~~~~~~~----~~~~~~~~~~~~- 84 (467)
.++.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+.... ...++.+..++- ++++ +.+...+
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPd-G~~~~~~~ 85 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPS-GVENVKDL 85 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCC-CCcChhhc
Confidence 45689999999999999999999999999999999999998876665321 123466665441 3333 2222222
Q ss_pred ---HHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccC
Q 012277 85 ---IEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLEL 161 (467)
Q Consensus 85 ---~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 161 (467)
...++..........+.++++.. ..++++||+|.+..|+..+|+++|||++.|++++++.+.++.++.......
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~ 162 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTK 162 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccc
Confidence 11222222233344444555443 245699999999999999999999999999999999998888764321110
Q ss_pred --CCC-CCe---eeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc-
Q 012277 162 --PLT-GNE---ILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT- 234 (467)
Q Consensus 162 --p~~-~~~---~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~- 234 (467)
+.+ ..+ ..+|+++.+...+++.++..........+.+. +.......++.+++||+++||+. .++.+...
T Consensus 163 ~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~---~~~~~~~~~ 238 (477)
T PLN02863 163 INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIK-DSFRANIASWGLVVNSFTELEGI---YLEHLKKEL 238 (477)
T ss_pred ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHH-HHHhhhccCCEEEEecHHHHHHH---HHHHHHhhc
Confidence 111 111 24788887888888876543222223344444 44444456778999999999999 88888664
Q ss_pred --CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCc
Q 012277 235 --WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQH 312 (467)
Q Consensus 235 --~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 312 (467)
.+++.|||+.+..... . .....+...+. .++++.+|++.++++++|||||||....+.+++.+++.+|+..|.+
T Consensus 239 ~~~~v~~IGPL~~~~~~~-~--~~~~~~~~~~~-~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~ 314 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEK-S--GLMERGGPSSV-SVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVH 314 (477)
T ss_pred CCCCeEEeCCCccccccc-c--cccccCCcccc-cHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCc
Confidence 3699999997541100 0 00011211111 2467999999988899999999999988999999999999999999
Q ss_pred EEEEEeCCc-----cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccch
Q 012277 313 FLWVVRESE-----QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQ 387 (467)
Q Consensus 313 ~i~~~~~~~-----~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ 387 (467)
|||+++... ...+|++|.+++ ...++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||
T Consensus 315 flw~~~~~~~~~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 393 (477)
T PLN02863 315 FIWCVKEPVNEESDYSNIPSGFEDRV-AGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQ 393 (477)
T ss_pred EEEEECCCcccccchhhCCHHHHHHh-ccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccc
Confidence 999997432 124777877663 24577788999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhHhccccccC-----CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 388 STNAKYILDVWKTGLKFP-----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 388 ~~na~~v~~~~G~G~~l~-----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
+.||+++.+.||+|..+. ..+.+++.++|.+++.+. ++||+||+++++++++++.+||++..++++|+++++.
T Consensus 394 ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~--~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 394 FVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSEN--QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred hhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 999999765449999883 358999999999999422 4999999999999999999999999999999999986
Q ss_pred c
Q 012277 463 S 463 (467)
Q Consensus 463 ~ 463 (467)
.
T Consensus 472 ~ 472 (477)
T PLN02863 472 L 472 (477)
T ss_pred h
Confidence 4
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.1e-58 Score=458.50 Aligned_cols=418 Identities=26% Similarity=0.454 Sum_probs=324.3
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccccccccCC-CCCCCcceEecCC----CCCCCCCCCccCHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISD----GYDEGGYAQAESIEA 87 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~~~~-~~~~g~~~~~~~~----~~~~~~~~~~~~~~~ 87 (467)
.||+++|+++.||++|++.||+.|+ .+|++|||++++.+...+.+. ....++.+..+|. ++++.. .+...
T Consensus 6 pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~----~~~~~ 81 (481)
T PLN02992 6 PHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS----AHVVT 81 (481)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC----ccHHH
Confidence 5999999999999999999999998 789999999999876544211 1123688888884 232101 12222
Q ss_pred HHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhc--CcccCC--C
Q 012277 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK--GSLELP--L 163 (467)
Q Consensus 88 ~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--~~~~~p--~ 163 (467)
.+..+.......++++++++. .++++||+|.++.|+..+|+++|||++.|++++++.++++.+... .....+ .
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~ 158 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTV 158 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccccc
Confidence 233333344556666666542 356999999999999999999999999999999888776554421 111100 0
Q ss_pred CCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc--------C
Q 012277 164 TGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT--------W 235 (467)
Q Consensus 164 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--------~ 235 (467)
...+..+|+++.+...+++..+.... ......+. +.......++++++||+.+||+. .++.+... .
T Consensus 159 ~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~---~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 159 QRKPLAMPGCEPVRFEDTLDAYLVPD--EPVYRDFV-RHGLAYPKADGILVNTWEEMEPK---SLKSLQDPKLLGRVARV 232 (481)
T ss_pred CCCCcccCCCCccCHHHhhHhhcCCC--cHHHHHHH-HHHHhcccCCEEEEechHHHhHH---HHHHHhhccccccccCC
Confidence 11235688887777777775332211 12334444 55556678899999999999999 88887532 3
Q ss_pred CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEE
Q 012277 236 SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLW 315 (467)
Q Consensus 236 ~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 315 (467)
+++.|||+.+... . ...++++.+||+.++.++||||||||....+.+++++++.+|+.++.+|||
T Consensus 233 ~v~~VGPl~~~~~------~---------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 233 PVYPIGPLCRPIQ------S---------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ceEEecCccCCcC------C---------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 6999999975411 0 012456899999988899999999999999999999999999999999999
Q ss_pred EEeCCc--------------------cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhC
Q 012277 316 VVRESE--------------------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLG 375 (467)
Q Consensus 316 ~~~~~~--------------------~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~G 375 (467)
++.... ...+|++|.+++ ...++.+.+|+||.+||+|+++++||||||+||++||+++|
T Consensus 298 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~-~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~G 376 (481)
T PLN02992 298 VVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRT-HDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGG 376 (481)
T ss_pred EEeCCcccccccccccCcccccccchhhhCCHHHHHHh-cCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcC
Confidence 995310 124777887773 23466777999999999999999999999999999999999
Q ss_pred CCeeecCCccchhhHHHHHH-hHhccccccC----CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH--cCCC
Q 012277 376 VPMVAMPQWSDQSTNAKYIL-DVWKTGLKFP----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVA--KGGS 448 (467)
Q Consensus 376 vP~v~~P~~~DQ~~na~~v~-~~~G~G~~l~----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~--~gg~ 448 (467)
||||++|++.||+.||++++ ++ |+|+.++ .++.++|.++|++++.++++++++++++++++++++++. +||+
T Consensus 377 VP~l~~P~~~DQ~~na~~~~~~~-g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGS 455 (481)
T PLN02992 377 VPMIAWPLFAEQNMNAALLSDEL-GIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGV 455 (481)
T ss_pred CCEEecCccchhHHHHHHHHHHh-CeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999995 77 9999996 389999999999999887778999999999999999994 5999
Q ss_pred cHHHHHHHHHHHH
Q 012277 449 SDSNIDEFVASLA 461 (467)
Q Consensus 449 ~~~~~~~~~~~l~ 461 (467)
+.+++++|++++.
T Consensus 456 S~~~l~~~v~~~~ 468 (481)
T PLN02992 456 AHESLCRVTKECQ 468 (481)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999886
No 10
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-58 Score=456.85 Aligned_cols=433 Identities=26% Similarity=0.430 Sum_probs=329.3
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEEEeCccccc-cc----cCC-CCCCCcceEecCCCCCCCCCCCcc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYK-SL----HRD-SSSSSIPLEAISDGYDEGGYAQAE 83 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~-~~----~~~-~~~~g~~~~~~~~~~~~~~~~~~~ 83 (467)
++.||+++|+++.||++|++.||+.|+.+| ..|||++++.+.. .+ .+. ....++.|..+|+...........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 346999999999999999999999999998 9999999987652 11 100 112368999998533210101122
Q ss_pred CHHHHHHHHHHhCch----hHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcc
Q 012277 84 SIEAYLERFWQIGPQ----TLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSL 159 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~----~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 159 (467)
+...++..+...... .+.++++.......|++|||+|.+..|+..+|+++|||.+.|+++++..++++.+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 344344333334433 3444444332222456999999999999999999999999999999988887766532111
Q ss_pred c---C--CCCCCeeeCCCC-CCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhh
Q 012277 160 E---L--PLTGNEILLPGM-PPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRK 233 (467)
Q Consensus 160 ~---~--p~~~~~~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 233 (467)
+ . +..+.+..+|++ +.+...+++.++..... ...+. +......+.+.+++||+++||.+ .++.+..
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~-~~~~~~~~~~~vlvNtf~~LE~~---~~~~~~~ 233 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDG----YDAYV-KLAILFTKANGILVNSSFDIEPY---SVNHFLD 233 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCcc----HHHHH-HHHHhcccCCEEEEEchHHHhHH---HHHHHHh
Confidence 1 1 111234578998 57888888876632221 23333 44445678899999999999998 7887743
Q ss_pred --c-CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCC
Q 012277 234 --T-WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSD 310 (467)
Q Consensus 234 --~-~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 310 (467)
. ++++.|||+..... ...+. ...+ .++++.+||+.++++++|||||||....+.+++++++.+|+.++
T Consensus 234 ~~~~p~v~~VGPl~~~~~--~~~~~-----~~~~--~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~ 304 (468)
T PLN02207 234 EQNYPSVYAVGPIFDLKA--QPHPE-----QDLA--RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQ 304 (468)
T ss_pred ccCCCcEEEecCCccccc--CCCCc-----cccc--hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCC
Confidence 3 35999999976421 00010 0111 23679999999888899999999999999999999999999999
Q ss_pred CcEEEEEeCCc---cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccch
Q 012277 311 QHFLWVVRESE---QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQ 387 (467)
Q Consensus 311 ~~~i~~~~~~~---~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ 387 (467)
++|||++.... .+.+|++|.++ .++|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||
T Consensus 305 ~~flW~~r~~~~~~~~~lp~~f~er--~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ 382 (468)
T PLN02207 305 YRFLWSLRTEEVTNDDLLPEGFLDR--VSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQ 382 (468)
T ss_pred CcEEEEEeCCCccccccCCHHHHhh--cCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccc
Confidence 99999997422 23578888888 78999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhHhccccccC---------CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 012277 388 STNAKYILDVWKTGLKFP---------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVA 458 (467)
Q Consensus 388 ~~na~~v~~~~G~G~~l~---------~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 458 (467)
+.||+++++.||+|+.+. .++.++|.++|+++|.+ ++++||+||+++++.+++++.+||++..++++|++
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIH 461 (468)
T ss_pred hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999998877339998552 35899999999999973 24599999999999999999999999999999999
Q ss_pred HHHhcc
Q 012277 459 SLACSK 464 (467)
Q Consensus 459 ~l~~~~ 464 (467)
++..-|
T Consensus 462 ~~~~~~ 467 (468)
T PLN02207 462 DVIGIK 467 (468)
T ss_pred HHHhcc
Confidence 998643
No 11
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.9e-58 Score=457.40 Aligned_cols=436 Identities=27% Similarity=0.495 Sum_probs=324.7
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-----CCCCcceEecC-----CCCCCCCCC
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-----SSSSIPLEAIS-----DGYDEGGYA 80 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-----~~~g~~~~~~~-----~~~~~~~~~ 80 (467)
.++.||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+.... ....+.++.+| +++++ +.+
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~ 84 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCE 84 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Ccc
Confidence 34579999999999999999999999999999999999998765544211 01238888887 46655 322
Q ss_pred CccC--HHHHHHHHHH---hCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhh
Q 012277 81 QAES--IEAYLERFWQ---IGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK 155 (467)
Q Consensus 81 ~~~~--~~~~~~~~~~---~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 155 (467)
.... ...++..+.. .....+.++++.. ..++|+||+|.++.|+..+|+++|||.+.|++++++....++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 2221 1123333322 2334455554432 246799999999999999999999999999999988877654321
Q ss_pred --cCcccCCCCCCeeeCCCCCC---CCCCCCCCccccCCCchhHHHHHHHHHhhh-hcCCcEEEEcchhhhhhhHHHHHH
Q 012277 156 --KGSLELPLTGNEILLPGMPP---LEPQDMPSFIHDLGSYPAVSYMMMKFQFEN-IDKADWVLCNTFYELEEEVAVVVE 229 (467)
Q Consensus 156 --~~~~~~p~~~~~~~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~ 229 (467)
......+.+..++.+|++|. +...+++.++.....+ +.+. ..... ....+.+++|||.+||+. .++
T Consensus 162 ~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~----~~~~-~~~~~~~~~a~~vlvNTf~eLE~~---~l~ 233 (491)
T PLN02534 162 LHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDL----DDVR-NKMREAESTAFGVVVNSFNELEHG---CAE 233 (491)
T ss_pred HhcccccCCCCCceeecCCCCccccccHHHCChhhcCcccH----HHHH-HHHHhhcccCCEEEEecHHHhhHH---HHH
Confidence 11112233334567888864 4555666544222111 2222 22222 234668999999999999 888
Q ss_pred HHhhcC--CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHh
Q 012277 230 WLRKTW--SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLK 307 (467)
Q Consensus 230 ~~~~~~--~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~ 307 (467)
.+.... +++.|||+.+.... . .+....+.....+..++.+|||.+++++||||||||......+++.+++.+|+
T Consensus 234 ~l~~~~~~~v~~VGPL~~~~~~--~--~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~ 309 (491)
T PLN02534 234 AYEKAIKKKVWCVGPVSLCNKR--N--LDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLE 309 (491)
T ss_pred HHHhhcCCcEEEECcccccccc--c--ccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 886643 59999999753110 0 00000011111123568899999888999999999999889999999999999
Q ss_pred hCCCcEEEEEeCCc------cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeec
Q 012277 308 SSDQHFLWVVRESE------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM 381 (467)
Q Consensus 308 ~~~~~~i~~~~~~~------~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~ 381 (467)
.++.+|+|++.... ...+|++|.+++ .+.++++.+|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 310 ~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~-~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~ 388 (491)
T PLN02534 310 ASKKPFIWVIKTGEKHSELEEWLVKENFEERI-KGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITW 388 (491)
T ss_pred hCCCCEEEEEecCccccchhhhcCchhhHHhh-ccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEec
Confidence 99999999997421 113577887653 24677788999999999999999999999999999999999999999
Q ss_pred CCccchhhHHHHHHhHhccccccC---------------CcCHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHHH
Q 012277 382 PQWSDQSTNAKYILDVWKTGLKFP---------------IVKRDAIADCISEILE--GERGKELRRNAGKWRKLAKEAVA 444 (467)
Q Consensus 382 P~~~DQ~~na~~v~~~~G~G~~l~---------------~~~~~~l~~~i~~vl~--~~~~~~~~~~a~~l~~~~~~~~~ 444 (467)
|.+.||+.||+++++.||+|+.+. .++.++|.++|+++|. +++++++|+||++|++++++++.
T Consensus 389 P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~ 468 (491)
T PLN02534 389 PLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAME 468 (491)
T ss_pred cccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999987779998762 1689999999999997 45677999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 012277 445 KGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 445 ~gg~~~~~~~~~~~~l~~~ 463 (467)
+||++..++++||++|+..
T Consensus 469 ~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 469 LGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999753
No 12
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9.2e-58 Score=458.90 Aligned_cols=436 Identities=28% Similarity=0.512 Sum_probs=316.0
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCC-----CC----CcceEecC---CCCCCCCC
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSS-----SS----SIPLEAIS---DGYDEGGY 79 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~-----~~----g~~~~~~~---~~~~~~~~ 79 (467)
++.||+++++++.||++|++.||+.|+.|||+|||++++.+...+++... .. .+...++| +++++ +.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-GC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-Cc
Confidence 35699999999999999999999999999999999999988765542100 01 23344555 34444 22
Q ss_pred CCcc--------CHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHH
Q 012277 80 AQAE--------SIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIY 151 (467)
Q Consensus 80 ~~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 151 (467)
+... ....++..+. .....+.+.++++.+. .++|+||+|.++.|+..+|+++|||++.|++++++.....
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~-~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET-TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred ccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc-CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 2111 1223333333 2223444555554433 3569999999999999999999999999999887776655
Q ss_pred hhhhcCc--ccCCCCCCeeeCCCCCC---CCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHH
Q 012277 152 YHVKKGS--LELPLTGNEILLPGMPP---LEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAV 226 (467)
Q Consensus 152 ~~~~~~~--~~~p~~~~~~~~P~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 226 (467)
....... ...+....+..+|++|. ....+++.. .....+..... .........+.+++||+++|+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~vl~Nt~~~le~~--- 232 (482)
T PLN03007 161 YCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMK-EVRESEVKSFGVLVNSFYELESA--- 232 (482)
T ss_pred HHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHH-HHHhhcccCCEEEEECHHHHHHH---
Confidence 4332110 11111112334677752 112222211 11122333333 44445667889999999999998
Q ss_pred HHHHHhhcC--CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHH
Q 012277 227 VVEWLRKTW--SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAW 304 (467)
Q Consensus 227 ~~~~~~~~~--~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 304 (467)
..+.+.... ++++|||+.+.... .......+...+ ..+.++.+|++.++++++|||||||....+.+.+.+++.
T Consensus 233 ~~~~~~~~~~~~~~~VGPl~~~~~~---~~~~~~~~~~~~-~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 233 YADFYKSFVAKRAWHIGPLSLYNRG---FEEKAERGKKAN-IDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHHHhccCCCEEEEccccccccc---cccccccCCccc-cchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 788876532 59999998643110 000000011111 124678999999888999999999998888999999999
Q ss_pred HHhhCCCcEEEEEeCCc-----cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCee
Q 012277 305 GLKSSDQHFLWVVRESE-----QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMV 379 (467)
Q Consensus 305 al~~~~~~~i~~~~~~~-----~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v 379 (467)
+|+.+|.+|+|+++... ...+|++|.+++ .+.|+++.+|+||.+||+|+++++||||||+||++||+++|||||
T Consensus 309 ~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-KGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred HHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-ccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 99999999999997531 124788887764 367888899999999999999999999999999999999999999
Q ss_pred ecCCccchhhHHHHHHhHhcccccc--------C--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCc
Q 012277 380 AMPQWSDQSTNAKYILDVWKTGLKF--------P--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSS 449 (467)
Q Consensus 380 ~~P~~~DQ~~na~~v~~~~G~G~~l--------~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 449 (467)
++|++.||+.||+++++.|++|..+ + .++.++|.++|+++|.++++++||++|+++++.+++++.+||++
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS 467 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSS 467 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999887433444332 3 57999999999999998878899999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 012277 450 DSNIDEFVASLACS 463 (467)
Q Consensus 450 ~~~~~~~~~~l~~~ 463 (467)
..++++|++++++-
T Consensus 468 ~~~l~~~v~~~~~~ 481 (482)
T PLN03007 468 FNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999854
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.1e-57 Score=453.83 Aligned_cols=426 Identities=24% Similarity=0.440 Sum_probs=327.1
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCC----CEEEEEeCccccc----cccCC-----CCCCCcceEecCCCCCCCC
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKG----IKVTLVTTRFFYK----SLHRD-----SSSSSIPLEAISDGYDEGG 78 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rG----h~V~~~~~~~~~~----~~~~~-----~~~~g~~~~~~~~~~~~~~ 78 (467)
.+.||+++|+++.||++|++.||+.|+.|| +.|||++++.+.. .+... ....++.+..+|++..+.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 345999999999999999999999999997 7999999876532 12110 0112588999986543212
Q ss_pred CCCccCHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcC-
Q 012277 79 YAQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKG- 157 (467)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~- 157 (467)
. .+...++..+...+...++++++.+. .++++||+|.++.|+..+|+++|||++.|+++++..++++.+....
T Consensus 82 ~---e~~~~~~~~~~~~~~~~l~~~L~~l~---~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 A---AGVEEFISRYIQLHAPHVRAAIAGLS---CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred c---ccHHHHHHHHHHhhhHHHHHHHHhcC---CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1 13334555455556666667666552 3579999999999999999999999999999999988887765321
Q ss_pred -ccc--CCCCCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc
Q 012277 158 -SLE--LPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT 234 (467)
Q Consensus 158 -~~~--~p~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 234 (467)
... .+....+..+|+++.+...+++.+...... .....+. .......+++++++||+++||+. .++.+...
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~--~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~---~~~~~~~~ 229 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKS--PNYAWFV-YHGRRFMEAAGIIVNTAAELEPG---VLAAIADG 229 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCCc--HHHHHHH-HHHHhhhhcCEEEEechHHhhHH---HHHHHHhc
Confidence 111 111112345899887888888866533221 1223333 34445577889999999999999 88887653
Q ss_pred --------CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHH
Q 012277 235 --------WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGL 306 (467)
Q Consensus 235 --------~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al 306 (467)
.+++.|||+.+... . +. . ...++++.+||+.++++++|||||||....+.+++.+++.+|
T Consensus 230 ~~~~~~~~~~v~~vGPl~~~~~---~-~~-------~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 230 RCTPGRPAPTVYPIGPVISLAF---T-PP-------A-EQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred cccccCCCCceEEeCCCccccc---c-CC-------C-ccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 25999999974311 0 00 0 112567999999988899999999999888899999999999
Q ss_pred hhCCCcEEEEEeCCc------------cCcCCccccccccCCCc-EEEEeccchHhhhcccccceeeecCChhhHHHHHH
Q 012277 307 KSSDQHFLWVVRESE------------QAKLPKKFSDETLTSHK-SLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALS 373 (467)
Q Consensus 307 ~~~~~~~i~~~~~~~------------~~~l~~~~~~~~~~~~~-v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~ 373 (467)
+..|.+|+|++.... ...+|++|.++ ..++ +.+.+|+||.+||+|+++++||||||+||++||++
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~ 375 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER--TKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLW 375 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhhCChHHHHH--hcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHH
Confidence 999999999997431 11266777666 3344 45559999999999999999999999999999999
Q ss_pred hCCCeeecCCccchhhHHHHHHhHhccccccC-------CcCHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHHH
Q 012277 374 LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP-------IVKRDAIADCISEILEGE--RGKELRRNAGKWRKLAKEAVA 444 (467)
Q Consensus 374 ~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-------~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~ 444 (467)
+|||||++|+++||+.||+++.+.||+|+.+. .++.++|.++|+++|.++ .++.+|++|++++++++++++
T Consensus 376 ~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~ 455 (480)
T PLN00164 376 HGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVE 455 (480)
T ss_pred cCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998755339999884 268999999999999874 367899999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 012277 445 KGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 445 ~gg~~~~~~~~~~~~l~~~ 463 (467)
+||++.+++++|++++...
T Consensus 456 ~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 456 EGGSSYAALQRLAREIRHG 474 (480)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999865
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.6e-57 Score=446.11 Aligned_cols=423 Identities=26% Similarity=0.427 Sum_probs=324.3
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCccccccc------cCCCCCCCcceEecCCCCCCCCCCCc-c
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSL------HRDSSSSSIPLEAISDGYDEGGYAQA-E 83 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~-~ 83 (467)
.+.||+++|+++.||++|++.||+.|+.+ |..|||+++..+.... .......++.+..+|....+ ++... .
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~ 80 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDA 80 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCc
Confidence 34599999999999999999999999977 9999999887655432 10000125888888854332 22111 1
Q ss_pred CHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCC-ceeeeccchHHHHHHhhhh--cCccc
Q 012277 84 SIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLL-GAPFLTQSCAVDYIYYHVK--KGSLE 160 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~--~~~~~ 160 (467)
+....+......+...++++++.+. .++++||+|.++.|+..+|+++||| .+.+.++.++...++.++. .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 3332333344456677788877764 3569999999999999999999999 5777777776665555432 11111
Q ss_pred C--CCCCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc----
Q 012277 161 L--PLTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT---- 234 (467)
Q Consensus 161 ~--p~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---- 234 (467)
. .....+..+|++|.+...+++.++.... ......+. +......+++++++|||++||+. .++.+.+.
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~---~~~~l~~~~~~~ 231 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDRS--DQQYKECV-RSGLEVPMSDGVLVNTWEELQGN---TLAALREDMELN 231 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCCC--cHHHHHHH-HHHHhcccCCEEEEechHHHhHH---HHHHHHhhcccc
Confidence 1 0112346789998888888886553221 12233444 44445678999999999999999 88888653
Q ss_pred ----CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCC
Q 012277 235 ----WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSD 310 (467)
Q Consensus 235 ----~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 310 (467)
.+++.|||+.+.. . +...++++.+|||.+++++||||||||....+.+++.+++.+|+.++
T Consensus 232 ~~~~~~v~~VGPl~~~~-----~----------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~ 296 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTN-----V----------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSG 296 (470)
T ss_pred cccCCceEEecCCCCCc-----c----------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCC
Confidence 4699999997430 0 01123579999999888999999999999999999999999999999
Q ss_pred CcEEEEEeCC-------------ccCcCCccccccccCCCcE-EEEeccchHhhhcccccceeeecCChhhHHHHHHhCC
Q 012277 311 QHFLWVVRES-------------EQAKLPKKFSDETLTSHKS-LVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGV 376 (467)
Q Consensus 311 ~~~i~~~~~~-------------~~~~l~~~~~~~~~~~~~v-~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~Gv 376 (467)
.+|+|++... ..+.+|++|.++ ..++. .+.+|+||.+||+|+++++||||||+||++||+++||
T Consensus 297 ~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er--~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 297 QRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDR--TRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred CcEEEEEecCccccccccccccchhhcCChHHHHh--hccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 9999999632 112477777776 44544 4569999999999999999999999999999999999
Q ss_pred CeeecCCccchhhHHHHHHhHhccccccC------CcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHcCCC
Q 012277 377 PMVAMPQWSDQSTNAKYILDVWKTGLKFP------IVKRDAIADCISEILEG--ERGKELRRNAGKWRKLAKEAVAKGGS 448 (467)
Q Consensus 377 P~v~~P~~~DQ~~na~~v~~~~G~G~~l~------~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~gg~ 448 (467)
|||++|++.||+.||+++++.||+|..+. .++.++|.++|+++|++ ++++++|+||++|++++++++.+||+
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGS 454 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGS 454 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999955559999883 58999999999999963 56789999999999999999999999
Q ss_pred cHHHHHHHHHHHH
Q 012277 449 SDSNIDEFVASLA 461 (467)
Q Consensus 449 ~~~~~~~~~~~l~ 461 (467)
+.+++++|++++.
T Consensus 455 S~~nl~~~~~~~~ 467 (470)
T PLN03015 455 SYNSLFEWAKRCY 467 (470)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999863
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1e-57 Score=451.43 Aligned_cols=427 Identities=26% Similarity=0.442 Sum_probs=318.6
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC--CCCCcceEecC----CCCCCCCCCCccCHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS--SSSSIPLEAIS----DGYDEGGYAQAESIE 86 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~--~~~g~~~~~~~----~~~~~~~~~~~~~~~ 86 (467)
..||+++|+++.||++|++.||+.|+.||+.|||++++.+...+.+.. ...++.+..++ +++++ +.+...+..
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~~~~~ 84 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESSTDVP 84 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Ccccccccc
Confidence 459999999999999999999999999999999999998876554211 12358888887 45654 222222221
Q ss_pred ----HHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhh----cCc
Q 012277 87 ----AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVK----KGS 158 (467)
Q Consensus 87 ----~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~ 158 (467)
.++......+...++++++.+ ++++||+|.+..|+..+|+++|||++.|++++++.++++.++. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~ 159 (472)
T PLN02670 85 YTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGD 159 (472)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhccc
Confidence 233333334444455554432 4699999999999999999999999999999988887765431 111
Q ss_pred ccCCCCCCee-eCCCC-C---C--CCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHH
Q 012277 159 LELPLTGNEI-LLPGM-P---P--LEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWL 231 (467)
Q Consensus 159 ~~~p~~~~~~-~~P~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 231 (467)
.+.+.. .. .+|+. | . +...+++.+.............+. +......+++++++|||.+||+. .++.+
T Consensus 160 ~~~~~~--~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~---~l~~l 233 (472)
T PLN02670 160 LRSTAE--DFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPE---WFDLL 233 (472)
T ss_pred CCCccc--cccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHH---HHHHH
Confidence 111111 11 13332 1 1 233455554432222222233344 44455677889999999999999 89888
Q ss_pred hhc--CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhC
Q 012277 232 RKT--WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS 309 (467)
Q Consensus 232 ~~~--~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~ 309 (467)
+.. .+++.|||+.+... . . ..+.. .. ....+++.+|||.+++++||||||||....+.+++.+++.+|+.+
T Consensus 234 ~~~~~~~v~~VGPl~~~~~-~-~-~~~~~--~~--~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s 306 (472)
T PLN02670 234 SDLYRKPIIPIGFLPPVIE-D-D-EEDDT--ID--VKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKS 306 (472)
T ss_pred HHhhCCCeEEEecCCcccc-c-c-ccccc--cc--cchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 664 36999999975311 0 0 00000 00 011257999999988899999999999999999999999999999
Q ss_pred CCcEEEEEeCCc------cCcCCccccccccCCCcEE-EEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecC
Q 012277 310 DQHFLWVVRESE------QAKLPKKFSDETLTSHKSL-VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMP 382 (467)
Q Consensus 310 ~~~~i~~~~~~~------~~~l~~~~~~~~~~~~~v~-~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P 382 (467)
+.+|+|++.... ...+|++|.++ ..++.. +.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 307 ~~~FlWv~r~~~~~~~~~~~~lp~~f~~~--~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 384 (472)
T PLN02670 307 ETPFFWVLRNEPGTTQNALEMLPDGFEER--VKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP 384 (472)
T ss_pred CCCEEEEEcCCcccccchhhcCChHHHHh--ccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc
Confidence 999999997521 12478888777 445444 459999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHhHhccccccC--C----cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Q 012277 383 QWSDQSTNAKYILDVWKTGLKFP--I----VKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEF 456 (467)
Q Consensus 383 ~~~DQ~~na~~v~~~~G~G~~l~--~----~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 456 (467)
++.||+.||+++++. |+|+.++ + ++.++|.++|+++|.++++++||+||+++++.+++. +...+.+++|
T Consensus 385 ~~~DQ~~Na~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~ 459 (472)
T PLN02670 385 VLNEQGLNTRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDEL 459 (472)
T ss_pred chhccHHHHHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHH
Confidence 999999999999998 9999985 2 899999999999998877779999999999999964 6668999999
Q ss_pred HHHHHhccC
Q 012277 457 VASLACSKN 465 (467)
Q Consensus 457 ~~~l~~~~~ 465 (467)
++.|+..++
T Consensus 460 ~~~l~~~~~ 468 (472)
T PLN02670 460 VHYLRENRS 468 (472)
T ss_pred HHHHHHhcc
Confidence 999998764
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-57 Score=457.27 Aligned_cols=425 Identities=24% Similarity=0.428 Sum_probs=323.5
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEEEeCccccccc-------cCCCC--CCCcceEecCCCCCCCCCCC
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSL-------HRDSS--SSSIPLEAISDGYDEGGYAQ 81 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~-------~~~~~--~~g~~~~~~~~~~~~~~~~~ 81 (467)
++||+++|+++.||++|++.||+.|+.+| ..|||++++.+.... .+... ..++++..+|++.+. ...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-TTE- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-ccc-
Confidence 35999999999999999999999999998 889999998765421 11011 225899999866543 111
Q ss_pred ccCHHHHHHHHHHhCchhHHHHHHHhcC-CCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCc--
Q 012277 82 AESIEAYLERFWQIGPQTLTELVEKMNG-SDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGS-- 158 (467)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~-~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~-- 158 (467)
......++..+.......++++++.... ...|++|||+|.++.|+..+|+++|||++.|++++++.++++.+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~ 159 (481)
T PLN02554 80 DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDE 159 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccc
Confidence 1122233333333333333333332221 1234589999999999999999999999999999999998887763211
Q ss_pred --cc---CCCCCCeeeCCCCC-CCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHh
Q 012277 159 --LE---LPLTGNEILLPGMP-PLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLR 232 (467)
Q Consensus 159 --~~---~p~~~~~~~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 232 (467)
.+ .+....+..+|+++ ++...+++.+... ..+...+. +......+++++++||+.+|+.. ....+.
T Consensus 160 ~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~-~~~~~~~~~~gvlvNt~~eLe~~---~~~~l~ 231 (481)
T PLN02554 160 KKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFL-AQARRFREMKGILVNTVAELEPQ---ALKFFS 231 (481)
T ss_pred cccCccccCCCCceeECCCCCCCCCHHHCCCcccC----HHHHHHHH-HHHHhcccCCEEEEechHHHhHH---HHHHHH
Confidence 11 11111345688873 5666677655421 12334444 55566778899999999999998 777775
Q ss_pred h----cCCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhh
Q 012277 233 K----TWSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKS 308 (467)
Q Consensus 233 ~----~~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~ 308 (467)
. .++++.|||+..... +... .. ...+.++.+|++.++++++|||||||....+.+++++++.+|+.
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~-----~~~~---~~--~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~ 301 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLEN-----SGDD---SK--DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALER 301 (481)
T ss_pred hcccCCCCEEEeCCCccccc-----cccc---cc--cccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHH
Confidence 3 235999999943211 0000 00 12346899999998888999999999988899999999999999
Q ss_pred CCCcEEEEEeCCc--------------cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHh
Q 012277 309 SDQHFLWVVRESE--------------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL 374 (467)
Q Consensus 309 ~~~~~i~~~~~~~--------------~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~ 374 (467)
+|.+|||++.... ...+|++|.++ .++|+++++|+||.+||+|+++++||||||+||++||+++
T Consensus 302 ~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r--~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~ 379 (481)
T PLN02554 302 SGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR--TKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWF 379 (481)
T ss_pred cCCCeEEEEcCCcccccccccccccchhhhCChHHHHH--hccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHc
Confidence 9999999996521 11257888877 7789999999999999999999999999999999999999
Q ss_pred CCCeeecCCccchhhHH-HHHHhHhccccccC-------------CcCHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHH
Q 012277 375 GVPMVAMPQWSDQSTNA-KYILDVWKTGLKFP-------------IVKRDAIADCISEILE-GERGKELRRNAGKWRKLA 439 (467)
Q Consensus 375 GvP~v~~P~~~DQ~~na-~~v~~~~G~G~~l~-------------~~~~~~l~~~i~~vl~-~~~~~~~~~~a~~l~~~~ 439 (467)
|||||++|+++||+.|| .+++++ |+|+.++ .++.++|.++|+++|. ++ +||+||+++++.+
T Consensus 380 GVP~l~~P~~~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r~~a~~l~~~~ 455 (481)
T PLN02554 380 GVPMAAWPLYAEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVRKRVKEMSEKC 455 (481)
T ss_pred CCCEEecCccccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHHHHHHHHHHHH
Confidence 99999999999999999 557888 9998873 4799999999999997 54 9999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhc
Q 012277 440 KEAVAKGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 440 ~~~~~~gg~~~~~~~~~~~~l~~~ 463 (467)
++++++||++..++++|+++|+.+
T Consensus 456 ~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 456 HVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHhcCCChHHHHHHHHHHHHHhh
Confidence 999999999999999999999865
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4e-57 Score=445.35 Aligned_cols=417 Identities=26% Similarity=0.412 Sum_probs=318.4
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEE--EeCccccccc----cCC-CCCCCcceEecCCCCCC-CCCCCc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTL--VTTRFFYKSL----HRD-SSSSSIPLEAISDGYDE-GGYAQA 82 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~--~~~~~~~~~~----~~~-~~~~g~~~~~~~~~~~~-~~~~~~ 82 (467)
..||+++|+++.||++|++.||+.|+.+| +.|++ ..++.+...+ .+. ....++++..+|++.+. ......
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 45555 5554432221 110 01236999999876532 111111
Q ss_pred cCHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCc--cc
Q 012277 83 ESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGS--LE 160 (467)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~--~~ 160 (467)
......+..+.......+.++++.+.. ..|+++||+|.+..|+..+|+++|||++.|++++++.++++.+..... .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 223334444444566667777777632 245699999999999999999999999999999999888887653211 11
Q ss_pred CC--CCCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc---C
Q 012277 161 LP--LTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT---W 235 (467)
Q Consensus 161 ~p--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~ 235 (467)
.+ .+..+..+|++|.+...+++.+..... ....+.+. +......+++.+++||+++||+. .++.+.+. .
T Consensus 162 ~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~~~~vl~NTf~eLE~~---~l~~l~~~~~~~ 235 (451)
T PLN03004 162 GKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFI-MFGKQLSKSSGIIINTFDALENR---AIKAITEELCFR 235 (451)
T ss_pred ccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHH-HHHHhhcccCeeeeeeHHHhHHH---HHHHHHhcCCCC
Confidence 11 112345689998888888887653221 22334444 55556677889999999999999 88888653 2
Q ss_pred CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEE
Q 012277 236 SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLW 315 (467)
Q Consensus 236 ~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 315 (467)
+++.|||+.+... . . . +. .+ ...++.+|||.+++++||||||||....+.+++++++.+|+.++.+|+|
T Consensus 236 ~v~~vGPl~~~~~----~-~--~-~~-~~--~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 236 NIYPIGPLIVNGR----I-E--D-RN-DN--KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CEEEEeeeccCcc----c-c--c-cc-cc--hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 6999999975310 0 0 0 00 11 1356899999988899999999999999999999999999999999999
Q ss_pred EEeCCc--------cC-cCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccc
Q 012277 316 VVRESE--------QA-KLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSD 386 (467)
Q Consensus 316 ~~~~~~--------~~-~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~D 386 (467)
++.... .. .+|++|.+++ ...++.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.|
T Consensus 305 ~~r~~~~~~~~~~~~~~~lp~gf~er~-~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 305 VVRNPPELEKTELDLKSLLPEGFLSRT-EDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EEcCCccccccccchhhhCChHHHHhc-cCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 998431 11 2788888874 2357888899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhHhccccccC-----CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHH
Q 012277 387 QSTNAKYILDVWKTGLKFP-----IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDS 451 (467)
Q Consensus 387 Q~~na~~v~~~~G~G~~l~-----~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 451 (467)
|+.||+++++.||+|+.++ .++.++|.++|++++.++ +||+++++++++.+.++++||++.+
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred chhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999986339999996 369999999999999987 9999999999999999999999853
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-56 Score=442.66 Aligned_cols=412 Identities=22% Similarity=0.380 Sum_probs=305.6
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCC-CCCcceEec--C--CCCCCCCCCCccCHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSS-SSSIPLEAI--S--DGYDEGGYAQAESIEA 87 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~-~~g~~~~~~--~--~~~~~~~~~~~~~~~~ 87 (467)
+.||+++|+++.||++|++.||+.|+.+||+|||++++.+...+..... ..++.+..+ + ++++. +......+..
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l~~ 82 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPA-GAETTSDIPI 82 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCC-CcccccchhH
Confidence 5799999999999999999999999999999999999988776653211 123455544 3 34544 3222223332
Q ss_pred HHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCe
Q 012277 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE 167 (467)
Q Consensus 88 ~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (467)
.+..++......+.+.++++.++ .++|+||+| ++.|+..+|+++|||++.|++++++... +.+.......
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~-~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~~------- 152 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRA-LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKLG------- 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCccccC-------
Confidence 33333222222333333433322 246999999 6789999999999999999999887654 2222211111
Q ss_pred eeCCCCCCC----CCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc--CCeeeec
Q 012277 168 ILLPGMPPL----EPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT--WSLRTIG 241 (467)
Q Consensus 168 ~~~P~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~vg 241 (467)
..+|++|.. ...+++.+ . ........+..+......+++.+++||+.+||+. +++.+... .+++.||
T Consensus 153 ~~~pglp~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~---~~~~~~~~~~~~v~~vG 225 (442)
T PLN02208 153 VPPPGYPSSKVLFRENDAHAL-A---TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGK---FCDYISRQYHKKVLLTG 225 (442)
T ss_pred CCCCCCCCcccccCHHHcCcc-c---ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHH---HHHHHHhhcCCCEEEEe
Confidence 124666542 33344432 1 1112223333133345567899999999999999 88887654 2599999
Q ss_pred ccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCc
Q 012277 242 PTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESE 321 (467)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 321 (467)
|+.+... .. .++++++.+|||.++++++|||||||....+.+.+.+++.+++..+.+++|+.....
T Consensus 226 pl~~~~~--------~~------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~ 291 (442)
T PLN02208 226 PMFPEPD--------TS------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR 291 (442)
T ss_pred ecccCcC--------CC------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 9976411 00 123578999999988889999999999988999999999988888888888887431
Q ss_pred -----cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHh
Q 012277 322 -----QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILD 396 (467)
Q Consensus 322 -----~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 396 (467)
...+|++|.+++ ...|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++
T Consensus 292 ~~~~~~~~lp~~f~~r~-~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~ 370 (442)
T PLN02208 292 GSSTVQEGLPEGFEERV-KGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTE 370 (442)
T ss_pred cccchhhhCCHHHHHHH-hcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHH
Confidence 135788887774 24577777999999999999999999999999999999999999999999999999998777
Q ss_pred -HhccccccC--C---cCHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 397 -VWKTGLKFP--I---VKRDAIADCISEILEGE--RGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 397 -~~G~G~~l~--~---~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
+ |+|+.++ + ++.++|.++|+++++++ .++++|++++++++.+. .+|++..++++|+++|++
T Consensus 371 ~~-g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 371 EF-EVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred Hh-ceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 6 9999996 3 89999999999999764 36789999999999985 378899999999999965
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-56 Score=446.98 Aligned_cols=430 Identities=27% Similarity=0.441 Sum_probs=321.5
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCC---EEEEEeCccccc-----cccCC-CCCCCcceEecCCCCCCCCCCC-
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGI---KVTLVTTRFFYK-----SLHRD-SSSSSIPLEAISDGYDEGGYAQ- 81 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh---~V~~~~~~~~~~-----~~~~~-~~~~g~~~~~~~~~~~~~~~~~- 81 (467)
+..||+++|+++.||++|++.||+.|+.+|. .||+..+..... .+... ....++.|..+|+...+...+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 3569999999999999999999999999983 567777543221 11110 1123699999986542201110
Q ss_pred ccCHHHHHHHHHHhCchhHHHHHHHhcCC----CC-CccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhc
Q 012277 82 AESIEAYLERFWQIGPQTLTELVEKMNGS----DS-PVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKK 156 (467)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~~----~~-~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 156 (467)
.......+..+...+...+++.++.+..+ .. |++|||+|.++.|+..+|+++|||++.|++++++.++++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 11122233334444555666666665321 12 56999999999999999999999999999999988887765421
Q ss_pred --Cccc--CC--CCCCeeeCCCC-CCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHH
Q 012277 157 --GSLE--LP--LTGNEILLPGM-PPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVE 229 (467)
Q Consensus 157 --~~~~--~p--~~~~~~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 229 (467)
.... .+ ....+..+|++ +.+...+++.+..... ..+.+. +.......++.+++|||++||+. .++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~-~~~~~~~~a~~vlvNTf~eLE~~---~~~ 233 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWV-EIAERFPEAKGILVNSFTELEPN---AFD 233 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHH-HHHHhhcccCEeeeccHHHHHHH---HHH
Confidence 1111 11 11234568887 3466666665442221 123334 44455677889999999999998 888
Q ss_pred HHhhc----CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHH
Q 012277 230 WLRKT----WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWG 305 (467)
Q Consensus 230 ~~~~~----~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 305 (467)
.+... ++++.|||+.+... .. . ..++.....++.+|++.++++++|||||||....+.+++.+++.+
T Consensus 234 ~l~~~~~~~p~v~~vGpl~~~~~---~~--~----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~ 304 (475)
T PLN02167 234 YFSRLPENYPPVYPVGPILSLKD---RT--S----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQA 304 (475)
T ss_pred HHHhhcccCCeeEEecccccccc---cc--C----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHH
Confidence 87543 35999999976411 00 0 001111246799999998888999999999988899999999999
Q ss_pred HhhCCCcEEEEEeCCc------cCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCee
Q 012277 306 LKSSDQHFLWVVRESE------QAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMV 379 (467)
Q Consensus 306 l~~~~~~~i~~~~~~~------~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v 379 (467)
|+.+|.+|||+++... ...+|++|.++ ..+++++++|+||.+||+|+++++||||||+||++||+++|||||
T Consensus 305 l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er--~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l 382 (475)
T PLN02167 305 LELVGCRFLWSIRTNPAEYASPYEPLPEGFMDR--VMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIA 382 (475)
T ss_pred HHhCCCcEEEEEecCcccccchhhhCChHHHHH--hccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEE
Confidence 9999999999997431 12478888777 667788899999999999999999999999999999999999999
Q ss_pred ecCCccchhhHHHH-HHhHhccccccC---------CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCc
Q 012277 380 AMPQWSDQSTNAKY-ILDVWKTGLKFP---------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSS 449 (467)
Q Consensus 380 ~~P~~~DQ~~na~~-v~~~~G~G~~l~---------~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 449 (467)
++|++.||+.||++ ++++ |+|+.+. .+++++|.++|+++|.++ ++||++|+++++.+++++.+||++
T Consensus 383 ~~P~~~DQ~~na~~~~~~~-g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS 459 (475)
T PLN02167 383 TWPMYAEQQLNAFTMVKEL-GLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSS 459 (475)
T ss_pred eccccccchhhHHHHHHHh-CeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcH
Confidence 99999999999976 6677 9998874 368999999999999764 389999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 012277 450 DSNIDEFVASLACS 463 (467)
Q Consensus 450 ~~~~~~~~~~l~~~ 463 (467)
..++++||++|+.+
T Consensus 460 ~~~l~~~v~~i~~~ 473 (475)
T PLN02167 460 FVAVKRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999865
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-56 Score=436.37 Aligned_cols=415 Identities=24% Similarity=0.411 Sum_probs=311.5
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCC-C--CCcceEecC--CCCCCCCCCCccCH-
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSS-S--SSIPLEAIS--DGYDEGGYAQAESI- 85 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~-~--~g~~~~~~~--~~~~~~~~~~~~~~- 85 (467)
.++||+++|+++.||++|++.||+.|+.+|+.|||++++.+...+..... . ..+.+.++| +++++ +.+...+.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~-g~e~~~~~~ 82 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPV-GTETVSEIP 82 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCC-cccccccCC
Confidence 35799999999999999999999999999999999999987665542111 1 126677776 55554 32221111
Q ss_pred ---HHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCC
Q 012277 86 ---EAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELP 162 (467)
Q Consensus 86 ---~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p 162 (467)
...+..........+.++++.+ ++|+||+| +..|+..+|+++|||++.|+++++..++++.. .....
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~--- 152 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL--- 152 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC---
Confidence 1122222223334445555442 46999999 48899999999999999999999888777653 11111
Q ss_pred CCCCeeeCCCCCC----CCCCCCCCccccCC--CchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc--
Q 012277 163 LTGNEILLPGMPP----LEPQDMPSFIHDLG--SYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT-- 234 (467)
Q Consensus 163 ~~~~~~~~P~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-- 234 (467)
...+|++|. +...+++.+..... .......... +........+.+++||+.+||+. +++.+.+.
T Consensus 153 ----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~vlvNTf~eLE~~---~~~~~~~~~~ 224 (453)
T PLN02764 153 ----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLE-RVTTSLMNSDVIAIRTAREIEGN---FCDYIEKHCR 224 (453)
T ss_pred ----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHH-HHHHhhccCCEEEEeccHHhhHH---HHHHHHhhcC
Confidence 112466652 33344444321111 1111223333 44355677889999999999999 88888664
Q ss_pred CCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEE
Q 012277 235 WSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFL 314 (467)
Q Consensus 235 ~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 314 (467)
.+++.|||+.+... .. ...+.++.+|||.+++++||||||||....+.+++.+++.+|+..+.+++
T Consensus 225 ~~v~~VGPL~~~~~------~~--------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pfl 290 (453)
T PLN02764 225 KKVLLTGPVFPEPD------KT--------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFL 290 (453)
T ss_pred CcEEEeccCccCcc------cc--------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeE
Confidence 25999999975410 00 01246789999999999999999999998899999999999999999999
Q ss_pred EEEeCC-----ccCcCCccccccccCCCcE-EEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchh
Q 012277 315 WVVRES-----EQAKLPKKFSDETLTSHKS-LVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQS 388 (467)
Q Consensus 315 ~~~~~~-----~~~~l~~~~~~~~~~~~~v-~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~ 388 (467)
|++... ....+|++|.++ ..++. .+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+
T Consensus 291 wv~r~~~~~~~~~~~lp~~f~~r--~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 368 (453)
T PLN02764 291 VAVKPPRGSSTIQEALPEGFEER--VKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQV 368 (453)
T ss_pred EEEeCCCCCcchhhhCCcchHhh--hccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchH
Confidence 999742 123689999888 44544 5559999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhccccccC-----CcCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012277 389 TNAKYILDVWKTGLKFP-----IVKRDAIADCISEILEG--ERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 461 (467)
Q Consensus 389 ~na~~v~~~~G~G~~l~-----~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 461 (467)
.||+++++.||+|+.+. .++.++|.++|+++|.+ +.++++|++++++++++++ ||++..++++|++++.
T Consensus 369 ~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~ 444 (453)
T PLN02764 369 LNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQ 444 (453)
T ss_pred HHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence 99999965339999874 38999999999999987 4467799999999999974 8999999999999999
Q ss_pred hccC
Q 012277 462 CSKN 465 (467)
Q Consensus 462 ~~~~ 465 (467)
...+
T Consensus 445 ~~~~ 448 (453)
T PLN02764 445 DLVS 448 (453)
T ss_pred Hhcc
Confidence 7654
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-55 Score=434.72 Aligned_cols=414 Identities=23% Similarity=0.405 Sum_probs=305.6
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-CCCCcceEecC----CCCCCCCCCCccCHH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAIS----DGYDEGGYAQAESIE 86 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~g~~~~~~~----~~~~~~~~~~~~~~~ 86 (467)
++.||+++|+++.||++|++.||+.|+.+|++|||++++.+...++... ...++.+..++ +++++ +.....++.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l~ 81 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPF-GAETASDLP 81 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCC-cccccccch
Confidence 4569999999999999999999999999999999999998876664211 11246774443 45554 322222221
Q ss_pred HHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCC
Q 012277 87 AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGN 166 (467)
Q Consensus 87 ~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 166 (467)
.............+.+.++.+.+. .++|+||+| ++.|+..+|+++|||++.|+++++....++.+... ...
T Consensus 82 ~~~~~~~~~a~~~l~~~l~~~L~~-~~p~cVV~D-~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~-~~~------ 152 (446)
T PLN00414 82 NSTKKPIFDAMDLLRDQIEAKVRA-LKPDLIFFD-FVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA-ELG------ 152 (446)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEC-CchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-hcC------
Confidence 111212222222344444443332 346999999 48899999999999999999999888877765221 000
Q ss_pred eeeCCCCCCC----CCCC--CCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcC--Cee
Q 012277 167 EILLPGMPPL----EPQD--MPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTW--SLR 238 (467)
Q Consensus 167 ~~~~P~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~ 238 (467)
..+|++|.. ...+ ++.++.. ....+. +......+++.+++|||.+||+. +++.+.... +++
T Consensus 153 -~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~---~~~~~~~~~~~~v~ 221 (446)
T PLN00414 153 -FPPPDYPLSKVALRGHDANVCSLFAN------SHELFG-LITKGLKNCDVVSIRTCVELEGN---LCDFIERQCQRKVL 221 (446)
T ss_pred -CCCCCCCCCcCcCchhhcccchhhcc------cHHHHH-HHHHhhccCCEEEEechHHHHHH---HHHHHHHhcCCCeE
Confidence 123555431 1111 1121211 112333 44455677889999999999999 888886542 599
Q ss_pred eecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEe
Q 012277 239 TIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVR 318 (467)
Q Consensus 239 ~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 318 (467)
.|||+.+... ..+ + .....++.+|||.+++++||||||||......+++.+++.+|+..|.+|+|++.
T Consensus 222 ~VGPl~~~~~-----~~~---~----~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr 289 (446)
T PLN00414 222 LTGPMLPEPQ-----NKS---G----KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVM 289 (446)
T ss_pred EEcccCCCcc-----ccc---C----cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 9999975410 000 0 112356889999999999999999999999999999999999999999999996
Q ss_pred CC-----ccCcCCccccccccCCCcEEEE-eccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHH
Q 012277 319 ES-----EQAKLPKKFSDETLTSHKSLVV-SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAK 392 (467)
Q Consensus 319 ~~-----~~~~l~~~~~~~~~~~~~v~~~-~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~ 392 (467)
.. ..+.+|++|.++ ..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 290 ~~~~~~~~~~~lp~~f~~r--~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~ 367 (446)
T PLN00414 290 PPKGSSTVQEALPEGFEER--VKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITR 367 (446)
T ss_pred cCCCcccchhhCChhHHHH--hcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHH
Confidence 52 123689999888 55666555 99999999999999999999999999999999999999999999999999
Q ss_pred HHH-hHhccccccC-----CcCHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 012277 393 YIL-DVWKTGLKFP-----IVKRDAIADCISEILEGE--RGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSK 464 (467)
Q Consensus 393 ~v~-~~~G~G~~l~-----~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~~ 464 (467)
+++ +. |+|..+. .++.++|.++++++|.++ .++++|++++++++.+. ++||++ ..+++|+++++..+
T Consensus 368 ~~~~~~-g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 368 LLTEEL-EVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALENEV 442 (446)
T ss_pred HHHHHh-CeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHHhc
Confidence 996 56 9999985 289999999999999763 35679999999999975 457744 44899999998665
Q ss_pred C
Q 012277 465 N 465 (467)
Q Consensus 465 ~ 465 (467)
+
T Consensus 443 ~ 443 (446)
T PLN00414 443 N 443 (446)
T ss_pred c
Confidence 4
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.7e-47 Score=381.28 Aligned_cols=401 Identities=16% Similarity=0.205 Sum_probs=277.3
Q ss_pred CCCcEEEEE-cCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCC--CCCCc-----
Q 012277 11 CKLAHCLVL-TYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEG--GYAQA----- 82 (467)
Q Consensus 11 ~~~~~il~~-~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~----- 82 (467)
....|||++ |..+.+|..-+.+|+++|++|||+||++++.... .... ....++..+.++...+.. .....
T Consensus 18 ~~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 18 VRAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYAS-HLCGNITEIDASLSVEYFKKLVKSSAVFRK 95 (507)
T ss_pred cCcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cccc-CCCCCEEEEEcCCChHHHHHHHhhhhHHHh
Confidence 456789955 7789999999999999999999999999775321 1110 012345544443110000 00000
Q ss_pred -c---CH----HHHHHHHHHhCchhHH--HHHHHhcCCCCCccEEEECCchhhHHHHHHHc-CCCceeeeccchHHHHHH
Q 012277 83 -E---SI----EAYLERFWQIGPQTLT--ELVEKMNGSDSPVDCIVYDSILLWALDVAKKF-GLLGAPFLTQSCAVDYIY 151 (467)
Q Consensus 83 -~---~~----~~~~~~~~~~~~~~l~--~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~~~~ 151 (467)
. +. ......+...+...+. .+.+.+.....++|+||+|.+..|+..+|+.+ ++|.|.+++...... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~--~ 173 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE--N 173 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh--H
Confidence 0 00 0011111222222221 22233331224699999998889999999999 999888877543221 1
Q ss_pred hhhhcCcccCCCCCCeeeCCCCCCCCCCCCCCccccCCCch--------------hHHHHHHHHHhh--------hhcCC
Q 012277 152 YHVKKGSLELPLTGNEILLPGMPPLEPQDMPSFIHDLGSYP--------------AVSYMMMKFQFE--------NIDKA 209 (467)
Q Consensus 152 ~~~~~~~~~~p~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--------~~~~~ 209 (467)
..... .. | ..+.|+|.+ .....+.+++++|..+.- ...+... +.+. ...+.
T Consensus 174 ~~~~g-g~--p--~~~syvP~~-~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~-~~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 174 FETMG-AV--S--RHPVYYPNL-WRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLK-QQFGPDTPTIRELRNRV 246 (507)
T ss_pred HHhhc-cC--C--CCCeeeCCc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHcCCCCCCHHHHHhCC
Confidence 11111 11 2 226788877 456667888888765531 1111111 3321 11234
Q ss_pred cEEEEcchhhhhhhHHHHHHHHhhcCC-eeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEee
Q 012277 210 DWVLCNTFYELEEEVAVVVEWLRKTWS-LRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSY 288 (467)
Q Consensus 210 ~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~ 288 (467)
+.+++|+.+.++.+ ++.++ +.+|||+..+.. . ..++++++.+|++.. ++++|||||
T Consensus 247 ~l~lvns~~~~d~~--------rp~~p~v~~vGgi~~~~~------~--------~~~l~~~l~~fl~~~-~~g~V~vS~ 303 (507)
T PHA03392 247 QLLFVNVHPVFDNN--------RPVPPSVQYLGGLHLHKK------P--------PQPLDDYLEEFLNNS-TNGVVYVSF 303 (507)
T ss_pred cEEEEecCccccCC--------CCCCCCeeeecccccCCC------C--------CCCCCHHHHHHHhcC-CCcEEEEEC
Confidence 68899999988877 44444 999999865411 0 134578999999974 468999999
Q ss_pred cccc---cCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCCh
Q 012277 289 GSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGW 365 (467)
Q Consensus 289 Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~ 365 (467)
||.. ..+.++++.+++++++++.++||+.++.. .+.+ .|+|+++.+|+||.+||+|+.+++||||||.
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~---~~~~------~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~ 374 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV---EAIN------LPANVLTQKWFPQRAVLKHKNVKAFVTQGGV 374 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc---Cccc------CCCceEEecCCCHHHHhcCCCCCEEEecCCc
Confidence 9986 35789999999999999999999997532 1111 7899999999999999998888889999999
Q ss_pred hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Q 012277 366 NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAV 443 (467)
Q Consensus 366 ~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~ 443 (467)
||++||+++|||+|++|++.||+.||+|++++ |+|+.++ +++.++|.++|+++++|+ +|+++|+++++.+++.
T Consensus 375 ~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~~~t~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~- 449 (507)
T PHA03392 375 QSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTVTVSAAQLVLAIVDVIENP---KYRKNLKELRHLIRHQ- 449 (507)
T ss_pred ccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccCCcCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhC-
Confidence 99999999999999999999999999999999 9999998 899999999999999997 9999999999999963
Q ss_pred HcCCCcHHHHHHHHHHHH
Q 012277 444 AKGGSSDSNIDEFVASLA 461 (467)
Q Consensus 444 ~~gg~~~~~~~~~~~~l~ 461 (467)
+-...+.+..-++.+.
T Consensus 450 --p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 450 --PMTPLHKAIWYTEHVI 465 (507)
T ss_pred --CCCHHHHHHHHHHHHH
Confidence 3223344444444443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.2e-47 Score=388.02 Aligned_cols=373 Identities=25% Similarity=0.353 Sum_probs=225.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCc-cC---------
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQA-ES--------- 84 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~--------- 84 (467)
|||++|. ++||+.++..|+++|++|||+||++++......-. .....+.+..++...+....... .+
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNP--SKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSES 78 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT--------S-CCEEEE-----TT------TTHHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccccccc--ccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhc
Confidence 7888885 77999999999999999999999999865332221 12456777777654433111111 00
Q ss_pred -----HHHHHHHH---H----HhCc-----hhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHH
Q 012277 85 -----IEAYLERF---W----QIGP-----QTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAV 147 (467)
Q Consensus 85 -----~~~~~~~~---~----~~~~-----~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 147 (467)
....+..+ . ..|. ..+.+.++. .++|++|+|.+..|+..+|+.+++|.+.+++.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-----~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 79 SFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-----EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp CCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-----HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----hccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 00011100 0 0110 011112222 248999999998999999999999998765432110
Q ss_pred HHHHhhhhcCcccCCCCCCeeeCCCCCCCCCCCCCCccccCCCchh--HHHHHHHHHhhhh-cC----------------
Q 012277 148 DYIYYHVKKGSLELPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPA--VSYMMMKFQFENI-DK---------------- 208 (467)
Q Consensus 148 ~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~---------------- 208 (467)
. ........| ..+.|+|.+ .....+.+.+.+|..+.-. ..+... ...... ..
T Consensus 154 ~-----~~~~~~g~p--~~psyvP~~-~s~~~~~msf~~Ri~N~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (500)
T PF00201_consen 154 D-----LSSFSGGVP--SPPSYVPSM-FSDFSDRMSFWQRIKNFLFYLYFRFIF-RYFFSPQDKLYKKYFGFPFSFRELL 224 (500)
T ss_dssp C-----CTCCTSCCC--TSTTSTTCB-CCCSGTTSSSST--TTSHHHHHHHHHH-HHGGGS-TTS-EEESS-GGGCHHHH
T ss_pred h-----hhhhccCCC--CChHHhccc-cccCCCccchhhhhhhhhhhhhhcccc-ccchhhHHHHHhhhcccccccHHHH
Confidence 0 000000111 235577765 3455677888887776431 112222 211111 00
Q ss_pred --CcEEEEcchhhhhhhHHHHHHHHhhcC-CeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEE
Q 012277 209 --ADWVLCNTFYELEEEVAVVVEWLRKTW-SLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVY 285 (467)
Q Consensus 209 --~~~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~ 285 (467)
.+..++++.+.++.+ ++.. ++.+||++..+. ..|+++++.+|++..+++++||
T Consensus 225 ~~~~l~l~ns~~~ld~p--------rp~~p~v~~vGgl~~~~----------------~~~l~~~~~~~~~~~~~~~vv~ 280 (500)
T PF00201_consen 225 SNASLVLINSHPSLDFP--------RPLLPNVVEVGGLHIKP----------------AKPLPEELWNFLDSSGKKGVVY 280 (500)
T ss_dssp HHHHHCCSSTEEE------------HHHHCTSTTGCGC-S--------------------TCHHHHHHHTSTTTTTEEEE
T ss_pred HHHHHHhhhccccCcCC--------cchhhcccccCcccccc----------------ccccccccchhhhccCCCCEEE
Confidence 111233333333322 1111 255556553331 2356788999999756789999
Q ss_pred Eeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCC
Q 012277 286 VSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCG 364 (467)
Q Consensus 286 vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG 364 (467)
|||||... .+.+..+.+++++++++++|||++.+... .+ +++|+++.+|+||.+||+|+++++||||||
T Consensus 281 vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~----~~------l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG 350 (500)
T PF00201_consen 281 VSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP----EN------LPKNVLIVKWLPQNDLLAHPRVKLFITHGG 350 (500)
T ss_dssp EE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG----CH------HHTTEEEESS--HHHHHTSTTEEEEEES--
T ss_pred EecCcccchhHHHHHHHHHHHHhhCCCccccccccccc----cc------ccceEEEeccccchhhhhcccceeeeeccc
Confidence 99999974 45556888999999999999999966211 11 678999999999999999999999999999
Q ss_pred hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Q 012277 365 WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEA 442 (467)
Q Consensus 365 ~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~ 442 (467)
+||+.||+++|||+|++|+++||+.||+++++. |+|..++ +++.++|.++|+++|+|+ +|++||+++++.+++.
T Consensus 351 ~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 351 LNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLENP---SYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHSH---HHHHHHHHHHHTTT--
T ss_pred cchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999 9999998 999999999999999998 9999999999999964
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.9e-43 Score=350.55 Aligned_cols=374 Identities=23% Similarity=0.299 Sum_probs=252.7
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCc---cCHHHHHHHHHHh
Q 012277 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQA---ESIEAYLERFWQI 95 (467)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 95 (467)
+++|+.||++|++.||++|++|||+|+|++++.+.+.++ ..|+.+.+++...+....... .+....+..+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVE----AAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDE 76 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHH----HcCCEEEecCCcCccccccccccCcchHHHHHHHHHH
Confidence 367899999999999999999999999999999999998 689999999865433111111 2334444445444
Q ss_pred CchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCCCCCC
Q 012277 96 GPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGMPP 175 (467)
Q Consensus 96 ~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P~~~~ 175 (467)
....+..+.+.+.+ . ++|+||+|.++.++..+|+.+|||+|.+++.+.... . . +....+ .-+.+
T Consensus 77 ~~~~~~~l~~~~~~-~-~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~-----~--~~~~~~-~~~~~-- 140 (392)
T TIGR01426 77 AEDVLPQLEEAYKG-D-RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----E-----F--EEMVSP-AGEGS-- 140 (392)
T ss_pred HHHHHHHHHHHhcC-C-CCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----c-----c--cccccc-cchhh--
Confidence 44444444444333 2 369999999888999999999999998865331110 0 0 000000 00000
Q ss_pred CCCCCCCCccccCCCchhHHHHHHHHHh-h-----h--hcCCcEEEEcchhhhhhhHHHHHHHHhhcC--CeeeecccCC
Q 012277 176 LEPQDMPSFIHDLGSYPAVSYMMMKFQF-E-----N--IDKADWVLCNTFYELEEEVAVVVEWLRKTW--SLRTIGPTIP 245 (467)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~~vgp~~~ 245 (467)
.......... .......+.+++. +.. . . ....+..+....+.|.++ .+.+ ++.++||+..
T Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~r~-~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~--------~~~~~~~~~~~Gp~~~ 210 (392)
T TIGR01426 141 AEEGAIAERG-LAEYVARLSALLE-EHGITTPPVEFLAAPRRDLNLVYTPKAFQPA--------GETFDDSFTFVGPCIG 210 (392)
T ss_pred hhhhccccch-hHHHHHHHHHHHH-HhCCCCCCHHHHhcCCcCcEEEeCChHhCCC--------ccccCCCeEEECCCCC
Confidence 0000000000 0000011111111 110 0 0 011112345555555543 2222 3889998765
Q ss_pred CccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcC
Q 012277 246 SFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKL 325 (467)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l 325 (467)
.. .+...|.....++++||+|+||......++++.+++++++.+.+++|+.+.....
T Consensus 211 ~~---------------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~-- 267 (392)
T TIGR01426 211 DR---------------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP-- 267 (392)
T ss_pred Cc---------------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh--
Confidence 41 1111255445678899999999876666789999999999999999888653211
Q ss_pred CccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC
Q 012277 326 PKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 405 (467)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 405 (467)
+.+.+ .++|+.+.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||+.||++++++ |+|..+.
T Consensus 268 -~~~~~---~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~ 340 (392)
T TIGR01426 268 -ADLGE---LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLP 340 (392)
T ss_pred -hHhcc---CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEec
Confidence 11111 6789999999999999999999 999999999999999999999999999999999999999 9999987
Q ss_pred --CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012277 406 --IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 460 (467)
Q Consensus 406 --~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 460 (467)
++++++|.++|.++|+|+ +|+++++++++.+++. +| . +.+.++++++
T Consensus 341 ~~~~~~~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~~---~~-~-~~aa~~i~~~ 389 (392)
T TIGR01426 341 PEEVTAEKLREAVLAVLSDP---RYAERLRKMRAEIREA---GG-A-RRAADEIEGF 389 (392)
T ss_pred cccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHc---CC-H-HHHHHHHHHh
Confidence 889999999999999997 9999999999999863 33 3 4444555444
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7.5e-43 Score=347.87 Aligned_cols=361 Identities=17% Similarity=0.193 Sum_probs=239.1
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCC--CCC--------Ccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEG--GYA--------QAE 83 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~--------~~~ 83 (467)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...++ ..|+.|.++++..+.. ... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE----AAGLEFVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH----HcCCceeeCCCCHHHHHhhhhhcccccccchH
Confidence 69999999999999999999999999999999999999998888 6899999998643220 000 011
Q ss_pred CHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCC
Q 012277 84 SIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPL 163 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (467)
........+.......+.++.+.+.+ .++|+||+|.+..++..+|+++|||+|.++++++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-------------- 140 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS-------------- 140 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc--------------
Confidence 22233334444445555555555432 34699999998888999999999999998876522110
Q ss_pred CCCeeeCCCCCCCCCCCCCCc--cccCCCchhHHHHHHHHHhhhhc--C-------CcEEEEcchhhhhhhHHHHHHHHh
Q 012277 164 TGNEILLPGMPPLEPQDMPSF--IHDLGSYPAVSYMMMKFQFENID--K-------ADWVLCNTFYELEEEVAVVVEWLR 232 (467)
Q Consensus 164 ~~~~~~~P~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~l~~~~~~l~~~~~~~~~~~~ 232 (467)
..| ++....+.... ............... +...... . .+..+....+.+.+. .
T Consensus 141 -----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~--------~ 204 (401)
T cd03784 141 -----AFP--PPLGRANLRLYALLEAELWQDLLGAWLR-ARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP--------P 204 (401)
T ss_pred -----cCC--CccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccCCCcEEEecCcccCCC--------C
Confidence 000 00000000000 000000000111111 1111111 0 011111111111100 0
Q ss_pred hcCC--eeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeeccccc-CCHHHHHHHHHHHhhC
Q 012277 233 KTWS--LRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVE-LKAEEMEELAWGLKSS 309 (467)
Q Consensus 233 ~~~~--~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~ 309 (467)
..++ ..++|......+ .-...+.++..|++. ++++||+|+||... ...+++..++++++..
T Consensus 205 ~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVP--------------YNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred CCccccCcEeCCCCCCCC--------------CCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 1111 223321111100 000124566777764 57899999999975 3457888899999999
Q ss_pred CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhh
Q 012277 310 DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST 389 (467)
Q Consensus 310 ~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~ 389 (467)
+.+++|+++...... . . .++|+++.+|+||.++|++|++ ||||||+||++||+++|||+|++|...||+.
T Consensus 269 ~~~~i~~~g~~~~~~--~----~--~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~ 338 (401)
T cd03784 269 GQRAILSLGWGGLGA--E----D--LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPF 338 (401)
T ss_pred CCeEEEEccCccccc--c----C--CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHH
Confidence 999999987643221 1 1 6789999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhHhccccccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 012277 390 NAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKE 441 (467)
Q Consensus 390 na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 441 (467)
||++++++ |+|..+. ++++++|.++|++++++ .++++++++++.+++
T Consensus 339 ~a~~~~~~-G~g~~l~~~~~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 339 WAARVAEL-GAGPALDPRELTAERLAAALRRLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred HHHHHHHC-CCCCCCCcccCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh
Confidence 99999999 9999997 77999999999999996 566677777777764
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3e-41 Score=331.00 Aligned_cols=386 Identities=21% Similarity=0.285 Sum_probs=245.2
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
+|||+++..|.+||++|+++|+++|.++||+|+|+|++.+.+.++ ..|+.|..++.. +. ............+.+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve----~ag~~f~~~~~~-~~-~~~~~~~~~~~~~~~ 74 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVE----AAGLAFVAYPIR-DS-ELATEDGKFAGVKSF 74 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHH----HhCcceeecccc-CC-hhhhhhhhhhccchh
Confidence 479999999999999999999999999999999999999999999 678778777754 22 111111222222222
Q ss_pred ---HHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeee
Q 012277 93 ---WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (467)
Q Consensus 93 ---~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (467)
.........+.++-+.+.+ +|+|+.|.....+ .+++..++|++.......+.... ..++.+.. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~e~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----~ 141 (406)
T COG1819 75 RRLLQQFKKLIRELLELLRELE--PDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPA------AGLPLPPV----G 141 (406)
T ss_pred HHHhhhhhhhhHHHHHHHHhcc--hhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcc------cccCcccc----c
Confidence 2222223334444444432 6999999666534 89999999998865543222111 00010000 0
Q ss_pred CCCCCCCCCCCCCCccccCCCchhHH--HHHHHHHhhhhcCC---cEEEEcchhhhhhhHHHHHHHHh---hcCC--eee
Q 012277 170 LPGMPPLEPQDMPSFIHDLGSYPAVS--YMMMKFQFENIDKA---DWVLCNTFYELEEEVAVVVEWLR---KTWS--LRT 239 (467)
Q Consensus 170 ~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~l~~~~~~l~~~~~~~~~~~~---~~~~--~~~ 239 (467)
+-+....................... .... +....+... -..+..+-+.+... +.+... ...| ..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~ 217 (406)
T COG1819 142 IAGKLPIPLYPLPPRLVRPLIFARSWLPKLVV-RRNLGLELGLPNIRRLFASGPLLEIA---YTDVLFPPGDRLPFIGPY 217 (406)
T ss_pred ccccccccccccChhhccccccchhhhhhhhh-hhhccccccccchHHHhcCCCCcccc---ccccccCCCCCCCCCcCc
Confidence 00000000000000000000000000 0000 000000000 00001111111111 000000 0000 122
Q ss_pred ecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeC
Q 012277 240 IGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRE 319 (467)
Q Consensus 240 vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 319 (467)
+||.... + ..+...| ...++++||+|+||.... .++++.++++++.++.++|+..+.
T Consensus 218 ~~~~~~~-------------------~-~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~ 274 (406)
T COG1819 218 IGPLLGE-------------------A-ANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG 274 (406)
T ss_pred ccccccc-------------------c-cccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc
Confidence 2222211 1 2333334 225788999999999866 899999999999999999999866
Q ss_pred CccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhc
Q 012277 320 SEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWK 399 (467)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 399 (467)
. ...+.. .|+|+.+.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||++||.|++++ |
T Consensus 275 ~-~~~~~~-------~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G 343 (406)
T COG1819 275 A-RDTLVN-------VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-G 343 (406)
T ss_pred c-cccccc-------CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-C
Confidence 2 112222 8899999999999999999999 999999999999999999999999999999999999999 9
Q ss_pred cccccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012277 400 TGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 400 ~G~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 463 (467)
+|..++ .++++.|+++|.++|.|+ +|+++++++++.+++. +| ...+.+.++++...
T Consensus 344 ~G~~l~~~~l~~~~l~~av~~vL~~~---~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 344 AGIALPFEELTEERLRAAVNEVLADD---SYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred CceecCcccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 999998 999999999999999998 9999999999999974 44 56666666665543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.3e-37 Score=316.82 Aligned_cols=392 Identities=29% Similarity=0.417 Sum_probs=248.4
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCC--------CCcceEecCCCCCCCCCCCc-c
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSS--------SSIPLEAISDGYDEGGYAQA-E 83 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~-~ 83 (467)
..+++++++++.||++|+..+|+.|+++||+||++.+............. ..+.+...++.++. ..... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhcc-chHHHHH
Confidence 34666667779999999999999999999999999998766654410000 01111111112222 11110 0
Q ss_pred CHHHHHHHHHHhCchhHHHHHHHhcC-CCCCccEEEECCchhhHHHHHHHcC-CCceeeeccchHHHHHHhhhhcCcccC
Q 012277 84 SIEAYLERFWQIGPQTLTELVEKMNG-SDSPVDCIVYDSILLWALDVAKKFG-LLGAPFLTQSCAVDYIYYHVKKGSLEL 161 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~i~~l~~-~~~~~DlVI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~~~~ 161 (467)
........+...+...+.+.+..+.. ...++|++|+|.+..+...++...+ ++...+....+....+..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~----- 158 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL----- 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc-----
Confidence 11111334444455555554433332 1133899999998766777776664 8877777666555433332221
Q ss_pred CCCCCeeeCCCCCCCCCCCCCCccccCCCchh--HHH------------HHHHHHhhhhc----CCcEEEEcc-hhhhhh
Q 012277 162 PLTGNEILLPGMPPLEPQDMPSFIHDLGSYPA--VSY------------MMMKFQFENID----KADWVLCNT-FYELEE 222 (467)
Q Consensus 162 p~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~----~~~~~l~~~-~~~l~~ 222 (467)
.++|........+.+.+..+..+... ... ........... ..+.++.++ +.+++.
T Consensus 159 ------~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~ 232 (496)
T KOG1192|consen 159 ------SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNS 232 (496)
T ss_pred ------cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEcc
Confidence 13333321111123333333322110 000 00001111100 011122222 333333
Q ss_pred hHHHHHHHH--hh-cCCeeeecccCCCccccccccCcccccccccccchhHHHHHhhcCCC--CceEEEeecccc---cC
Q 012277 223 EVAVVVEWL--RK-TWSLRTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAK--ESVVYVSYGSFV---EL 294 (467)
Q Consensus 223 ~~~~~~~~~--~~-~~~~~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~V~vs~Gs~~---~~ 294 (467)
. ....+ .+ ..++++|||+..... .. +. ....+|++..+. +++|||||||+. ..
T Consensus 233 ~---~~~~~~~~~~~~~v~~IG~l~~~~~--------~~-----~~---~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 233 N---PLLDFEPRPLLPKVIPIGPLHVKDS--------KQ-----KS---PLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred C---cccCCCCCCCCCCceEECcEEecCc--------cc-----cc---cccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 2 11111 11 235999999977611 00 11 134456665444 489999999998 78
Q ss_pred CHHHHHHHHHHHhhC-CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhh-hcccccceeeecCChhhHHHHH
Q 012277 295 KAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEV-LAHEATGCFVTHCGWNSTMEAL 372 (467)
Q Consensus 295 ~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~l-L~~~~~~~~I~HGG~~t~~eal 372 (467)
+.+....++.+++.+ ++.|+|++.......+++++.++ .++||...+|+||.++ |.|+.+++||||||+||++|++
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~--~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~ 371 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNR--GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESI 371 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCC--CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHH
Confidence 999999999999999 88899999765433345555443 3578999999999998 5999999999999999999999
Q ss_pred HhCCCeeecCCccchhhHHHHHHhHhccccccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 012277 373 SLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKE 441 (467)
Q Consensus 373 ~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 441 (467)
++|||+|++|+++||+.||+++++. |.|..+. +++.+.+.+++.+++.++ +|+++++++++.+++
T Consensus 372 ~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~~---~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 372 YSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILENE---EYKEAAKRLSEILRD 438 (496)
T ss_pred hcCCceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcCh---HHHHHHHHHHHHHHc
Confidence 9999999999999999999999999 7777776 777777999999999998 999999999999874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3.7e-26 Score=221.51 Aligned_cols=320 Identities=16% Similarity=0.142 Sum_probs=199.7
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (467)
.||++...|+.||++|.+++|++|.++||+|+|+++..-.+.-. ....|+.+..++.. .+..... ...+....
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l--~~~~g~~~~~~~~~----~l~~~~~-~~~~~~~~ 74 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTI--IEKENIPYYSISSG----KLRRYFD-LKNIKDPF 74 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccccc--CcccCCcEEEEecc----CcCCCch-HHHHHHHH
Confidence 36777777788999999999999999999999999766443211 12457888888631 1111111 12233332
Q ss_pred HhCchhH--HHHHHHhcCCCCCccEEEECCch--hhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeee
Q 012277 94 QIGPQTL--TELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (467)
Q Consensus 94 ~~~~~~l--~~~i~~l~~~~~~~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (467)
......+ ..+++..+ ||+||+.... ..+..+|..+++|+++.....
T Consensus 75 ~~~~~~~~~~~i~~~~k-----Pdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------- 124 (352)
T PRK12446 75 LVMKGVMDAYVRIRKLK-----PDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHhcC-----CCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 2222222 23344333 7999998644 347899999999998753321
Q ss_pred CCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCccc
Q 012277 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYL 249 (467)
Q Consensus 170 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~ 249 (467)
+|++ ..+++. +... . +..++++-. ..++. -++.++|+.+.+...
T Consensus 125 ~~g~--------------------~nr~~~-~~a~------~-v~~~f~~~~-------~~~~~-~k~~~tG~Pvr~~~~ 168 (352)
T PRK12446 125 TPGL--------------------ANKIAL-RFAS------K-IFVTFEEAA-------KHLPK-EKVIYTGSPVREEVL 168 (352)
T ss_pred CccH--------------------HHHHHH-HhhC------E-EEEEccchh-------hhCCC-CCeEEECCcCCcccc
Confidence 2211 223333 2222 2 223332211 11111 136788877655110
Q ss_pred cccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCH-HHHHHHHHHHhhCCCcEEEEEeCCccCcCCcc
Q 012277 250 DKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKA-EEMEELAWGLKSSDQHFLWVVRESEQAKLPKK 328 (467)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~ 328 (467)
....+...+.++..+++++|+|..||...... +.+..++..+.. +.+++|+++... +.+.
T Consensus 169 ---------------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---~~~~ 229 (352)
T PRK12446 169 ---------------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---LDDS 229 (352)
T ss_pred ---------------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---HHHH
Confidence 01112222233333568899999999975332 233333333322 478888887642 1111
Q ss_pred ccccccCCCcEEEEecc-c-hHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCc-----cchhhHHHHHHhHhccc
Q 012277 329 FSDETLTSHKSLVVSWC-P-QLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQW-----SDQSTNAKYILDVWKTG 401 (467)
Q Consensus 329 ~~~~~~~~~~v~~~~~~-p-~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~~G~G 401 (467)
.. ...++.+.+|+ + ..++++.+|+ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++. |+|
T Consensus 230 ~~----~~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~ 302 (352)
T PRK12446 230 LQ----NKEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYA 302 (352)
T ss_pred Hh----hcCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCE
Confidence 10 11345566887 4 3489999999 99999999999999999999999974 4899999999999 999
Q ss_pred cccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHH
Q 012277 402 LKFP--IVKRDAIADCISEILEGERGKELRRNAGK 434 (467)
Q Consensus 402 ~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~ 434 (467)
..+. +++++.|.+++.+++.|+ +.+++++++
T Consensus 303 ~~l~~~~~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 303 SVLYEEDVTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred EEcchhcCCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9987 899999999999999885 245544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=2.7e-26 Score=221.44 Aligned_cols=304 Identities=18% Similarity=0.197 Sum_probs=195.2
Q ss_pred cEEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 14 AHCLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 14 ~~il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
|||+|...+ |.||+.++++|+++| |||+|+|++.....+.+. .. +....++.-... .....-+........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~----~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLK----PR-FPVREIPGLGPI-QENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhc----cc-cCEEEccCceEe-ccCCccchHHHHHHH
Confidence 799965555 789999999999999 699999999997766665 23 566666421111 111111112222222
Q ss_pred H---HhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeee
Q 012277 93 W---QIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEIL 169 (467)
Q Consensus 93 ~---~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 169 (467)
. ......++++++.+.+ .+||+||+| +.+.+..+|+..|+|++.+........
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~--------------------- 128 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLRE--FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH--------------------- 128 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHh--cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc---------------------
Confidence 1 1223344455554543 237999999 555578999999999999877552110
Q ss_pred CCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhh--hcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCc
Q 012277 170 LPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFEN--IDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSF 247 (467)
Q Consensus 170 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~ 247 (467)
+.. ... ....+..+.. +.... ...++..+..+++ ... .......++||+..+.
T Consensus 129 -~~~-~~~------------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~~~---------~~~~~~~~~~p~~~~~ 183 (318)
T PF13528_consen 129 -PNF-WLP------------WDQDFGRLIE-RYIDRYHFPPADRRLALSFY-PPL---------PPFFRVPFVGPIIRPE 183 (318)
T ss_pred -ccC-Ccc------------hhhhHHHHHH-HhhhhccCCcccceecCCcc-ccc---------cccccccccCchhccc
Confidence 000 000 0011122222 22221 2444454544443 111 1111355677776541
Q ss_pred cccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCC-CcEEEEEeCCccCcCC
Q 012277 248 YLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLP 326 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~l~ 326 (467)
.. + . ...+++.|++++|..... .+++++++.+ .++++. +... .
T Consensus 184 ~~--------------------~---~--~~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-~--- 227 (318)
T PF13528_consen 184 IR--------------------E---L--PPEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-A--- 227 (318)
T ss_pred cc--------------------c---c--CCCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-c---
Confidence 10 0 0 013456799999988642 6678888887 455555 4431 1
Q ss_pred ccccccccCCCcEEEEecc--chHhhhcccccceeeecCChhhHHHHHHhCCCeeecCC--ccchhhHHHHHHhHhcccc
Q 012277 327 KKFSDETLTSHKSLVVSWC--PQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQ--WSDQSTNAKYILDVWKTGL 402 (467)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~--p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~G~ 402 (467)
+. .++|+.+.+|. ...++|+.|++ +|+|||+||++||+++|+|+|++|. ..||..||++++++ |+|.
T Consensus 228 ~~------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~ 298 (318)
T PF13528_consen 228 DP------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGI 298 (318)
T ss_pred cc------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeE
Confidence 11 56899999876 45589999999 9999999999999999999999999 67999999999999 9999
Q ss_pred ccC--CcCHHHHHHHHHHH
Q 012277 403 KFP--IVKRDAIADCISEI 419 (467)
Q Consensus 403 ~l~--~~~~~~l~~~i~~v 419 (467)
.++ +++++.|.++|+++
T Consensus 299 ~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 299 VLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EcccccCCHHHHHHHHhcC
Confidence 998 99999999998764
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=3.1e-23 Score=199.77 Aligned_cols=309 Identities=15% Similarity=0.119 Sum_probs=174.2
Q ss_pred EEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcc-eEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 15 HCLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIP-LEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 15 ~il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
||+|...+ |.||+.|.++|+++|.+ ||+|+|+++......+. ..++. +..++. .........-+....+...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~----~~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~ 74 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYIS----KYGFKVFETFPG-IKLKGEDGKVNIVKTLRNK 74 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhh----hhcCcceeccCC-ceEeecCCcCcHHHHHHhh
Confidence 57864444 66999999999999998 99999999888555554 34554 333331 1110001101122222111
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCCC
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPG 172 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P~ 172 (467)
.......+.+..+.+.+ .+||+||+| ..+.+..+|+.+|||++.+..+... .+|.
T Consensus 75 ~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~----------------------~~~~ 129 (321)
T TIGR00661 75 EYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT----------------------RYPL 129 (321)
T ss_pred ccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh----------------------cCCc
Confidence 01111233344443333 236999999 6666899999999999987653210 0111
Q ss_pred CCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcccccc
Q 012277 173 MPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLDKQ 252 (467)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~~~ 252 (467)
. .+......+... ..+. ...+...+..++....- .| +....
T Consensus 130 ~--------------~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-----------~p-----~~~~~------ 170 (321)
T TIGR00661 130 K--------------TDLIVYPTMAAL-RIFN--ERCERFIVPDYPFPYTI-----------CP-----KIIKN------ 170 (321)
T ss_pred c--------------cchhHHHHHHHH-HHhc--cccceEeeecCCCCCCC-----------Cc-----ccccc------
Confidence 1 000011111112 1111 12222222222111100 00 00000
Q ss_pred ccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCcccccc
Q 012277 253 IEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDE 332 (467)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~ 332 (467)
.+ .+. ...++.++.. ..++.|++.+|+... ..+++++++.+. +.++++..+ ...+.
T Consensus 171 ~~------~~~---~~~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~--~~~~~---- 226 (321)
T TIGR00661 171 ME------GPL---IRYDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE--VAKNS---- 226 (321)
T ss_pred CC------Ccc---cchhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC--CCccc----
Confidence 00 000 0111222222 234567777777532 345677777763 333333221 11111
Q ss_pred ccCCCcEEEEeccc--hHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCcc--chhhHHHHHHhHhccccccCCcC
Q 012277 333 TLTSHKSLVVSWCP--QLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVK 408 (467)
Q Consensus 333 ~~~~~~v~~~~~~p--~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~ 408 (467)
.++|+.+.+|.| ..++|+.|++ ||||||.+|++||+++|+|++++|... ||..||+.++++ |+|..+...+
T Consensus 227 --~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~ 301 (321)
T TIGR00661 227 --YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKE 301 (321)
T ss_pred --cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhh
Confidence 568999999997 4488899999 999999999999999999999999854 899999999999 9999997222
Q ss_pred HHHHHHHHHHHhcCc
Q 012277 409 RDAIADCISEILEGE 423 (467)
Q Consensus 409 ~~~l~~~i~~vl~~~ 423 (467)
. ++.+++.+++.|+
T Consensus 302 ~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 302 L-RLLEAILDIRNMK 315 (321)
T ss_pred H-HHHHHHHhccccc
Confidence 2 5566666677776
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=8e-22 Score=188.94 Aligned_cols=311 Identities=16% Similarity=0.188 Sum_probs=193.4
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCC-EEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGI-KVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh-~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
++|++...++.||+.|.++++++|.++|+ +|.++.+....+.... ...++.++.++..... ...........++.+
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--~~~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~ 77 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--KQYGIEFELIPSGGLR-RKGSLKLLKAPFKLL 77 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--cccCceEEEEeccccc-ccCcHHHHHHHHHHH
Confidence 36778888888999999999999999999 6888866655544431 2457888888743322 111111122222222
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEEC--CchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeC
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYD--SILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILL 170 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D--~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (467)
.. ......++++.+ ||+||+- +.+..+..+|..+|||.++.-.. .+
T Consensus 78 ~~--~~~a~~il~~~k-----Pd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn-------------------------~~ 125 (357)
T COG0707 78 KG--VLQARKILKKLK-----PDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN-------------------------AV 125 (357)
T ss_pred HH--HHHHHHHHHHcC-----CCEEEecCCccccHHHHHHHhCCCCEEEEecC-------------------------CC
Confidence 21 123345555544 7999994 33366888999999999885321 23
Q ss_pred CCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcccc
Q 012277 171 PGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLD 250 (467)
Q Consensus 171 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~ 250 (467)
|+. ..+++. +... . +..+++..... ...-....+|--.++.-
T Consensus 126 ~G~--------------------ank~~~-~~a~------~-V~~~f~~~~~~--------~~~~~~~~tG~Pvr~~~-- 167 (357)
T COG0707 126 PGL--------------------ANKILS-KFAK------K-VASAFPKLEAG--------VKPENVVVTGIPVRPEF-- 167 (357)
T ss_pred cch--------------------hHHHhH-Hhhc------e-eeecccccccc--------CCCCceEEecCcccHHh--
Confidence 333 222222 2211 1 22222211110 00002455553222200
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHH-HHHHHhhCC--CcEEEEEeCCccCcCCc
Q 012277 251 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEE-LAWGLKSSD--QHFLWVVRESEQAKLPK 327 (467)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~-~~~al~~~~--~~~i~~~~~~~~~~l~~ 327 (467)
.. .+....+.... .++++|+|+-||... ..++. +.+++..+. .+++++++.........
T Consensus 168 -------------~~-~~~~~~~~~~~-~~~~~ilV~GGS~Ga---~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~ 229 (357)
T COG0707 168 -------------EE-LPAAEVRKDGR-LDKKTILVTGGSQGA---KALNDLVPEALAKLANRIQVIHQTGKNDLEELKS 229 (357)
T ss_pred -------------hc-cchhhhhhhcc-CCCcEEEEECCcchh---HHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHH
Confidence 00 01111111111 268899999999974 22333 334444443 57777776643222222
Q ss_pred cccccccCCCc-EEEEeccchH-hhhcccccceeeecCChhhHHHHHHhCCCeeecCCc----cchhhHHHHHHhHhccc
Q 012277 328 KFSDETLTSHK-SLVVSWCPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQW----SDQSTNAKYILDVWKTG 401 (467)
Q Consensus 328 ~~~~~~~~~~~-v~~~~~~p~~-~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~----~DQ~~na~~v~~~~G~G 401 (467)
.+ ...+ +.+.+|..++ .+++.+|+ |||++|.+|+.|++++|+|++.+|.. .||..||+.+++. |.|
T Consensus 230 ~~-----~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa 301 (357)
T COG0707 230 AY-----NELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAA 301 (357)
T ss_pred HH-----hhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCE
Confidence 22 1122 7778999877 99999999 99999999999999999999998863 3899999999999 999
Q ss_pred cccC--CcCHHHHHHHHHHHhcCc
Q 012277 402 LKFP--IVKRDAIADCISEILEGE 423 (467)
Q Consensus 402 ~~l~--~~~~~~l~~~i~~vl~~~ 423 (467)
..++ +++.+.|.+.|.++++++
T Consensus 302 ~~i~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 302 LVIRQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred EEeccccCCHHHHHHHHHHHhcCH
Confidence 9998 999999999999999984
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=2e-19 Score=176.39 Aligned_cols=324 Identities=15% Similarity=0.106 Sum_probs=190.0
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc--cccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF--YKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
+|||+|++.+..||...++.|+++|.++||+|++++.+.. ....+ ..|+.++.++..-.. .......+.
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~----~~g~~~~~~~~~~~~-----~~~~~~~l~ 71 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVP----KAGIEFHFIPSGGLR-----RKGSLANLK 71 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc----cCCCcEEEEeccCcC-----CCChHHHHH
Confidence 4799999998889999999999999999999999998653 22222 347777777632111 111111111
Q ss_pred HHHHhCchhHHHHHHHhcCCCCCccEEEECCc--hhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCee
Q 012277 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI--LLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEI 168 (467)
Q Consensus 91 ~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 168 (467)
..... ...+..+.+.+++ .+||+|++... ...+..++...++|+|......
T Consensus 72 ~~~~~-~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------ 124 (357)
T PRK00726 72 APFKL-LKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------ 124 (357)
T ss_pred HHHHH-HHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC------------------------
Confidence 11111 1122223232332 23799999963 2345667888899988631100
Q ss_pred eCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcc
Q 012277 169 LLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFY 248 (467)
Q Consensus 169 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~ 248 (467)
.| ....++.. + ..+.++..+...+ .. .+..++..+|+-.....
T Consensus 125 -~~--------------------~~~~r~~~-~------~~d~ii~~~~~~~-------~~--~~~~~i~vi~n~v~~~~ 167 (357)
T PRK00726 125 -VP--------------------GLANKLLA-R------FAKKVATAFPGAF-------PE--FFKPKAVVTGNPVREEI 167 (357)
T ss_pred -Cc--------------------cHHHHHHH-H------HhchheECchhhh-------hc--cCCCCEEEECCCCChHh
Confidence 00 01112222 1 2233333222111 00 11113666765543311
Q ss_pred ccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCC--cEEEEEeCCccCcCC
Q 012277 249 LDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQ--HFLWVVRESEQAKLP 326 (467)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~l~ 326 (467)
. .+... .+-++..+++++|++..|+... ..+...+.+++.++.. .+++.++....
T Consensus 168 ~---------------~~~~~--~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---- 224 (357)
T PRK00726 168 L---------------ALAAP--PARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL---- 224 (357)
T ss_pred h---------------cccch--hhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH----
Confidence 0 00000 0111222345567765555431 1222333366655543 34555555432
Q ss_pred ccccccccCCCcEEEEeccc-hHhhhcccccceeeecCChhhHHHHHHhCCCeeecCC----ccchhhHHHHHHhHhccc
Q 012277 327 KKFSDETLTSHKSLVVSWCP-QLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNAKYILDVWKTG 401 (467)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G 401 (467)
+.+.+.....-++.+.+|+. ..++++.+|+ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.|
T Consensus 225 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g 301 (357)
T PRK00726 225 EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAA 301 (357)
T ss_pred HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCE
Confidence 22221111111388889994 4599999999 9999999999999999999999997 46899999999999 999
Q ss_pred cccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 012277 402 LKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKL 438 (467)
Q Consensus 402 ~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~ 438 (467)
..++ +++++.|.++|.++++|+ +++++..+-+.+
T Consensus 302 ~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~ 337 (357)
T PRK00726 302 LLIPQSDLTPEKLAEKLLELLSDP---ERLEAMAEAARA 337 (357)
T ss_pred EEEEcccCCHHHHHHHHHHHHcCH---HHHHHHHHHHHh
Confidence 9997 778999999999999997 666554444333
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=2.5e-18 Score=168.19 Aligned_cols=313 Identities=17% Similarity=0.163 Sum_probs=182.2
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (467)
||++...+..||....+.+++.|.++||+|++++......... ....|+.+..++..-.. .......+..+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARL--VPKAGIPLHTIPVGGLR-----RKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhc--ccccCCceEEEEecCcC-----CCChHHHHHHHHH
Confidence 5888888888999999999999999999999998764322111 11246777766631111 0111112222211
Q ss_pred h--CchhHHHHHHHhcCCCCCccEEEECCc--hhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeC
Q 012277 95 I--GPQTLTELVEKMNGSDSPVDCIVYDSI--LLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILL 170 (467)
Q Consensus 95 ~--~~~~l~~~i~~l~~~~~~~DlVI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (467)
. ....+..++++ .+||+|++... ...+..+|...|+|++...... +
T Consensus 74 ~~~~~~~~~~~i~~-----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-------------------------~ 123 (350)
T cd03785 74 LLKGVLQARKILKK-----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-------------------------V 123 (350)
T ss_pred HHHHHHHHHHHHHh-----cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-------------------------C
Confidence 1 11123333333 23699998743 2446778899999987531100 0
Q ss_pred CCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcccc
Q 012277 171 PGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLD 250 (467)
Q Consensus 171 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~ 250 (467)
| ....++.. ...+.+++.+....+. +.. .++..+|.-.....
T Consensus 124 ~--------------------~~~~~~~~-------~~~~~vi~~s~~~~~~--------~~~-~~~~~i~n~v~~~~-- 165 (350)
T cd03785 124 P--------------------GLANRLLA-------RFADRVALSFPETAKY--------FPK-DKAVVTGNPVREEI-- 165 (350)
T ss_pred c--------------------cHHHHHHH-------HhhCEEEEcchhhhhc--------CCC-CcEEEECCCCchHH--
Confidence 0 00111222 2244555544322110 011 13556665432210
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCC-HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccc
Q 012277 251 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELK-AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKF 329 (467)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~ 329 (467)
..+ ... .+.+...+++.+|++..|+..... .+++...+..+.+.+..+++.++....+.+.+..
T Consensus 166 -------------~~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~ 230 (350)
T cd03785 166 -------------LAL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAY 230 (350)
T ss_pred -------------hhh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHH
Confidence 000 011 222333244556666666653211 1222233334433334455566543222221111
Q ss_pred cccccCCCcEEEEecc-chHhhhcccccceeeecCChhhHHHHHHhCCCeeecCC----ccchhhHHHHHHhHhcccccc
Q 012277 330 SDETLTSHKSLVVSWC-PQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNAKYILDVWKTGLKF 404 (467)
Q Consensus 330 ~~~~~~~~~v~~~~~~-p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l 404 (467)
+. ..+|+++.+|+ ...++|..+|+ +|+++|.+|+.||+++|+|+|+.|. ..+|..|+..+.+. |.|..+
T Consensus 231 -~~--~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v 304 (350)
T cd03785 231 -EE--LGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLI 304 (350)
T ss_pred -hc--cCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEE
Confidence 11 23689999998 45589999999 9999999999999999999999885 46899999999999 999998
Q ss_pred C--CcCHHHHHHHHHHHhcCc
Q 012277 405 P--IVKRDAIADCISEILEGE 423 (467)
Q Consensus 405 ~--~~~~~~l~~~i~~vl~~~ 423 (467)
+ +.+.++|.++|.++++|+
T Consensus 305 ~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 305 PQEELTPERLAAALLELLSDP 325 (350)
T ss_pred ecCCCCHHHHHHHHHHHhcCH
Confidence 8 469999999999999886
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.78 E-value=4.3e-17 Score=148.84 Aligned_cols=339 Identities=15% Similarity=0.127 Sum_probs=202.5
Q ss_pred CCCCcEEEEEcCCCC--cChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCCCcceEecCCCCCC-----CCCC
Q 012277 10 SCKLAHCLVLTYPGQ--GHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDE-----GGYA 80 (467)
Q Consensus 10 ~~~~~~il~~~~~~~--GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~ 80 (467)
.++++||+|++.... ||+-++..||++|++. |.+|+++++.....-.. ...|+.++.+|.-... ...+
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~---~~~gVd~V~LPsl~k~~~G~~~~~d 82 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP---GPAGVDFVKLPSLIKGDNGEYGLVD 82 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC---CcccCceEecCceEecCCCceeeee
Confidence 456779999998854 8999999999999999 99999999988777665 4589999999832111 0111
Q ss_pred CccCHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCccc
Q 012277 81 QAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLE 160 (467)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 160 (467)
...+..+ +.+.-...+...++..+ ||++|+|.+-. + +--|. .|.+- ++......
T Consensus 83 ~~~~l~e----~~~~Rs~lil~t~~~fk-----PDi~IVd~~P~-G-lr~EL--~ptL~-------------yl~~~~t~ 136 (400)
T COG4671 83 LDGDLEE----TKKLRSQLILSTAETFK-----PDIFIVDKFPF-G-LRFEL--LPTLE-------------YLKTTGTR 136 (400)
T ss_pred cCCCHHH----HHHHHHHHHHHHHHhcC-----CCEEEEecccc-c-hhhhh--hHHHH-------------HHhhcCCc
Confidence 2222222 22222222233333333 69999996543 3 11110 11110 00000000
Q ss_pred CCCCCCeeeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHH--Hhhc-CCe
Q 012277 161 LPLTGNEILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEW--LRKT-WSL 237 (467)
Q Consensus 161 ~p~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~-~~~ 237 (467)
.+-++ ....+.+....+........+... ..+|.+++...|.|..+ ...+ .... -.+
T Consensus 137 --------~vL~l--r~i~D~p~~~~~~w~~~~~~~~I~-------r~yD~V~v~GdP~f~d~---~~~~~~~~~i~~k~ 196 (400)
T COG4671 137 --------LVLGL--RSIRDIPQELEADWRRAETVRLIN-------RFYDLVLVYGDPDFYDP---LTEFPFAPAIRAKM 196 (400)
T ss_pred --------ceeeh--HhhhhchhhhccchhhhHHHHHHH-------HhheEEEEecCccccCh---hhcCCccHhhhhhe
Confidence 00000 011122211111111111222222 22457777777766654 1111 1111 137
Q ss_pred eeecccCCCccccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhC-CC--cEE
Q 012277 238 RTIGPTIPSFYLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS-DQ--HFL 314 (467)
Q Consensus 238 ~~vgp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~--~~i 314 (467)
.|+|.+-.+ .+.... | |. ..+++..|+||.|... ...+++...++|-... +. +.+
T Consensus 197 ~ytG~vq~~------~~~~~~-------p-------~~-~~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ 254 (400)
T COG4671 197 RYTGFVQRS------LPHLPL-------P-------PH-EAPEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWL 254 (400)
T ss_pred eEeEEeecc------CcCCCC-------C-------Cc-CCCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceE
Confidence 889987221 110000 0 00 1134557999998775 3577888877775442 33 366
Q ss_pred EEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccccceeeecCChhhHHHHHHhCCCeeecCCcc---chhhH
Q 012277 315 WVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS---DQSTN 390 (467)
Q Consensus 315 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~---DQ~~n 390 (467)
+++|+.-....-..+.+..+.-+++.+..|-.+. .++..++. +|+-||+||++|-|.+|+|.+++|... ||-.-
T Consensus 255 ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliR 332 (400)
T COG4671 255 IVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIR 332 (400)
T ss_pred EEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHH
Confidence 6666532222222233331123789999987655 99999999 999999999999999999999999855 99999
Q ss_pred HHHHHhHhccccccC--CcCHHHHHHHHHHHhcC
Q 012277 391 AKYILDVWKTGLKFP--IVKRDAIADCISEILEG 422 (467)
Q Consensus 391 a~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~ 422 (467)
|+|++++ |+--++- +++++.++++|...++.
T Consensus 333 A~Rl~~L-GL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 333 AQRLEEL-GLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred HHHHHhc-CcceeeCcccCChHHHHHHHHhcccC
Confidence 9999999 9998886 99999999999999984
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=1.5e-16 Score=155.56 Aligned_cols=309 Identities=15% Similarity=0.118 Sum_probs=170.5
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccc-cccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK-SLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
|||+|+..+..||+...+.|+++|.++||+|++++.+.... ... ...|+.++.++..-.. .......+...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~---~~~g~~~~~i~~~~~~-----~~~~~~~l~~~ 72 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLV---PKAGIEFYFIPVGGLR-----RKGSFRLIKTP 72 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccc---ccCCCceEEEeccCcC-----CCChHHHHHHH
Confidence 48999999999999988899999999999999998744211 111 1356777776521110 11122222222
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCch--hhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeC
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILL 170 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (467)
... ...+..+.+.+++ .+||+|++.... ..+..+++.+++|.+.... . ..
T Consensus 73 ~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~------------------------~~ 124 (348)
T TIGR01133 73 LKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-N------------------------AV 124 (348)
T ss_pred HHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-C------------------------CC
Confidence 111 1122222222332 337999998543 3355678888999874211 0 00
Q ss_pred CCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcccc
Q 012277 171 PGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLD 250 (467)
Q Consensus 171 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~ 250 (467)
+ ....+++. ...+.+++.+. +.... + ....+|.-.....
T Consensus 125 ~--------------------~~~~~~~~-------~~~d~ii~~~~-~~~~~-------~----~~~~i~n~v~~~~-- 163 (348)
T TIGR01133 125 P--------------------GLTNKLLS-------RFAKKVLISFP-GAKDH-------F----EAVLVGNPVRQEI-- 163 (348)
T ss_pred c--------------------cHHHHHHH-------HHhCeeEECch-hHhhc-------C----CceEEcCCcCHHH--
Confidence 0 01112222 23445555433 22111 0 1334443222100
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHh---hCCCcEEEEEeCCccCcCCc
Q 012277 251 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLK---SSDQHFLWVVRESEQAKLPK 327 (467)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~l~~ 327 (467)
+.+. .. .+.+...+++++|.+..|+... ..+...+.++++ ..+.++++..++... +
T Consensus 164 -------------~~~~-~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~----~ 222 (348)
T TIGR01133 164 -------------RSLP-VP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKNDL----E 222 (348)
T ss_pred -------------hccc-ch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcchH----H
Confidence 0000 00 1122222344455444444432 111222334443 334556554444322 2
Q ss_pred cccccccCCCcEEEEecc--chHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCc---cchhhHHHHHHhHhcccc
Q 012277 328 KFSDETLTSHKSLVVSWC--PQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQW---SDQSTNAKYILDVWKTGL 402 (467)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~--p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~ 402 (467)
.+.+.....+-..++.|. +...+++.+|+ +|+++|.+|+.||+++|+|+|+.|.. .+|..|+..+++. |.|.
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~ 299 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGL 299 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEE
Confidence 222111011111222333 45689999999 99999988999999999999998763 4788899999999 9999
Q ss_pred ccC--CcCHHHHHHHHHHHhcCc
Q 012277 403 KFP--IVKRDAIADCISEILEGE 423 (467)
Q Consensus 403 ~l~--~~~~~~l~~~i~~vl~~~ 423 (467)
.++ +.+.++|.+++.++++|+
T Consensus 300 ~~~~~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 300 VIRQKELLPEKLLEALLKLLLDP 322 (348)
T ss_pred EEecccCCHHHHHHHHHHHHcCH
Confidence 887 668999999999999886
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.73 E-value=4.1e-16 Score=146.56 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=80.2
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccccc
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATG 357 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~ 357 (467)
.+.|++++|..-. ..+...++++|.+. +.++.+++|... +..+++.+......|+.+.+|+++. ++|+.+|+
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl- 244 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--PNLDELKKFAKEYPNIILFIDVENMAELMNEADL- 244 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC--cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE-
Confidence 3579999996643 22455667777664 456777776542 2223333222244689999999987 99999999
Q ss_pred eeeecCChhhHHHHHHhCCCeeecCCccchhhHHHH
Q 012277 358 CFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKY 393 (467)
Q Consensus 358 ~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~ 393 (467)
+|++|| +|++|++++|+|+|++|...+|..||+.
T Consensus 245 -~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 245 -AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred -EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 9999999999999999999999999985
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.72 E-value=3e-16 Score=154.50 Aligned_cols=349 Identities=11% Similarity=0.033 Sum_probs=190.0
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (467)
||+|...++.||+.|. +|+++|.++|++|.|++.... .+++..-..++.+..++ ...+.+.+..+..
T Consensus 7 ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~----------v~G~~~~l~~~~~ 73 (385)
T TIGR00215 7 TIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELS----------VMGLREVLGRLGR 73 (385)
T ss_pred eEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhh----------hccHHHHHHHHHH
Confidence 6888888888999999 999999999999999987642 22210001123332222 1111122222222
Q ss_pred hCchhHHHHHHHhcCCCCCccEEEECCch-hh--HHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCC
Q 012277 95 IGPQTLTELVEKMNGSDSPVDCIVYDSIL-LW--ALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLP 171 (467)
Q Consensus 95 ~~~~~l~~~i~~l~~~~~~~DlVI~D~~~-~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P 171 (467)
. ...+..+.+.+++ .+||+||.-... .. .+.+|+.+|+|++.+.+ +
T Consensus 74 ~-~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P--------------------------- 122 (385)
T TIGR00215 74 L-LKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-P--------------------------- 122 (385)
T ss_pred H-HHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-C---------------------------
Confidence 1 1122233333333 236999984332 22 33488999999987542 1
Q ss_pred CCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCccccc
Q 012277 172 GMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLDK 251 (467)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~~ 251 (467)
....+. ....+.+. +.. +.+++... ++.. .+. ....+..++|.-..+..
T Consensus 123 ~~waw~--------------~~~~r~l~-~~~------d~v~~~~~--~e~~---~~~--~~g~~~~~vGnPv~~~~--- 171 (385)
T TIGR00215 123 QVWAWR--------------KWRAKKIE-KAT------DFLLAILP--FEKA---FYQ--KKNVPCRFVGHPLLDAI--- 171 (385)
T ss_pred cHhhcC--------------cchHHHHH-HHH------hHhhccCC--CcHH---HHH--hcCCCEEEECCchhhhc---
Confidence 110000 00122222 221 22222221 1221 111 11124667885443311
Q ss_pred cccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhC-----CCcEEEEEeCCccCcCC
Q 012277 252 QIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLP 326 (467)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~l~ 326 (467)
+. ..+...+..+-++..+++++|.+..||....-.+....++++++.+ +.++++..........-
T Consensus 172 --~~--------~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~ 241 (385)
T TIGR00215 172 --PL--------YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQF 241 (385)
T ss_pred --cc--------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHH
Confidence 00 0011233333333335677888888887532133444555554433 23455444332111111
Q ss_pred ccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeec----CCcc---------chhhHHHH
Q 012277 327 KKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM----PQWS---------DQSTNAKY 393 (467)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~----P~~~---------DQ~~na~~ 393 (467)
+.+.+.......+.+..+ ....++..+|+ +|+-.|..|+ |++++|+|+|++ |+.. .|..|++.
T Consensus 242 ~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~ni 317 (385)
T TIGR00215 242 EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNI 317 (385)
T ss_pred HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHH
Confidence 111111001234443332 33479999999 9999999988 999999999998 7643 38889999
Q ss_pred HHhHhccccccC--CcCHHHHHHHHHHHhcCc----c-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 012277 394 ILDVWKTGLKFP--IVKRDAIADCISEILEGE----R-GKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 457 (467)
Q Consensus 394 v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~----~-~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 457 (467)
+.+. ++...+- +++++.|.+.+.++|.|+ + .+++++..+++.+.+. ++|.+.+..+.++
T Consensus 318 l~~~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i~ 383 (385)
T TIGR00215 318 LANR-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAVL 383 (385)
T ss_pred hcCC-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHh
Confidence 9999 9998876 999999999999999885 2 3456666666655553 3455555555444
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.72 E-value=8e-16 Score=152.22 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=99.8
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhC-CCcEEEEEeCCccCcCCcccccccc-CCCcEEEEeccchH-hhhcccc
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETL-TSHKSLVVSWCPQL-EVLAHEA 355 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~l~~~~~~~~~-~~~~v~~~~~~p~~-~lL~~~~ 355 (467)
+++++|++..|+... .+.+..+++++.+. +.+++++.+... .+.+.+.+... .++|+++.+|+++. +++..+|
T Consensus 200 ~~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~--~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD 275 (380)
T PRK13609 200 PNKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE--ALKQSLEDLQETNPDALKVFGYVENIDELFRVTS 275 (380)
T ss_pred CCCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH--HHHHHHHHHHhcCCCcEEEEechhhHHHHHHhcc
Confidence 456778887787753 22345667777654 456666665321 11122211100 34689999999875 8999999
Q ss_pred cceeeecCChhhHHHHHHhCCCeeec-CCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 356 TGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~HGG~~t~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|.... +.++|.++|.++++|+
T Consensus 276 ~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~--~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 276 C--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR--DDEEVFAKTEALLQDD 339 (380)
T ss_pred E--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC--CHHHHHHHHHHHHCCH
Confidence 9 99999988999999999999985 6677788999999999 9887654 6899999999999986
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=1.7e-14 Score=142.90 Aligned_cols=136 Identities=15% Similarity=0.294 Sum_probs=100.4
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHH-hhC-CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccc
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGL-KSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 355 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al-~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~ 355 (467)
+++++|+++.|+... .+.+..+++++ +.. +.+++++++... .+-+.+.+.....+++.+.+|+++. +++..+|
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aD 275 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--ELKRSLTAKFKSNENVLILGYTKHMNEWMASSQ 275 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--HHHHHHHHHhccCCCeEEEeccchHHHHHHhhh
Confidence 456788888888762 23455555554 322 356666665431 1112222211134588999999765 8999999
Q ss_pred cceeeecCChhhHHHHHHhCCCeeec-CCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 356 TGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~HGG~~t~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+ +|+.+|..|+.||+++|+|+|++ |..++|..|+..+++. |+|.... +.+++.++|.++++|+
T Consensus 276 l--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~--~~~~l~~~i~~ll~~~ 339 (391)
T PRK13608 276 L--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD--TPEEAIKIVASLTNGN 339 (391)
T ss_pred E--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC--CHHHHHHHHHHHhcCH
Confidence 9 99998888999999999999998 7767788999999999 9998775 7899999999999885
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.60 E-value=1.4e-13 Score=136.38 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=80.6
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhC-----CCcEEEEEeCCccCcCCcccccccc-C-CCcEEEEeccchHhhh
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETL-T-SHKSLVVSWCPQLEVL 351 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~l~~~~~~~~~-~-~~~v~~~~~~p~~~lL 351 (467)
+++++|++..||...........++++++.+ +.+++++.+... ..+.+.+... . .-++.+.+ -.-..++
T Consensus 184 ~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~---~~~~~~~~~~~~~~~~v~~~~-~~~~~~~ 259 (380)
T PRK00025 184 PDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK---RREQIEEALAEYAGLEVTLLD-GQKREAM 259 (380)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---hHHHHHHHHhhcCCCCeEEEc-ccHHHHH
Confidence 3456667777765432112234444544332 235666544221 1111211100 1 12344432 1234889
Q ss_pred cccccceeeecCChhhHHHHHHhCCCeeecCCcc--------chhhH-----HHHHHhHhccccccC--CcCHHHHHHHH
Q 012277 352 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS--------DQSTN-----AKYILDVWKTGLKFP--IVKRDAIADCI 416 (467)
Q Consensus 352 ~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~G~G~~l~--~~~~~~l~~~i 416 (467)
+.+|+ +|+.+|.+++ ||+++|+|+|+.|... .|..| ++.+.+. +++..+. +.++++|.+++
T Consensus 260 ~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~i 335 (380)
T PRK00025 260 AAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEKLARAL 335 (380)
T ss_pred HhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHHHHHHH
Confidence 99999 9999998887 9999999999885332 12112 2333333 3333333 77899999999
Q ss_pred HHHhcCcchHHHHHH
Q 012277 417 SEILEGERGKELRRN 431 (467)
Q Consensus 417 ~~vl~~~~~~~~~~~ 431 (467)
.++++|+ +.+++
T Consensus 336 ~~ll~~~---~~~~~ 347 (380)
T PRK00025 336 LPLLADG---ARRQA 347 (380)
T ss_pred HHHhcCH---HHHHH
Confidence 9999997 54443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.59 E-value=1.5e-16 Score=138.29 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=97.5
Q ss_pred eEEEeecccccCCHHHHHH---HHHHHhh--CCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccc-hHhhhccccc
Q 012277 283 VVYVSYGSFVELKAEEMEE---LAWGLKS--SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCP-QLEVLAHEAT 356 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~---~~~al~~--~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~ 356 (467)
+|+|+.||... ..+.+. +...+.. ...++++++|..........+.+ ...++.+.+|.+ ..+++..+|+
T Consensus 1 tilv~gGs~g~--~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~---~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGA--RDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVEN---FNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSH--HHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCC---TTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCH--HHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhc---cCCcEEEEechhhHHHHHHHcCE
Confidence 48999998863 112222 2222222 14678888876533332222221 236899999999 7799999999
Q ss_pred ceeeecCChhhHHHHHHhCCCeeecCCcc----chhhHHHHHHhHhccccccC--CcCHHHHHHHHHHHhcCc
Q 012277 357 GCFVTHCGWNSTMEALSLGVPMVAMPQWS----DQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGE 423 (467)
Q Consensus 357 ~~~I~HGG~~t~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~ 423 (467)
+|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+. ..+.+.|.++|.+++.++
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCCH
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcCc
Confidence 999999999999999999999999988 999999999999 9999998 777999999999999986
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.54 E-value=8.6e-13 Score=130.49 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=98.6
Q ss_pred hHHHHHhhcCCCCceEEEeecccccCCH-HHHHHHHHHHh-----hCCCcEEEEEeCCccCcCCccccccccCCCcEEEE
Q 012277 269 EACMKWLNDRAKESVVYVSYGSFVELKA-EEMEELAWGLK-----SSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVV 342 (467)
Q Consensus 269 ~~l~~~l~~~~~~~~V~vs~Gs~~~~~~-~~~~~~~~al~-----~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 342 (467)
+++.+-++..+++++|++..|+...... ..+..+...+. ..+.++++++|... .+-+.+.+. ....++++.
T Consensus 194 ~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~--~~~~~L~~~-~~~~~v~~~ 270 (382)
T PLN02605 194 DELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK--KLQSKLESR-DWKIPVKVR 270 (382)
T ss_pred HHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH--HHHHHHHhh-cccCCeEEE
Confidence 3444444443556777776666543222 22222322221 12345666665431 111222211 023578899
Q ss_pred eccchH-hhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchh-hHHHHHHhHhccccccCCcCHHHHHHHHHHHh
Q 012277 343 SWCPQL-EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQS-TNAKYILDVWKTGLKFPIVKRDAIADCISEIL 420 (467)
Q Consensus 343 ~~~p~~-~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl 420 (467)
+|+++. +++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|... -++++|.++|.+++
T Consensus 271 G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~--~~~~~la~~i~~ll 345 (382)
T PLN02605 271 GFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS--ESPKEIARIVAEWF 345 (382)
T ss_pred eccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec--CCHHHHHHHHHHHH
Confidence 999866 99999999 999999999999999999999987655554 799999999 999876 48899999999999
Q ss_pred cC
Q 012277 421 EG 422 (467)
Q Consensus 421 ~~ 422 (467)
.+
T Consensus 346 ~~ 347 (382)
T PLN02605 346 GD 347 (382)
T ss_pred cC
Confidence 87
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.45 E-value=2.2e-11 Score=120.19 Aligned_cols=328 Identities=17% Similarity=0.115 Sum_probs=177.0
Q ss_pred CCCcChHHHHHHHHHHHh--CCCEEE---EEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHH-h
Q 012277 22 PGQGHINPLLQFSRRLQH--KGIKVT---LVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ-I 95 (467)
Q Consensus 22 ~~~GH~~p~l~la~~L~~--rGh~V~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 95 (467)
.|+|-=.-.++|+++|.+ .|++|. |+++..-.+.-. ....| .+..+| ..++. .......+..... .
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~--ip~~g-~~~~~~----sgg~~-~~~~~~~~~~~~~gl 76 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLG--IPIIG-PTKELP----SGGFS-YQSLRGLLRDLRAGL 76 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCC--CceeC-CCCCCC----CCCcc-CCCHHHHHHHHHhhH
Confidence 366766678899999988 699999 999876543221 11233 444444 21211 2233344444333 2
Q ss_pred CchhH--HHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCCCC
Q 012277 96 GPQTL--TELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGM 173 (467)
Q Consensus 96 ~~~~l--~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P~~ 173 (467)
..... ..+++.+. .++|+||+---+. ...+|...|+|++++.+.-.. .++-..
T Consensus 77 ~~~~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn---------------------~~~~~~ 131 (396)
T TIGR03492 77 VGLTLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSD---------------------YYWESG 131 (396)
T ss_pred HHHHHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccc---------------------eeecCC
Confidence 22221 23334442 2369999875555 888899999999986553200 011111
Q ss_pred CCCCCCCCCCccccCCC--chhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhh-cCCeeeecccCCCcccc
Q 012277 174 PPLEPQDMPSFIHDLGS--YPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRK-TWSLRTIGPTIPSFYLD 250 (467)
Q Consensus 174 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~vgp~~~~~~~~ 250 (467)
+.. ....++.++.. +..+... +. ....++.+.+.. +.... .+.. ..++.++|-...+..
T Consensus 132 ~~~---~~~~~~~~~~G~~~~p~e~n---~l--~~~~a~~v~~~~--~~t~~------~l~~~g~k~~~vGnPv~d~l-- 193 (396)
T TIGR03492 132 PRR---SPSDEYHRLEGSLYLPWERW---LM--RSRRCLAVFVRD--RLTAR------DLRRQGVRASYLGNPMMDGL-- 193 (396)
T ss_pred CCC---ccchhhhccCCCccCHHHHH---Hh--hchhhCEEeCCC--HHHHH------HHHHCCCeEEEeCcCHHhcC--
Confidence 000 11111111111 0111111 11 113334443333 22222 2222 125888996655421
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhC----CCcEEEEEeCCc-cCcC
Q 012277 251 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS----DQHFLWVVRESE-QAKL 325 (467)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~-~~~l 325 (467)
.. . .. . +..+++++|.+-.||-...-...+..++++++.+ +..+++.+.+.. ...+
T Consensus 194 ---~~----------~-~~---~--~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~ 254 (396)
T TIGR03492 194 ---EP----------P-ER---K--PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKL 254 (396)
T ss_pred ---cc----------c-cc---c--ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHH
Confidence 00 0 00 0 1123456888988988532233344555555544 567777774321 1111
Q ss_pred Cccccc-ccc------------CCCcEEEEeccch-HhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHH
Q 012277 326 PKKFSD-ETL------------TSHKSLVVSWCPQ-LEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNA 391 (467)
Q Consensus 326 ~~~~~~-~~~------------~~~~v~~~~~~p~-~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na 391 (467)
...+.+ ... ...++.+..+..+ .++++.+|+ +|+-+|..| .|++..|+|+|++|....|. |+
T Consensus 255 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na 330 (396)
T TIGR03492 255 QAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TY 330 (396)
T ss_pred HHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HH
Confidence 110100 000 0123566565544 489999999 999999766 99999999999999777786 98
Q ss_pred HHHHhH---hccccccCCcCHHHHHHHHHHHhcCc
Q 012277 392 KYILDV---WKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 392 ~~v~~~---~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
...++. .|.+..+.+.+.+.|.+++.++++|+
T Consensus 331 ~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 331 GFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADP 365 (396)
T ss_pred HHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCH
Confidence 877762 15555555666799999999999986
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.42 E-value=2.3e-10 Score=111.87 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=89.2
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhhC-CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 355 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~ 355 (467)
++.+++..|+... -..+.+..++..+.+. +.++++...+.... .+. . ..+|+.+.+|+++. .++..+|
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~----~~~-~--~~~~v~~~g~~~~~~~~~~~~~~d 268 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARA----RLE-A--RYPNVHFLGFLDGEELAAAYASAD 268 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHH----HHh-c--cCCcEEEEeccCHHHHHHHHHhCC
Confidence 3456777787652 2344444444444332 34444444322111 111 1 56799999999876 5899999
Q ss_pred cceeeecCC----hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 356 TGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+ +|+.+. .+++.||+++|+|+|+.+.. .+...+++. +.|...+.-+.+++.++|.+++.|+
T Consensus 269 ~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~~~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 269 V--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEPGDAEAFAAALAALLADP 333 (364)
T ss_pred E--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCCCCHHHHHHHHHHHHcCH
Confidence 9 887764 37899999999999987744 466777888 8898888668888999999999986
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.38 E-value=4.9e-14 Score=118.51 Aligned_cols=124 Identities=21% Similarity=0.310 Sum_probs=82.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHh
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQI 95 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (467)
|+|.+.|+.||++|+++||++|++|||+|++++++.+.+.++ ..|+.|.+++.+ . ...........+......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~----~~Gl~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE----AAGLEFVPIPGD--S-RLPRSLEPLANLRRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH----HTT-EEEESSSC--G-GGGHHHHHHHHHHCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc----ccCceEEEecCC--c-CcCcccchhhhhhhHHHH
Confidence 789999999999999999999999999999999999999998 789999999855 1 111111111111111111
Q ss_pred --CchhHHHHHHHhc-------CCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchH
Q 012277 96 --GPQTLTELVEKMN-------GSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCA 146 (467)
Q Consensus 96 --~~~~l~~~i~~l~-------~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 146 (467)
......+.++... ......|+++.+.....+..+||++|||++.....+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1111222222211 11123588888987788999999999999998776643
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.38 E-value=7.5e-10 Score=112.51 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=87.0
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhCC-CcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccccce
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGC 358 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~~~~ 358 (467)
.+++..|+.. ..+.+..++++++..+ .+++++..+. ..+.+.+.. ...+|.+.+|+++. .++..+|+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~----~~~~l~~~~-~~~~V~f~G~v~~~ev~~~~~~aDv-- 334 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP----YREELEKMF-AGTPTVFTGMLQGDELSQAYASGDV-- 334 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh----HHHHHHHHh-ccCCeEEeccCCHHHHHHHHHHCCE--
Confidence 4566678775 3455666777777664 4555444322 122222221 23579999999865 68889999
Q ss_pred eeecCC----hhhHHHHHHhCCCeeecCCccchhhHHHHHHh---HhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 359 FVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILD---VWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 359 ~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+|.-.. ..++.||+++|+|+|+.... .....+++ . +.|..++.-+.+++.++|.++++|+
T Consensus 335 ~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 335 FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPGDVDDCVEKLETLLADP 401 (465)
T ss_pred EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCCCHHHHHHHHHHHHhCH
Confidence 885433 35789999999999987643 34556666 7 7888887557899999999999886
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.37 E-value=1.7e-09 Score=107.54 Aligned_cols=336 Identities=17% Similarity=0.153 Sum_probs=171.0
Q ss_pred EEEEEcCCC----CcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHH
Q 012277 15 HCLVLTYPG----QGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (467)
Q Consensus 15 ~il~~~~~~----~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
++++.+.++ .|.-..+..|+++|+++||+|++++...............++.+..++..... ...... .+.
T Consensus 8 ~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~ 82 (398)
T cd03800 8 HGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAE--YLPKEE---LWP 82 (398)
T ss_pred cccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEeccccccc--CCChhh---cch
Confidence 444544333 47888999999999999999999986544322210011346666666521111 011111 111
Q ss_pred HHHHhCchhHHHHHHHhcCCCCCccEEEECCch--hhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCee
Q 012277 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEI 168 (467)
Q Consensus 91 ~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 168 (467)
.+.. ....+++.+.....++|+|++.... ..+..+++.+++|+|........
T Consensus 83 ~~~~----~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~---------------------- 136 (398)
T cd03800 83 YLDE----FADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGA---------------------- 136 (398)
T ss_pred hHHH----HHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeecccc----------------------
Confidence 1111 1222333333222247999998543 34667788999998864332100
Q ss_pred eCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcC-CeeeecccCCCc
Q 012277 169 LLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTW-SLRTIGPTIPSF 247 (467)
Q Consensus 169 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~vgp~~~~~ 247 (467)
......... ..... ..... ........++.+++.+....+. ......... ++..|.+-+...
T Consensus 137 -------~~~~~~~~~---~~~~~-~~~~~--~~~~~~~~ad~ii~~s~~~~~~----~~~~~~~~~~~~~vi~ng~~~~ 199 (398)
T cd03800 137 -------VKRRHLGAA---DTYEP-ARRIE--AEERLLRAADRVIASTPQEAEE----LYSLYGAYPRRIRVVPPGVDLE 199 (398)
T ss_pred -------cCCcccccc---cccch-hhhhh--HHHHHHhhCCEEEEcCHHHHHH----HHHHccccccccEEECCCCCcc
Confidence 000000000 00000 00001 1112235667777777543221 111111111 133333222110
Q ss_pred cccccccCcccccccccccc--hhH-HHHHhhcCCCCceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCc
Q 012277 248 YLDKQIEDDKDYGFSMFKSS--TEA-CMKWLNDRAKESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESE 321 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~--~~~-l~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~ 321 (467)
. +.+. ... ..++ .. ..+..+++..|+... -..+.+-..+..+.+. +.+++++.++..
T Consensus 200 ~---------------~~~~~~~~~~~~~~-~~-~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~ 262 (398)
T cd03800 200 R---------------FTPYGRAEARRARL-LR-DPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRD 262 (398)
T ss_pred c---------------eecccchhhHHHhh-cc-CCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCC
Confidence 0 0110 011 1111 22 233457778888752 1233333333333322 345555544322
Q ss_pred cCcCCc------cccccccCCCcEEEEeccchHh---hhcccccceeeecC---C-hhhHHHHHHhCCCeeecCCccchh
Q 012277 322 QAKLPK------KFSDETLTSHKSLVVSWCPQLE---VLAHEATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQS 388 (467)
Q Consensus 322 ~~~l~~------~~~~~~~~~~~v~~~~~~p~~~---lL~~~~~~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~DQ~ 388 (467)
..... .+.+.....+++.+.+|+|+.+ ++..+|+ +++.. | ..++.||+++|+|+|+... .
T Consensus 263 -~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~ 335 (398)
T cd03800 263 -DILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----G 335 (398)
T ss_pred -cchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----C
Confidence 11111 0112211457899999999764 5889999 88542 2 3689999999999998663 3
Q ss_pred hHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 389 TNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 389 ~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
.....+++. +.|...+.-+.+++.++|.++++++
T Consensus 336 ~~~e~i~~~-~~g~~~~~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 336 GPRDIVVDG-VTGLLVDPRDPEALAAALRRLLTDP 369 (398)
T ss_pred CHHHHccCC-CCeEEeCCCCHHHHHHHHHHHHhCH
Confidence 466678888 8898887557999999999999885
No 48
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.35 E-value=4.1e-09 Score=102.35 Aligned_cols=318 Identities=15% Similarity=0.106 Sum_probs=169.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccc-ccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKS-LHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (467)
||++++....|+......++++|.++||+|++++....... .. ..++.++.++..... ......+..+.
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~ 70 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE----ALGVKVIPIPLDRRG------INPFKDLKALL 70 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc----cCCceEEeccccccc------cChHhHHHHHH
Confidence 58877777788999999999999999999999998765542 22 456777776632210 11111111111
Q ss_pred HhCchhHHHHHHHhcCCCCCccEEEECCchh--hHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCC
Q 012277 94 QIGPQTLTELVEKMNGSDSPVDCIVYDSILL--WALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLP 171 (467)
Q Consensus 94 ~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P 171 (467)
.+...++. ..+|+|++..... .+..++...+.|.++.........
T Consensus 71 -----~~~~~~~~-----~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------- 117 (359)
T cd03808 71 -----RLYRLLRK-----ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV----------------------- 117 (359)
T ss_pred -----HHHHHHHh-----cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-----------------------
Confidence 12223332 2379999885442 244445546666665433220000
Q ss_pred CCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhc-CCeeeecccCCCcccc
Q 012277 172 GMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKT-WSLRTIGPTIPSFYLD 250 (467)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~vgp~~~~~~~~ 250 (467)
.. .... ......... +. .....+.+++.+....+. ........ .....+.|...+..
T Consensus 118 ----~~----~~~~-----~~~~~~~~~-~~--~~~~~d~ii~~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-- 175 (359)
T cd03808 118 ----FT----SGGL-----KRRLYLLLE-RL--ALRFTDKVIFQNEDDRDL----ALKLGIIKKKKTVLIPGSGVDLD-- 175 (359)
T ss_pred ----hc----cchh-----HHHHHHHHH-HH--HHhhccEEEEcCHHHHHH----HHHhcCCCcCceEEecCCCCChh--
Confidence 00 0000 111222222 11 124456777766533221 11111000 01222222211100
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCc
Q 012277 251 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPK 327 (467)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~ 327 (467)
. +.+.... ..+++.+++..|+... -..+.+-+.+..+.+. +.++++...+........
T Consensus 176 -------~-----~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~ 236 (359)
T cd03808 176 -------R-----FSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAI 236 (359)
T ss_pred -------h-----cCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHH
Confidence 0 0000000 1334578888888752 2344444455555432 334444433321111110
Q ss_pred cccccccCCCcEEEEeccchH-hhhcccccceeeecCC----hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhcccc
Q 012277 328 KFSDETLTSHKSLVVSWCPQL-EVLAHEATGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGL 402 (467)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 402 (467)
..........+|.+.++..+. .++..+++ +|+... .+++.||+++|+|+|+.+.. .....+++. +.|.
T Consensus 237 ~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~ 309 (359)
T cd03808 237 LEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGF 309 (359)
T ss_pred HHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceE
Confidence 001111145688888875544 89999999 886543 57899999999999986543 445666767 7788
Q ss_pred ccCCcCHHHHHHHHHHHhcCc
Q 012277 403 KFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 403 ~l~~~~~~~l~~~i~~vl~~~ 423 (467)
..+.-+.+++.+++.+++.|+
T Consensus 310 ~~~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 310 LVPPGDAEALADAIERLIEDP 330 (359)
T ss_pred EECCCCHHHHHHHHHHHHhCH
Confidence 777557999999999999886
No 49
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.34 E-value=1.7e-09 Score=107.78 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=63.8
Q ss_pred CCcEEEEeccchH---hhhcccccceeee---cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcC
Q 012277 336 SHKSLVVSWCPQL---EVLAHEATGCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVK 408 (467)
Q Consensus 336 ~~~v~~~~~~p~~---~lL~~~~~~~~I~---HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 408 (467)
.++|.+.+++|+. .++..+|+ +|. +.|. .++.||+++|+|+|+.. .......+++. ..|..++..+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~~d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDFFD 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCCCC
Confidence 4689999999976 46778998 764 3333 48999999999999864 34566667766 6788777668
Q ss_pred HHHHHHHHHHHhcCc
Q 012277 409 RDAIADCISEILEGE 423 (467)
Q Consensus 409 ~~~l~~~i~~vl~~~ 423 (467)
++++.++|.++++|+
T Consensus 353 ~~~la~~i~~ll~~~ 367 (396)
T cd03818 353 PDALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHHHHHhCH
Confidence 999999999999986
No 50
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=2.5e-10 Score=101.92 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=112.0
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhccccccee
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGCF 359 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~~~ 359 (467)
+.-|+|++|..- +-.+.-+++..|.+.++.+-++++.. .+-..+.+++....+|+.+.-....+ .++..|++ .
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--a 231 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--A 231 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--h
Confidence 345999999763 23356667778887777766677643 33445666665567788887666544 89999999 9
Q ss_pred eecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC-CcCHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 012277 360 VTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP-IVKRDAIADCISEILEGERGKELRRNAGKWR 436 (467)
Q Consensus 360 I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~ 436 (467)
|+-|| .|+.|++..|+|.+++|+..-|--.|...+.+ |+-..+. .+.++.....+..+..|. ..|++...-.
T Consensus 232 I~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~~l~~~~~~~~~~~i~~d~---~~rk~l~~~~ 304 (318)
T COG3980 232 ISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGYHLKDLAKDYEILQIQKDY---ARRKNLSFGS 304 (318)
T ss_pred eeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccCCCchHHHHHHHHHhhhCH---HHhhhhhhcc
Confidence 99877 58999999999999999999999999999999 9888887 788888888888898886 5665554433
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.32 E-value=1e-09 Score=107.98 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=84.8
Q ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHhhC-CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhccc
Q 012277 280 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHE 354 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~ 354 (467)
+++.+++..|+... -..+.+...+..+.+. +.++++...+.....+.+..... ..+|+.+.+++++. .++..+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~--~~~~v~~~g~~~~~~~~~~~~~~ 295 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKAL--GLDNVTFLGRVPKEELPELLAAA 295 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHc--CCCcEEEeCCCChHHHHHHHHhh
Confidence 34567777888753 2344444444444443 44544433222111111100111 45789999999866 578899
Q ss_pred ccceeeecCC---------hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 355 ATGCFVTHCG---------WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 355 ~~~~~I~HGG---------~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
++ +|.... -+++.||+++|+|+|+.+.... ...+.+. +.|...+.-+.+++.++|.+++.|+
T Consensus 296 di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~----~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 296 DV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES----AELVEEA-GAGLVVPPGDPEALAAAILELLDDP 366 (394)
T ss_pred Ce--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc----hhhhccC-CcceEeCCCCHHHHHHHHHHHHhCh
Confidence 99 775433 2347999999999999876543 3445555 6677776558999999999999776
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.32 E-value=4.6e-09 Score=103.45 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=84.8
Q ss_pred CceEEEeecccccCCHHHHHHHHHHH---h-hCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccc
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGL---K-SSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 355 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al---~-~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~ 355 (467)
+..+++.+|.... .+.+..+++++ . +.+.++++...+.....+. .........+++.+.++.++. .++..++
T Consensus 196 ~~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 272 (371)
T cd04962 196 GEKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAE-RLARELGLQDDVLFLGKQDHVEELLSIAD 272 (371)
T ss_pred CCeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHH-HHHHHcCCCceEEEecCcccHHHHHHhcC
Confidence 3456777787752 23333333333 2 2345555554332211111 111111145689999988754 8899999
Q ss_pred cceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 356 TGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+ +|.- |...++.||+++|+|+|+.. ....+..+++. ..|...+.-+.+++.+++.++++++
T Consensus 273 ~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~~~~~~l~~~i~~l~~~~ 337 (371)
T cd04962 273 L--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDVGDVEAMAEYALSLLEDD 337 (371)
T ss_pred E--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCCCCHHHHHHHHHHHHhCH
Confidence 9 7743 33469999999999999854 44566777776 6787776557899999999999886
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.32 E-value=3.4e-09 Score=106.01 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=59.4
Q ss_pred CcEEEE-eccchH---hhhcccccceeee-c---CC---hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC
Q 012277 337 HKSLVV-SWCPQL---EVLAHEATGCFVT-H---CG---WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 405 (467)
Q Consensus 337 ~~v~~~-~~~p~~---~lL~~~~~~~~I~-H---GG---~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 405 (467)
+|+.+. +|+|.. ++|..+|+ +|. + -| -.++.||+++|+|+|+... ......+++. +.|..+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC
Confidence 456554 688755 66889999 773 1 12 3479999999999998653 3566778888 8898875
Q ss_pred CcCHHHHHHHHHHHhcC
Q 012277 406 IVKRDAIADCISEILEG 422 (467)
Q Consensus 406 ~~~~~~l~~~i~~vl~~ 422 (467)
+.++|+++|.++++|
T Consensus 367 --d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 --DSEELAEQLIDLLSN 381 (415)
T ss_pred --CHHHHHHHHHHHHhc
Confidence 799999999999998
No 54
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.31 E-value=2.5e-09 Score=104.20 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=86.3
Q ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccc
Q 012277 280 KESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 355 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~ 355 (467)
+.+.+++..|+... -..+.+-..+..+.+.+.++++...+..... ...... ..+++.+.+|+++. .++..++
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~--~~~~~~--~~~~v~~~g~~~~~~~~~~~~~ad 264 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEE--ESYELE--GDPRVEFLGAYPQEEIDDFYAEID 264 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhH--HHHhhc--CCCeEEEeCCCCHHHHHHHHHhCC
Confidence 34567777888753 2334433333333332455554443321111 110001 35789999999765 5689999
Q ss_pred cceeeec----CCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 356 TGCFVTH----CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~H----GG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+ +|+. .|+ .++.||+++|+|+|+.+. ..+...+++. +.|.....-+.+++.+++.++++|+
T Consensus 265 ~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 265 V--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred E--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECCCCHHHHHHHHHHHHhCh
Confidence 9 7742 344 489999999999998653 4566777777 7788887557899999999999986
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.26 E-value=1.5e-08 Score=99.09 Aligned_cols=134 Identities=18% Similarity=0.270 Sum_probs=85.6
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhh--CCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhccc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKS--SDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHE 354 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~ 354 (467)
++.+++..|+... -..+.+-.++..+.+ .+.++++...+.....+ .+..++....+++.+.+++|+. .++..+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREEL-EELARELGLADRVIFTGFVPREELPDYYKAA 279 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHH-HHHHHHcCCCCcEEEeccCChHHHHHHHHHc
Confidence 4456777787653 234444444444443 23444444432211111 1111111256799999999876 578899
Q ss_pred ccceeeecC----ChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 355 ATGCFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 355 ~~~~~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
++ +|+.. ...++.||+++|+|+|+.. ....+..+++. +.|..++.-+. ++.+++.++++++
T Consensus 280 d~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~~~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 280 DL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPPGDE-ALAEALLRLLQDP 344 (374)
T ss_pred CE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCCCCH-HHHHHHHHHHhCh
Confidence 99 87543 3478999999999999865 34566777777 78888873233 9999999999886
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.24 E-value=2.9e-08 Score=99.38 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=83.1
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhC---C-CcEEEEEeCCccCcCCcccccccc--CCCcEEEEeccchH---hhh
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSS---D-QHFLWVVRESEQAKLPKKFSDETL--TSHKSLVVSWCPQL---EVL 351 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~---~-~~~i~~~~~~~~~~l~~~~~~~~~--~~~~v~~~~~~p~~---~lL 351 (467)
++.+++..|+... .+-+..++++++.+ + .++++ +|.. ...+.+.+... ..+||.+.+|+|+. .++
T Consensus 228 ~~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~i-vG~g---~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~ 301 (412)
T PRK10307 228 GKKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVI-CGQG---GGKARLEKMAQCRGLPNVHFLPLQPYDRLPALL 301 (412)
T ss_pred CCEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEE-ECCC---hhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHH
Confidence 3456666788752 33344445554433 2 34443 3322 11222221100 22489999999875 578
Q ss_pred cccccceeeecCCh------hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcc-
Q 012277 352 AHEATGCFVTHCGW------NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGER- 424 (467)
Q Consensus 352 ~~~~~~~~I~HGG~------~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~- 424 (467)
..+|+-++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|..++.-+.++|.++|.++++|+.
T Consensus 302 ~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~d~~~la~~i~~l~~~~~~ 376 (412)
T PRK10307 302 KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPESVEALVAAIAALARQALL 376 (412)
T ss_pred HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 89998434444321 2468999999999997654311 122333 44666665578999999999998851
Q ss_pred hHHHHHHHHHHH
Q 012277 425 GKELRRNAGKWR 436 (467)
Q Consensus 425 ~~~~~~~a~~l~ 436 (467)
..++.+++++..
T Consensus 377 ~~~~~~~a~~~~ 388 (412)
T PRK10307 377 RPKLGTVAREYA 388 (412)
T ss_pred HHHHHHHHHHHH
Confidence 123455554433
No 57
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.23 E-value=1.1e-08 Score=99.48 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=67.3
Q ss_pred CCCcEEEEeccchH---hhhcccccceeee----cCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCc
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVT----HCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIV 407 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~----HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 407 (467)
.++++.+.+++++. .++..+++ +|+ -|..+++.||+++|+|+|+.+. ......+++. +.|...+..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCC
Confidence 56799999999744 67889999 874 3456799999999999998664 4567777777 888888766
Q ss_pred CHHHHHHHHHHHhcCc
Q 012277 408 KRDAIADCISEILEGE 423 (467)
Q Consensus 408 ~~~~l~~~i~~vl~~~ 423 (467)
+.+++.++|.+++.++
T Consensus 327 ~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 327 DPEALAEAILRLLDDP 342 (374)
T ss_pred CHHHHHHHHHHHHcCh
Confidence 7899999999999886
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.19 E-value=4.2e-08 Score=96.17 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=63.2
Q ss_pred CCCcEEEEeccc-hH---hhhcccccceeeecC----ChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCC
Q 012277 335 TSHKSLVVSWCP-QL---EVLAHEATGCFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPI 406 (467)
Q Consensus 335 ~~~~v~~~~~~p-~~---~lL~~~~~~~~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 406 (467)
...++.+.+|++ +. .++..+++ +|... ..+++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC
Confidence 456888899998 43 57889999 88853 35799999999999998653 2333445555 56777766
Q ss_pred cCHHHHHHHHHHHhcCc
Q 012277 407 VKRDAIADCISEILEGE 423 (467)
Q Consensus 407 ~~~~~l~~~i~~vl~~~ 423 (467)
.+.+++.+++.++++++
T Consensus 315 ~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 315 GDPEDLAEGIEWLLADP 331 (365)
T ss_pred CCHHHHHHHHHHHHhCH
Confidence 68999999999999886
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.18 E-value=3.7e-08 Score=95.14 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=85.2
Q ss_pred ceEEEeeccccc-CCHHHHHHHHHHHhhCC--CcEEEEEeCCccCcCCccccccccCCCcEEEEeccch-Hhhhcccccc
Q 012277 282 SVVYVSYGSFVE-LKAEEMEELAWGLKSSD--QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQ-LEVLAHEATG 357 (467)
Q Consensus 282 ~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~-~~lL~~~~~~ 357 (467)
..+++..|+... -..+.+...+..+.+.. .++++...+.....+ .+..+......++.+.++... ..++..+++
T Consensus 178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~- 255 (348)
T cd03820 178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREAL-EALIKELGLEDRVILLGFTKNIEEYYAKASI- 255 (348)
T ss_pred CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHH-HHHHHHcCCCCeEEEcCCcchHHHHHHhCCE-
Confidence 346677777653 23444444444444322 344443322211111 111122124567888887443 389999999
Q ss_pred eeeecCC----hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhc-cccccCCcCHHHHHHHHHHHhcCcchHHHHHHH
Q 012277 358 CFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWK-TGLKFPIVKRDAIADCISEILEGERGKELRRNA 432 (467)
Q Consensus 358 ~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a 432 (467)
+|.... .+++.||+++|+|+|+.+....+ ..+... | .|...+..+.+++.++|.++++|+ +.+++.
T Consensus 256 -~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~~~~~~~~~~i~~ll~~~---~~~~~~ 326 (348)
T cd03820 256 -FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPNGDVEALAEALLRLMEDE---ELRKRM 326 (348)
T ss_pred -EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCCCCHHHHHHHHHHHHcCH---HHHHHH
Confidence 886652 47899999999999987644432 234444 4 777777667899999999999987 544444
Q ss_pred HH
Q 012277 433 GK 434 (467)
Q Consensus 433 ~~ 434 (467)
.+
T Consensus 327 ~~ 328 (348)
T cd03820 327 GA 328 (348)
T ss_pred HH
Confidence 33
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.17 E-value=1.2e-07 Score=94.84 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCCcEEEEeccchH---hhhcccccceeee---cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCc
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIV 407 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~---HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 407 (467)
..++|.+.++++.. +++..+|+ +|. +.|+ .++.||+++|+|+|+... ......+++. +.|..++.-
T Consensus 281 l~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~ 353 (405)
T TIGR03449 281 IADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDGH 353 (405)
T ss_pred CCceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCCC
Confidence 45789999999865 67999998 774 2343 589999999999998654 3455566676 778877755
Q ss_pred CHHHHHHHHHHHhcCc
Q 012277 408 KRDAIADCISEILEGE 423 (467)
Q Consensus 408 ~~~~l~~~i~~vl~~~ 423 (467)
+.+++.++|.++++++
T Consensus 354 d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 354 DPADWADALARLLDDP 369 (405)
T ss_pred CHHHHHHHHHHHHhCH
Confidence 8899999999999886
No 61
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.15 E-value=1.8e-07 Score=94.31 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=83.9
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhh---C--CCcEEEEEeCCcc-CcCCc----------cccccccCCCcEEEEeccc
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKS---S--DQHFLWVVRESEQ-AKLPK----------KFSDETLTSHKSLVVSWCP 346 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~-~~l~~----------~~~~~~~~~~~v~~~~~~p 346 (467)
.++++.|.... .+-+..+++|++. . ..+++++.++... ..+.. +..+++...++|.+.++++
T Consensus 249 ~~i~~vGrl~~--~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~ 326 (439)
T TIGR02472 249 PPILAISRPDR--RKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHR 326 (439)
T ss_pred cEEEEEcCCcc--cCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCC
Confidence 46677787752 3444555555543 1 2344444443211 11111 0112222567888889888
Q ss_pred hHh---hhccc----ccceeeecC---Ch-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHH
Q 012277 347 QLE---VLAHE----ATGCFVTHC---GW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADC 415 (467)
Q Consensus 347 ~~~---lL~~~----~~~~~I~HG---G~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~ 415 (467)
+.+ +++.+ |+ ||... |+ .++.||+++|+|+|+... ..+...+++. ..|..++.-++++|.++
T Consensus 327 ~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~~d~~~la~~ 399 (439)
T TIGR02472 327 PDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDVLDLEAIASA 399 (439)
T ss_pred HHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCCCCHHHHHHH
Confidence 664 46655 67 87654 43 599999999999998764 3456666666 67887775689999999
Q ss_pred HHHHhcCc
Q 012277 416 ISEILEGE 423 (467)
Q Consensus 416 i~~vl~~~ 423 (467)
|.++++|+
T Consensus 400 i~~ll~~~ 407 (439)
T TIGR02472 400 LEDALSDS 407 (439)
T ss_pred HHHHHhCH
Confidence 99999986
No 62
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.14 E-value=1.4e-07 Score=100.86 Aligned_cols=365 Identities=14% Similarity=0.119 Sum_probs=190.6
Q ss_pred CCCcEEEEEcCCCC---------------cChHHHHHHHHHHHhCC--CEEEEEeCccccccc--------c--------
Q 012277 11 CKLAHCLVLTYPGQ---------------GHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSL--------H-------- 57 (467)
Q Consensus 11 ~~~~~il~~~~~~~---------------GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~--------~-------- 57 (467)
.++++|++++..|. |+..=.+.||++|+++| |+|.++|-......+ +
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 34678887765443 35555689999999998 899999975432211 0
Q ss_pred ----CCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHH----HHHHhcC-CCCCccEEEECCch--hhH
Q 012277 58 ----RDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTE----LVEKMNG-SDSPVDCIVYDSIL--LWA 126 (467)
Q Consensus 58 ----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~-~~~~~DlVI~D~~~--~~~ 126 (467)
......|+..+.+|.+-.. ..-....+..++..|...+...+.. +.+++.. ....||+|-+.+.. ..+
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~-~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRD-KYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCC-CCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 0001247777777754332 2233334455555555544433332 2222221 11237999999655 457
Q ss_pred HHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCCCCCCCCCCCCC-CccccCCCchhHHHHHHHHHhhh
Q 012277 127 LDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLPGMPPLEPQDMP-SFIHDLGSYPAVSYMMMKFQFEN 205 (467)
Q Consensus 127 ~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 205 (467)
..+++.+|||+|...++....-. .... ...... .... ..+. +..... .-...
T Consensus 326 ~~L~~~lgVP~V~T~HSLgr~K~--~~ll---------------------~~g~~~~~~~~--~~y~-~~~Ri~-~Ee~~ 378 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLGRDKL--EQLL---------------------KQGRMSKEEIN--STYK-IMRRIE-AEELS 378 (1050)
T ss_pred HHHHHhhCCCEEEECccchhhhh--hhhc---------------------ccccccccccc--cccc-hHHHHH-HHHHH
Confidence 88899999998876554311100 0000 000000 0000 0011 111111 11223
Q ss_pred hcCCcEEEEcchhhhhhhHHHHHHHHh---h--------------------cCC--eeeecccCCCccccccccCcccc-
Q 012277 206 IDKADWVLCNTFYELEEEVAVVVEWLR---K--------------------TWS--LRTIGPTIPSFYLDKQIEDDKDY- 259 (467)
Q Consensus 206 ~~~~~~~l~~~~~~l~~~~~~~~~~~~---~--------------------~~~--~~~vgp~~~~~~~~~~~~~~~~~- 259 (467)
+..++.++..|..+.+.. + ..+. + ..+ +++-|--+..+. |.+...
T Consensus 379 l~~Ad~VIasT~qE~~eq---~-~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~-----P~~~~~~ 449 (1050)
T TIGR02468 379 LDASEIVITSTRQEIEEQ---W-GLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIV-----PHDGDMD 449 (1050)
T ss_pred HHhcCEEEEeCHHHHHHH---H-HHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHcc-----CCCcccc
Confidence 466778888887766542 1 1111 0 001 222221111111 110000
Q ss_pred ---------cccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCC-----CcEEEEEeCCcc-Cc
Q 012277 260 ---------GFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSD-----QHFLWVVRESEQ-AK 324 (467)
Q Consensus 260 ---------~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~-~~ 324 (467)
....-.+...++..|+.. ++++ +++..|... +.+-+..+++|+..+. ..+.++++.... ..
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~l~r~~~~-pdkp-vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~ 525 (1050)
T TIGR02468 450 GETEGNEEHPAKPDPPIWSEIMRFFTN-PRKP-MILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDE 525 (1050)
T ss_pred chhcccccccccccchhhHHHHhhccc-CCCc-EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhh
Confidence 000001123456666654 4444 556667765 3444555666665432 234444543211 11
Q ss_pred CC----------ccccccccCCCcEEEEeccchHh---hhccc----ccceeeec---CCh-hhHHHHHHhCCCeeecCC
Q 012277 325 LP----------KKFSDETLTSHKSLVVSWCPQLE---VLAHE----ATGCFVTH---CGW-NSTMEALSLGVPMVAMPQ 383 (467)
Q Consensus 325 l~----------~~~~~~~~~~~~v~~~~~~p~~~---lL~~~----~~~~~I~H---GG~-~t~~eal~~GvP~v~~P~ 383 (467)
+. ....+++.+.++|.+.+++++.+ ++..+ ++ ||+- =|+ .++.||+++|+|+|+...
T Consensus 526 l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdv 603 (1050)
T TIGR02468 526 MSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKN 603 (1050)
T ss_pred hhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCC
Confidence 10 01112222567899999988764 56555 46 7774 344 589999999999999764
Q ss_pred ccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 384 WSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 384 ~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
. .....++.. ..|..++.-+.++|+++|.++++|+
T Consensus 604 G----G~~EII~~g-~nGlLVdP~D~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 604 G----GPVDIHRVL-DNGLLVDPHDQQAIADALLKLVADK 638 (1050)
T ss_pred C----CcHHHhccC-CcEEEECCCCHHHHHHHHHHHhhCH
Confidence 3 344555555 6688777668999999999999986
No 63
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.14 E-value=4.1e-08 Score=98.74 Aligned_cols=112 Identities=12% Similarity=0.185 Sum_probs=76.0
Q ss_pred cEEEEeccchH-hhhcccccceeeec-----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHH
Q 012277 338 KSLVVSWCPQL-EVLAHEATGCFVTH-----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDA 411 (467)
Q Consensus 338 ~v~~~~~~p~~-~lL~~~~~~~~I~H-----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 411 (467)
++.+.+..... .+++.+|+ ++.. ||..++.||+++|+|+|+-|...++......+.+. |++.... +.++
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~--d~~~ 377 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE--DAED 377 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC--CHHH
Confidence 55666654443 78899998 6553 34456999999999999999888888888888788 7766654 6899
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012277 412 IADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 460 (467)
Q Consensus 412 l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 460 (467)
|.++|.++++|+ +.+++ +++..++.++......+.+.++++++
T Consensus 378 La~~l~~ll~~~---~~~~~---m~~~a~~~~~~~~~~~~~~~~~l~~~ 420 (425)
T PRK05749 378 LAKAVTYLLTDP---DARQA---YGEAGVAFLKQNQGALQRTLQLLEPY 420 (425)
T ss_pred HHHHHHHHhcCH---HHHHH---HHHHHHHHHHhCccHHHHHHHHHHHh
Confidence 999999999986 33332 33333333223333445555555443
No 64
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.13 E-value=1.5e-07 Score=91.94 Aligned_cols=80 Identities=21% Similarity=0.151 Sum_probs=58.8
Q ss_pred CCCcEEEEeccchH---hhhcccccceeeecC---C-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCc
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIV 407 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 407 (467)
..+++.+.+|+++. .++..+++ +|.-. | ..++.||+++|+|+|+.+.. .....+. . +.|...+ .
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~-~-~~~~~~~-~ 330 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIE-Y-GCGWVVD-D 330 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhh-c-CceEEeC-C
Confidence 56789999999955 56889998 76543 2 46899999999999997643 2333333 3 5566555 2
Q ss_pred CHHHHHHHHHHHhcCc
Q 012277 408 KRDAIADCISEILEGE 423 (467)
Q Consensus 408 ~~~~l~~~i~~vl~~~ 423 (467)
+.+++.++|.++++++
T Consensus 331 ~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 331 DVDALAAALRRALELP 346 (375)
T ss_pred ChHHHHHHHHHHHhCH
Confidence 4499999999999985
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.12 E-value=1.1e-07 Score=94.52 Aligned_cols=81 Identities=12% Similarity=0.152 Sum_probs=62.5
Q ss_pred CCCcEEEEeccchH---hhhcccccceeeecC---C-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCc
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIV 407 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 407 (467)
..++|.+.+++|.. .++..+|+ ++... | ..++.||+++|+|+|+.-.. .....+.+. +.|...+.
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~- 349 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP- 349 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC-
Confidence 46799999999876 57889998 77532 2 25789999999999996543 344556666 66776654
Q ss_pred CHHHHHHHHHHHhcCc
Q 012277 408 KRDAIADCISEILEGE 423 (467)
Q Consensus 408 ~~~~l~~~i~~vl~~~ 423 (467)
+.+++.++|.++++++
T Consensus 350 ~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 350 TPEEFAEAMLKLANDP 365 (392)
T ss_pred CHHHHHHHHHHHHhCh
Confidence 7999999999999986
No 66
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.09 E-value=1.1e-07 Score=92.73 Aligned_cols=136 Identities=19% Similarity=0.170 Sum_probs=86.7
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCc-cCcCCccccccccCCCcEEEEeccchH---hhhcccc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESE-QAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 355 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~ 355 (467)
+..+++..|+... -..+.+-..+..+.+.+..+.+.+.+.. ....-.+..+.....+++.+.+++++. .++..++
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 280 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAAD 280 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcC
Confidence 4567778887653 2333333444444433223433333321 111011111111146789999999875 6788899
Q ss_pred cceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 356 TGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+ +|.. |..+++.||+++|+|+|+.+. ......+++. +.|...+.-+.+++.++|.++++++
T Consensus 281 ~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 281 V--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred e--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECCCCHHHHHHHHHHHhcCc
Confidence 8 7733 456789999999999998654 3456667777 7777777668999999999999997
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.08 E-value=2.9e-07 Score=91.76 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=78.8
Q ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcc
Q 012277 280 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAH 353 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~ 353 (467)
++..+++..|.... -+.+.+...+..+.+. +.+++++..+.....+ .+..++....++|.+.+|+|+. .+++.
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l-~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ 269 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILL-EEMREKYNLQDRVELLGAVPHERVRDVLVQ 269 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHH-HHHHHHhCCCCeEEEeCCCCHHHHHHHHHh
Confidence 34567888887753 2334444444444322 3344443322211111 1111222245779999999864 68889
Q ss_pred cccceeeec---CCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 354 EATGCFVTH---CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 354 ~~~~~~I~H---GG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+|+ +|.- -|+ .++.||+++|+|+|+.+..+ ....+. . |.+..... +.+++.+++.+++++.
T Consensus 270 ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~~~-~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 270 GHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLAEP-DVESIVRKLEEAISIL 334 (398)
T ss_pred CCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-CceeecCC-CHHHHHHHHHHHHhCh
Confidence 999 7653 244 39999999999999976542 233343 3 33322223 7899999999999864
No 68
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=9.3e-08 Score=93.43 Aligned_cols=133 Identities=18% Similarity=0.198 Sum_probs=87.3
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhCC-CcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhccccc
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEAT 356 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~~ 356 (467)
+..+++..|+... .+....++++++++. .++++...+.....+. +..++....+||.+.+|+|+. .++..+++
T Consensus 190 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~-~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~ 266 (357)
T cd03795 190 GRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPLEAELE-ALAAALGLLDRVRFLGRLDDEEKAALLAACDV 266 (357)
T ss_pred CCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChhHHHHH-HHHHhcCCcceEEEcCCCCHHHHHHHHHhCCE
Confidence 3457788888753 344555677777666 5555444332111111 111111156799999999975 68888999
Q ss_pred ceee--e---cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHh-HhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 357 GCFV--T---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILD-VWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 357 ~~~I--~---HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+| + +.|+ .++.||+++|+|+|+....... ..+.. . +.|...+.-+.+++.++|.++++|+
T Consensus 267 --~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 267 --FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPPGDPAALAEAIRRLLEDP 333 (357)
T ss_pred --EEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCCCCHHHHHHHHHHHHHCH
Confidence 66 2 2344 4799999999999997644443 33443 6 6777776558999999999999986
No 69
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.05 E-value=9.3e-08 Score=93.87 Aligned_cols=134 Identities=17% Similarity=0.201 Sum_probs=85.8
Q ss_pred ceEEEeecccccCCHHHHHHHHHHHhhCC--CcEEEEEeCCccCcCCccccccccCCCcEEEEeccch--H---hhhccc
Q 012277 282 SVVYVSYGSFVELKAEEMEELAWGLKSSD--QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQ--L---EVLAHE 354 (467)
Q Consensus 282 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~--~---~lL~~~ 354 (467)
+.+++..|.....+.+.+..+++++.... .+++++..+.....+ .+..+....+++|.+.+|+++ . +.+..+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 45677788765323445566777776553 344444333221111 122222225679999999854 2 345567
Q ss_pred ccceeeec----CChhhHHHHHHhCCCeeecC-CccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 355 ATGCFVTH----CGWNSTMEALSLGVPMVAMP-QWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 355 ~~~~~I~H----GG~~t~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
++ +|.. |-..++.||+++|+|+|+.- .. .....+++. ..|..++.-+.+++.++|.++++|+
T Consensus 259 d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~~-~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 259 SA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKPG-LNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred cE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccCC-CceEEECCCCHHHHHHHHHHHHhCc
Confidence 88 7754 22579999999999999865 32 233456666 6787777568999999999999997
No 70
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.03 E-value=2.4e-07 Score=91.03 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCCcEEEEeccchH---hhhcccccceeeecC----------ChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccc
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVTHC----------GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTG 401 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~HG----------G~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 401 (467)
..+++.+.+++|+. .++..+++ +|... -.+++.||+++|+|+|+.+.. .++..+.+. +.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-Cee
Confidence 36789999999875 56889999 77532 357999999999999987653 467777787 888
Q ss_pred cccCCcCHHHHHHHHHHHhcCc
Q 012277 402 LKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 402 ~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
..++.-+.++|.++|.++++|+
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLADP 337 (367)
T ss_pred EEECCCCHHHHHHHHHHHHcCH
Confidence 8887668899999999999986
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.02 E-value=4.4e-07 Score=88.68 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=83.8
Q ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCcccc---ccccCCCcEEEEeccchH-hhhc
Q 012277 280 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFS---DETLTSHKSLVVSWCPQL-EVLA 352 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~---~~~~~~~~v~~~~~~p~~-~lL~ 352 (467)
++..+++..|+... -..+.+-..+..+.+. +.+++++..+.....+.+.+. +.....++|.+.+|.+.. .++.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~ 262 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA 262 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH
Confidence 34457777787653 2455555556566553 334444433221111111110 111145789999986543 8899
Q ss_pred ccccceeeecC----C-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhc
Q 012277 353 HEATGCFVTHC----G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 421 (467)
Q Consensus 353 ~~~~~~~I~HG----G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~ 421 (467)
.+|+ +|+-. | .+++.||+++|+|+|+... ......+.+. +.|..++.-+.+++.++|..++.
T Consensus 263 ~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 263 LADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred hCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCCCCHHHHHHHHHHHHh
Confidence 9999 66432 3 3599999999999998653 3455666666 67888776689999999976664
No 72
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.02 E-value=2.7e-08 Score=97.86 Aligned_cols=138 Identities=13% Similarity=0.202 Sum_probs=85.7
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhC-----CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhc
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLA 352 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~ 352 (467)
+++|+++.+-.... .+.+..++++++++ +.++++..++.. ...+.+.+.....+++++.+.+++. .++.
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 273 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP--VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAA 273 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--HHHHHHHHHhCCCCCEEEECCCChHHHHHHHH
Confidence 45666655433211 24466677776554 345555543321 1111122211134689888766543 6778
Q ss_pred ccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHHH
Q 012277 353 HEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNA 432 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a 432 (467)
.+++ +|+..|.. +.||+++|+|+|.++...+++. +.+. |.+..+. -++++|.+++.++++|+ +.+++.
T Consensus 274 ~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~-~d~~~i~~ai~~ll~~~---~~~~~~ 341 (365)
T TIGR00236 274 NSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG-TDKENITKAAKRLLTDP---DEYKKM 341 (365)
T ss_pred hCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC-CCHHHHHHHHHHHHhCh---HHHHHh
Confidence 8998 99977654 7999999999999875555442 3346 6665553 57899999999999886 555544
Q ss_pred H
Q 012277 433 G 433 (467)
Q Consensus 433 ~ 433 (467)
.
T Consensus 342 ~ 342 (365)
T TIGR00236 342 S 342 (365)
T ss_pred h
Confidence 3
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.02 E-value=6.5e-08 Score=93.52 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccc
Q 012277 280 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 355 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~ 355 (467)
+++.+++..|+... -..+.+-..+..+.+. +.+++++..+.....+ ....+.....+++.+.++.+.. .++..++
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 265 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREEL-EALAKELGLADRVHFLGFQSNPYPYLKAAD 265 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHH-HHHHHhcCCCccEEEecccCCHHHHHHhCC
Confidence 44567888888752 1233333333334333 3344443322211111 1112222246789999988765 8999999
Q ss_pred cceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHH---HHHHHHHhcCc
Q 012277 356 TGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAI---ADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l---~~~i~~vl~~~ 423 (467)
+ +|+- |..+++.||+++|+|+|+.... .....+++. +.|...+.-+.+.+ .+++.+++.++
T Consensus 266 ~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 266 L--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPVGDEAALAAAALALLDLLLDP 333 (353)
T ss_pred E--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECCCCHHHHHHHHHHHHhccCCh
Confidence 9 7743 3357899999999999986433 667778888 88888875577777 55566666665
No 74
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.98 E-value=9e-07 Score=86.54 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=80.2
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhC-----CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhccc
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHE 354 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~ 354 (467)
+..+++..|+... .+-...++++++++ +.+++++..+.....+ ..........+++.+.++..+. .++..+
T Consensus 187 ~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 263 (360)
T cd04951 187 DTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATL-ERLIKALGLSNRVKLLGLRDDIAAYYNAA 263 (360)
T ss_pred CCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHH-HHHHHhcCCCCcEEEecccccHHHHHHhh
Confidence 4467788887652 23333344444322 3455555433221111 1111111145789999887654 889999
Q ss_pred ccceeeecCC----hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 355 ATGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 355 ~~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
++ +|.-.. .+++.||+++|+|+|+. |...+...+++. |.... .-+.+++.+++.+++++
T Consensus 264 d~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~~~--~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 264 DL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLIVP--ISDPEALANKIDEILKM 326 (360)
T ss_pred ce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceEeC--CCCHHHHHHHHHHHHhC
Confidence 99 776433 57899999999999974 445566666665 55443 34789999999999954
No 75
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.97 E-value=5e-07 Score=88.14 Aligned_cols=135 Identities=24% Similarity=0.226 Sum_probs=84.8
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhccc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHE 354 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~ 354 (467)
++++++..|+... -..+.+-..+..+.+. +.++++...+.....+ ..+.+....+++|.+.+++|+. .++..+
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 256 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDEL-EALIAELGLEDRVTLLGAKSQEEVRELLRAA 256 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHH-HHHHHHcCCCCeEEECCcCChHHHHHHHHhC
Confidence 4456777787652 2344444444444443 3344443322211111 1111111246789999999755 677889
Q ss_pred ccceeee----------cCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 355 ATGCFVT----------HCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 355 ~~~~~I~----------HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
++ +|. -|.-+++.||+++|+|+|+.+.. .....+++. ..|...+.-+.+++.++|.++++++
T Consensus 257 di--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~~~~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 257 DL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGLLVPPGDPEALADAIERLLDDP 328 (355)
T ss_pred CE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceEEeCCCCHHHHHHHHHHHHhCH
Confidence 98 776 23347999999999999986543 233455555 5788777558999999999999886
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.97 E-value=9.5e-07 Score=86.34 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=62.6
Q ss_pred CCCcEEEEe-ccchH---hhhcccccceeeec------CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhcccccc
Q 012277 335 TSHKSLVVS-WCPQL---EVLAHEATGCFVTH------CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKF 404 (467)
Q Consensus 335 ~~~~v~~~~-~~p~~---~lL~~~~~~~~I~H------GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 404 (467)
..++|.+.+ |+|+. .+++.+|+ +|.- |..+++.||+++|+|+|+.+... ...+... +.|...
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEE
Confidence 567888885 58864 78889999 7732 33468999999999999977543 3445666 778777
Q ss_pred CCcCHHHHHHHHHHHhcCc
Q 012277 405 PIVKRDAIADCISEILEGE 423 (467)
Q Consensus 405 ~~~~~~~l~~~i~~vl~~~ 423 (467)
+.-+.+++.+++.++++++
T Consensus 317 ~~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 317 PPGDPAALAEAIRRLLADP 335 (366)
T ss_pred cCCCHHHHHHHHHHHHcCh
Confidence 7557999999999999985
No 77
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.95 E-value=4.9e-08 Score=95.98 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=89.2
Q ss_pred CCceEEEeecccccC-CHHHHHHHHHHHhhCCCc-EEEEEeCCcc--CcCCccccccccC-CCcEEEEeccchH---hhh
Q 012277 280 KESVVYVSYGSFVEL-KAEEMEELAWGLKSSDQH-FLWVVRESEQ--AKLPKKFSDETLT-SHKSLVVSWCPQL---EVL 351 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~--~~l~~~~~~~~~~-~~~v~~~~~~p~~---~lL 351 (467)
+++.|+++.|..... ..+.+..++++++++..+ +.++...... ..+.+ ....... .+++.+.++.++. .++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~ 275 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIRE-AGLEFLGHHPNVLLISPLGYLYFLLLL 275 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHH-HHHhhccCCCCEEEECCcCHHHHHHHH
Confidence 456788888876533 466778888888776432 4444433211 12211 1111101 4688888765543 668
Q ss_pred cccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 352 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 352 ~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
..+|+ ||+..| |.+.||+++|+|+|+++.. | .+..+.+. |++..+.+ +.++|.+++.++++++
T Consensus 276 ~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~--~~~~~~~~-g~~~~~~~-~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 276 KNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--T--ERPETVES-GTNVLVGT-DPEAILAAIEKLLSDE 338 (363)
T ss_pred HcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--C--ccchhhhe-eeEEecCC-CHHHHHHHHHHHhcCc
Confidence 88999 999999 8888999999999998743 2 24456667 76665542 5899999999999985
No 78
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.94 E-value=1e-06 Score=84.00 Aligned_cols=300 Identities=17% Similarity=0.145 Sum_probs=156.9
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc--ccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY--KSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
|||.|--. ...|+.=+..+.++|.++||+|.+.+-+... +.+. ..|+.+..+...- .+....+..
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~----~yg~~y~~iG~~g--------~~~~~Kl~~ 67 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLD----LYGIDYIVIGKHG--------DSLYGKLLE 67 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH----HcCCCeEEEcCCC--------CCHHHHHHH
Confidence 57776333 2239999999999999999999999876432 2333 5788888887422 122222222
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeCC
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILLP 171 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~P 171 (467)
... ....+.+.+.+ ..||++|+- ....+..+|..+|+|+|.+.=+.-... .....+|
T Consensus 68 ~~~----R~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~----------------~~~Lt~P 124 (335)
T PF04007_consen 68 SIE----RQYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA----------------QNRLTLP 124 (335)
T ss_pred HHH----HHHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc----------------cceeehh
Confidence 221 12233333332 236999986 456688899999999999865431111 0011111
Q ss_pred CCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEE-EcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcccc
Q 012277 172 GMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVL-CNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLD 250 (467)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~ 250 (467)
....--.+.. .+ +...++.. .+ +.+. .+.+.| ..++-|.
T Consensus 125 ---la~~i~~P~~------~~---~~~~~~~G---~~-~~i~~y~G~~E-----------------~ayl~~F------- 164 (335)
T PF04007_consen 125 ---LADVIITPEA------IP---KEFLKRFG---AK-NQIRTYNGYKE-----------------LAYLHPF------- 164 (335)
T ss_pred ---cCCeeECCcc------cC---HHHHHhcC---Cc-CCEEEECCeee-----------------EEeecCC-------
Confidence 0000000000 00 00000110 00 1111 222211 1112221
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccc----cCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCC
Q 012277 251 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFV----ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLP 326 (467)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~ 326 (467)
.|+ ++..+-++. .+++.|++=+.+.. ......+..+++.|++.+.. ++.+.... .++
T Consensus 165 --------------~Pd-~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~--~~~ 225 (335)
T PF04007_consen 165 --------------KPD-PEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYE--DQR 225 (335)
T ss_pred --------------CCC-hhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCc--chh
Confidence 121 222223332 24456666555532 22345677788889988877 44443321 111
Q ss_pred ccccccccCCCcEEEE-eccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC
Q 012277 327 KKFSDETLTSHKSLVV-SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 405 (467)
Q Consensus 327 ~~~~~~~~~~~~v~~~-~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 405 (467)
+-+.+ -++.+. .-+...++|.++++ +|+-|| ....||...|+|.+.+ ..++-...-+.+.+. |. ...
T Consensus 226 ~~~~~-----~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~ 293 (335)
T PF04007_consen 226 ELFEK-----YGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYH 293 (335)
T ss_pred hHHhc-----cCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEe
Confidence 11111 123333 44555689999999 998877 8999999999999974 122322344556777 54 333
Q ss_pred CcCHHHHHHHHHHHh
Q 012277 406 IVKRDAIADCISEIL 420 (467)
Q Consensus 406 ~~~~~~l~~~i~~vl 420 (467)
.-+.+++.+.+.+.+
T Consensus 294 ~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 294 STDPDEIVEYVRKNL 308 (335)
T ss_pred cCCHHHHHHHHHHhh
Confidence 456777777555544
No 79
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.93 E-value=1.2e-07 Score=91.04 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=92.3
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhCCCc-EEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhccccccee
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSSDQH-FLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCF 359 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~ 359 (467)
+++|.+-.||....-...+..+.++.+.+..+ .++.+..... . +.+.+.......+.+.+ .-.+++..||+ +
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~--~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--a 239 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK--G-KDLKEIYGDISEFEISY--DTHKALLEAEF--A 239 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc--H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--H
Confidence 36899999998643234555455555544322 2223322211 1 22222110112333332 33489999999 9
Q ss_pred eecCChhhHHHHHHhCCCeee-cCCccchhhHHHHHH---hHhcccccc--------------C-CcCHHHHHHHHHHHh
Q 012277 360 VTHCGWNSTMEALSLGVPMVA-MPQWSDQSTNAKYIL---DVWKTGLKF--------------P-IVKRDAIADCISEIL 420 (467)
Q Consensus 360 I~HGG~~t~~eal~~GvP~v~-~P~~~DQ~~na~~v~---~~~G~G~~l--------------~-~~~~~~l~~~i~~vl 420 (467)
|+-.|-.|+ |++.+|+|+|+ +....=|+.||+++. .. |+.-.+ . +++++.|.+.+.+ +
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~ 316 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-M 316 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-H
Confidence 999999999 99999999988 344557999999999 55 655444 2 7899999998887 2
Q ss_pred cCcchHHHHHHHHHHHHHHH
Q 012277 421 EGERGKELRRNAGKWRKLAK 440 (467)
Q Consensus 421 ~~~~~~~~~~~a~~l~~~~~ 440 (467)
.. +.+++...++.+.+.
T Consensus 317 ~~---~~~~~~~~~l~~~l~ 333 (347)
T PRK14089 317 DR---EKFFKKSKELREYLK 333 (347)
T ss_pred HH---HHHHHHHHHHHHHhc
Confidence 22 256666666666663
No 80
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.92 E-value=5.6e-06 Score=87.00 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCCcEEEEecc-ch---Hhhhc----ccccceeeec---CCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhcccc
Q 012277 335 TSHKSLVVSWC-PQ---LEVLA----HEATGCFVTH---CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGL 402 (467)
Q Consensus 335 ~~~~v~~~~~~-p~---~~lL~----~~~~~~~I~H---GG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 402 (467)
+.++|.+.++. +. .+++. .+++ ||+- =|+ -|+.||+++|+|+|+.. ....+..|++- ..|.
T Consensus 617 L~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~----~GG~~EiV~dg-~tGf 689 (784)
T TIGR02470 617 LHGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATR----FGGPLEIIQDG-VSGF 689 (784)
T ss_pred CCCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEE
Confidence 56788888874 32 23443 2346 7753 333 59999999999999865 34577777777 7899
Q ss_pred ccCCcCHHHHHHHHHHHh
Q 012277 403 KFPIVKRDAIADCISEIL 420 (467)
Q Consensus 403 ~l~~~~~~~l~~~i~~vl 420 (467)
.++.-++++++++|.+++
T Consensus 690 LVdp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 690 HIDPYHGEEAAEKIVDFF 707 (784)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 888668899999999876
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.92 E-value=4.9e-07 Score=88.41 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=81.9
Q ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccc
Q 012277 280 KESVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEA 355 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~ 355 (467)
+++.+.+..|+... -..+.+-..+..+.+. +.+++++..+.....+.. ..+.....+++.+.++..+. +++..++
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~ad 268 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKK-KVKELGLEDKVIFLGVRNDVPELLQAMD 268 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHH-HHHhcCCCCcEEEecccCCHHHHHHhcC
Confidence 34567777888752 2344444444444433 334444432221111111 11111156789999885543 8999999
Q ss_pred cceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 356 TGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+ +|+- |-..++.||+++|+|+|+....+ ....+++ +.|....+-++++++++|.++++|+
T Consensus 269 i--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 269 V--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred E--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 9 7764 34579999999999999865433 2333333 3344444445799999999999997
No 82
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.91 E-value=1.4e-07 Score=91.33 Aligned_cols=128 Identities=12% Similarity=0.105 Sum_probs=83.0
Q ss_pred EEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccccceee
Q 012277 284 VYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGCFV 360 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~~~~~I 360 (467)
+.+..|... +.+....++++++..+.++++...+.....+...........+++.+.+++++. .+++.+++ ++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~--~v 248 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA--LL 248 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE--EE
Confidence 455667774 334455677788888877776654432211111111110025789999999876 56888998 66
Q ss_pred e----cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 361 T----HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 361 ~----HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
. +-|+ .++.||+++|+|+|+... ..+...+++. ..|...+. .+++.+++.+++..
T Consensus 249 ~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~~--~~~l~~~l~~l~~~ 308 (335)
T cd03802 249 FPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVDS--VEELAAAVARADRL 308 (335)
T ss_pred eCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeCC--HHHHHHHHHHHhcc
Confidence 4 2343 589999999999998764 3344455554 46777664 99999999998765
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.88 E-value=3.8e-06 Score=82.94 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCceEEEeecccccC-CHH-HHHHHHHHHhhC-----CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhh
Q 012277 280 KESVVYVSYGSFVEL-KAE-EMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVL 351 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~~-~~~-~~~~~~~al~~~-----~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL 351 (467)
+++.+.++.|..... ..+ +++.+...+++. +.+++++..+.....+ ....+......++++.++..+. .++
T Consensus 192 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~ 270 (374)
T TIGR03088 192 DESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGAC-EQMVRAAGLAHLVWLPGERDDVPALM 270 (374)
T ss_pred CCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHH-HHHHHHcCCcceEEEcCCcCCHHHHH
Confidence 345688888887632 233 333333323332 2344444332211111 1111111144667777765544 889
Q ss_pred cccccceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 352 AHEATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 352 ~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
..+|+ +|+- |-..++.||+++|+|+|+... ..+...+++. ..|..++.-+.+++.++|.++++++
T Consensus 271 ~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 271 QALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred HhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCCCCHHHHHHHHHHHHhCH
Confidence 99999 7742 335799999999999999664 3456667666 6787777567899999999999886
No 84
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.87 E-value=1.6e-06 Score=84.92 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=74.6
Q ss_pred EEEeecccccCCHHHHHHHHHHHhhCC--CcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccccce
Q 012277 284 VYVSYGSFVELKAEEMEELAWGLKSSD--QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGC 358 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~~~~ 358 (467)
.++..|+... .+.+..++++++++. .+++++..+.....+.+.+.+.....++|.+.+++++. +++..+++
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~-- 270 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL-- 270 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--
Confidence 3456788752 344555666666654 45544443322221211122111256799999999887 56777787
Q ss_pred eeecCCh-----hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 359 FVTHCGW-----NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 359 ~I~HGG~-----~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
++.+.-. +++.||+++|+|+|+..... +...++.. |..... .+.+.+++.++++++
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~~~~----~~~l~~~i~~l~~~~ 331 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIYFKV----GDDLASLLEELEADP 331 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeEecC----chHHHHHHHHHHhCH
Confidence 6665433 57999999999999865432 22222233 333222 122999999999985
No 85
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.87 E-value=4.6e-06 Score=81.10 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=79.2
Q ss_pred CCceEEEeecccccC-CHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCccccc-cccCCCcEEEEeccchH-hhhccc
Q 012277 280 KESVVYVSYGSFVEL-KAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSD-ETLTSHKSLVVSWCPQL-EVLAHE 354 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~~p~~-~lL~~~ 354 (467)
++..+++..|+.... ..+.+-..+..+.+. +.+++++..+...... ..... ......++.+.++.... .++..+
T Consensus 191 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 269 (365)
T cd03807 191 EDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANL-ELLALKELGLEDKVILLGERSDVPALLNAL 269 (365)
T ss_pred CCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHH-HHHHHHhcCCCceEEEccccccHHHHHHhC
Confidence 344677788887632 233333333333222 3444444322211111 11111 11145678777765544 899999
Q ss_pred ccceeeecCC----hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 355 ATGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 355 ~~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
++ +|..+. .+++.||+++|+|+|+.. ...+...+.+. | ..++.-+.+++.+++.++++++
T Consensus 270 di--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~~-g--~~~~~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 270 DV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGDT-G--FLVPPGDPEALAEAIEALLADP 333 (365)
T ss_pred CE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhcC-C--EEeCCCCHHHHHHHHHHHHhCh
Confidence 99 887654 379999999999999854 34455555554 4 4444347899999999999985
No 86
>PLN00142 sucrose synthase
Probab=98.86 E-value=1.5e-06 Score=91.35 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=55.2
Q ss_pred CCCcEEEEec----cchHhhhc----ccccceeeec---CChh-hHHHHHHhCCCeeecCCccchhhHHHHHHhHhcccc
Q 012277 335 TSHKSLVVSW----CPQLEVLA----HEATGCFVTH---CGWN-STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGL 402 (467)
Q Consensus 335 ~~~~v~~~~~----~p~~~lL~----~~~~~~~I~H---GG~~-t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 402 (467)
..++|.+.+. .+..++.. .+++ ||+- -|+| ++.||+++|+|+|+.. .......|++- ..|.
T Consensus 640 L~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~ 712 (815)
T PLN00142 640 LKGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGF 712 (815)
T ss_pred CCCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEE
Confidence 5577877653 33344443 3466 7754 4554 8999999999998865 34566777777 7788
Q ss_pred ccCCcCHHHHHHHHHHHh
Q 012277 403 KFPIVKRDAIADCISEIL 420 (467)
Q Consensus 403 ~l~~~~~~~l~~~i~~vl 420 (467)
.++.-+.++++++|.+++
T Consensus 713 LV~P~D~eaLA~aI~~lL 730 (815)
T PLN00142 713 HIDPYHGDEAANKIADFF 730 (815)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 887557888888887654
No 87
>PLN02949 transferase, transferring glycosyl groups
Probab=98.78 E-value=1.7e-05 Score=79.95 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=55.4
Q ss_pred CCCcEEEEeccchH---hhhcccccceeee---cCChh-hHHHHHHhCCCeeecCCcc---chhhHHHHHHhHhcccccc
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVT---HCGWN-STMEALSLGVPMVAMPQWS---DQSTNAKYILDVWKTGLKF 404 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~---HGG~~-t~~eal~~GvP~v~~P~~~---DQ~~na~~v~~~~G~G~~l 404 (467)
+.++|.+.+++|+. .+|..+++ +|+ +-|+| ++.||+++|+|+|+....+ |.-... ... ..|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g-~tG~l~ 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQ-QTGFLA 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCC-cccccC
Confidence 56889999999866 56888888 774 34454 7999999999999976533 111110 001 124333
Q ss_pred CCcCHHHHHHHHHHHhcC
Q 012277 405 PIVKRDAIADCISEILEG 422 (467)
Q Consensus 405 ~~~~~~~l~~~i~~vl~~ 422 (467)
+ +.++++++|.+++++
T Consensus 407 ~--~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 T--TVEEYADAILEVLRM 422 (463)
T ss_pred C--CHHHHHHHHHHHHhC
Confidence 2 789999999999985
No 88
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.77 E-value=1.1e-05 Score=80.32 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=85.2
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhhCC--CcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhccc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSD--QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHE 354 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~ 354 (467)
+++.+++.|.... -..+.+-..+..+.+.+ .+++++..+.....+. ...+.....++|.+.+|+|+. +++..+
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~-~~~~~~~l~~~V~~~G~~~~~el~~~l~~a 299 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLR-TLIEQYQLEDVVEMPGFKPSHEVKAMLDDA 299 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHH-HHHHHcCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 4456777788762 12333333333343333 3444433322111111 111121156789999999976 578899
Q ss_pred ccceeeec---------CCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhc-Cc
Q 012277 355 ATGCFVTH---------CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE-GE 423 (467)
Q Consensus 355 ~~~~~I~H---------GG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~-~~ 423 (467)
|+ +|.- -|+ .+++||+++|+|+|+.... .....+++. ..|..++.-+.+++.++|.++++ |+
T Consensus 300 Dv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~~~d~~~la~ai~~l~~~d~ 372 (406)
T PRK15427 300 DV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVPENDAQALAQRLAAFSQLDT 372 (406)
T ss_pred CE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeCCCCHHHHHHHHHHHHhCCH
Confidence 99 7753 344 5789999999999987543 345566666 67887776689999999999998 75
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.76 E-value=7e-06 Score=80.91 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=56.8
Q ss_pred CcEEEEe-ccchH---hhhcccccceeee-c-----CC-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC
Q 012277 337 HKSLVVS-WCPQL---EVLAHEATGCFVT-H-----CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 405 (467)
Q Consensus 337 ~~v~~~~-~~p~~---~lL~~~~~~~~I~-H-----GG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 405 (467)
+|+.+.+ |+|.. .+++.+|+ +|. + -| -+++.||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4577664 78876 45999999 773 1 12 2579999999999999653 3477778888 8898886
Q ss_pred CcCHHHHHHHHHHHh
Q 012277 406 IVKRDAIADCISEIL 420 (467)
Q Consensus 406 ~~~~~~l~~~i~~vl 420 (467)
+.+++.++|.++|
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 5889999988875
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.74 E-value=3.1e-05 Score=76.71 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=82.2
Q ss_pred ceEEEeecccccCCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcCCccccccc---c-CCCcEEEE-eccchH---hhh
Q 012277 282 SVVYVSYGSFVELKAEEMEELAWGLKSS--DQHFLWVVRESEQAKLPKKFSDET---L-TSHKSLVV-SWCPQL---EVL 351 (467)
Q Consensus 282 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l~~~~~~~~---~-~~~~v~~~-~~~p~~---~lL 351 (467)
..+++..|.... .+-+..++++++.+ +.+++++.++.....+.+.+.+.. . ..+++.+. +++++. .++
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 278 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELL 278 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHH
Confidence 346666787652 34455566666655 445555544332211112221110 0 12346554 677754 678
Q ss_pred cccccceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCH------HHHHHHHHHHhc
Q 012277 352 AHEATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKR------DAIADCISEILE 421 (467)
Q Consensus 352 ~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~------~~l~~~i~~vl~ 421 (467)
..+|+ +|+- |...++.||+++|+|+|+... ......+++. +.|..++.-+. +++.++|.++++
T Consensus 279 ~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 279 SNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred HhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 89999 8763 223577999999999998653 4566777777 77888873334 899999999998
Q ss_pred Cc
Q 012277 422 GE 423 (467)
Q Consensus 422 ~~ 423 (467)
|+
T Consensus 352 ~~ 353 (388)
T TIGR02149 352 DP 353 (388)
T ss_pred CH
Confidence 86
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.70 E-value=6.2e-06 Score=80.54 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=82.4
Q ss_pred ceEEEeecccccC-CHHHHHHHHHHHhhCC--CcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccc
Q 012277 282 SVVYVSYGSFVEL-KAEEMEELAWGLKSSD--QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 355 (467)
Q Consensus 282 ~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~ 355 (467)
..+.+..|+.... ..+.+-+.+..+.+.+ .++++...............+.....+++.+.+++|+. .++..+|
T Consensus 195 ~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 274 (365)
T cd03809 195 RPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR 274 (365)
T ss_pred CCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh
Confidence 3466677877632 3444444444444333 44444432221111100000011266899999999876 6788899
Q ss_pred cceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHH
Q 012277 356 TGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRN 431 (467)
Q Consensus 356 ~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~ 431 (467)
+ +|.- |..+++.||+++|+|+|+..... ....+.+. |..+..-+.+++.++|.++++|+ +.+++
T Consensus 275 ~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~---~~~~~~~~~~~~~~~i~~l~~~~---~~~~~ 342 (365)
T cd03809 275 A--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGDA---ALYFDPLDPEALAAAIERLLEDP---ALREE 342 (365)
T ss_pred h--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecCc---eeeeCCCCHHHHHHHHHHHhcCH---HHHHH
Confidence 8 6644 33468999999999999855422 22222333 44444447999999999999887 55544
Q ss_pred HHH
Q 012277 432 AGK 434 (467)
Q Consensus 432 a~~ 434 (467)
..+
T Consensus 343 ~~~ 345 (365)
T cd03809 343 LRE 345 (365)
T ss_pred HHH
Confidence 443
No 92
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.66 E-value=2.2e-06 Score=83.76 Aligned_cols=125 Identities=14% Similarity=0.248 Sum_probs=89.4
Q ss_pred EEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccccceee
Q 012277 284 VYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGCFV 360 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~~~~~I 360 (467)
.++..|+.. +.+.+..++++++.++.+++++..+... +.+.+. ..+||.+.+++|+. .++..+|+ +|
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~~----~~l~~~--~~~~V~~~g~~~~~~~~~~~~~ad~--~v 266 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPEL----DRLRAK--AGPNVTFLGRVSDEELRDLYARARA--FL 266 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChhH----HHHHhh--cCCCEEEecCCCHHHHHHHHHhCCE--EE
Confidence 455677765 3455666788888888776666544322 222222 67899999999985 67889998 66
Q ss_pred e--cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 361 T--HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 361 ~--HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
. .-|+ .++.||+++|+|+|+.... .....+++. +.|..++.-+.+++.++|.++++|+
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~~-~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVIDG-VTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeCC-CCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 4 3344 4678999999999997643 344556666 7788887558899999999999886
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=3.3e-05 Score=81.13 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=87.2
Q ss_pred ceEEEeecccccC-CHH-HHHHHHHHHhhCC-CcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccccc
Q 012277 282 SVVYVSYGSFVEL-KAE-EMEELAWGLKSSD-QHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATG 357 (467)
Q Consensus 282 ~~V~vs~Gs~~~~-~~~-~~~~~~~al~~~~-~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~ 357 (467)
..+++..|..... ..+ +++.+...+++.+ .+++++..+.....+ +++.+.....++|.+.+|.++. .++..+|+
T Consensus 517 ~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L-~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv- 594 (694)
T PRK15179 517 RFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESV-REFAQRLGMGERILFTGLSRRVGYWLTQFNA- 594 (694)
T ss_pred CeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHH-HHHHHHcCCCCcEEEcCCcchHHHHHHhcCE-
Confidence 4466677776521 222 3333333333333 344444332211111 1222222256889999998765 88999999
Q ss_pred eeee---cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC--CcCHHHHHHHHHHHhcCcc-hHHHHH
Q 012277 358 CFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGER-GKELRR 430 (467)
Q Consensus 358 ~~I~---HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~~-~~~~~~ 430 (467)
+|. +.|+ +++.||+++|+|+|+... ......+++. ..|..++ +.+.+++.+++.+++.+.. -+.+++
T Consensus 595 -~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~ 668 (694)
T PRK15179 595 -FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPADTVTAPDVAEALARIHDMCAADPGIAR 668 (694)
T ss_pred -EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHH
Confidence 775 5564 799999999999999764 3456667776 6788887 5666777777777664310 015666
Q ss_pred HHHHHH
Q 012277 431 NAGKWR 436 (467)
Q Consensus 431 ~a~~l~ 436 (467)
++++..
T Consensus 669 ~ar~~a 674 (694)
T PRK15179 669 KAADWA 674 (694)
T ss_pred HHHHHH
Confidence 554433
No 94
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.62 E-value=4.8e-06 Score=82.97 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=60.6
Q ss_pred CCCcEEEEeccchH-hhhcccccceeee--c--CCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcC
Q 012277 335 TSHKSLVVSWCPQL-EVLAHEATGCFVT--H--CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVK 408 (467)
Q Consensus 335 ~~~~v~~~~~~p~~-~lL~~~~~~~~I~--H--GG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 408 (467)
..++|.+.+++++. .++..+++ +|. + .|. +.+.||+++|+|+|+.+...+.. .+.. |.|..+. -+
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~-~~ 348 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA-AD 348 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC-CC
Confidence 34689999999865 88999999 763 2 454 36999999999999987543321 1234 5666665 58
Q ss_pred HHHHHHHHHHHhcCc
Q 012277 409 RDAIADCISEILEGE 423 (467)
Q Consensus 409 ~~~l~~~i~~vl~~~ 423 (467)
.+++.++|.++++|+
T Consensus 349 ~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 349 PADFAAAILALLANP 363 (397)
T ss_pred HHHHHHHHHHHHcCH
Confidence 999999999999986
No 95
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.62 E-value=3.4e-05 Score=76.14 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=78.9
Q ss_pred ceEEEeeccccc-CCHHHHHHHHHHHhhC--CCcEEEEEeCCccCcC----CccccccccCCCcEEEEecc--chH---h
Q 012277 282 SVVYVSYGSFVE-LKAEEMEELAWGLKSS--DQHFLWVVRESEQAKL----PKKFSDETLTSHKSLVVSWC--PQL---E 349 (467)
Q Consensus 282 ~~V~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~l----~~~~~~~~~~~~~v~~~~~~--p~~---~ 349 (467)
..+++..|.+.. -..+.+-+.+..+.+. +.+++++..+...... -+...+.....+++.+.++. ++. .
T Consensus 190 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 269 (372)
T cd03792 190 RPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNA 269 (372)
T ss_pred CcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHH
Confidence 346777888762 2334333333333332 3455544433211110 01111111145678888876 333 6
Q ss_pred hhcccccceeeecC---C-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 350 VLAHEATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 350 lL~~~~~~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+++.+|+ ++... | ..++.||+++|+|+|+.... .....+++. ..|...+ +.+.+..+|.+++.++
T Consensus 270 ~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~--~~~~~a~~i~~ll~~~ 338 (372)
T cd03792 270 LQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD--TVEEAAVRILYLLRDP 338 (372)
T ss_pred HHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--CcHHHHHHHHHHHcCH
Confidence 7889999 88643 2 34999999999999986533 334556666 6677665 4678888999999886
No 96
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.57 E-value=2.9e-05 Score=79.02 Aligned_cols=134 Identities=14% Similarity=0.141 Sum_probs=77.4
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccc---cccccCCCcEEE-EeccchH--hhhcc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKF---SDETLTSHKSLV-VSWCPQL--EVLAH 353 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~---~~~~~~~~~v~~-~~~~p~~--~lL~~ 353 (467)
+..+++..|.... -..+.+.+.+..+.+.+.+++++..+. ....+.+ .++ .+.++.+ .+|-... .+++.
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~--~~~~~~l~~l~~~--~~~~v~~~~g~~~~~~~~~~~~ 356 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGD--PELEEAFRALAAR--YPGKVGVQIGYDEALAHRIYAG 356 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCc--HHHHHHHHHHHHH--CCCcEEEEEeCCHHHHHHHHhh
Confidence 3457777788763 233333333333333366766654332 1111111 222 4456654 4663332 67899
Q ss_pred cccceeeec---CChh-hHHHHHHhCCCeeecCCcc--chhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhc
Q 012277 354 EATGCFVTH---CGWN-STMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 421 (467)
Q Consensus 354 ~~~~~~I~H---GG~~-t~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~ 421 (467)
+|+ +|.- -|+| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++.-+++++.++|.++++
T Consensus 357 aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 357 ADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred CCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCCCHHHHHHHHHHHHH
Confidence 999 8854 3554 8899999999999865432 322111111344 66887776689999999999886
No 97
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.50 E-value=1.5e-06 Score=70.22 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=77.7
Q ss_pred ceEEEeecccccCCHHHH-----HHHHHHHhhCCC-cEEEEEeCCccCcCCccccccccCCCcEEE--Eeccch-Hhhhc
Q 012277 282 SVVYVSYGSFVELKAEEM-----EELAWGLKSSDQ-HFLWVVRESEQAKLPKKFSDETLTSHKSLV--VSWCPQ-LEVLA 352 (467)
Q Consensus 282 ~~V~vs~Gs~~~~~~~~~-----~~~~~al~~~~~-~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~--~~~~p~-~~lL~ 352 (467)
..+|||-||... .+++ ..+.+.|.+.|. +.+++.|.... ..++..... ...+.+.+ .+|-|- .+..+
T Consensus 4 ~~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-~~~d~~~~~-~k~~gl~id~y~f~psl~e~I~ 79 (170)
T KOG3349|consen 4 MTVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-FFGDPIDLI-RKNGGLTIDGYDFSPSLTEDIR 79 (170)
T ss_pred eEEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-CCCCHHHhh-cccCCeEEEEEecCccHHHHHh
Confidence 369999999873 2232 335667777886 67778776521 122221100 01223333 367786 58888
Q ss_pred ccccceeeecCChhhHHHHHHhCCCeeecCC----ccchhhHHHHHHhHhcc
Q 012277 353 HEATGCFVTHCGWNSTMEALSLGVPMVAMPQ----WSDQSTNAKYILDVWKT 400 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~ 400 (467)
.+++ ||+|+|.||++|.|..|+|.++++. ...|-.-|..+++. |.
T Consensus 80 ~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gy 128 (170)
T KOG3349|consen 80 SADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GY 128 (170)
T ss_pred hccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-Cc
Confidence 8999 9999999999999999999999984 44788899999888 53
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.48 E-value=6.4e-05 Score=75.30 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=59.0
Q ss_pred CCCcEEEEeccchH---hhhcccccceeeecC---Ch-hhHHHHHHhCCCeeecCCccchhhHHHHHH---hHhcccccc
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVTHC---GW-NSTMEALSLGVPMVAMPQWSDQSTNAKYIL---DVWKTGLKF 404 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~HG---G~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~~G~G~~l 404 (467)
+.++|.+.+++|+. .+|..+++ +|+-. |+ -++.||+++|+|+|+.-..+. ....++ +. +.|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe
Confidence 56799999999876 67888998 77532 33 488999999999998653321 112233 34 567665
Q ss_pred CCcCHHHHHHHHHHHhcCc
Q 012277 405 PIVKRDAIADCISEILEGE 423 (467)
Q Consensus 405 ~~~~~~~l~~~i~~vl~~~ 423 (467)
. ++++++++|.++++++
T Consensus 377 ~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred C--CHHHHHHHHHHHHhCC
Confidence 4 8999999999999875
No 99
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=0.00022 Score=68.65 Aligned_cols=312 Identities=13% Similarity=0.149 Sum_probs=169.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEe-CccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVT-TRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
.+-+..-+.|-++..++|.++|.++ +..|++-+ ++...+.+++--+ ..+....+|-+.+.
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~-~~v~h~YlP~D~~~---------------- 113 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG-DSVIHQYLPLDLPI---------------- 113 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC-CCeEEEecCcCchH----------------
Confidence 4455555789999999999999999 88888887 6666666653111 12444444522221
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCchhh--HHHHHHHcCCCceeeeccchHHHHHHhhhhcCcccCCCCCCeeeC
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLW--ALDVAKKFGLLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNEILL 170 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (467)
.+.+.++.++ ||++|.-....| ...-+++.|+|.+.+..=-
T Consensus 114 ------~v~rFl~~~~-----P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL-------------------------- 156 (419)
T COG1519 114 ------AVRRFLRKWR-----PKLLIIMETELWPNLINELKRRGIPLVLVNARL-------------------------- 156 (419)
T ss_pred ------HHHHHHHhcC-----CCEEEEEeccccHHHHHHHHHcCCCEEEEeeee--------------------------
Confidence 2233444433 588887766655 4555788999999864311
Q ss_pred CCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCcccc
Q 012277 171 PGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSFYLD 250 (467)
Q Consensus 171 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~~~~ 250 (467)
.-+. .+.|..+..... ..+ ..-+.++.-+..+-+ -...+.-. ++.-.|-+-.+..
T Consensus 157 ------S~rS-------~~~y~k~~~~~~-~~~---~~i~li~aQse~D~~-----Rf~~LGa~-~v~v~GNlKfd~~-- 211 (419)
T COG1519 157 ------SDRS-------FARYAKLKFLAR-LLF---KNIDLILAQSEEDAQ-----RFRSLGAK-PVVVTGNLKFDIE-- 211 (419)
T ss_pred ------chhh-------hHHHHHHHHHHH-HHH---HhcceeeecCHHHHH-----HHHhcCCc-ceEEecceeecCC--
Confidence 0000 011111111111 222 333455554432222 11222211 2444554422211
Q ss_pred ccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCC----
Q 012277 251 KQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLP---- 326 (467)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~---- 326 (467)
+ -.-+..+...|-..-+....+.+..+|... ..+.+-...++|.+..-..++++.+.+.+..+
T Consensus 212 ---~---------~~~~~~~~~~~r~~l~~~r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~ 278 (419)
T COG1519 212 ---P---------PPQLAAELAALRRQLGGHRPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHPERFKAVEN 278 (419)
T ss_pred ---C---------ChhhHHHHHHHHHhcCCCCceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHH
Confidence 0 000122223333222221236666666432 34445555555554432222222222211110
Q ss_pred --------ccccccc--c-CCCcEEEEeccc-hHhhhccccc----ceeeecCChhhHHHHHHhCCCeeecCCccchhhH
Q 012277 327 --------KKFSDET--L-TSHKSLVVSWCP-QLEVLAHEAT----GCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTN 390 (467)
Q Consensus 327 --------~~~~~~~--~-~~~~v~~~~~~p-~~~lL~~~~~----~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~n 390 (467)
-...++. . ...+|.+.|-+- ...++.-+++ +.++.+||.| ..|++++|+|++.=|...-|.+-
T Consensus 279 l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei 357 (419)
T COG1519 279 LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDI 357 (419)
T ss_pred HHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHH
Confidence 0011110 0 334778877543 4466666665 2245588877 57999999999999999999999
Q ss_pred HHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 391 AKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 391 a~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
++++++. |+|..+++ ++.|.++++.+++|+
T Consensus 358 ~~~l~~~-ga~~~v~~--~~~l~~~v~~l~~~~ 387 (419)
T COG1519 358 AERLLQA-GAGLQVED--ADLLAKAVELLLADE 387 (419)
T ss_pred HHHHHhc-CCeEEECC--HHHHHHHHHHhcCCH
Confidence 9999999 99999984 788888888888875
No 100
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.45 E-value=1.4e-05 Score=78.29 Aligned_cols=129 Identities=13% Similarity=0.214 Sum_probs=81.5
Q ss_pred CCceEEEeecccc---cCCHHHHHHHHHHHhhCCCcEEEEEeCCccC--cCCccccccccCCCcEEEEecc---chHhhh
Q 012277 280 KESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQA--KLPKKFSDETLTSHKSLVVSWC---PQLEVL 351 (467)
Q Consensus 280 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~~---p~~~lL 351 (467)
+++.|++++=... ....+.+..+++++.+.+.++++........ .+.+.+.+.....+++.+.+-+ ....++
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll 279 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLL 279 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHH
Confidence 4568778775432 3456789999999988876666655322111 1111121110014678888654 455788
Q ss_pred cccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccc-cC-CcCHHHHHHHHHHHhc
Q 012277 352 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLK-FP-IVKRDAIADCISEILE 421 (467)
Q Consensus 352 ~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~-~~~~~~l~~~i~~vl~ 421 (467)
.+|++ +|+-++.+. .||.+.|+|+|.+-- |-+-. -.|.. +. ..++++|.+++.++++
T Consensus 280 ~~a~~--vitdSSggi-~EA~~lg~Pvv~l~~---------R~e~~-~~g~nvl~vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 280 KNADA--VIGNSSSGI-IEAPSFGVPTINIGT---------RQKGR-LRADSVIDVDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HhCCE--EEEcChhHH-HhhhhcCCCEEeecC---------Cchhh-hhcCeEEEeCCCHHHHHHHHHHHhC
Confidence 89999 998876665 999999999998751 22222 22322 22 5689999999999554
No 101
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.44 E-value=6.6e-05 Score=74.98 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=54.9
Q ss_pred EEeccchHhhhcccccceeeecC----ChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHH
Q 012277 341 VVSWCPQLEVLAHEATGCFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCI 416 (467)
Q Consensus 341 ~~~~~p~~~lL~~~~~~~~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i 416 (467)
+.++.+..+++..+|+ ||.-+ =..++.||+++|+|+|+.-... + ..+.+- +.|...+ +.+++.+++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~--~~~~~a~ai 357 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD--DGKGFVRAT 357 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC--CHHHHHHHH
Confidence 5577777789999999 98874 3478999999999999976443 2 344445 5555554 688999999
Q ss_pred HHHhcCc
Q 012277 417 SEILEGE 423 (467)
Q Consensus 417 ~~vl~~~ 423 (467)
.++|.++
T Consensus 358 ~~~l~~~ 364 (462)
T PLN02846 358 LKALAEE 364 (462)
T ss_pred HHHHccC
Confidence 9999864
No 102
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.43 E-value=0.00084 Score=66.79 Aligned_cols=177 Identities=8% Similarity=0.129 Sum_probs=109.6
Q ss_pred HHHHhhcCCCCceEEEeecccccC------C-H---HHHHHHHHHHhhCCCcEEEEEeCCc-----c-C-cCCccccccc
Q 012277 271 CMKWLNDRAKESVVYVSYGSFVEL------K-A---EEMEELAWGLKSSDQHFLWVVRESE-----Q-A-KLPKKFSDET 333 (467)
Q Consensus 271 l~~~l~~~~~~~~V~vs~Gs~~~~------~-~---~~~~~~~~al~~~~~~~i~~~~~~~-----~-~-~l~~~~~~~~ 333 (467)
+..|+....++++|-++.-..... . . +.+.++++.|.+.|+++++...... . + .....+.+..
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 345555434566888886644311 1 2 3334455555556888776653211 0 1 1112233332
Q ss_pred cCCCcEEEE--eccchH--hhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccc-cC--C
Q 012277 334 LTSHKSLVV--SWCPQL--EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLK-FP--I 406 (467)
Q Consensus 334 ~~~~~v~~~--~~~p~~--~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~--~ 406 (467)
..++++++. ++-+.+ .++.+|++ +|.. =.-++.-|+..|||.+.++. | +-....++.+ |.... .+ +
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~l-g~~~~~~~~~~ 376 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIMQQL-GLPEMAIDIRH 376 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHHHHc-CCccEEechhh
Confidence 223444443 233444 88999998 8865 55677779999999999997 2 4455556778 88876 44 8
Q ss_pred cCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 407 VKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 407 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
++.++|.+.+.++++|. ++++++.++.-++++.. ....+.++++++.+
T Consensus 377 l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~~ 424 (426)
T PRK10017 377 LLDGSLQAMVADTLGQL--PALNARLAEAVSRERQT------GMQMVQSVLERIGE 424 (426)
T ss_pred CCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 89999999999999986 46777766666666642 24566777776654
No 103
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.36 E-value=0.00025 Score=72.43 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=79.0
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCcccccccc-CCCcEEEEeccchH---hhhcccc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETL-TSHKSLVVSWCPQL---EVLAHEA 355 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~-~~~~v~~~~~~p~~---~lL~~~~ 355 (467)
+..+++..|.... -..+.+...+..+.+.+.+++++..+. ....+.+.+... .++|+.+....++. .+++.+|
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD 372 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGD--PEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGAD 372 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCC--HHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCC
Confidence 3456777788763 234444444444444455665554332 111112211100 35788765433333 5788899
Q ss_pred cceeeecC---Ch-hhHHHHHHhCCCeeecCCcc--chhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 356 TGCFVTHC---GW-NSTMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 356 ~~~~I~HG---G~-~t~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
+ ++.-. |+ .+.+||+++|+|+|+....+ |.-.+...-.+. |.|..++..+.+++.+++.++++.
T Consensus 373 v--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 373 F--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGYNADALLAALRRALAL 442 (476)
T ss_pred E--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCCCHHHHHHHHHHHHHH
Confidence 9 77541 23 47899999999999865432 222111111134 578888866899999999998853
No 104
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.32 E-value=0.00016 Score=73.83 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=79.8
Q ss_pred CceEEEeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccc---cccccCCCcEEEEeccchH---hhhcc
Q 012277 281 ESVVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKF---SDETLTSHKSLVVSWCPQL---EVLAH 353 (467)
Q Consensus 281 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~---~~~~~~~~~v~~~~~~p~~---~lL~~ 353 (467)
+..+++..|.... -..+.+.+.+..+.+.+.+++++..+. ....+.+ ..+ .+.++.+....+.. .+++.
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~--~~~~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 365 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGD--PELEEALRELAER--YPGNVRVIIGYDEALAHLIYAG 365 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCC--HHHHHHHHHHHHH--CCCcEEEEEcCCHHHHHHHHHh
Confidence 3456777788763 234444444444444456666554331 1111122 122 45677776555543 57889
Q ss_pred cccceeeecC---Chh-hHHHHHHhCCCeeecCCcc--chhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhc
Q 012277 354 EATGCFVTHC---GWN-STMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 421 (467)
Q Consensus 354 ~~~~~~I~HG---G~~-t~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~ 421 (467)
+|+ +|.-. |+| +.+||+++|+|+|+....+ |.-.+...-... +.|..++.-+++++.++|.+++.
T Consensus 366 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 366 ADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCCCCHHHHHHHHHHHHH
Confidence 999 88542 444 7899999999999865433 222111111234 56777776689999999999886
No 105
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.30 E-value=6.9e-05 Score=76.40 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=91.5
Q ss_pred ceEEEeecccccCCHHHHHHHHHHHhh----CC-CcEEEEEeCCcc-CcCCccccccccCCCcEEEEeccchHhhhcccc
Q 012277 282 SVVYVSYGSFVELKAEEMEELAWGLKS----SD-QHFLWVVRESEQ-AKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEA 355 (467)
Q Consensus 282 ~~V~vs~Gs~~~~~~~~~~~~~~al~~----~~-~~~i~~~~~~~~-~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~ 355 (467)
+.+.++.|.... .+.+..+++|+.. .+ .+++ .+|.... ..+. +..+.....++|.+.++.+...++..++
T Consensus 319 ~~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l~-i~G~G~~~~~l~-~~i~~~~l~~~V~f~G~~~~~~~~~~ad 394 (500)
T TIGR02918 319 PFSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTFD-IYGEGGEKQKLQ-KIINENQAQDYIHLKGHRNLSEVYKDYE 394 (500)
T ss_pred CeEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEE-EEECchhHHHHH-HHHHHcCCCCeEEEcCCCCHHHHHHhCC
Confidence 356777788763 3444445555432 22 2333 3343221 1111 1111111457889999998889999999
Q ss_pred cceeee---cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC-C---cC----HHHHHHHHHHHhcCc
Q 012277 356 TGCFVT---HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP-I---VK----RDAIADCISEILEGE 423 (467)
Q Consensus 356 ~~~~I~---HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-~---~~----~~~l~~~i~~vl~~~ 423 (467)
+ +|+ .-|+ .+++||+++|+|+|+.... ..+...++.. ..|..++ . -+ .++|+++|.++++++
T Consensus 395 v--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 395 L--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred E--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHHhChH
Confidence 9 876 3344 5899999999999996542 2345556666 6677665 2 22 788999999999665
Q ss_pred chHHHHHHHHHHHHHHH
Q 012277 424 RGKELRRNAGKWRKLAK 440 (467)
Q Consensus 424 ~~~~~~~~a~~l~~~~~ 440 (467)
...++.+++.+.++.+.
T Consensus 469 ~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 469 DIDAFHEYSYQIAEGFL 485 (500)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34456666666555443
No 106
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.30 E-value=0.00025 Score=72.01 Aligned_cols=164 Identities=13% Similarity=0.096 Sum_probs=88.6
Q ss_pred hHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHh--hC--CCcEEEEEeCCccCcCCcccccccc-CC-CcEEEE
Q 012277 269 EACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLK--SS--DQHFLWVVRESEQAKLPKKFSDETL-TS-HKSLVV 342 (467)
Q Consensus 269 ~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~l~~~~~~~~~-~~-~~v~~~ 342 (467)
++..+-++..+++++|-+-.||-...=...+..++++.+ .+ +.++++...... ..+.+.+... .+ -++.+.
T Consensus 401 ~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---~~~~i~~~~~~~~~~~~~ii 477 (608)
T PRK01021 401 LSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---YDHLILEVLQQEGCLHSHIV 477 (608)
T ss_pred HHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---hHHHHHHHHhhcCCCCeEEe
Confidence 334444444456789999999986432344555666655 33 345554433221 1111121110 11 122333
Q ss_pred eccchHhhhcccccceeeecCChhhHHHHHHhCCCeeec-CCccchhhHHHHHHhH--hc-------ccc-----cc--C
Q 012277 343 SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDV--WK-------TGL-----KF--P 405 (467)
Q Consensus 343 ~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~--~G-------~G~-----~l--~ 405 (467)
.--...+++..||+ .+.-.| ..+.|+..+|+|||++ -...=.+..|+++.+. .= +|. .+ .
T Consensus 478 ~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ 554 (608)
T PRK01021 478 PSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK 554 (608)
T ss_pred cCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc
Confidence 11012489999998 777766 5568999999999883 3333344566666650 00 122 22 2
Q ss_pred -CcCHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHH
Q 012277 406 -IVKRDAIADCISEILEGER-GKELRRNAGKWRKLA 439 (467)
Q Consensus 406 -~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~ 439 (467)
+++++.|.+++ ++|.|++ .+++++..+++.+.+
T Consensus 555 ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 555 KDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred ccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 67899999997 8887761 123444444444443
No 107
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=0.00016 Score=68.73 Aligned_cols=354 Identities=14% Similarity=0.118 Sum_probs=180.9
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
++||.++..-..|++.-. .|.++|.+|=-+|.|++-..-. .+ ..|+ .++- +. .--....+.+.+..+
T Consensus 1 ~~ki~i~AGE~SGDllGa-~LikaLk~~~~~~efvGvgG~~--m~----aeG~--~sl~---~~-~elsvmGf~EVL~~l 67 (381)
T COG0763 1 MLKIALSAGEASGDLLGA-GLIKALKARYPDVEFVGVGGEK--ME----AEGL--ESLF---DM-EELSVMGFVEVLGRL 67 (381)
T ss_pred CceEEEEecccchhhHHH-HHHHHHHhhCCCeEEEEeccHH--HH----hccC--cccc---CH-HHHHHhhHHHHHHHH
Confidence 358888888888888754 5778887773378877764422 22 1231 1111 11 001123334444444
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHH---HHcC--CCceeeeccchHHHHHHhhhhcCcccCCCCCCe
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVA---KKFG--LLGAPFLTQSCAVDYIYYHVKKGSLELPLTGNE 167 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A---~~~g--iP~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (467)
.... ...+++++.+.. .+||++|.=....+...+| ++.| +|.|-+.+.+
T Consensus 68 p~ll-k~~~~~~~~i~~--~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~Ps----------------------- 121 (381)
T COG0763 68 PRLL-KIRRELVRYILA--NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPS----------------------- 121 (381)
T ss_pred HHHH-HHHHHHHHHHHh--cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcc-----------------------
Confidence 3322 234455555444 3468887643444444454 5556 8877754311
Q ss_pred eeCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHhhhhcCCcEEEEcchhhhhhhHHHHHHHHhhcCCeeeecccCCCc
Q 012277 168 ILLPGMPPLEPQDMPSFIHDLGSYPAVSYMMMKFQFENIDKADWVLCNTFYELEEEVAVVVEWLRKTWSLRTIGPTIPSF 247 (467)
Q Consensus 168 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~vgp~~~~~ 247 (467)
. +- |+.. ...... ...|.++.--. ||+. +.+..+ .+..|||--..+.
T Consensus 122 -----V--WA----------Wr~~--Ra~~i~-------~~~D~lLailP--FE~~---~y~k~g--~~~~yVGHpl~d~ 168 (381)
T COG0763 122 -----V--WA----------WRPK--RAVKIA-------KYVDHLLAILP--FEPA---FYDKFG--LPCTYVGHPLADE 168 (381)
T ss_pred -----e--ee----------echh--hHHHHH-------HHhhHeeeecC--CCHH---HHHhcC--CCeEEeCChhhhh
Confidence 1 00 0000 011111 22333333222 3333 233222 1478998655441
Q ss_pred cccccccCcccccccccccchhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhC-----CCcEEEEEeCCcc
Q 012277 248 YLDKQIEDDKDYGFSMFKSSTEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQ 322 (467)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~ 322 (467)
. | ..++++...+-+....+++++.+-.||-.+.=..++..+.++..++ +.++++-+.....
T Consensus 169 i-----~---------~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~ 234 (381)
T COG0763 169 I-----P---------LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY 234 (381)
T ss_pred c-----c---------ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH
Confidence 1 1 2234566666665556788999999998642223333344443332 4677776655432
Q ss_pred CcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeec-CCccchhhHHHHHHhHhccc
Q 012277 323 AKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKTG 401 (467)
Q Consensus 323 ~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G 401 (467)
..+..+..+.....-+..+.+. --.+.+..||+ .+.-+| .-+.|+..+|+|||+. =...=-+..|+++...+=++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yis 310 (381)
T COG0763 235 RRIIEEALKWEVAGLSLILIDG-EKRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVS 310 (381)
T ss_pred HHHHHHHhhccccCceEEecCc-hHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCccc
Confidence 2232222211000011222221 11267778887 666655 4568999999999883 22222344556655551111
Q ss_pred -------ccc-----C-CcCHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012277 402 -------LKF-----P-IVKRDAIADCISEILEGE-RGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 460 (467)
Q Consensus 402 -------~~l-----~-~~~~~~l~~~i~~vl~~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 460 (467)
..+ . +++++.|.+++.+++.|+ +...+++...++.+.++ .+++++...+.+++.+
T Consensus 311 LpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 311 LPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred chHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 111 1 789999999999999986 22456666666666665 2334444444444443
No 108
>PLN02316 synthase/transferase
Probab=98.28 E-value=0.0015 Score=71.05 Aligned_cols=136 Identities=7% Similarity=0.057 Sum_probs=76.9
Q ss_pred eEEEeecccccC-CHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCcc---ccccc--cCCCcEEEEeccchH---hhhcc
Q 012277 283 VVYVSYGSFVEL-KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKK---FSDET--LTSHKSLVVSWCPQL---EVLAH 353 (467)
Q Consensus 283 ~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~---~~~~~--~~~~~v~~~~~~p~~---~lL~~ 353 (467)
.+++..|..... ..+++...+..+.+.+.+++++..+.. ..+... +.+++ ..++++.+....+.. .+++.
T Consensus 841 plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd-~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa 919 (1036)
T PLN02316 841 PLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPD-PRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG 919 (1036)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCC-HHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh
Confidence 456667776632 334443333333334667665443321 111111 11111 035678777555543 68999
Q ss_pred cccceeeecC---C-hhhHHHHHHhCCCeeecCCcc--chhhH-------HHHHHhHhccccccCCcCHHHHHHHHHHHh
Q 012277 354 EATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWS--DQSTN-------AKYILDVWKTGLKFPIVKRDAIADCISEIL 420 (467)
Q Consensus 354 ~~~~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~~G~G~~l~~~~~~~l~~~i~~vl 420 (467)
+|+ |+.-. | ..+.+||+++|+|.|+....+ |.-.. ++..... +.|...+..+++.|..+|.+++
T Consensus 920 ADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tGflf~~~d~~aLa~AL~raL 996 (1036)
T PLN02316 920 ADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNGFSFDGADAAGVDYALNRAI 996 (1036)
T ss_pred CcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-CceEEeCCCCHHHHHHHHHHHH
Confidence 999 88643 3 358999999999998864432 22111 1111113 4577777778999999999999
Q ss_pred cC
Q 012277 421 EG 422 (467)
Q Consensus 421 ~~ 422 (467)
.+
T Consensus 997 ~~ 998 (1036)
T PLN02316 997 SA 998 (1036)
T ss_pred hh
Confidence 75
No 109
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.24 E-value=0.00024 Score=69.01 Aligned_cols=162 Identities=21% Similarity=0.194 Sum_probs=96.3
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhh---C--CCcEEEEEeCCccCcCCccccccccCCCcEEEEe-ccchHhhhc
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKS---S--DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS-WCPQLEVLA 352 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~-~~p~~~lL~ 352 (467)
+++++|.+-.||-..-=...+..++++.+. . +.++++.........+-...... ...++.+.- .-.-.++|.
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~m~ 259 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAE--YPPDVSIVIIEGESYDAMA 259 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHh--hCCCCeEEEcCCchHHHHH
Confidence 578899999999763222333444554432 2 34556555432211111111111 223333332 223447888
Q ss_pred ccccceeeecCChhhHHHHHHhCCCeeec-CCccchhhHHHHHHhHhcc-c-------cc-----cC-CcCHHHHHHHHH
Q 012277 353 HEATGCFVTHCGWNSTMEALSLGVPMVAM-PQWSDQSTNAKYILDVWKT-G-------LK-----FP-IVKRDAIADCIS 417 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~-G-------~~-----l~-~~~~~~l~~~i~ 417 (467)
.+|+ .+.-.| ..+.|+...|+|||++ -...=.+..|+++.+. .. | .. +. +++++.|.+++.
T Consensus 260 ~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~ 335 (373)
T PF02684_consen 260 AADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KYISLPNIIAGREVVPELIQEDATPENIAAELL 335 (373)
T ss_pred hCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CEeechhhhcCCCcchhhhcccCCHHHHHHHHH
Confidence 8888 666555 6778999999999883 4444566677777655 32 1 11 12 899999999999
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHcCCCc
Q 012277 418 EILEGERGKELRRNAGKWRKLAKEAVAKGGSS 449 (467)
Q Consensus 418 ~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 449 (467)
++|.|+ +.++..+...+.+++....|.++
T Consensus 336 ~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 336 ELLENP---EKRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHhcCH---HHHHHHHHHHHHHHHhhhhccCC
Confidence 999997 55666666666666555556655
No 110
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.20 E-value=0.0017 Score=64.14 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=71.9
Q ss_pred eEEEeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccccce
Q 012277 283 VVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGC 358 (467)
Q Consensus 283 ~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~~~~ 358 (467)
.+++-.|+... ...+++..++... .+.+++++..+..... ..... ..+||++.+++|+. .++.++|+
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~~~--p~~~~vliG~~~~~~~-~~~~~----~~~nV~~~G~~~~~~l~~~l~~~Dv-- 276 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAKAR--PDWSFVLIGPVDVSID-PSALL----RLPNVHYLGPKPYKELPAYLAGFDV-- 276 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHHHC--CCCEEEEECCCcCccC-hhHhc----cCCCEEEeCCCCHHHHHHHHHhCCE--
Confidence 45566788763 3344444443321 2345554433211111 11111 24799999999866 56888998
Q ss_pred eee--------cCCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 359 FVT--------HCGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 359 ~I~--------HGG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+|. .++. +.+.|++++|+|+|..+. ...++.. + |..+..-+.+++.++|.+++.++
T Consensus 277 ~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 277 AILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIADDPEEFVAAIEKALLED 341 (373)
T ss_pred EecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeCCCHHHHHHHHHHHHhcC
Confidence 553 2333 468999999999998753 2223333 3 33333237999999999987654
No 111
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.18 E-value=0.0015 Score=64.99 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=70.6
Q ss_pred EEEeecccccCCHHHHHHHHHHHhhCCCcEE-EEEeCCccCcCCccccccccCCCcEEEEeccc-h---Hhhhcccccce
Q 012277 284 VYVSYGSFVELKAEEMEELAWGLKSSDQHFL-WVVRESEQAKLPKKFSDETLTSHKSLVVSWCP-Q---LEVLAHEATGC 358 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i-~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p-~---~~lL~~~~~~~ 358 (467)
+++..|.....+.+-+..+++++..++.++. +.+|.... . ...++...++.. + ..++..+|+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~----~-------~~~~v~~~g~~~~~~~l~~~y~~aDv-- 309 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP----F-------TAGNVVNHGFETDKRKLMSALNQMDA-- 309 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc----c-------cccceEEecCcCCHHHHHHHHHhCCE--
Confidence 4444554322234445678888887765443 33333211 1 335676677653 2 356777998
Q ss_pred eeecC----ChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHH
Q 012277 359 FVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCIS 417 (467)
Q Consensus 359 ~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~ 417 (467)
||.-. --.++.||+++|+|+|+....+ ... +.+. +.|..++.-+.++|+++++
T Consensus 310 fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~d~~~La~~~~ 366 (405)
T PRK10125 310 LVFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEEEVLQLAQLSK 366 (405)
T ss_pred EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCCCHHHHHhccC
Confidence 88743 2368999999999999987654 222 3345 5688887557888887543
No 112
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.15 E-value=2.7e-05 Score=67.62 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=87.9
Q ss_pred CCCceEEEeeccccc-CCHHHHHHHHHHHhh--CCCcEEEEEe-CCccCcCCccccccccCCCcEEEEeccch---Hhhh
Q 012277 279 AKESVVYVSYGSFVE-LKAEEMEELAWGLKS--SDQHFLWVVR-ESEQAKLPKKFSDETLTSHKSLVVSWCPQ---LEVL 351 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~p~---~~lL 351 (467)
.+++.+++..|.... -..+.+-.++.-+.+ .+.-.++++| +.....+ ....+......++.+.+++++ ..++
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 90 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKEL-KNLIEKLNLKENIIFLGYVPDDELDELY 90 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHH-HHHHHHTTCGTTEEEEESHSHHHHHHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccc-cccccccccccccccccccccccccccc
Confidence 455677888888763 233333333333332 2333344444 1111111 111111125679999999982 3888
Q ss_pred cccccceeeec----CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 352 AHEATGCFVTH----CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 352 ~~~~~~~~I~H----GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
..+++ +|+. |...++.||+++|+|+|+.. ...+...+... +.|..++..+.+++.++|.++++++
T Consensus 91 ~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 91 KSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp HHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeCCCCHHHHHHHHHHHHCCH
Confidence 89999 8887 66789999999999999744 66677777777 7788888559999999999999886
No 113
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.14 E-value=1.5e-05 Score=77.42 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=77.2
Q ss_pred CCCceEEEeecccccCC-H---HHHHHHHHHHhhC-CCcEEEEEeCC--ccCcCCccccccccCCCcEEEEecc---chH
Q 012277 279 AKESVVYVSYGSFVELK-A---EEMEELAWGLKSS-DQHFLWVVRES--EQAKLPKKFSDETLTSHKSLVVSWC---PQL 348 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~---p~~ 348 (467)
..++.|++++=...... + ..+..++++|.+. +.++||..+.. ....+-+.+. . . +|+.+.+-+ ...
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~-~--~-~~v~~~~~l~~~~~l 253 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLK-K--Y-DNVRLIEPLGYEEYL 253 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHT-T----TTEEEE----HHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhc-c--c-CCEEEECCCCHHHHH
Confidence 56788999885544433 3 4555566666665 67888888732 1122211121 1 3 488888555 455
Q ss_pred hhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhH-hccccccCCcCHHHHHHHHHHHhcCc
Q 012277 349 EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDV-WKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 349 ~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
.+|.++++ +|+-.| |-.-||.+.|+|+|.+=. +..|-+-. .|....+ ..+.++|.+++.+++.+.
T Consensus 254 ~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~------~geRqe~r~~~~nvlv-~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 254 SLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRD------SGERQEGRERGSNVLV-GTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHHHESE--EEESSH-HHHHHGGGGT--EEECSS------S-S-HHHHHTTSEEEE-TSSHHHHHHHHHHHHH-H
T ss_pred HHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecC------CCCCHHHHhhcceEEe-CCCHHHHHHHHHHHHhCh
Confidence 88899999 999999 555599999999999932 22333333 0333222 478999999999999874
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.14 E-value=0.00027 Score=69.60 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=90.8
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhC-----CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhccccc
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSS-----DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEAT 356 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~ 356 (467)
..+++.|... +.+.+..++++++.+ +.++++...+.....+ ....+....++++.+.++.++. .++..+++
T Consensus 205 ~~i~~vgrl~--~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 281 (372)
T cd04949 205 HKIITVARLA--PEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKL-KELIEELGLEDYVFLKGYTRDLDEVYQKAQL 281 (372)
T ss_pred CeEEEEEccC--cccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHH-HHHHHHcCCcceEEEcCCCCCHHHHHhhhhE
Confidence 4566777764 233344444444332 3455554433321111 1111121256788888877665 88999999
Q ss_pred ceeeecC---C-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc-chHHHHHH
Q 012277 357 GCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE-RGKELRRN 431 (467)
Q Consensus 357 ~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~-~~~~~~~~ 431 (467)
+|.-. | ..++.||+++|+|+|+..... .....++.. ..|..++.-+.+++.++|.++++|+ ...++.++
T Consensus 282 --~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 355 (372)
T cd04949 282 --SLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEA 355 (372)
T ss_pred --EEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 66432 3 458999999999999865331 245556666 7788877668999999999999986 22345555
Q ss_pred HHHHHHHH
Q 012277 432 AGKWRKLA 439 (467)
Q Consensus 432 a~~l~~~~ 439 (467)
+++.++.+
T Consensus 356 a~~~~~~~ 363 (372)
T cd04949 356 AYENAERY 363 (372)
T ss_pred HHHHHHHh
Confidence 55554443
No 115
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.07 E-value=7.1e-05 Score=74.09 Aligned_cols=141 Identities=18% Similarity=0.314 Sum_probs=86.8
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccC--cCCccccccccCCCcEEEEeccchHhhh---cc
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQA--KLPKKFSDETLTSHKSLVVSWCPQLEVL---AH 353 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~~p~~~lL---~~ 353 (467)
+++.++|++|....-..++.+..-.+.|++.+...+|........ .+...+......++++.+.++.|..+-| ..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 456799999999998899999999999999999888887654211 1111122222256789988888766444 45
Q ss_pred cccceee---ecCChhhHHHHHHhCCCeeecCCcc-chhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 354 EATGCFV---THCGWNSTMEALSLGVPMVAMPQWS-DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 354 ~~~~~~I---~HGG~~t~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
+|+ ++ ..+|.+|++|||++|||+|.+|-.. =...-|..+..+ |+...+- -+.++-.+.-.++-.|.
T Consensus 362 ~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA-~s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 362 ADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIA-DSEEEYVEIAVRLATDP 431 (468)
T ss_dssp -SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB--SSHHHHHHHHHHHHH-H
T ss_pred CCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcC-CCHHHHHHHHHHHhCCH
Confidence 776 65 4678999999999999999998433 344566777788 9887765 35777777777777775
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=0.0014 Score=62.68 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=89.6
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHH----hhC-CCcEEEEEeCCccCcCCccc-cccccCCCcEEEE---eccchHh
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGL----KSS-DQHFLWVVRESEQAKLPKKF-SDETLTSHKSLVV---SWCPQLE 349 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al----~~~-~~~~i~~~~~~~~~~l~~~~-~~~~~~~~~v~~~---~~~p~~~ 349 (467)
+++..|++|+=-..+.. +-+..+.+++ ++. ...++...... +.-.++ ..++...+++++. +|.+...
T Consensus 202 ~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~---~~v~e~~~~~L~~~~~v~li~pl~~~~f~~ 277 (383)
T COG0381 202 KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR---PRVRELVLKRLKNVERVKLIDPLGYLDFHN 277 (383)
T ss_pred ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC---hhhhHHHHHHhCCCCcEEEeCCcchHHHHH
Confidence 34568888765544433 4445555544 444 33444444332 111122 1332234568876 5788889
Q ss_pred hhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHHH
Q 012277 350 VLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELR 429 (467)
Q Consensus 350 lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~ 429 (467)
++.++.+ ++|-.| |-.-||-..|+|++++-...|++. ..+. |.-..+ ..+.+.|.+++..+++++ +..
T Consensus 278 L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v~a-gt~~lv-g~~~~~i~~~~~~ll~~~---~~~ 345 (383)
T COG0381 278 LMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GVEA-GTNILV-GTDEENILDAATELLEDE---EFY 345 (383)
T ss_pred HHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc----ceec-CceEEe-CccHHHHHHHHHHHhhCh---HHH
Confidence 9999998 999876 556899999999999999999987 2233 322222 567899999999999997 555
Q ss_pred HHHH
Q 012277 430 RNAG 433 (467)
Q Consensus 430 ~~a~ 433 (467)
++-+
T Consensus 346 ~~m~ 349 (383)
T COG0381 346 ERMS 349 (383)
T ss_pred HHHh
Confidence 5433
No 117
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.05 E-value=0.0025 Score=65.10 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=64.1
Q ss_pred CCCcEEEEeccchHhhhcccccceeeecC----ChhhHHHHHHhCCCeeecCCccchhhHHHHHHhH----h-ccccccC
Q 012277 335 TSHKSLVVSWCPQLEVLAHEATGCFVTHC----GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDV----W-KTGLKFP 405 (467)
Q Consensus 335 ~~~~v~~~~~~p~~~lL~~~~~~~~I~HG----G~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----~-G~G~~l~ 405 (467)
..++|.+.+.....++++.+|+ +|.-. --.++.||+++|+|+|+. |.......+++. . ..|..++
T Consensus 352 l~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 352 LEDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVP 425 (475)
T ss_pred CCCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEEC
Confidence 5689999996666799999999 77543 346899999999999985 344555666662 0 2677776
Q ss_pred CcCHHHHHHHHHHHhcCc
Q 012277 406 IVKRDAIADCISEILEGE 423 (467)
Q Consensus 406 ~~~~~~l~~~i~~vl~~~ 423 (467)
..+.+++.++|.++++|+
T Consensus 426 ~~d~~~la~ai~~ll~~~ 443 (475)
T cd03813 426 PADPEALARAILRLLKDP 443 (475)
T ss_pred CCCHHHHHHHHHHHhcCH
Confidence 668999999999999986
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.00 E-value=0.00023 Score=70.44 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCCcEEEEeccchH---hhhcccccceeeec----CCh-hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC-
Q 012277 335 TSHKSLVVSWCPQL---EVLAHEATGCFVTH----CGW-NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP- 405 (467)
Q Consensus 335 ~~~~v~~~~~~p~~---~lL~~~~~~~~I~H----GG~-~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~- 405 (467)
...++.+.+++|+. .+++.+|+ +|.. .|+ .++.||+++|+|+|+... ..+...+++. ..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEeC
Confidence 45688899999865 66999999 7753 343 577899999999999764 3455666666 6787554
Q ss_pred CcCHHHHHHHHHHHhcCc
Q 012277 406 IVKRDAIADCISEILEGE 423 (467)
Q Consensus 406 ~~~~~~l~~~i~~vl~~~ 423 (467)
..+.+++.++|.++++|+
T Consensus 328 ~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 328 PMTSDSIISDINRTLADP 345 (380)
T ss_pred CCCHHHHHHHHHHHHcCH
Confidence 668999999999999997
No 119
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.98 E-value=0.00017 Score=71.97 Aligned_cols=132 Identities=16% Similarity=0.225 Sum_probs=82.1
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhC---C--CcEEEEEeCCccCcCCccccc---cccCCCcEEEEeccchHh---
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSS---D--QHFLWVVRESEQAKLPKKFSD---ETLTSHKSLVVSWCPQLE--- 349 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~---~--~~~i~~~~~~~~~~l~~~~~~---~~~~~~~v~~~~~~p~~~--- 349 (467)
++..+++.|..... +.+..+++++.++ + .++.|...+.. ...+.+.+ .....++|.+.+|+++.+
T Consensus 229 ~~~~il~~Grl~~~--Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g--~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~ 304 (407)
T cd04946 229 DTLRIVSCSYLVPV--KRVDLIIKALAALAKARPSIKIKWTHIGGG--PLEDTLKELAESKPENISVNFTGELSNSEVYK 304 (407)
T ss_pred CCEEEEEeeccccc--cCHHHHHHHHHHHHHhCCCceEEEEEEeCc--hHHHHHHHHHHhcCCCceEEEecCCChHHHHH
Confidence 44567778877632 2233344444322 2 35555443321 11111111 111346789999999764
Q ss_pred hhcc--cccceeeecCC----hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC-CcCHHHHHHHHHHHhcC
Q 012277 350 VLAH--EATGCFVTHCG----WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP-IVKRDAIADCISEILEG 422 (467)
Q Consensus 350 lL~~--~~~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~l~~~i~~vl~~ 422 (467)
++.. +++ +|...- -.+++||+++|+|+|+.. .......+.+. +.|..+. .-+.+++.++|.++++|
T Consensus 305 ~~~~~~~~v--~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~-~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 305 LYKENPVDV--FVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNG-GNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHhhcCCCE--EEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCC-CcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 4444 455 776543 468999999999999855 34466667666 6898887 56899999999999987
Q ss_pred c
Q 012277 423 E 423 (467)
Q Consensus 423 ~ 423 (467)
+
T Consensus 378 ~ 378 (407)
T cd04946 378 E 378 (407)
T ss_pred H
Confidence 5
No 120
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.96 E-value=0.0028 Score=64.28 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=76.7
Q ss_pred eEEEeeccccc--CCHHHHHHHHHHHhhC-CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccccce
Q 012277 283 VVYVSYGSFVE--LKAEEMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGC 358 (467)
Q Consensus 283 ~V~vs~Gs~~~--~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~~ 358 (467)
.+..+.|.+.. ....++..+...++.. +.+++++..+.....+ ....+.....++|++.+|..+. .++..+|+
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeL-k~la~elgL~d~V~FlG~~~Dv~~~LaaADV-- 475 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEA-QKRAEQLGILERILFVGASRDVGYWLQKMNV-- 475 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHH-HHHHHHcCCCCcEEECCChhhHHHHHHhCCE--
Confidence 45556666542 2334455555555443 3454444433211111 1111111145889999987554 78999999
Q ss_pred eeec---CC-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHH
Q 012277 359 FVTH---CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCI 416 (467)
Q Consensus 359 ~I~H---GG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i 416 (467)
+|.. -| -+++.||+++|+|+|+... ..+...+.+. ..|..++.-+.+.+.+++
T Consensus 476 fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 476 FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDAQTVNLDQAC 532 (578)
T ss_pred EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCCChhhHHHHH
Confidence 8863 45 4699999999999998764 4566777777 788888744555555554
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00021 Score=57.00 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=67.3
Q ss_pred EEEeecccccCCHHHHHHH-HHHHhhC-CCcEEEEEeCCccCcCCccccccccCCCcEEEEec--cc-hHhhhcccccce
Q 012277 284 VYVSYGSFVELKAEEMEEL-AWGLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSW--CP-QLEVLAHEATGC 358 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~-~~al~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~--~p-~~~lL~~~~~~~ 358 (467)
||+|.||....=...+... ..-+.+. ..++|+++|... ..| ..+ .++.+| -+ .+.+...+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--~kp--------vag-l~v~~F~~~~kiQsli~darI-- 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--IKP--------VAG-LRVYGFDKEEKIQSLIHDARI-- 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--ccc--------ccc-cEEEeechHHHHHHHhhcceE--
Confidence 7899999842111111110 1122233 358899997742 222 111 234443 33 4477777777
Q ss_pred eeecCChhhHHHHHHhCCCeeecCCcc--------chhhHHHHHHhHhcccccc
Q 012277 359 FVTHCGWNSTMEALSLGVPMVAMPQWS--------DQSTNAKYILDVWKTGLKF 404 (467)
Q Consensus 359 ~I~HGG~~t~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~G~~l 404 (467)
+|+|+|.||+..++..++|.+++|-.. .|-..|..+.+. +.=...
T Consensus 69 VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~ 121 (161)
T COG5017 69 VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVAC 121 (161)
T ss_pred EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEE
Confidence 999999999999999999999999644 466677777777 654444
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.77 E-value=0.00032 Score=67.65 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=81.8
Q ss_pred HhhcCCCCceEEEeecccc---cCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEe--ccchH
Q 012277 274 WLNDRAKESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--WCPQL 348 (467)
Q Consensus 274 ~l~~~~~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~--~~p~~ 348 (467)
+++...+++.|.+..|+.. ..+.+.+.++++.|.+.+.++++..++.......+.+.+. .+. ..+.+ -+++.
T Consensus 172 ~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~--~~~-~~l~g~~sL~el 248 (319)
T TIGR02193 172 FLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEA--LPG-AVVLPKMSLAEV 248 (319)
T ss_pred hhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhh--CCC-CeecCCCCHHHH
Confidence 4433234567777777643 4578899999999876677777665543222222223222 222 22333 23444
Q ss_pred -hhhcccccceeeecCChhhHHHHHHhCCCeeec--CCccchhh-HHHHHHhHhccccccCCcCHHHHHHHHHHHh
Q 012277 349 -EVLAHEATGCFVTHCGWNSTMEALSLGVPMVAM--PQWSDQST-NAKYILDVWKTGLKFPIVKRDAIADCISEIL 420 (467)
Q Consensus 349 -~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~--P~~~DQ~~-na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl 420 (467)
.++.+|++ +|+. --|.++=|.+.|+|+|.+ |....++. ......-. .+..+...+++++.+++.++|
T Consensus 249 ~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~--~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 249 AALLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVAL--LGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEE--ccCccCCCCHHHHHHHHHhhC
Confidence 89999999 9987 678999999999999985 22211110 00000000 011133889999999998775
No 123
>PLN02939 transferase, transferring glycosyl groups
Probab=97.76 E-value=0.031 Score=60.18 Aligned_cols=135 Identities=8% Similarity=0.126 Sum_probs=78.4
Q ss_pred eEEEeecccccC-CHHHHHHHHHHHhhCCCcEEEEEeCCcc---CcCCccccccccCCCcEEEEeccchH---hhhcccc
Q 012277 283 VVYVSYGSFVEL-KAEEMEELAWGLKSSDQHFLWVVRESEQ---AKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 355 (467)
Q Consensus 283 ~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~---~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~ 355 (467)
+++...|..... ..+.+...+..+...+.+++++..+... ..+ ..+.+++...++|.+.++.+.. .+++.+|
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL-~~La~~l~l~drV~FlG~~de~lah~IYAaAD 858 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREF-EGIADQFQSNNNIRLILKYDEALSHSIYAASD 858 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHH-HHHHHHcCCCCeEEEEeccCHHHHHHHHHhCC
Confidence 466667777632 3344333333333345666555433211 011 1122222245689998888765 5899999
Q ss_pred cceeeecC---C-hhhHHHHHHhCCCeeecCCcc--chhhH--HH-HHHhHhccccccCCcCHHHHHHHHHHHhc
Q 012277 356 TGCFVTHC---G-WNSTMEALSLGVPMVAMPQWS--DQSTN--AK-YILDVWKTGLKFPIVKRDAIADCISEILE 421 (467)
Q Consensus 356 ~~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~--DQ~~n--a~-~v~~~~G~G~~l~~~~~~~l~~~i~~vl~ 421 (467)
+ ||.-. | ..+.+||+++|+|.|+....+ |...+ .. ..++. +-|...+..+++++.++|.+++.
T Consensus 859 I--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 859 M--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred E--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEecCCCHHHHHHHHHHHHH
Confidence 9 88642 2 358999999999999875543 22111 11 11223 45766665689999999988764
No 124
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.74 E-value=0.0059 Score=63.09 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=54.9
Q ss_pred cEEEEeccchH-hhhcccccceeeecC---C-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHH
Q 012277 338 KSLVVSWCPQL-EVLAHEATGCFVTHC---G-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAI 412 (467)
Q Consensus 338 ~v~~~~~~p~~-~lL~~~~~~~~I~HG---G-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l 412 (467)
++.+.++.++. .+++.+|+ ||.-. | ..++.||+++|+|+|+....+... +.+. +.|... -+.+++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGll~--~D~Eaf 671 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCLTY--KTSEDF 671 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeEec--CCHHHH
Confidence 47777887765 59999999 88742 3 368999999999999976654321 2223 333333 368999
Q ss_pred HHHHHHHhcCc
Q 012277 413 ADCISEILEGE 423 (467)
Q Consensus 413 ~~~i~~vl~~~ 423 (467)
.++|.++|.++
T Consensus 672 AeAI~~LLsd~ 682 (794)
T PLN02501 672 VAKVKEALANE 682 (794)
T ss_pred HHHHHHHHhCc
Confidence 99999999886
No 125
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.67 E-value=0.00072 Score=65.56 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=79.6
Q ss_pred CCCcEEEEeccchHhhh---cccccceeeecC-------Ch------hhHHHHHHhCCCeeecCCccchhhHHHHHHhHh
Q 012277 335 TSHKSLVVSWCPQLEVL---AHEATGCFVTHC-------GW------NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVW 398 (467)
Q Consensus 335 ~~~~v~~~~~~p~~~lL---~~~~~~~~I~HG-------G~------~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~ 398 (467)
..+||.+.+|+|+.++. .. +.+++...- .+ +-+.+++++|+|+|+. ++...+..|++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 56799999999988664 33 333332211 11 2277899999999984 467889999999
Q ss_pred ccccccCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 012277 399 KTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFV 457 (467)
Q Consensus 399 G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 457 (467)
++|..++ +.+++.+++.++.. ++..+|+++++++++++++ |.-...++++++
T Consensus 279 ~~G~~v~--~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~ 330 (333)
T PRK09814 279 GLGFVVD--SLEELPEIIDNITE-EEYQEMVENVKKISKLLRN----GYFTKKALVDAI 330 (333)
T ss_pred CceEEeC--CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhc----chhHHHHHHHHH
Confidence 9999997 66889999988643 4455799999999999985 443344444444
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.62 E-value=0.00014 Score=60.30 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=67.3
Q ss_pred eEEEeeccccc-CCHHHHHH-HHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhccccccee
Q 012277 283 VVYVSYGSFVE-LKAEEMEE-LAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGCF 359 (467)
Q Consensus 283 ~V~vs~Gs~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~~~ 359 (467)
+.++++|+... ...+.+-+ +++.+++...++.+.+-+.. ++.+.+. ..+||++.+|++.. +++..+++.+.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~----~~~l~~~--~~~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG----PDELKRL--RRPNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES----S-HHCCH--HHCTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC----HHHHHHh--cCCCEEEcCCHHHHHHHHHhCCEEEE
Confidence 35556666652 23443333 55555433223333332221 1122221 24699999999644 88999999444
Q ss_pred eec--CC-hhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 360 VTH--CG-WNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 360 I~H--GG-~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+. .| -+++.|++++|+|+|+.+. .....++.. +.|..+ .-+++++.++|.++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-CCCHHHHHHHHHHHhcC
Confidence 332 23 4899999999999999775 123344446 777666 45899999999999875
No 127
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.52 E-value=0.0068 Score=59.19 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCCCcce-EecCCCCCCCCCCCccCHHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPL-EAISDGYDEGGYAQAESIEAYLE 90 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
|||||+-..+.|++.-+.++.++|+++ +.+|++++.+.+.+.++. ...+.- +.++.. . . ... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~P~vd~vi~~~~~--~-~---~~~----~- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR---MPEVNEAIPMPLG--H-G---ALE----I- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc---CCccCEEEecccc--c-c---hhh----h-
Confidence 589999999999999999999999986 999999999998888873 223322 222211 0 0 000 0
Q ss_pred HHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCcee
Q 012277 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (467)
Q Consensus 91 ~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (467)
....++++.+++ .+||++|.=....-...++...|+|.-+
T Consensus 67 -------~~~~~l~~~lr~--~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -------GERRRLGHSLRE--KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -------HHHHHHHHHHHh--cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112344455554 3499999775555577778888888554
No 128
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.48 E-value=0.013 Score=52.53 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCCcEEEEeccch-H---hhhcccccceeeecCC----hhhHHHHHHhCCCeeecCCcc
Q 012277 335 TSHKSLVVSWCPQ-L---EVLAHEATGCFVTHCG----WNSTMEALSLGVPMVAMPQWS 385 (467)
Q Consensus 335 ~~~~v~~~~~~p~-~---~lL~~~~~~~~I~HGG----~~t~~eal~~GvP~v~~P~~~ 385 (467)
...|+.+.++++. + .++..+++ +|+... .+++.||+++|+|+|+.+...
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4578888888632 2 44445998 888886 789999999999999977544
No 129
>PHA01633 putative glycosyl transferase group 1
Probab=97.48 E-value=0.0015 Score=62.77 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=66.6
Q ss_pred CCCcEEEEe---ccchH---hhhcccccceeeec---CCh-hhHHHHHHhCCCeeecCC------ccch------hhHHH
Q 012277 335 TSHKSLVVS---WCPQL---EVLAHEATGCFVTH---CGW-NSTMEALSLGVPMVAMPQ------WSDQ------STNAK 392 (467)
Q Consensus 335 ~~~~v~~~~---~~p~~---~lL~~~~~~~~I~H---GG~-~t~~eal~~GvP~v~~P~------~~DQ------~~na~ 392 (467)
.+++|.+.+ ++++. .+++.+|+ +|.- =|+ .++.||+++|+|+|+.-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 567898884 45543 77889999 8864 244 578999999999998532 2232 33333
Q ss_pred HHH--hHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 012277 393 YIL--DVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLA 439 (467)
Q Consensus 393 ~v~--~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~ 439 (467)
... .. |.|...+..++++++++|..+++..+.++...++++.++++
T Consensus 277 ~~~~~~~-g~g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 277 EYYDKEH-GQKWKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HhcCccc-CceeeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 333 35 66777778899999999999965432223334444444444
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.38 E-value=0.015 Score=56.81 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=70.3
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCCCcc-eEecCCCCCCCCCCCccCHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIP-LEAISDGYDEGGYAQAESIEAYL 89 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (467)
++||||+-....|++.-+.++.++|+++ +.+|++++.+.+.+.++. ...+. ++.++..- ......+
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~P~id~vi~~~~~~--------~~~~~~~ 73 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE---NPEINALYGIKNKK--------AGASEKI 73 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc---CCCceEEEEecccc--------ccHHHHH
Confidence 5689999999999999999999999988 999999999998888773 22332 23333110 0000001
Q ss_pred HHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCcee
Q 012277 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (467)
Q Consensus 90 ~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (467)
.....+++++++ .+||++|.-........++...|.|..+
T Consensus 74 --------~~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 74 --------KNFFSLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --------HHHHHHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 122344555654 4599999764444456677777887654
No 131
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.29 E-value=0.013 Score=56.47 Aligned_cols=132 Identities=12% Similarity=0.069 Sum_probs=78.2
Q ss_pred CceEEEeecc-cc--cCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEe--ccchH-hhhccc
Q 012277 281 ESVVYVSYGS-FV--ELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--WCPQL-EVLAHE 354 (467)
Q Consensus 281 ~~~V~vs~Gs-~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~--~~p~~-~lL~~~ 354 (467)
++.|.+..|+ .. ..+.+.+.++++.+.+.|.++++..++..+....+.+.+. ..++.+.+ .+.+. .++.+|
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~---~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEG---FPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHcc---CCcceecCCCCHHHHHHHHHhC
Confidence 4455444444 32 4588899999998877777766554443222222222221 12333433 33444 889999
Q ss_pred ccceeeecCChhhHHHHHHhCCCeeec--CCccchh----hHHHHHHhHhccccccCCcCHHHHHHHHHHHhc
Q 012277 355 ATGCFVTHCGWNSTMEALSLGVPMVAM--PQWSDQS----TNAKYILDVWKTGLKFPIVKRDAIADCISEILE 421 (467)
Q Consensus 355 ~~~~~I~HGG~~t~~eal~~GvP~v~~--P~~~DQ~----~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~ 421 (467)
++ +|+. --|.++=|.+.|+|+|++ |...... .|...+. -++..+.++++|.+.++++++|.
T Consensus 255 ~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~---~~~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 255 KA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR---SPGKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred CE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec---CCCcccccCCHHHHHHHHHHHhh
Confidence 99 9987 568999999999999995 3221111 1111111 11222338899999999888763
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.28 E-value=0.012 Score=57.29 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCCCcc-eEecCCCCCCCCCCCccCHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIP-LEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
||||+-....|++.-+.++.++|+++ +.+|++++.+.+.+.++. ...+. ++.++..... .. ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~p~vd~vi~~~~~~~~------~~----~~~ 67 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE---NPDINALYGLDRKKAK------AG----ERK 67 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc---CCCccEEEEeChhhhc------ch----HHH
Confidence 69999999999999999999999987 899999999998888773 23342 3344321100 00 001
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCcee
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (467)
+. ....++..+++ .+||++|.-.....+..++...|.|.-+
T Consensus 68 ~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 68 LA-----NQFHLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HH-----HHHHHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11 11234455554 4599999765445577888888999654
No 133
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.038 Score=53.55 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
+||||++-...-|++.-.+++-+.|+++ +.++++++.+.+.+.+... ..+.-+........ +
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~---p~I~~vi~~~~~~~------~------- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN---PEIDKVIIIDKKKK------G------- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC---hHhhhhcccccccc------c-------
Confidence 4799999999999999999999999998 5999999999998888731 11221111111000 0
Q ss_pred HHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCcee
Q 012277 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (467)
Q Consensus 91 ~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (467)
........+.+.+++ ..||+||.=.-..-...++...++|.-.
T Consensus 65 ----~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ----LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ----cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 122234455555664 3499999886666688888888888555
No 134
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.17 E-value=0.19 Score=46.74 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc--ccccccCCCCCCCcceEecCCCCCCCCCCCccCHH-HHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF--FYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIE-AYLER 91 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (467)
||.| -.+-.-|+.=+..+..+|.++||+|.+-+-+. -.+.+. ..|+.+.++....-. .+. .....
T Consensus 2 kVwi-DI~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd----~ygf~~~~Igk~g~~-------tl~~Kl~~~ 69 (346)
T COG1817 2 KVWI-DIGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLD----LYGFPYKSIGKHGGV-------TLKEKLLES 69 (346)
T ss_pred eEEE-EcCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHH----HhCCCeEeecccCCc-------cHHHHHHHH
Confidence 4554 22334577778899999999999998877543 233333 568888888743311 222 11212
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccc
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (467)
..+. ..+.+++.+.. ||+.|. -....+..+|-.+|+|.|++.-+.
T Consensus 70 ~eR~--~~L~ki~~~~k-----pdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 70 AERV--YKLSKIIAEFK-----PDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHH--HHHHHHHhhcC-----CceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 2111 23445555544 699999 567779999999999999986543
No 135
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.08 E-value=0.066 Score=51.90 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCCCcc-eEecCCCCCCCCCCCccCHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSSSIP-LEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
||||+...+.|++.-+.++.++|++. +.+|++++.+.+.+.++. ...+. ++.++.. . . ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~p~id~v~~~~~~--~-~---~~~~------ 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER---MPEIRQAIDMPLG--H-G---ALEL------ 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc---CchhceeeecCCc--c-c---chhh------
Confidence 69999999999999999999999887 999999999888777763 22221 1222210 0 0 0000
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCce
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGA 138 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v 138 (467)
.....+++++++ .+||++|.-........++...|+|.-
T Consensus 66 ------~~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 66 ------TERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred ------hHHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 112244555554 359999987665567777788888854
No 136
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.93 E-value=0.001 Score=51.17 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=50.9
Q ss_pred hHHHHHhhcCCCCceEEEeecccccC---C--HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEE
Q 012277 269 EACMKWLNDRAKESVVYVSYGSFVEL---K--AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSL 340 (467)
Q Consensus 269 ~~l~~~l~~~~~~~~V~vs~Gs~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~ 340 (467)
..+..|+...+++|.|++|+||.... . ...+..+++++..++..+++.+.......+.+ +|+||+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~-------lP~nVR 97 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGE-------LPDNVR 97 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS--------TTTEE
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCC-------CCCCCC
Confidence 44566888888999999999998732 2 25889999999999999999998765555544 788875
No 137
>PRK14098 glycogen synthase; Provisional
Probab=96.85 E-value=0.024 Score=57.97 Aligned_cols=131 Identities=17% Similarity=0.125 Sum_probs=80.1
Q ss_pred ceEEEeecccccC-CHHHHHHHHHHHhhCCCcEEEEEeCCcc--CcCCccccccccCCCcEEEEeccchH---hhhcccc
Q 012277 282 SVVYVSYGSFVEL-KAEEMEELAWGLKSSDQHFLWVVRESEQ--AKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEA 355 (467)
Q Consensus 282 ~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~--~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~ 355 (467)
..++...|..... ..+.+.+.+..+.+.+.+++++..+... ..+ .++.++ .+++|.+.++++.. .+++.+|
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l-~~l~~~--~~~~V~~~g~~~~~~~~~~~a~aD 383 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRF-QDFAEE--HPEQVSVQTEFTDAFFHLAIAGLD 383 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH-HHHHHH--CCCCEEEEEecCHHHHHHHHHhCC
Confidence 3466777777632 3444444444444445666555433210 111 122222 46789999888764 6889999
Q ss_pred cceeeecC---Ch-hhHHHHHHhCCCeeecCCcc--chhhHHHHHHhHhccccccCCcCHHHHHHHHHHHh
Q 012277 356 TGCFVTHC---GW-NSTMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEIL 420 (467)
Q Consensus 356 ~~~~I~HG---G~-~t~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl 420 (467)
+ ++.-. |+ .+.+||+++|+|.|+....+ |... ...++. +.|...+..++++|.++|.+++
T Consensus 384 i--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 384 M--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred E--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCCCCHHHHHHHHHHHH
Confidence 9 88643 22 37789999999988866433 2211 111235 6788777678999999999876
No 138
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.02 Score=57.30 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccc----cccCCCcEEEEeccch---Hhhh
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSD----ETLTSHKSLVVSWCPQ---LEVL 351 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~----~~~~~~~v~~~~~~p~---~~lL 351 (467)
++..+||++++...-..++.+..-++-|+..+..++|..+++.....-..+++ ..-.++++++.+-.|. .+-+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 56779999999998888999999999999999999999987432222222221 1114578888776653 3666
Q ss_pred cccccceeee---cCChhhHHHHHHhCCCeeecCCccchhh---HHHHHHhHhccccccC
Q 012277 352 AHEATGCFVT---HCGWNSTMEALSLGVPMVAMPQWSDQST---NAKYILDVWKTGLKFP 405 (467)
Q Consensus 352 ~~~~~~~~I~---HGG~~t~~eal~~GvP~v~~P~~~DQ~~---na~~v~~~~G~G~~l~ 405 (467)
..+|+ |.- -||..|..|+|..|||+|..+ ++|+- -+-.+..+ |+-..+-
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~a-gi~e~vA 561 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNA-GIPELVA 561 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhc-CCchhhc
Confidence 67787 764 699999999999999999987 67664 23344455 6555553
No 139
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.58 E-value=0.02 Score=47.45 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=63.7
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (467)
|||+++.....| ...+++.|.++||+|++++.....+... ...++.+..++-+. .....++. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~---~~~~i~~~~~~~~~--------k~~~~~~~-~-- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE---IIEGIKVIRLPSPR--------KSPLNYIK-Y-- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh---HhCCeEEEEecCCC--------CccHHHHH-H--
Confidence 578777766666 4578999999999999999965543332 14678887775221 11222221 1
Q ss_pred hCchhHHHHHHHhcCCCCCccEEEECCchh---hHHHHHHHcC-CCceeeec
Q 012277 95 IGPQTLTELVEKMNGSDSPVDCIVYDSILL---WALDVAKKFG-LLGAPFLT 142 (467)
Q Consensus 95 ~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~---~~~~~A~~~g-iP~v~~~~ 142 (467)
. .+..++++. .||+|.+-.... .+..++...+ +|+|....
T Consensus 64 --~-~l~k~ik~~-----~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 64 --F-RLRKIIKKE-----KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred --H-HHHHHhccC-----CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 333444432 279998876543 2455677888 88886443
No 140
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.53 E-value=0.029 Score=56.42 Aligned_cols=152 Identities=18% Similarity=0.286 Sum_probs=97.4
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCcccc----ccccCCCcEEEEeccchHhhhcc-
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFS----DETLTSHKSLVVSWCPQLEVLAH- 353 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~----~~~~~~~~v~~~~~~p~~~lL~~- 353 (467)
++..+||++|--..-..++.++.-++.|+..+..++|....+-... ..|+ +....|++|.+.+-+.-.+=.++
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--HHHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 4566899988877777899999999999999999999997653221 1221 22226778887765544332222
Q ss_pred ----cccceeeecCChhhHHHHHHhCCCeeecCCccchh-hHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHH
Q 012277 354 ----EATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQS-TNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKEL 428 (467)
Q Consensus 354 ----~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~ 428 (467)
-.+.-..|. |..|.++.|++|||||.+|...--. --+-.+..+ |+|..+. -+.++-.+.-.++-.|.
T Consensus 834 ~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hlia-k~~eEY~~iaV~Latd~----- 905 (966)
T KOG4626|consen 834 QLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIA-KNREEYVQIAVRLATDK----- 905 (966)
T ss_pred hhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHh-hhHHHHHHHHHHhhcCH-----
Confidence 111124555 7899999999999999999654322 234445667 9998664 24555555555555553
Q ss_pred HHHHHHHHHHHHH
Q 012277 429 RRNAGKWRKLAKE 441 (467)
Q Consensus 429 ~~~a~~l~~~~~~ 441 (467)
...++++.++++
T Consensus 906 -~~L~~lr~~l~~ 917 (966)
T KOG4626|consen 906 -EYLKKLRAKLRK 917 (966)
T ss_pred -HHHHHHHHHHHH
Confidence 234444445544
No 141
>PHA01630 putative group 1 glycosyl transferase
Probab=96.29 E-value=0.16 Score=49.08 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=54.5
Q ss_pred eccchH---hhhcccccceeee---cCC-hhhHHHHHHhCCCeeecCCcc--chhh---HHHHHHh-----------Hhc
Q 012277 343 SWCPQL---EVLAHEATGCFVT---HCG-WNSTMEALSLGVPMVAMPQWS--DQST---NAKYILD-----------VWK 399 (467)
Q Consensus 343 ~~~p~~---~lL~~~~~~~~I~---HGG-~~t~~eal~~GvP~v~~P~~~--DQ~~---na~~v~~-----------~~G 399 (467)
+++|+. .+++.+|+ +|. ..| ..++.||+++|+|+|+....+ |.-. |.-.++. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 346655 56899999 774 333 458999999999999976433 3221 1111100 2 3
Q ss_pred cccccCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 012277 400 TGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLA 439 (467)
Q Consensus 400 ~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~ 439 (467)
+|..++ .+.+++.+++.+++.|.+-++.+++.+.-+...
T Consensus 273 ~G~~v~-~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~ 311 (331)
T PHA01630 273 VGYFLD-PDIEDAYQKLLEALANWTPEKKKENLEGRAILY 311 (331)
T ss_pred cccccC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 455444 367888888888887631114444444433333
No 142
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.19 E-value=0.27 Score=46.24 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=67.2
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEEEeCccccccccCCCCCCCcc-eEecCCCCCCCCCCCccCHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSLHRDSSSSSIP-LEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
|||++...+.|++.-+.++.++|+++. -+|++++.+.+.+.++. ...+. ++.++... ....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~---~p~id~v~~~~~~~------~~~~------- 64 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL---MPEVDRVIVLPKKH------GKLG------- 64 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc---CCccCEEEEcCCcc------cccc-------
Confidence 689999999999999999999999974 89999999988888773 22232 22222110 0001
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCcee
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (467)
......++..+++ ..+|++|.-........++...+++...
T Consensus 65 -----~~~~~~~~~~l~~--~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 65 -----LGARRRLARALRR--RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -----hHHHHHHHHHHhh--cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1223345555554 3489999876665555566666766543
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.60 E-value=0.84 Score=43.54 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=39.1
Q ss_pred chHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhh----HHHHHHhHhccccccC
Q 012277 346 PQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST----NAKYILDVWKTGLKFP 405 (467)
Q Consensus 346 p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~G~~l~ 405 (467)
|+..+|+.+|. .|||---.+.+.||+..|+|+.+++... +.. -.+.+++. |+-..+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECC
Confidence 67788998886 3444444689999999999999998876 333 23344444 5544443
No 144
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.56 E-value=0.094 Score=39.95 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=51.8
Q ss_pred cCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 012277 362 HCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKE 441 (467)
Q Consensus 362 HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 441 (467)
+|-..-+.|++++|+|+|.-.. ......+... .-+... + +.+++.++|..+++|+ ...++.+++..+.+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~-~~~~~~-~-~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDG-EHIITY-N-DPEELAEKIEYLLENP--EERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCC-CeEEEE-C-CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHH
Confidence 4555789999999999998764 3333332222 233333 3 8999999999999997 2344444444444443
Q ss_pred HHHcCCCcHHHHHHHH
Q 012277 442 AVAKGGSSDSNIDEFV 457 (467)
Q Consensus 442 ~~~~gg~~~~~~~~~~ 457 (467)
.-+....++.|+
T Consensus 80 ----~~t~~~~~~~il 91 (92)
T PF13524_consen 80 ----RHTWEHRAEQIL 91 (92)
T ss_pred ----hCCHHHHHHHHH
Confidence 454455555554
No 145
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.30 E-value=0.051 Score=45.66 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHHh
Q 012277 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKM 107 (467)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 107 (467)
.-+..|+++|.++||+|++++.......-+ ....++.+..++-.... . .......+ ..+.+++. .
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~-~~~~~~~~--------~~~~~~l~-~ 69 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE--EEEDGVRVHRLPLPRRP---W-PLRLLRFL--------RRLRRLLA-A 69 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S--EEETTEEEEEE--S-SS---S-GGGHCCHH--------HHHHHHCH-H
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc--cccCCceEEeccCCccc---h-hhhhHHHH--------HHHHHHHh-h
Confidence 356789999999999999999765554321 11357887777622211 0 00111111 12223331 1
Q ss_pred cCCCCCccEEEECCch-hhHHHHHH-HcCCCceeeec
Q 012277 108 NGSDSPVDCIVYDSIL-LWALDVAK-KFGLLGAPFLT 142 (467)
Q Consensus 108 ~~~~~~~DlVI~D~~~-~~~~~~A~-~~giP~v~~~~ 142 (467)
.+ .++|+|.+.... .....+++ ..++|+|....
T Consensus 70 ~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 70 RR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp CT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred hc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 22 457999998644 22334444 78999988544
No 146
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.13 E-value=0.16 Score=52.16 Aligned_cols=92 Identities=11% Similarity=0.128 Sum_probs=70.1
Q ss_pred CcEEEEeccc--hH-hhhcccccceeeecC---ChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHH
Q 012277 337 HKSLVVSWCP--QL-EVLAHEATGCFVTHC---GWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRD 410 (467)
Q Consensus 337 ~~v~~~~~~p--~~-~lL~~~~~~~~I~HG---G~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 410 (467)
.+|.+.++.. +. .++.++.+ +|.=+ |.+|.+||+.+|+|+| .+.....|+.. .=|..+. +..
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~--d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID--DIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC--CHH
Confidence 6788889888 33 77777777 88766 7789999999999999 55556677777 7787775 789
Q ss_pred HHHHHHHHHhcCc-chHHHHHHHHHHHHHHH
Q 012277 411 AIADCISEILEGE-RGKELRRNAGKWRKLAK 440 (467)
Q Consensus 411 ~l~~~i~~vl~~~-~~~~~~~~a~~l~~~~~ 440 (467)
+|.++|..+|.+. .+..+...+-+.+++..
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999986 44455555555555544
No 147
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.12 E-value=0.056 Score=47.65 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=63.3
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-CCCCcceEecCCCCCC---CCCCCccCHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDE---GGYAQAESIEAYL 89 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~ 89 (467)
||||+..--|. +---+..|+++|.+.||+|+++.+...+.-.-+.. -...+.......+... ..+.-.+.+..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 68888777666 55668889999987789999999987655443211 1122333222111111 0111122322222
Q ss_pred HHHHHhCchhHHHHHHHhcCCCCCccEEEECCc----------h---hhHHHHHHHcCCCceeeeccc
Q 012277 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI----------L---LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 90 ~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~----------~---~~~~~~A~~~giP~v~~~~~~ 144 (467)
.. .++.+... .+||+||+..- + ..++.-|..+|||.|.+|...
T Consensus 80 ~~-----------al~~~~~~-~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 80 KL-----------ALDGLLPD-KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HH-----------HHHCTSTT-SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HH-----------HHHhhhcc-CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 21 12222211 23799998632 2 335666778899999987643
No 148
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=94.59 E-value=0.37 Score=48.73 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=70.4
Q ss_pred EeccchH---hhhcccccceeeec---CCh-hhHHHHHHhCCC----eeecCCccchhhHHHHHHhHhccccccCCcCHH
Q 012277 342 VSWCPQL---EVLAHEATGCFVTH---CGW-NSTMEALSLGVP----MVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRD 410 (467)
Q Consensus 342 ~~~~p~~---~lL~~~~~~~~I~H---GG~-~t~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 410 (467)
.+.+++. .++..+|+ ++.- =|+ .++.||+++|+| +|+.-..+- +. .+ +-|..++..+.+
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~---~l-~~gllVnP~d~~ 410 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQ---EL-NGALLVNPYDID 410 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hH---Hh-CCcEEECCCCHH
Confidence 3566666 55789999 8763 365 588899999999 666544432 22 23 346666666899
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 012277 411 AIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLA 461 (467)
Q Consensus 411 ~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~ 461 (467)
+++++|.++|+.+. ++-+++.+++.+.+.+ -+...-+++++++|.
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 99999999998641 2556666666666553 455667778887764
No 149
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.93 E-value=3.2 Score=39.22 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=56.5
Q ss_pred CCcEEEEeccc---hHhhhcccccceeeec---CChhh-HHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcC
Q 012277 336 SHKSLVVSWCP---QLEVLAHEATGCFVTH---CGWNS-TMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVK 408 (467)
Q Consensus 336 ~~~v~~~~~~p---~~~lL~~~~~~~~I~H---GG~~t-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 408 (467)
..++.+.++++ ...++..+++ ++.. .|.|. +.||+++|+|++.... ......+.+. +.|......+
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~~~~~~~ 328 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGLLVPPGD 328 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceEecCCCC
Confidence 47788889998 2256777887 7776 35544 5999999999977653 3333444444 4466333336
Q ss_pred HHHHHHHHHHHhcCc
Q 012277 409 RDAIADCISEILEGE 423 (467)
Q Consensus 409 ~~~l~~~i~~vl~~~ 423 (467)
.+++.+++..++++.
T Consensus 329 ~~~~~~~i~~~~~~~ 343 (381)
T COG0438 329 VEELADALEQLLEDP 343 (381)
T ss_pred HHHHHHHHHHHhcCH
Confidence 899999999999885
No 150
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=93.63 E-value=7.5 Score=37.80 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=36.9
Q ss_pred cEEEEeccchH---hhhcccccceeeecCChhhHHHHHHhCCCeee--cCCccchhhHHH
Q 012277 338 KSLVVSWCPQL---EVLAHEATGCFVTHCGWNSTMEALSLGVPMVA--MPQWSDQSTNAK 392 (467)
Q Consensus 338 ~v~~~~~~p~~---~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~--~P~~~DQ~~na~ 392 (467)
.+.+.+|+||. .+|-.||+ -+-- |--|+.-|..+|+|.|= +| |.++|.
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~--NfVR-GEDSfVRAqwAgkPFvWhIYp----Q~d~aH 297 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDF--NFVR-GEDSFVRAQWAGKPFVWHIYP----QEDDAH 297 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCcc--ceEe-cchHHHHHHHhCCCceEecCc----CchhhH
Confidence 44556999987 89999998 4444 78899999999999974 66 555544
No 151
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=93.24 E-value=0.19 Score=49.45 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=77.8
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEE-eccchHhhhcccccceeeecCChhhHHHHHHhCCC
Q 012277 299 MEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVV-SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVP 377 (467)
Q Consensus 299 ~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~-~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP 377 (467)
...+. .+.+.+..+++..++.......... . ..+++... +..+..++|..+|+ +||=- .+.+.|.+..++|
T Consensus 219 ~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~--~--~~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KP 290 (369)
T PF04464_consen 219 FEKLN-FLLKNNYVLIIKPHPNMKKKFKDFK--E--DNSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKP 290 (369)
T ss_dssp HHHHH-HHHTTTEEEEE--SHHHHTT----T--T---TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--
T ss_pred HHHHH-HHhCCCcEEEEEeCchhhhchhhhh--c--cCCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCC
Confidence 33344 5565566666555443222221101 0 45777776 45567799999999 99986 5689999999999
Q ss_pred eeecCCccchhhHHHHHHhHhccccccC-------CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcH
Q 012277 378 MVAMPQWSDQSTNAKYILDVWKTGLKFP-------IVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSD 450 (467)
Q Consensus 378 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~-------~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 450 (467)
++......|++... . |.-.... --+.++|.++|..++.++ ..++++.++..+++-+ ...|.+++
T Consensus 291 iify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~e 361 (369)
T PF04464_consen 291 IIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYNFEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSE 361 (369)
T ss_dssp EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESSHHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHH
T ss_pred EEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCCHHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHH
Confidence 99887666666333 1 3332221 346799999999998775 2456666777777753 23444444
Q ss_pred HHHHHH
Q 012277 451 SNIDEF 456 (467)
Q Consensus 451 ~~~~~~ 456 (467)
+-++.+
T Consensus 362 ri~~~I 367 (369)
T PF04464_consen 362 RIVNYI 367 (369)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 152
>PRK14099 glycogen synthase; Provisional
Probab=92.89 E-value=1.5 Score=44.94 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=70.6
Q ss_pred eEEEeeccccc-CCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCcccc---ccccCCCcE-EEEeccchH-hhh-cccc
Q 012277 283 VVYVSYGSFVE-LKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFS---DETLTSHKS-LVVSWCPQL-EVL-AHEA 355 (467)
Q Consensus 283 ~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~---~~~~~~~~v-~~~~~~p~~-~lL-~~~~ 355 (467)
+++...|.... -..+.+.+.+..+.+.+.+++++..+. ..+.+.+. ++ .++++ .+.+|-... .++ +.+|
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~--~~~~~~l~~l~~~--~~~~v~~~~G~~~~l~~~~~a~aD 371 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGD--AELEARFRAAAQA--YPGQIGVVIGYDEALAHLIQAGAD 371 (485)
T ss_pred cEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCC--HHHHHHHHHHHHH--CCCCEEEEeCCCHHHHHHHHhcCC
Confidence 45555677652 123333333333333355665554332 11112221 12 34565 466774332 334 4688
Q ss_pred cceeee---cCChh-hHHHHHHhCCCeeecCCcc--chhhHHH---HHHhHhccccccCCcCHHHHHHHHHH---HhcCc
Q 012277 356 TGCFVT---HCGWN-STMEALSLGVPMVAMPQWS--DQSTNAK---YILDVWKTGLKFPIVKRDAIADCISE---ILEGE 423 (467)
Q Consensus 356 ~~~~I~---HGG~~-t~~eal~~GvP~v~~P~~~--DQ~~na~---~v~~~~G~G~~l~~~~~~~l~~~i~~---vl~~~ 423 (467)
+ ++. +=|+| +.+||+++|+|.|+....+ |.-.... ..... +.|..++..+.++|.++|.+ +++|+
T Consensus 372 i--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~~d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 372 A--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSPVTADALAAALRKTAALFADP 448 (485)
T ss_pred E--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCCCCHHHHHHHHHHHHHHhcCH
Confidence 8 885 34544 6789999998777754322 3211110 01112 35777776689999999987 56664
No 153
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.87 E-value=1.2 Score=38.29 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=54.9
Q ss_pred hCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEE
Q 012277 39 HKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIV 118 (467)
Q Consensus 39 ~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI 118 (467)
++||+|++++........ .|+....+...-.. ...... ....+........ ...+.+.+|+++...||+||
T Consensus 1 q~gh~v~fl~~~~~~~~~------~GV~~~~y~~~~~~-~~~~~~-~~~~~e~~~~rg~-av~~a~~~L~~~Gf~PDvI~ 71 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------PGVRVVRYRPPRGP-TPGTHP-YVRDFEAAVLRGQ-AVARAARQLRAQGFVPDVII 71 (171)
T ss_pred CCCCEEEEEecCCCCCCC------CCcEEEEeCCCCCC-CCCCCc-ccccHHHHHHHHH-HHHHHHHHHHHcCCCCCEEE
Confidence 479999999954433322 47777777642211 111111 1111111111122 33345555665556679999
Q ss_pred ECCchhhHHHHHHHc-CCCceeeecc
Q 012277 119 YDSILLWALDVAKKF-GLLGAPFLTQ 143 (467)
Q Consensus 119 ~D~~~~~~~~~A~~~-giP~v~~~~~ 143 (467)
...-+-.+.-+-+.+ +.|.+.+.-.
T Consensus 72 ~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 72 AHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred EcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 998776677778888 9999987543
No 154
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.88 E-value=0.87 Score=36.54 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
||++.+.++-.|.....-++..|.++|++|.++......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 588999999999999999999999999999888765443
No 155
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.59 E-value=0.92 Score=38.57 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=26.0
Q ss_pred CCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 23 GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 23 ~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
..|=-.-+..|+++|+++||+|++++.........
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~ 45 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE 45 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh
Confidence 44677789999999999999999998865544433
No 156
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.08 E-value=0.87 Score=42.21 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=60.8
Q ss_pred CcEEEE-eccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhh--HHHHHHhHhccccccCCcCHHHHH
Q 012277 337 HKSLVV-SWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQST--NAKYILDVWKTGLKFPIVKRDAIA 413 (467)
Q Consensus 337 ~~v~~~-~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~l~ 413 (467)
+|-.+. .|-.+.++|.++++ .|--.|- .+-+++-.|||+|.+|-.+-|+. .|.|=.+++|+...+-+-.+..-.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~ 370 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAA 370 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHH
Confidence 344433 56566677777777 5544432 23456789999999999998875 677777776777666544444445
Q ss_pred HHHHHHhcCcchHHHHHHHH
Q 012277 414 DCISEILEGERGKELRRNAG 433 (467)
Q Consensus 414 ~~i~~vl~~~~~~~~~~~a~ 433 (467)
.+..++|.|+ ++-++++
T Consensus 371 ~~~q~ll~dp---~r~~air 387 (412)
T COG4370 371 QAVQELLGDP---QRLTAIR 387 (412)
T ss_pred HHHHHHhcCh---HHHHHHH
Confidence 5566699998 6666665
No 157
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=91.03 E-value=1.8 Score=40.40 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhC-CCcEEEEEeCCccCcCCccccccc-cCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHhC
Q 012277 298 EMEELAWGLKSS-DQHFLWVVRESEQAKLPKKFSDET-LTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLG 375 (467)
Q Consensus 298 ~~~~~~~al~~~-~~~~i~~~~~~~~~~l~~~~~~~~-~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~G 375 (467)
+...+..+.+.. +.+++++.++........++.+.. .....+.+.+-++-.+++.+|+. |||-.+ ++-.||+.+|
T Consensus 142 ~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~g 218 (269)
T PF05159_consen 142 FLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHG 218 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcC
Confidence 333344445544 567777765532222222222221 02233444567788899999999 888854 5889999999
Q ss_pred CCeeecCC
Q 012277 376 VPMVAMPQ 383 (467)
Q Consensus 376 vP~v~~P~ 383 (467)
+|++++..
T Consensus 219 kpVi~~G~ 226 (269)
T PF05159_consen 219 KPVIVFGR 226 (269)
T ss_pred CceEEecC
Confidence 99999764
No 158
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=90.75 E-value=13 Score=33.93 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
+++|+++-.. ++ ...|++.|...++.+++.+.-.+-..... ..+- ..+..
T Consensus 2 ~~~ilvlGGT--~D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~---~~~~--~~~~G-------------------- 51 (257)
T COG2099 2 MMRILLLGGT--SD---ARALAKKLAAAPVDIILSSLTGYGAKLAE---QIGP--VRVGG-------------------- 51 (257)
T ss_pred CceEEEEecc--HH---HHHHHHHhhccCccEEEEEcccccccchh---ccCC--eeecC--------------------
Confidence 4567766443 33 47899999999987777776555544431 1110 11111
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCchhh-------HHHHHHHcCCCceee
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLW-------ALDVAKKFGLLGAPF 140 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~-------~~~~A~~~giP~v~~ 140 (467)
....+.+.+++++. ..|+|| |...++ +..+|+..|||++.+
T Consensus 52 -~l~~e~l~~~l~e~-----~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 52 -FLGAEGLAAFLREE-----GIDLLI-DATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred -cCCHHHHHHHHHHc-----CCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 11223455555553 366655 545444 467789999999986
No 159
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=90.21 E-value=1.2 Score=45.36 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=64.1
Q ss_pred EEeccchH---hhhcccccceeee---cCCh-hhHHHHHHhCCC----eeecCCccchhhHHHHHHhHhccccccCCcCH
Q 012277 341 VVSWCPQL---EVLAHEATGCFVT---HCGW-NSTMEALSLGVP----MVAMPQWSDQSTNAKYILDVWKTGLKFPIVKR 409 (467)
Q Consensus 341 ~~~~~p~~---~lL~~~~~~~~I~---HGG~-~t~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 409 (467)
+.+++++. .++..+|+ +|. +-|+ .++.||+++|+| +|+.-..+ .+.. . .-|..++.-+.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~~---~-~~g~lv~p~d~ 414 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAEE---L-SGALLVNPYDI 414 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chhh---c-CCCEEECCCCH
Confidence 34677766 56889999 774 3455 477999999999 44432222 1111 3 34666666689
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 012277 410 DAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASL 460 (467)
Q Consensus 410 ~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l 460 (467)
++++++|.++++++. ++.+++.++..+.+. .-+...-+++++++|
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 999999999998751 123333333333333 244566667777665
No 160
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.96 E-value=4.3 Score=40.83 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHhhCC-CcEEEEEeCCccCcCCccccccccCCCcEEEE-eccchH--hhhcccc
Q 012277 280 KESVVYVSYGSFVELKAEEMEELAWGLKSSD-QHFLWVVRESEQAKLPKKFSDETLTSHKSLVV-SWCPQL--EVLAHEA 355 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~-~~~p~~--~lL~~~~ 355 (467)
.+.++++| +.+.+..+....++++ ..+-+..+.. ..+.+.+.... +|+.+. ++.+++ +++..|+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~d 349 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----MSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCD 349 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----ccHHHHHHHhc-CCcEEECCcChHHHHHHHHhcc
Confidence 44567775 2566666666666665 3444322221 11222111003 666665 677733 9999999
Q ss_pred cceeeecCCh--hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHHHH
Q 012277 356 TGCFVTHCGW--NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAG 433 (467)
Q Consensus 356 ~~~~I~HGG~--~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~ 433 (467)
+=+-|+||.. .++.||+.+|+|++..-...-. ...+.. |.....-+.+++.++|.++|.++ +.++++..
T Consensus 350 lyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~----g~l~~~~~~~~m~~~i~~lL~d~--~~~~~~~~ 420 (438)
T TIGR02919 350 IYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS----ENIFEHNEVDQLISKLKDLLNDP--NQFRELLE 420 (438)
T ss_pred EEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC----CceecCCCHHHHHHHHHHHhcCH--HHHHHHHH
Confidence 9888899774 7999999999999986543211 111111 33344447899999999999987 24555544
Q ss_pred HHHHH
Q 012277 434 KWRKL 438 (467)
Q Consensus 434 ~l~~~ 438 (467)
+-++.
T Consensus 421 ~q~~~ 425 (438)
T TIGR02919 421 QQREH 425 (438)
T ss_pred HHHHH
Confidence 43333
No 161
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.91 E-value=1.3 Score=36.69 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=40.3
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
+++.+|++.+.++-+|-.-..-++..|..+|++|++++.....+.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 3567999999999999999999999999999999999987655544
No 162
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=19 Score=34.43 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=81.8
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhC---------CC-cEEEEEeCCccCcCCcccccccc--CCCcEEEE-ecc
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSS---------DQ-HFLWVVRESEQAKLPKKFSDETL--TSHKSLVV-SWC 345 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~---------~~-~~i~~~~~~~~~~l~~~~~~~~~--~~~~v~~~-~~~ 345 (467)
+++|.+++|.-|.. +.+.+..+++||... +. +++.++.+. +++.+.+..... .=.+|.+. .|+
T Consensus 252 ~~~pallvsSTswT--pDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK--GPlkE~Y~~~I~~~~~~~v~~~tpWL 327 (444)
T KOG2941|consen 252 PERPALLVSSTSWT--PDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK--GPLKEKYSQEIHEKNLQHVQVCTPWL 327 (444)
T ss_pred cCCCeEEEecCCCC--CcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC--CchhHHHHHHHHHhcccceeeeeccc
Confidence 45777888765554 456677777777622 11 455555443 455555543311 11345443 787
Q ss_pred ---chHhhhcccccceeeecCChh-----hHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHH
Q 012277 346 ---PQLEVLAHEATGCFVTHCGWN-----STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCIS 417 (467)
Q Consensus 346 ---p~~~lL~~~~~~~~I~HGG~~-----t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~ 417 (467)
++-.+|+.+|++...|-...| -+..-.-+|+|+..+-+. -.-..|++- .-|.... +.++|++.+.
T Consensus 328 ~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk----cl~ELVkh~-eNGlvF~--Ds~eLa~ql~ 400 (444)
T KOG2941|consen 328 EAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK----CLDELVKHG-ENGLVFE--DSEELAEQLQ 400 (444)
T ss_pred ccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch----hHHHHHhcC-CCceEec--cHHHHHHHHH
Confidence 455899999998888876655 344556678888775432 222334444 4566664 6899999999
Q ss_pred HHhcC
Q 012277 418 EILEG 422 (467)
Q Consensus 418 ~vl~~ 422 (467)
.++.|
T Consensus 401 ~lf~~ 405 (444)
T KOG2941|consen 401 MLFKN 405 (444)
T ss_pred HHHhc
Confidence 99873
No 163
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.68 E-value=2.2 Score=36.68 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=58.1
Q ss_pred EcCCCCcChHHHHHHHHHH-HhC-CCEEEEEeCccccccc-----cCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 19 LTYPGQGHINPLLQFSRRL-QHK-GIKVTLVTTRFFYKSL-----HRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L-~~r-Gh~V~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
+..++.||..-++.|.+.+ .++ .++..+++........ ++.. ...-.+..++..... ...+...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~-~~~~~~~~~~r~r~v--------~q~~~~~ 73 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS-SKRHKILEIPRAREV--------GQSYLTS 73 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc-cccceeeccceEEEe--------chhhHhh
Confidence 3456889999999999999 333 5666666655443332 1000 000123333321110 0111112
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCch--hhHHHHHHHc------CCCceeeecc
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKF------GLLGAPFLTQ 143 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~--~~~~~~A~~~------giP~v~~~~~ 143 (467)
.+......+..+ ..+.+ .+||+||+..-. ...+.+|..+ |.+.|.+-+.
T Consensus 74 ~~~~l~~~~~~~-~il~r--~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 74 IFTTLRAFLQSL-RILRR--ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHHHHHHH-HHHHH--hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 222111111111 11221 226999999554 5578888999 9999987653
No 164
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.67 E-value=8.8 Score=35.39 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-CCCCcceEecCCCCCCCCCCCccCHHHHHH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
++||||+..--|. |.--+..|+++|.+.| +|+++.+...+.-.-++. -...+.+..+...-....+.-.+++.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPa---- 77 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPV---- 77 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHH----
Confidence 3579887654433 4456778899998878 798888876554433110 01223333332100000011112221
Q ss_pred HHHHhCchhHHHHHHHhcCCCCCccEEEECCc-------------hhhHHHHHHHcCCCceeeec
Q 012277 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 91 ~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~ 142 (467)
.+... .+ ..+.. .+||+||+..- +..|+.-|..+|||.|.+|.
T Consensus 78 DCV~l---al----~~~~~--~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 78 DCIKV---AL----SHILP--EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHH---HH----HhhcC--CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 11111 11 22221 23699998743 23356667888999999875
No 165
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=89.52 E-value=0.95 Score=46.49 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=48.4
Q ss_pred chHhhhcccccceeee---cCCh-hhHHHHHHhCCCeeecCCcc-chhhHHHHHHhHhc--cccccC-------CcCHHH
Q 012277 346 PQLEVLAHEATGCFVT---HCGW-NSTMEALSLGVPMVAMPQWS-DQSTNAKYILDVWK--TGLKFP-------IVKRDA 411 (467)
Q Consensus 346 p~~~lL~~~~~~~~I~---HGG~-~t~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G--~G~~l~-------~~~~~~ 411 (467)
+..++++.|++ +|. +=|+ -++.||+++|+|+|+....+ .... ..+... + .|..+. .-+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHH
Confidence 56788999999 777 4454 48999999999999976532 2222 112221 2 355443 345688
Q ss_pred HHHHHHHHhcCc
Q 012277 412 IADCISEILEGE 423 (467)
Q Consensus 412 l~~~i~~vl~~~ 423 (467)
|.+++.++++.+
T Consensus 542 La~~m~~~~~~~ 553 (590)
T cd03793 542 LTQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHHhCCc
Confidence 888888888654
No 166
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=89.34 E-value=7.3 Score=35.69 Aligned_cols=114 Identities=12% Similarity=0.032 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-CCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
||||+.---| =|.--..+|+++|.+.| +|+++.+...+.-.-++. -...+.+..++..-....+...+++. .+
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPa----Dc 74 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPT----DC 74 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHH----HH
Confidence 5777654433 24456778899999888 899998877655443211 11234444433100000111112221 11
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCc-------------hhhHHHHHHHcCCCceeeec
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~ 142 (467)
... .+ ..+.. .+||+||+..- +..|+.-|..+|||.|.+|.
T Consensus 75 v~~---gl----~~l~~--~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 75 VIL---GI----NELMP--EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHH---HH----HHhcc--CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 111 11 12221 33699998743 23356667888999999875
No 167
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=89.18 E-value=0.77 Score=43.75 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=32.9
Q ss_pred cEEEEEcC-CCCcChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 012277 14 AHCLVLTY-PGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (467)
Q Consensus 14 ~~il~~~~-~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (467)
||++|+.. ||-|-..-..++|-.++++|++|.+++++..+.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 57775554 566999999999999999999999999987654
No 168
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=89.08 E-value=1.4 Score=47.87 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=67.9
Q ss_pred ccchH---hhhcccccceeeecC---Chh-hHHHHHHhCCC---eeecCCccchhhHHHHHHhHhc-cccccCCcCHHHH
Q 012277 344 WCPQL---EVLAHEATGCFVTHC---GWN-STMEALSLGVP---MVAMPQWSDQSTNAKYILDVWK-TGLKFPIVKRDAI 412 (467)
Q Consensus 344 ~~p~~---~lL~~~~~~~~I~HG---G~~-t~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~l 412 (467)
++|.. .++..+|+ ++.-. |+| +..||+++|+| +++++-+. ..+.. + | -|+.++..+.+++
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~---l-~~~allVnP~D~~~l 433 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS---L-GAGALLVNPWNITEV 433 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh---h-cCCeEEECCCCHHHH
Confidence 45544 67888998 88654 775 77899999999 44544221 12221 3 4 4667777789999
Q ss_pred HHHHHHHhc-CcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012277 413 ADCISEILE-GERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 413 ~~~i~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 463 (467)
+++|.++|. ++ ++-+++.+++.+...+ -+...-.++|++.|...
T Consensus 434 A~AI~~aL~m~~--~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 434 SSAIKEALNMSD--EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHHHhCCH--HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 999999998 43 2445555555555553 34456677777777654
No 169
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.99 E-value=3.2 Score=39.71 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=67.6
Q ss_pred CcEEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 13 LAHCLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 13 ~~~il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
++||++++.= |-|-..-.-++|-.|++.|.+|.+++++..+....--.-.-|-.-..+++++.-..++....+..++..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~ 80 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDE 80 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHH
Confidence 3588866654 559988888899999999999999988775544320000001111222233322233333333334333
Q ss_pred HHHhCch-------------------------hHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCcee
Q 012277 92 FWQIGPQ-------------------------TLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAP 139 (467)
Q Consensus 92 ~~~~~~~-------------------------~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~ 139 (467)
+...... .+..+.+-+.+ ..||+||.|- +.....-+.+++|-+.
T Consensus 81 v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~--~~yD~IV~Dt--aPTG~TLRlL~lP~~~ 149 (322)
T COG0003 81 VKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVS--GEYDVIVVDT--APTGHTLRLLSLPEVL 149 (322)
T ss_pred HHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhc--cCCCEEEEcC--CChHHHHHHhccHHHH
Confidence 3221110 11222222222 4489999993 3467778888999654
No 170
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.92 E-value=0.53 Score=39.56 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=44.0
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCC
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISD 72 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 72 (467)
+|||.+.-.||.|-..-++.+++.|.++|++|-=+-+++-.+--. ..||..+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGk----R~GF~Ivdl~t 60 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGK----RIGFKIVDLAT 60 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCe----EeeeEEEEccC
Confidence 689999999999999999999999999999996555544443322 46777777763
No 171
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=88.42 E-value=9.6 Score=35.07 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
||||+.---|. |.--+..|+++|.+ +|+|+++.+...+.-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 57777655444 33347888999964 7899999887655443
No 172
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.64 E-value=4.7 Score=37.31 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
|||+++...+. -..|++.|.++||+|+..+...+....
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~ 38 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHL 38 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCcccc
Confidence 47777655443 568899999999999988877655433
No 173
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.13 E-value=14 Score=34.07 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
||||+..--|. |.--..+|+++|+ ++|+|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCccc
Confidence 57777665444 4455778889996 46899999887655444
No 174
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.13 E-value=1.1 Score=35.84 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCc---ChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 14 AHCLVLTYPGQG---HINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 14 ~~il~~~~~~~G---H~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
|||+|+.-+-.+ .-.-+++|+.+-++|||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 688888877554 4568899999999999999999987543
No 175
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=86.70 E-value=3.6 Score=36.57 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=33.7
Q ss_pred cEEEEEcCC--CCcChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 012277 14 AHCLVLTYP--GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (467)
Q Consensus 14 ~~il~~~~~--~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (467)
.+|.++++| |-|-..-.-+|+-+|+.+|++|.++-.+--..
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLR 44 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLR 44 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCch
Confidence 468877776 44899999999999999999999988775433
No 176
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=85.54 E-value=7.1 Score=35.67 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
||||+..--| =|.--..+|+++|. .+++|+++.+...+.-+-
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s 42 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGAS 42 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccc
Confidence 5676654322 35666778889998 999999999987665543
No 177
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=85.41 E-value=20 Score=33.26 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
||||+..--|. |.--+..|+++|...| +|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 47776655444 5567888999998887 79888887654433
No 178
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.27 E-value=1 Score=36.75 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
|||++...|+.+=.. ...+.+.|.++|++|.++.++.....+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~ 43 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVT 43 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhh
Confidence 589887777766555 9999999999999999999998887776
No 179
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=84.63 E-value=7 Score=36.92 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHh-
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL- 374 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~- 374 (467)
.+.+..+.+.|++.+..+.+..... ..... .+ ....+..++-..+++ +|+-||-||+.+|+..
T Consensus 20 ~e~~~~i~~~L~~~g~~v~v~~~~~--~~~~~---------~~---~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~ 83 (291)
T PRK02155 20 AEPLESLAAFLAKRGFEVVFEADTA--RNIGL---------TG---YPALTPEEIGARADL--AVVLGGDGTMLGIGRQL 83 (291)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcCc---------cc---ccccChhHhccCCCE--EEEECCcHHHHHHHHHh
Confidence 4556777777887787766543211 10000 00 000122333345788 9999999999999874
Q ss_pred ---CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 375 ---GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 375 ---GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
++|++.+-.. .+|... +.+.+++.++|.+++++
T Consensus 84 ~~~~~pilGIn~G--------------~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 84 APYGVPLIGINHG--------------RLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCCCEEEEcCC--------------Cccccc-cCCHHHHHHHHHHHHcC
Confidence 6787766410 112111 56778888888888876
No 180
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.08 E-value=21 Score=32.79 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCC-CCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
||||+.---|. |.--+..|+++|.+. |+|+++.+...+.-.-++. -...+.+..+..+ .+.-.+++. .+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~----~~~v~GTPa----Dc 70 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG----FYAVDGTPT----DC 70 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC----eEEECCcHH----HH
Confidence 57777654443 455578889999888 7999998876554443210 0122333333210 111111211 11
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCc-------------hhhHHHHHHHcCCCceeeec
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI-------------LLWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~-------------~~~~~~~A~~~giP~v~~~~ 142 (467)
.. --++.+.. .+||+||+..- +..|+.-|..+|||.|.+|.
T Consensus 71 V~-------~gl~~l~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 71 VH-------LALNGLLD--PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HH-------HHHHhhcc--CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 11 11122222 24699998743 23356667888999999875
No 181
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=84.03 E-value=5.8 Score=35.21 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=63.8
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
+..||++.+.++-.|-....-++..|.++|++|++++.....+.+.+.....+..++.+.-....
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~--------------- 145 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTT--------------- 145 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc---------------
Confidence 35689999999999999999999999999999999886654443321111233444444321211
Q ss_pred HHHhCchhHHHHHHHhcCCCC--CccEEEECCchhhHHHHHHHcCCC
Q 012277 92 FWQIGPQTLTELVEKMNGSDS--PVDCIVYDSILLWALDVAKKFGLL 136 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~--~~DlVI~D~~~~~~~~~A~~~giP 136 (467)
....+.++++.+++... .+-+++..... ....++.+|.=
T Consensus 146 ----~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~--~~~~~~~~GaD 186 (201)
T cd02070 146 ----TMGGMKEVIEALKEAGLRDKVKVMVGGAPV--NQEFADEIGAD 186 (201)
T ss_pred ----cHHHHHHHHHHHHHCCCCcCCeEEEECCcC--CHHHHHHcCCc
Confidence 11234555566654432 34566666543 23577777754
No 182
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=83.98 E-value=4.5 Score=35.66 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=64.2
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCccccccc-cCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHH
Q 012277 25 GHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL-HRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTEL 103 (467)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (467)
-++.....+.+.+.++|-+|.|+++......+ ++.....+ ...+...+-...++...........+.......+...
T Consensus 40 ~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~--~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~ 117 (193)
T cd01425 40 EKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG--SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKN 117 (193)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC--CeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666778888889999999998544333 21111112 2222233444234444333333333322221233333
Q ss_pred HHHhcCCCCCccEEEECCch--hhHHHHHHHcCCCceeeeccc
Q 012277 104 VEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 104 i~~l~~~~~~~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~ 144 (467)
+..+......||+||.-... ..+..=|..+|||.|.+.-+.
T Consensus 118 ~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 118 LGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 33333333456888765433 456677999999999987665
No 183
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=83.86 E-value=5.8 Score=42.90 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=67.9
Q ss_pred EEEeccchH---hhhcccccceeeecC---Ch-hhHHHHHHhCCC---eeecCCccchhhHHHHHHhHhccccccCCcCH
Q 012277 340 LVVSWCPQL---EVLAHEATGCFVTHC---GW-NSTMEALSLGVP---MVAMPQWSDQSTNAKYILDVWKTGLKFPIVKR 409 (467)
Q Consensus 340 ~~~~~~p~~---~lL~~~~~~~~I~HG---G~-~t~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 409 (467)
++.+++++. .+++.+|+ ++.-. |+ .++.||+++|+| ++++.... . -..++ .-|..++..+.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~---G---~~~~l-~~~llv~P~d~ 415 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA---G---AAAEL-AEALLVNPNDI 415 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEeccc---c---hhHHh-CcCeEECCCCH
Confidence 455778877 57778888 77642 54 588999999775 23332111 1 12233 33666666689
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012277 410 DAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 410 ~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 463 (467)
++++++|.++|..++ ++-+++.+++.+.+.. -+...-++.+++.|.+.
T Consensus 416 ~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 416 EGIAAAIKRALEMPE-EEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 999999999998641 1444444555444432 44566677777777654
No 184
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=83.29 E-value=1.6 Score=40.07 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=57.1
Q ss_pred CCCceEEEeecccc---cCCHHHHHHHHHHHhhCCCcEEEEEeCCcc-CcCCccccccccCCC-cEEEEec--cch-Hhh
Q 012277 279 AKESVVYVSYGSFV---ELKAEEMEELAWGLKSSDQHFLWVVRESEQ-AKLPKKFSDETLTSH-KSLVVSW--CPQ-LEV 350 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-~~l~~~~~~~~~~~~-~v~~~~~--~p~-~~l 350 (467)
.+++.|.+..|+.. ..+.+.+.++++.|.+.+.++++..+..+. ....+.+.+. .+. .+.+.+- +.+ ..+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAG--LQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTT--HTTTTEEETTTS-HHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHh--cccceEeecCCCCHHHHHHH
Confidence 35678888888865 458899999999999888776655544321 1111111111 122 2333332 233 388
Q ss_pred hcccccceeeecCChhhHHHHHHhCCCeeec
Q 012277 351 LAHEATGCFVTHCGWNSTMEALSLGVPMVAM 381 (467)
Q Consensus 351 L~~~~~~~~I~HGG~~t~~eal~~GvP~v~~ 381 (467)
+.++++ +|+. --|.++=|.+.|+|+|++
T Consensus 181 i~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 181 ISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 889998 8887 568899999999999997
No 185
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=82.22 E-value=41 Score=30.96 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=30.3
Q ss_pred eccchHhhhcccccceeeecCC-hhhHHHHHHhCCCeeec
Q 012277 343 SWCPQLEVLAHEATGCFVTHCG-WNSTMEALSLGVPMVAM 381 (467)
Q Consensus 343 ~~~p~~~lL~~~~~~~~I~HGG-~~t~~eal~~GvP~v~~ 381 (467)
++=|+-++|+.+|. +|.-.. .+.+.||.+.|+|+.++
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 45689999998887 665554 68999999999999773
No 186
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.20 E-value=10 Score=35.79 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=40.1
Q ss_pred hhhcccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 349 EVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 349 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
++...+|+ +|+-||-||+..|+.. ++|++.+-... + |. +.+++.+++.+++++++++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~-----------l---GF-Lt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH-----------L---GF-LTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC-----------c---cc-CCcCCHHHHHHHHHHHHcC
Confidence 34446788 9999999999988763 67887764211 1 22 2256778888888888876
No 187
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=80.05 E-value=7 Score=35.96 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
||||++...+-| ..|++.|.++|+ |.+-+.-.+.....
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~ 38 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELL 38 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhh
Confidence 688888776665 478999999999 66554444444443
No 188
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=79.64 E-value=9 Score=33.88 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
+..+|++.+.++-.|-....-++..|..+|++|++++.....+.+.+.....+..++.+.-....
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~--------------- 147 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTT--------------- 147 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcccccc---------------
Confidence 34689999999999999999999999999999999998766555432111334444444322221
Q ss_pred HHHhCchhHHHHHHHhcCCCC--CccEEEECCchhhHHHHHHHcCCC
Q 012277 92 FWQIGPQTLTELVEKMNGSDS--PVDCIVYDSILLWALDVAKKFGLL 136 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~--~~DlVI~D~~~~~~~~~A~~~giP 136 (467)
....+.++++.+++... .+-++|..... ....|+.+|.=
T Consensus 148 ----~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad 188 (197)
T TIGR02370 148 ----TMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGAD 188 (197)
T ss_pred ----CHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence 11223455555554422 24566766444 34566666543
No 189
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=78.58 E-value=2.7 Score=36.94 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
+.+||++...|+.|=+.-...+++.|.++||+|.++.++...+.+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 4668887766655544447899999999999999999988665543
No 190
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=78.38 E-value=13 Score=29.90 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
||++.+.++-.|-....-++..|..+|++|.+.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999986544433
No 191
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=78.19 E-value=12 Score=37.91 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=61.3
Q ss_pred cEEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 14 AHCLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 14 ~~il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
.+|+|.... +.|-..-+..|++.|+++|++|..+-.... .+. -.++..-.+.+...++..
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd--~~d-------~~~~~~~~g~~~~~ld~~---------- 64 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD--YID-------PAYHTAATGRPSRNLDSW---------- 64 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC--ccc-------HHHHHHHhCCCcccCCce----------
Confidence 356665444 458999999999999999999988866311 110 000000001110011100
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCc------------hhhHHHHHHHcCCCceeeeccc
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSI------------LLWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~------------~~~~~~~A~~~giP~v~~~~~~ 144 (467)
......+.+.++.+. ..+|++|.+-. ....+.+|+.++.|+|.+....
T Consensus 65 -~~~~~~v~~~~~~~~---~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 -MMGEELVRALFARAA---QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred -eCCHHHHHHHHHHhc---ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 001234455555554 33699886432 1336789999999999998644
No 192
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=78.06 E-value=8.3 Score=35.65 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=32.0
Q ss_pred EEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 15 HCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 15 ~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
||+ +..-||.|......++|..++++|++|.++..+..
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 355 45566779999999999999999999999998764
No 193
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=77.48 E-value=2.7 Score=36.21 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=25.8
Q ss_pred cEEEEEcCCCC-cChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 14 AHCLVLTYPGQ-GHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 14 ~~il~~~~~~~-GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
|||.++.-.|. |+ .|+++...|||+||-++....+
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeChHh
Confidence 57876655444 54 4688888999999999986544
No 194
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.27 E-value=60 Score=30.24 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=34.4
Q ss_pred CcEEEEeccchH---hhhcccccceeeecCChhhHHHHHHhCCCee--ecCCc
Q 012277 337 HKSLVVSWCPQL---EVLAHEATGCFVTHCGWNSTMEALSLGVPMV--AMPQW 384 (467)
Q Consensus 337 ~~v~~~~~~p~~---~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v--~~P~~ 384 (467)
-++...+|+||+ .+|--||+ -+-. |--|+--|..+|+|.+ |+|..
T Consensus 238 lrvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHIYpQd 287 (370)
T COG4394 238 LRVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHIYPQD 287 (370)
T ss_pred eEEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEecCCc
Confidence 345566999987 78888887 3333 7889999999999997 46743
No 195
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=77.09 E-value=6.2 Score=29.00 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEE
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLV 47 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~ 47 (467)
.-++++..+...|...+..+|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5677888888899999999999999999999754
No 196
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.72 E-value=18 Score=34.25 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=41.5
Q ss_pred HhhhcccccceeeecCChhhHHHHHH----hCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 348 LEVLAHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 348 ~~lL~~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.++...+|+ +|+=||-||+..|.. .++|++.+-... + |... +++.+++.+++.+++++
T Consensus 63 ~~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-----------l---GFL~-~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 63 TELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQGH-----------L---GFLT-QIPREYMTDKLLPVLEG 124 (296)
T ss_pred hhcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecCC-----------C---eEee-ccCHHHHHHHHHHHHcC
Confidence 344446888 999999999999975 378888775311 2 2111 56788899999998876
No 197
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=76.39 E-value=41 Score=30.30 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCC--cChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 13 LAHCLVLTYPGQ--GHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 13 ~~~il~~~~~~~--GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
+|+.+|++...+ |-..-.-.|+++|+.+|++|.++=+
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECc
Confidence 356677666644 8999999999999999999987653
No 198
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.08 E-value=34 Score=30.01 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=61.2
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc------ccccCCCCCCCcceEecCCCCCCCCCCCccCH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY------KSLHRDSSSSSIPLEAISDGYDEGGYAQAESI 85 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (467)
..-.|.++...+.|-....+.+|-..+.+|++|.++-.=... ..++ ...++.+.....++.. .. ...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~---~l~~v~~~~~g~~~~~---~~-~~~ 93 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE---FGGGVEFHVMGTGFTW---ET-QDR 93 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh---cCCCcEEEECCCCCcc---cC-CCc
Confidence 445788999999999999999999999999999988642211 1112 1246777777755432 11 111
Q ss_pred HHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchh
Q 012277 86 EAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (467)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~ 124 (467)
.. -.......+....+.+.. ..+|+||-|....
T Consensus 94 ~e----~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 94 ER----DIAAAREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred HH----HHHHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11 112222233333333332 5589999998764
No 199
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=76.07 E-value=65 Score=32.95 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=71.2
Q ss_pred EEEEeccchHh---hhcccccceeeec---CChhhH-HHHHHhCC----CeeecCCccchhhHHHHHHhHhccccccCCc
Q 012277 339 SLVVSWCPQLE---VLAHEATGCFVTH---CGWNST-MEALSLGV----PMVAMPQWSDQSTNAKYILDVWKTGLKFPIV 407 (467)
Q Consensus 339 v~~~~~~p~~~---lL~~~~~~~~I~H---GG~~t~-~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 407 (467)
+++.+.+|+.+ ++..+|+ ++.- -|+|.+ .|.++++. |+|.--+.+ | .+.+ .-++.++..
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~~l-~~AllVNP~ 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AVEL-KGALLTNPY 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hhhc-CCCEEECCC
Confidence 45668888775 5667888 6654 488854 59999987 544433221 1 1455 556777777
Q ss_pred CHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 012277 408 KRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLAC 462 (467)
Q Consensus 408 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~ 462 (467)
+.++++++|.+.|..+. ++=+++.+++.+.+++ -.+..=.+.|+++|..
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 89999999999998852 2345555555555553 3445667888888764
No 200
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.02 E-value=20 Score=34.13 Aligned_cols=57 Identities=11% Similarity=0.214 Sum_probs=41.7
Q ss_pred hhhcccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 349 EVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 349 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+...+|+ +|+=||-||+..|... ++|++.+... .+|... +...+++.+++++++++
T Consensus 68 ~~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 68 DAADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA-EAEAEDLDEAVERVVDR 128 (306)
T ss_pred hcccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec-cCCHHHHHHHHHHHHcC
Confidence 33446788 9999999999999764 7888887631 122222 56688888999999876
No 201
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=75.94 E-value=53 Score=30.43 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=56.4
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhC---CCEEEEEeCccccccccCCC-CCCCcceEecCCCCCCCCCCCccCHHHHH
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHK---GIKVTLVTTRFFYKSLHRDS-SSSSIPLEAISDGYDEGGYAQAESIEAYL 89 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~r---Gh~V~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (467)
||||+.---|. |.--+.+|+++|.+. |++|+++.+...+.-.-++. -...+.+..+.++ .+.-.+++..
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~----~yav~GTPaD-- 73 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR----RFAAEGSPAD-- 73 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC----eEEEcCchHH--
Confidence 46666543322 444566677777653 47999998876554443211 0123444333211 1111222221
Q ss_pred HHHHHhCchhHHHHHHHhcCCCCCccEEEECCc----------h---hhHHHHHHHcCCCceeeec
Q 012277 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSI----------L---LWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 90 ~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~----------~---~~~~~~A~~~giP~v~~~~ 142 (467)
+... .+..++ . +.+||+||+..- + ..|+.-|..+|||.|.+|.
T Consensus 74 --CV~l---al~~~~----~-~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 74 --CVLA---ALYDVM----K-DAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred --HHHH---HHHHhc----C-CCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 1111 112222 1 134699998643 2 3355667788999999875
No 202
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=75.48 E-value=2.2 Score=37.30 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCcChHH------------HHHHHHHHHhCCCEEEEEeCcc
Q 012277 13 LAHCLVLTYPGQGHINP------------LLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p------------~l~la~~L~~rGh~V~~~~~~~ 51 (467)
++||||.+.++.=++.| -..||+++..|||+|+++.++.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 34566666555544443 4688999999999999999984
No 203
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.68 E-value=35 Score=28.99 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=55.5
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEE---eCccc---cccccCCCCCCCcceEecCCCCCCCCCCCccCHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLV---TTRFF---YKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAY 88 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~---~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 88 (467)
-|.+++..+.|-....+.+|-..+.+|++|.|+ -+... ...+++ -.++.+.....+... .. .+....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~---l~~v~~~~~g~~~~~---~~-~~~~~~ 76 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER---LPNIEIHRMGRGFFW---TT-ENDEED 76 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh---CCCcEEEECCCCCcc---CC-CChHHH
Confidence 366888889999999999999999999999994 33211 111121 236777776654322 11 111111
Q ss_pred HHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchh
Q 012277 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (467)
Q Consensus 89 ~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~ 124 (467)
. ......++...+.+.. ..+|+||-|....
T Consensus 77 ~----~~a~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 77 I----AAAAEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred H----HHHHHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 1 1112222223233332 4589999998764
No 204
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.42 E-value=6.2 Score=36.68 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=38.1
Q ss_pred ccccceeeecCChhhHHHHHH------hCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 353 HEATGCFVTHCGWNSTMEALS------LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+|+ +|+-||-||+..|+. .++|++.+... .+|..- +.+.+++.+++.+++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc-cCCHHHHHHHHHHHHcC
Confidence 4677 999999999999986 47888876521 112211 55678888888888876
No 205
>PRK05920 aromatic acid decarboxylase; Validated
Probab=73.72 E-value=3.7 Score=36.39 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
+++||++.-.|+.+= .=.+.+.+.|.+.||+|.++.++.....+.
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 357888766655444 688999999999999999999988777664
No 206
>PLN02929 NADH kinase
Probab=73.48 E-value=17 Score=34.44 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHh-
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL- 374 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~- 374 (467)
.+.++.+.+.|++.|..+..+... .+ ......+|+ +|+-||-||+..|.+.
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~v~r~----~~----------------------~~~~~~~Dl--vi~lGGDGT~L~aa~~~ 84 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWECVLRN----EL----------------------SQPIRDVDL--VVAVGGDGTLLQASHFL 84 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEeecc----cc----------------------ccccCCCCE--EEEECCcHHHHHHHHHc
Confidence 456677777888888776332211 01 111235688 9999999999999654
Q ss_pred --CCCeeecCCcc------chhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 375 --GVPMVAMPQWS------DQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 375 --GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
++|++.+-... +++.|.- .+.+-.|... ..+.+++.++|++++++
T Consensus 85 ~~~iPvlGIN~Gp~~~~~~~~~~~~~--~~~r~lGfL~-~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 85 DDSIPVLGVNSDPTQKDEVEEYSDEF--DARRSTGHLC-AATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCCcEEEEECCCccccccccccccc--ccccCccccc-cCCHHHHHHHHHHHHcC
Confidence 68988875532 1222221 1110234333 46689999999999987
No 207
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=73.18 E-value=55 Score=27.47 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=71.6
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeec
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTH 362 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~H 362 (467)
.|-|-+||.+ +....+++...|+++|..+-+.+.+.+. .|+.+. .|+...+- ..+++ ||.=
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR--~p~~l~------------~~~~~~~~-~~~~v--iIa~ 62 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR--TPERLL------------EFVKEYEA-RGADV--IIAV 62 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT--SHHHHH------------HHHHHTTT-TTESE--EEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--CHHHHH------------HHHHHhcc-CCCEE--EEEE
Confidence 4677778876 4778899999999999776655544432 223221 11111111 23556 8888
Q ss_pred CChh----hHHHHHHhCCCeeecCCccchhhHHHH---HHhH-hccccccCCc-CHHHHHHHHHHHh--cCcchHHHHHH
Q 012277 363 CGWN----STMEALSLGVPMVAMPQWSDQSTNAKY---ILDV-WKTGLKFPIV-KRDAIADCISEIL--EGERGKELRRN 431 (467)
Q Consensus 363 GG~~----t~~eal~~GvP~v~~P~~~DQ~~na~~---v~~~-~G~G~~l~~~-~~~~l~~~i~~vl--~~~~~~~~~~~ 431 (467)
.|.. ++.-++. -+|++.+|....+.....- +.++ -|++...-.. +...-+-.-.++| .|+ +++++
T Consensus 63 AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~---~l~~k 138 (150)
T PF00731_consen 63 AGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDP---ELREK 138 (150)
T ss_dssp EESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-H---HHHHH
T ss_pred CCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCH---HHHHH
Confidence 7754 4444444 7999999988775543332 3333 2333222111 2222222234444 344 78888
Q ss_pred HHHHHHHHHH
Q 012277 432 AGKWRKLAKE 441 (467)
Q Consensus 432 a~~l~~~~~~ 441 (467)
.+..++++++
T Consensus 139 l~~~~~~~~~ 148 (150)
T PF00731_consen 139 LRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888887764
No 208
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=73.04 E-value=29 Score=33.47 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=56.5
Q ss_pred CHHHHHHHHH-HHhhC-CCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH---hhhcccccceeeecCC----h
Q 012277 295 KAEEMEELAW-GLKSS-DQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL---EVLAHEATGCFVTHCG----W 365 (467)
Q Consensus 295 ~~~~~~~~~~-al~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~---~lL~~~~~~~~I~HGG----~ 365 (467)
..+++.+++. .+.+. ..+|++...++. ...-++.++++.+-+++.+.+-+|++ ++|.+-++ |++-.= .
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc 285 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFC 285 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHH
Confidence 4566666554 44544 457665543332 22334555555578999999999987 77888888 887542 2
Q ss_pred hhHHHHHHhCCCeeec
Q 012277 366 NSTMEALSLGVPMVAM 381 (467)
Q Consensus 366 ~t~~eal~~GvP~v~~ 381 (467)
-++.||..+|.|+|..
T Consensus 286 ~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 286 MVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 3678999999999873
No 209
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=72.17 E-value=30 Score=29.84 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=56.6
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEE---eCcc-c--cccccCCCCCCCcceEecCCCCCCCCCCCccCHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLV---TTRF-F--YKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAY 88 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~---~~~~-~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 88 (467)
-|.++...+.|-....+.+|-..+.+|++|.++ -+.. . ...++ ..++.+.....++.. .. .+...-
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~----~~~~~~~~~g~g~~~-~~---~~~~~~ 78 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFE----PHGVEFQVMGTGFTW-ET---QNREAD 78 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHH----hcCcEEEECCCCCee-cC---CCcHHH
Confidence 466888889999999999999999999999655 3321 1 11222 236777777765432 11 111111
Q ss_pred HHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchh
Q 012277 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (467)
Q Consensus 89 ~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~ 124 (467)
. ......+....+.+.. ..+|+||-|....
T Consensus 79 ~----~~~~~~~~~a~~~l~~--~~~DlvVLDEi~~ 108 (173)
T TIGR00708 79 T----AIAKAAWQHAKEMLAD--PELDLVLLDELTY 108 (173)
T ss_pred H----HHHHHHHHHHHHHHhc--CCCCEEEehhhHH
Confidence 1 1122233333333332 4589999998663
No 210
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=71.66 E-value=27 Score=26.16 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHHhcC
Q 012277 30 LLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNG 109 (467)
Q Consensus 30 ~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ 109 (467)
++.+++.|.+.|++| +++... ...++ ..|+.+......... + . ..+++.+..
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~gT-a~~L~----~~Gi~~~~~~~ki~~-~-----~----------------~~i~~~i~~ 53 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGGT-AKFLR----EAGLPVKTLHPKVHG-G-----I----------------LAILDLIKN 53 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccHH-HHHHH----HCCCcceeccCCCCC-C-----C----------------HHHHHHhcC
Confidence 468899999999999 466654 45555 467766322211111 0 0 024444443
Q ss_pred CCCCccEEEECCch---------hhHHHHHHHcCCCce
Q 012277 110 SDSPVDCIVYDSIL---------LWALDVAKKFGLLGA 138 (467)
Q Consensus 110 ~~~~~DlVI~D~~~---------~~~~~~A~~~giP~v 138 (467)
.++|+||..+.. ..-..+|...+||++
T Consensus 54 --g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 54 --GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred --CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 558999986431 224556888899975
No 211
>PRK05973 replicative DNA helicase; Provisional
Probab=71.63 E-value=12 Score=34.11 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=35.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
+++...+|.|-..=.+.++..-+++|+.|.|++.+...+.+.
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~ 108 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVR 108 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHH
Confidence 567778899999999999998888999999999887665443
No 212
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=71.30 E-value=57 Score=31.91 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=36.9
Q ss_pred eeecCChhhHHHHHHhCCCeee--cCCccch------hhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCc
Q 012277 359 FVTHCGWNSTMEALSLGVPMVA--MPQWSDQ------STNAKYILDVWKTGLKFPIVKRDAIADCISEILEGE 423 (467)
Q Consensus 359 ~I~HGG~~t~~eal~~GvP~v~--~P~~~DQ------~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~ 423 (467)
|-|+ |..++..|+.+|.|+-. ++...|- ..|+-++.+-.-.... -.+.++|..+|.++++++
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv--vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV--VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE--EeccHHHHHHHHHHHHhh
Confidence 4444 67888999999998733 2333332 1233333332011111 467899999999999886
No 213
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=71.05 E-value=33 Score=29.22 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=23.3
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeecCC
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAMPQ 383 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P~ 383 (467)
++.+ +++|.|-| .+.+|...++|+|++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4555 88988854 78899999999999863
No 214
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=70.63 E-value=5.1 Score=34.92 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
++||++...|+.|=+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 3578887776665554 7899999999999999999988777665
No 215
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=70.62 E-value=19 Score=32.63 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCccccccccCC-CCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHh-------------
Q 012277 30 LLQFSRRLQHKGIKVTLVTTRFFYKSLHRD-SSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQI------------- 95 (467)
Q Consensus 30 ~l~la~~L~~rGh~V~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 95 (467)
.....+...++|-.|.|+++..+.....+. +...|-.+ +...|-...++........++.+...
T Consensus 53 A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g~~y--V~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tK 130 (252)
T COG0052 53 AYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTGAYY--VNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTK 130 (252)
T ss_pred HHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhCCce--ecCcccCccccCchhHHHHHHHHHHHHHHhhcccccccH
Confidence 344455566779999999998766554310 01122222 22334333444444433333333211
Q ss_pred -----CchhHHHHHHHh---cCCCCCccEE-EECCch-hhHHHHHHHcCCCceeeeccc
Q 012277 96 -----GPQTLTELVEKM---NGSDSPVDCI-VYDSIL-LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 96 -----~~~~l~~~i~~l---~~~~~~~DlV-I~D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (467)
.......+.+.+ ++=..-||++ |.|+.. .-|..=|.++|||+|.+.-+.
T Consensus 131 kE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 131 KEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred HHHHHHHHHHHHHHHhhcchhhccCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 011112222222 1111224765 556665 446777999999999987765
No 216
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=70.27 E-value=15 Score=31.19 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCCCcChHHHHHHHHHHHhCCCEEEEE
Q 012277 21 YPGQGHINPLLQFSRRLQHKGIKVTLV 47 (467)
Q Consensus 21 ~~~~GH~~p~l~la~~L~~rGh~V~~~ 47 (467)
.++.|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 345689999999999999999999886
No 217
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=69.90 E-value=40 Score=28.58 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=55.4
Q ss_pred hhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEec-cc
Q 012277 268 TEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSW-CP 346 (467)
Q Consensus 268 ~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-~p 346 (467)
..++-+++.+.+ ...++ |.. .-......++..+.+.+++=+++.... .... ..+.....++ -+
T Consensus 20 A~~lg~~La~~g---~~lv~-Gg~----~GlM~a~a~ga~~~gg~viGVlp~~l~--~~~~------~~~~~i~~~~~~~ 83 (159)
T TIGR00725 20 AYRLGKELAKKG---HILIN-GGR----TGVMEAVSKGAREAGGLVVGILPDEDF--AGNP------YLTIKVKTGMNFA 83 (159)
T ss_pred HHHHHHHHHHCC---CEEEc-CCc----hhHHHHHHHHHHHCCCeEEEECChhhc--cCCC------CceEEEECCCcch
Confidence 356667777632 45555 433 236666777777777777655543211 1110 1111122243 33
Q ss_pred hHhhhc-ccccceeeecCChhhHHH---HHHhCCCeeecCCc
Q 012277 347 QLEVLA-HEATGCFVTHCGWNSTME---ALSLGVPMVAMPQW 384 (467)
Q Consensus 347 ~~~lL~-~~~~~~~I~HGG~~t~~e---al~~GvP~v~~P~~ 384 (467)
-..++. .+| ..++--||.||+.| ++.+++|+++++..
T Consensus 84 Rk~~m~~~sd-a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 84 RNFILVRSAD-VVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HHHHHHHHCC-EEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 344444 455 34566788888765 58899999998753
No 218
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.85 E-value=33 Score=32.48 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHh-
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL- 374 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~- 374 (467)
.+..+++.+.|++.+..+.+.-... ..++. .+ ....+...+-..+++ +|+=||-||+.+++..
T Consensus 19 ~e~~~~i~~~L~~~giev~v~~~~~--~~~~~---------~~---~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~ 82 (295)
T PRK01231 19 VETLRRLKDFLLDRGLEVILDEETA--EVLPG---------HG---LQTVSRKLLGEVCDL--VIVVGGDGSLLGAARAL 82 (295)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcCc---------cc---ccccchhhcccCCCE--EEEEeCcHHHHHHHHHh
Confidence 4566677777877777755432111 11111 00 012222233345788 9999999999999753
Q ss_pred ---CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 375 ---GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 375 ---GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
++|++.+... ++ | .+.+.+.+++.++|++++++
T Consensus 83 ~~~~~Pvlgin~G-----------~l---G-Fl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 83 ARHNVPVLGINRG-----------RL---G-FLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCCCEEEEeCC-----------cc---c-ccccCCHHHHHHHHHHHHcC
Confidence 6788877641 22 3 12256789999999999876
No 219
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=69.62 E-value=9.6 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=23.7
Q ss_pred CccEEEE-CCch-hhHHHHHHHcCCCceeeeccc
Q 012277 113 PVDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 113 ~~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (467)
.||+||. |+.. ..+..=|.++|||+|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 4687766 4444 556777999999999987765
No 220
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.59 E-value=10 Score=36.00 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=41.2
Q ss_pred hhhcccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 349 EVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 349 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+...+|+ +|+=||-||+..|... ++|++.+-.. .+|..- +++.+++.++|++++++
T Consensus 64 ~~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt-~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 64 GFDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT-EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred hcccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc-cCCHHHHHHHHHHHHcC
Confidence 33345788 9999999999999775 7888877421 112111 56788899999998876
No 221
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.51 E-value=11 Score=35.57 Aligned_cols=57 Identities=18% Similarity=0.407 Sum_probs=41.7
Q ss_pred hhhcccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 349 EVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 349 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+...+|+ +|+=||-||++.|+.. ++|++.+-... + |. +.+++.+++.+++++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-----------l---GF-Lt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR-----------L---GF-LATVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC-----------C---Cc-ccccCHHHHHHHHHHHHcC
Confidence 44446788 9999999999999873 78888765311 2 21 2256788899999999877
No 222
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=69.15 E-value=7 Score=33.52 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHh-CCCEEEEEeC
Q 012277 26 HINPLLQFSRRLQH-KGIKVTLVTT 49 (467)
Q Consensus 26 H~~p~l~la~~L~~-rGh~V~~~~~ 49 (467)
|.....+|+++|.+ +|.++.+..-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 78889999999988 5655544433
No 223
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=69.07 E-value=8.5 Score=34.73 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=34.9
Q ss_pred EEEEcC-CCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 16 CLVLTY-PGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 16 il~~~~-~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
|.|++. ||.|-..-.+.||.+|+++|-.|+++=.+.++....
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 335444 466999999999999999999999999998887664
No 224
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=68.97 E-value=1.1e+02 Score=29.19 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=52.3
Q ss_pred CcEEEE-eccchH---hhhcccccceeeec--CChhhHHHHHHhCCCeeecCC-ccchhhHHHHHHhHhccccccC--Cc
Q 012277 337 HKSLVV-SWCPQL---EVLAHEATGCFVTH--CGWNSTMEALSLGVPMVAMPQ-WSDQSTNAKYILDVWKTGLKFP--IV 407 (467)
Q Consensus 337 ~~v~~~-~~~p~~---~lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~G~~l~--~~ 407 (467)
+++.+. +++|.+ .+|++||++-|+|+ =|.||+.-.+..|+|+++--. ..-|. +.+. |+-+..+ .+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fwqd-----l~e~-gv~Vlf~~d~L 279 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFWQD-----LTEQ-GLPVLFTGDDL 279 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchHHH-----HHhC-CCeEEecCCcc
Confidence 677665 677654 88999999777765 489999999999999998532 11232 4444 6666444 77
Q ss_pred CHHHHHHHHHH
Q 012277 408 KRDAIADCISE 418 (467)
Q Consensus 408 ~~~~l~~~i~~ 418 (467)
+...+.++=+.
T Consensus 280 ~~~~v~e~~rq 290 (322)
T PRK02797 280 DEDIVREAQRQ 290 (322)
T ss_pred cHHHHHHHHHH
Confidence 77777665443
No 225
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=68.37 E-value=11 Score=38.20 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=41.6
Q ss_pred CCCcEEEEEcCCCCcChHHH------------HHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecC
Q 012277 11 CKLAHCLVLTYPGQGHINPL------------LQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~------------l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~ 71 (467)
.+++||||...|+.=.+.|. ..||+++..+|++|++++++.... . ..++.++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~--~----p~~v~~i~V~ 320 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA--D----PQGVKVIHVE 320 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC--C----CCCceEEEec
Confidence 56789999998888877765 589999999999999999876321 1 3456555443
No 226
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=67.47 E-value=67 Score=28.03 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecC
Q 012277 29 PLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 29 p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~ 71 (467)
-.-.|+..|+++||+|++.|.....+... ..-.|+++..++
T Consensus 22 ~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~--~~y~gv~l~~i~ 62 (185)
T PF09314_consen 22 FVEELAPRLVSKGIDVTVYCRSDYYPYKE--FEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCC--cccCCeEEEEeC
Confidence 34456677778899999999876654333 224678888887
No 227
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=67.41 E-value=11 Score=34.11 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 18 VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 18 ~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
+++..+.|-+- ..||++|.++||+|+++...
T Consensus 19 ~itN~SSG~iG--~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQLG--KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHHH--HHHHHHHHhCCCEEEEEECc
Confidence 34444444333 56789999999999999754
No 228
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=66.52 E-value=33 Score=30.73 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=26.6
Q ss_pred EEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEe
Q 012277 16 CLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVT 48 (467)
Q Consensus 16 il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (467)
|+|.+.. +.|-..-.+.|++.|.++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4454444 45999999999999999999998865
No 229
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=66.11 E-value=3.2 Score=41.79 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=44.2
Q ss_pred hHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHH---HHHHHHHHHhcCcchHHHHHHHHH
Q 012277 367 STMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRD---AIADCISEILEGERGKELRRNAGK 434 (467)
Q Consensus 367 t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~---~l~~~i~~vl~~~~~~~~~~~a~~ 434 (467)
++.||+++|+|++..- +.+-+.-++.. -.|...+. +++ .+++++.++..|+ +++.+..+
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV~~~-~tG~l~dp-~~e~~~~~a~~~~kl~~~p---~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIVVHG-VTGLLIDP-GQEAVAELADALLKLRRDP---ELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEEEcC-CcceeeCC-chHHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 7899999999999865 55556666666 67777763 444 6999999999998 66555443
No 230
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=66.08 E-value=9 Score=33.51 Aligned_cols=100 Identities=15% Similarity=0.258 Sum_probs=49.4
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCc-cccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTR-FFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
+.+-+...+-|-+....+|+++|.++ |++|.+-++- ...+.+.+. ....+....+|-+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~-~~~~v~~~~~P~D~----------------- 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL-LPDRVDVQYLPLDF----------------- 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG--GGG-SEEE---SS-----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh-CCCCeEEEEeCccC-----------------
Confidence 45545555789999999999999987 8998887762 222223210 01123333344212
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCchhh--HHHHHHHcCCCceeeec
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLW--ALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~--~~~~A~~~giP~v~~~~ 142 (467)
....+..++.++ ||++|.-....| ....|++.|||.+.+..
T Consensus 84 -----~~~~~rfl~~~~-----P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 -----PWAVRRFLDHWR-----PDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----HHHHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----HHHHHHHHHHhC-----CCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 224455666665 688887766655 45567888999998754
No 231
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=13 Score=36.52 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHH
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (467)
=||+---||-|--.=+++++..|+++| +|.|+++++..+.++ ++...+.-..+ .+.-
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik-------lRA~RL~~~~~---------------~l~l 151 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK-------LRADRLGLPTN---------------NLYL 151 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH-------HHHHHhCCCcc---------------ceEE
Confidence 366777778899999999999999999 999999998777665 11111110000 0111
Q ss_pred hCchhHHHHHHHhcCCCCCccEEEECCch-hh--------------------HHHHHHHcCCCceeeecc
Q 012277 95 IGPQTLTELVEKMNGSDSPVDCIVYDSIL-LW--------------------ALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 95 ~~~~~l~~~i~~l~~~~~~~DlVI~D~~~-~~--------------------~~~~A~~~giP~v~~~~~ 143 (467)
...-.++++++.+.. ..||++|.|... .+ ...+|+..|++.+++.+.
T Consensus 152 ~aEt~~e~I~~~l~~--~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 152 LAETNLEDIIAELEQ--EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred ehhcCHHHHHHHHHh--cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 112234455555554 337999999653 11 145688889998887653
No 232
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=65.98 E-value=68 Score=27.20 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=60.3
Q ss_pred EEEcCCCCcChHHHH-HHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCC-ccCHHHHHHHHHH
Q 012277 17 LVLTYPGQGHINPLL-QFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQ-AESIEAYLERFWQ 94 (467)
Q Consensus 17 l~~~~~~~GH~~p~l-~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 94 (467)
..+.+...+.+..++ .+|+.|..+|++|-=++.......-. .........++.+... .... .+.-....+.--.
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~---~~~~m~l~dl~~G~~~-~IsQ~LG~gs~gCrLD~~ 77 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDG---GRCDMDLRDLPSGRRI-RISQDLGPGSRGCRLDPG 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC---CccceEEEECCCCCEE-EEeeccCCCCcccccCHH
Confidence 345555667777665 57999999999998777654222221 1234555555533211 0000 0000000010000
Q ss_pred hCchhHHHHHHHhcCCCCCccEEEECCchh---------hHHHHHHHcCCCceeeeccc
Q 012277 95 IGPQTLTELVEKMNGSDSPVDCIVYDSILL---------WALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 95 ~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~---------~~~~~A~~~giP~v~~~~~~ 144 (467)
........+-..+. .++|++|.+-|.- .....|-..|||+++..+..
T Consensus 78 ~La~A~~~l~~al~---~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 78 ALAEASAALRRALA---EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred HHHHHHHHHHHHHh---cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 11111122223333 3469999997741 12444667799999876543
No 233
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=65.89 E-value=15 Score=35.03 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=31.7
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
++.||.|-.--.+.||+.|++||..+-+++-+.-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 78889999999999999999999999999986544
No 234
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=65.80 E-value=72 Score=29.20 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=28.7
Q ss_pred EEEEEcC-CCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 15 HCLVLTY-PGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 15 ~il~~~~-~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
.|.+.+. ||.|-..-+-+||..|++.|++|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4545444 46699999999999999999999887654
No 235
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=65.42 E-value=24 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
+..||++.+.++-.|-....-++-.|..+|++|++++.....+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 456899999999999999999999999999999999977554444
No 236
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=65.18 E-value=89 Score=29.03 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.0
Q ss_pred CcEEE-EEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 13 LAHCL-VLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 13 ~~~il-~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
..|++ |.+.. +-|--.-...||..|++.|++|.++=.+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 45655 44443 4488888999999999999999988554
No 237
>PRK14098 glycogen synthase; Provisional
Probab=65.02 E-value=11 Score=38.69 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCC------CCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 11 CKLAHCLVLTYP------GQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 11 ~~~~~il~~~~~------~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
+++||||+++.- ..|=-..+-+|.++|+++||+|.++.+.
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 455899987642 2244456778899999999999999984
No 238
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.01 E-value=12 Score=34.96 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=41.4
Q ss_pred chHhhhcccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhc
Q 012277 346 PQLEVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILE 421 (467)
Q Consensus 346 p~~~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~ 421 (467)
++.++...+++ +|+=||-||+..|++. ++|++.+-.. .+|... +++++++.+.+.++++
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~-~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT-DIDPKNAYEQLEACLE 97 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc-cCCHHHHHHHHHHHHh
Confidence 33455556788 9999999999998653 6788776421 122222 4567888888888887
Q ss_pred C
Q 012277 422 G 422 (467)
Q Consensus 422 ~ 422 (467)
+
T Consensus 98 ~ 98 (272)
T PRK02231 98 R 98 (272)
T ss_pred c
Confidence 3
No 239
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=64.70 E-value=5.9 Score=36.44 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (467)
+++|+++...+-| ..|++.|.++|+.|++-+...+..
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~ 38 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG 38 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC
Confidence 4578888776666 468999999999888776655444
No 240
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=64.65 E-value=14 Score=29.37 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
|+++.+.+..-|-.-...++..|.++||+|.++....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7888999999999999999999999999999885443
No 241
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=64.65 E-value=67 Score=28.47 Aligned_cols=146 Identities=12% Similarity=0.011 Sum_probs=77.4
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccce
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGC 358 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~ 358 (467)
.++.++.|..|..+ ...++.|.+.|.++.++... +.+.+.+.. ...++...........+..+++
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~-----~~~~l~~l~-~~~~i~~~~~~~~~~~l~~adl-- 73 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE-----LTENLVKLV-EEGKIRWKQKEFEPSDIVDAFL-- 73 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC-----CCHHHHHHH-hCCCEEEEecCCChhhcCCceE--
Confidence 45667888777654 33456666678777665421 122221110 1134555444444566778888
Q ss_pred eeecCChhhHHHHHH----hCCCeeec--CCccchhhHHHHHHhHhccccccC-----CcCHHHHHHHHHHHhcCcchHH
Q 012277 359 FVTHCGWNSTMEALS----LGVPMVAM--PQWSDQSTNAKYILDVWKTGLKFP-----IVKRDAIADCISEILEGERGKE 427 (467)
Q Consensus 359 ~I~HGG~~t~~eal~----~GvP~v~~--P~~~DQ~~na~~v~~~~G~G~~l~-----~~~~~~l~~~i~~vl~~~~~~~ 427 (467)
||.--+.-.+.+.++ .++++-+. |-..| +..-..+.+- ++-+.+. ..-+..|++.|.+++.. +++.
T Consensus 74 ViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~-f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~-~~~~ 150 (202)
T PRK06718 74 VIAATNDPRVNEQVKEDLPENALFNVITDAESGN-VVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDE-SYES 150 (202)
T ss_pred EEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCe-EEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcch-hHHH
Confidence 998888766666554 45554332 11111 1111222233 2222232 22236677777777733 4456
Q ss_pred HHHHHHHHHHHHHHH
Q 012277 428 LRRNAGKWRKLAKEA 442 (467)
Q Consensus 428 ~~~~a~~l~~~~~~~ 442 (467)
+-+.+.++++.+++.
T Consensus 151 ~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 151 YIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777778888887753
No 242
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=64.40 E-value=7.3 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCcccccccc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~ 57 (467)
++||++...|+-| ..=...+.+.|.+ .||+|.++.++.....+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 3578877776666 6668999999998 499999999998887775
No 243
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.09 E-value=15 Score=34.63 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=41.2
Q ss_pred HhhhcccccceeeecCChhhHHHHHH----hCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 348 LEVLAHEATGCFVTHCGWNSTMEALS----LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 348 ~~lL~~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
..+...+++ +|+=||-||+..|+. .++|++.+-... + |. +.+++++++.+++++++++
T Consensus 58 ~~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-----------l---GF-l~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 58 AEIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN-----------L---GF-LTDLDPDNALQQLSDVLEG 119 (292)
T ss_pred hhcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC-----------C---Cc-ccccCHHHHHHHHHHHHcC
Confidence 344446788 999999999999975 367877664311 2 22 1245688999999999876
No 244
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.65 E-value=37 Score=33.74 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
+..|+++-.-|.|-..-+-.||+.|.++|++|.+++.+.++..+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 45577888889999999999999999999999999999888765
No 245
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=63.48 E-value=76 Score=34.15 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred EEEEEcCCC-CcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHH
Q 012277 15 HCLVLTYPG-QGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFW 93 (467)
Q Consensus 15 ~il~~~~~~-~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (467)
.|++.+..+ .|-..-++.|++.|.++|.+|-++=+-. . + | +.. ......+.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~-----~------~------p--~~~---------~~~~~~~~ 55 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIA-----Q------P------P--LTM---------SEVEALLA 55 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcc-----c------C------C--CCH---------HHHHHHHh
Confidence 466654544 5899999999999999999999875322 1 1 0 000 00000000
Q ss_pred H-hCchhHHHHHHHhcCCCCCccEEEECCchh---------hHHHHHHHcCCCceeeeccc
Q 012277 94 Q-IGPQTLTELVEKMNGSDSPVDCIVYDSILL---------WALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 94 ~-~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~---------~~~~~A~~~giP~v~~~~~~ 144 (467)
. .....++.+++.+.+-...+|+||.|.... ....+|+.++.|++.+....
T Consensus 56 ~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 56 SGQLDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred ccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 0 011222333333322113479999775431 24677999999999987654
No 246
>PRK14099 glycogen synthase; Provisional
Probab=63.09 E-value=12 Score=38.40 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=29.8
Q ss_pred CCcEEEEEcCC------CCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 12 KLAHCLVLTYP------GQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 12 ~~~~il~~~~~------~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
+.||||+++.- +.|=-...-+|.++|+++||+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 56899976642 2244456778899999999999999984
No 247
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=62.43 E-value=7.9 Score=35.84 Aligned_cols=125 Identities=17% Similarity=0.250 Sum_probs=71.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCccccccccC-C-CCCCCcceEecCCC-CCCCCCCCccCHHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDG-YDEGGYAQAESIEAYLER 91 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (467)
+++...++.|--.-++.+|..++.+ |+.|.|++.+...+.+.. . ...+++....+..+ +.. ............
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~---~e~~~~~~~~~~ 98 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSD---EEFERLQAAAEK 98 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHH---HHHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCH---HHHHHHHHHHHH
Confidence 4577778889999999999999988 699999999876665531 0 00122322222211 100 000111111111
Q ss_pred HHHh----------CchhHHHHHHHhcCCCCCccEEEECCchhh-------------------HHHHHHHcCCCceeeec
Q 012277 92 FWQI----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 92 ~~~~----------~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~ 142 (467)
+... ....+...++.+.....+.|+||.|++... ...+|..++||++.++.
T Consensus 99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQ 178 (259)
T PF03796_consen 99 LSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALSQ 178 (259)
T ss_dssp HHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccc
Confidence 1110 122345555555543245799999977521 25678999999998765
Q ss_pred c
Q 012277 143 Q 143 (467)
Q Consensus 143 ~ 143 (467)
.
T Consensus 179 l 179 (259)
T PF03796_consen 179 L 179 (259)
T ss_dssp B
T ss_pred c
Confidence 3
No 248
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.05 E-value=26 Score=32.06 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=23.1
Q ss_pred EEEEEcCCCC-cChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 15 HCLVLTYPGQ-GHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 15 ~il~~~~~~~-GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
|+++++.++. +-+- .++|+.|+++|++|.+...
T Consensus 8 k~~lItGas~~~gIG--~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIA--WGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEecC
Confidence 5556666542 2232 7889999999999988754
No 249
>PRK06179 short chain dehydrogenase; Provisional
Probab=61.60 E-value=37 Score=31.34 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=22.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
.++++. +.|.+- ..+++.|+++|++|+..+..
T Consensus 6 ~vlVtG-asg~iG--~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTG-ASSGIG--RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEec-CCCHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 344444 445453 57889999999999988764
No 250
>PRK06904 replicative DNA helicase; Validated
Probab=61.55 E-value=28 Score=35.47 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=69.4
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccccccccC-C-CCCCCcceEecCCC--CCCCCCCCccCHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDG--YDEGGYAQAESIEAYLE 90 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~ 90 (467)
|++-..|+.|-..-++.+|...+. .|+.|.|++-+...+.+.. . ...+++....+..+ +.. ...........
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~---~e~~~~~~a~~ 300 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQ---QDWAKISSTVG 300 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCCH---HHHHHHHHHHH
Confidence 557778899999999999998875 5999999998866654431 0 11234444333321 111 11111222222
Q ss_pred HHHHh-----------CchhHHHHHHHhcCCCCCccEEEECCchhh-------------------HHHHHHHcCCCceee
Q 012277 91 RFWQI-----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPF 140 (467)
Q Consensus 91 ~~~~~-----------~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~ 140 (467)
.+... ....++..++.+.......|+||.|++... ...+|..++||+|.+
T Consensus 301 ~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~l 380 (472)
T PRK06904 301 MFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVAL 380 (472)
T ss_pred HHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 22110 111233334444332234699999986532 144588899999987
Q ss_pred ec
Q 012277 141 LT 142 (467)
Q Consensus 141 ~~ 142 (467)
+-
T Consensus 381 sQ 382 (472)
T PRK06904 381 SQ 382 (472)
T ss_pred Ee
Confidence 53
No 251
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=61.43 E-value=41 Score=26.63 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=54.8
Q ss_pred EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCc
Q 012277 18 VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGP 97 (467)
Q Consensus 18 ~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (467)
+++.... +-.-++.+++.|.+.|++| +++. .-.+.+. ..|+.+..+.+-... .... .
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i-~aT~-gTa~~L~----~~gi~~~~v~~~~~~---~~~~-------------~ 60 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKL-YATE-GTADFLL----ENGIPVTPVAWPSEE---PQND-------------K 60 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEE-EEcc-HHHHHHH----HcCCCceEeeeccCC---CCCC-------------c
Confidence 3444433 5567889999999999999 3554 4444554 367777665321110 0000 0
Q ss_pred hhHHHHHHHhcCCCCCccEEEECCc---------hhhHHHHHHHcCCCcee
Q 012277 98 QTLTELVEKMNGSDSPVDCIVYDSI---------LLWALDVAKKFGLLGAP 139 (467)
Q Consensus 98 ~~l~~~i~~l~~~~~~~DlVI~D~~---------~~~~~~~A~~~giP~v~ 139 (467)
..+.+++++ ..+|+||.-+. ...-...|-.+|||++.
T Consensus 61 ~~i~~~i~~-----~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 61 PSLRELLAE-----GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hhHHHHHHc-----CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 223344443 45899999543 12345678889999864
No 252
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=60.79 E-value=8.2 Score=30.53 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=52.7
Q ss_pred EEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEe--ccchHhhhcccccceeee
Q 012277 284 VYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--WCPQLEVLAHEATGCFVT 361 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~--~~p~~~lL~~~~~~~~I~ 361 (467)
||++-.-........+.++.++|++.+..+. ... ......+ . .+..... |--....+..|++-.++-
T Consensus 1 IYlAgp~F~~~~~~~~~~~~~~L~~~g~~v~--~P~-~~~~~~~-------~-~~~~~~~~i~~~d~~~i~~~D~via~l 69 (113)
T PF05014_consen 1 IYLAGPFFSEEQKARVERLREALEKNGFEVY--SPQ-DNDENDE-------E-DSQEWAREIFERDLEGIRECDIVIANL 69 (113)
T ss_dssp EEEESGGSSHHHHHHHHHHHHHHHTTTTEEE--GGC-TCSSS---------T-TSHHCHHHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEeCCcCCHHHHHHHHHHHHHHHhCCCEEE--ecc-ccccccc-------c-ccchHHHHHHHHHHHHHHHCCEEEEEC
Confidence 5665444223345677788899999988444 211 1110000 0 0000001 112347788899866666
Q ss_pred cC---ChhhHHHH---HHhCCCeeecCCccch
Q 012277 362 HC---GWNSTMEA---LSLGVPMVAMPQWSDQ 387 (467)
Q Consensus 362 HG---G~~t~~ea---l~~GvP~v~~P~~~DQ 387 (467)
.| +.||..|. .+.|+|++++-....+
T Consensus 70 ~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 70 DGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp CSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred CCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 66 89999996 7789999997654433
No 253
>PRK09620 hypothetical protein; Provisional
Probab=60.79 E-value=22 Score=32.22 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCcChHH------------HHHHHHHHHhCCCEEEEEeCcc
Q 012277 13 LAHCLVLTYPGQGHINP------------LLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p------------~l~la~~L~~rGh~V~~~~~~~ 51 (467)
.+||||.+.|+.=.+.| -..||++|.++|++|+++....
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45666665554333222 2568999999999999997653
No 254
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=60.76 E-value=51 Score=33.38 Aligned_cols=106 Identities=9% Similarity=0.124 Sum_probs=60.8
Q ss_pred EEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHH
Q 012277 16 CLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (467)
Q Consensus 16 il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (467)
|+|.... +.|-..-+..|++.|+++|++|..+-+.. +.+. ..+. ..-.+.+...++. ++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~--d~~D-----~~~~--~~~~g~~~~~ld~------~~----- 61 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGP--DYID-----PMFH--TQATGRPSRNLDS------FF----- 61 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCC--CCCC-----HHHH--HHHhCCchhhCCc------cc-----
Confidence 4554333 45899999999999999999999886531 1111 0010 0000111001000 00
Q ss_pred hCchhHHHHHHHhcCCCCCccEEEECCch------------hhHHHHHHHcCCCceeeeccc
Q 012277 95 IGPQTLTELVEKMNGSDSPVDCIVYDSIL------------LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 95 ~~~~~l~~~i~~l~~~~~~~DlVI~D~~~------------~~~~~~A~~~giP~v~~~~~~ 144 (467)
.....+.+.+..+. ...|++|..-.. ...+.+|+.++.|+|.+....
T Consensus 62 ~~~~~i~~~~~~~~---~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 62 MSEAQIQECFHRHS---KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred CCHHHHHHHHHHhc---ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 12334445555544 336999966431 237789999999999998755
No 255
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=60.61 E-value=11 Score=28.73 Aligned_cols=84 Identities=13% Similarity=0.242 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHHhcC
Q 012277 30 LLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKMNG 109 (467)
Q Consensus 30 ~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ 109 (467)
++.+|+.|.+.||++ ++++.-.+.++ ..|+.+..+-..... .-...+.. .+.+.+..
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~----~~Gi~~~~v~~~~~~-~~~~~g~~----------------~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLK----EHGIEVTEVVNKIGE-GESPDGRV----------------QIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHH----HTT--EEECCEEHST-G-GGTHCH----------------HHHHHHHT
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHH----HcCCCceeeeeeccc-CccCCchh----------------HHHHHHHc
Confidence 478999999999775 34444455666 478886555422211 00001111 34444443
Q ss_pred CCCCccEEEECCchhh---------HHHHHHHcCCCce
Q 012277 110 SDSPVDCIVYDSILLW---------ALDVAKKFGLLGA 138 (467)
Q Consensus 110 ~~~~~DlVI~D~~~~~---------~~~~A~~~giP~v 138 (467)
.++|+||..+.... -..+|...+||++
T Consensus 59 --~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 59 --GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp --TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred --CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 45899999865422 1456788888875
No 256
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.38 E-value=55 Score=29.67 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCchh---hHHHHHHHcCCCcee
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILL---WALDVAKKFGLLGAP 139 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~---~~~~~A~~~giP~v~ 139 (467)
.......++.+.+++.+ .++.+.|..+. -+..+|...|||++.
T Consensus 133 ~tsn~~aM~~~m~~Lk~----r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 133 FTSNEDAMEKLMEALKE----RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred hcCcHHHHHHHHHHHHH----CCeEEEcccccccchhhhhHhhcCCceee
Confidence 33445567788888884 48999998774 367889999999887
No 257
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=60.36 E-value=11 Score=32.82 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (467)
||++.-.|+.|=+.-.+.+.+.|.+.|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 6887777777777777799999999999999999877554
No 258
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=60.22 E-value=45 Score=32.52 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=29.7
Q ss_pred ccccceeeecCChhh---HHHHHHhCCCeeecCCccchhhHHHHHHhH
Q 012277 353 HEATGCFVTHCGWNS---TMEALSLGVPMVAMPQWSDQSTNAKYILDV 397 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t---~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 397 (467)
++|+ +|++||+-| +..|...|+|+++.=.. .-+..+.++...
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e~n-~~~g~~nr~~~~ 135 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHESD-MTPGLANKIALR 135 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEECCC-CCccHHHHHHHH
Confidence 5778 999999986 99999999999874322 233444444433
No 259
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=60.13 E-value=39 Score=28.23 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=22.1
Q ss_pred ccccceeeecCCh------hhHHHHHHhCCCeeecCC
Q 012277 353 HEATGCFVTHCGW------NSTMEALSLGVPMVAMPQ 383 (467)
Q Consensus 353 ~~~~~~~I~HGG~------~t~~eal~~GvP~v~~P~ 383 (467)
++.+ +++|+|- +.+.+|...++|+|++.-
T Consensus 59 ~~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 59 KPGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CCEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3455 8888664 477888999999999853
No 260
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=60.12 E-value=38 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=28.0
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
-+-||.|--.-...||..|+++|++|.++=.+..
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3445669999999999999999999999876543
No 261
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=59.69 E-value=26 Score=29.83 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=22.0
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeecCC
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAMPQ 383 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P~ 383 (467)
.+.+ +++|+|-| .+.+|...++|+|++.-
T Consensus 59 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 59 GLGA--LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CCEE--EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3444 78877744 67889999999999864
No 262
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.52 E-value=32 Score=32.77 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHh-
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL- 374 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~- 374 (467)
.+.+..+.+.|++.+..+.+..... ...+. . .+ . ...-..+++ +|+-||-||+.+++..
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~--~~~~~----------~----~~-~-~~~~~~~d~--vi~~GGDGT~l~~~~~~ 77 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGP--KDNPY----------P----VF-L-ASASELIDL--AIVLGGDGTVLAAARHL 77 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCch--hhccc----------c----ch-h-hccccCcCE--EEEECCcHHHHHHHHHh
Confidence 3566777778888887765433211 10100 0 01 1 222235677 9999999999999864
Q ss_pred ---CCCeeecCC
Q 012277 375 ---GVPMVAMPQ 383 (467)
Q Consensus 375 ---GvP~v~~P~ 383 (467)
++|++.+..
T Consensus 78 ~~~~~pv~gin~ 89 (305)
T PRK02645 78 APHDIPILSVNV 89 (305)
T ss_pred ccCCCCEEEEec
Confidence 789888765
No 263
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=59.19 E-value=17 Score=34.38 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=32.1
Q ss_pred CcEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 13 LAHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 13 ~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
+||++ |..-||-|-..-...||-.|++.|++|.++-.+..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 44555 66666779999999999999999999999955443
No 264
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=59.19 E-value=11 Score=34.82 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
....++++-.+|.|-..=..+||.+|..+|+.|+|++.+.....+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3457888888899988889999999998899999999988777776
No 265
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.99 E-value=21 Score=33.35 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=38.6
Q ss_pred ccccceeeecCChhhHHHHHHh-CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 353 HEATGCFVTHCGWNSTMEALSL-GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~~-GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+|+ +|+=||-||+..|+.. .+|++.+-.. .+|..- +.+.+++.++|++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFLT-EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccCc-ccCHHHHHHHHHHHHcC
Confidence 5778 9999999999999884 5576655320 122222 56789999999999986
No 266
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=58.88 E-value=20 Score=36.40 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=40.4
Q ss_pred hhcccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 350 VLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 350 lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
+...+|+ +|+=||-||++.|... ++|++.+- . - .+|. +.+++.+++.++|.+++++
T Consensus 259 l~~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------~---G---~LGF-Lt~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 259 LHTKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------M---G---SLGF-MTPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------C---C---Ccce-ecccCHHHHHHHHHHHHcC
Confidence 3346788 9999999999999774 46776552 1 0 1233 2367889999999999876
No 267
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=58.62 E-value=29 Score=34.83 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
++||||++-.+++-| +|++.|.+-++...+++.+.+.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~ 39 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNG 39 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCch
Confidence 358999998887766 6899999888665666655544
No 268
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=58.59 E-value=40 Score=29.06 Aligned_cols=110 Identities=21% Similarity=0.304 Sum_probs=60.8
Q ss_pred cChHHHHHHHHHH-HhCCCEEEEEeCccccccccCCCCCCCcceEecCCC-------------CCCC----CCCC-ccCH
Q 012277 25 GHINPLLQFSRRL-QHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDG-------------YDEG----GYAQ-AESI 85 (467)
Q Consensus 25 GH~~p~l~la~~L-~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~----~~~~-~~~~ 85 (467)
+.+.-.+..++.| .+.|.+|.+.-+.. ...+++ ..++.++.++-. .... ++.. ..+.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~t-a~~lr~---~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~ 92 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGT-AELLRK---HVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGL 92 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHH-HHHHHC---C-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHH-HHHHHH---hCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHH
Confidence 5677888999999 88899998877754 444442 335666666511 1000 1111 1122
Q ss_pred HHHHHHHHH-------hCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeecc
Q 012277 86 EAYLERFWQ-------IGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 86 ~~~~~~~~~-------~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~ 143 (467)
..+...+.. .....+...++++.+.. +|+||.+. .+..+|+++|+|++.+.+.
T Consensus 93 ~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G--~~viVGg~---~~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 93 ESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEG--VDVIVGGG---VVCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT----EEEESH---HHHHHHHHTTSEEEESS--
T ss_pred HHHHHHhCCceEEEEECCHHHHHHHHHHHHHcC--CcEEECCH---HHHHHHHHcCCcEEEEEec
Confidence 222222211 12445777888877643 89999994 4678999999999887653
No 269
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=58.52 E-value=13 Score=37.56 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=56.6
Q ss_pred cChHHHHHHHHHHHh--------CCC----EEEEEeCcc-------ccccccCCCCCCCcceEecCCCCCCC---CCCCc
Q 012277 25 GHINPLLQFSRRLQH--------KGI----KVTLVTTRF-------FYKSLHRDSSSSSIPLEAISDGYDEG---GYAQA 82 (467)
Q Consensus 25 GH~~p~l~la~~L~~--------rGh----~V~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~ 82 (467)
|.+.=.+.++++|.+ .|- +|.++|.-. +....++..+..+.....+|.+-... .+-+.
T Consensus 297 GQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwisr 376 (550)
T PF00862_consen 297 GQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWISR 376 (550)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---G
T ss_pred CcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhccch
Confidence 455566777888754 254 466655321 11122222234455565565322210 12223
Q ss_pred cCHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCch--hhHHHHHHHcCCCceeeeccc
Q 012277 83 ESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~ 144 (467)
-+++.++..|... ....+.+++. ..||+|+..+.. ..|.++++++|||.+.+.++.
T Consensus 377 f~lWPyLe~fa~d---~~~~i~~e~~---~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 377 FDLWPYLEEFADD---AEREILAELQ---GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp GG-GGGHHHHHHH---HHHHHHHHHT---S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred hhchhhHHHHHHH---HHHHHHHHhC---CCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 3445555555443 3334444444 336999998655 568899999999998876654
No 270
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.25 E-value=16 Score=30.39 Aligned_cols=80 Identities=13% Similarity=0.298 Sum_probs=57.3
Q ss_pred HhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHH
Q 012277 373 SLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSN 452 (467)
Q Consensus 373 ~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 452 (467)
.+|+| +|+...+-.+|+.+.+. - ..+..-..|.+.+.+.+|+.|. +.-+-++.+++..+.++ |....+.
T Consensus 73 ~CGkp---yPWt~~~L~aa~el~ee-~--eeLs~deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~---g~~v~~~ 141 (158)
T PF10083_consen 73 NCGKP---YPWTENALEAANELIEE-D--EELSPDEKEQFKESLPDLTKDT--PKTKVAATRFKKILSKA---GSIVGDA 141 (158)
T ss_pred hCCCC---CchHHHHHHHHHHHHHH-h--hcCCHHHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHH---hHHHHHH
Confidence 45555 68888888888888776 2 2233234688899999999764 37888888888888886 5555677
Q ss_pred HHHHHHHHHhc
Q 012277 453 IDEFVASLACS 463 (467)
Q Consensus 453 ~~~~~~~l~~~ 463 (467)
+.+++-++.+.
T Consensus 142 ~~dIlVdv~SE 152 (158)
T PF10083_consen 142 IRDILVDVASE 152 (158)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 271
>PRK10867 signal recognition particle protein; Provisional
Probab=58.14 E-value=56 Score=32.82 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCccccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSL 56 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~ 56 (467)
-|+++-.+|.|-..-...||..|+++ |++|.+++.+.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 34577777889999999999999999 9999999999877643
No 272
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=57.50 E-value=75 Score=32.01 Aligned_cols=95 Identities=16% Similarity=0.109 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
.++|+.++. +-.-.+.+++.|.+-|-+|..+..........+ .....++.
T Consensus 302 ~gkrv~i~g-----~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~-------------------------~~~~~l~~ 351 (435)
T cd01974 302 HGKKFALYG-----DPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEK-------------------------EMQALLDA 351 (435)
T ss_pred CCCEEEEEc-----ChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHH-------------------------HHHHHHhh
Confidence 356777664 334588888999988999977665432221110 00000000
Q ss_pred H------HHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeee
Q 012277 92 F------WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFL 141 (467)
Q Consensus 92 ~------~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~ 141 (467)
. .-.....+.++.+.+.+ .++|++|... ....+|+++|+|++.++
T Consensus 352 ~~~~~~~~v~~~~d~~e~~~~i~~--~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 352 SPYGAGAKVYPGKDLWHLRSLLFT--EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCCCcEEEECCCHHHHHHHHhh--cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 0 00001123333333332 2379999995 46789999999998754
No 273
>PRK11914 diacylglycerol kinase; Reviewed
Probab=57.19 E-value=23 Score=33.75 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=48.5
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeec
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTH 362 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~H 362 (467)
.+.++.-|......+.+.++.+.|++.+..+.+...... .. ...+ -........++ +|.-
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-~~-~~~~----------------a~~~~~~~~d~--vvv~ 71 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-HD-ARHL----------------VAAALAKGTDA--LVVV 71 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-HH-HHHH----------------HHHHHhcCCCE--EEEE
Confidence 445554443333456777788889888877654443211 10 0000 01112234567 9999
Q ss_pred CChhhHHHHH----HhCCCeeecCC
Q 012277 363 CGWNSTMEAL----SLGVPMVAMPQ 383 (467)
Q Consensus 363 GG~~t~~eal----~~GvP~v~~P~ 383 (467)
||-||+.|++ ..++|+-++|.
T Consensus 72 GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 72 GGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCchHHHHHhHHhccCCCcEEEEeC
Confidence 9999999987 34789999995
No 274
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=56.87 E-value=47 Score=29.40 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCC--CEEEEEeCccccccccCCCCCCCcceEecC
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG--IKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~~~~~~~~~g~~~~~~~ 71 (467)
||||+|+..|..+-+ .++.+++.+.+ ++|.++.+......+.+-....|+.+..++
T Consensus 1 m~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 1 MKRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred CceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 479998888664333 35666676653 778876554321111100114678877765
No 275
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.84 E-value=49 Score=31.65 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
-|||+-..|.|-..-.-.||..|.+.|++|.++..+.|++-+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi 183 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI 183 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHH
Confidence 3568888899999999999999999999999999999987653
No 276
>PRK06849 hypothetical protein; Provisional
Probab=56.63 E-value=22 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
++++||++-.. ..-.+.+++.|.++||+|.++....
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46789887432 2358999999999999999997764
No 277
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=56.62 E-value=68 Score=29.81 Aligned_cols=70 Identities=21% Similarity=0.452 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCEEEEEeCccc-----cccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHH
Q 012277 31 LQFSRRLQHKGIKVTLVTTRFF-----YKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVE 105 (467)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 105 (467)
..+|+.|++|||+|.++.-..- .+.++ ...++.+..++-++.. ...+..+.+
T Consensus 20 ~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~---~~~~v~v~vi~~DLs~--------------------~~~~~~l~~ 76 (265)
T COG0300 20 AELAKQLARRGYNLILVARREDKLEALAKELE---DKTGVEVEVIPADLSD--------------------PEALERLED 76 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH---HhhCceEEEEECcCCC--------------------hhHHHHHHH
Confidence 5789999999999999987542 11222 2346667666644543 123445555
Q ss_pred HhcCCCCCccEEEECCch
Q 012277 106 KMNGSDSPVDCIVYDSIL 123 (467)
Q Consensus 106 ~l~~~~~~~DlVI~D~~~ 123 (467)
++.....+.|++|...-+
T Consensus 77 ~l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 77 ELKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHHhcCCcccEEEECCCc
Confidence 555544468999998654
No 278
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.29 E-value=23 Score=32.92 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=37.3
Q ss_pred cccceeeecCChhhHHHHHHh-----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 354 EATGCFVTHCGWNSTMEALSL-----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 354 ~~~~~~I~HGG~~t~~eal~~-----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
+|+ +|+=||-||+..|+.. .+|++.+...+ ++ |.. .+.+.+++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G----------~l---GFL-~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD----------QL---GFY-CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC----------CC---eEc-ccCCHHHHHHHHHHHHcC
Confidence 577 9999999999999875 55655554310 12 222 256788899999888876
No 279
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=56.11 E-value=20 Score=29.69 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
..+.||++...+.-||-....-+++.|+..|.+|.....-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 35779999999988999999999999999999998876543
No 280
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=55.88 E-value=21 Score=33.77 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
|||.|.--||-|-..-...||..|+++|++|.++=-+...
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 5788888999999999999999999999999988765543
No 281
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=55.35 E-value=25 Score=29.94 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=34.0
Q ss_pred CcEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 13 LAHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 13 ~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
+|+|+ |+-+...|-..-+-.|.+.|.+||++|-.+-....
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 46787 77788889999999999999999999988876543
No 282
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=55.34 E-value=21 Score=28.12 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEe-------ccchHhhh---cccccceeeecCC
Q 012277 295 KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS-------WCPQLEVL---AHEATGCFVTHCG 364 (467)
Q Consensus 295 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~-------~~p~~~lL---~~~~~~~~I~HGG 364 (467)
+-+...+++++++++|.+.+.+....+. ....+. ..+.++..+ |+....++ .+..+ ...|+|
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d~--~s~~~~----~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pG 81 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPDT--VSTHVD----MADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPG 81 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGGT--TGHHHH----HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEEST
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchhc--cccccc----ccccceecCcchhhhhhccHHHHhhHhhhhcC--cccccc
Confidence 4455778999999999999988865422 111111 445666665 56555444 34455 889999
Q ss_pred hhhHHHHH
Q 012277 365 WNSTMEAL 372 (467)
Q Consensus 365 ~~t~~eal 372 (467)
+|-..|..
T Consensus 82 yg~lse~~ 89 (110)
T PF00289_consen 82 YGFLSENA 89 (110)
T ss_dssp SSTTTTHH
T ss_pred cchhHHHH
Confidence 98776653
No 283
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.31 E-value=7.8 Score=32.78 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
||.|+-.|.+|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666665564 78999999999999999975
No 284
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=54.90 E-value=34 Score=34.25 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~ 56 (467)
+++...|+.|-..-++.+|..++ +.|+.|.|++.+.....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 56777788999999999998887 679999999987655544
No 285
>PLN02470 acetolactate synthase
Probab=54.67 E-value=24 Score=37.13 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=44.5
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEe--------ccchHhhhcccccceeeecCChh----
Q 012277 299 MEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--------WCPQLEVLAHEATGCFVTHCGWN---- 366 (467)
Q Consensus 299 ~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~--------~~p~~~lL~~~~~~~~I~HGG~~---- 366 (467)
.+.+++.|++.|++.++-+.+.....+-+.+. .+++++++. +.-.-.-...-.++++++|.|-|
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~----~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 91 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGGASMEIHQALT----RSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNL 91 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccHHHHHHHh----ccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 45567777777777777666543333322221 111233221 11111111112344488998854
Q ss_pred --hHHHHHHhCCCeeecC
Q 012277 367 --STMEALSLGVPMVAMP 382 (467)
Q Consensus 367 --t~~eal~~GvP~v~~P 382 (467)
.+.+|...++|+|++.
T Consensus 92 l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 92 VTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHhcCCcEEEEe
Confidence 7889999999999984
No 286
>PRK08506 replicative DNA helicase; Provisional
Probab=54.55 E-value=53 Score=33.48 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=70.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccC-C-CCCCCcceEecCCC-CCCCCCCCccCHHHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDG-YDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 92 (467)
|++...|+.|-..-.+.+|...++.|+.|.|++.+.....+.. . ....++.+..+..+ +.. ............+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~---~e~~~~~~a~~~l 271 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDD---DEWERLSDACDEL 271 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCH---HHHHHHHHHHHHH
Confidence 5577778889999999999999888999999998876554431 0 01234443333211 111 0111111122222
Q ss_pred HHh----------CchhHHHHHHHhcCCCCCccEEEECCchhh-------------------HHHHHHHcCCCceeeec
Q 012277 93 WQI----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 93 ~~~----------~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~~ 142 (467)
... ....+...++.+.......|+||.|++..- ...+|..++||+|.++-
T Consensus 272 ~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~lsQ 350 (472)
T PRK08506 272 SKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIALSQ 350 (472)
T ss_pred HcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 110 112233444444433234799999987521 23468899999998754
No 287
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=54.53 E-value=16 Score=36.24 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=37.6
Q ss_pred CCCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 10 SCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
+.+++||++...|+. ...-...+.+.|.++|++|.++.++.....+.
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 456778987766655 45577899999999999999999988777665
No 288
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.40 E-value=28 Score=32.20 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=37.8
Q ss_pred ccccceeeecCChhhHHHHHH-hCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 353 HEATGCFVTHCGWNSTMEALS-LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~-~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+++ +|+=||-||+..|+. .++|++.+-... + |... +++.+++.+++.+++++
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G~-----------l---Gfl~-~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAGR-----------L---GFLS-SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCCC-----------C---cccc-ccCHHHHHHHHHHHHcC
Confidence 4577 999999999999977 477776654211 1 2111 56778888888888876
No 289
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=54.05 E-value=1.4e+02 Score=25.86 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=63.7
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCC-cEEEEecc-------chHhhhccc
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSH-KSLVVSWC-------PQLEVLAHE 354 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~-~v~~~~~~-------p~~~lL~~~ 354 (467)
+++.-.||... -....+++.|++.+..+-++........+.....+. ..+ .++...|. .+.++...+
T Consensus 4 Ill~vtGsiaa---~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~--l~~~~v~~~~~~~~~~~~~~hi~l~~~a 78 (182)
T PRK07313 4 ILLAVSGSIAA---YKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQV--LSKNPVHLDVMDEHDPKLMNHIELAKRA 78 (182)
T ss_pred EEEEEeChHHH---HHHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHH--HhCCceEeccccccccCCcccccccccc
Confidence 55566666542 223456666666676665555433222222111111 222 23332222 222333444
Q ss_pred ccceeeecCChhhHHH-------------HHHh--CCCeeecCCcc----ch---hhHHHHHHhHhccccccC-------
Q 012277 355 ATGCFVTHCGWNSTME-------------ALSL--GVPMVAMPQWS----DQ---STNAKYILDVWKTGLKFP------- 405 (467)
Q Consensus 355 ~~~~~I~HGG~~t~~e-------------al~~--GvP~v~~P~~~----DQ---~~na~~v~~~~G~G~~l~------- 405 (467)
|+ .+|.-+-.||+.- +++. ++|+++.|--. +. ..|..++.+. |+=+.-+
T Consensus 79 D~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~ 156 (182)
T PRK07313 79 DL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLAC 156 (182)
T ss_pred CE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCcccc
Confidence 43 3566666554432 2455 89999999532 22 3467777777 6544332
Q ss_pred -------CcCHHHHHHHHHHHh
Q 012277 406 -------IVKRDAIADCISEIL 420 (467)
Q Consensus 406 -------~~~~~~l~~~i~~vl 420 (467)
-.+.++|.+.+.+.+
T Consensus 157 ~~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 157 GDEGYGALADIETILETIENTL 178 (182)
T ss_pred CCccCCCCCCHHHHHHHHHHHh
Confidence 224466666665554
No 290
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=54.01 E-value=98 Score=29.96 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=20.6
Q ss_pred cEEEECCch---hhHHHHHHHcCCCceeeeccc
Q 012277 115 DCIVYDSIL---LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 115 DlVI~D~~~---~~~~~~A~~~giP~v~~~~~~ 144 (467)
.-||+-.-- -..+.+|+.+|||.+++.+..
T Consensus 75 ~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~ 107 (347)
T COG1171 75 AGVIAASAGNHAQGVAYAAKRLGIKATIVMPET 107 (347)
T ss_pred CceEEecCCcHHHHHHHHHHHhCCCEEEEecCC
Confidence 345554322 446888999999999987643
No 291
>PRK12342 hypothetical protein; Provisional
Probab=53.89 E-value=22 Score=32.74 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=24.5
Q ss_pred ccEEEECCch-h-----hHHHHHHHcCCCceeeecc
Q 012277 114 VDCIVYDSIL-L-----WALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 114 ~DlVI~D~~~-~-----~~~~~A~~~giP~v~~~~~ 143 (467)
||+|++...+ . .+..+|+.+|+|++.+...
T Consensus 110 ~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 7999998554 2 2799999999999987653
No 292
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=53.82 E-value=22 Score=35.28 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=25.9
Q ss_pred EEEE-EcCCCCcChHHHHHHHHHHHhCCCEEEEE
Q 012277 15 HCLV-LTYPGQGHINPLLQFSRRLQHKGIKVTLV 47 (467)
Q Consensus 15 ~il~-~~~~~~GH~~p~l~la~~L~~rGh~V~~~ 47 (467)
+|++ -+.++.|-..-++.|.++|++||++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4554 34446699999999999999999999543
No 293
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=53.52 E-value=71 Score=30.64 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
.-|+++-.+|.|-..-+..||..|..+|++|.++..+.+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3455777778899999999999999999999999988765
No 294
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=53.46 E-value=22 Score=32.99 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
|+|.+..-||-|-..-+..||.+|+++|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5687777778899999999999999999999988443
No 295
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=53.45 E-value=79 Score=24.63 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=52.8
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHH
Q 012277 25 GHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELV 104 (467)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 104 (467)
.+-.-++++++.|.+.|+++ +++.+ -.+.++ ..|+.+..+...- . ....+.+.+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~aT~g-T~~~l~----~~gi~~~~v~~~~-~-------------------~~~~i~~~i 63 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VATEG-TAKYLQ----EAGIPVEVVNKVS-E-------------------GRPNIVDLI 63 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EEchH-HHHHHH----HcCCeEEEEeecC-C-------------------CchhHHHHH
Confidence 35567889999999999999 35554 455555 4677766554211 0 112233333
Q ss_pred HHhcCCCCCccEEEECCc-------hhhHHHHHHHcCCCcee
Q 012277 105 EKMNGSDSPVDCIVYDSI-------LLWALDVAKKFGLLGAP 139 (467)
Q Consensus 105 ~~l~~~~~~~DlVI~D~~-------~~~~~~~A~~~giP~v~ 139 (467)
+ + ..+|+||..+. ...-.-.|-.+|||++.
T Consensus 64 ~---~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 64 K---N--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred H---c--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 3 2 45899998532 23456678899999885
No 296
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=53.43 E-value=22 Score=33.05 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=32.6
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
|.|.|..-||-|...-+..||..|+++|++|.++=-+.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56778877888999999999999999999998885543
No 297
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=53.43 E-value=15 Score=31.83 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
||++...|+.| ..-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 67766665444 4456699999999999999999988776665
No 298
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=53.36 E-value=92 Score=29.87 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHH
Q 012277 27 INPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEK 106 (467)
Q Consensus 27 ~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 106 (467)
.--+..|++.|.++|++|.+.+++...+..+. +.- ..+... .+ + .....+.++..-
T Consensus 193 ~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~------i~~-~~~~~~--------------~~-l--~g~~sL~el~al 248 (334)
T TIGR02195 193 HEHYAELAKRLIDQGYQVVLFGSAKDHPAGNE------IEA-LLPGEL--------------RN-L--AGETSLDEAVDL 248 (334)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEChhhHHHHHH------HHH-hCCccc--------------cc-C--CCCCCHHHHHHH
Confidence 34788999999988999999888765544331 100 000000 00 0 011134444444
Q ss_pred hcCCCCCccEEEECCchhhHHHHHHHcCCCceeeec
Q 012277 107 MNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 107 l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~ 142 (467)
+.. .|++|+.. .....+|..+|+|+|.+..
T Consensus 249 i~~----a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 249 IAL----AKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred HHh----CCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 442 58999885 3467889999999998765
No 299
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=53.26 E-value=1.1e+02 Score=26.49 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=55.6
Q ss_pred hhHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCcc-CcCCccccccccCCCcEEEEeccc
Q 012277 268 TEACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQ-AKLPKKFSDETLTSHKSLVVSWCP 346 (467)
Q Consensus 268 ~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-~~l~~~~~~~~~~~~~v~~~~~~p 346 (467)
..++-+++.+. ...+++-|.. .-.+..+.++..+.+-+++=+...... ...+.. .....+.++...
T Consensus 21 A~~lG~~la~~---g~~lV~GGg~----~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~------~~~~~i~~~~~~ 87 (178)
T TIGR00730 21 AAELGAYLAGQ---GWGLVYGGGR----VGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQ------NLTELIEVNGMH 87 (178)
T ss_pred HHHHHHHHHHC---CCEEEECCCh----HhHHHHHHHHHHhcCCeEEEecchhhhhhhccCC------CCCceEEECCHH
Confidence 35566777753 2455555532 346777888887777776644432100 011111 112333444443
Q ss_pred hH-hhhc-ccccceeeecCChhhHHHHHH---------hCCCeeecC
Q 012277 347 QL-EVLA-HEATGCFVTHCGWNSTMEALS---------LGVPMVAMP 382 (467)
Q Consensus 347 ~~-~lL~-~~~~~~~I~HGG~~t~~eal~---------~GvP~v~~P 382 (467)
.. .+|- .+|+ .++--||.||+-|.+. +.+|++++-
T Consensus 88 ~Rk~~m~~~sda-~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 88 ERKAMMAELADA-FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHHhCCE-EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 33 4444 4444 4666788999988743 499998874
No 300
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=53.25 E-value=71 Score=32.08 Aligned_cols=99 Identities=18% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLER 91 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (467)
.++|++++. +-...+.+++.|.+.|-+|..+..........+ .+.+..-..+...
T Consensus 298 ~gk~v~i~~-----~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~-----~~~~~~~~~~~~~--------------- 352 (428)
T cd01965 298 GGKRVAIAG-----DPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEK-----RMELLASLEGIPA--------------- 352 (428)
T ss_pred cCCEEEEEc-----ChHHHHHHHHHHHHcCCcceEEEEcCCCchhHH-----HHHHhhhhcCCCc---------------
Confidence 456777663 333567888999888988877666433222110 0000000000000
Q ss_pred HHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeee
Q 012277 92 FWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFL 141 (467)
Q Consensus 92 ~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~ 141 (467)
.........++.+.+.+ .++|+||.+. ....+|+++|+|++.++
T Consensus 353 -~~v~~~d~~el~~~i~~--~~pdliig~~---~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 353 -EVVFVGDLWDLESLAKE--EPVDLLIGNS---HGRYLARDLGIPLVRVG 396 (428)
T ss_pred -eEEECCCHHHHHHHhhc--cCCCEEEECc---hhHHHHHhcCCCEEEec
Confidence 00011123344443443 2379999995 45678899999998753
No 301
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=53.22 E-value=43 Score=31.50 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCEEEEEeCccccc
Q 012277 31 LQFSRRLQHKGIKVTLVTTRFFYK 54 (467)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~~~~~ 54 (467)
-++|..|+++|++|.+++.+....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 467888999999999999876543
No 302
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=53.22 E-value=27 Score=29.54 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.7
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhCCC
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSSDQ 311 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 311 (467)
.+|+++||....+.+.++..+.+|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 59999999998888889999999988875
No 303
>PRK13057 putative lipid kinase; Reviewed
Probab=53.07 E-value=28 Score=32.77 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHH----
Q 012277 297 EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEAL---- 372 (467)
Q Consensus 297 ~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal---- 372 (467)
..+..+.+.|++.+..+........ ... . .++- ++....++ +|.-||-||+.|++
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t~~~-~~a-~---------------~~~~--~~~~~~d~--iiv~GGDGTv~~v~~~l~ 71 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPAEDP-DDL-S---------------EVIE--AYADGVDL--VIVGGGDGTLNAAAPALV 71 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEecCCH-HHH-H---------------HHHH--HHHcCCCE--EEEECchHHHHHHHHHHh
Confidence 3566777888888877554443211 000 0 1111 13445667 99999999999985
Q ss_pred HhCCCeeecCC
Q 012277 373 SLGVPMVAMPQ 383 (467)
Q Consensus 373 ~~GvP~v~~P~ 383 (467)
..++|+-++|.
T Consensus 72 ~~~~~lgiiP~ 82 (287)
T PRK13057 72 ETGLPLGILPL 82 (287)
T ss_pred cCCCcEEEECC
Confidence 34789999995
No 304
>PRK08006 replicative DNA helicase; Provisional
Probab=52.84 E-value=52 Score=33.53 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=69.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccccccccC-C-CCCCCcceEecCCC-CCCCCCCCccCHHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDG-YDEGGYAQAESIEAYLER 91 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (467)
|++-.-|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.. . ....++....+..+ +.. ..+.........
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~---~e~~~~~~a~~~ 303 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDD---EDWARISGTMGI 303 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCH---HHHHHHHHHHHH
Confidence 557788899999999999998874 5999999998865554421 0 11233444333321 111 111112222222
Q ss_pred HHHh-----------CchhHHHHHHHhcCCCCCccEEEECCchhh-------------------HHHHHHHcCCCceeee
Q 012277 92 FWQI-----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFL 141 (467)
Q Consensus 92 ~~~~-----------~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~ 141 (467)
+... ....+...++.+.......|+||.|++... ...+|+.++||+|.++
T Consensus 304 ~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 304 LLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 2110 111233334444333234799999986522 1457888999999876
Q ss_pred c
Q 012277 142 T 142 (467)
Q Consensus 142 ~ 142 (467)
-
T Consensus 384 Q 384 (471)
T PRK08006 384 Q 384 (471)
T ss_pred e
Confidence 4
No 305
>PRK13055 putative lipid kinase; Reviewed
Probab=52.33 E-value=49 Score=31.97 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=46.5
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeec
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTH 362 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~H 362 (467)
.|.++..|......+.+..+...|++.+..+.+........ ...++. ........++ +|--
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~-~a~~~~----------------~~~~~~~~d~--vvv~ 66 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPN-SAKNEA----------------KRAAEAGFDL--IIAA 66 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCc-cHHHHH----------------HHHhhcCCCE--EEEE
Confidence 34555544433335667778888888887655433221000 001100 1111233466 9999
Q ss_pred CChhhHHHHHHh------CCCeeecCC
Q 012277 363 CGWNSTMEALSL------GVPMVAMPQ 383 (467)
Q Consensus 363 GG~~t~~eal~~------GvP~v~~P~ 383 (467)
||-||+.|++.. .+|+-++|.
T Consensus 67 GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 67 GGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 999999999743 467888995
No 306
>PRK00784 cobyric acid synthase; Provisional
Probab=52.18 E-value=61 Score=33.24 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=27.7
Q ss_pred EEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 15 HCLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 15 ~il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
+|+|.... +-|-..-+..|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35555443 459999999999999999999987754
No 307
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=52.07 E-value=86 Score=31.46 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
.|+.++..++. .+.+++.|.+-|-+|..+++..
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~ 318 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAI 318 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCC
Confidence 37777666555 8899999999999999987763
No 308
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=52.03 E-value=43 Score=27.40 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=41.9
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecC
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~ 71 (467)
+.||++-..++-+|-...--++..|...|++|.........+.+.+.....+..++.+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 46899999999999999999999999999999988864332222110113456665554
No 309
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=51.69 E-value=34 Score=32.77 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=25.2
Q ss_pred ccccceeeecCChhhHHHHHHhCCCeeecC
Q 012277 353 HEATGCFVTHCGWNSTMEALSLGVPMVAMP 382 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~~GvP~v~~P 382 (467)
++|+ ||+.|+..+..-|-..|+|.+.+-
T Consensus 93 ~pDl--Vi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 93 NPDL--IISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred CCCE--EEECCchHHHHHHHhcCCCEEEEe
Confidence 5688 999999999999999999999654
No 310
>PRK09739 hypothetical protein; Provisional
Probab=51.40 E-value=38 Score=29.87 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCC-cC-hH-HHHHHHHHHHhCCCEEEEEe
Q 012277 12 KLAHCLVLTYPGQ-GH-IN-PLLQFSRRLQHKGIKVTLVT 48 (467)
Q Consensus 12 ~~~~il~~~~~~~-GH-~~-p~l~la~~L~~rGh~V~~~~ 48 (467)
++||||++..+.. +- -. -.-.+++.|.++||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4689996544433 22 22 34445777888899998664
No 311
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=51.37 E-value=45 Score=29.03 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecC
Q 012277 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~ 71 (467)
.-...+|+.|.+.|+++. ++. .-.+.++ ..|+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~-GTAk~L~----e~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STG-GTAKFLK----EAGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-Ecc-HHHHHHH----HcCCeEEEhh
Confidence 457899999999999994 444 4555666 5788887775
No 312
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=51.25 E-value=31 Score=29.40 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=23.3
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeecCC
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAMPQ 383 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P~ 383 (467)
++.+ +++|+|-| .+.||...++|+|++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 4555 89998855 67799999999999853
No 313
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=51.15 E-value=13 Score=32.35 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
||++...|+-|-+. ...+.+.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 45555555545444 4889999999999999999998887765
No 314
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.97 E-value=67 Score=31.46 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=36.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
|+|+-.-|.|-..-+-.+|..+.++|+++-++|.+.|+.-+
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 55777889999999999999999999999999999887644
No 315
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=50.76 E-value=96 Score=28.70 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=36.1
Q ss_pred cEEEEEcCC---CCcChHHHHHHHHHHHhCCCEEEEEeCccccccccC--CCCCCCcceEecC
Q 012277 14 AHCLVLTYP---GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR--DSSSSSIPLEAIS 71 (467)
Q Consensus 14 ~~il~~~~~---~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~--~~~~~g~~~~~~~ 71 (467)
+|..|++.| +-|-=.-.-+|++.|..||++|++.--+.+...-.- +|...|=.|..-+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~D 63 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDD 63 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TT
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecC
Confidence 467777776 346667788999999999999999998877654331 1445566665544
No 316
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=50.64 E-value=69 Score=32.05 Aligned_cols=32 Identities=34% Similarity=0.464 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
|+.++..++ . .+.+++.|.+-|-+|..+++..
T Consensus 282 kv~v~g~~~--~---~~~la~~L~elGmevv~~~t~~ 313 (416)
T cd01980 282 RVLVSGYEG--N---ELLVARLLIESGAEVPYVSTSI 313 (416)
T ss_pred eEEEECCCc--h---hHHHHHHHHHcCCEEEEEecCC
Confidence 655544333 3 6669999999999999998864
No 317
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=50.62 E-value=27 Score=32.43 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=29.9
Q ss_pred EEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 15 HCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 15 ~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
||+ |..-||-|-..-+..||..|+++|++|.++=-+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 554 666667799999999999999999999988443
No 318
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=50.60 E-value=28 Score=32.18 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=24.7
Q ss_pred ccEEEECCch------hhHHHHHHHcCCCceeeecc
Q 012277 114 VDCIVYDSIL------LWALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 114 ~DlVI~D~~~------~~~~~~A~~~giP~v~~~~~ 143 (467)
||+|++...+ ..+..+|+.+|+|++.+...
T Consensus 113 ~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 113 FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 8999998554 25799999999999987653
No 319
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.45 E-value=28 Score=32.61 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhh-hcccccceeeecCChhhHHHHHH-
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEV-LAHEATGCFVTHCGWNSTMEALS- 373 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~l-L~~~~~~~~I~HGG~~t~~eal~- 373 (467)
.+..+++.+.|++.+..+.+..... ..... .. ..+...+ ...+++ +|.-||-||+.+|+.
T Consensus 15 ~~~~~~I~~~L~~~g~~v~v~~~~~--~~~~~-------~~-------~~~~~~~~~~~~d~--vi~iGGDGTlL~a~~~ 76 (277)
T PRK03708 15 LKLAYRVYDFLKVSGYEVVVDSETY--EHLPE-------FS-------EEDVLPLEEMDVDF--IIAIGGDGTILRIEHK 76 (277)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcCc-------cc-------ccccccccccCCCE--EEEEeCcHHHHHHHHh
Confidence 4567777778888887766642111 11100 00 0000011 124677 999999999999984
Q ss_pred --hCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 374 --LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 374 --~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.++|++.++... + |. +.++..+++.+++.+++++
T Consensus 77 ~~~~~pi~gIn~G~-----------l---GF-l~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 77 TKKDIPILGINMGT-----------L---GF-LTEVEPEETFFALSRLLEG 112 (277)
T ss_pred cCCCCeEEEEeCCC-----------C---Cc-cccCCHHHHHHHHHHHHcC
Confidence 356888877421 1 11 1144578888888888876
No 320
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=50.28 E-value=2.5e+02 Score=27.26 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=57.2
Q ss_pred CcEEEE-eccchH---hhhcccccceeeec--CChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC--CcC
Q 012277 337 HKSLVV-SWCPQL---EVLAHEATGCFVTH--CGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP--IVK 408 (467)
Q Consensus 337 ~~v~~~-~~~p~~---~lL~~~~~~~~I~H--GG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~--~~~ 408 (467)
+++.+. +++|.+ .+|..||++-|+|. =|.|++.-.|..|+|+++-- +-.--+-+.+. |+=.... +++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l~~~-~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDLKEQ-GIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHHHhC-CCeEEeccccCC
Confidence 577654 788755 78899999555553 48999999999999998853 22233446666 6554443 888
Q ss_pred HHHHHHHHHHHhc
Q 012277 409 RDAIADCISEILE 421 (467)
Q Consensus 409 ~~~l~~~i~~vl~ 421 (467)
...|.++=+.+..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776653
No 321
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.20 E-value=29 Score=36.30 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=39.9
Q ss_pred ccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 353 HEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
.+++ +|+-||-||+..|.+. ++|++.+-... + | . +.+++.+++.++|.+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G~-----------l-G--F-L~~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMGT-----------V-G--F-LTEFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-----------C-C--c-CcccCHHHHHHHHHHHHcC
Confidence 4677 9999999999999774 77888775321 2 2 2 2256788899999999876
No 322
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=50.07 E-value=1.1e+02 Score=28.88 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHH----hhCCCcEEEEEeCCc-cCcCCccccccccCCCcEEEEe-ccchH--hhh
Q 012277 280 KESVVYVSYGSFVELKAEEMEELAWGL----KSSDQHFLWVVRESE-QAKLPKKFSDETLTSHKSLVVS-WCPQL--EVL 351 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~~~~~~~~~~~~al----~~~~~~~i~~~~~~~-~~~l~~~~~~~~~~~~~v~~~~-~~p~~--~lL 351 (467)
+++.|.++.-.......+....+++++ ++.+.++++.....+ .....+.+.+. .+++..+.. .-|++ .++
T Consensus 171 ~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~--~~~~~~i~~~~~~~e~~~~i 248 (298)
T TIGR03609 171 PEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQ--LLGPAEVLSPLDPEELLGLF 248 (298)
T ss_pred CCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHh--cCCCcEEEecCCHHHHHHHH
Confidence 345687877553323333344444433 334777765542211 11111222222 222222222 22333 578
Q ss_pred cccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhcc
Q 012277 352 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKT 400 (467)
Q Consensus 352 ~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 400 (467)
.++++ +|+. =+-++.-|+.+|+|.+.+.. | +-....+++. |.
T Consensus 249 ~~~~~--vI~~-RlH~~I~A~~~gvP~i~i~y--~-~K~~~~~~~~-g~ 290 (298)
T TIGR03609 249 ASARL--VIGM-RLHALILAAAAGVPFVALSY--D-PKVRAFAADA-GV 290 (298)
T ss_pred hhCCE--EEEe-chHHHHHHHHcCCCEEEeec--c-HHHHHHHHHh-CC
Confidence 88998 8875 44556668999999998852 2 3444445555 54
No 323
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=50.00 E-value=44 Score=30.54 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 012277 31 LQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~ 50 (467)
..+++.|+++|++|.++...
T Consensus 22 ~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 22 RGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred HHHHHHHHHCCCEEEEEeCc
Confidence 56889999999999887654
No 324
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=49.87 E-value=31 Score=31.53 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=27.7
Q ss_pred CCCCCCCcEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 7 KPTSCKLAHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 7 ~~~~~~~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
++..+..++|| |.++|.- =..-+-.....|.++||+|++++-
T Consensus 4 ~~~~~~~~~vL~v~aHPDD-e~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 4 LPPMLDPLRVLVVFAHPDD-EEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccccccCCcEEEEecCCcc-hhhccHHHHHHHHHCCCeEEEEEc
Confidence 45566788998 5555532 223344555666889999999884
No 325
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=49.71 E-value=93 Score=31.20 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (467)
-|+++-.+|.|-..-+..||..|.++|++|.+++.+.+..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 3457777788999999999999999999999999988763
No 326
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.38 E-value=88 Score=28.03 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=30.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
+++---.+.|--.-...++-.+...||.|++++++.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~ 66 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL 66 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEech
Confidence 344455577889999999999999999999999975
No 327
>PRK13059 putative lipid kinase; Reviewed
Probab=49.03 E-value=48 Score=31.34 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHH---
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEAL--- 372 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal--- 372 (467)
.+.+..+...|++.+..+.+...... .. .+. . ....-..+++ +|.-||-||+.|++
T Consensus 18 ~~~~~~i~~~l~~~g~~~~~~~~~~~-~~-~~~----------------~-~~~~~~~~d~--vi~~GGDGTv~evv~gl 76 (295)
T PRK13059 18 ISELDKVIRIHQEKGYLVVPYRISLE-YD-LKN----------------A-FKDIDESYKY--ILIAGGDGTVDNVVNAM 76 (295)
T ss_pred HHHHHHHHHHHHHCCcEEEEEEccCc-ch-HHH----------------H-HHHhhcCCCE--EEEECCccHHHHHHHHH
Confidence 35566777888888877654332211 10 000 0 1122234566 99999999998884
Q ss_pred H---hCCCeeecCC
Q 012277 373 S---LGVPMVAMPQ 383 (467)
Q Consensus 373 ~---~GvP~v~~P~ 383 (467)
. .++|+-++|.
T Consensus 77 ~~~~~~~~lgviP~ 90 (295)
T PRK13059 77 KKLNIDLPIGILPV 90 (295)
T ss_pred HhcCCCCcEEEECC
Confidence 2 3588999995
No 328
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=48.80 E-value=28 Score=22.35 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 012277 408 KRDAIADCISEILEGERGKELRRNAGKW 435 (467)
Q Consensus 408 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l 435 (467)
++++|.+||.++.++. -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5789999999999873 2788777664
No 329
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=48.16 E-value=1e+02 Score=31.88 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred cChHHHHHHH-HHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCC-CC------------CC----CCCCccCHH
Q 012277 25 GHINPLLQFS-RRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDG-YD------------EG----GYAQAESIE 86 (467)
Q Consensus 25 GH~~p~l~la-~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~------------~~----~~~~~~~~~ 86 (467)
|++.-.+.++ +.+...|++|.+.-+. ..+.+++ .-.+.++.++-. ++ .. ++...-.-.
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~---~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~ 112 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKS---RLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPAL 112 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHH---hCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHH
Confidence 6777788888 4466779988776665 4555552 234555555411 10 00 111111112
Q ss_pred HHHHHHHHh--------CchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeecc
Q 012277 87 AYLERFWQI--------GPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 87 ~~~~~~~~~--------~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~ 143 (467)
..+..++.. ........++++++. .+++||.|. .+...|+++|++.|.+.+.
T Consensus 113 ~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~--G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 113 RRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR--GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHhCCceEEEEecCHHHHHHHHHHHHHC--CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 222222221 233567778888774 489999995 4678999999999988763
No 330
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=47.96 E-value=97 Score=28.02 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=34.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC-CCEEEEEeCcccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHK-GIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~~~ 57 (467)
+++...++.|-..-++.++..++.+ |+.|.|++.+...+.+.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 4567777889999999998888877 99999999887666443
No 331
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=47.80 E-value=93 Score=31.32 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=53.3
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERF 92 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (467)
++|+.+... -.....+++.|.+-|-+|..+......+..++ +..+ . ....+.
T Consensus 311 Gkrvai~~~-----~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-----------~~~~----~-~~~~D~------- 362 (432)
T TIGR01285 311 GKKVAIAAE-----PDLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-----------LPVE----T-VVIGDL------- 362 (432)
T ss_pred CCEEEEEcC-----HHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-----------CCcC----c-EEeCCH-------
Confidence 567776643 34778999999999999988887665443221 1100 0 000111
Q ss_pred HHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceee
Q 012277 93 WQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPF 140 (467)
Q Consensus 93 ~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~ 140 (467)
..+.++++. .++|+||.+. ....+|+++|||++.+
T Consensus 363 -----~~l~~~i~~-----~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 -----EDLEDLACA-----AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred -----HHHHHHHhh-----cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 112233332 2479999985 4577999999999875
No 332
>PRK08840 replicative DNA helicase; Provisional
Probab=47.51 E-value=61 Score=32.95 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=69.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccccccccC-C-CCCCCcceEecCCC-CCCCCCCCccCHHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDG-YDEGGYAQAESIEAYLER 91 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (467)
|++-.-|+.|-..-.+.+|...+. .|+.|.|++-+...+.+.. . ....++....+..+ +.. ..+.........
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~---~e~~~~~~a~~~ 296 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDD---EDWARISSTMGI 296 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCH---HHHHHHHHHHHH
Confidence 567788899999999999999874 5999999998866554421 0 11234443333221 111 111112222222
Q ss_pred HHHh-----------CchhHHHHHHHhcCCCCCccEEEECCchhh-------------------HHHHHHHcCCCceeee
Q 012277 92 FWQI-----------GPQTLTELVEKMNGSDSPVDCIVYDSILLW-------------------ALDVAKKFGLLGAPFL 141 (467)
Q Consensus 92 ~~~~-----------~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~-------------------~~~~A~~~giP~v~~~ 141 (467)
+... ....++..++.+.......|+||.|++..- ...+|..++||+|.++
T Consensus 297 l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 376 (464)
T PRK08840 297 LMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALS 376 (464)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 2110 112334444444433223699999986522 1457888999999875
Q ss_pred c
Q 012277 142 T 142 (467)
Q Consensus 142 ~ 142 (467)
-
T Consensus 377 Q 377 (464)
T PRK08840 377 Q 377 (464)
T ss_pred e
Confidence 3
No 333
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=47.34 E-value=27 Score=33.36 Aligned_cols=48 Identities=8% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEe
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEA 69 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~ 69 (467)
..|||+|+-.|+.|= .+|..|++.||+|+++..... +.+. ..|+.+..
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~~-~~~~----~~g~~~~~ 51 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSDY-EAVR----ENGLQVDS 51 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCCH-HHHH----hCCeEEEe
Confidence 457999996666553 456789999999999998663 3343 35665543
No 334
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=47.32 E-value=23 Score=32.23 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCcccccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~ 57 (467)
||++.-.|+.+=+.-.+.+.+.|.++ ||+|.++.++.....+.
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 35544444444447899999999999 99999999988777776
No 335
>PRK05595 replicative DNA helicase; Provisional
Probab=47.18 E-value=78 Score=32.01 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=32.8
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~ 56 (467)
+++-..++.|-..-.+.+|..++ +.|+.|.|++.+...+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45677778899999999998875 569999999988655444
No 336
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=47.17 E-value=1e+02 Score=24.25 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHH
Q 012277 26 HINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVE 105 (467)
Q Consensus 26 H~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 105 (467)
+=.-++.+++.|.+.|+++ +++.. -.+.++ ..|+.+..+-..-. + ....+.+.++
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT~g-Ta~~L~----~~Gi~~~~v~~~~~--~-----------------g~~~i~~~i~ 64 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FATGG-TSRVLA----DAGIPVRAVSKRHE--D-----------------GEPTVDAAIA 64 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EECcH-HHHHHH----HcCCceEEEEecCC--C-----------------CCcHHHHHHh
Confidence 4456789999999999999 35544 455555 46787776642111 0 1122223332
Q ss_pred HhcCCCCCccEEEECCc--h--------hhHHHHHHHcCCCcee
Q 012277 106 KMNGSDSPVDCIVYDSI--L--------LWALDVAKKFGLLGAP 139 (467)
Q Consensus 106 ~l~~~~~~~DlVI~D~~--~--------~~~~~~A~~~giP~v~ 139 (467)
+. ..+|+||.-+. . ..-..+|-..+||++.
T Consensus 65 ~~----g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 65 EK----GKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CC----CCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 20 23799988431 1 2235568888999876
No 337
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=47.15 E-value=61 Score=32.60 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.1
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeec
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAM 381 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~ 381 (467)
++.+ +++|.|-| .+.+|...++|+|++
T Consensus 63 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 4555 88988854 678999999999998
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.35 E-value=93 Score=31.26 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=33.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCcccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKS 55 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~ 55 (467)
|+++..+|.|-..-+..||..|. ++|++|.+++.+.+...
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 44677778899999999999997 58999999999987654
No 339
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.21 E-value=80 Score=26.73 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=55.2
Q ss_pred hhHHHHHHhCCCeeecCCcc--chhhHHHHHHhHhccccccC--CcCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 012277 366 NSTMEALSLGVPMVAMPQWS--DQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEILEGERGKELRRNAGKWRKLAK 440 (467)
Q Consensus 366 ~t~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 440 (467)
.|+.|--.+|.=.+. |.-. =+..|+++.++- |.=..+- ..+.+.|.++..+=|+|.+..++++.+.++.+..+
T Consensus 88 ~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~rF-gfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 88 ESTSEQASAGLDRLS-PEEFARFTELNAAYVERF-GFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHhc-CCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 467777777766532 2111 256799999999 8776655 77899999999999998877789888888877655
No 340
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=45.90 E-value=49 Score=34.63 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEe--------ccchH--hhhcccccceeeecCChh-
Q 012277 298 EMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS--------WCPQL--EVLAHEATGCFVTHCGWN- 366 (467)
Q Consensus 298 ~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~--------~~p~~--~lL~~~~~~~~I~HGG~~- 366 (467)
.-+.+++.|++.|++.++-+.+.....+-+.+. ..+++.++. +.-.- -+-.++.+ +++|.|-|
T Consensus 15 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~----~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~GpG~ 88 (564)
T PRK08155 15 GAELIVRLLERQGIRIVTGIPGGAILPLYDALS----QSTQIRHILARHEQGAGFIAQGMARTTGKPAV--CMACSGPGA 88 (564)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHh----ccCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEECCCCcH
Confidence 455567777777777776665543333323221 112333221 11111 12233444 88887754
Q ss_pred -----hHHHHHHhCCCeeecC
Q 012277 367 -----STMEALSLGVPMVAMP 382 (467)
Q Consensus 367 -----t~~eal~~GvP~v~~P 382 (467)
.+.||...++|+|++.
T Consensus 89 ~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 89 TNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHHHhcCCCEEEEe
Confidence 7899999999999974
No 341
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=45.87 E-value=88 Score=27.37 Aligned_cols=61 Identities=10% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCcEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccC-------CCCCCCcceEecCC
Q 012277 12 KLAHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHR-------DSSSSSIPLEAISD 72 (467)
Q Consensus 12 ~~~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~ 72 (467)
.+.||+ |+..++.-|-.-...+++.|++.|.+|.+++-+...+..++ .++..+=+++.+|.
T Consensus 106 ~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~ 174 (187)
T cd01452 106 QKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPP 174 (187)
T ss_pred CcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCC
Confidence 345754 77777778877788999999999999999997754443221 12234456677764
No 342
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=45.60 E-value=60 Score=29.65 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
|.++++. +.|.+- ..+++.|.++|++|.++...
T Consensus 16 k~vlItG-as~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVTG-GNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEeC-CCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 3344433 445444 67899999999999988765
No 343
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=45.27 E-value=1e+02 Score=29.71 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCc-----ChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHH
Q 012277 14 AHCLVLTYPGQG-----HINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAY 88 (467)
Q Consensus 14 ~~il~~~~~~~G-----H~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 88 (467)
..|+|.+..+.| -..-+..|++.|.++|.+|.+.+++.-.+.+++.... ... ...
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-----------~~~-~~~-------- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-----------LPN-AVI-------- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-----------cCC-ccc--------
Confidence 356666662332 3457899999999999999999988444443310000 000 000
Q ss_pred HHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccc
Q 012277 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 89 ~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (467)
-.....+.++..-+.. .|++|+.. .....+|..+|.|+|.+....
T Consensus 236 -----l~~k~sL~e~~~li~~----a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 236 -----LAGKTSLEELAALIAG----ADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -----cCCCCCHHHHHHHHhc----CCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 0111233333333332 58988875 446788999999999986533
No 344
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=45.11 E-value=90 Score=30.81 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCC-CEEEEEeCc-cccccccCCCCCCCcceEecC
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKG-IKVTLVTTR-FFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rG-h~V~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 71 (467)
|+|||++-.|.-|+ .+|..|+++| ++|++++.. ....++.. .....+.+..++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~-~~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAE-LIGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHh-hccccceeEEec
Confidence 46788887755554 5788999999 999999976 44444431 111245555555
No 345
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=44.55 E-value=2.4e+02 Score=31.52 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=62.8
Q ss_pred eccchH---hhhcccccceeeecC---Chh-hHHHHHHhCC---CeeecCCccchhhHHHHHHhHhc-cccccCCcCHHH
Q 012277 343 SWCPQL---EVLAHEATGCFVTHC---GWN-STMEALSLGV---PMVAMPQWSDQSTNAKYILDVWK-TGLKFPIVKRDA 411 (467)
Q Consensus 343 ~~~p~~---~lL~~~~~~~~I~HG---G~~-t~~eal~~Gv---P~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~ 411 (467)
..+|+. .++..+|+ ++.-. |+| ...|+++++. -++|++ |=-.-|. .+ | -|+.++..+.++
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~---~L-~~~AllVNP~D~~~ 516 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQ---SL-GAGAILVNPWNITE 516 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHH---Hh-CCceEEECCCCHHH
Confidence 346655 56677888 66544 776 5569999965 233333 2222232 22 3 255666778999
Q ss_pred HHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012277 412 IADCISEILE-GERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 412 l~~~i~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 463 (467)
++++|.+.|. ++ ++-+++.+++.+.+.. -+...-++.|+++|...
T Consensus 517 vA~AI~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 517 VAASIAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 9999999987 43 2444444455554442 34455567777777644
No 346
>PRK06194 hypothetical protein; Provisional
Probab=44.41 E-value=87 Score=29.09 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCEEEEEeCc
Q 012277 31 LQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 31 l~la~~L~~rGh~V~~~~~~ 50 (467)
..+++.|.++|++|+++...
T Consensus 20 ~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 20 LAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 45788999999999887653
No 347
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=44.24 E-value=82 Score=26.83 Aligned_cols=29 Identities=21% Similarity=-0.024 Sum_probs=23.4
Q ss_pred ccEEEECCch---hhHHHHHHHcCCCceeeec
Q 012277 114 VDCIVYDSIL---LWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 114 ~DlVI~D~~~---~~~~~~A~~~giP~v~~~~ 142 (467)
||+|+..... ..+..+|.++|.|++.-..
T Consensus 84 p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 84 PSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred CCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 6999998665 4589999999999888543
No 348
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=43.74 E-value=49 Score=29.39 Aligned_cols=145 Identities=15% Similarity=0.125 Sum_probs=75.0
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccce
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGC 358 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~ 358 (467)
.+++++.|..|..+ .+-+..|.+.|.++.++..... +++... ....++....--.+...+..+++
T Consensus 8 ~gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~-----~~l~~l-~~~~~i~~~~~~~~~~dl~~~~l-- 72 (205)
T TIGR01470 8 EGRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE-----SELTLL-AEQGGITWLARCFDADILEGAFL-- 72 (205)
T ss_pred CCCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC-----HHHHHH-HHcCCEEEEeCCCCHHHhCCcEE--
Confidence 34667777766554 2335566677888776653321 121111 02235655421122445677888
Q ss_pred eeecCChhhHHH-----HHHhCCCeee--cCCccchhhHHHHHHhHhccccccC-----CcCHHHHHHHHHHHhcCcchH
Q 012277 359 FVTHCGWNSTME-----ALSLGVPMVA--MPQWSDQSTNAKYILDVWKTGLKFP-----IVKRDAIADCISEILEGERGK 426 (467)
Q Consensus 359 ~I~HGG~~t~~e-----al~~GvP~v~--~P~~~DQ~~na~~v~~~~G~G~~l~-----~~~~~~l~~~i~~vl~~~~~~ 426 (467)
||..-|...+.+ |-..|+|+-+ -|-..|=. .-..+.+- ++-+.+. ..-+..|++.|.+++.. .+.
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~-~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~-~~~ 149 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFI-FPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPP-SLG 149 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEE-EeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcch-hHH
Confidence 999888764443 4456888833 23222211 11122222 2222222 22236677777777754 223
Q ss_pred HHHHHHHHHHHHHHH
Q 012277 427 ELRRNAGKWRKLAKE 441 (467)
Q Consensus 427 ~~~~~a~~l~~~~~~ 441 (467)
.+-+...++++.+++
T Consensus 150 ~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 150 DLATLAATWRDAVKK 164 (205)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666667766664
No 349
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=43.42 E-value=41 Score=28.79 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=21.9
Q ss_pred cccccceeeecCCh------hhHHHHHHhCCCeeecC
Q 012277 352 AHEATGCFVTHCGW------NSTMEALSLGVPMVAMP 382 (467)
Q Consensus 352 ~~~~~~~~I~HGG~------~t~~eal~~GvP~v~~P 382 (467)
.++.+ +++|.|- +.+.+|...++|+|++.
T Consensus 63 g~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~ 97 (172)
T PF02776_consen 63 GRPGV--VIVTSGPGATNALTGLANAYADRIPVLVIT 97 (172)
T ss_dssp SSEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEE
T ss_pred ccceE--EEeecccchHHHHHHHhhcccceeeEEEEe
Confidence 44566 8888874 47788999999999975
No 350
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=43.35 E-value=69 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=23.4
Q ss_pred CccEEEEC-Cch-hhHHHHHHHcCCCceeeeccc
Q 012277 113 PVDCIVYD-SIL-LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 113 ~~DlVI~D-~~~-~~~~~~A~~~giP~v~~~~~~ 144 (467)
.||+||.- +.. ..+..=|..+|||+|.+.-+.
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 45877664 443 556777999999999987765
No 351
>PRK08760 replicative DNA helicase; Provisional
Probab=43.18 E-value=1.1e+02 Score=31.41 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=33.5
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~ 56 (467)
|++...|+.|-..-.+.+|...+. .|+.|.|++-+...+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 567788899999999999998875 49999999987755544
No 352
>CHL00067 rps2 ribosomal protein S2
Probab=42.75 E-value=77 Score=28.78 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCccEEEECCch--hhHHHHHHHcCCCceeeeccc
Q 012277 112 SPVDCIVYDSIL--LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 112 ~~~DlVI~D~~~--~~~~~~A~~~giP~v~~~~~~ 144 (467)
+.||+||.-... ..+..=|..+|||+|.+.-+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 345877665443 456777999999999997765
No 353
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=42.66 E-value=43 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
+|.|+.-||-|-..-+..||..|+++|++|.++=-+..
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 46677777889999999999999999999998865543
No 354
>PRK13337 putative lipid kinase; Reviewed
Probab=42.43 E-value=81 Score=29.92 Aligned_cols=68 Identities=7% Similarity=-0.017 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHh-
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL- 374 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~- 374 (467)
...+..+...|++.+..+.+...... ... .++ + ....-...++ +|..||-||+.|++..
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~~-~~a-~~~---------------a-~~~~~~~~d~--vvv~GGDGTl~~vv~gl 77 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTGP-GDA-TLA---------------A-ERAVERKFDL--VIAAGGDGTLNEVVNGI 77 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCC-CCH-HHH---------------H-HHHHhcCCCE--EEEEcCCCHHHHHHHHH
Confidence 34566677778888877654443211 111 110 0 1111223456 9999999999999862
Q ss_pred -----CCCeeecCC
Q 012277 375 -----GVPMVAMPQ 383 (467)
Q Consensus 375 -----GvP~v~~P~ 383 (467)
..|+-++|.
T Consensus 78 ~~~~~~~~lgiiP~ 91 (304)
T PRK13337 78 AEKENRPKLGIIPV 91 (304)
T ss_pred hhCCCCCcEEEECC
Confidence 347788895
No 355
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=42.31 E-value=2.4e+02 Score=24.77 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=54.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc----c-cccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY----K-SLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLE 90 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~----~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
|.+++..+.|-....+.+|-.-.-+|.+|.++-.-.-. + .... .-..++.|+..+.++.-+. ..... .
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~-~~~~~v~~~~~~~g~tw~~-~~~~~--d--- 103 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALE-KFGLGVEFHGMGEGFTWET-QDREA--D--- 103 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHH-hhccceeEEecCCceeCCC-cCcHH--H---
Confidence 45778888888887777766666667787776532111 1 1110 0124577888876664311 11111 1
Q ss_pred HHHHhCchhHHHHHHHhcCCCCCccEEEECCchh
Q 012277 91 RFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILL 124 (467)
Q Consensus 91 ~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~ 124 (467)
. ..+....+...+.+.+ ..+|+||.|.+..
T Consensus 104 -~-~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 104 -I-AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred -H-HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 1 2233344444444554 3589999998774
No 356
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=42.30 E-value=26 Score=30.20 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcChHH-HHHHHHHHHh-CCCEEEEEeCcccccccc
Q 012277 15 HCLVLTYPGQGHINP-LLQFSRRLQH-KGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 15 ~il~~~~~~~GH~~p-~l~la~~L~~-rGh~V~~~~~~~~~~~~~ 57 (467)
||++.-.| .||... ...+.+.|.+ +||+|.++.++...+.+.
T Consensus 1 ~i~~gitG-sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITG-SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEc-cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 35543333 377765 8899999984 599999999998776554
No 357
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.25 E-value=89 Score=28.42 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCEEEEEeC
Q 012277 31 LQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 31 l~la~~L~~rGh~V~~~~~ 49 (467)
..+++.|.++|++|.+...
T Consensus 21 ~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 21 RAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5689999999999987754
No 358
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=42.23 E-value=1.2e+02 Score=29.82 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCcEEEEe--c-cchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhcccccc---CCcCH
Q 012277 336 SHKSLVVS--W-CPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKF---PIVKR 409 (467)
Q Consensus 336 ~~~v~~~~--~-~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l---~~~~~ 409 (467)
++++.+.. | .--..++++|++ +|. .=+-++.-|++.|+|.+.+-. |+-+....+++ |+-... ..++.
T Consensus 265 ~~~i~~~~d~~~~~~~~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~-gl~~~~~~i~~~~~ 337 (385)
T COG2327 265 SAEILVSSDEYAEELGGILAACDL--IVG-MRLHSAIMALAFGVPAIAIAY---DPKVRGLMQDL-GLPGFAIDIDPLDA 337 (385)
T ss_pred ccceEeecchHHHHHHHHhccCce--EEe-ehhHHHHHHHhcCCCeEEEee---cHHHHHHHHHc-CCCcccccCCCCch
Confidence 46666652 3 222468888887 553 457788899999999998864 44444556666 655333 28999
Q ss_pred HHHHHHHHHHhcCcchHHHHHH
Q 012277 410 DAIADCISEILEGERGKELRRN 431 (467)
Q Consensus 410 ~~l~~~i~~vl~~~~~~~~~~~ 431 (467)
+.+...+.+.+.+- ++.+++
T Consensus 338 ~~l~~~~~e~~~~~--~~~~~~ 357 (385)
T COG2327 338 EILSAVVLERLTKL--DELRER 357 (385)
T ss_pred HHHHHHHHHHHhcc--HHHHhh
Confidence 99999998888764 244444
No 359
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=42.21 E-value=42 Score=30.70 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCC-CCCCccCHHHHHHHHHHhCchhHHHHHHHhc
Q 012277 30 LLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEG-GYAQAESIEAYLERFWQIGPQTLTELVEKMN 108 (467)
Q Consensus 30 ~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~ 108 (467)
+-.+++.+.+.|-+|.+.++..+...+.+......+-+..+|...... ..+..-....++.+--.+..+.-..++++..
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~ 196 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQYR 196 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHhC
Confidence 345667777778888888888877777654444456666666322110 0000001111122222233344456666655
Q ss_pred CCCCCccEEEECCchhh-----HHHHHHHcCCCceeee
Q 012277 109 GSDSPVDCIVYDSILLW-----ALDVAKKFGLLGAPFL 141 (467)
Q Consensus 109 ~~~~~~DlVI~D~~~~~-----~~~~A~~~giP~v~~~ 141 (467)
.|+||+=...-. =..+|+.+|||+|.+-
T Consensus 197 -----id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 197 -----IDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred -----CCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 799999754422 3678999999999863
No 360
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=42.09 E-value=3.4e+02 Score=26.53 Aligned_cols=48 Identities=27% Similarity=0.282 Sum_probs=36.5
Q ss_pred cEEEEeccchH---hhhcccccceeeecCChhhHHHHHHhCCCeee--cCCccchhhHHH
Q 012277 338 KSLVVSWCPQL---EVLAHEATGCFVTHCGWNSTMEALSLGVPMVA--MPQWSDQSTNAK 392 (467)
Q Consensus 338 ~v~~~~~~p~~---~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~--~P~~~DQ~~na~ 392 (467)
.+.+.+|++|. .+|-.||+ =+-- |--|+.-|..+|+|+|= +| |.++|.
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~--NfVR-GEDSFVRAqWAgkPfvWhIYP----QeddaH 295 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDL--NFVR-GEDSFVRAQWAGKPFVWHIYP----QEEDAH 295 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChh--cEee-chhHHHHHHHcCCCceeeccc----CchhhH
Confidence 45566899876 89999998 4444 78899999999999974 67 555543
No 361
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=42.02 E-value=25 Score=34.80 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
+++||++...|+.| ..-...+.+.|.+.|++|.++.++.....+.
T Consensus 2 ~~k~IllgiTGSia-a~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 2 ENKKILLGVTGGIA-AYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 35688877665544 4558999999999999999999988777765
No 362
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=41.93 E-value=71 Score=29.58 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=23.3
Q ss_pred CccEEEE-CCch-hhHHHHHHHcCCCceeeeccc
Q 012277 113 PVDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 113 ~~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (467)
.||+||. |+.. ..+..=|..+|||+|.+.-+.
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 3587766 4444 556777999999999987665
No 363
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=41.90 E-value=1.9e+02 Score=29.41 Aligned_cols=58 Identities=16% Similarity=0.017 Sum_probs=40.9
Q ss_pred ccCHHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhH-----------HHHHHHcCCCceeeec
Q 012277 82 AESIEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWA-----------LDVAKKFGLLGAPFLT 142 (467)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~-----------~~~A~~~giP~v~~~~ 142 (467)
..+...|.+.+.......+.+.++.+. +.+|+|+....-.++ ..+|+..+.|.|.+.-
T Consensus 97 ~~s~~~yy~~~~~~l~~~v~~s~~~l~---~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~D 165 (486)
T COG1492 97 RKSAVEYYQEGKGLLWVAVKESLERLD---REYDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGD 165 (486)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhh---hcccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEe
Confidence 344566666666666667777777666 347999998765444 6678899999988643
No 364
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=41.81 E-value=82 Score=29.62 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=44.0
Q ss_pred eEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeec
Q 012277 283 VVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTH 362 (467)
Q Consensus 283 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~H 362 (467)
.|+++.-|......+.+.++...|++.+..+.+...... ... .. .+. ...-..+++ +|.-
T Consensus 5 ~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~-~~~-~~---------------~~~-~~~~~~~d~--ivv~ 64 (293)
T TIGR00147 5 PAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEK-GDA-AR---------------YVE-EARKFGVDT--VIAG 64 (293)
T ss_pred EEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCc-ccH-HH---------------HHH-HHHhcCCCE--EEEE
Confidence 344554222222345677788888888877654442211 000 00 011 111224566 9999
Q ss_pred CChhhHHHHHHh-----CCCee-ecCC
Q 012277 363 CGWNSTMEALSL-----GVPMV-AMPQ 383 (467)
Q Consensus 363 GG~~t~~eal~~-----GvP~v-~~P~ 383 (467)
||-||+.|++.. ..|.+ ++|.
T Consensus 65 GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 65 GGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 999999997643 34444 4885
No 365
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=41.69 E-value=26 Score=30.38 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
..+++++-.+|.|-..-..++++++.++|+.|.|+........+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457888888899988889999999999999999999887777766
No 366
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=41.65 E-value=77 Score=34.71 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=45.0
Q ss_pred CcCHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 012277 406 IVKRDAIADCISEIL------EGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSK 464 (467)
Q Consensus 406 ~~~~~~l~~~i~~vl------~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~~ 464 (467)
..+.+++.+....++ ++.+...-.++.++.++.+++++++|. +.+.|++++++|+++.
T Consensus 473 a~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gA-sdeEI~~Lm~eLR~Am 536 (851)
T TIGR02302 473 ARTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALERGA-SDEEIKQLTDKLRAAM 536 (851)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 467888888877774 466566777888888888888877766 5789999999998764
No 367
>PRK13768 GTPase; Provisional
Probab=41.59 E-value=1e+02 Score=28.33 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=31.1
Q ss_pred cEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 14 AHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
+++. |.-.+|.|--.-+..++..|..+|++|.++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 3444 56666779999999999999999999999976553
No 368
>PRK07206 hypothetical protein; Provisional
Probab=41.50 E-value=1.2e+02 Score=30.14 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
+++++-.... ...+++++.++|++|..++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 5666665433 3468999999999999888764
No 369
>PRK11519 tyrosine kinase; Provisional
Probab=41.47 E-value=2.6e+02 Score=30.38 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=31.3
Q ss_pred CcEEE-EEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 13 LAHCL-VLT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 13 ~~~il-~~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
+.|++ |.+ .++-|--.-...||..|+..|++|.++-.+..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 34565 444 34669999999999999999999999976543
No 370
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=41.44 E-value=57 Score=28.15 Aligned_cols=27 Identities=22% Similarity=0.082 Sum_probs=22.4
Q ss_pred ccEEEECCch---hhHHHHHHHcCCCceee
Q 012277 114 VDCIVYDSIL---LWALDVAKKFGLLGAPF 140 (467)
Q Consensus 114 ~DlVI~D~~~---~~~~~~A~~~giP~v~~ 140 (467)
||+|++.... ..+..+|.++|.|++.=
T Consensus 92 p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 92 PDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred CCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 6999998665 44789999999998874
No 371
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=41.27 E-value=29 Score=32.81 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
|||+|+-.|..| ..+|..|+++||+|+++..+...+.+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALR 39 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHH
Confidence 578888666655 356788999999999998744444444
No 372
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=41.19 E-value=76 Score=30.32 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=30.9
Q ss_pred EcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 19 LTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
++.||+|-.=-.+.|++.|.++|++|.+++-+.-.
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 67789999999999999999999999999985543
No 373
>PRK13236 nitrogenase reductase; Reviewed
Probab=41.03 E-value=45 Score=31.58 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=32.7
Q ss_pred cEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 14 AHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
||++ |..-||-|-..-...||-.|+++|++|.++=.+...
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 4776 666667799999999999999999999999554433
No 374
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=41.01 E-value=67 Score=30.32 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKS 55 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~ 55 (467)
+.-+|.|.-.||-|--.-.-.|++.|.++||+|-++.-+....+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 33455588888999999999999999999999999987654443
No 375
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=40.77 E-value=31 Score=35.87 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=48.5
Q ss_pred cchHhhhcccccceeeecC--ChhhHHHHHHhCCCeeecCCcc-----chhhHHHHHHhHhccccccC-CcCHHHHHHHH
Q 012277 345 CPQLEVLAHEATGCFVTHC--GWNSTMEALSLGVPMVAMPQWS-----DQSTNAKYILDVWKTGLKFP-IVKRDAIADCI 416 (467)
Q Consensus 345 ~p~~~lL~~~~~~~~I~HG--G~~t~~eal~~GvP~v~~P~~~-----DQ~~na~~v~~~~G~G~~l~-~~~~~~l~~~i 416 (467)
+++.+++.-|+++.|-+-= =.=|-+||+++|||.|..-+.+ .+... .-... |+-+.-+ ..+.++..+.|
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~--~~~~~-GV~VvdR~~~n~~e~v~~l 537 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE--DPEEY-GVYVVDRRDKNYDESVNQL 537 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS---HHGGG-TEEEE-SSSS-HHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc--cCcCC-cEEEEeCCCCCHHHHHHHH
Confidence 4788999999994444310 1148899999999999865533 22211 11334 5554444 55666555555
Q ss_pred HHHh----cCcc--hHHHHHHHHHHHHHH
Q 012277 417 SEIL----EGER--GKELRRNAGKWRKLA 439 (467)
Q Consensus 417 ~~vl----~~~~--~~~~~~~a~~l~~~~ 439 (467)
.+.| .-.+ ....|++++++++++
T Consensus 538 a~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 538 ADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 5544 3221 135777777777654
No 376
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=40.68 E-value=2e+02 Score=25.52 Aligned_cols=47 Identities=17% Similarity=0.053 Sum_probs=34.1
Q ss_pred hhHHHHHhhcC--CCCceEEEeecccccCCHHHHHHHHHHHhhC-CCcEEEE
Q 012277 268 TEACMKWLNDR--AKESVVYVSYGSFVELKAEEMEELAWGLKSS-DQHFLWV 316 (467)
Q Consensus 268 ~~~l~~~l~~~--~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~ 316 (467)
.+.+.+++... ....++||...|. ...+....+.++++++ |..+...
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 45667777654 3566889877776 4567888899999999 8776543
No 377
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=40.31 E-value=1.3e+02 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFF 52 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~ 52 (467)
||||++-.|++.| +|++.|++. |++|.++-.+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 6899988888777 467777776 999998865444
No 378
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=40.29 E-value=1.2e+02 Score=30.47 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.5
Q ss_pred ccEEEECCchhhHHHHHHHcCCCceee
Q 012277 114 VDCIVYDSILLWALDVAKKFGLLGAPF 140 (467)
Q Consensus 114 ~DlVI~D~~~~~~~~~A~~~giP~v~~ 140 (467)
+|++|.+. ....+|+++|+|++.+
T Consensus 373 ~dliiG~s---~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 373 IDVLIGNS---YGRRIAEKLGIPLIRI 396 (429)
T ss_pred CCEEEECc---hhHHHHHHcCCCEEEe
Confidence 79999995 4578999999999875
No 379
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=40.21 E-value=53 Score=28.96 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcChHHHHH-HHHHHHh-CCCEEEEEeCc
Q 012277 14 AHCLVLTYPGQGHINPLLQ-FSRRLQH-KGIKVTLVTTR 50 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~-la~~L~~-rGh~V~~~~~~ 50 (467)
|||+++-++.+||..-+.. +++.+.+ .|++|.++.-+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 5899888878899998776 5666666 89999887743
No 380
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=40.15 E-value=68 Score=26.06 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=26.3
Q ss_pred cEEEE-EcCCCCcC--hHHHHHHHHHHHhCCCEE-EEEeCcccc
Q 012277 14 AHCLV-LTYPGQGH--INPLLQFSRRLQHKGIKV-TLVTTRFFY 53 (467)
Q Consensus 14 ~~il~-~~~~~~GH--~~p~l~la~~L~~rGh~V-~~~~~~~~~ 53 (467)
||++| +..+-+|+ ..-.+.+|+++.++||+| .++-.....
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV 44 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGV 44 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHH
Confidence 57774 44444554 456778899999999984 555544433
No 381
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=39.95 E-value=62 Score=31.80 Aligned_cols=41 Identities=32% Similarity=0.348 Sum_probs=33.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
+++.-.++.|--.=++.++..++.+|.+|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45666778899999999999999999999999887644433
No 382
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=39.91 E-value=2.2e+02 Score=27.80 Aligned_cols=119 Identities=15% Similarity=0.272 Sum_probs=68.1
Q ss_pred hHHHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEe-c---
Q 012277 269 EACMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVS-W--- 344 (467)
Q Consensus 269 ~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~-~--- 344 (467)
+++.+.++....+.+-..|+||...+ .+++++++.|.+.+.+...... .+-..+. ..++..+++ |
T Consensus 5 ~~~~~~~~~y~~~~~~i~~~~shsaL------~I~~gAkeeGf~ti~v~~~~~~-~~y~~~~----~~De~i~v~~~~di 73 (358)
T PRK13278 5 EEILEILKKYDLDNITIATIGSHSSL------QILKGAKKEGFRTIAICKKKRE-VFYKRFP----VADEFIIVDDFSDI 73 (358)
T ss_pred HHHHHHHHhcCcccceEEEEecccHH------HHHHHHHHCCCeEEEEEeCCCc-ccccccc----ccceEEEEcchhhh
Confidence 44667776654445567788888742 3788999999998888766432 1111111 335555554 6
Q ss_pred cch---HhhhcccccceeeecCChhhH--HHHHH-hCCCeeecC----CccchhhHHHHHHhHhccc
Q 012277 345 CPQ---LEVLAHEATGCFVTHCGWNST--MEALS-LGVPMVAMP----QWSDQSTNAKYILDVWKTG 401 (467)
Q Consensus 345 ~p~---~~lL~~~~~~~~I~HGG~~t~--~eal~-~GvP~v~~P----~~~DQ~~na~~v~~~~G~G 401 (467)
.+. ..+.+.-.+ +|.||..... .+.+. .|+|+..-+ +..|...--+.++++ |+-
T Consensus 74 ~~~~~~~~l~~~~~i--iIp~gs~v~y~~~d~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~a-GIp 137 (358)
T PRK13278 74 LNEAVQEKLREMNAI--LIPHGSFVAYLGLENVEKFKVPMFGNREILRWEADRDKERKLLEEA-GIR 137 (358)
T ss_pred cCHHHHHHHhhcCcE--EEeCCCcceeecHHHHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHc-CCC
Confidence 222 234444445 8999765422 33344 788843322 344666555667777 544
No 383
>PRK08322 acetolactate synthase; Reviewed
Probab=39.67 E-value=65 Score=33.53 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=22.5
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeecC
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAMP 382 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P 382 (467)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGV--CLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEE--EEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3455 89888744 7899999999999974
No 384
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=39.50 E-value=56 Score=34.25 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=22.9
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeecC
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAMP 382 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P 382 (467)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 99998866 5789999999999974
No 385
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=39.49 E-value=26 Score=32.10 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=22.9
Q ss_pred cccceeeecCChhhHHHHHHh----CCCeeecCC
Q 012277 354 EATGCFVTHCGWNSTMEALSL----GVPMVAMPQ 383 (467)
Q Consensus 354 ~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~ 383 (467)
+|+ +|+-||-||++.|++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 577 9999999999998765 678887653
No 386
>PRK07004 replicative DNA helicase; Provisional
Probab=39.35 E-value=1.2e+02 Score=30.82 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=33.6
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~ 56 (467)
|++...|+.|-..-++.+|...+ +.|+.|.|++-+...+.+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 55777889999999999998886 469999999988766554
No 387
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=39.33 E-value=68 Score=31.45 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
+.|||||. |+.|.+- ..|++.|.++||+|+.+...
T Consensus 20 ~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEec
Confidence 56888876 5556554 46789999999999998753
No 388
>PRK11823 DNA repair protein RadA; Provisional
Probab=39.33 E-value=70 Score=32.37 Aligned_cols=41 Identities=32% Similarity=0.319 Sum_probs=34.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
+++.-.++.|--.=++.++..++++|++|.|++.+...+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45777778899999999999999899999999987655544
No 389
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=39.18 E-value=70 Score=25.42 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
||++...++.|-..-...+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999888776
No 390
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=39.09 E-value=53 Score=28.63 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
|||.++ |.||+- +.+|-.|+++||+|+.+=.+.
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 577777 556664 677888999999999886654
No 391
>CHL00194 ycf39 Ycf39; Provisional
Probab=38.88 E-value=49 Score=31.56 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
|||+|+ |+.|.+-. .+++.|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~iG~--~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTLGR--QIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHHHH--HHHHHHHHCCCeEEEEEcC
Confidence 467764 55565543 4678899999999999864
No 392
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.87 E-value=41 Score=28.76 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=52.3
Q ss_pred cCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchh
Q 012277 20 TYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQT 99 (467)
Q Consensus 20 ~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (467)
-.|++|++-. .++++|.++||+|+.++..... ..+ ..++.....+ +.+ .
T Consensus 3 V~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~--~~~---~~~~~~~~~d--~~d--------~-------------- 51 (183)
T PF13460_consen 3 VFGATGFVGR--ALAKQLLRRGHEVTALVRSPSK--AED---SPGVEIIQGD--LFD--------P-------------- 51 (183)
T ss_dssp EETTTSHHHH--HHHHHHHHTTSEEEEEESSGGG--HHH---CTTEEEEESC--TTC--------H--------------
T ss_pred EECCCChHHH--HHHHHHHHCCCEEEEEecCchh--ccc---ccccccceee--ehh--------h--------------
Confidence 3456666654 4899999999999999976542 221 2456665554 322 0
Q ss_pred HHHHHHHhcCCCCCccEEEECCc--------hhhHHHHHHHcCCCceeeeccc
Q 012277 100 LTELVEKMNGSDSPVDCIVYDSI--------LLWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 100 l~~~i~~l~~~~~~~DlVI~D~~--------~~~~~~~A~~~giP~v~~~~~~ 144 (467)
..+.+.+. +.|.||.-.. .-....+++..|++.+++.+..
T Consensus 52 -~~~~~al~----~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 52 -DSVKAALK----GADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp -HHHHHHHT----TSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred -hhhhhhhh----hcchhhhhhhhhcccccccccccccccccccccceeeecc
Confidence 11222222 2577777654 1223455677899987765543
No 393
>PRK06841 short chain dehydrogenase; Provisional
Probab=38.70 E-value=96 Score=28.12 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
+.++|+|. |+.|.+ -..+++.|.++|++|..+....
T Consensus 14 ~~k~vlIt--Gas~~I--G~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 14 SGKVAVVT--GGASGI--GHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeCCH
Confidence 34455554 344444 3677999999999998887654
No 394
>PLN02727 NAD kinase
Probab=38.63 E-value=62 Score=35.52 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=41.2
Q ss_pred hhhcccccceeeecCChhhHHHHHHh----CCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcC
Q 012277 349 EVLAHEATGCFVTHCGWNSTMEALSL----GVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEG 422 (467)
Q Consensus 349 ~lL~~~~~~~~I~HGG~~t~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~ 422 (467)
++...+|+ +|+=||-||++.|+.. ++|++.+-.. ++ |... ++..+++.+.|.+++++
T Consensus 739 el~~~~DL--VIvLGGDGTlLrAar~~~~~~iPILGINlG-----------rL---GFLT-di~~ee~~~~L~~Il~G 799 (986)
T PLN02727 739 DLHERVDF--VACLGGDGVILHASNLFRGAVPPVVSFNLG-----------SL---GFLT-SHYFEDFRQDLRQVIHG 799 (986)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEeCC-----------Cc---cccc-cCCHHHHHHHHHHHHcC
Confidence 34446788 9999999999999775 5787766422 12 2111 56788899999999976
No 395
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=38.63 E-value=3.9e+02 Score=29.33 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=103.8
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccC--------cCCccccccccCCCcEEE---EeccchH
Q 012277 280 KESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQA--------KLPKKFSDETLTSHKSLV---VSWCPQL 348 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--------~l~~~~~~~~~~~~~v~~---~~~~p~~ 348 (467)
+..++|+.+=.+...|.......++.|.+.|.+++.++|..... .+..+-.+ ....... .+-++..
T Consensus 570 E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed---~~~~~~TG~efD~ls~~ 646 (972)
T KOG0202|consen 570 ESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDED---VSSMALTGSEFDDLSDE 646 (972)
T ss_pred ccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCcc---ccccccchhhhhcCCHH
Confidence 44589998877776677888889999999999999999875210 01110000 0001110 1223333
Q ss_pred hhhcccccceeeecCCh---hhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcch
Q 012277 349 EVLAHEATGCFVTHCGW---NSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERG 425 (467)
Q Consensus 349 ~lL~~~~~~~~I~HGG~---~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~ 425 (467)
++-..++-..++..+-- --+.|||..-.-++.+ ++|--.-|-.+..+ .+|+.+..-..+.=.+|-+=+|.|+
T Consensus 647 ~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAMG~~GTdVaKeAsDMVL~DD-- 721 (972)
T KOG0202|consen 647 ELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAMGISGTDVAKEASDMVLADD-- 721 (972)
T ss_pred HHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceeecCCccHhhHhhhhcEEecC--
Confidence 22222222224444432 4578888888777665 58888888899999 9998887334445556667778887
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 012277 426 KELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACS 463 (467)
Q Consensus 426 ~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~ 463 (467)
.|.. +-+++++|-+..+++..||+.|.++
T Consensus 722 -nFst--------IvaAVEEGr~IynNik~Fir~~lSs 750 (972)
T KOG0202|consen 722 -NFST--------IVAAVEEGRAIYNNIKNFIRYLLSS 750 (972)
T ss_pred -cHHH--------HHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 4433 2234566777788999999988754
No 396
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=38.51 E-value=20 Score=30.93 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=21.7
Q ss_pred cccccceeeecCChhhHHHHHHhCCCeeecCCcc
Q 012277 352 AHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWS 385 (467)
Q Consensus 352 ~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~ 385 (467)
..+++ +|+.||......... ++|+|-++...
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 55777 999999999888877 99999998754
No 397
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=38.49 E-value=1.1e+02 Score=31.88 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=22.6
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeecC
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAMP 382 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P 382 (467)
++.+ +++|.|-| .+++|...++|+|++.
T Consensus 64 ~~gv--~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGV--VLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 89988854 7899999999999973
No 398
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.38 E-value=69 Score=28.73 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
+++++|||. |+.|++- ..|++.|.++||+|+.++...
T Consensus 4 ~~~~~vlIt--Gasg~iG--~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALVT--GAARGLG--RAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCCEEEEe--CCCchHH--HHHHHHHHHCCCeEEEEeCCC
Confidence 445577763 4456554 567888999999997766543
No 399
>PRK06988 putative formyltransferase; Provisional
Probab=38.28 E-value=1.5e+02 Score=28.26 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
+|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 37999985543 2345567777889998877765
No 400
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=38.05 E-value=30 Score=32.72 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
|||+|+-.|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 478777665555 4578889999999999987
No 401
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=38.02 E-value=57 Score=30.46 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
+|.|+.-||-|-..-+..||.+|+++|++|.++=-+..
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 56677777889999999999999999999988855443
No 402
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=38.02 E-value=2.1e+02 Score=25.10 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCC--EEEEEeCccc-c---ccccCCCCCCCcceEecC
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGI--KVTLVTTRFF-Y---KSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh--~V~~~~~~~~-~---~~~~~~~~~~g~~~~~~~ 71 (467)
+||+|+..++.+-+ .++.+.+.+.++ +|.++.++.. . +.++ ..|+.+..++
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~----~~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISNKPDAYGLERAA----QAGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEECCccchHHHHHH----HcCCCEEEEC
Confidence 57888777554443 466666766655 6776545432 1 2233 4678777654
No 403
>PRK13604 luxD acyl transferase; Provisional
Probab=37.82 E-value=73 Score=30.31 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT 48 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (467)
+.+.+++++|..++-.-+..+|+.|.++|+.|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 446777777777777679999999999999998663
No 404
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.57 E-value=40 Score=34.19 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=36.7
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
...+||++...|+-+ ..=...|.+.|.++|++|.++.++....++.
T Consensus 68 l~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 68 LASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred cCCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 446789877665444 4478889999999999999999998777775
No 405
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=37.12 E-value=1.6e+02 Score=29.80 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
.++|+.++..+ ...+.+++.|.+-|-+|..+.+.
T Consensus 325 ~Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~ 358 (456)
T TIGR01283 325 KGKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQ 358 (456)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeee
Confidence 35677665433 45578888899999999887654
No 406
>PRK13054 lipid kinase; Reviewed
Probab=37.02 E-value=83 Score=29.79 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceeeecCChhhHHHHHHh--
Q 012277 297 EEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSL-- 374 (467)
Q Consensus 297 ~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~-- 374 (467)
+.+..+...|++.+..+.+........ ..-+-........++ +|..||-||+.|++..
T Consensus 18 ~~~~~~~~~l~~~g~~~~v~~t~~~~~------------------a~~~a~~~~~~~~d~--vvv~GGDGTl~evv~~l~ 77 (300)
T PRK13054 18 EELREAVGLLREEGHTLHVRVTWEKGD------------------AARYVEEALALGVAT--VIAGGGDGTINEVATALA 77 (300)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCc------------------HHHHHHHHHHcCCCE--EEEECCccHHHHHHHHHH
Q ss_pred ------CCCeeecCCc
Q 012277 375 ------GVPMVAMPQW 384 (467)
Q Consensus 375 ------GvP~v~~P~~ 384 (467)
.+|+-++|..
T Consensus 78 ~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 78 QLEGDARPALGILPLG 93 (300)
T ss_pred hhccCCCCcEEEEeCC
No 407
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=36.97 E-value=2e+02 Score=27.17 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=33.1
Q ss_pred CcEE-EEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 13 LAHC-LVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 13 ~~~i-l~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
.+++ .|.-.+|.|--.-+..++..|.++|++|.++..+...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3444 4666678899999999999999999999998876544
No 408
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=36.90 E-value=1.1e+02 Score=25.32 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHhhcCCCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEe
Q 012277 271 CMKWLNDRAKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVR 318 (467)
Q Consensus 271 l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 318 (467)
+.+..+......+|++++||.-....+.++++++.+. .+.+++++..
T Consensus 41 l~~~~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 41 IRQLKDSGKLRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred HHHHHHcCCCCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3333333234578999999998777888888888875 3567776654
No 409
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=36.86 E-value=2.5e+02 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
|.+.-.++.|--..+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 566777788999999999999999999999988664
No 410
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=36.84 E-value=55 Score=32.62 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=30.7
Q ss_pred CcEEE-EEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 13 LAHCL-VLT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 13 ~~~il-~~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
.++|+ |.+ -||.|-..-++.||..|+.+|++|.++=.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 45665 443 3566999999999999999999999885544
No 411
>PRK06756 flavodoxin; Provisional
Probab=36.67 E-value=67 Score=26.61 Aligned_cols=36 Identities=3% Similarity=0.109 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcChHH-HHHHHHHHHhCCCEEEEEeC
Q 012277 14 AHCLVLTYPGQGHINP-LLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p-~l~la~~L~~rGh~V~~~~~ 49 (467)
|||+++-.+.+||.-- ...|++.|.++|++|.+.-.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 5888766668898876 45578889889999977643
No 412
>PLN00016 RNA-binding protein; Provisional
Probab=36.65 E-value=50 Score=32.43 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=25.9
Q ss_pred CcEEEEEcC--CCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 13 LAHCLVLTY--PGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 13 ~~~il~~~~--~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
+++|||+.. |+.|.+- ..|++.|.++||+|+.++...
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 457887622 3445554 456789999999999998754
No 413
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.62 E-value=1.7e+02 Score=23.47 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=35.9
Q ss_pred hHHHHHhhcCCCCceEEEeecccccC-CHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCc
Q 012277 269 EACMKWLNDRAKESVVYVSYGSFVEL-KAEEMEELAWGLKSSDQHFLWVVRESEQAKLPK 327 (467)
Q Consensus 269 ~~l~~~l~~~~~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~ 327 (467)
.+..+|+... -+++|.|-.... +++.+..+++.|.+.+.-.+.+..+.....+|+
T Consensus 34 ~d~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~ 89 (123)
T PF07905_consen 34 PDPSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPE 89 (123)
T ss_pred CCHHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCH
Confidence 3455677652 278888877655 677788899999999887665543332234444
No 414
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=36.54 E-value=1.2e+02 Score=31.90 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=22.4
Q ss_pred ccccceeeecCChh------hHHHHHHhCCCeeecC
Q 012277 353 HEATGCFVTHCGWN------STMEALSLGVPMVAMP 382 (467)
Q Consensus 353 ~~~~~~~I~HGG~~------t~~eal~~GvP~v~~P 382 (467)
++.+ +++|.|-| .+.+|...++|+|++.
T Consensus 68 ~~gv--~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGM--VIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEE--EEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 89998854 6788999999999985
No 415
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=36.45 E-value=82 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=30.3
Q ss_pred cEEE-EEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 14 AHCL-VLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 14 ~~il-~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
+|++ |.+.- +.|-..-...||..|+++|++|.++=.+...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 5655 54333 5588999999999999999999888665433
No 416
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=36.44 E-value=2.2e+02 Score=26.80 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe-CccccccccCCCCCCCcceEecCCCCCCCCCCCccCHH
Q 012277 8 PTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT-TRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIE 86 (467)
Q Consensus 8 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (467)
....+.+||+|+.++....+...+.-.+.=.-...=+.+++ .+.....++ ..|+.+..++.....
T Consensus 84 ~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~----~~gIp~~~~~~~~~~---------- 149 (286)
T PRK13011 84 HDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAA----WHGIPFHHFPITPDT---------- 149 (286)
T ss_pred eecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHH----HhCCCEEEeCCCcCc----------
Q ss_pred HHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCch-hhHHHHHHHcCCCceeeecc
Q 012277 87 AYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSIL-LWALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 87 ~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~-~~~~~~A~~~giP~v~~~~~ 143 (467)
.......+.+.+++.. +|+||.-.+. .....+-+.+.-..+-++++
T Consensus 150 ------~~~~~~~~~~~l~~~~-----~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 150 ------KPQQEAQVLDVVEESG-----AELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ------hhhhHHHHHHHHHHhC-----cCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 417
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=36.40 E-value=99 Score=33.90 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=45.3
Q ss_pred CcCHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc
Q 012277 406 IVKRDAIADCISEIL------EGERGKELRRNAGKWRKLAKEAVAKGGSSDSNIDEFVASLACSK 464 (467)
Q Consensus 406 ~~~~~~l~~~i~~vl------~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~l~~~~ 464 (467)
..+.+++.+.+..++ ++.+...-.++.+..++.+++++++|. +.+.|++++++|++..
T Consensus 442 ~~~~~~~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gA-s~eEI~rLm~eLR~A~ 505 (820)
T PF13779_consen 442 ARTDEALREVADLLWDLALRIEDGDLSDAERRLRAAQEALREALERGA-SDEEIARLMQELREAM 505 (820)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 568888888888875 466555677777788888888877765 4799999999999764
No 418
>PRK04946 hypothetical protein; Provisional
Probab=36.37 E-value=19 Score=31.30 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchH-hhhcccccceeeecCChhhH
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQL-EVLAHEATGCFVTHCGWNST 368 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~-~lL~~~~~~~~I~HGG~~t~ 368 (467)
.+.+..++..+...+.+.+.++.+.....|-.. +..|+.|. .|++-+++ =-.|||.|.+
T Consensus 109 ~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~------------V~~wL~q~~~V~af~~A--~~~~GG~GA~ 168 (181)
T PRK04946 109 KQELGALIAACRKEHVFCACVMHGHGKHILKQQ------------TPLWLAQHPDVMAFHQA--PKEWGGDAAL 168 (181)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHH------------HHHHHcCCchhheeecc--CcccCCceEE
Confidence 344555666666778887777766543322221 34688765 77777777 7889999865
No 419
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=36.33 E-value=1.2e+02 Score=31.93 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=22.4
Q ss_pred ccccceeeecCCh------hhHHHHHHhCCCeeecC
Q 012277 353 HEATGCFVTHCGW------NSTMEALSLGVPMVAMP 382 (467)
Q Consensus 353 ~~~~~~~I~HGG~------~t~~eal~~GvP~v~~P 382 (467)
++.+ +++|.|- +.+.+|...++|+|++.
T Consensus 63 ~~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 8888874 47899999999999973
No 420
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=36.28 E-value=46 Score=32.26 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHHh
Q 012277 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKM 107 (467)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 107 (467)
..+..|++.|.++|++|.+.+++.-.+..++ +. ...+..... . ... +. ....+.++...+
T Consensus 200 e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~------i~-~~~~~~~~~-------~---~~~-l~--g~~sL~el~ali 259 (348)
T PRK10916 200 YHYAELAQQLIDEGYQVVLFGSAKDHEAGNE------IL-AALNTEQQA-------W---CRN-LA--GETQLEQAVILI 259 (348)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCHHhHHHHHH------HH-Hhccccccc-------c---eee-cc--CCCCHHHHHHHH
Confidence 3578999999888999998887765544331 00 000000000 0 000 00 111344444444
Q ss_pred cCCCCCccEEEECCchhhHHHHHHHcCCCceeeec
Q 012277 108 NGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 108 ~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~ 142 (467)
.. .|++|+.. .....+|..+|+|+|.+..
T Consensus 260 ~~----a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 260 AA----CKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred Hh----CCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 42 58999885 3467899999999998865
No 421
>PRK08589 short chain dehydrogenase; Validated
Probab=36.10 E-value=97 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.085 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
|.++++.+ .|.+ -..+++.|+++|++|.++...
T Consensus 7 k~vlItGa-s~gI--G~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGA-STGI--GQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECC-CchH--HHHHHHHHHHCCCEEEEEeCc
Confidence 34444443 3333 367899999999999998765
No 422
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=35.71 E-value=48 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=26.9
Q ss_pred CCCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 10 SCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 10 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
..+..||+|+-.|.- ....++.|.+.||+|+++.+.
T Consensus 10 ~l~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 456778888755433 367889999999999999643
No 423
>PRK13695 putative NTPase; Provisional
Probab=35.67 E-value=1.9e+02 Score=24.61 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEE
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVT 45 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~ 45 (467)
|||++.-.++.|=-.-+..+++.|..+|+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 68898888888888878888899988898865
No 424
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=35.59 E-value=2.3e+02 Score=26.28 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCC
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYD 75 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 75 (467)
++||+|+..++...-. .+.++|.+.|++|.++......+... ....+....++.++.
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~---~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERK---SVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecccccccc---chhhCCEEEECCCCC
Confidence 4699998888875433 55789988999999887643222111 134678888887754
No 425
>PRK06321 replicative DNA helicase; Provisional
Probab=35.32 E-value=2.2e+02 Score=29.11 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=33.0
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHh-CCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQH-KGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~~ 56 (467)
|++-..|+.|-..-.+.+|...+. .|..|.|++-+.....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 456777889999999999999874 59999999987655544
No 426
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=35.21 E-value=1.4e+02 Score=29.41 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=25.8
Q ss_pred CcEEEEEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 13 LAHCLVLT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 13 ~~~il~~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
.++|.|+- .|..|. .+|+.|.++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 46888875 566664 5789999999999999864
No 427
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.21 E-value=70 Score=26.26 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=42.4
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecC
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~ 71 (467)
.+|++-+.++-+|-.----++..|...|++|..+......+.+.+.....+..++.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4789999999999999999999999999999999876554444321113345554443
No 428
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=35.18 E-value=82 Score=25.33 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=27.2
Q ss_pred EEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 012277 17 LVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT 48 (467)
Q Consensus 17 l~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (467)
+++..|..++-.-+..+++.|+++|+.|..+.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56677777778889999999999999999883
No 429
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=34.91 E-value=2.2e+02 Score=27.92 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeCC
Q 012277 296 AEEMEELAWGLKSSDQHFLWVVRES 320 (467)
Q Consensus 296 ~~~~~~~~~al~~~~~~~i~~~~~~ 320 (467)
|-+++.++++|.+.|..+.+.+...
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 3457889999999999887776544
No 430
>PRK05748 replicative DNA helicase; Provisional
Probab=34.82 E-value=1.8e+02 Score=29.42 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=33.8
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~ 56 (467)
|++-..|+.|-..-.+.++...+ +.|+.|.|++.+...+.+
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 56777889999999999999886 459999999988766544
No 431
>PRK04940 hypothetical protein; Provisional
Probab=34.42 E-value=99 Score=26.84 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=25.4
Q ss_pred ccEEEECCch-hhHHHHHHHcCCCceeeecc
Q 012277 114 VDCIVYDSIL-LWALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 114 ~DlVI~D~~~-~~~~~~A~~~giP~v~~~~~ 143 (467)
+++||...+. .||..+|+++|+|.|.+.+.
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 4788888777 88999999999999998654
No 432
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.40 E-value=17 Score=32.47 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=64.4
Q ss_pred EEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeCccccccc-cCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHH
Q 012277 17 LVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL-HRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQ 94 (467)
Q Consensus 17 l~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (467)
-++..- +..|+...+.++..++.||=.+.|+++....... ++. ........+...+....++.... .+..+.+
T Consensus 83 ~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~a--A~r~~gy~~~~~w~~G~lTN~~~---l~g~~~~ 157 (251)
T KOG0832|consen 83 HIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERA--ARRAGGYSHNRKWLGGLLTNARE---LFGALVR 157 (251)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHH--HHHhcCceeeeeeccceeecchh---hcccccc
Confidence 334333 4478899999999999999999999987655433 211 11122223333333311111111 1111111
Q ss_pred hCchhHHHHHHHhcCCCCCccEEEE-CCch-hhHHHHHHHcCCCceeeeccch
Q 012277 95 IGPQTLTELVEKMNGSDSPVDCIVY-DSIL-LWALDVAKKFGLLGAPFLTQSC 145 (467)
Q Consensus 95 ~~~~~l~~~i~~l~~~~~~~DlVI~-D~~~-~~~~~~A~~~giP~v~~~~~~~ 145 (467)
. ...+.+... +..+..+ |+||. |... ..+..=|.+++||+|.+.-+.|
T Consensus 158 ~-~~~~pd~~~-f~~t~~~-D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 158 K-FLSLPDALC-FLPTLTP-DLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred c-ccCCCccee-ecccCCc-ceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 0 000111111 1122233 77766 5554 6677889999999999877664
No 433
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.39 E-value=74 Score=27.21 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
.+..+|++++.++. .=---+.+|+.|.++|++|+++..
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 34568888887753 223467889999999999999443
No 434
>PRK04296 thymidine kinase; Provisional
Probab=34.37 E-value=2.1e+02 Score=24.90 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=29.6
Q ss_pred EEEEEcCC-CCcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 15 HCLVLTYP-GQGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 15 ~il~~~~~-~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
.|.+++.+ +.|-..-++.++..+..+|.+|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46666666 889999999999999999999998844
No 435
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.35 E-value=1.4e+02 Score=27.31 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=21.9
Q ss_pred EEEEEcCCC-CcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 15 HCLVLTYPG-QGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 15 ~il~~~~~~-~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
|+++++.++ .+- =-.++|+.|+++|++|.+...
T Consensus 8 k~~lItGa~~s~G--IG~a~a~~la~~G~~v~l~~r 41 (256)
T PRK07889 8 KRILVTGVITDSS--IAFHVARVAQEQGAEVVLTGF 41 (256)
T ss_pred CEEEEeCCCCcch--HHHHHHHHHHHCCCEEEEecC
Confidence 455555542 222 235689999999999988764
No 436
>PRK06182 short chain dehydrogenase; Validated
Probab=34.16 E-value=1.3e+02 Score=27.61 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=21.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
.++++. +.|.+ -..+++.|.++||+|..+...
T Consensus 5 ~vlItG-asggi--G~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 5 VALVTG-ASSGI--GKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred EEEEEC-CCChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 333443 34444 345889999999999887654
No 437
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=34.05 E-value=1.2e+02 Score=29.34 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCccccc--cccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHH
Q 012277 27 INPLLQFSRRLQHKGIKVTLVTTRFFYK--SLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELV 104 (467)
Q Consensus 27 ~~p~l~la~~L~~rGh~V~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 104 (467)
..-+..|++.|.++|.+|.+++.+...+ .+++ +.- .... . . ..+ + .....+.++.
T Consensus 199 ~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~------i~~-----~~~~-~-----~---~~~-l--~g~~sL~el~ 255 (344)
T TIGR02201 199 NDRFSALIDALHARGYEVVLTSGPDKDELAMVNE------IAQ-----GCQT-P-----R---VTS-L--AGKLTLPQLA 255 (344)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHH------HHh-----hCCC-C-----c---ccc-c--CCCCCHHHHH
Confidence 3466789999988899999887654222 1220 000 0000 0 0 000 0 0111344444
Q ss_pred HHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeec
Q 012277 105 EKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 105 ~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~ 142 (467)
..+.. .|++|+.. .....+|..+|+|+|.+..
T Consensus 256 ali~~----a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 256 ALIDH----ARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHh----CCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 44443 58999985 4578899999999998865
No 438
>PRK11269 glyoxylate carboligase; Provisional
Probab=33.63 E-value=1.3e+02 Score=31.80 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.4
Q ss_pred eeecCC------hhhHHHHHHhCCCeeecC
Q 012277 359 FVTHCG------WNSTMEALSLGVPMVAMP 382 (467)
Q Consensus 359 ~I~HGG------~~t~~eal~~GvP~v~~P 382 (467)
++.|.| .+.+++|...++|+|++.
T Consensus 72 ~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 72 CIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 777767 678999999999999974
No 439
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=33.62 E-value=65 Score=25.49 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=31.1
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
++..+.++..|......++..|.++|++|.++....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCC
Confidence 567777888999999999999999999999996543
No 440
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=33.52 E-value=2.8e+02 Score=22.99 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhC--CCEEEEEeCccccccccCCCCCC-CcceEecCCCCCCCCCCCccCHHHHH
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHK--GIKVTLVTTRFFYKSLHRDSSSS-SIPLEAISDGYDEGGYAQAESIEAYL 89 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (467)
+|+|++... -.+=.-++.+++.|.+. ||++ +++. .-.+.++ .. |+.+..+-.+ + . +
T Consensus 4 ~~~v~lsv~--d~dK~~l~~~a~~l~~ll~Gf~l-~AT~-gTa~~L~----~~~Gi~v~~vi~~--~--~---g------ 62 (142)
T PRK05234 4 RKRIALIAH--DHKKDDLVAWVKAHKDLLEQHEL-YATG-TTGGLIQ----EATGLDVTRLLSG--P--L---G------ 62 (142)
T ss_pred CcEEEEEEe--ccchHHHHHHHHHHHHHhcCCEE-EEeC-hHHHHHH----hccCCeeEEEEcC--C--C---C------
Confidence 567766553 34556788999999999 9995 4555 4455555 34 7877665211 0 0 0
Q ss_pred HHHHHhCchhHHHHHHHhcCCCCCccEEEECC--chh--------hHHHHHHHcCCCceee
Q 012277 90 ERFWQIGPQTLTELVEKMNGSDSPVDCIVYDS--ILL--------WALDVAKKFGLLGAPF 140 (467)
Q Consensus 90 ~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~--~~~--------~~~~~A~~~giP~v~~ 140 (467)
....+.++++ . ..+|+||.-+ ... .-.-+|-..+||++.-
T Consensus 63 ------g~~~i~~~I~---~--g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 63 ------GDQQIGALIA---E--GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ------CchhHHHHHH---c--CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 1112223333 2 4589999843 321 2345588889997764
No 441
>PRK05693 short chain dehydrogenase; Provisional
Probab=33.48 E-value=1.4e+02 Score=27.56 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
|.++++. +.|-+- ..+++.|.++|++|+..+..
T Consensus 2 k~vlItG-asggiG--~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 2 PVVLITG-CSSGIG--RALADAFKAAGYEVWATARK 34 (274)
T ss_pred CEEEEec-CCChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 3444444 334333 46788999999999887653
No 442
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=33.37 E-value=96 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCc--ChHHHHHHHHHHHh
Q 012277 13 LAHCLVLTYPGQG--HINPLLQFSRRLQH 39 (467)
Q Consensus 13 ~~~il~~~~~~~G--H~~p~l~la~~L~~ 39 (467)
|||||+.-++-+| ..||...++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 4689987666554 68999999999954
No 443
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=33.36 E-value=57 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
+++|.++-.|++| -+||+.|+++||+|++.....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 3578888888887 478999999999999999753
No 444
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=33.30 E-value=54 Score=31.35 Aligned_cols=41 Identities=7% Similarity=-0.002 Sum_probs=32.2
Q ss_pred cEEEEEcCC--CC-cChHHHHHHHHHHHhCCCEEEEEeCccccc
Q 012277 14 AHCLVLTYP--GQ-GHINPLLQFSRRLQHKGIKVTLVTTRFFYK 54 (467)
Q Consensus 14 ~~il~~~~~--~~-GH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 54 (467)
|||+|+.-+ .. -+..-+..|.++.++|||+|.++......-
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~ 44 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSV 44 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEE
Confidence 578876654 22 466788999999999999999999976553
No 445
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=33.28 E-value=37 Score=32.78 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
|||.|+-.|..| ..+|..|+++||+|+++......+.+.
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~ 41 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELR 41 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHH
Confidence 689988666655 357888999999999998754333333
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.21 E-value=97 Score=22.63 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEe
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVT 48 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~ 48 (467)
+++...+|.|--.-...++..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666678999999999999999999998887
No 447
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=33.05 E-value=41 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=20.6
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 25 GHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
|=-..+-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 344567789999999999999999864
No 448
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=33.01 E-value=74 Score=32.07 Aligned_cols=36 Identities=31% Similarity=0.228 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
.+||+++-.|..| +++++.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 7899999999888 89999999999999999866655
No 449
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=32.99 E-value=4.4e+02 Score=25.12 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=59.3
Q ss_pred EEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhC
Q 012277 17 LVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIG 96 (467)
Q Consensus 17 l~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (467)
+++..+..|.-.-++..++...++|.+|..+|......... ...|..+..+|.+... ......-.......+....
T Consensus 69 lvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~g~L~~~a---~~~~~~~i~vP~~~~~-R~s~~~~~~~~l~~l~~~~ 144 (308)
T TIGR02128 69 LLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGGRLEEMA---KERGLDVIKIPKGLQP-RAAFPYLLTPLILMLIKPL 144 (308)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCCcHHHHHH---HhcCCeEEEcCCCCCC-eeeHHHHHHHHHHHHHHHc
Confidence 44444445666667777888889999999888643222222 1347788888876554 2211111222222222222
Q ss_pred chhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcC--CCceeeec
Q 012277 97 PQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFG--LLGAPFLT 142 (467)
Q Consensus 97 ~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~g--iP~v~~~~ 142 (467)
...+....+.+. . +|. +.+.-.+..+|.++. +|++.-++
T Consensus 145 g~d~~~~~~~l~---~-~~~---~~~~n~Ak~LA~~l~~~~pvi~~~~ 185 (308)
T TIGR02128 145 GIDIEEAELLEG---G-LDT---PKLKALAKRLAEEIYNRIPVIYSSS 185 (308)
T ss_pred CCChHHHHHHhc---C-Ccc---ccccCHHHHHHHHhhCCCCEEEeCC
Confidence 223334433333 2 242 333345666776663 77666543
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=32.97 E-value=80 Score=32.04 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=33.7
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
+++.-.++.|--.=++.++..++++|++|.|++.++....+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 45677778899999999999999999999999987655443
No 451
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=32.84 E-value=2.7e+02 Score=29.38 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=30.1
Q ss_pred ecCChhhHHHHHHhCC--Cee--ecCC-ccchhhHHHHHHhHhccccccCCcCHHHHHHHHHHHh
Q 012277 361 THCGWNSTMEALSLGV--PMV--AMPQ-WSDQSTNAKYILDVWKTGLKFPIVKRDAIADCISEIL 420 (467)
Q Consensus 361 ~HGG~~t~~eal~~Gv--P~v--~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl 420 (467)
.+||+|+...+..... |+. .+|. +.+........++. | ++++.|.+++.+++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~-G-------l~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRN-H-------LTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHH-C-------cCHHHHHHHHHHHh
Confidence 4699988766655443 333 3444 22322233333334 4 68899988887765
No 452
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=32.80 E-value=3e+02 Score=27.26 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=67.9
Q ss_pred EEeccchHhhhcccccceeeecCChhhHHHHHHhCCCeeecCCccchhhHHHHH----HhHhccccccCCcCHHHHHHHH
Q 012277 341 VVSWCPQLEVLAHEATGCFVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYI----LDVWKTGLKFPIVKRDAIADCI 416 (467)
Q Consensus 341 ~~~~~p~~~lL~~~~~~~~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v----~~~~G~G~~l~~~~~~~l~~~i 416 (467)
+.+..+-.++|...|+ +||- =.....|.+...+||+..-...||+...+=. +.. .=|.. --+.+++.++|
T Consensus 274 vs~~~di~dll~~sDi--LITD-ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~-~Pg~~--~~~~~~li~ai 347 (388)
T COG1887 274 VSDNADINDLLLVSDI--LITD-YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFE-APGEV--VETQEELIDAI 347 (388)
T ss_pred cccchhHHHHHhhhCE--EEee-chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhc-CCccc--cccHHHHHHHH
Confidence 3356788899999999 9996 3456789999999999987777777222200 000 11222 34678888888
Q ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Q 012277 417 SEILEGERGKELRRNAGKWRKLAKEAVAKGGSSDSNI 453 (467)
Q Consensus 417 ~~vl~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 453 (467)
...+.++ ..+.++.+...+++.+. +.|.++.+.+
T Consensus 348 ~~~~~~~--~~~~~k~~~~~~~~~~~-~dg~ss~ri~ 381 (388)
T COG1887 348 KPYDEDG--NYDLEKLRVFNDKFNSY-EDGRSSERIL 381 (388)
T ss_pred Hhhhccc--chhHHHHHHHHHhhccc-ccccHHHHHH
Confidence 8888754 25666677777777654 4454444333
No 453
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.58 E-value=2.6e+02 Score=27.46 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCcChHHHHHHHHHHHhCC-------CEEEEEeCcc
Q 012277 11 CKLAHCLVLTYPGQGHINPLLQFSRRLQHKG-------IKVTLVTTRF 51 (467)
Q Consensus 11 ~~~~~il~~~~~~~GH~~p~l~la~~L~~rG-------h~V~~~~~~~ 51 (467)
++.+||.|+-.|++| -+||..|.+.| |+|++.+...
T Consensus 9 ~~~~ki~ViGaG~wG-----tAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 9 CGPLKVSVIGSGNWG-----SAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred cCCCeEEEECCCHHH-----HHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 346799999888877 46889999887 8999998765
No 454
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.48 E-value=73 Score=29.66 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
.|.|+.-||.|-..-+..||-+|+++|++|.++=-+
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 455676677799999999999999999999998443
No 455
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.44 E-value=2e+02 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=19.5
Q ss_pred ccEEEECCchhhHHHHHHHcCCCceee
Q 012277 114 VDCIVYDSILLWALDVAKKFGLLGAPF 140 (467)
Q Consensus 114 ~DlVI~D~~~~~~~~~A~~~giP~v~~ 140 (467)
||++|.+. ....+|+++|+|++..
T Consensus 357 pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 357 ADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred CCEEEECC---cchhhHHhcCCCEEEc
Confidence 79999994 3457899999998854
No 456
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=32.44 E-value=91 Score=25.60 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=33.4
Q ss_pred cEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 14 AHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
+|.. ++.++..--+.+..-++...+..|++|+++.+---...+.
T Consensus 3 ~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~ 47 (137)
T COG2210 3 KKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALR 47 (137)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhh
Confidence 3555 4555566889999999999999999999998844444444
No 457
>CHL00175 minD septum-site determining protein; Validated
Probab=32.43 E-value=87 Score=29.21 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=32.0
Q ss_pred CCCCCcEEEE-Ec-CCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 9 TSCKLAHCLV-LT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 9 ~~~~~~~il~-~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
...+++|++. ++ -||-|--.-...||.+|+++|++|.++=.+.
T Consensus 10 ~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 10 KSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred hcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3444567764 44 3466899999999999999999998885443
No 458
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=32.25 E-value=80 Score=28.64 Aligned_cols=36 Identities=14% Similarity=0.382 Sum_probs=30.0
Q ss_pred cEEE-EEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 14 AHCL-VLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 14 ~~il-~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
|+++ |+-..+.|-..-+..|++.|.++|++|-++-.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4666 55556779999999999999999999999953
No 459
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=32.23 E-value=88 Score=28.00 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 15 HCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 15 ~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
-+++.-.++.|--.-++.++..-+++|+.|.|++.+...+.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~ 60 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL 60 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 3456666788988888888877777899999999987666554
No 460
>PRK09165 replicative DNA helicase; Provisional
Probab=32.02 E-value=2e+02 Score=29.55 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=33.2
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhC---------------CCEEEEEeCcccccccc
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHK---------------GIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~r---------------Gh~V~~~~~~~~~~~~~ 57 (467)
|++...|+.|-..-.+.+|...+.+ |..|.|++-+.....+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 5677778889999999988888653 88999999887665543
No 461
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.01 E-value=1.1e+02 Score=22.67 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=36.0
Q ss_pred EEEEEcCCCC--cChHHHHHHHHHHHhCCCEEEEEeCc-cccccccCCCCCCCcceEecC
Q 012277 15 HCLVLTYPGQ--GHINPLLQFSRRLQHKGIKVTLVTTR-FFYKSLHRDSSSSSIPLEAIS 71 (467)
Q Consensus 15 ~il~~~~~~~--GH~~p~l~la~~L~~rGh~V~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 71 (467)
.|.++|.+.. .+..-...+++.|...|..|.+-... .....+.. ....|+.|..+-
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~-a~~~g~~~~iii 61 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFAD-ADLIGIPYRIVV 61 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhH-HHhcCCCEEEEE
Confidence 5777776543 46677899999999999999885433 22222221 224677766553
No 462
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.99 E-value=68 Score=29.09 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=30.8
Q ss_pred EEEEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 16 CLVLT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 16 il~~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
|.|.+ -||.|--.-...||..|+++|++|.++=.+..
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 44555 56779999999999999999999999887654
No 463
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.74 E-value=3.5e+02 Score=25.71 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=25.2
Q ss_pred EEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeC
Q 012277 284 VYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRE 319 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 319 (467)
|+++.|... ........++++|.+.|..+.+.+..
T Consensus 2 ~~~~~~~~g-G~~~~~~~la~~l~~~G~ev~v~~~~ 36 (350)
T cd03785 2 ILIAGGGTG-GHIFPALALAEELRERGAEVLFLGTK 36 (350)
T ss_pred EEEEecCch-hhhhHHHHHHHHHHhCCCEEEEEECC
Confidence 667776664 24456667899999999988777654
No 464
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.74 E-value=63 Score=30.74 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
.+|||.|+-.|..| .++|+.|.++||+|+++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 45789988666555 468999999999999887643
No 465
>PLN02240 UDP-glucose 4-epimerase
Probab=31.62 E-value=75 Score=30.61 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeC
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTT 49 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~ 49 (467)
.++|+|. |+.|.+-. .|++.|.++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~iG~--~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYIGS--HTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChHHH--HHHHHHHHCCCEEEEEeC
Confidence 4566664 56666644 457889999999998863
No 466
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.60 E-value=36 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=26.9
Q ss_pred cChHHHHHHHHHHHhCCCEEEEEeCcccccccc
Q 012277 25 GHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLH 57 (467)
Q Consensus 25 GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~ 57 (467)
-.+.-.+=++..|.++||+|++++++.....++
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 445566778999999999999999999888776
No 467
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=31.53 E-value=1.6e+02 Score=25.87 Aligned_cols=134 Identities=11% Similarity=0.039 Sum_probs=74.9
Q ss_pred CceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccceee
Q 012277 281 ESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGCFV 360 (467)
Q Consensus 281 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~~I 360 (467)
=|..++....+. .+.++=..+.+.+++.+..+++..|.= .-|...|.++ .+.++ +=-||++ .=
T Consensus 51 Ipt~~~~~k~~~-~r~~~d~~l~~~l~~~~~dlvvLAGyM--rIL~~~fl~~--~~grI----------lNIHPSL--LP 113 (200)
T COG0299 51 IPTVVLDRKEFP-SREAFDRALVEALDEYGPDLVVLAGYM--RILGPEFLSR--FEGRI----------LNIHPSL--LP 113 (200)
T ss_pred CCEEEeccccCC-CHHHHHHHHHHHHHhcCCCEEEEcchH--HHcCHHHHHH--hhcce----------EecCccc--cc
Confidence 345555555543 244556668899999988887776542 3344444433 22211 1127888 88
Q ss_pred ecCChhhHHHHHHhCCCeeecCCcc-c-hhhHHHHHHhHhccccccCCcCHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 012277 361 THCGWNSTMEALSLGVPMVAMPQWS-D-QSTNAKYILDVWKTGLKFPIVKRDAIADCISEILEGERGKELRRNAGKWRK 437 (467)
Q Consensus 361 ~HGG~~t~~eal~~GvP~v~~P~~~-D-Q~~na~~v~~~~G~G~~l~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~ 437 (467)
.++|..+..+|+.+|+..-.....+ | .-+-.--+.+. -+ ..+++-|.|.|.+.|.+.-.. -|-+..+.+.+
T Consensus 114 ~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~-~V-pv~~~Dt~etl~~RV~~~Eh~----lyp~~v~~~~~ 186 (200)
T COG0299 114 AFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQA-AV-PVLPGDTAETLEARVLEQEHR----LYPLAVKLLAE 186 (200)
T ss_pred CCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEE-ee-eecCCCCHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 9999999999999999986554332 2 22222222222 11 111133777777776663222 45555544444
No 468
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.53 E-value=1.3e+02 Score=27.82 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHH
Q 012277 27 INPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEK 106 (467)
Q Consensus 27 ~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 106 (467)
..-+..|++.|.++|++|.+++.+...+..++ +. ..++. ... . .+. ....+.+++..
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~------i~-~~~~~-~~~------------~-~~~--~~~~l~e~~~l 195 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAEE------IA-AALGG-PRV------------V-NLA--GKTSLRELAAL 195 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHHH------HH-HhcCC-Ccc------------c-cCc--CCCCHHHHHHH
Confidence 44788999999999999999887765444431 10 00000 000 0 000 01123344444
Q ss_pred hcCCCCCccEEEECCchhhHHHHHHHcCCCceeeecc
Q 012277 107 MNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQ 143 (467)
Q Consensus 107 l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~ 143 (467)
+.. .|++|+-. .....+|..+|+|++.+...
T Consensus 196 i~~----~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 196 LAR----ADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHh----CCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 442 58999865 35677888999999998653
No 469
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.52 E-value=66 Score=30.88 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
+|||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5789998666666 45788999999999999874
No 470
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=31.49 E-value=78 Score=27.29 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=57.7
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccce
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGC 358 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~ 358 (467)
.++.+-.+.+|.+. +.+++.++.+|.+++..-....... .+.+ . ...+.+.+++++.+|+
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~-----~---~~~~~~l~ell~~aDi-- 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKPEE---GADE-----F---GVEYVSLDELLAQADI-- 94 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHHHH---HHHH-----T---TEEESSHHHHHHH-SE--
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCChhh---hccc-----c---cceeeehhhhcchhhh--
Confidence 35667788888775 4577778888988776654321111 0000 0 1266788899999999
Q ss_pred eeecCChhhHHHHHHhCCCeeecCCccchhhHHHHHHhHhccccccC------CcCHHHHHHHH
Q 012277 359 FVTHCGWNSTMEALSLGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP------IVKRDAIADCI 416 (467)
Q Consensus 359 ~I~HGG~~t~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~------~~~~~~l~~~i 416 (467)
++.|.-.+. ......|++.+..+ +=|..+- -++.++|.+++
T Consensus 95 v~~~~plt~----------------~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL 141 (178)
T PF02826_consen 95 VSLHLPLTP----------------ETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDAL 141 (178)
T ss_dssp EEE-SSSST----------------TTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHH
T ss_pred hhhhhcccc----------------ccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHH
Confidence 998865432 13455677777777 6554432 44445554444
No 471
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.48 E-value=1.3e+02 Score=27.54 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=34.7
Q ss_pred cchHhhhc-ccccceeeecCChhh--HHHHHH--hCCCeeecCCccchhhHHHHHHhHhccccccC
Q 012277 345 CPQLEVLA-HEATGCFVTHCGWNS--TMEALS--LGVPMVAMPQWSDQSTNAKYILDVWKTGLKFP 405 (467)
Q Consensus 345 ~p~~~lL~-~~~~~~~I~HGG~~t--~~eal~--~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 405 (467)
.....|+. +||+ +|..++.+. ..+.+. .|+|++.++.......+...++.+ |..+.
T Consensus 65 ~n~E~i~~l~PDL--Ii~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~l---g~~~g 125 (262)
T cd01147 65 PNYEKIAALKPDV--VIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLL---GKVLG 125 (262)
T ss_pred CCHHHHHhcCCCE--EEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHH---HHHhC
Confidence 34445554 8998 988766554 556653 899999987543233445555555 55554
No 472
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=31.47 E-value=2e+02 Score=25.77 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=25.3
Q ss_pred chhHHHHHHHhcCCCCCccEEEECCch---hhHHHHHHHcCCCceee
Q 012277 97 PQTLTELVEKMNGSDSPVDCIVYDSIL---LWALDVAKKFGLLGAPF 140 (467)
Q Consensus 97 ~~~l~~~i~~l~~~~~~~DlVI~D~~~---~~~~~~A~~~giP~v~~ 140 (467)
...++.+++.+++ -.+.+.|..+ ..+..+|+.+|+|++.-
T Consensus 105 ~~~m~~vl~~l~~----~gl~FvDS~T~~~s~a~~~A~~~gvp~~~r 147 (213)
T PF04748_consen 105 REAMRWVLEVLKE----RGLFFVDSRTTPRSVAPQVAKELGVPAARR 147 (213)
T ss_dssp HHHHHHHHHHHHH----TT-EEEE-S--TT-SHHHHHHHCT--EEE-
T ss_pred HHHHHHHHHHHHH----cCCEEEeCCCCcccHHHHHHHHcCCCEEee
Confidence 3446777787774 2788888776 44899999999998873
No 473
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.17 E-value=2.1e+02 Score=27.15 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=54.6
Q ss_pred cEEEEEcCCCCc--C--hHHHHHHHHHHHhCCCEEEEEeC-ccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHH
Q 012277 14 AHCLVLTYPGQG--H--INPLLQFSRRLQHKGIKVTLVTT-RFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAY 88 (467)
Q Consensus 14 ~~il~~~~~~~G--H--~~p~l~la~~L~~rGh~V~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 88 (467)
..|++.+.++.. . ..-+..|++.|.++|.+|.+..+ +...+..++ +. ...+. .
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~------i~-----~~~~~-~---------- 237 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAER------IA-----EALPG-A---------- 237 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHH------HH-----hhCCC-C----------
Confidence 346666654331 2 23577899999888999887643 333222221 10 00000 0
Q ss_pred HHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeec
Q 012277 89 LERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 89 ~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~ 142 (467)
.+. ....+.++...+.. .|++|+.. .....+|..+|+|+|.+..
T Consensus 238 --~l~--g~~sL~el~ali~~----a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 238 --VVL--PKMSLAEVAALLAG----ADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred --eec--CCCCHHHHHHHHHc----CCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 000 11234444444443 58999885 3467888999999998865
No 474
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=31.16 E-value=1.4e+02 Score=27.04 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCc--C--hHHHHHHHHHHHhCCCEEEEEeCcccc--ccccCCCCCCCcc--eEecCCCCCCCCCCCccC
Q 012277 13 LAHCLVLTYPGQG--H--INPLLQFSRRLQHKGIKVTLVTTRFFY--KSLHRDSSSSSIP--LEAISDGYDEGGYAQAES 84 (467)
Q Consensus 13 ~~~il~~~~~~~G--H--~~p~l~la~~L~~rGh~V~~~~~~~~~--~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~ 84 (467)
+..|+|.+..+.. . ..-+..|++.|.++|.+|.+++++... +.+.+. ..+.. +..+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~--~~~~~~~~~~~~~------------ 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQI--AAGLQNPVINLAG------------ 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHH--HTTHTTTTEEETT------------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHH--HHhcccceEeecC------------
Confidence 3456666655442 2 233689999999999999888887762 222100 01111 122211
Q ss_pred HHHHHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCceeeeccc
Q 012277 85 IEAYLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGAPFLTQS 144 (467)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 144 (467)
...+.++..-+.. .|++|+.. .....+|..+|+|+|.+....
T Consensus 171 ------------~~~l~e~~ali~~----a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 ------------KTSLRELAALISR----ADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ------------TS-HHHHHHHHHT----SSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ------------CCCHHHHHHHHhc----CCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 0122333333332 58999875 447889999999999986543
No 475
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=31.11 E-value=2.1e+02 Score=23.27 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHHHHHhhCCCcEEEEEeCCccCcCC-ccccccccCCCcEEEEeccchH-hh-hcccccceeeecCChhhHHHHHHh---
Q 012277 301 ELAWGLKSSDQHFLWVVRESEQAKLP-KKFSDETLTSHKSLVVSWCPQL-EV-LAHEATGCFVTHCGWNSTMEALSL--- 374 (467)
Q Consensus 301 ~~~~al~~~~~~~i~~~~~~~~~~l~-~~~~~~~~~~~~v~~~~~~p~~-~l-L~~~~~~~~I~HGG~~t~~eal~~--- 374 (467)
.+.++..+.|.+++=++.... .+ ++..+. .-.....++..... .+ +..+++ .++.-||.||.-|....
T Consensus 3 a~~~ga~~~gG~viGi~p~~~---~~~~~~~~~--~~~~~~~~~~~~~Rk~~m~~~sda-~I~lPGG~GTl~El~~~~~~ 76 (133)
T PF03641_consen 3 AVAKGAKEAGGRVIGIIPEFL---FPFEEPPNP--YVTELIIVDDMFERKEIMIESSDA-FIALPGGIGTLDELFEALTL 76 (133)
T ss_dssp HHHHHHHHTTTTEEEEEETTG---TTTTTTCCT--TSSEEEEESSHHHHHHHHHHHESE-EEEES-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEecCcc---ccccccCCc--ccCceeEeCChHHHHHHHHHhCCE-EEEEecCCchHHHHHHHHHH
Confidence 456667777777776654421 11 111110 11233444444433 44 444443 47778899999887432
Q ss_pred ------CC-CeeecCC
Q 012277 375 ------GV-PMVAMPQ 383 (467)
Q Consensus 375 ------Gv-P~v~~P~ 383 (467)
.+ |++++-.
T Consensus 77 ~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 77 MQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHTTSSTS-EEEEEEC
T ss_pred HhhccccCCCEEEeCC
Confidence 34 9888753
No 476
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=31.07 E-value=1.3e+02 Score=30.19 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeC
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTT 49 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~ 49 (467)
..+||.++..+ ...+.+++.|. +-|-+|..+++
T Consensus 287 ~Gk~vai~~~~-----~~~~~la~~l~~elG~~v~~i~~ 320 (415)
T cd01977 287 KGKKVCIWTGG-----PKLWHWTKVIEDELGMQVVAMSS 320 (415)
T ss_pred CCCEEEEECCC-----chHHHHHHHHHHhcCCEEEEEEE
Confidence 35677775433 23688899996 78999988765
No 477
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=31.06 E-value=87 Score=25.91 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=29.2
Q ss_pred EEEEc-CCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccc
Q 012277 16 CLVLT-YPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSL 56 (467)
Q Consensus 16 il~~~-~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~ 56 (467)
|.|++ .++.|=..-.+.||..|+++|++|.++-........
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~ 44 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSL 44 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCc
Confidence 34555 566788889999999999999999998877655433
No 478
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.03 E-value=70 Score=29.16 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=27.0
Q ss_pred CCCCCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 8 PTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 8 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
....+.+++||. |+.|.+. ..+++.|.++||+|+.+...
T Consensus 6 ~~~~~~~~vlIt--Ga~g~iG--~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 6 LKPLDGLRVLVT--GGASGIG--RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred hhccCCCEEEEe--CCCCcHH--HHHHHHHHHCCCEEEEEeCC
Confidence 334556677765 3445553 66799999999999887754
No 479
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=30.89 E-value=2.6e+02 Score=26.03 Aligned_cols=96 Identities=10% Similarity=0.146 Sum_probs=51.9
Q ss_pred EEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHh
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQI 95 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (467)
|+++-.|+.|--.....|.+.|.+.|.+|.++...... +. .. . + ..... .+..+..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~----~~-~-y------------~~~~~----Ek~~R~~ 59 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--ID----RN-D-Y------------ADSKK----EKEARGS 59 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---T----TS-S-S--------------GGG----HHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cc----hh-h-h------------hchhh----hHHHHHH
Confidence 56788889999999999999999999999999865544 22 01 0 0 11111 1112222
Q ss_pred CchhHHHHHHHhcCCCCCccEEEECCchhh------HHHHHHHcCCCceeeec
Q 012277 96 GPQTLTELVEKMNGSDSPVDCIVYDSILLW------ALDVAKKFGLLGAPFLT 142 (467)
Q Consensus 96 ~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~------~~~~A~~~giP~v~~~~ 142 (467)
....+.+ .+. .. ++||.|..... ..-+|+..+.+++++..
T Consensus 60 l~s~v~r---~ls---~~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 60 LKSAVER---ALS---KD-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYC 105 (270)
T ss_dssp HHHHHHH---HHT---T--SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHH---hhc---cC-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 1122222 233 23 89999976522 47799999999887654
No 480
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=30.87 E-value=2.4e+02 Score=25.68 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=47.7
Q ss_pred CCCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhcccccce
Q 012277 279 AKESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHEATGC 358 (467)
Q Consensus 279 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~~~~~ 358 (467)
...+.|+.++=.......+...++++.|++.+..-++.++.....-+.- .+.+ .+..
T Consensus 143 ~G~G~ilAn~ReiP~~a~e~~~~il~~l~~~g~~Gil~iG~p~~~vlgv------------pv~~--------~~~G--- 199 (236)
T PF01995_consen 143 TGEGKILANFREIPMSAREKAEEILEKLEKAGFSGILEIGEPNEPVLGV------------PVEP--------GMVG--- 199 (236)
T ss_dssp -SSSEEEEEEEEEETTTHHHHHHHHHHH---T-TTEEEE--TT--BTTB---------------T--------TEEE---
T ss_pred CCCceEeeeeecCchhHHHHHHHHHHHhhhcccceeEEeCCCCCcccCC------------ccCC--------CeEE---
Confidence 4567888888877777889999999999999998888887643222211 0100 0122
Q ss_pred eeecCChhhHHHHHHhCCCeeecC
Q 012277 359 FVTHCGWNSTMEALSLGVPMVAMP 382 (467)
Q Consensus 359 ~I~HGG~~t~~eal~~GvP~v~~P 382 (467)
++.-||.|-+.-+.-+|.|+=+-+
T Consensus 200 iv~~GG~Npia~~~E~Gi~i~~~~ 223 (236)
T PF01995_consen 200 IVVIGGLNPIAAAVEAGIPIEIKA 223 (236)
T ss_dssp EEEE-TTHHHHHHHHTT---EEEE
T ss_pred EEEEecCcHHHHHHHcCCeeEeee
Confidence 566699999999999999986544
No 481
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=30.79 E-value=44 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=23.2
Q ss_pred cccceeeecCChhhHHHHHHh----C-----CCeeecCCcc
Q 012277 354 EATGCFVTHCGWNSTMEALSL----G-----VPMVAMPQWS 385 (467)
Q Consensus 354 ~~~~~~I~HGG~~t~~eal~~----G-----vP~v~~P~~~ 385 (467)
.+. +|.-||-||+.|++.. + +|+.++|...
T Consensus 50 ~d~--vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 50 FDR--VLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CCE--EEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 345 9999999999998642 3 6888899744
No 482
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=30.77 E-value=7.7 Score=21.05 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=13.5
Q ss_pred ChhhHHHHHHhCCCeee
Q 012277 364 GWNSTMEALSLGVPMVA 380 (467)
Q Consensus 364 G~~t~~eal~~GvP~v~ 380 (467)
|.|++.-+++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888899999888765
No 483
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=30.75 E-value=1.5e+02 Score=30.29 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecC--CCCCC
Q 012277 14 AHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS--DGYDE 76 (467)
Q Consensus 14 ~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~ 76 (467)
+++|+-..- =.-++.+++.|.+.|+++. .| +.-.+.++ ..|+.+..+. .++|+
T Consensus 5 ~~aLISVsD----K~~iv~lAk~L~~lGfeI~-AT-~GTak~L~----e~GI~v~~V~k~TgfpE 59 (513)
T PRK00881 5 KRALISVSD----KTGIVEFAKALVELGVEIL-ST-GGTAKLLA----EAGIPVTEVSDVTGFPE 59 (513)
T ss_pred CEEEEEEeC----cccHHHHHHHHHHCCCEEE-Ec-chHHHHHH----HCCCeeEEeecccCCch
Confidence 456654433 3457899999999999994 44 44555666 5788887775 24444
No 484
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=30.55 E-value=3.9e+02 Score=24.96 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcccc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFY 53 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~ 53 (467)
.-+|+++-.++.|-..-+..|+..|..+|+.|.+++.+.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 35788888888898888888999999899999999987654
No 485
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.42 E-value=1.9e+02 Score=26.37 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCEEEEEe
Q 012277 31 LQFSRRLQHKGIKVTLVT 48 (467)
Q Consensus 31 l~la~~L~~rGh~V~~~~ 48 (467)
..+|+.|.++|++|.+.+
T Consensus 22 ~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 22 AAICKELAEAGADIFFTY 39 (256)
T ss_pred HHHHHHHHHCCCeEEEEe
Confidence 789999999999998764
No 486
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=30.37 E-value=1.1e+02 Score=28.18 Aligned_cols=103 Identities=10% Similarity=0.054 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCC-CEEEEEeCccccccccC-CCCCCCcceEecCCCCCCCCCCCccCHHHHHHHHHHhCchhHHHHHHHh
Q 012277 30 LLQFSRRLQHKG-IKVTLVTTRFFYKSLHR-DSSSSSIPLEAISDGYDEGGYAQAESIEAYLERFWQIGPQTLTELVEKM 107 (467)
Q Consensus 30 ~l~la~~L~~rG-h~V~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 107 (467)
+-..++.|.+.+ .+|.+.++....+.... ......+-+..+|..-...++ .......+--....+.-..++++.
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~----~~~~iia~~GPfs~e~n~al~~~~ 193 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGF----PPKNIIAMQGPFSKELNRALFRQY 193 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCC----ChhhEEEEeCCCCHHHHHHHHHHc
Confidence 456677776676 88888887776666632 122345666666632211011 111111111222333445666665
Q ss_pred cCCCCCccEEEECCchhhH----HHHHHHcCCCceeee
Q 012277 108 NGSDSPVDCIVYDSILLWA----LDVAKKFGLLGAPFL 141 (467)
Q Consensus 108 ~~~~~~~DlVI~D~~~~~~----~~~A~~~giP~v~~~ 141 (467)
. .|+||+=...-.+ ..+|+.+|||+|.+-
T Consensus 194 ~-----i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 194 G-----IDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred C-----CCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 5 7999997554212 678999999999974
No 487
>PRK12361 hypothetical protein; Provisional
Probab=30.32 E-value=2e+02 Score=29.93 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=23.4
Q ss_pred ccccceeeecCChhhHHHHHH----hCCCeeecCC
Q 012277 353 HEATGCFVTHCGWNSTMEALS----LGVPMVAMPQ 383 (467)
Q Consensus 353 ~~~~~~~I~HGG~~t~~eal~----~GvP~v~~P~ 383 (467)
..++ +|--||-||+.|++. .++|+-++|.
T Consensus 297 ~~d~--Viv~GGDGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 297 GADI--VIACGGDGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred CCCE--EEEECCCcHHHHHHHHHhcCCCCEEEecC
Confidence 3466 999999999999863 4688888995
No 488
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=30.32 E-value=3e+02 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=23.6
Q ss_pred EEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEe
Q 012277 284 VYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVR 318 (467)
Q Consensus 284 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 318 (467)
|||+.|.... .......+++.|.+.|..+.+..+
T Consensus 3 i~~~~g~~~g-~~~~~~~La~~L~~~g~eV~vv~~ 36 (348)
T TIGR01133 3 VVLAAGGTGG-HIFPALAVAEELIKRGVEVLWLGT 36 (348)
T ss_pred EEEEeCccHH-HHhHHHHHHHHHHhCCCEEEEEeC
Confidence 6777776652 233445789999999988877764
No 489
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=30.19 E-value=65 Score=31.30 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=26.9
Q ss_pred CCCCcChHHHHHHHHHHHh-CCCEEEEEeCcc
Q 012277 21 YPGQGHINPLLQFSRRLQH-KGIKVTLVTTRF 51 (467)
Q Consensus 21 ~~~~GH~~p~l~la~~L~~-rGh~V~~~~~~~ 51 (467)
.--+|++..+..||+.|++ +|++|++.+.+.
T Consensus 8 IDNyGDIGV~WRLArqLa~e~g~~VrLwvDdl 39 (371)
T TIGR03837 8 VDNYGDIGVCWRLARQLAAEHGHQVRLWVDDL 39 (371)
T ss_pred ecCCcchHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 3467999999999999986 699999999763
No 490
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=30.17 E-value=1.9e+02 Score=29.51 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCccccc----cccCCCCCCCcceEecCCCCCCCCCCCccCHHH
Q 012277 12 KLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRFFYK----SLHRDSSSSSIPLEAISDGYDEGGYAQAESIEA 87 (467)
Q Consensus 12 ~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (467)
.+.|+.++..+ ...+++++.|.+-|-+|..+....... .+.. ..+-....+.+.-..
T Consensus 323 ~Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~---~~~~~~~v~~d~~~~----------- 383 (475)
T PRK14478 323 EGKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKE---LMGPDAHMIDDANPR----------- 383 (475)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHH---HcCCCcEEEeCCCHH-----------
Q ss_pred HHHHHHHhCchhHHHHHHHhcCCCCCccEEEECCchhhHHHHHHHcCCCce
Q 012277 88 YLERFWQIGPQTLTELVEKMNGSDSPVDCIVYDSILLWALDVAKKFGLLGA 138 (467)
Q Consensus 88 ~~~~~~~~~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~~~~A~~~giP~v 138 (467)
.+.+.++... +|++|.+ .....+|+++|||++
T Consensus 384 -----------e~~~~i~~~~-----pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 384 -----------ELYKMLKEAK-----ADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred -----------HHHHHHhhcC-----CCEEEec---CchhhhhhhcCCCEE
No 491
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.16 E-value=68 Score=28.68 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=21.0
Q ss_pred CcEEEE--EcCCCCcChHHHHHHHHHHHhCCCEEEEE
Q 012277 13 LAHCLV--LTYPGQGHINPLLQFSRRLQHKGIKVTLV 47 (467)
Q Consensus 13 ~~~il~--~~~~~~GH~~p~l~la~~L~~rGh~V~~~ 47 (467)
..+||+ ++.||-|| +|++++++.|+.|.-.
T Consensus 7 ~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGY-----ALAKEFARNGYLVYAT 38 (289)
T ss_pred CCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEE
Confidence 446665 34445566 6899999999998543
No 492
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=30.15 E-value=1.1e+02 Score=27.41 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.5
Q ss_pred cEEEEEcCC----CCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 14 AHCLVLTYP----GQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 14 ~~il~~~~~----~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
+||+|+..+ ......=++.--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 478865541 11245556666788999999999999854
No 493
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=30.09 E-value=4e+02 Score=23.83 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCcc
Q 012277 13 LAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTRF 51 (467)
Q Consensus 13 ~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~~ 51 (467)
.+++++. |+.|.+ -..+++.|.++|++|+.+....
T Consensus 8 ~k~vlIt--Gas~~i--G~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVT--GAAQGI--GYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCEEEEe--CCCchH--HHHHHHHHHHCCCEEEEEecch
Confidence 3455553 344544 4567899999999999987654
No 494
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=30.09 E-value=1e+02 Score=29.12 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCc-C---hHHHHHHHHHHHhCCCEEEEEe
Q 012277 12 KLAHCLVLTYPGQG-H---INPLLQFSRRLQHKGIKVTLVT 48 (467)
Q Consensus 12 ~~~~il~~~~~~~G-H---~~p~l~la~~L~~rGh~V~~~~ 48 (467)
+++||.++..|... | +.-...++++|.+.||+|.++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 46799988886554 3 3466788999999999998764
No 495
>PRK05636 replicative DNA helicase; Provisional
Probab=30.04 E-value=1.6e+02 Score=30.34 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=67.3
Q ss_pred EEEEcCCCCcChHHHHHHHHHHH-hCCCEEEEEeCccccccccC-C-CCCCCcceEecCCC-CCCCCCCCccCHHHHHHH
Q 012277 16 CLVLTYPGQGHINPLLQFSRRLQ-HKGIKVTLVTTRFFYKSLHR-D-SSSSSIPLEAISDG-YDEGGYAQAESIEAYLER 91 (467)
Q Consensus 16 il~~~~~~~GH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (467)
|++...++.|-..-.+.+|...+ +.|..|.|++-+.....+.. . ....++....+..+ +.. +....+......
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~---~e~~~~~~a~~~ 344 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDE---DAWEKLVQRLGK 344 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCH---HHHHHHHHHHHH
Confidence 56777888898888899998876 45899999988765544421 0 11233333322211 111 111111112221
Q ss_pred HHHh----------CchhHHHHHHHhcCCCCCccEEEECCchhhH-------------------HHHHHHcCCCceeeec
Q 012277 92 FWQI----------GPQTLTELVEKMNGSDSPVDCIVYDSILLWA-------------------LDVAKKFGLLGAPFLT 142 (467)
Q Consensus 92 ~~~~----------~~~~l~~~i~~l~~~~~~~DlVI~D~~~~~~-------------------~~~A~~~giP~v~~~~ 142 (467)
+... ....++..++.++.. .+.|+||.|++.... ..+|..++||+|.++-
T Consensus 345 l~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQ 423 (505)
T PRK05636 345 IAQAPIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQ 423 (505)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 1110 011233444444333 347999999876321 3488999999998764
No 496
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.03 E-value=2.8e+02 Score=30.20 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=30.5
Q ss_pred CcEEE-EEcC-CCCcChHHHHHHHHHHHhCCCEEEEEeCccc
Q 012277 13 LAHCL-VLTY-PGQGHINPLLQFSRRLQHKGIKVTLVTTRFF 52 (467)
Q Consensus 13 ~~~il-~~~~-~~~GH~~p~l~la~~L~~rGh~V~~~~~~~~ 52 (467)
..|++ |.+. +|-|--.-...||..|+..|++|.++=.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34555 4333 3559999999999999999999999866543
No 497
>PRK07236 hypothetical protein; Provisional
Probab=30.01 E-value=94 Score=30.56 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=29.5
Q ss_pred CCCCCCcEEEEEcCCCCcChHHHHHHHHHHHhCCCEEEEEeCc
Q 012277 8 PTSCKLAHCLVLTYPGQGHINPLLQFSRRLQHKGIKVTLVTTR 50 (467)
Q Consensus 8 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGh~V~~~~~~ 50 (467)
|++++.++|+|+-.| ..=+.+|..|+++|++|+++-..
T Consensus 1 ~~~~~~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 1 MTHMSGPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCCCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEecC
Confidence 355677899888665 33478899999999999998854
No 498
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=29.98 E-value=1.3e+02 Score=30.73 Aligned_cols=85 Identities=16% Similarity=0.319 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCccccccccCCCCCCCcceEecC--CCCCCCCCCCccCHHHHHH--HHHHhCchhHHHH
Q 012277 28 NPLLQFSRRLQHKGIKVTLVTTRFFYKSLHRDSSSSSIPLEAIS--DGYDEGGYAQAESIEAYLE--RFWQIGPQTLTEL 103 (467)
Q Consensus 28 ~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 103 (467)
.-.+.+++.|.+.|++|. +++.-.+.++ ..|+.+..+. .++|+..-.+-+++..... .+.+.-.+ +
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~----e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~---~- 80 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLA----EAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDD---D- 80 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHH----HCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCch---H-
Confidence 447789999999999994 4444555666 5788887775 3444421112233222221 11111112 2
Q ss_pred HHHhcCC-CCCccEEEECCc
Q 012277 104 VEKMNGS-DSPVDCIVYDSI 122 (467)
Q Consensus 104 i~~l~~~-~~~~DlVI~D~~ 122 (467)
.+++.+. -.+.|+||++.+
T Consensus 81 ~~~l~~~~I~~IDlVvvNLY 100 (511)
T TIGR00355 81 DADLEEHGIEPIDLVVVNLY 100 (511)
T ss_pred HHHHHHcCCCceeEEEEecc
Confidence 3333321 256899999944
No 499
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=29.89 E-value=5.2e+02 Score=25.03 Aligned_cols=26 Identities=27% Similarity=0.109 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHhhCC-CcEEEEEeC
Q 012277 294 LKAEEMEELAWGLKSSD-QHFLWVVRE 319 (467)
Q Consensus 294 ~~~~~~~~~~~al~~~~-~~~i~~~~~ 319 (467)
..+++...++++|+.+| .+++++.+.
T Consensus 197 ~~p~~~~~~A~~l~~LG~~ralvV~G~ 223 (338)
T COG0547 197 YHPELVELLAEALRLLGVERALVVHGL 223 (338)
T ss_pred eCHHHHHHHHHHHHHhCcceEEEEECC
Confidence 36899999999999999 577777764
No 500
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=29.65 E-value=2.9e+02 Score=26.05 Aligned_cols=109 Identities=22% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCceEEEeecccccCCHHHHHHHHHHHhhCCCcEEEEEeCCccCcCCccccccccCCCcEEEEeccchHhhhccc-ccce
Q 012277 280 KESVVYVSYGSFVELKAEEMEELAWGLKSSDQHFLWVVRESEQAKLPKKFSDETLTSHKSLVVSWCPQLEVLAHE-ATGC 358 (467)
Q Consensus 280 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~p~~~lL~~~-~~~~ 358 (467)
...+..|+.|.+.. ..-+.++.|++.|..+-++-- ..-.++ +-+.++..+ ..+.
T Consensus 192 G~D~tiiA~G~mv~----~al~AA~~L~~~GIsa~Vi~m-~tIKPi--------------------D~~~i~~~A~~t~~ 246 (312)
T COG3958 192 GSDLTIIATGVMVA----EALEAAEILKKEGISAAVINM-FTIKPI--------------------DEQAILKAARETGR 246 (312)
T ss_pred CCceEEEecCcchH----HHHHHHHHHHhcCCCEEEEec-CccCCC--------------------CHHHHHHHHhhcCc
Confidence 34588899998863 334456778888876533321 111223 333333322 1122
Q ss_pred eee------cCChhh-HHHHHHhCCC--eeecCCccchhhHHHHHHhHhccccccC--CcCHHHHHHHHHHHh
Q 012277 359 FVT------HCGWNS-TMEALSLGVP--MVAMPQWSDQSTNAKYILDVWKTGLKFP--IVKRDAIADCISEIL 420 (467)
Q Consensus 359 ~I~------HGG~~t-~~eal~~GvP--~v~~P~~~DQ~~na~~v~~~~G~G~~l~--~~~~~~l~~~i~~vl 420 (467)
+|| +||.|| +.|.+.---| +..+... |++..+.+..++ ++ .++++.|.+.+.+++
T Consensus 247 IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp-~~fg~sg~~~~L------l~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 247 IVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVP-DTFGRSGKADEL------LDYYGLDPESIAARVLELL 312 (312)
T ss_pred EEEEecceeecchhHHHHHHHHhcCCcceEEecCC-chhccccchHHH------HHHhCCCHHHHHHHHHhhC
Confidence 554 799876 5666665555 3333332 666655444333 22 678888887776653
Done!