Query 012279
Match_columns 467
No_of_seqs 365 out of 3152
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 00:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 1.7E-75 3.6E-80 619.9 32.3 444 1-455 1-453 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 1.8E-47 3.8E-52 361.5 24.6 239 4-254 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 1.5E-37 3.2E-42 306.5 19.8 222 226-447 1-231 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 3.9E-32 8.6E-37 270.2 29.8 301 11-321 285-598 (980)
5 PF00350 Dynamin_N: Dynamin fa 99.9 1.8E-23 3.8E-28 189.0 14.2 167 41-217 1-168 (168)
6 COG1159 Era GTPase [General fu 99.9 1.2E-22 2.6E-27 192.8 11.8 206 38-309 6-214 (298)
7 TIGR00436 era GTP-binding prot 99.8 2.9E-19 6.2E-24 174.2 11.2 205 40-311 2-208 (270)
8 COG0370 FeoB Fe2+ transport sy 99.8 1.6E-18 3.5E-23 180.8 14.5 309 39-444 4-314 (653)
9 PF02421 FeoB_N: Ferrous iron 99.8 5.8E-19 1.3E-23 156.0 6.5 147 40-253 2-150 (156)
10 PRK00089 era GTPase Era; Revie 99.8 3.3E-18 7.2E-23 168.7 11.3 209 38-310 5-214 (292)
11 PRK15494 era GTPase Era; Provi 99.7 2.9E-17 6.3E-22 164.8 11.8 211 39-315 53-264 (339)
12 COG0486 ThdF Predicted GTPase 99.7 4.6E-15 9.9E-20 149.2 20.9 154 36-257 215-369 (454)
13 KOG1423 Ras-like GTPase ERA [C 99.7 1.4E-16 2.9E-21 150.7 8.9 211 37-307 71-311 (379)
14 COG1160 Predicted GTPases [Gen 99.7 3.2E-16 7E-21 157.0 12.0 155 39-258 4-159 (444)
15 PRK09866 hypothetical protein; 99.7 1E-14 2.2E-19 151.9 22.7 178 37-224 68-306 (741)
16 PRK09554 feoB ferrous iron tra 99.6 3.2E-15 6.9E-20 163.7 13.4 159 38-259 3-163 (772)
17 COG1084 Predicted GTPase [Gene 99.6 4.8E-15 1E-19 142.4 11.8 160 4-223 134-296 (346)
18 PRK12298 obgE GTPase CgtA; Rev 99.6 1.4E-14 2.9E-19 147.6 15.9 180 37-279 158-348 (390)
19 COG0218 Predicted GTPase [Gene 99.6 2.9E-14 6.4E-19 128.9 13.5 130 36-225 22-153 (200)
20 TIGR03156 GTP_HflX GTP-binding 99.6 8.6E-14 1.9E-18 140.1 18.1 127 36-222 187-316 (351)
21 PRK12299 obgE GTPase CgtA; Rev 99.5 8.1E-14 1.8E-18 139.2 13.6 162 37-259 157-323 (335)
22 COG1160 Predicted GTPases [Gen 99.5 4.2E-14 9.1E-19 141.9 11.0 165 37-259 177-343 (444)
23 PRK11058 GTPase HflX; Provisio 99.5 1.6E-13 3.4E-18 141.4 15.2 126 37-222 196-324 (426)
24 PRK00454 engB GTP-binding prot 99.5 2.1E-13 4.6E-18 126.0 14.4 126 36-223 22-151 (196)
25 TIGR03598 GTPase_YsxC ribosome 99.5 1.5E-13 3.1E-18 125.7 12.5 125 36-222 16-144 (179)
26 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.4E-13 3.1E-18 127.7 12.1 124 40-223 2-132 (196)
27 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 1.9E-13 4E-18 122.8 12.3 117 39-222 1-117 (168)
28 TIGR00450 mnmE_trmE_thdF tRNA 99.5 3.2E-12 7E-17 132.4 22.7 156 36-261 201-357 (442)
29 cd01878 HflX HflX subfamily. 99.5 8.2E-13 1.8E-17 123.2 16.2 128 36-223 39-169 (204)
30 PRK05291 trmE tRNA modificatio 99.5 2.3E-12 4.9E-17 134.2 21.1 153 37-262 214-368 (449)
31 PF01926 MMR_HSR1: 50S ribosom 99.5 2.4E-13 5.1E-18 115.1 10.7 115 40-216 1-116 (116)
32 PRK03003 GTP-binding protein D 99.5 5.3E-13 1.2E-17 140.1 15.4 126 37-222 210-337 (472)
33 cd04163 Era Era subfamily. Er 99.5 5.2E-13 1.1E-17 118.8 13.1 124 38-223 3-127 (168)
34 cd01868 Rab11_like Rab11-like. 99.5 6.2E-13 1.3E-17 119.3 12.7 152 38-256 3-157 (165)
35 COG3596 Predicted GTPase [Gene 99.5 5.2E-13 1.1E-17 125.6 12.4 125 36-223 36-164 (296)
36 cd01898 Obg Obg subfamily. Th 99.5 4.5E-13 9.8E-18 120.7 11.3 124 40-224 2-131 (170)
37 cd01866 Rab2 Rab2 subfamily. 99.5 6.6E-13 1.4E-17 119.8 12.4 154 37-257 3-159 (168)
38 TIGR03594 GTPase_EngA ribosome 99.5 1.1E-12 2.5E-17 136.3 15.9 126 37-221 171-297 (429)
39 cd01897 NOG NOG1 is a nucleola 99.5 9.4E-13 2E-17 118.4 13.2 25 39-63 1-25 (168)
40 cd01895 EngA2 EngA2 subfamily. 99.4 1.4E-12 3.1E-17 117.1 13.7 127 38-223 2-129 (174)
41 cd01861 Rab6 Rab6 subfamily. 99.4 9.7E-13 2.1E-17 117.4 12.0 147 40-253 2-151 (161)
42 PRK12296 obgE GTPase CgtA; Rev 99.4 9.3E-13 2E-17 136.7 13.5 163 37-262 158-338 (500)
43 cd04112 Rab26 Rab26 subfamily. 99.4 1.6E-12 3.4E-17 120.1 13.4 114 140-267 50-166 (191)
44 TIGR02729 Obg_CgtA Obg family 99.4 8.6E-13 1.9E-17 131.7 11.9 125 37-222 156-288 (329)
45 TIGR03594 GTPase_EngA ribosome 99.4 1.8E-12 3.8E-17 134.9 14.7 153 40-259 1-155 (429)
46 PRK04213 GTP-binding protein; 99.4 2.1E-12 4.6E-17 120.1 13.5 125 37-223 8-146 (201)
47 cd01865 Rab3 Rab3 subfamily. 99.4 1.8E-12 3.8E-17 116.6 12.5 152 39-258 2-157 (165)
48 cd04171 SelB SelB subfamily. 99.4 1.6E-12 3.4E-17 116.1 12.1 68 139-222 50-119 (164)
49 PRK03003 GTP-binding protein D 99.4 3.2E-12 6.9E-17 134.3 16.1 159 36-261 36-196 (472)
50 cd01867 Rab8_Rab10_Rab13_like 99.4 2.2E-12 4.7E-17 116.3 12.7 152 38-256 3-157 (167)
51 cd01853 Toc34_like Toc34-like 99.4 3E-12 6.5E-17 122.8 14.3 129 37-224 30-166 (249)
52 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 3E-12 6.5E-17 115.1 13.2 152 39-257 3-157 (166)
53 PRK00093 GTP-binding protein D 99.4 2.3E-12 4.9E-17 134.4 13.9 127 37-222 172-299 (435)
54 cd04113 Rab4 Rab4 subfamily. 99.4 2.4E-12 5.1E-17 115.0 12.0 149 40-255 2-153 (161)
55 smart00175 RAB Rab subfamily o 99.4 2.3E-12 5E-17 115.1 12.0 149 40-255 2-153 (164)
56 PRK00093 GTP-binding protein D 99.4 3.9E-12 8.5E-17 132.6 15.4 153 39-258 2-156 (435)
57 PRK12297 obgE GTPase CgtA; Rev 99.4 2.8E-12 6E-17 131.5 13.9 123 37-220 157-287 (424)
58 cd00154 Rab Rab family. Rab G 99.4 1.8E-12 3.9E-17 114.4 10.8 114 40-220 2-118 (159)
59 cd04122 Rab14 Rab14 subfamily. 99.4 3.8E-12 8.3E-17 114.5 13.0 150 39-255 3-155 (166)
60 cd04136 Rap_like Rap-like subf 99.4 2.7E-12 5.8E-17 114.7 11.7 148 39-254 2-153 (163)
61 KOG1191 Mitochondrial GTPase [ 99.4 9.2E-12 2E-16 125.2 16.4 130 36-225 266-407 (531)
62 KOG0448 Mitofusin 1 GTPase, in 99.4 1.5E-10 3.3E-15 120.4 25.8 185 10-230 94-284 (749)
63 cd01894 EngA1 EngA1 subfamily. 99.4 1.7E-12 3.8E-17 114.8 10.0 77 140-223 45-121 (157)
64 cd04145 M_R_Ras_like M-Ras/R-R 99.4 3.8E-12 8.2E-17 113.8 12.3 101 140-254 50-154 (164)
65 cd04119 RJL RJL (RabJ-Like) su 99.4 4.8E-12 1E-16 113.3 12.9 149 40-256 2-159 (168)
66 cd01862 Rab7 Rab7 subfamily. 99.4 3.5E-12 7.6E-17 115.0 12.0 152 40-258 2-161 (172)
67 smart00173 RAS Ras subfamily o 99.4 2.8E-12 6E-17 114.9 11.2 149 40-256 2-154 (164)
68 cd04106 Rab23_lke Rab23-like s 99.4 3.5E-12 7.6E-17 113.9 11.6 100 140-253 51-152 (162)
69 PRK09518 bifunctional cytidyla 99.4 4.5E-12 9.8E-17 139.4 14.8 126 37-222 449-576 (712)
70 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.1E-11 2.4E-16 109.6 14.5 120 40-223 3-123 (157)
71 cd04157 Arl6 Arl6 subfamily. 99.4 4.7E-12 1E-16 113.0 12.1 70 139-222 44-119 (162)
72 cd04142 RRP22 RRP22 subfamily. 99.4 7E-12 1.5E-16 116.5 13.5 157 40-255 2-165 (198)
73 cd00880 Era_like Era (E. coli 99.4 1.1E-11 2.4E-16 109.0 13.8 78 139-224 44-121 (163)
74 cd04138 H_N_K_Ras_like H-Ras/N 99.4 7.4E-12 1.6E-16 111.4 12.9 149 39-255 2-153 (162)
75 cd04139 RalA_RalB RalA/RalB su 99.4 7.1E-12 1.5E-16 111.8 12.4 150 40-256 2-154 (164)
76 cd01860 Rab5_related Rab5-rela 99.4 7.6E-12 1.7E-16 111.8 12.5 149 40-255 3-154 (163)
77 cd01879 FeoB Ferrous iron tran 99.4 4.7E-12 1E-16 112.4 10.9 103 140-254 43-147 (158)
78 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.3E-11 2.9E-16 120.2 14.7 140 12-223 22-169 (313)
79 cd01864 Rab19 Rab19 subfamily. 99.4 8.9E-12 1.9E-16 111.9 12.5 119 38-223 3-124 (165)
80 cd04175 Rap1 Rap1 subgroup. T 99.4 7.8E-12 1.7E-16 112.1 12.0 148 40-255 3-154 (164)
81 cd00881 GTP_translation_factor 99.3 7.1E-12 1.5E-16 114.6 11.5 69 139-222 61-129 (189)
82 cd01876 YihA_EngB The YihA (En 99.3 6.6E-12 1.4E-16 112.0 11.0 122 40-223 1-126 (170)
83 PRK09518 bifunctional cytidyla 99.3 1E-11 2.2E-16 136.6 14.5 159 36-261 273-433 (712)
84 cd04114 Rab30 Rab30 subfamily. 99.3 1.2E-11 2.7E-16 111.2 12.6 120 37-223 6-128 (169)
85 cd04101 RabL4 RabL4 (Rab-like4 99.3 1.1E-11 2.4E-16 111.0 12.1 101 138-253 50-153 (164)
86 cd01890 LepA LepA subfamily. 99.3 8.7E-12 1.9E-16 113.4 11.6 69 138-221 65-133 (179)
87 cd04123 Rab21 Rab21 subfamily. 99.3 1.4E-11 3.1E-16 109.5 12.5 150 40-256 2-154 (162)
88 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.9E-11 4.1E-16 112.1 13.5 115 40-221 5-123 (183)
89 cd04127 Rab27A Rab27a subfamil 99.3 1.3E-11 2.9E-16 112.3 12.4 103 140-256 63-169 (180)
90 cd04104 p47_IIGP_like p47 (47- 99.3 2E-11 4.4E-16 113.3 13.6 121 39-222 2-122 (197)
91 cd01881 Obg_like The Obg-like 99.3 4.3E-12 9.3E-17 114.7 8.7 80 139-224 43-137 (176)
92 cd04156 ARLTS1 ARLTS1 subfamil 99.3 2.6E-11 5.7E-16 108.0 13.4 111 40-221 1-115 (160)
93 cd04144 Ras2 Ras2 subfamily. 99.3 1.6E-11 3.4E-16 113.3 12.3 109 140-262 47-161 (190)
94 cd04140 ARHI_like ARHI subfami 99.3 1.1E-11 2.4E-16 111.5 10.8 104 139-256 48-157 (165)
95 cd04124 RabL2 RabL2 subfamily. 99.3 1.5E-11 3.3E-16 110.2 11.6 114 40-220 2-117 (161)
96 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 2.3E-11 5E-16 113.3 13.1 155 40-260 2-164 (201)
97 cd01863 Rab18 Rab18 subfamily. 99.3 3E-11 6.5E-16 107.8 13.2 145 40-252 2-150 (161)
98 cd00876 Ras Ras family. The R 99.3 1.5E-11 3.2E-16 109.2 11.0 146 40-253 1-150 (160)
99 COG2262 HflX GTPases [General 99.3 4.2E-11 9.1E-16 118.8 14.9 130 35-224 189-321 (411)
100 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 2E-11 4.3E-16 110.6 11.7 155 40-261 2-162 (170)
101 cd04111 Rab39 Rab39 subfamily. 99.3 3.4E-11 7.3E-16 113.1 13.7 157 39-261 3-163 (211)
102 cd04159 Arl10_like Arl10-like 99.3 4.1E-11 8.8E-16 105.8 13.5 113 40-223 1-117 (159)
103 PRK15467 ethanolamine utilizat 99.3 3.3E-11 7.2E-16 107.9 12.7 104 144-262 41-145 (158)
104 cd04125 RabA_like RabA-like su 99.3 4.6E-11 1E-15 109.9 13.6 156 39-261 1-159 (188)
105 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 4.1E-11 8.9E-16 108.8 12.8 151 40-258 4-158 (172)
106 PF04548 AIG1: AIG1 family; I 99.3 1E-11 2.2E-16 116.7 9.0 126 40-224 2-133 (212)
107 cd04151 Arl1 Arl1 subfamily. 99.3 2.6E-11 5.7E-16 108.1 11.2 69 140-222 43-115 (158)
108 cd04110 Rab35 Rab35 subfamily. 99.3 3.6E-11 7.8E-16 111.8 12.4 157 37-260 5-163 (199)
109 PTZ00369 Ras-like protein; Pro 99.3 3.9E-11 8.5E-16 110.5 12.5 116 38-221 5-124 (189)
110 cd04120 Rab12 Rab12 subfamily. 99.3 5E-11 1.1E-15 111.0 13.3 150 40-256 2-155 (202)
111 PLN03110 Rab GTPase; Provision 99.3 5E-11 1.1E-15 112.4 13.1 152 38-255 12-165 (216)
112 cd04109 Rab28 Rab28 subfamily. 99.3 3.7E-11 8E-16 113.1 12.1 154 40-259 2-161 (215)
113 cd04115 Rab33B_Rab33A Rab33B/R 99.3 4.4E-11 9.6E-16 108.1 12.0 143 39-248 3-150 (170)
114 cd04154 Arl2 Arl2 subfamily. 99.3 8.7E-11 1.9E-15 106.5 13.9 114 37-222 13-130 (173)
115 PLN03118 Rab family protein; P 99.3 6.4E-11 1.4E-15 111.2 13.4 157 38-263 14-176 (211)
116 cd04116 Rab9 Rab9 subfamily. 99.3 5.6E-11 1.2E-15 107.2 12.5 119 37-221 4-128 (170)
117 cd04176 Rap2 Rap2 subgroup. T 99.3 2.7E-11 5.8E-16 108.4 10.3 115 40-222 3-121 (163)
118 TIGR02528 EutP ethanolamine ut 99.3 4.8E-11 1.1E-15 104.3 11.7 24 40-63 2-25 (142)
119 PLN03108 Rab family protein; P 99.3 6.7E-11 1.4E-15 111.0 13.2 152 38-256 6-160 (210)
120 cd04137 RheB Rheb (Ras Homolog 99.3 5.4E-11 1.2E-15 108.4 12.2 153 40-260 3-159 (180)
121 PF05049 IIGP: Interferon-indu 99.3 2.1E-11 4.6E-16 121.8 10.2 128 6-219 16-153 (376)
122 smart00178 SAR Sar1p-like memb 99.3 6.2E-11 1.3E-15 108.8 12.4 113 37-221 16-132 (184)
123 cd04177 RSR1 RSR1 subgroup. R 99.3 5.8E-11 1.3E-15 107.0 11.9 148 40-254 3-154 (168)
124 cd04118 Rab24 Rab24 subfamily. 99.3 5.2E-11 1.1E-15 109.9 11.8 107 140-260 50-162 (193)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.2 5.7E-11 1.2E-15 105.7 11.6 71 139-223 42-116 (158)
126 cd04117 Rab15 Rab15 subfamily. 99.2 7.9E-11 1.7E-15 105.5 12.5 149 40-255 2-153 (161)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.2 1.1E-10 2.3E-15 104.9 13.1 70 139-222 49-122 (167)
128 cd04158 ARD1 ARD1 subfamily. 99.2 7E-11 1.5E-15 106.8 11.8 70 139-222 42-115 (169)
129 cd01893 Miro1 Miro1 subfamily. 99.2 8.5E-11 1.8E-15 105.8 12.3 114 40-223 2-119 (166)
130 cd01891 TypA_BipA TypA (tyrosi 99.2 1.2E-10 2.5E-15 107.9 13.4 69 139-222 64-132 (194)
131 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 5.4E-11 1.2E-15 108.1 10.9 112 38-221 15-130 (174)
132 PF00009 GTP_EFTU: Elongation 99.2 8.8E-12 1.9E-16 114.9 5.7 132 38-220 3-135 (188)
133 cd04161 Arl2l1_Arl13_like Arl2 99.2 7.7E-11 1.7E-15 106.4 11.7 71 139-223 42-116 (167)
134 cd04149 Arf6 Arf6 subfamily. 99.2 8.7E-11 1.9E-15 106.2 12.0 113 37-221 8-124 (168)
135 cd04147 Ras_dva Ras-dva subfam 99.2 6.3E-11 1.4E-15 110.1 11.2 69 140-222 47-119 (198)
136 cd04146 RERG_RasL11_like RERG/ 99.2 6.4E-11 1.4E-15 106.3 9.9 70 140-222 47-121 (165)
137 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 2.2E-10 4.7E-15 103.1 13.3 113 40-223 1-115 (164)
138 cd01889 SelB_euk SelB subfamil 99.2 1.4E-10 3E-15 107.2 12.0 67 139-222 67-135 (192)
139 cd00879 Sar1 Sar1 subfamily. 99.2 2.2E-10 4.7E-15 105.4 13.1 113 37-221 18-134 (190)
140 cd04150 Arf1_5_like Arf1-Arf5- 99.2 1.4E-10 3.1E-15 103.7 11.5 70 139-222 43-116 (159)
141 cd04166 CysN_ATPS CysN_ATPS su 99.2 7.6E-11 1.6E-15 110.5 10.1 82 125-222 63-145 (208)
142 cd00157 Rho Rho (Ras homology) 99.2 5.8E-11 1.3E-15 106.9 8.9 24 40-63 2-25 (171)
143 cd04121 Rab40 Rab40 subfamily. 99.2 1.9E-10 4E-15 106.1 12.3 158 37-261 5-164 (189)
144 TIGR00437 feoB ferrous iron tr 99.2 1.1E-10 2.3E-15 125.4 12.1 109 140-260 41-151 (591)
145 PF10662 PduV-EutP: Ethanolami 99.2 1.2E-10 2.6E-15 101.0 10.1 24 40-63 3-26 (143)
146 cd04165 GTPBP1_like GTPBP1-lik 99.2 1.2E-10 2.7E-15 110.1 10.8 75 134-222 78-153 (224)
147 smart00174 RHO Rho (Ras homolo 99.2 8.4E-11 1.8E-15 106.4 9.2 68 140-222 46-117 (174)
148 cd04148 RGK RGK subfamily. Th 99.2 4.4E-10 9.5E-15 106.3 14.3 109 139-263 49-162 (221)
149 smart00177 ARF ARF-like small 99.2 3.8E-10 8.2E-15 102.7 13.3 70 139-222 56-129 (175)
150 cd04132 Rho4_like Rho4-like su 99.2 2.5E-10 5.4E-15 104.7 12.2 116 40-222 2-120 (187)
151 cd01850 CDC_Septin CDC/Septin. 99.2 2.3E-10 4.9E-15 111.8 12.4 138 39-223 5-159 (276)
152 cd00882 Ras_like_GTPase Ras-li 99.2 1.6E-10 3.5E-15 100.1 10.3 99 139-251 44-147 (157)
153 cd01884 EF_Tu EF-Tu subfamily. 99.2 7.3E-11 1.6E-15 109.3 8.3 70 137-221 62-132 (195)
154 cd01892 Miro2 Miro2 subfamily. 99.2 2.1E-10 4.5E-15 103.8 11.1 120 37-222 3-123 (169)
155 PTZ00133 ADP-ribosylation fact 99.2 6.2E-10 1.3E-14 102.0 14.3 69 139-221 60-132 (182)
156 cd01896 DRG The developmentall 99.2 1.9E-10 4.1E-15 109.6 11.1 24 40-63 2-25 (233)
157 cd01874 Cdc42 Cdc42 subfamily. 99.2 1.7E-10 3.8E-15 105.0 10.3 115 40-222 3-120 (175)
158 CHL00189 infB translation init 99.2 2.6E-10 5.6E-15 123.8 13.3 161 34-260 240-406 (742)
159 cd04143 Rhes_like Rhes_like su 99.2 4.4E-10 9.4E-15 108.0 13.5 152 40-259 2-166 (247)
160 KOG1489 Predicted GTP-binding 99.2 7.5E-11 1.6E-15 112.8 7.8 153 37-253 195-356 (366)
161 cd04155 Arl3 Arl3 subfamily. 99.2 6.5E-10 1.4E-14 100.4 13.7 114 37-222 13-130 (173)
162 TIGR00491 aIF-2 translation in 99.1 4.2E-10 9.1E-15 120.1 14.2 131 37-221 3-135 (590)
163 cd00877 Ran Ran (Ras-related n 99.1 2E-10 4.4E-15 103.5 10.0 104 140-260 49-155 (166)
164 TIGR00487 IF-2 translation ini 99.1 4.2E-10 9E-15 120.3 14.0 157 34-259 83-245 (587)
165 TIGR00231 small_GTP small GTP- 99.1 5.2E-10 1.1E-14 98.1 12.3 29 39-68 2-30 (161)
166 TIGR00475 selB selenocysteine- 99.1 2.8E-10 6.2E-15 122.0 12.4 108 140-262 50-164 (581)
167 PLN03071 GTP-binding nuclear p 99.1 3.5E-10 7.6E-15 106.8 11.6 154 37-260 12-168 (219)
168 KOG1954 Endocytosis/signaling 99.1 4.4E-10 9.6E-15 109.1 12.1 170 36-224 56-228 (532)
169 cd01886 EF-G Elongation factor 99.1 3.1E-10 6.8E-15 110.4 11.0 69 138-221 62-130 (270)
170 PLN00223 ADP-ribosylation fact 99.1 9.4E-10 2E-14 100.7 13.4 70 139-222 60-133 (181)
171 TIGR00993 3a0901s04IAP86 chlor 99.1 8.1E-10 1.7E-14 116.1 14.1 125 39-222 119-251 (763)
172 PRK09602 translation-associate 99.1 2.3E-09 5E-14 109.5 17.2 39 39-77 2-40 (396)
173 cd04128 Spg1 Spg1p. Spg1p (se 99.1 8E-10 1.7E-14 101.3 12.4 67 140-221 49-118 (182)
174 PRK05306 infB translation init 99.1 5.6E-10 1.2E-14 122.2 12.9 157 34-260 286-448 (787)
175 cd01870 RhoA_like RhoA-like su 99.1 6.5E-10 1.4E-14 100.6 11.3 25 39-63 2-26 (175)
176 cd04126 Rab20 Rab20 subfamily. 99.1 7.5E-10 1.6E-14 104.5 11.9 111 40-221 2-114 (220)
177 cd01888 eIF2_gamma eIF2-gamma 99.1 1.1E-09 2.4E-14 102.2 11.9 67 140-222 83-152 (203)
178 cd04130 Wrch_1 Wrch-1 subfamil 99.1 6.5E-10 1.4E-14 100.7 9.8 69 140-222 48-119 (173)
179 cd04169 RF3 RF3 subfamily. Pe 99.1 1.2E-09 2.6E-14 106.1 12.0 70 138-222 69-138 (267)
180 cd01899 Ygr210 Ygr210 subfamil 99.1 1.9E-09 4.2E-14 106.9 13.6 37 41-77 1-37 (318)
181 cd04105 SR_beta Signal recogni 99.1 2.3E-09 5.1E-14 100.0 13.0 118 39-223 1-125 (203)
182 cd04168 TetM_like Tet(M)-like 99.0 8.6E-10 1.9E-14 105.3 10.2 69 138-221 62-130 (237)
183 cd04135 Tc10 TC10 subfamily. 99.0 1.8E-09 3.9E-14 97.6 11.8 24 40-63 2-25 (174)
184 cd04134 Rho3 Rho3 subfamily. 99.0 6.9E-10 1.5E-14 102.3 9.2 116 40-223 2-120 (189)
185 KOG1490 GTP-binding protein CR 99.0 2.1E-10 4.5E-15 115.5 6.0 162 3-224 133-298 (620)
186 cd04170 EF-G_bact Elongation f 99.0 8.2E-10 1.8E-14 107.6 9.9 70 138-222 62-131 (268)
187 cd01871 Rac1_like Rac1-like su 99.0 3.4E-09 7.4E-14 96.3 13.2 115 40-222 3-120 (174)
188 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 3E-10 6.5E-15 101.4 5.9 153 37-256 21-177 (221)
189 cd04133 Rop_like Rop subfamily 99.0 1.3E-09 2.8E-14 99.3 9.9 115 40-222 3-120 (176)
190 PRK10512 selenocysteinyl-tRNA- 99.0 1.3E-09 2.8E-14 117.4 11.4 110 137-261 48-163 (614)
191 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 3.2E-09 7E-14 100.8 12.8 117 37-221 12-131 (232)
192 cd01885 EF2 EF2 (for archaea a 99.0 1.9E-09 4.1E-14 101.7 11.0 67 139-220 72-138 (222)
193 PF00071 Ras: Ras family; Int 99.0 2E-09 4.3E-14 96.1 10.5 149 40-254 1-151 (162)
194 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 2.4E-09 5.2E-14 98.2 10.9 116 38-221 5-123 (182)
195 cd04131 Rnd Rnd subfamily. Th 99.0 2.7E-09 5.8E-14 97.5 10.5 114 40-221 3-119 (178)
196 cd04167 Snu114p Snu114p subfam 99.0 4E-09 8.8E-14 99.1 11.9 67 139-220 70-136 (213)
197 TIGR01393 lepA GTP-binding pro 99.0 1.9E-09 4.2E-14 115.7 10.7 132 38-221 3-136 (595)
198 cd01875 RhoG RhoG subfamily. 99.0 4E-09 8.7E-14 97.4 11.2 116 39-222 4-122 (191)
199 PRK12317 elongation factor 1-a 99.0 3E-09 6.5E-14 110.5 11.2 143 38-221 6-153 (425)
200 smart00176 RAN Ran (Ras-relate 99.0 5.1E-09 1.1E-13 97.4 11.1 108 139-262 43-152 (200)
201 cd01900 YchF YchF subfamily. 98.9 2.9E-09 6.2E-14 103.3 8.8 37 41-77 1-37 (274)
202 PTZ00258 GTP-binding protein; 98.9 5.5E-09 1.2E-13 105.8 11.1 103 36-185 19-124 (390)
203 PRK04004 translation initiatio 98.9 5.4E-09 1.2E-13 112.0 11.7 66 140-220 71-136 (586)
204 CHL00071 tufA elongation facto 98.9 4.4E-09 9.5E-14 108.6 10.2 72 137-223 72-144 (409)
205 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 7.6E-09 1.7E-13 97.7 11.0 114 40-222 3-120 (222)
206 cd04102 RabL3 RabL3 (Rab-like3 98.9 3.6E-08 7.9E-13 91.8 15.2 68 140-222 54-144 (202)
207 PRK05433 GTP-binding protein L 98.9 7E-09 1.5E-13 111.5 11.9 133 37-221 6-140 (600)
208 PF00025 Arf: ADP-ribosylation 98.9 6.2E-09 1.3E-13 94.8 9.6 114 37-222 13-130 (175)
209 PLN03127 Elongation factor Tu; 98.9 6.1E-09 1.3E-13 108.3 10.4 132 37-222 60-192 (447)
210 PRK09435 membrane ATPase/prote 98.9 1.5E-08 3.2E-13 100.8 12.5 25 37-61 55-79 (332)
211 PRK09601 GTP-binding protein Y 98.9 9.5E-09 2.1E-13 102.9 11.0 38 39-76 3-40 (364)
212 TIGR00484 EF-G translation elo 98.9 6.7E-09 1.5E-13 114.1 10.9 134 37-222 9-142 (689)
213 PRK12739 elongation factor G; 98.9 1.1E-08 2.3E-13 112.5 11.4 134 37-222 7-140 (691)
214 cd01883 EF1_alpha Eukaryotic e 98.9 6.8E-09 1.5E-13 98.0 8.6 70 138-221 75-151 (219)
215 KOG0092 GTPase Rab5/YPT51 and 98.9 5.5E-09 1.2E-13 93.3 7.2 157 39-263 6-166 (200)
216 COG0536 Obg Predicted GTPase [ 98.9 9.8E-09 2.1E-13 99.6 9.2 127 39-225 160-293 (369)
217 KOG0078 GTP-binding protein SE 98.8 8.5E-09 1.9E-13 93.7 8.2 153 35-254 9-164 (207)
218 PRK00007 elongation factor G; 98.8 1.3E-08 2.8E-13 111.8 11.0 135 37-223 9-143 (693)
219 PRK05124 cysN sulfate adenylyl 98.8 4.3E-08 9.3E-13 102.9 14.3 148 36-223 25-176 (474)
220 COG1163 DRG Predicted GTPase [ 98.8 5.8E-09 1.3E-13 100.4 7.1 108 35-206 60-167 (365)
221 cd04129 Rho2 Rho2 subfamily. 98.8 1.5E-08 3.3E-13 93.1 9.6 24 40-63 3-26 (187)
222 PRK12735 elongation factor Tu; 98.8 1.2E-08 2.5E-13 105.0 9.6 71 137-222 72-143 (396)
223 TIGR03680 eif2g_arch translati 98.8 1.2E-08 2.7E-13 105.2 9.5 68 139-222 79-149 (406)
224 KOG0084 GTPase Rab1/YPT1, smal 98.8 1.6E-08 3.4E-13 90.8 8.8 153 36-255 7-163 (205)
225 TIGR02034 CysN sulfate adenyly 98.8 1.6E-08 3.4E-13 104.3 10.2 82 125-223 66-149 (406)
226 PRK05506 bifunctional sulfate 98.8 1.6E-08 3.4E-13 110.2 10.7 69 137-221 101-171 (632)
227 TIGR01394 TypA_BipA GTP-bindin 98.8 1.3E-08 2.9E-13 109.1 9.7 70 138-222 62-131 (594)
228 COG1100 GTPase SAR1 and relate 98.8 3.4E-08 7.4E-13 92.8 11.4 119 39-225 6-129 (219)
229 TIGR00485 EF-Tu translation el 98.8 9.9E-09 2.2E-13 105.5 8.1 131 38-222 12-143 (394)
230 PF00735 Septin: Septin; Inte 98.8 1.6E-08 3.6E-13 98.7 9.1 140 40-224 6-159 (281)
231 PRK12736 elongation factor Tu; 98.8 1.5E-08 3.3E-13 104.1 9.2 70 138-222 73-143 (394)
232 cd01873 RhoBTB RhoBTB subfamil 98.8 3.4E-08 7.4E-13 91.5 10.5 67 139-221 65-134 (195)
233 PRK00741 prfC peptide chain re 98.8 4.2E-08 9E-13 104.0 11.9 70 138-222 77-146 (526)
234 TIGR00483 EF-1_alpha translati 98.8 2.7E-08 5.9E-13 103.4 10.4 69 138-221 83-155 (426)
235 PRK10218 GTP-binding protein; 98.8 4.6E-08 9.9E-13 105.0 12.3 70 138-222 66-135 (607)
236 TIGR02836 spore_IV_A stage IV 98.8 8.4E-08 1.8E-12 96.1 13.0 142 40-221 19-194 (492)
237 PF09439 SRPRB: Signal recogni 98.8 2.4E-08 5.3E-13 90.5 8.4 118 37-222 2-127 (181)
238 PF08477 Miro: Miro-like prote 98.8 6.8E-09 1.5E-13 87.7 4.4 24 40-63 1-24 (119)
239 PTZ00132 GTP-binding nuclear p 98.8 2.4E-07 5.3E-12 87.0 15.4 99 139-254 57-158 (215)
240 cd01882 BMS1 Bms1. Bms1 is an 98.8 3.6E-08 7.8E-13 93.5 9.7 71 135-223 78-149 (225)
241 PRK00049 elongation factor Tu; 98.8 2.3E-08 5.1E-13 102.7 8.9 70 137-221 72-142 (396)
242 TIGR00503 prfC peptide chain r 98.7 5.3E-08 1.1E-12 103.2 11.5 70 137-221 77-146 (527)
243 COG2229 Predicted GTPase [Gene 98.7 2.5E-07 5.4E-12 82.4 12.9 137 36-231 8-147 (187)
244 KOG2486 Predicted GTPase [Gene 98.7 7.5E-08 1.6E-12 90.9 10.1 131 34-223 132-264 (320)
245 PLN03126 Elongation factor Tu; 98.7 5.4E-08 1.2E-12 101.8 10.0 132 37-222 80-212 (478)
246 TIGR00490 aEF-2 translation el 98.7 6.2E-08 1.4E-12 106.8 10.8 70 137-221 83-152 (720)
247 cd04103 Centaurin_gamma Centau 98.7 1.2E-07 2.5E-12 84.8 10.5 24 40-63 2-25 (158)
248 COG4917 EutP Ethanolamine util 98.7 3.2E-08 7E-13 82.2 5.5 104 39-222 2-105 (148)
249 PRK13351 elongation factor G; 98.7 6.9E-08 1.5E-12 106.3 9.6 70 138-222 71-140 (687)
250 PRK04000 translation initiatio 98.7 1.1E-07 2.4E-12 98.2 10.5 23 39-61 10-32 (411)
251 PLN00023 GTP-binding protein; 98.6 1.3E-07 2.8E-12 93.1 10.0 69 140-222 83-166 (334)
252 KOG0093 GTPase Rab3, small G p 98.6 1.2E-07 2.6E-12 80.9 8.4 119 39-223 22-142 (193)
253 PRK07560 elongation factor EF- 98.6 1.7E-07 3.6E-12 103.7 11.0 133 37-220 19-152 (731)
254 COG0699 Predicted GTPases (dyn 98.6 1.8E-07 3.9E-12 100.1 11.0 321 90-453 3-323 (546)
255 PTZ00416 elongation factor 2; 98.6 1.2E-07 2.5E-12 106.1 9.6 66 140-220 92-157 (836)
256 cd04178 Nucleostemin_like Nucl 98.6 7.3E-08 1.6E-12 87.4 6.4 31 38-68 117-147 (172)
257 cd01858 NGP_1 NGP-1. Autoanti 98.6 6.8E-08 1.5E-12 86.2 6.0 29 39-67 103-131 (157)
258 PLN00116 translation elongatio 98.6 3E-07 6.5E-12 103.0 12.4 67 139-220 97-163 (843)
259 KOG0095 GTPase Rab30, small G 98.6 2.5E-07 5.4E-12 79.1 8.6 123 36-224 5-129 (213)
260 PTZ00141 elongation factor 1- 98.6 1.5E-07 3.4E-12 97.9 8.9 67 136-219 81-157 (446)
261 KOG0098 GTPase Rab2, small G p 98.6 3.3E-07 7.2E-12 81.5 9.0 122 36-223 4-127 (216)
262 cd01849 YlqF_related_GTPase Yl 98.5 1.4E-07 3.1E-12 84.0 6.6 40 36-75 98-138 (155)
263 PTZ00327 eukaryotic translatio 98.5 3.5E-07 7.7E-12 95.1 10.5 23 40-62 36-58 (460)
264 KOG0073 GTP-binding ADP-ribosy 98.5 1.2E-06 2.6E-11 76.4 11.9 156 38-265 16-179 (185)
265 PLN00043 elongation factor 1-a 98.5 3.6E-07 7.8E-12 95.2 10.4 71 136-220 81-158 (447)
266 TIGR00750 lao LAO/AO transport 98.5 9.4E-06 2E-10 80.4 19.4 25 37-61 33-57 (300)
267 PRK12740 elongation factor G; 98.5 4.7E-07 1E-11 99.5 10.6 70 138-222 58-127 (668)
268 KOG1145 Mitochondrial translat 98.5 1.1E-06 2.5E-11 89.8 12.2 152 33-253 148-302 (683)
269 cd01855 YqeH YqeH. YqeH is an 98.5 2E-07 4.4E-12 85.9 6.3 25 39-63 128-152 (190)
270 COG5019 CDC3 Septin family pro 98.5 9.3E-07 2E-11 87.0 10.9 83 140-224 82-179 (373)
271 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3E-07 6.5E-12 80.6 6.6 24 40-63 85-108 (141)
272 KOG0410 Predicted GTP binding 98.5 4.2E-07 9.2E-12 87.5 7.9 127 36-221 176-308 (410)
273 KOG0075 GTP-binding ADP-ribosy 98.5 4.9E-07 1.1E-11 77.2 7.2 74 137-223 62-138 (186)
274 PF03308 ArgK: ArgK protein; 98.5 1.4E-07 2.9E-12 89.3 4.2 24 37-60 28-51 (266)
275 KOG2655 Septin family protein 98.4 1.3E-06 2.8E-11 86.6 10.2 83 140-224 79-175 (366)
276 KOG0070 GTP-binding ADP-ribosy 98.4 7.7E-07 1.7E-11 79.4 7.8 151 37-260 16-174 (181)
277 COG1703 ArgK Putative periplas 98.4 2.5E-06 5.5E-11 81.9 11.7 117 137-275 141-262 (323)
278 COG0532 InfB Translation initi 98.4 2.9E-06 6.2E-11 87.4 12.2 156 36-260 3-166 (509)
279 KOG0394 Ras-related GTPase [Ge 98.4 3.9E-07 8.4E-12 80.9 4.9 121 36-222 7-133 (210)
280 COG0012 Predicted GTPase, prob 98.4 1.2E-06 2.5E-11 86.9 8.7 104 39-185 3-106 (372)
281 cd01851 GBP Guanylate-binding 98.4 1.9E-06 4.2E-11 81.5 9.9 37 37-73 6-45 (224)
282 COG5256 TEF1 Translation elong 98.3 1.2E-06 2.7E-11 87.3 8.0 70 139-223 84-161 (428)
283 TIGR03596 GTPase_YlqF ribosome 98.3 8.7E-07 1.9E-11 86.7 6.7 30 37-66 117-146 (276)
284 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.1E-06 2.3E-11 86.6 6.6 30 37-66 120-149 (287)
285 KOG0091 GTPase Rab39, small G 98.3 1.8E-06 3.9E-11 75.1 6.7 159 36-260 6-169 (213)
286 PRK13768 GTPase; Provisional 98.3 9.9E-06 2.1E-10 78.2 12.3 76 140-224 97-179 (253)
287 KOG1547 Septin CDC10 and relat 98.3 1.8E-06 3.8E-11 79.9 6.6 133 39-221 47-198 (336)
288 PRK11889 flhF flagellar biosyn 98.3 1.9E-05 4E-10 79.7 14.3 156 38-231 241-401 (436)
289 cd01856 YlqF YlqF. Proteins o 98.2 4.7E-06 1E-10 75.4 8.9 28 37-64 114-141 (171)
290 TIGR01425 SRP54_euk signal rec 98.2 7.9E-06 1.7E-10 83.9 11.4 81 139-230 182-262 (429)
291 TIGR00092 GTP-binding protein 98.2 4.1E-06 8.9E-11 84.1 8.9 103 39-185 3-106 (368)
292 KOG0090 Signal recognition par 98.2 5.3E-06 1.2E-10 75.7 8.6 71 141-224 83-162 (238)
293 KOG1491 Predicted GTP-binding 98.2 2.5E-06 5.4E-11 82.9 6.6 102 37-185 19-123 (391)
294 KOG0087 GTPase Rab11/YPT3, sma 98.2 5.4E-06 1.2E-10 75.4 8.2 121 36-222 12-134 (222)
295 KOG1486 GTP-binding protein DR 98.2 1.6E-06 3.4E-11 80.8 4.8 110 34-207 58-167 (364)
296 COG1161 Predicted GTPases [Gen 98.2 1.2E-06 2.6E-11 87.4 4.2 25 39-63 133-157 (322)
297 PRK12288 GTPase RsgA; Reviewed 98.2 5E-06 1.1E-10 83.7 8.6 25 40-64 207-231 (347)
298 COG0480 FusA Translation elong 98.2 4E-06 8.7E-11 91.0 8.1 135 37-222 9-143 (697)
299 KOG0080 GTPase Rab18, small G 98.2 3E-06 6.4E-11 73.6 5.6 118 37-221 10-131 (209)
300 KOG3883 Ras family small GTPas 98.2 3.2E-05 6.8E-10 66.8 11.6 126 37-229 8-140 (198)
301 PRK12289 GTPase RsgA; Reviewed 98.1 4.2E-06 9.1E-11 84.3 7.1 25 40-64 174-198 (352)
302 KOG0395 Ras-related GTPase [Ge 98.1 1.5E-05 3.2E-10 73.9 10.1 145 38-250 3-151 (196)
303 TIGR00157 ribosome small subun 98.1 1.2E-05 2.6E-10 77.2 8.8 25 39-63 121-145 (245)
304 PF03029 ATP_bind_1: Conserved 98.1 2.7E-06 5.9E-11 81.2 4.1 75 141-222 92-171 (238)
305 cd03112 CobW_like The function 98.1 2.4E-05 5.3E-10 69.9 9.9 23 39-61 1-23 (158)
306 PRK14723 flhF flagellar biosyn 98.1 4.4E-05 9.5E-10 83.3 13.2 152 40-231 187-347 (767)
307 TIGR03597 GTPase_YqeH ribosome 98.1 4.7E-06 1E-10 84.6 5.3 24 39-62 155-178 (360)
308 PF03193 DUF258: Protein of un 98.0 4.2E-06 9.2E-11 74.4 4.3 25 39-63 36-60 (161)
309 PRK13796 GTPase YqeH; Provisio 98.0 5.7E-06 1.2E-10 84.1 5.5 24 39-62 161-184 (365)
310 PRK14722 flhF flagellar biosyn 98.0 1.7E-05 3.8E-10 80.1 8.4 23 39-61 138-160 (374)
311 KOG1532 GTPase XAB1, interacts 98.0 3.7E-05 8E-10 72.8 9.9 154 36-223 17-197 (366)
312 KOG0079 GTP-binding protein H- 98.0 1E-05 2.3E-10 69.3 5.7 120 37-223 7-128 (198)
313 PRK12726 flagellar biosynthesi 98.0 5.9E-05 1.3E-09 75.8 11.7 152 38-231 206-366 (407)
314 PRK10416 signal recognition pa 98.0 2.8E-05 6.1E-10 77.4 9.3 84 139-231 196-283 (318)
315 cd01859 MJ1464 MJ1464. This f 98.0 2.5E-05 5.3E-10 69.5 8.1 26 38-63 101-126 (156)
316 KOG0086 GTPase Rab4, small G p 98.0 4.2E-05 9.2E-10 65.9 8.9 123 35-223 6-130 (214)
317 PF00448 SRP54: SRP54-type pro 98.0 1.1E-05 2.4E-10 74.7 5.6 82 139-231 83-164 (196)
318 KOG1707 Predicted Ras related/ 98.0 4.9E-05 1.1E-09 78.8 10.6 119 38-225 9-133 (625)
319 KOG0071 GTP-binding ADP-ribosy 97.9 6.8E-05 1.5E-09 63.8 9.4 132 38-242 17-154 (180)
320 KOG1424 Predicted GTP-binding 97.9 6.6E-06 1.4E-10 83.9 4.0 26 38-63 314-339 (562)
321 PRK00098 GTPase RsgA; Reviewed 97.9 3.8E-05 8.3E-10 76.0 9.3 25 39-63 165-189 (298)
322 PTZ00099 rab6; Provisional 97.9 2.4E-05 5.2E-10 71.2 7.2 116 139-267 28-145 (176)
323 PRK14974 cell division protein 97.9 8.8E-05 1.9E-09 74.2 11.6 81 140-231 223-303 (336)
324 PRK14721 flhF flagellar biosyn 97.9 0.0002 4.3E-09 73.6 14.4 157 38-231 191-350 (420)
325 PRK06731 flhF flagellar biosyn 97.9 0.00025 5.5E-09 68.8 14.3 155 37-231 74-235 (270)
326 cd01854 YjeQ_engC YjeQ/EngC. 97.9 4.6E-05 1E-09 75.0 8.8 25 39-63 162-186 (287)
327 PRK14845 translation initiatio 97.9 6.3E-05 1.4E-09 85.0 10.8 68 139-221 525-592 (1049)
328 KOG0097 GTPase Rab14, small G 97.8 6.5E-05 1.4E-09 63.8 7.6 123 35-224 8-133 (215)
329 PF04670 Gtr1_RagA: Gtr1/RagA 97.8 8.9E-05 1.9E-09 70.3 9.5 119 40-223 1-127 (232)
330 cd03114 ArgK-like The function 97.8 0.00012 2.6E-09 64.7 9.6 58 139-218 91-148 (148)
331 KOG4252 GTP-binding protein [S 97.8 4.1E-06 9E-11 73.9 -0.0 68 141-223 70-140 (246)
332 COG1217 TypA Predicted membran 97.8 4.1E-05 8.8E-10 77.4 6.8 134 37-224 4-137 (603)
333 PRK12727 flagellar biosynthesi 97.8 6.5E-05 1.4E-09 78.5 8.4 80 140-231 429-508 (559)
334 COG1162 Predicted GTPases [Gen 97.8 5.6E-05 1.2E-09 73.5 7.4 22 40-61 166-187 (301)
335 PRK05703 flhF flagellar biosyn 97.8 0.00034 7.3E-09 72.5 13.7 82 140-231 300-381 (424)
336 KOG0074 GTP-binding ADP-ribosy 97.8 0.00015 3.2E-09 61.9 8.9 115 38-222 17-134 (185)
337 KOG0462 Elongation factor-type 97.8 5.9E-05 1.3E-09 77.6 7.8 135 37-223 59-193 (650)
338 PRK12724 flagellar biosynthesi 97.8 0.00034 7.4E-09 71.5 13.2 85 139-231 299-383 (432)
339 TIGR00064 ftsY signal recognit 97.8 4.9E-05 1.1E-09 74.1 6.8 84 139-231 154-241 (272)
340 COG5192 BMS1 GTP-binding prote 97.7 0.0001 2.2E-09 75.9 8.6 73 134-224 107-180 (1077)
341 KOG0468 U5 snRNP-specific prot 97.7 0.00015 3.3E-09 76.0 9.9 133 38-220 128-262 (971)
342 KOG0081 GTPase Rab27, small G 97.7 1.3E-05 2.8E-10 69.5 1.5 99 140-255 67-172 (219)
343 KOG0076 GTP-binding ADP-ribosy 97.7 5.7E-05 1.2E-09 66.7 5.4 111 139-262 68-185 (197)
344 COG4108 PrfC Peptide chain rel 97.7 0.00022 4.8E-09 71.7 9.5 136 37-222 11-148 (528)
345 PRK00771 signal recognition pa 97.7 0.0002 4.2E-09 74.2 9.4 81 140-231 176-256 (437)
346 COG1419 FlhF Flagellar GTP-bin 97.6 0.00091 2E-08 67.5 13.4 152 38-231 203-362 (407)
347 KOG0458 Elongation factor 1 al 97.6 3.4E-05 7.4E-10 80.0 3.3 101 137-252 252-370 (603)
348 PRK12723 flagellar biosynthesi 97.6 0.00085 1.8E-08 68.5 13.4 81 139-231 254-336 (388)
349 PRK10867 signal recognition pa 97.6 0.00083 1.8E-08 69.5 13.4 81 139-230 183-263 (433)
350 cd03115 SRP The signal recogni 97.6 0.00014 3.1E-09 65.8 6.8 80 139-229 82-161 (173)
351 TIGR00101 ureG urease accessor 97.6 0.0005 1.1E-08 63.9 10.5 23 39-61 2-24 (199)
352 TIGR03348 VI_IcmF type VI secr 97.6 0.00073 1.6E-08 78.8 13.9 57 6-67 82-138 (1169)
353 KOG2485 Conserved ATP/GTP bind 97.6 0.00019 4.1E-09 69.4 7.3 26 37-62 142-167 (335)
354 KOG1144 Translation initiation 97.6 0.0004 8.7E-09 73.8 10.0 130 37-220 474-605 (1064)
355 KOG0072 GTP-binding ADP-ribosy 97.5 0.00017 3.7E-09 61.7 5.8 73 138-223 60-135 (182)
356 COG3640 CooC CO dehydrogenase 97.5 0.0024 5.2E-08 59.7 13.2 85 140-249 134-221 (255)
357 COG0050 TufB GTPases - transla 97.5 0.00048 1E-08 66.0 8.6 131 39-223 13-144 (394)
358 COG0481 LepA Membrane GTPase L 97.4 0.00053 1.1E-08 69.7 8.6 135 37-223 8-144 (603)
359 KOG0077 Vesicle coat complex C 97.4 0.00051 1.1E-08 60.4 7.3 119 34-223 16-137 (193)
360 KOG2484 GTPase [General functi 97.4 0.00014 2.9E-09 72.4 4.2 31 38-68 252-282 (435)
361 PRK06995 flhF flagellar biosyn 97.4 0.0012 2.7E-08 68.9 11.2 81 140-231 335-415 (484)
362 TIGR00073 hypB hydrogenase acc 97.4 0.0009 2E-08 62.5 9.2 25 37-61 21-45 (207)
363 KOG3859 Septins (P-loop GTPase 97.3 0.0007 1.5E-08 64.3 7.9 134 39-223 43-192 (406)
364 TIGR00959 ffh signal recogniti 97.3 0.0017 3.7E-08 67.2 11.4 81 139-230 182-262 (428)
365 COG3276 SelB Selenocysteine-sp 97.3 0.00086 1.9E-08 67.9 8.8 108 140-263 50-161 (447)
366 KOG0088 GTPase Rab21, small G 97.3 0.00048 1.1E-08 59.8 6.0 119 38-223 13-134 (218)
367 KOG1487 GTP-binding protein DR 97.3 0.00039 8.4E-09 65.5 5.2 107 37-207 58-164 (358)
368 KOG1143 Predicted translation 97.2 0.00018 3.8E-09 70.9 2.2 180 5-224 113-320 (591)
369 KOG0780 Signal recognition par 97.1 0.0021 4.5E-08 64.0 8.8 82 138-230 182-263 (483)
370 COG2895 CysN GTPases - Sulfate 97.1 0.0053 1.1E-07 60.5 11.2 147 37-228 5-160 (431)
371 COG0541 Ffh Signal recognition 97.0 0.0077 1.7E-07 61.2 11.9 79 139-229 182-261 (451)
372 PF05879 RHD3: Root hair defec 96.9 0.0014 3E-08 72.5 6.5 22 44-66 1-22 (742)
373 KOG2203 GTP-binding protein [G 96.9 0.0015 3.3E-08 67.3 5.9 27 37-63 36-62 (772)
374 KOG0467 Translation elongation 96.9 0.0024 5.2E-08 68.3 7.4 128 37-219 8-136 (887)
375 KOG0393 Ras-related small GTPa 96.9 0.00063 1.4E-08 62.3 2.4 117 39-222 5-124 (198)
376 KOG0463 GTP-binding protein GP 96.8 0.0018 3.8E-08 64.0 5.5 75 132-222 211-288 (641)
377 KOG0461 Selenocysteine-specifi 96.8 0.01 2.3E-07 58.2 10.5 67 140-225 70-140 (522)
378 PF02492 cobW: CobW/HypB/UreG, 96.8 0.008 1.7E-07 54.7 9.2 22 39-60 1-22 (178)
379 COG5257 GCD11 Translation init 96.8 0.0038 8.2E-08 60.8 7.0 23 40-62 12-34 (415)
380 KOG2423 Nucleolar GTPase [Gene 96.7 0.0023 5E-08 63.7 5.2 24 40-63 309-332 (572)
381 PRK01889 GTPase RsgA; Reviewed 96.7 0.0034 7.3E-08 63.7 6.4 24 40-63 197-220 (356)
382 PRK11537 putative GTP-binding 96.5 0.0095 2.1E-07 59.4 8.1 25 37-61 3-27 (318)
383 KOG1534 Putative transcription 96.4 0.0076 1.7E-07 55.3 6.5 21 41-61 6-26 (273)
384 KOG4181 Uncharacterized conser 96.3 0.047 1E-06 53.8 11.0 26 37-62 187-212 (491)
385 KOG2749 mRNA cleavage and poly 96.2 0.059 1.3E-06 53.4 11.2 42 36-83 101-142 (415)
386 cd01859 MJ1464 MJ1464. This f 96.1 0.012 2.5E-07 52.2 5.6 55 166-222 2-56 (156)
387 PF13555 AAA_29: P-loop contai 95.9 0.0082 1.8E-07 44.4 3.1 22 39-60 24-45 (62)
388 KOG0464 Elongation factor G [T 95.9 0.0022 4.7E-08 64.1 -0.0 135 36-222 35-169 (753)
389 COG3840 ThiQ ABC-type thiamine 95.9 0.0074 1.6E-07 54.4 3.3 29 39-68 26-54 (231)
390 COG5258 GTPBP1 GTPase [General 95.9 0.0062 1.3E-07 60.6 3.1 69 141-223 202-271 (527)
391 COG3523 IcmF Type VI protein s 95.8 0.15 3.3E-06 58.6 14.1 85 140-225 174-274 (1188)
392 PF13521 AAA_28: AAA domain; P 95.7 0.0062 1.3E-07 54.4 2.3 22 40-61 1-22 (163)
393 KOG0460 Mitochondrial translat 95.7 0.025 5.4E-07 55.6 6.5 135 35-223 49-186 (449)
394 COG1341 Predicted GTPase or GT 95.7 0.12 2.7E-06 52.2 11.5 26 36-61 71-96 (398)
395 TIGR02868 CydC thiol reductant 95.7 0.061 1.3E-06 57.6 10.2 48 167-216 479-527 (529)
396 COG1136 SalX ABC-type antimicr 95.6 0.011 2.3E-07 55.7 3.5 53 167-220 151-205 (226)
397 PRK13695 putative NTPase; Prov 95.5 0.062 1.3E-06 48.5 8.2 22 40-61 2-23 (174)
398 PF00005 ABC_tran: ABC transpo 95.5 0.0096 2.1E-07 51.3 2.8 23 40-62 13-35 (137)
399 cd00071 GMPK Guanosine monopho 95.5 0.012 2.6E-07 51.1 3.3 21 41-61 2-22 (137)
400 COG1101 PhnK ABC-type uncharac 95.5 0.011 2.4E-07 54.7 3.1 27 40-67 34-60 (263)
401 TIGR02203 MsbA_lipidA lipid A 95.5 0.18 3.8E-06 54.6 12.8 23 40-62 360-382 (571)
402 KOG1533 Predicted GTPase [Gene 95.4 0.021 4.5E-07 53.4 4.6 19 41-59 5-23 (290)
403 TIGR02475 CobW cobalamin biosy 95.4 0.09 2E-06 53.0 9.6 25 37-61 3-27 (341)
404 cd01130 VirB11-like_ATPase Typ 95.4 0.014 2.9E-07 53.6 3.3 29 40-70 27-55 (186)
405 COG0552 FtsY Signal recognitio 95.3 0.13 2.7E-06 50.9 10.0 84 139-230 221-307 (340)
406 KOG0057 Mitochondrial Fe/S clu 95.3 0.099 2.2E-06 54.7 9.5 22 40-61 380-401 (591)
407 TIGR01360 aden_kin_iso1 adenyl 95.2 0.014 3.1E-07 53.1 3.0 26 37-62 2-30 (188)
408 PF03205 MobB: Molybdopterin g 95.2 0.014 3.1E-07 50.9 2.7 23 39-61 1-23 (140)
409 COG1116 TauB ABC-type nitrate/ 95.2 0.018 4E-07 54.5 3.5 27 40-67 31-57 (248)
410 TIGR03263 guanyl_kin guanylate 95.2 0.019 4.2E-07 51.9 3.7 22 40-61 3-24 (180)
411 TIGR03499 FlhF flagellar biosy 95.1 0.038 8.1E-07 54.2 5.8 23 39-61 195-217 (282)
412 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.021 4.5E-07 50.1 3.4 23 40-62 28-50 (144)
413 PF09547 Spore_IV_A: Stage IV 95.1 0.13 2.8E-06 52.4 9.3 144 40-221 19-194 (492)
414 cd03225 ABC_cobalt_CbiO_domain 95.0 0.022 4.8E-07 53.1 3.7 23 40-62 29-51 (211)
415 cd01855 YqeH YqeH. YqeH is an 95.0 0.1 2.2E-06 47.8 8.0 55 165-223 23-77 (190)
416 cd03261 ABC_Org_Solvent_Resist 95.0 0.022 4.8E-07 54.1 3.7 23 40-62 28-50 (235)
417 TIGR00157 ribosome small subun 95.0 0.013 2.9E-07 56.2 2.2 58 166-223 26-83 (245)
418 cd03280 ABC_MutS2 MutS2 homolo 95.0 0.3 6.5E-06 45.2 11.2 20 40-59 30-49 (200)
419 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.022 4.7E-07 53.5 3.4 23 40-62 32-54 (218)
420 cd01983 Fer4_NifH The Fer4_Nif 95.0 0.19 4E-06 39.7 8.6 20 41-60 2-21 (99)
421 COG0523 Putative GTPases (G3E 94.9 0.1 2.2E-06 52.1 8.3 25 38-62 1-25 (323)
422 PRK00300 gmk guanylate kinase; 94.9 0.021 4.6E-07 52.9 3.2 36 40-75 7-43 (205)
423 cd03264 ABC_drug_resistance_li 94.9 0.023 5E-07 53.0 3.5 22 40-61 27-48 (211)
424 TIGR01166 cbiO cobalt transpor 94.9 0.024 5.1E-07 52.0 3.5 23 40-62 20-42 (190)
425 PRK01889 GTPase RsgA; Reviewed 94.9 0.028 6E-07 57.1 4.2 48 174-222 110-157 (356)
426 COG0410 LivF ABC-type branched 94.9 0.025 5.4E-07 52.9 3.5 23 40-62 31-53 (237)
427 PF06858 NOG1: Nucleolar GTP-b 94.8 0.062 1.3E-06 38.9 4.7 53 166-218 2-58 (58)
428 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.039 8.4E-07 48.9 4.6 51 171-223 3-55 (157)
429 TIGR02673 FtsE cell division A 94.8 0.026 5.6E-07 52.8 3.6 23 40-62 30-52 (214)
430 cd03265 ABC_DrrA DrrA is the A 94.8 0.025 5.4E-07 53.1 3.5 23 40-62 28-50 (220)
431 COG4107 PhnK ABC-type phosphon 94.8 0.025 5.4E-07 50.6 3.2 31 40-72 34-64 (258)
432 cd02019 NK Nucleoside/nucleoti 94.8 0.025 5.5E-07 42.8 2.9 21 41-61 2-22 (69)
433 COG0488 Uup ATPase components 94.8 0.15 3.3E-06 54.4 9.5 35 39-75 30-64 (530)
434 cd03224 ABC_TM1139_LivF_branch 94.8 0.028 6.2E-07 52.8 3.7 23 40-62 28-50 (222)
435 cd03218 ABC_YhbG The ABC trans 94.8 0.029 6.2E-07 53.2 3.7 23 40-62 28-50 (232)
436 TIGR00960 3a0501s02 Type II (G 94.7 0.027 5.8E-07 52.7 3.5 23 40-62 31-53 (216)
437 cd03226 ABC_cobalt_CbiO_domain 94.7 0.029 6.3E-07 52.1 3.7 23 40-62 28-50 (205)
438 cd03269 ABC_putative_ATPase Th 94.7 0.028 6.1E-07 52.4 3.5 23 40-62 28-50 (210)
439 cd03259 ABC_Carb_Solutes_like 94.7 0.03 6.4E-07 52.3 3.7 23 40-62 28-50 (213)
440 PRK11174 cysteine/glutathione 94.7 0.4 8.7E-06 52.1 13.0 25 40-66 378-402 (588)
441 PRK13541 cytochrome c biogenes 94.7 0.03 6.6E-07 51.6 3.7 23 40-62 28-50 (195)
442 cd03263 ABC_subfamily_A The AB 94.7 0.028 6.2E-07 52.7 3.5 23 40-62 30-52 (220)
443 cd03215 ABC_Carb_Monos_II This 94.7 0.032 6.9E-07 50.9 3.7 23 40-62 28-50 (182)
444 cd03258 ABC_MetN_methionine_tr 94.7 0.03 6.6E-07 53.1 3.8 23 40-62 33-55 (233)
445 cd03229 ABC_Class3 This class 94.7 0.032 6.9E-07 50.7 3.7 23 40-62 28-50 (178)
446 COG0194 Gmk Guanylate kinase [ 94.7 0.024 5.3E-07 51.3 2.8 36 40-75 6-41 (191)
447 PF13207 AAA_17: AAA domain; P 94.7 0.024 5.3E-07 47.6 2.7 22 40-61 1-22 (121)
448 PRK13851 type IV secretion sys 94.7 0.026 5.7E-07 56.8 3.4 33 38-72 162-194 (344)
449 TIGR03796 NHPM_micro_ABC1 NHPM 94.7 0.5 1.1E-05 52.6 13.8 49 166-217 623-671 (710)
450 PRK14737 gmk guanylate kinase; 94.7 0.033 7.1E-07 51.1 3.7 24 38-61 4-27 (186)
451 COG4559 ABC-type hemin transpo 94.7 0.03 6.5E-07 51.8 3.3 31 40-72 29-59 (259)
452 PRK11629 lolD lipoprotein tran 94.6 0.029 6.2E-07 53.3 3.5 23 40-62 37-59 (233)
453 cd03293 ABC_NrtD_SsuB_transpor 94.6 0.03 6.4E-07 52.7 3.5 23 40-62 32-54 (220)
454 TIGR02315 ABC_phnC phosphonate 94.6 0.029 6.4E-07 53.5 3.5 23 40-62 30-52 (243)
455 cd03254 ABCC_Glucan_exporter_l 94.6 0.033 7.2E-07 52.6 3.7 23 40-62 31-53 (229)
456 cd03243 ABC_MutS_homologs The 94.6 0.62 1.3E-05 43.1 12.2 22 40-61 31-52 (202)
457 PRK13540 cytochrome c biogenes 94.6 0.034 7.4E-07 51.4 3.7 24 39-62 28-51 (200)
458 PF13191 AAA_16: AAA ATPase do 94.6 0.041 8.9E-07 49.7 4.2 25 37-61 23-47 (185)
459 cd03262 ABC_HisP_GlnQ_permease 94.6 0.034 7.5E-07 51.8 3.8 23 40-62 28-50 (213)
460 cd03292 ABC_FtsE_transporter F 94.6 0.034 7.3E-07 51.9 3.7 23 40-62 29-51 (214)
461 cd03266 ABC_NatA_sodium_export 94.6 0.032 6.9E-07 52.3 3.5 23 40-62 33-55 (218)
462 COG1120 FepC ABC-type cobalami 94.6 0.032 7E-07 53.6 3.5 22 40-61 30-51 (258)
463 PRK13543 cytochrome c biogenes 94.5 0.034 7.4E-07 52.1 3.6 30 40-71 39-68 (214)
464 TIGR01193 bacteriocin_ABC ABC- 94.5 0.5 1.1E-05 52.6 13.4 23 40-62 502-524 (708)
465 cd03232 ABC_PDR_domain2 The pl 94.5 0.036 7.8E-07 51.0 3.7 23 40-62 35-57 (192)
466 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.038 8.2E-07 49.0 3.7 32 39-72 26-57 (157)
467 PRK09270 nucleoside triphospha 94.5 0.041 8.9E-07 52.2 4.2 24 38-61 33-56 (229)
468 cd03219 ABC_Mj1267_LivG_branch 94.5 0.035 7.5E-07 52.7 3.7 23 40-62 28-50 (236)
469 cd03231 ABC_CcmA_heme_exporter 94.5 0.037 8.1E-07 51.3 3.8 24 39-62 27-50 (201)
470 PLN03232 ABC transporter C fam 94.5 0.22 4.9E-06 59.9 11.2 23 40-62 645-667 (1495)
471 cd03222 ABC_RNaseL_inhibitor T 94.5 0.03 6.4E-07 51.0 3.0 24 39-62 26-49 (177)
472 cd03256 ABC_PhnC_transporter A 94.5 0.034 7.3E-07 53.0 3.5 23 40-62 29-51 (241)
473 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.036 7.8E-07 51.5 3.6 30 40-71 36-65 (207)
474 cd03268 ABC_BcrA_bacitracin_re 94.5 0.034 7.5E-07 51.7 3.5 23 40-62 28-50 (208)
475 TIGR03596 GTPase_YlqF ribosome 94.5 0.11 2.4E-06 50.8 7.2 52 167-222 12-63 (276)
476 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.4 0.036 7.7E-07 52.8 3.6 23 40-62 31-53 (238)
477 TIGR01978 sufC FeS assembly AT 94.4 0.04 8.7E-07 52.5 3.9 22 40-61 28-49 (243)
478 PF13671 AAA_33: AAA domain; P 94.4 0.027 5.9E-07 48.7 2.5 21 41-61 2-22 (143)
479 TIGR02857 CydD thiol reductant 94.4 0.081 1.8E-06 56.7 6.7 23 40-62 350-372 (529)
480 COG0411 LivG ABC-type branched 94.4 0.011 2.4E-07 55.6 0.1 26 40-66 32-57 (250)
481 TIGR02211 LolD_lipo_ex lipopro 94.4 0.039 8.4E-07 51.8 3.7 23 40-62 33-55 (221)
482 cd01857 HSR1_MMR1 HSR1/MMR1. 94.4 0.054 1.2E-06 47.1 4.4 53 168-222 3-57 (141)
483 cd03257 ABC_NikE_OppD_transpor 94.4 0.039 8.5E-07 52.0 3.8 23 40-62 33-55 (228)
484 PRK13651 cobalt transporter AT 94.4 0.037 8E-07 54.9 3.7 30 40-71 35-64 (305)
485 PRK15177 Vi polysaccharide exp 94.4 0.037 8.1E-07 51.9 3.5 30 40-71 15-44 (213)
486 PRK11124 artP arginine transpo 94.4 0.038 8.3E-07 52.7 3.7 23 40-62 30-52 (242)
487 cd03301 ABC_MalK_N The N-termi 94.4 0.037 8E-07 51.6 3.5 23 40-62 28-50 (213)
488 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.037 8.1E-07 52.9 3.5 31 40-72 32-62 (254)
489 PRK10895 lipopolysaccharide AB 94.4 0.039 8.5E-07 52.6 3.7 23 40-62 31-53 (241)
490 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.043 9.4E-07 50.8 3.9 23 40-62 28-50 (200)
491 cd03230 ABC_DR_subfamily_A Thi 94.4 0.042 9.2E-07 49.6 3.7 23 40-62 28-50 (173)
492 cd03235 ABC_Metallic_Cations A 94.4 0.038 8.3E-07 51.6 3.5 23 40-62 27-49 (213)
493 PRK14250 phosphate ABC transpo 94.3 0.041 8.8E-07 52.6 3.8 23 40-62 31-53 (241)
494 PRK12289 GTPase RsgA; Reviewed 94.3 0.054 1.2E-06 54.8 4.8 56 167-222 80-135 (352)
495 cd03253 ABCC_ATM1_transporter 94.3 0.04 8.6E-07 52.3 3.6 23 40-62 29-51 (236)
496 PRK13539 cytochrome c biogenes 94.3 0.042 9.1E-07 51.2 3.7 23 40-62 30-52 (207)
497 cd03223 ABCD_peroxisomal_ALDP 94.3 0.045 9.7E-07 49.1 3.7 23 40-62 29-51 (166)
498 TIGR03410 urea_trans_UrtE urea 94.3 0.042 9.1E-07 52.0 3.8 23 40-62 28-50 (230)
499 PRK10908 cell division protein 94.3 0.042 9.1E-07 51.7 3.7 24 39-62 29-52 (222)
500 PRK11248 tauB taurine transpor 94.3 0.042 9E-07 53.0 3.8 23 40-62 29-51 (255)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.7e-75 Score=619.93 Aligned_cols=444 Identities=47% Similarity=0.698 Sum_probs=417.0
Q ss_pred CchhhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEE
Q 012279 1 MTTMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQL 80 (467)
Q Consensus 1 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~ 80 (467)
|.+|+.+++++|++|++++.++.... ..+|+|+|||+||+||||++|+++|++|||||.|+|||+|+.+++
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~~~~---------i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL 71 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGSSSF---------IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQL 71 (657)
T ss_pred CchhhhccccchHHHHHHHHhcCCCc---------ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeec
Confidence 56899999999999999999994332 599999999999999999999999999999999999999999999
Q ss_pred eecCCCCchhHhhh-cCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCC
Q 012279 81 HKTEDGSQEYAEFL-HLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (467)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~ 159 (467)
.+......+|+.|. |.+..+++||++++++|..+++++.|.++++|+.+|.+++++++++++|+||+||++++++++||
T Consensus 72 ~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp 151 (657)
T KOG0446|consen 72 SIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQP 151 (657)
T ss_pred ccccCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCC
Confidence 99988889999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCC
Q 012279 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (467)
Q Consensus 160 ~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l 239 (467)
+++.+++++|++.|+.+++++||+|++||.|+++++++++++++||.|.||++|+||+|++++|+++.+.+.|..+++++
T Consensus 152 ~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~ 231 (657)
T KOG0446|consen 152 DDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKV 231 (657)
T ss_pred ccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012279 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (467)
Q Consensus 240 g~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~ 319 (467)
||++|+||++++++...++.++...|..||.+++.|+.+..++|+++|.+.|...|..||+.++|.+...|+.++.+.++
T Consensus 232 g~v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~ 311 (657)
T KOG0446|consen 232 GYVGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQD 311 (657)
T ss_pred ceeeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC--------CCCcchhhhcchhhHHHhccCCccccCCHHHHH
Q 012279 320 EMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVK 391 (467)
Q Consensus 320 ~l~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~~~~ri~~~f~~~~~~~~~~~~~~~~~~~~~i~ 391 (467)
++.++|. ..+..+....++.+..+|...+...+.|.. .||+|+++.|++.|+..+.++++.+.....+|+
T Consensus 312 el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~ 389 (657)
T KOG0446|consen 312 ELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIE 389 (657)
T ss_pred HHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHH
Confidence 9999996 222223334466677777777777777762 589999999999999999999999999999999
Q ss_pred HHHHhhCCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 012279 392 KVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQVELYKL 455 (467)
Q Consensus 392 ~ii~~~~g~~p~~~~pe~~f~~li~~~i~~~~~P~~~~~~~v~~~l~~~v~~~~~~~~~~~~~~ 455 (467)
+++.|++|++|++|+|+.+|+.+++++|+++++|+++||+.|+.+|.+++++|...+.+.+||.
T Consensus 390 ~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~ 453 (657)
T KOG0446|consen 390 KLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPV 453 (657)
T ss_pred HHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999884455543
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1.8e-47 Score=361.50 Aligned_cols=239 Identities=62% Similarity=0.975 Sum_probs=223.4
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeec
Q 012279 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (467)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~ 83 (467)
|++|++++++++++++.+|.... .++|+|+|||++|+||||++|+|+|..++|++.|.|||||+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~---------i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~ 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC
Confidence 79999999999999999986543 599999999999999999999999999899999999999999999874
Q ss_pred CCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHH
Q 012279 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~ 163 (467)
.++|+.+++.+++.+.+++++.+.|+..++++.+.+++||+++|.+++++|++++++||||||+...+..+|+.++.
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~ 148 (240)
T smart00053 72 ---STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIE 148 (240)
T ss_pred ---CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHH
Confidence 35678888888888999999999999999999998999999999999999999999999999999877777778888
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEE
Q 012279 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (467)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~ 243 (467)
+.+++++..|++++++|||+|++++.|+.+++++++++.+++.+.||++|+||+|.+++++++.++++|+.+++++||++
T Consensus 149 ~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~ 228 (240)
T smart00053 149 EQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIG 228 (240)
T ss_pred HHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCChhhhcc
Q 012279 244 IVNRSQADINR 254 (467)
Q Consensus 244 V~~~s~~~~~~ 254 (467)
|+||++++++.
T Consensus 229 v~nr~~~d~~~ 239 (240)
T smart00053 229 VVNRSQKDIEG 239 (240)
T ss_pred EECCChHHhhc
Confidence 99999988753
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.5e-37 Score=306.50 Aligned_cols=222 Identities=32% Similarity=0.494 Sum_probs=200.5
Q ss_pred HHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHH
Q 012279 226 ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPS 305 (467)
Q Consensus 226 ~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~ 305 (467)
+.+++.|+.+++++||++|+|||++|+....++.++...|..||.++|+|+.+++++|+++|+.+|++.|.+||+++||.
T Consensus 1 ~~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~ 80 (295)
T PF01031_consen 1 AMDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPS 80 (295)
T ss_dssp SHHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcH
Confidence 36889999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCC---------CCcchhhhcchhhHHHh
Q 012279 306 ITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP---------GGDRIYGVFDNQLPAAL 376 (467)
Q Consensus 306 ~~~~i~~~l~~~~~~l~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~---------~~~ri~~~f~~~~~~~~ 376 (467)
++.+|++.+.+++.+|++||++++.+..++..++++++.+|++.+.++++|.+. +|+++.++|++.+...+
T Consensus 81 l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~ 160 (295)
T PF01031_consen 81 LKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFL 160 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhh
Confidence 999999999999999999999988777888889999999999999999999985 57899999999999999
Q ss_pred ccCCccccCCHHHHHHHHHhhCCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhH
Q 012279 377 RKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGE 447 (467)
Q Consensus 377 ~~~~~~~~~~~~~i~~ii~~~~g~~p~~~~pe~~f~~li~~~i~~~~~P~~~~~~~v~~~l~~~v~~~~~~ 447 (467)
.+.++....++++|++++++++|+++++|+|+.+|+.||++++++|++|+..|++.|+++|.+++.+++..
T Consensus 161 ~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~ 231 (295)
T PF01031_consen 161 EKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEK 231 (295)
T ss_dssp HHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcch
Confidence 98888778899999999999999999999999999999999999999999999999999999999999887
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=270.18 Aligned_cols=301 Identities=28% Similarity=0.458 Sum_probs=235.5
Q ss_pred HHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCch
Q 012279 11 VNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQE 89 (467)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~ 89 (467)
+.-..++++.|...... + ...-.||+|||||+|||||+|+|+.+....+||||+| ..||.|+.+.+...+ -+
T Consensus 285 IDMYSEVLD~Ls~YD~s---Y-nt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGP---yH 357 (980)
T KOG0447|consen 285 IDMYSEVLDVLSDYDAS---Y-NTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGP---HH 357 (980)
T ss_pred HHHHHHHHHHHhccccc---c-cccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCc---ch
Confidence 34445666666654321 1 1224799999999999999999999999999999998 689999999986543 33
Q ss_pred hHhhhcCCC----CcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHH
Q 012279 90 YAEFLHLPK----RRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED 165 (467)
Q Consensus 90 ~~~~~~~~~----~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~ 165 (467)
.+.|....+ .+.+|+.+++++++-.+......++.+|+..|.+.+.+|+.+.+++||+||+++..+.+...+..+.
T Consensus 358 VAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~ 437 (980)
T KOG0447|consen 358 VALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKET 437 (980)
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHH
Confidence 344433322 2346888999999998887777789999999999999999999999999999998777777777788
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC----CcHHHHhcCcccccC-CC
Q 012279 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG----TNALDVLEGRSYRLQ-HP 240 (467)
Q Consensus 166 i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~----~~~~~~l~~~~~~l~-lg 240 (467)
+-.|.+.|+++|++||||+.+...|...+-.-.+..++||.|.|||+|+||.|+.++. ....+++.|+..|++ +|
T Consensus 438 I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALG 517 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALG 517 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcc
Confidence 9999999999999999999999999988888889999999999999999999998653 235788999988885 89
Q ss_pred eEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCCch---hhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012279 241 WVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL---AGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEEL 317 (467)
Q Consensus 241 ~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~---~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~ 317 (467)
||+|+.-.+ +...++.+-+.-|.+||.++..+..- ++.+.+.+|.-.++.-++..+++.+....+.....--.+
T Consensus 518 YfaVVTGrG---nssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFNL 594 (980)
T KOG0447|consen 518 YFAVVTGKG---NSSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFNL 594 (980)
T ss_pred eeEEEecCC---CcchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999886433 23345556667788999886554432 466777888888888888888887766555544433344
Q ss_pred HHHH
Q 012279 318 ESEM 321 (467)
Q Consensus 318 ~~~l 321 (467)
+.|.
T Consensus 595 EtEW 598 (980)
T KOG0447|consen 595 ETEW 598 (980)
T ss_pred hhhh
Confidence 4443
No 5
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.90 E-value=1.8e-23 Score=189.02 Aligned_cols=167 Identities=36% Similarity=0.509 Sum_probs=134.0
Q ss_pred EEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCch-hHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE-YAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
|+|+|.+|||||||+|+|+|.+++|++.++||++|++++..+.+..... +..........+.++.++...+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7999999999999999999999999999999999999999877653311 111111124566789999999988887777
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+....++...+.+....+...+++||||||+.+..... .+++.+|+.++| ++++|++++.++...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d-~vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKAD-VVIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTE-EEEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCC-EEEEEeccCcccchHHHHHH
Confidence 66677888888888999999999999999998743221 378999997776 77788899998888888889
Q ss_pred HHHhCCCCCceEEEeccC
Q 012279 200 AREVDPTGERTFGVLTKL 217 (467)
Q Consensus 200 ~~~~d~~~~rti~VltK~ 217 (467)
.+..++...++++|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=192.81 Aligned_cols=206 Identities=20% Similarity=0.373 Sum_probs=153.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
...|++||.||+|||||+|+|+|..+ .++|+.|. .+..+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~Q------------------------------------TTR~~ 44 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQ------------------------------------TTRNR 44 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCcc------------------------------------hhhhh
Confidence 45799999999999999999999998 78888872 13344
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
+.| |+..+..+++||||||++... ....+.+.+.+.+.+...| +||+|++++..+...+..
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~d~~ 105 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKPK-----HALGELMNKAARSALKDVD-LILFVVDADEGWGPGDEF 105 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhccCc-EEEEEEeccccCCccHHH
Confidence 555 666678899999999999842 2356677788899999999 677788888766555544
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCCh---hhhccCccHHHHHHHHHhhhccCCC
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ---ADINRNIDMIVARRKEREYFATSPD 274 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~---~~~~~~~~~~~~~~~e~~~f~~~~~ 274 (467)
++..+.....|.++++||+|...+......+.. ......+|..+++.|+ .+++.+.+.+.....|.++++....
T Consensus 106 -il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 106 -ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred -HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 555555556899999999999987764333332 2233344545555555 4555566666667778888888777
Q ss_pred CCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012279 275 YGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSL 309 (467)
Q Consensus 275 ~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~ 309 (467)
+++.+.++ ...+.+++.+...++++||+....
T Consensus 183 itD~~~rf---~~aEiiREk~~~~l~eElPhsv~V 214 (298)
T COG1159 183 ITDRPERF---LAAEIIREKLLLLLREELPHSVAV 214 (298)
T ss_pred ccCChHHH---HHHHHHHHHHHHhcccccCceEEE
Confidence 78777777 667999999999999999986653
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=2.9e-19 Score=174.24 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=128.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.|+++|.+|+|||||+|+|+|.++-..+. ..+||.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i------------------------------------------ 39 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI------------------------------------------ 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE------------------------------------------
Confidence 68999999999999999999988622111 11222221
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
. .+...+..++.|+||||+.... ....+.+.+.+..++..+|.+++ |++++..... + ..
T Consensus 40 ------------~-~i~~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl~-VvD~~~~~~~-~-~~ 98 (270)
T TIGR00436 40 ------------S-GIHTTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLILF-VVDSDQWNGD-G-EF 98 (270)
T ss_pred ------------E-EEEEcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEEE-EEECCCCCch-H-HH
Confidence 0 1222334579999999998631 22334455567788999995555 5555543322 2 33
Q ss_pred HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccC-CCeEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCCc
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGH 277 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-lg~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~ 277 (467)
+...+...+.|+++|+||+|+.++.. ..+.......... ..++++++..+.+++...+.+.....+.++++......+
T Consensus 99 i~~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 99 VLTKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 44555556789999999999975332 2211110000111 256778887777777766666665556666555554555
Q ss_pred hhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012279 278 LAGKMGSEYLAKLLSKHLESVIRSRIPSITSLIN 311 (467)
Q Consensus 278 ~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~ 311 (467)
.+.++ ...+.+++.++.++++++|+......
T Consensus 178 ~~~~~---~~~e~ire~~~~~~~~e~p~~~~~~~ 208 (270)
T TIGR00436 178 QPDRF---KISEIIREKIIRYTKEEIPHSVRVEI 208 (270)
T ss_pred CCHHH---HHHHHHHHHHHHhcccccCceEEEEE
Confidence 54444 66789999999999999998665433
No 8
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.6e-18 Score=180.79 Aligned_cols=309 Identities=16% Similarity=0.161 Sum_probs=169.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|+||+||||++|+|+|.+. .+.++| ..+.++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~VgNwp------------------------------------GvTVEkk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KVGNWP------------------------------------GVTVEKK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------eecCCC------------------------------------CeeEEEE
Confidence 4599999999999999999999985 233333 3334444
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCC-eEEEEEecCCcccccHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN-SVILAISPANQDIATSDAM 197 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~-~iIL~V~~a~~d~~~~~~l 197 (467)
.| ........+.+||+||+++.... +.. +.++++|+.+.+ ++|+.|+||.+ -++++
T Consensus 42 eg-------------~~~~~~~~i~ivDLPG~YSL~~~----S~D---E~Var~~ll~~~~D~ivnVvDAtn---LeRnL 98 (653)
T COG0370 42 EG-------------KLKYKGHEIEIVDLPGTYSLTAY----SED---EKVARDFLLEGKPDLIVNVVDATN---LERNL 98 (653)
T ss_pred EE-------------EEEecCceEEEEeCCCcCCCCCC----Cch---HHHHHHHHhcCCCCEEEEEcccch---HHHHH
Confidence 44 22233456999999999997632 333 455999976332 47778888776 77899
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCCc
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGH 277 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~ 277 (467)
++.-++-+.|.|+++++|++|...+....+|.-+ ....++.+.++++.+.++++++.++........+.. .-...|..
T Consensus 99 yltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~-L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~~-~~~~~y~~ 176 (653)
T COG0370 99 YLTLQLLELGIPMILALNMIDEAKKRGIRIDIEK-LSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKTT-PREVDYGE 176 (653)
T ss_pred HHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHH-HHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccccc-ccccccch
Confidence 9999999999999999999999987654444321 123445555555665555544333322221111110 11111221
Q ss_pred hhhccChHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcC
Q 012279 278 LAGKMGSEYLAKLLSKHLESVIRSRIPSI-TSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDG 356 (467)
Q Consensus 278 ~~~~~g~~~L~~~L~~~L~~~i~~~lP~~-~~~i~~~l~~~~~~l~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g 356 (467)
. . .+. ..++. .++.. +-...+.+ +..+-.+..-.... .+ +.++.+.+.+....
T Consensus 177 ~---i-----e~~-----i~~l~-~~~~~~r~lai~lL-~~~~~~~~~~~~~~----~~-------~~~~~~~l~~~~~~ 230 (653)
T COG0370 177 E---I-----EEE-----IKELE-ALSEDPRWLAIKLL-EDDELVEAVLKEPE----KR-------VEELLEELSEEEGH 230 (653)
T ss_pred H---H-----HHH-----HHHHH-hhcchhHHHHHHHh-cChHHHHHHhccch----hh-------HHHHHHHhhhhccc
Confidence 1 1 111 11111 11110 11111222 11111111111000 00 11111111111000
Q ss_pred CCCCCcchhhhcchhhHHHhccCCccccCCHHHHHHHHHhhCCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 012279 357 GRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFV 436 (467)
Q Consensus 357 ~~~~~~ri~~~f~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~g~~p~~~~pe~~f~~li~~~i~~~~~P~~~~~~~v~~~ 436 (467)
...--+..|...++.....+......+...++.+|++++|--=.-|-++ +.-.++-+..-.|-.|-...+|..+..
T Consensus 231 ~~~i~~~ry~~~~~i~~~~v~~~~~~~~slt~~iD~vllh~~lG~pifl----~vm~l~F~~~f~~g~pl~dlid~~f~~ 306 (653)
T COG0370 231 LLLIADARYALIERILRSVVKQEEEEKSSLTDKIDRVLLHPVLGLPIFL----LVMFLMFQLTFTIGGPLSDLIDGGFGA 306 (653)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccccccHHHHhhHHHhchHHHHHHHH----HHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 0000012266666777777765555556678899999986322113222 334667778888999999999998887
Q ss_pred HHHHHHHH
Q 012279 437 LKELVRKS 444 (467)
Q Consensus 437 l~~~v~~~ 444 (467)
+.+.|.+.
T Consensus 307 l~~~v~~~ 314 (653)
T COG0370 307 LIEWVAQI 314 (653)
T ss_pred HHHHHHhh
Confidence 77777665
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=5.8e-19 Score=156.04 Aligned_cols=147 Identities=25% Similarity=0.373 Sum_probs=91.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.||+|||||+|+|+|.+. .++.+|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~------~v~n~p-------------------------------------------- 31 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ------KVGNWP-------------------------------------------- 31 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE------EEEEST--------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------eecCCC--------------------------------------------
Confidence 699999999999999999999984 223333
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
|.+. +...-.+. .....+.||||||+++... .+.. +.++++|+ .++| +|++|++|++ .++.+
T Consensus 32 G~Tv----~~~~g~~~-~~~~~~~lvDlPG~ysl~~----~s~e---e~v~~~~l~~~~~D-~ii~VvDa~~---l~r~l 95 (156)
T PF02421_consen 32 GTTV----EKKEGIFK-LGDQQVELVDLPGIYSLSS----KSEE---ERVARDYLLSEKPD-LIIVVVDATN---LERNL 95 (156)
T ss_dssp TSSS----EEEEEEEE-ETTEEEEEEE----SSSSS----SSHH---HHHHHHHHHHTSSS-EEEEEEEGGG---HHHHH
T ss_pred CCCe----eeeeEEEE-ecCceEEEEECCCcccCCC----CCcH---HHHHHHHHhhcCCC-EEEEECCCCC---HHHHH
Confidence 1111 00010112 1236899999999998642 2332 35578886 4667 5666677765 56778
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhc
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~ 253 (467)
.++.++...|.|+++|+||+|.+.+....++.-. ....++.+.+++++++.++++
T Consensus 96 ~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~-Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 96 YLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEK-LSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp HHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHH-HHHHHTS-EEEEBTTTTBTHH
T ss_pred HHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHH-HHHHhCCCEEEEEeCCCcCHH
Confidence 8999999999999999999999876553322110 112234455566666555543
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=3.3e-18 Score=168.71 Aligned_cols=209 Identities=19% Similarity=0.299 Sum_probs=125.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
...|+|+|.+|||||||+|+|+|.++ ..++..|.. +...
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~~t------------------------------------t~~~ 43 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKPQT------------------------------------TRHR 43 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCce-----eecCCCCCc------------------------------------cccc
Confidence 45699999999999999999999886 233333210 0000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
.. .+...+..+++|+||||+.... ....+.+...+..++..+|+++++ ++++..+ .....
T Consensus 44 i~-------------~i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D~il~v-vd~~~~~-~~~~~ 103 (292)
T PRK00089 44 IR-------------GIVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVDLVLFV-VDADEKI-GPGDE 103 (292)
T ss_pred EE-------------EEEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCCEEEEE-EeCCCCC-ChhHH
Confidence 00 1223334689999999997632 123344556677888999965554 5555433 23334
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCccccc-CCCeEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCC
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL-QHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYG 276 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~ 276 (467)
.++..+...+.|+++|+||+|+..........+....... ...++.+++..+.+++...+.+.....+.++++.....+
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~t 183 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQIT 183 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4555565557899999999999844322222221110001 123455555555555555555544444444444433344
Q ss_pred chhhccChHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 012279 277 HLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLI 310 (467)
Q Consensus 277 ~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i 310 (467)
+.+.+. ...+.+++.+..++++++|+..+..
T Consensus 184 d~~~r~---~~~EiiRe~~~~~l~~e~p~~~~v~ 214 (292)
T PRK00089 184 DRPERF---LAAEIIREKLLRLLGDELPYSVAVE 214 (292)
T ss_pred CCCHHH---HHHHHHHHHHHhhCCccCCceEEEE
Confidence 333333 5678889999999999999875543
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.72 E-value=2.9e-17 Score=164.82 Aligned_cols=211 Identities=18% Similarity=0.258 Sum_probs=136.3
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
..|+++|.+|+|||||+|+|+|..+ ..++..|
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~------------------------------------------- 84 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKV------------------------------------------- 84 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCC-------------------------------------------
Confidence 3899999999999999999999876 2222222
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
+.+.. .+. .+...+..++.||||||+.... ..+...+.+.+..++..+|++++++ ++...+...+ ..
T Consensus 85 -~tTr~----~~~-~~~~~~~~qi~~~DTpG~~~~~-----~~l~~~~~r~~~~~l~~aDvil~Vv-D~~~s~~~~~-~~ 151 (339)
T PRK15494 85 -QTTRS----IIT-GIITLKDTQVILYDTPGIFEPK-----GSLEKAMVRCAWSSLHSADLVLLII-DSLKSFDDIT-HN 151 (339)
T ss_pred -CCccC----cEE-EEEEeCCeEEEEEECCCcCCCc-----ccHHHHHHHHHHHHhhhCCEEEEEE-ECCCCCCHHH-HH
Confidence 00000 000 1112234578999999996521 1233344555667788999666654 5544443322 23
Q ss_pred HHHHhCCCCCceEEEeccCcccCCCC-cHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCCc
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGH 277 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~ 277 (467)
++..+...+.+.|+|+||+|+.+... +..+.+.. ......++++++.++.+++..++.+.....|.++++....+++
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td 229 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITD 229 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 45555555678899999999864311 11122210 1111346788888888888888888888888888888777777
Q ss_pred hhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012279 278 LAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIE 315 (467)
Q Consensus 278 ~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~ 315 (467)
.+.++ ...+.+++.++.++.+++|+..+.....+.
T Consensus 230 ~~~~~---~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~ 264 (339)
T PRK15494 230 LPMRF---IAAEITREQLFLNLQKELPYKLTVQTEKWE 264 (339)
T ss_pred CCHHH---HHHHHHHHHHHhhCCcccCceEEEEEEEEE
Confidence 76665 667899999999999999997665444333
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4.6e-15 Score=149.18 Aligned_cols=154 Identities=25% Similarity=0.363 Sum_probs=105.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
.+--.||++|.||+|||||||+|+|.+. .+||..|
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~---------------------------------------- 249 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA---------------------------------------- 249 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC----------------------------------------
Confidence 5667899999999999999999999998 8888877
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHH-HHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~-~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
|++..+-...+. -++.++.++||.|+.. +.+..+.+- +-+++.++++| +||+|.+++..+...
T Consensus 250 ----GTTRDviee~i~-----i~G~pv~l~DTAGiRe------t~d~VE~iGIeRs~~~i~~AD-lvL~v~D~~~~~~~~ 313 (454)
T COG0486 250 ----GTTRDVIEEDIN-----LNGIPVRLVDTAGIRE------TDDVVERIGIERAKKAIEEAD-LVLFVLDASQPLDKE 313 (454)
T ss_pred ----CCccceEEEEEE-----ECCEEEEEEecCCccc------CccHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCchh
Confidence 433332222222 2457899999999986 445544432 55777899999 777788888754333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCcc
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~ 257 (467)
+. .+.. ..+.+.++++|+||.|+..+...... ....+..+..++...+.+++.+..
T Consensus 314 d~-~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 314 DL-ALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred hH-HHHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHH
Confidence 33 2333 55678999999999999976532111 122333467777777766554433
No 13
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-16 Score=150.68 Aligned_cols=211 Identities=15% Similarity=0.229 Sum_probs=130.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..-+|+|||.||+|||||.|.++|.++.|++.-+-|. +.
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT-----------------------------------------r~ 109 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT-----------------------------------------RH 109 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccce-----------------------------------------ee
Confidence 3458999999999999999999999996554433211 11
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-ccccHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIATSD 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~-d~~~~~ 195 (467)
++.| ++..+..++.|+||||+.......+ ..+...+..-.++.++++|+++++++.++. ..-.-.
T Consensus 110 ~ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~ 175 (379)
T KOG1423|consen 110 RILG-------------IITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR 175 (379)
T ss_pred eeeE-------------EEecCceEEEEecCCcccccchhhh-HHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH
Confidence 1223 6666678999999999998543211 112222334567779999976666554432 222344
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCCCcHH---HHhcCc--------------------ccccCCCe------EEEEe
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNAL---DVLEGR--------------------SYRLQHPW------VGIVN 246 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~---~~l~~~--------------------~~~l~lg~------~~V~~ 246 (467)
.|...+.+. ..+.|.|+||+|...+..... +.+.+. .++...|| |.|+.
T Consensus 176 vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSa 253 (379)
T KOG1423|consen 176 VLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSA 253 (379)
T ss_pred HHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEec
Confidence 566666664 578899999999987655322 122111 11223456 45666
Q ss_pred CChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHH
Q 012279 247 RSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSIT 307 (467)
Q Consensus 247 ~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~ 307 (467)
..+.++++...++-..+..++|.+..... .+........+.+++.|.+|+.+++|+-.
T Consensus 254 L~G~GikdlkqyLmsqa~~gpW~y~a~i~---T~~s~e~l~~e~VReklLd~~pqEVPY~l 311 (379)
T KOG1423|consen 254 LYGEGIKDLKQYLMSQAPPGPWKYPADIV---TEESPEFLCSESVREKLLDHLPQEVPYNL 311 (379)
T ss_pred ccccCHHHHHHHHHhcCCCCCCCCCcccc---cccCHHHHHHHHHHHHHHhhCccccCcce
Confidence 66666666555555444444333332211 23333445678889999999999999854
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.67 E-value=3.2e-16 Score=157.03 Aligned_cols=155 Identities=26% Similarity=0.339 Sum_probs=104.1
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
|.|++||.||+|||||+|+|+|.+. .++...| + .++++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~p---------G---------------------------vTRDr~ 42 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTP---------G---------------------------VTRDRI 42 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCC---------C---------------------------CccCCc
Confidence 8999999999999999999999886 4444444 0 011111
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
.+ ... .....+.+|||+|+.... +..+.+.+.+.+...+.++| +||+|+++..++ +.....
T Consensus 43 y~------------~~~-~~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eAD-vilfvVD~~~Gi-t~~D~~ 103 (444)
T COG1160 43 YG------------DAE-WLGREFILIDTGGLDDGD----EDELQELIREQALIAIEEAD-VILFVVDGREGI-TPADEE 103 (444)
T ss_pred cc------------eeE-EcCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCC-CHHHHH
Confidence 12 111 123459999999998643 35678889999999999999 566667777777 445556
Q ss_pred HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCC-eEEEEeCChhhhccCccH
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDM 258 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~V~~~s~~~~~~~~~~ 258 (467)
+++.+.+.++|+|+|+||+|..+......+. +.+++| .++++.-.+.++.++.+.
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----yslG~g~~~~ISA~Hg~Gi~dLld~ 159 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYEF-----YSLGFGEPVPISAEHGRGIGDLLDA 159 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHHH-----HhcCCCCceEeehhhccCHHHHHHH
Confidence 8888888789999999999987443333333 444443 223444333444443333
No 15
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=1e-14 Score=151.89 Aligned_cols=178 Identities=19% Similarity=0.277 Sum_probs=101.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchh---Hhhhc------------CC----
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEY---AEFLH------------LP---- 97 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~---~~~~~------------~~---- 97 (467)
.-|.++|+|..|+|||||+|+|+|..++|.+...+|.+|+.++.........-+ ..|.. ..
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl 147 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHL 147 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHH
Confidence 448999999999999999999999999999999999999977654322111000 00000 00
Q ss_pred ---CCcccChHHHHHHHHHHH--------------------h--hh---cCCC------CCcCC-CcEEEEeecCC----
Q 012279 98 ---KRRFTDFSMVRKEIQDET--------------------D--RV---TGKT------KQISP-IPIHLSIYSPN---- 138 (467)
Q Consensus 98 ---~~~~~~~~~v~~~i~~~~--------------------~--~~---~g~~------~~~s~-~~i~l~i~~~~---- 138 (467)
.....|...+...+++.. + ++ .+.. ..|-. ..|.++.....
T Consensus 148 ~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~ 227 (741)
T PRK09866 148 TDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLES 227 (741)
T ss_pred HHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccc
Confidence 000012222221111110 0 00 0100 01110 12223322222
Q ss_pred -CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC--CceEEEec
Q 012279 139 -VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG--ERTFGVLT 215 (467)
Q Consensus 139 -~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~--~rti~Vlt 215 (467)
..+++||||||+.+... ..+..+..+.+..+| +||+|++++......+ ..+++.+...+ .|+++|+|
T Consensus 228 ~~~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eAD-vVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVN 297 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARAS-AVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVN 297 (741)
T ss_pred ccCCEEEEECCCCCCccc--------hHHHHHHHHHHhhCC-EEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEE
Confidence 37999999999986321 113333445799999 6677777766443333 34666666555 49999999
Q ss_pred cCcccCCCC
Q 012279 216 KLDLMDKGT 224 (467)
Q Consensus 216 K~D~~~~~~ 224 (467)
|+|+.+...
T Consensus 298 KIDl~dree 306 (741)
T PRK09866 298 KFDQQDRNS 306 (741)
T ss_pred cccCCCccc
Confidence 999976443
No 16
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.61 E-value=3.2e-15 Score=163.70 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=96.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+++|++|+|||||+|+|+|.+. ..+ +.|
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vg-----n~p------------------------------------------ 34 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVG-----NWA------------------------------------------ 34 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccC-----CCC------------------------------------------
Confidence 35799999999999999999999864 111 111
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSD 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~ 195 (467)
|. +.+...-.+ ..+...+.+|||||+++......+.+..+. +++.|+. ++|.+ ++|+++++ .++
T Consensus 35 --Gv----Tve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~aD~v-I~VvDat~---ler 100 (772)
T PRK09554 35 --GV----TVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDADLL-INVVDASN---LER 100 (772)
T ss_pred --Cc----eEeeEEEEE-EcCceEEEEEECCCccccccccccccHHHH---HHHHHHhccCCCEE-EEEecCCc---chh
Confidence 10 000011112 223457999999999885432222233333 4667754 67755 55566654 234
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
.+.+..++...+.|+++|+||+|+.++.....+. +.....++.+++++..+..+++++..+..
T Consensus 101 ~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~I 163 (772)
T PRK09554 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLAI 163 (772)
T ss_pred hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 5667777777899999999999987554332222 11123345566777777776655544433
No 17
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=4.8e-15 Score=142.35 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=112.6
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeec
Q 012279 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (467)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~ 83 (467)
.+.+..+++++.+-+.-+++.-.--..||.+..++|+|+|.|.||+|||||+++|++.+. -+-.+|
T Consensus 134 ~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~YP-------- 199 (346)
T COG1084 134 FGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPYP-------- 199 (346)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCCC--------
Confidence 455667777877777777654333567788888999999999999999999999999874 111222
Q ss_pred CCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHH
Q 012279 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~ 163 (467)
|+.+.|.+-....+...+.+|||||+-+-+ .+-.
T Consensus 200 -----------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRP-----l~Er 233 (346)
T COG1084 200 -----------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRP-----LEER 233 (346)
T ss_pred -----------------------------------------ccccceeEeeeecCCceEEEecCCcccCCC-----hHHh
Confidence 444455555666666789999999998743 3333
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCc--ccccHHHHHHHHHhCCC-CCceEEEeccCcccCCC
Q 012279 164 EDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPT-GERTFGVLTKLDLMDKG 223 (467)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d~~-~~rti~VltK~D~~~~~ 223 (467)
..++..+-..+++-+++||++.+++. .+.-.+-..|..++.+. ..+++.|+||+|..+.+
T Consensus 234 N~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 234 NEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred cHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 44666666666666667777776554 34444455567776654 46899999999999654
No 18
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.4e-14 Score=147.58 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-+..|++||.||||||||||+|++...-......+|+.|+.-.
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi------------------------------------- 200 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV------------------------------------- 200 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE-------------------------------------
Confidence 3568999999999999999999997642223344666663211
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC----cccc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN----QDIA 192 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~----~d~~ 192 (467)
+..++...++|+||||+...+..+ ..+.....+++++++.+++++ ++. .+.
T Consensus 201 -----------------v~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l~~i~radvlL~VV-D~s~~~~~d~- 255 (390)
T PRK12298 201 -----------------VRVDDERSFVVADIPGLIEGASEG------AGLGIRFLKHLERCRVLLHLI-DIAPIDGSDP- 255 (390)
T ss_pred -----------------EEeCCCcEEEEEeCCCccccccch------hhHHHHHHHHHHhCCEEEEEe-ccCcccccCh-
Confidence 222233469999999998744221 112222335788889655554 443 121
Q ss_pred cHHHHHHHHHhCC-----CCCceEEEeccCcccCCCCcHHHHhcCc--ccccCCCeEEEEeCChhhhccCccHHHHHHHH
Q 012279 193 TSDAMKLAREVDP-----TGERTFGVLTKLDLMDKGTNALDVLEGR--SYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (467)
Q Consensus 193 ~~~~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~~e 265 (467)
..+...+.+++.. ...|.++|+||+|+.+... ..+.+... .......++.+++.+..+++...+.+.....+
T Consensus 256 ~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 256 VENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 1222233343332 2589999999999875432 22222110 11111245677777777776666666555555
Q ss_pred HhhhccCCCCCchh
Q 012279 266 REYFATSPDYGHLA 279 (467)
Q Consensus 266 ~~~f~~~~~~~~~~ 279 (467)
.++++....+++.+
T Consensus 335 ~~~~~~~~~~td~~ 348 (390)
T PRK12298 335 NPREEAEEAEAPEK 348 (390)
T ss_pred CcccCCcccccCcc
Confidence 55544444444433
No 19
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=128.91 Aligned_cols=130 Identities=25% Similarity=0.403 Sum_probs=92.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..+|.|+++|..|+||||+||+|+|..-|.|-+.++
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktP-------------------------------------------- 57 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTP-------------------------------------------- 57 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCC--------------------------------------------
Confidence 378999999999999999999999977444433321
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCC--eEEEEEecCCccccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN--SVILAISPANQDIAT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~--~iIL~V~~a~~d~~~ 193 (467)
|.+.. +..+..+ ..+.|||+||+.-... |+...+.+..++.+|++.-. ..++.++++...+ .
T Consensus 58 ----GrTq~-------iNff~~~-~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~-~ 121 (200)
T COG0218 58 ----GRTQL-------INFFEVD-DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP-K 121 (200)
T ss_pred ----Cccce-------eEEEEec-CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC-c
Confidence 21110 1112222 2388999999987544 66778889999999998643 2334456776665 3
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCCc
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN 225 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 225 (467)
....++...+...+.++++|+||+|.+..+..
T Consensus 122 ~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 122 DLDREMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 33446888888889999999999999987643
No 20
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.57 E-value=8.6e-14 Score=140.11 Aligned_cols=127 Identities=21% Similarity=0.327 Sum_probs=84.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...|+|++||.+|+|||||+|+|+|.++...+....|+-|+.-
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~------------------------------------- 229 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR------------------------------------- 229 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE-------------------------------------
Confidence 3679999999999999999999999876444444455544311
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.+.-++...+.|+||||+.+. -|.+..+.++. +..++.++|.++ +|++++.......
T Consensus 230 -----------------~i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~-tle~~~~ADlil-~VvD~s~~~~~~~ 286 (351)
T TIGR03156 230 -----------------RLDLPDGGEVLLTDTVGFIRD----LPHELVAAFRA-TLEEVREADLLL-HVVDASDPDREEQ 286 (351)
T ss_pred -----------------EEEeCCCceEEEEecCccccc----CCHHHHHHHHH-HHHHHHhCCEEE-EEEECCCCchHHH
Confidence 122334468999999999652 14455555544 456788999554 4555543322221
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
...+.+.+...+.|+++|+||+|+.+.
T Consensus 287 ~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 287 IEAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 134556665557899999999999753
No 21
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=8.1e-14 Score=139.21 Aligned_cols=162 Identities=19% Similarity=0.228 Sum_probs=92.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-++.|++||.||||||||||+|++...-......+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 4678999999999999999999987532223334566663111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+..++...++++||||+...+..+ ..+.....+++++++++|+++ +++..-..++.
T Consensus 200 -----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~Vi-D~s~~~s~e~~ 255 (335)
T PRK12299 200 -----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLV-DIEAVDPVEDY 255 (335)
T ss_pred -----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEE-cCCCCCCHHHH
Confidence 222234579999999998744221 123344566788889555554 44431112222
Q ss_pred HHHHHHh---CC--CCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 197 MKLAREV---DP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 197 l~l~~~~---d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
..+..++ ++ ...+.++|+||+|+.+...................++.+++.+..+++.....+
T Consensus 256 ~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L 323 (335)
T PRK12299 256 KTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRAL 323 (335)
T ss_pred HHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 2233333 33 367999999999987544221111110111122345666666665555444443
No 22
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=141.92 Aligned_cols=165 Identities=16% Similarity=0.244 Sum_probs=106.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+..+|++||.||+|||||+|+|+|.+-.-++. .|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-----~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-----IA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-----CC-----------------------------------------
Confidence 56799999999999999999999987522221 11
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
| ...+.|...+. .+...+.+|||.|+.+...-. +..+..--.-+...|..+| ++++|.+|..++..+ .
T Consensus 211 ---G----TTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~~aI~~a~-vvllviDa~~~~~~q-D 278 (444)
T COG1160 211 ---G----TTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTLKAIERAD-VVLLVIDATEGISEQ-D 278 (444)
T ss_pred ---C----ccccceeeeEE-ECCeEEEEEECCCCCcccccc--cceEEEeehhhHhHHhhcC-EEEEEEECCCCchHH-H
Confidence 1 22333443333 345689999999998754321 1111100122455678888 677778888888444 5
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCc--ccccCCCeEEEEeCChhhhccCccHH
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGR--SYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
++++..+...|..+++|+||||+++..+...+....+ ..-..++|.++++.|+........+.
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~ 343 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLF 343 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHH
Confidence 5689999899999999999999998743322222111 12224688888888886544333333
No 23
>PRK11058 GTPase HflX; Provisional
Probab=99.52 E-value=1.6e-13 Score=141.40 Aligned_cols=126 Identities=19% Similarity=0.300 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.+|.|++||.+|||||||+|+|+|.++...+...+|+-|+.-
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~-------------------------------------- 237 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR-------------------------------------- 237 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE--------------------------------------
Confidence 579999999999999999999999876432322344444211
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
.+..++...+.|+||||+.+. .|.+..+.+.. +..++.++|.+|+ |++++.......
T Consensus 238 ----------------~i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~-VvDaS~~~~~e~l 295 (426)
T PRK11058 238 ----------------RIDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLH-VVDAADVRVQENI 295 (426)
T ss_pred ----------------EEEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEE-EEeCCCccHHHHH
Confidence 121223336789999999652 14445454544 4567888995555 455543321111
Q ss_pred --HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 --AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 --~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
...++.++...+.|+++|+||+|+.+.
T Consensus 296 ~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 296 EAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 124566666567899999999999753
No 24
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.52 E-value=2.1e-13 Score=126.03 Aligned_cols=126 Identities=22% Similarity=0.338 Sum_probs=80.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccc--cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
..+|.|+++|.+|+|||||+|+|+|.++.+...+. +|+.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 63 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-------------------------------------- 63 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE--------------------------------------
Confidence 37899999999999999999999997643322111 12111
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCe--EEEEEecCCccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNS--VILAISPANQDI 191 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~--iIL~V~~a~~d~ 191 (467)
..... ..++.||||||+.... .+....+.+..+...|++..+. ++++|++++...
T Consensus 64 -------------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 120 (196)
T PRK00454 64 -------------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL 120 (196)
T ss_pred -------------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCC
Confidence 11111 2589999999976422 1334455567778888876642 344455555433
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 192 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
. .....+.+.+...+.++++|+||+|+.+.+
T Consensus 121 ~-~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 121 K-ELDLQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred C-HHHHHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 2 222334445555678899999999998654
No 25
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=1.5e-13 Score=125.67 Aligned_cols=125 Identities=23% Similarity=0.325 Sum_probs=81.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCccccc--ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
...|.|+++|.+|+||||++|+|+|..+.+.-.. .+|+.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 57 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI-------------------------------------- 57 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE--------------------------------------
Confidence 4788999999999999999999999864322111 111111
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCC--eEEEEEecCCccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN--SVILAISPANQDI 191 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~--~iIL~V~~a~~d~ 191 (467)
....+ + .++.+|||||+..... +....+.+..+...|++..+ ..+++|++++.++
T Consensus 58 ----------------~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~ 114 (179)
T TIGR03598 58 ----------------NFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPL 114 (179)
T ss_pred ----------------EEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCC
Confidence 00111 1 3789999999865322 33334556677778877542 2455566666665
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 192 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
. ....++.+.+...+.|+++|+||+|+++.
T Consensus 115 ~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 115 K-ELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred C-HHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 4 33445566666678999999999999854
No 26
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.51 E-value=1.4e-13 Score=127.70 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=76.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccc--cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
+|++||.+|+||||++|+|+|...+.++. ..+|+.+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~--------------------------------------- 42 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKE--------------------------------------- 42 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCccccccee---------------------------------------
Confidence 69999999999999999999998765543 2334332100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
....+...+++|||||+.+... ....+...+...+......++ +||+|+++.. + +.+..
T Consensus 43 ----------------~~~~~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~-t~~d~ 101 (196)
T cd01852 43 ----------------SAVWDGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-F-TEEEE 101 (196)
T ss_pred ----------------eEEECCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-c-CHHHH
Confidence 0011345899999999987532 122333333333333445667 5666667765 4 33333
Q ss_pred HHHHHhCC-----CCCceEEEeccCcccCCC
Q 012279 198 KLAREVDP-----TGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 198 ~l~~~~d~-----~~~rti~VltK~D~~~~~ 223 (467)
..++.+.. ...++++|+|++|.+..+
T Consensus 102 ~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 102 QAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 33333322 136899999999988654
No 27
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.50 E-value=1.9e-13 Score=122.84 Aligned_cols=117 Identities=18% Similarity=0.283 Sum_probs=73.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
|.|+|+|.+|+|||||+|+|++..+.......+|+...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~------------------------------------------ 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG------------------------------------------ 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeec------------------------------------------
Confidence 78999999999999999999988763321112222110
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
...+....+...++++|||||... ...+...++..+|++++++ +++... ......
T Consensus 39 ----------~~~~~~~~~~~~~~~iiDtpG~~~-------------~~~~~~~~~~~~d~il~v~-d~~~~~-~~~~~~ 93 (168)
T cd01887 39 ----------AFEVPAEVLKIPGITFIDTPGHEA-------------FTNMRARGASLTDIAILVV-AADDGV-MPQTIE 93 (168)
T ss_pred ----------cEEEecccCCcceEEEEeCCCcHH-------------HHHHHHHHHhhcCEEEEEE-ECCCCc-cHHHHH
Confidence 000011112356899999999643 3455667788889665555 444322 233333
Q ss_pred HHHHhCCCCCceEEEeccCcccCC
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
....+...+.|.++|+||+|+.+.
T Consensus 94 ~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 94 AIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHcCCCEEEEEEceecccc
Confidence 333444467899999999998753
No 28
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.50 E-value=3.2e-12 Score=132.41 Aligned_cols=156 Identities=20% Similarity=0.240 Sum_probs=88.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
.+.++|+++|.+|+|||||+|+|+|.+. ..++..|
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~p---------------------------------------- 235 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIK---------------------------------------- 235 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC----------------------------------------
Confidence 4667999999999999999999999764 1222222
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHH-HHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI-ESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i-~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
|.+. +.+...+.. +...+.++||||+... .+..+.. -..+..|++++|.++++ .+++......
T Consensus 236 ----gtTr----d~~~~~i~~-~g~~v~l~DTaG~~~~------~~~ie~~gi~~~~~~~~~aD~il~V-~D~s~~~s~~ 299 (442)
T TIGR00450 236 ----GTTR----DVVEGDFEL-NGILIKLLDTAGIREH------ADFVERLGIEKSFKAIKQADLVIYV-LDASQPLTKD 299 (442)
T ss_pred ----CcEE----EEEEEEEEE-CCEEEEEeeCCCcccc------hhHHHHHHHHHHHHHHhhCCEEEEE-EECCCCCChh
Confidence 1000 001101111 2346789999999652 1222221 13467889999965554 5555433222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
.. +...+...+.|+++|+||+|+.+. +...+. ..+...++.++..+ .+++..++.+..
T Consensus 300 -~~-~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~----~~~~~~~~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 300 -DF-LIIDLNKSKKPFILVLNKIDLKIN--SLEFFV----SSKVLNSSNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred -HH-HHHHHhhCCCCEEEEEECccCCCc--chhhhh----hhcCCceEEEEEec-CCHHHHHHHHHH
Confidence 22 445555557899999999999654 221111 12223556666654 334444444433
No 29
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.49 E-value=8.2e-13 Score=123.18 Aligned_cols=128 Identities=23% Similarity=0.364 Sum_probs=78.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...|.|+|+|.+|||||||+|+|+|..+.+.+....|..|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-------------------------------------- 80 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-------------------------------------- 80 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee--------------------------------------
Confidence 467899999999999999999999987543333233322210
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
..+..++...++||||||+.+.. +....+.+.... .++.++|.+++++ +++.......
T Consensus 81 ----------------~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~-D~~~~~~~~~ 138 (204)
T cd01878 81 ----------------RRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVV-DASDPDYEEQ 138 (204)
T ss_pred ----------------EEEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEE-ECCCCChhhH
Confidence 01222233479999999986521 222333333333 4566788655554 4543322221
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...+.+.+...+.++++|+||+|+.+..
T Consensus 139 ~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 139 IETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 2345555555568999999999997654
No 30
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.49 E-value=2.3e-12 Score=134.18 Aligned_cols=153 Identities=23% Similarity=0.253 Sum_probs=91.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccc-ccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
+-++|+++|.+|+|||||+|+|+|.+..+.+ ...+|+-+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~---------------------------------------- 253 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDV---------------------------------------- 253 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccccc----------------------------------------
Confidence 4578999999999999999999998752111 11112211
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHH-HHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI-ESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i-~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
+...+. .+...+.++||||+.. +.+..+.. -..+..++.++|.++ +|++++.....
T Consensus 254 --------------~~~~i~-~~g~~i~l~DT~G~~~------~~~~ie~~gi~~~~~~~~~aD~il-~VvD~s~~~s~- 310 (449)
T PRK05291 254 --------------IEEHIN-LDGIPLRLIDTAGIRE------TDDEVEKIGIERSREAIEEADLVL-LVLDASEPLTE- 310 (449)
T ss_pred --------------EEEEEE-ECCeEEEEEeCCCCCC------CccHHHHHHHHHHHHHHHhCCEEE-EEecCCCCCCh-
Confidence 111111 1235789999999864 22222221 133567899999554 55555544322
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~ 262 (467)
+...+... ..+.|+++|+||+|+.+..... ......++.+++.++.+++.....+...
T Consensus 311 ~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 311 EDDEILEE--LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred hHHHHHHh--cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 23334333 3468999999999997543211 1112356778888777766655555443
No 31
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.48 E-value=2.4e-13 Score=115.10 Aligned_cols=115 Identities=22% Similarity=0.314 Sum_probs=73.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
+|+|+|.+|+|||||+|+|+|.+..+.+. ..+|+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~--------------------------------------- 40 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-G--------------------------------------- 40 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-E---------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-e---------------------------------------
Confidence 58999999999999999999976433332 345554421 0
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
....+...+.|+||||+..... .+........+.+.+...|.+|++ ++++.. ......+
T Consensus 41 ---------------~~~~~~~~~~~vDtpG~~~~~~----~~~~~~~~~~~~~~~~~~d~ii~v-v~~~~~-~~~~~~~ 99 (116)
T PF01926_consen 41 ---------------QFEYNNKKFILVDTPGINDGES----QDNDGKEIRKFLEQISKSDLIIYV-VDASNP-ITEDDKN 99 (116)
T ss_dssp ---------------EEEETTEEEEEEESSSCSSSSH----HHHHHHHHHHHHHHHCTESEEEEE-EETTSH-SHHHHHH
T ss_pred ---------------eeeeceeeEEEEeCCCCcccch----hhHHHHHHHHHHHHHHHCCEEEEE-EECCCC-CCHHHHH
Confidence 1111335678999999987321 111111233455556888865554 456553 2445556
Q ss_pred HHHHhCCCCCceEEEecc
Q 012279 199 LAREVDPTGERTFGVLTK 216 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK 216 (467)
+.+++. .+.++++|+||
T Consensus 100 ~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 100 ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHH-TTSEEEEEEES
T ss_pred HHHHHh-cCCCEEEEEcC
Confidence 777776 78999999998
No 32
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.48 E-value=5.3e-13 Score=140.14 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcc-cccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPR-GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~-~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..++|+++|.+|+|||||+|+|+|.++... ....+|+-+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~--------------------------------------- 250 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPV--------------------------------------- 250 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcc---------------------------------------
Confidence 568999999999999999999999875221 1112222221
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.. .+.+ +...+.||||||+.+.... ....+.+..+ +..+++++|++|+++ ++.... +.
T Consensus 251 -----------~~--~~~~---~~~~~~l~DTaG~~~~~~~---~~~~e~~~~~~~~~~i~~ad~vilV~-Da~~~~-s~ 309 (472)
T PRK03003 251 -----------DS--LIEL---GGKTWRFVDTAGLRRRVKQ---ASGHEYYASLRTHAAIEAAEVAVVLI-DASEPI-SE 309 (472)
T ss_pred -----------eE--EEEE---CCEEEEEEECCCccccccc---cchHHHHHHHHHHHHHhcCCEEEEEE-eCCCCC-CH
Confidence 00 1111 2346789999998653211 1112333333 345788999655554 555554 34
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+.++..+...+.++|+|+||+|+.+.
T Consensus 310 ~~~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 310 QDQRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4456677776678999999999999753
No 33
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=5.2e-13 Score=118.83 Aligned_cols=124 Identities=23% Similarity=0.339 Sum_probs=77.9
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccc-cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..+|+++|.+||||||++|+|+|.++.+.+... +|+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----------------------------------------- 41 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-----------------------------------------
Confidence 357999999999999999999998752222111 11100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+. .+.......+.++||||+..... ...+.+......++...|.+++++ ++.... .+..
T Consensus 42 -------------~~-~~~~~~~~~~~liDtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~i~~v~-d~~~~~-~~~~ 100 (168)
T cd04163 42 -------------IR-GIYTDDDAQIIFVDTPGIHKPKK-----KLGERMVKAAWSALKDVDLVLFVV-DASEPI-GEGD 100 (168)
T ss_pred -------------EE-EEEEcCCeEEEEEECCCCCcchH-----HHHHHHHHHHHHHHHhCCEEEEEE-ECCCcc-CchH
Confidence 00 12222345789999999876321 112334556777888999655554 444332 2333
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+.+.+...+.+.++|+||+|+....
T Consensus 101 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 101 EFILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred HHHHHHHHHhCCCEEEEEEchhccccH
Confidence 345555555578999999999998533
No 34
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.46 E-value=6.2e-13 Score=119.33 Aligned_cols=152 Identities=12% Similarity=0.151 Sum_probs=89.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|.+++|||||++++++.++.+.....++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 41 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFA----------------------------------------- 41 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE-----------------------------------------
Confidence 358999999999999999999998863322222111110
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-- 195 (467)
...+.+. .....+.++|+||... ...+...|++.++++|+++...+.. .-..
T Consensus 42 -----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 95 (165)
T cd01868 42 -----------TRSIQID-GKTIKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKKQ-TFENVE 95 (165)
T ss_pred -----------EEEEEEC-CEEEEEEEEeCCChHH-------------HHHHHHHHHCCCCEEEEEEECcCHH-HHHHHH
Confidence 0011111 1224688999999643 4567788899999777666544321 1122
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 196 -AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 196 -~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
.+..++...+.+.++++|.||+|+.+......+.........+.+|+.+++.++.+++...
T Consensus 96 ~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 96 RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 2233344445568999999999987543321111111111234567888887776654443
No 35
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=5.2e-13 Score=125.58 Aligned_cols=125 Identities=24% Similarity=0.298 Sum_probs=86.5
Q ss_pred cCCCeEE-EECCCCCcHHHHHHHhhCCCCCccc-ccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 36 EALPSVA-VVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 36 ~~lP~Iv-vvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
..-|..+ ++|..++||||++|||++.+.-|.+ .+.||+-++..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~----------------------------------- 80 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL----------------------------------- 80 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-----------------------------------
Confidence 3455554 9999999999999999987666655 45566655211
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
..+.+...|+|+||||+.+.. +-...++...++|+.+.| ++|++.++.... -
T Consensus 81 --------------------~~~~~~~~l~lwDtPG~gdg~------~~D~~~r~~~~d~l~~~D-LvL~l~~~~dra-L 132 (296)
T COG3596 81 --------------------RLSYDGENLVLWDTPGLGDGK------DKDAEHRQLYRDYLPKLD-LVLWLIKADDRA-L 132 (296)
T ss_pred --------------------HhhccccceEEecCCCcccch------hhhHHHHHHHHHHhhhcc-EEEEeccCCCcc-c
Confidence 112234689999999998743 222446888999999999 777887776422 2
Q ss_pred HHHHHHHHHhC-C-CCCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVD-P-TGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d-~-~~~rti~VltK~D~~~~~ 223 (467)
+....+.+.+- + .+.|+++|+|.+|...++
T Consensus 133 ~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 133 GTDEDFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred cCCHHHHHHHHHhccCceeEEEEehhhhhccc
Confidence 22333455443 2 238999999999998776
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.46 E-value=4.5e-13 Score=120.67 Aligned_cols=124 Identities=23% Similarity=0.302 Sum_probs=69.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
.|++||.+|||||||+|+|+|....+......|+.|. .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~------------------------------------------~ 39 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN------------------------------------------L 39 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc------------------------------------------c
Confidence 4899999999999999999987642211112232221 0
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDAMK 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~~~l~ 198 (467)
| . +.......+.|+||||+....... .. +.....+.+..+|++++++. +... -.......
T Consensus 40 ~----------~--~~~~~~~~~~l~DtpG~~~~~~~~--~~----~~~~~~~~~~~~d~vi~v~D-~~~~~~~~~~~~~ 100 (170)
T cd01898 40 G----------V--VRVDDGRSFVVADIPGLIEGASEG--KG----LGHRFLRHIERTRLLLHVID-LSGDDDPVEDYKT 100 (170)
T ss_pred e----------E--EEcCCCCeEEEEecCcccCccccc--CC----chHHHHHHHHhCCEEEEEEe-cCCCCCHHHHHHH
Confidence 0 0 111222489999999986532111 11 12223344567886665554 4432 11112122
Q ss_pred H---HHHhCC--CCCceEEEeccCcccCCCC
Q 012279 199 L---AREVDP--TGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 199 l---~~~~d~--~~~rti~VltK~D~~~~~~ 224 (467)
+ +....+ .+.+.++|+||+|+.++..
T Consensus 101 ~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 101 IRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred HHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 2 233322 3688999999999976544
No 37
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.46 E-value=6.6e-13 Score=119.84 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=89.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|||.+++|||||++++++..+-+......+....
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 42 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG---------------------------------------- 42 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE----------------------------------------
Confidence 3468999999999999999999998763332221111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
...+.+.+ ....+.++||||... +..+...|++++|++++++. ++..-.-.+.
T Consensus 43 ------------~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~il~v~d-~~~~~s~~~~ 95 (168)
T cd01866 43 ------------ARMITIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYD-ITRRETFNHL 95 (168)
T ss_pred ------------EEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEE-CCCHHHHHHH
Confidence 01111211 124688999999432 46678889999997666554 4432222233
Q ss_pred HHHHHHh---CCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCcc
Q 012279 197 MKLAREV---DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (467)
Q Consensus 197 l~l~~~~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~ 257 (467)
..+...+ ...+.++++|.||+|+.++.....+.........+..|+.+......+++..+.
T Consensus 96 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 96 TSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred HHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 3333333 224688999999999975432211111111222345577777777666554443
No 38
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.46 E-value=1.1e-12 Score=136.32 Aligned_cols=126 Identities=20% Similarity=0.304 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...+|+++|.+|+|||||+|+|+|.+....+. ..+|+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~--------------------------------------- 211 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSI--------------------------------------- 211 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcE---------------------------------------
Confidence 45789999999999999999999976432221 11222221
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
...+.. +...+++|||||+.+.... ....+......+..+++.+|.+|+ |+++.... +..
T Consensus 212 ---------------~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~il-V~D~~~~~-~~~ 271 (429)
T TIGR03594 212 ---------------DIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLL-VLDATEGI-TEQ 271 (429)
T ss_pred ---------------eEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEE-EEECCCCc-cHH
Confidence 111111 2347899999999764321 111211122334578899996555 45555555 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
..++++.+...+.+.++|+||+|+.+
T Consensus 272 ~~~~~~~~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 272 DLRIAGLILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred HHHHHHHHHHcCCcEEEEEECcccCC
Confidence 45677777667899999999999983
No 39
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.45 E-value=9.4e-13 Score=118.42 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999875
No 40
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.44 E-value=1.4e-12 Score=117.06 Aligned_cols=127 Identities=21% Similarity=0.293 Sum_probs=76.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccc-cccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T-r~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.++|+++|.+++|||||+|+|+|....+.+..+.| +...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSI---------------------------------------- 41 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCce----------------------------------------
Confidence 46899999999999999999999865332221111 1110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
...+. .+..++++|||||+...... ..........-...++..+|.++++ .+++.... ...
T Consensus 42 ------------~~~~~---~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v-~d~~~~~~-~~~ 102 (174)
T cd01895 42 ------------DVPFE---YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLV-IDATEGIT-EQD 102 (174)
T ss_pred ------------eeEEE---ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEE-EeCCCCcc-hhH
Confidence 00111 12346899999999764211 1111111112234567788855554 45555443 344
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+.+.+.+...+.+.++|+||+|+.+..
T Consensus 103 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 103 LRIAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHHHHHHhcCCCEEEEEeccccCCcc
Confidence 556666655678999999999998653
No 41
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.44 E-value=9.7e-13 Score=117.38 Aligned_cols=147 Identities=17% Similarity=0.215 Sum_probs=81.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+|+|||||+|++++.++.+......+.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 39 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLS------------------------------------------ 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEE------------------------------------------
Confidence 68999999999999999999988743222222211110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
-.+.+. .....+.++||||... ...+...+++.++++|+++. .+..-.-.....+
T Consensus 40 ----------~~~~~~-~~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~~~~ 94 (161)
T cd01861 40 ----------KTMYLE-DKTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYD-ITNRQSFDNTDKW 94 (161)
T ss_pred ----------EEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEE-CcCHHHHHHHHHH
Confidence 001111 1123688999999533 46678889999996665554 4322111222222
Q ss_pred HHH---hCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhc
Q 012279 200 ARE---VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (467)
Q Consensus 200 ~~~---~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~ 253 (467)
... ..+.+.++++|+||+|+........+............++.+.+....+++
T Consensus 95 ~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 151 (161)
T cd01861 95 IDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVK 151 (161)
T ss_pred HHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 222 222358999999999996443322221111111223445555555554443
No 42
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=9.3e-13 Score=136.68 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=89.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-++.|++||.+|||||||||+|++...-......+|+.|..-
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lG-------------------------------------- 199 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLG-------------------------------------- 199 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEE--------------------------------------
Confidence 457899999999999999999999763222223445555211
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-----cc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-----DI 191 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~-----d~ 191 (467)
+.......++|+||||+...+.. ...+.....+++++++.+|++| ++.. +.
T Consensus 200 -----------------vv~~~~~~f~laDtPGliegas~------g~gLg~~fLrhieradvLv~VV-D~s~~e~~rdp 255 (500)
T PRK12296 200 -----------------VVQAGDTRFTVADVPGLIPGASE------GKGLGLDFLRHIERCAVLVHVV-DCATLEPGRDP 255 (500)
T ss_pred -----------------EEEECCeEEEEEECCCCccccch------hhHHHHHHHHHHHhcCEEEEEE-CCcccccccCc
Confidence 11112247899999999864321 1122233456778888655554 4432 11
Q ss_pred c-cHHHH-HHHHHhC-----------CCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 192 A-TSDAM-KLAREVD-----------PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 192 ~-~~~~l-~l~~~~d-----------~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
. .-+.+ ..+..+. ..+.|.|+|+||+|+.+... ..+.+..........++.+++.+..+++.+...
T Consensus 256 ~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~ 334 (500)
T PRK12296 256 LSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFA 334 (500)
T ss_pred hhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 1 11111 1111121 23689999999999875432 222221111111234566777666666655544
Q ss_pred HHHH
Q 012279 259 IVAR 262 (467)
Q Consensus 259 ~~~~ 262 (467)
+...
T Consensus 335 L~el 338 (500)
T PRK12296 335 LAEL 338 (500)
T ss_pred HHHH
Confidence 4433
No 43
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.43 E-value=1.6e-12 Score=120.12 Aligned_cols=114 Identities=12% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---HHHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---SDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 216 (467)
..+.|+||||..+ ...+...|++.+|++|+++. ++..-+- ...+..+....+.+.|+++|+||
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D-~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK 115 (191)
T cd04112 50 VKLQIWDTAGQER-------------FRSVTHAYYRDAHALLLLYD-ITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNK 115 (191)
T ss_pred EEEEEEeCCCcHH-------------HHHhhHHHccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEc
Confidence 4788999999533 45567788999997666554 4332111 11233444555567899999999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHHHHHh
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKERE 267 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~ 267 (467)
+|+....................+|+.+.+.++.+++.....+.....+..
T Consensus 116 ~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 116 ADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred ccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999743321111111011223357888888888887777777766655554
No 44
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.43 E-value=8.6e-13 Score=131.72 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-++.|++||.+|||||||||+|++..........+|+.|+.-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 4578999999999999999999987532223334555553111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c--cc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I--AT 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~--~~ 193 (467)
+...+...++|+||||+...+..+ ..+.....+++++++.+++++ ++... . ..
T Consensus 199 -----------------v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~Vv-D~s~~~~~~~~ 254 (329)
T TIGR02729 199 -----------------VRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLI-DISPLDGRDPI 254 (329)
T ss_pred -----------------EEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEE-cCccccccCHH
Confidence 111223578999999998643211 113344556677888555554 44431 1 11
Q ss_pred HHHHHHHHH---hCC--CCCceEEEeccCcccCC
Q 012279 194 SDAMKLARE---VDP--TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 194 ~~~l~l~~~---~d~--~~~rti~VltK~D~~~~ 222 (467)
++...+.++ +.+ ...+.++|+||+|+.+.
T Consensus 255 e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 255 EDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 121222222 222 36899999999999765
No 45
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.42 E-value=1.8e-12 Score=134.89 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=96.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcc-cccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPR-GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~-~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.|++||.+|+|||||+|+|+|...-.. ....+||...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~------------------------------------------ 38 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRK------------------------------------------ 38 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCce------------------------------------------
Confidence 489999999999999999999764111 1122333221
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
...+.. +...+.||||||+... ...+.+.+...+..+++.+|. +++|+++.... +.....
T Consensus 39 ------------~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~-vl~vvD~~~~~-~~~d~~ 98 (429)
T TIGR03594 39 ------------YGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADV-ILFVVDGREGL-TPEDEE 98 (429)
T ss_pred ------------EEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCE-EEEEEeCCCCC-CHHHHH
Confidence 111111 2346899999998642 234556678889999999995 55555666554 333445
Q ss_pred HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCC-CeEEEEeCChhhhccCccHH
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l-g~~~V~~~s~~~~~~~~~~~ 259 (467)
+++.+...+.++++|+||+|+.+......+. +.++. .++.+++..+.+++...+..
T Consensus 99 i~~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 99 IAKWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred HHHHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 6666666689999999999988654433222 23333 35667666665554444433
No 46
>PRK04213 GTP-binding protein; Provisional
Probab=99.42 E-value=2.1e-12 Score=120.05 Aligned_cols=125 Identities=22% Similarity=0.362 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..+.|+++|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 467999999999999999999999874 32211 112211
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-CCC--eEEEEEecCCcccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPN--SVILAISPANQDIA 192 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~--~iIL~V~~a~~d~~ 192 (467)
..+.. .++++|||||+...... ++...+.++.+...|+. ..+ .+++.|+++.....
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 11111 16899999997543211 22334556777777765 332 24445555543211
Q ss_pred ----------cHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 193 ----------TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 193 ----------~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
......+...+...+.|.++|+||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence 1112233444444578999999999987543
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.42 E-value=1.8e-12 Score=116.63 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=86.3
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccc-cccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T-r~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
.+|+++|++++|||||++++++..+.+....+.+ +..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~------------------------------------------ 39 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK------------------------------------------ 39 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE------------------------------------------
Confidence 3799999999999999999999876322111110 000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-- 195 (467)
...+.. ......+.++||||..+ ...+...|+++++++++++...+.. +-..
T Consensus 40 -----------~~~~~~-~~~~~~~~l~Dt~g~~~-------------~~~~~~~~~~~~~~~l~v~d~~~~~-s~~~~~ 93 (165)
T cd01865 40 -----------VKTVFR-NDKRVKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEE-SFNAVQ 93 (165)
T ss_pred -----------EEEEEE-CCEEEEEEEEECCChHH-------------HHHHHHHHccCCcEEEEEEECCCHH-HHHHHH
Confidence 000111 11224688999999643 3566788899999776665543321 1111
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 196 -AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 196 -~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
.+.......+...++++|.||+|+.+......+........++..|+.+.+.++.+++...+.
T Consensus 94 ~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 94 DWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred HHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 222333334456789999999999765432111111011123345677776666555444333
No 48
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.42 E-value=1.6e-12 Score=116.10 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=42.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--HHHHHHHHHhCCCCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK 216 (467)
...+.+|||||..+ +......++..+|++++++ +++.++.. .+.+.+++... ..++++|+||
T Consensus 50 ~~~~~~~DtpG~~~-------------~~~~~~~~~~~ad~ii~V~-d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHEK-------------FIKNMLAGAGGIDLVLLVV-AADEGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChHH-------------HHHHHHhhhhcCCEEEEEE-ECCCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 45899999999643 3344567788899655554 55443222 22233333321 2489999999
Q ss_pred CcccCC
Q 012279 217 LDLMDK 222 (467)
Q Consensus 217 ~D~~~~ 222 (467)
+|+...
T Consensus 114 ~Dl~~~ 119 (164)
T cd04171 114 ADLVDE 119 (164)
T ss_pred ccccCH
Confidence 999764
No 49
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=3.2e-12 Score=134.31 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=97.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
...|.|++||.+|+|||||+|+|+|..+...+. ..+|+-
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d---------------------------------------- 75 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRD---------------------------------------- 75 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEe----------------------------------------
Confidence 357999999999999999999999976411111 111211
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.+...+. .....+.||||||+... ...+.+.+...+..|++.+|.+|+ |+++......
T Consensus 76 --------------~~~~~~~-~~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~il~-VvD~~~~~s~- 133 (472)
T PRK03003 76 --------------RVSYDAE-WNGRRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTADAVLF-VVDATVGATA- 133 (472)
T ss_pred --------------eEEEEEE-ECCcEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCCEEEE-EEECCCCCCH-
Confidence 1111111 12346899999998632 223556677888899999995555 4555544322
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCC-eEEEEeCChhhhccCccHHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~V~~~s~~~~~~~~~~~~~ 261 (467)
....++..+...+.|+++|+||+|+.....+..+. +.++++ .+.+++..+.+++...+.+..
T Consensus 134 ~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 134 TDEAVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 23445666666789999999999986533222222 122222 346777776666655554443
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.42 E-value=2.2e-12 Score=116.31 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=87.4
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+++|++++|||||++++++.+|-+. ..+......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~----------------------------------------- 40 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDF----------------------------------------- 40 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceE-----------------------------------------
Confidence 46899999999999999999999886221 111110000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH-
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA- 196 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~- 196 (467)
....+.+ ......+.++||||... ...+...+++++|++|+++.. +....-+..
T Consensus 41 ----------~~~~~~~-~~~~~~l~l~D~~g~~~-------------~~~~~~~~~~~ad~~i~v~d~-~~~~s~~~~~ 95 (167)
T cd01867 41 ----------KIRTIEL-DGKKIKLQIWDTAGQER-------------FRTITTAYYRGAMGIILVYDI-TDEKSFENIR 95 (167)
T ss_pred ----------EEEEEEE-CCEEEEEEEEeCCchHH-------------HHHHHHHHhCCCCEEEEEEEC-cCHHHHHhHH
Confidence 0001111 11235788999999543 355677889999977666543 322111122
Q ss_pred --HHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 197 --MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 197 --l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
+.......+.+.++++|.||+|+.+......+.........+.+|+.++.....+++..+
T Consensus 96 ~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 96 NWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAF 157 (167)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 222333344578999999999998643222111111122334567777777665554433
No 51
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.41 E-value=3e-12 Score=122.78 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=80.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...+|+|+|..|+|||||+|+|+|....+.+.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 667999999999999999999999876554322 2333332111
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCccccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIAT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~ 193 (467)
...+...+++|||||+...... ....+.+.+.+.+|++ ..+ +||+|...+..-..
T Consensus 74 -------------------~~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~id-vIL~V~rlD~~r~~ 130 (249)
T cd01853 74 -------------------GTVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPD-VVLYVDRLDMYRRD 130 (249)
T ss_pred -------------------EEECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCC-EEEEEEcCCCCCCC
Confidence 0123467899999999874321 1233445566778886 345 56666544432112
Q ss_pred HHHHHHHHHhCC-C----CCceEEEeccCcccCCCC
Q 012279 194 SDAMKLAREVDP-T----GERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 194 ~~~l~l~~~~d~-~----~~rti~VltK~D~~~~~~ 224 (467)
.....+++.+.. . ..++++|+||+|...+..
T Consensus 131 ~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 131 YLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 222333333322 1 268999999999986654
No 52
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.41 E-value=3e-12 Score=115.05 Aligned_cols=152 Identities=13% Similarity=0.191 Sum_probs=86.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|.+|+|||||++++++..+.+....+.+. .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~-~------------------------------------------- 38 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-D------------------------------------------- 38 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce-e-------------------------------------------
Confidence 57999999999999999999988762211111000 0
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
.....+.+. .....+.++||||..+ ...+...|+++++++|+++...+.+ +-.....
T Consensus 39 --------~~~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~l~~ 95 (166)
T cd01869 39 --------FKIRTIELD-GKTIKLQIWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQ 95 (166)
T ss_pred --------EEEEEEEEC-CEEEEEEEEECCCcHh-------------HHHHHHHHhCcCCEEEEEEECcCHH-HHHhHHH
Confidence 000011111 1224678999999543 4567788899999777776544321 1111222
Q ss_pred H---HHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCcc
Q 012279 199 L---AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (467)
Q Consensus 199 l---~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~ 257 (467)
+ .+.....+.+.++|.||+|+........+.........+..|+.+.+..+.+++..+.
T Consensus 96 ~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 157 (166)
T cd01869 96 WLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFM 157 (166)
T ss_pred HHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHH
Confidence 2 2333334679999999999865432211111111222345677777777666554433
No 53
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=2.3e-12 Score=134.35 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=81.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
+.++|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~--------------------------------------- 212 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI--------------------------------------- 212 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE---------------------------------------
Confidence 567999999999999999999999875333221 1222221
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
...+. .+...+.+|||||+.+..... ...+.....-+.++++.+|.+ ++|+++..+.. ..
T Consensus 213 ---------------~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~-ilViD~~~~~~-~~ 272 (435)
T PRK00093 213 ---------------DTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVV-LLVIDATEGIT-EQ 272 (435)
T ss_pred ---------------EEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEE-EEEEeCCCCCC-HH
Confidence 11111 234578999999997633211 111111112345678899954 45556666654 44
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
...+++.+...+.++++|+||+|+.+.
T Consensus 273 ~~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 273 DLRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHHHHcCCcEEEEEECccCCCH
Confidence 456777777778999999999999843
No 54
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.40 E-value=2.4e-12 Score=115.05 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=86.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||+++|++..+-+......+....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFG------------------------------------------- 38 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE-------------------------------------------
Confidence 6899999999999999999988763322221111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~--- 196 (467)
...+.+. .....+.|+|+||... ...+...+++.++++|+++...+. ......
T Consensus 39 ---------~~~~~~~-~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~ 94 (161)
T cd04113 39 ---------SKIIRVG-GKRVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITNR-TSFEALPTW 94 (161)
T ss_pred ---------EEEEEEC-CEEEEEEEEECcchHH-------------HHHhHHHHhcCCCEEEEEEECCCH-HHHHHHHHH
Confidence 0011111 2235788999999643 456778889999977776654432 112222
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
+...+.....+.++++|.||+|+........+............|+.+.+.+..+++..
T Consensus 95 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 95 LSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEA 153 (161)
T ss_pred HHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 22233344457899999999999764332111111111222355777777666555443
No 55
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.40 E-value=2.3e-12 Score=115.09 Aligned_cols=149 Identities=16% Similarity=0.202 Sum_probs=83.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||++++++..+-+......+....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFK------------------------------------------- 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE-------------------------------------------
Confidence 6899999999999999999998762221111111100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
...+.+. .....+.++|+||... ...+...+++++|++|+++...+. .+.+...++
T Consensus 39 ---------~~~~~~~-~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~ 94 (164)
T smart00175 39 ---------TKTIEVD-GKRVKLQIWDTAGQER-------------FRSITSSYYRGAVGALLVYDITNR-ESFENLKNW 94 (164)
T ss_pred ---------EEEEEEC-CEEEEEEEEECCChHH-------------HHHHHHHHhCCCCEEEEEEECCCH-HHHHHHHHH
Confidence 0011111 1124688999999533 456778889999977777654432 222222223
Q ss_pred HHHh---CCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 200 AREV---DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 200 ~~~~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
...+ ...+.|+++|.||+|+........+.........+..|+.+......+++..
T Consensus 95 l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 95 LKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEA 153 (164)
T ss_pred HHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 3322 2247899999999998753321111111111122344666666555444433
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=3.9e-12 Score=132.57 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=93.3
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCccc-ccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
|.|++||.+|+|||||+|+|+|...-..+ ...+|+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~----------------------------------------- 40 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRI----------------------------------------- 40 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccce-----------------------------------------
Confidence 78999999999999999999998741111 111222110
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
.-.+.. +...+.+|||||+... ..+....+...+..++..+|.+|++ +++...... ...
T Consensus 41 -------------~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~v-vd~~~~~~~-~~~ 99 (435)
T PRK00093 41 -------------YGEAEW-LGREFILIDTGGIEPD-----DDGFEKQIREQAELAIEEADVILFV-VDGRAGLTP-ADE 99 (435)
T ss_pred -------------EEEEEE-CCcEEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEE-EECCCCCCH-HHH
Confidence 001111 2367899999999862 1235556777788899999965554 555544322 233
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCC-eEEEEeCChhhhccCccH
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDM 258 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~V~~~s~~~~~~~~~~ 258 (467)
.+++.+...+.++++|+||+|..+......+. +.++.+ ++.+++..+.+++...+.
T Consensus 100 ~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 100 EIAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHH
Confidence 34555555589999999999976533222222 223333 566777666665544433
No 57
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.40 E-value=2.8e-12 Score=131.49 Aligned_cols=123 Identities=24% Similarity=0.286 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-++.|++||.+|||||||||+|++...--.....+|+.|..-.
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~------------------------------------- 199 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV------------------------------------- 199 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE-------------------------------------
Confidence 3468999999999999999999987621112234455552110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc---cccc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIAT 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~---d~~~ 193 (467)
+..++...++|+||||+...+..+ ..+.....+++++++.+|+++..++. +. .
T Consensus 200 -----------------v~~~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~dp-~ 255 (424)
T PRK12297 200 -----------------VETDDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRDP-I 255 (424)
T ss_pred -----------------EEEeCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCCh-H
Confidence 112224579999999998643211 11223344556778866665554332 21 1
Q ss_pred HHHHHHHHH---hCC--CCCceEEEeccCccc
Q 012279 194 SDAMKLARE---VDP--TGERTFGVLTKLDLM 220 (467)
Q Consensus 194 ~~~l~l~~~---~d~--~~~rti~VltK~D~~ 220 (467)
.+...+..+ ..+ .+.+.++|+||+|+.
T Consensus 256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 256 EDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 222223333 333 368999999999974
No 58
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.40 E-value=1.8e-12 Score=114.36 Aligned_cols=114 Identities=22% Similarity=0.275 Sum_probs=70.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+++||||++|+|++..+.+......+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~-------------------------------------------- 37 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDF-------------------------------------------- 37 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeee--------------------------------------------
Confidence 699999999999999999999886332111111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
....+.+. ....++.++|+||... ...+...++++.|++|+++...+.+ .......+
T Consensus 38 --------~~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~ 94 (159)
T cd00154 38 --------KSKTIEID-GKTVKLQIWDTAGQER-------------FRSITPSYYRGAHGAILVYDITNRE-SFENLDKW 94 (159)
T ss_pred --------EEEEEEEC-CEEEEEEEEecCChHH-------------HHHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHH
Confidence 01111111 1235788999999743 4567888899999766665543321 12222223
Q ss_pred HHH---hCCCCCceEEEeccCccc
Q 012279 200 ARE---VDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 200 ~~~---~d~~~~rti~VltK~D~~ 220 (467)
... ....+.++++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEccccc
Confidence 322 222468999999999997
No 59
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.40 E-value=3.8e-12 Score=114.49 Aligned_cols=150 Identities=12% Similarity=0.186 Sum_probs=86.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
-+|+++|++++|||||++++.+..+.+....+ +....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t-~~~~~------------------------------------------ 39 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEF------------------------------------------ 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcc-cceeE------------------------------------------
Confidence 47999999999999999999998763322111 11000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
. ...+.+. .....+.++||||... ...+...|+++++++|+++...+.. +-+....
T Consensus 40 -------~--~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~ 95 (166)
T cd04122 40 -------G--TRIIEVN-GQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRS-TYNHLSS 95 (166)
T ss_pred -------E--EEEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHH-HHHHHHH
Confidence 0 0011111 1224688999999543 4667888999999877776654421 1111222
Q ss_pred H---HHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 199 L---AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 199 l---~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
+ .+.......++++|.||+|+........+.........+..|+.+.+.+..+++..
T Consensus 96 ~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 96 WLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred HHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 2 33333446789999999999754432111111111122346777777766665443
No 60
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.39 E-value=2.7e-12 Score=114.67 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=82.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|++|+|||||++++++..+ +....+.++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~------------------------------------------ 38 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSY------------------------------------------ 38 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhE------------------------------------------
Confidence 4799999999999999999998765 221111111000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
. -.+.+ ......+.|+||||..+ ...+...|+++++++++++...+.. +-.....
T Consensus 39 --------~--~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~ 93 (163)
T cd04136 39 --------R--KQIEV-DGQQCMLEILDTAGTEQ-------------FTAMRDLYIKNGQGFVLVYSITSQS-SFNDLQD 93 (163)
T ss_pred --------E--EEEEE-CCEEEEEEEEECCCccc-------------cchHHHHHhhcCCEEEEEEECCCHH-HHHHHHH
Confidence 0 00111 12234678999999754 3556778899999777766543321 1112222
Q ss_pred HHHHh----CCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhcc
Q 012279 199 LAREV----DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (467)
Q Consensus 199 l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~ 254 (467)
+...+ ...+.|+++|.||+|+.+......+.........+..|+.+.+++..+++.
T Consensus 94 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 94 LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDE 153 (163)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 22222 234689999999999875432211111101112224566666666555443
No 61
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9.2e-12 Score=125.23 Aligned_cols=130 Identities=28% Similarity=0.345 Sum_probs=86.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..-++||++|.||+|||||||+|+..+. .+++..|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~---------------------------------------- 300 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP---------------------------------------- 300 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC----------------------------------------
Confidence 3568999999999999999999999887 6666655
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
| ...+.|...+. +++..+.|+||.|+.+.. ...++..=-+-+++-++.+| +|++|++++... ++.
T Consensus 301 ----G----TTRDaiea~v~-~~G~~v~L~DTAGiRe~~----~~~iE~~gI~rA~k~~~~ad-vi~~vvda~~~~-t~s 365 (531)
T KOG1191|consen 301 ----G----TTRDAIEAQVT-VNGVPVRLSDTAGIREES----NDGIEALGIERARKRIERAD-VILLVVDAEESD-TES 365 (531)
T ss_pred ----C----cchhhheeEee-cCCeEEEEEecccccccc----CChhHHHhHHHHHHHHhhcC-EEEEEecccccc-ccc
Confidence 2 22334444343 677899999999998821 11122222245777889999 666666774433 222
Q ss_pred HHHHHHHhCC------------CCCceEEEeccCcccCCCCc
Q 012279 196 AMKLAREVDP------------TGERTFGVLTKLDLMDKGTN 225 (467)
Q Consensus 196 ~l~l~~~~d~------------~~~rti~VltK~D~~~~~~~ 225 (467)
.+.+++.+.. ...|.+.|.||.|+..+...
T Consensus 366 d~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~ 407 (531)
T KOG1191|consen 366 DLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE 407 (531)
T ss_pred chHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc
Confidence 3333333322 23788999999999877443
No 62
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-10 Score=120.38 Aligned_cols=185 Identities=19% Similarity=0.253 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCch
Q 012279 10 LVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE 89 (467)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~ 89 (467)
..++|..+...+... -..|++.|+.|+||||++||++-.++||.|.|.||.|-.+|.=. ++...
T Consensus 94 ~~~~l~~i~~~l~r~-------------~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Vega---dG~e~ 157 (749)
T KOG0448|consen 94 YEDKLDAIDEVLARR-------------HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGA---DGAEA 157 (749)
T ss_pred HHHHHHHHHHHHhhc-------------ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeeccc---CCcce
Confidence 345555555555544 34899999999999999999999999999999999998766532 22222
Q ss_pred hHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCC------CCcEEEeCCCCCccccCCCCccHH
Q 012279 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNV------VNLTLIDLPGLTKVAVEGQPDTIV 163 (467)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~------~~ltlVDtPGi~~~~~~~q~~~~~ 163 (467)
+...-+. ..-.|...+...+....... . ....--+.|+.|+. .++.++|.||+.-.+.
T Consensus 158 vl~~~~s--~ek~d~~ti~~~~haL~~~~-----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se-------- 221 (749)
T KOG0448|consen 158 VLATEGS--EEKIDMKTINQLAHALKPDK-----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE-------- 221 (749)
T ss_pred eeccCCC--cccccHHHHhHHHHhcCccc-----c-cCcceEEEEEecCccchhhhccceeccCCCCCCchh--------
Confidence 2111111 11122222322222111111 0 11223355666655 4899999999986431
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHh
Q 012279 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVL 230 (467)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l 230 (467)
....+.++..++| ++++|+.|.+.+ +..+.++...+......++++.||+|....+.++.+.+
T Consensus 222 --~tswid~~cldaD-VfVlV~NaEntl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 222 --LTSWIDSFCLDAD-VFVLVVNAENTL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred --hhHHHHHHhhcCC-eEEEEecCccHh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHH
Confidence 3566888889999 555556666655 55567778877776677888889999987766655443
No 63
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.39 E-value=1.7e-12 Score=114.81 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
..+.++||||+..... .....+.+.+..++...|.+++++ ++...... ....+.+.+...+.++++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~-d~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVV-DGREGLTP-ADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEE-eccccCCc-cHHHHHHHHHhcCCCEEEEEECccc
Confidence 5789999999976321 233445556677888899655554 44433322 2233445555557999999999999
Q ss_pred cCCC
Q 012279 220 MDKG 223 (467)
Q Consensus 220 ~~~~ 223 (467)
.+..
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 8654
No 64
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.39 E-value=3.8e-12 Score=113.80 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=57.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH----HHHHhCCCCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK----LAREVDPTGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 215 (467)
..+.++||||..+ ...+...|++.+|++++++...+.. .-..... +.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQEE-------------FSAMREQYMRTGEGFLLVFSVTDRG-SFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 4688999999654 3567788899999777776543321 1111111 22223445789999999
Q ss_pred cCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhcc
Q 012279 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (467)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~ 254 (467)
|+|+.+................+..|+.+++.++.++++
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 116 KADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDK 154 (164)
T ss_pred CccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHH
Confidence 999875432111111111112234566666666555443
No 65
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.38 E-value=4.8e-12 Score=113.29 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=83.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||+|++++..+.+.....++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~----------------------------------------------- 34 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG----------------------------------------------- 34 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-----------------------------------------------
Confidence 699999999999999999999886321111110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~--- 196 (467)
+......+.+. .....+.++||||... ...+...|++.++++|+++...+.. +-+..
T Consensus 35 -----~~~~~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~D~~~~~-s~~~~~~~ 94 (168)
T cd04119 35 -----IDYGVKKVSVR-NKEVRVNFFDLSGHPE-------------YLEVRNEFYKDTQGVLLVYDVTDRQ-SFEALDSW 94 (168)
T ss_pred -----eeEEEEEEEEC-CeEEEEEEEECCccHH-------------HHHHHHHHhccCCEEEEEEECCCHH-HHHhHHHH
Confidence 00000111121 2235789999999743 3456778889999777766543321 11111
Q ss_pred HHHHHH-hCC----CCCceEEEeccCcccCCCCc-HHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 197 MKLARE-VDP----TGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 197 l~l~~~-~d~----~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
+..+.. ..+ .+.|+++|.||+|+.++... ..+... .....+..|+.+.+.+..+++...
T Consensus 95 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 95 LKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred HHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeEEEEECCCCCCHHHHH
Confidence 222222 222 46889999999999743221 111100 111222456777776665554433
No 66
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.38 E-value=3.5e-12 Score=114.98 Aligned_cols=152 Identities=14% Similarity=0.230 Sum_probs=84.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|.+++|||||+|+|++..+-+.....++....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~------------------------------------------- 38 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEE-------------------------------------------
Confidence 6999999999999999999998763222111111100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH-
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~- 198 (467)
...+.+. .....+.++|+||... ...+...|+++++++|+++...+.. .-.....
T Consensus 39 ---------~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~ 94 (172)
T cd01862 39 ---------TKEVTVD-DKLVTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVTNPK-SFESLDSW 94 (172)
T ss_pred ---------EEEEEEC-CEEEEEEEEeCCChHH-------------HHhHHHHHhcCCCEEEEEEECCCHH-HHHHHHHH
Confidence 0001111 1224678999999643 3566788999999777766543321 1111111
Q ss_pred ---HHHHhC---CCCCceEEEeccCcccCCCCcHHHHhcCccccc-CCCeEEEEeCChhhhccCccH
Q 012279 199 ---LAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL-QHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 199 ---l~~~~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~lg~~~V~~~s~~~~~~~~~~ 258 (467)
+..... +.+.|+++|+||+|+..+.....+.+....... ...++.+.+..+.+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 161 (172)
T cd01862 95 RDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFET 161 (172)
T ss_pred HHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHH
Confidence 223333 337899999999999853321111111111111 145677777766655444433
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.38 E-value=2.8e-12 Score=114.86 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=83.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++|+|||||+|++++..+.. ...+++....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~------------------------------------------- 37 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSY------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhE-------------------------------------------
Confidence 69999999999999999999887522 1111111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH-
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~- 198 (467)
...+. .......+.++||||..+ ...+...|++..+++|+++...+. -.-.....
T Consensus 38 ---------~~~~~-~~~~~~~l~i~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~ 93 (164)
T smart00173 38 ---------RKQIE-IDGEVCLLDILDTAGQEE-------------FSAMRDQYMRTGEGFLLVYSITDR-QSFEEIKKF 93 (164)
T ss_pred ---------EEEEE-ECCEEEEEEEEECCCccc-------------chHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHH
Confidence 00011 112235778999999754 345677888899976666543321 11111111
Q ss_pred ---HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 199 ---LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 199 ---l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
+.+.......|+++|.||+|+.+......+............|+.+.+.+..+++...
T Consensus 94 ~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 94 REQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence 2222233467999999999987543211111111111223457777777665554433
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.38 E-value=3.5e-12 Score=113.87 Aligned_cols=100 Identities=21% Similarity=0.301 Sum_probs=56.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhC--CCCCceEEEeccC
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVD--PTGERTFGVLTKL 217 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~ 217 (467)
..+.|+||||... ...+...|++.++++++++...+.+ .-.....+...+. ..+.|+++|.||+
T Consensus 51 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACILVFSTTDRE-SFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHH-------------HHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 5789999999532 4667788999999766665433321 1111122222222 2368999999999
Q ss_pred cccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhc
Q 012279 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (467)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~ 253 (467)
|+........+........++..++.+....+.+++
T Consensus 117 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 117 DLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVT 152 (162)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 997643321111111112233456666666554443
No 69
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=4.5e-12 Score=139.36 Aligned_cols=126 Identities=25% Similarity=0.299 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCC-cccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~l-P~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..++|+++|.+|+|||||+|+|+|.++. +.....+|+-+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~-------------------------------------- 490 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD-------------------------------------- 490 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--------------------------------------
Confidence 4689999999999999999999998752 2222222332210
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
..+.+ +..++.||||||+.+.... ....+....+ +..+++.+|.++ +|++++.....
T Consensus 491 --------------~~~~~---~~~~~~liDTaG~~~~~~~---~~~~e~~~~~r~~~~i~~advvi-lViDat~~~s~- 548 (712)
T PRK09518 491 --------------EIVEI---DGEDWLFIDTAGIKRRQHK---LTGAEYYSSLRTQAAIERSELAL-FLFDASQPISE- 548 (712)
T ss_pred --------------eEEEE---CCCEEEEEECCCcccCccc---chhHHHHHHHHHHHHhhcCCEEE-EEEECCCCCCH-
Confidence 01111 3356889999998753211 1111222222 456788999555 45566655533
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+.++..+...+.++++|+||+|+.+.
T Consensus 549 ~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 549 QDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 3455666666678999999999999864
No 70
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.38 E-value=1.1e-11 Score=109.59 Aligned_cols=120 Identities=26% Similarity=0.344 Sum_probs=72.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccc-cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
+|+++|++++|||||+|+|+|..+...+..+ +|+.+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 39 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV------------------------------------------- 39 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-------------------------------------------
Confidence 6999999999999999999998742222111 11111
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
....+ ......++++||||+..... ............++.+++.+++ |.++.... .....+
T Consensus 40 -----------~~~~~-~~~~~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~-v~d~~~~~-~~~~~~ 100 (157)
T cd04164 40 -----------IEESI-DIGGIPVRLIDTAGIRETED-----EIEKIGIERAREAIEEADLVLF-VIDASRGL-DEEDLE 100 (157)
T ss_pred -----------EEEEE-EeCCEEEEEEECCCcCCCcc-----hHHHHHHHHHHHHHhhCCEEEE-EEECCCCC-CHHHHH
Confidence 01111 12245789999999876321 1111122345566778885554 55555433 333333
Q ss_pred HHHHhCCCCCceEEEeccCcccCCC
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+... ..+.++++|+||+|+.+..
T Consensus 101 ~~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 101 ILEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHHh--hcCCCEEEEEEchhcCCcc
Confidence 4443 4478999999999998654
No 71
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.37 E-value=4.7e-12 Score=112.96 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH---HHHHHHH---hCCCCCceEE
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---AMKLARE---VDPTGERTFG 212 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~---~d~~~~rti~ 212 (467)
...+.++||||..+ ...+...|++++|++|+++.. +....-.. .+..+.. +...+.|+++
T Consensus 44 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 109 (162)
T cd04157 44 NLSFTAFDMSGQGK-------------YRGLWEHYYKNIQGIIFVIDS-SDRLRLVVVKDELELLLNHPDIKHRRVPILF 109 (162)
T ss_pred CEEEEEEECCCCHh-------------hHHHHHHHHccCCEEEEEEeC-CcHHHHHHHHHHHHHHHcCcccccCCCCEEE
Confidence 45789999999754 456778899999977766554 32211111 1221111 1224689999
Q ss_pred EeccCcccCC
Q 012279 213 VLTKLDLMDK 222 (467)
Q Consensus 213 VltK~D~~~~ 222 (467)
|+||+|+.+.
T Consensus 110 v~NK~Dl~~~ 119 (162)
T cd04157 110 FANKMDLPDA 119 (162)
T ss_pred EEeCccccCC
Confidence 9999998754
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.37 E-value=7e-12 Score=116.54 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=85.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++|+|||||++++++.+| +....+.+.....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~------------------------------------------ 38 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLY------------------------------------------ 38 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccc------------------------------------------
Confidence 689999999999999999999876 3322222111100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
. ..+.+ ......+.|+||||...... ...+........+++.+|++|+++...+.+ +-.....+
T Consensus 39 -------~--~~i~~-~~~~~~l~i~Dt~G~~~~~~-----~~~~e~~~~~~~~~~~ad~iilv~D~~~~~-S~~~~~~~ 102 (198)
T cd04142 39 -------R--PAVVL-SGRVYDLHILDVPNMQRYPG-----TAGQEWMDPRFRGLRNSRAFILVYDICSPD-SFHYVKLL 102 (198)
T ss_pred -------e--eEEEE-CCEEEEEEEEeCCCcccCCc-----cchhHHHHHHHhhhccCCEEEEEEECCCHH-HHHHHHHH
Confidence 0 00111 12225678999999865321 111222334566788999766665543321 11112222
Q ss_pred HHHh------CCCCCceEEEeccCcccCCCCcHHHHhcCc-ccccCCCeEEEEeCChhhhccC
Q 012279 200 AREV------DPTGERTFGVLTKLDLMDKGTNALDVLEGR-SYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 200 ~~~~------d~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
...+ .+.+.|+++|.||+|+........+..... ......+|+.+++.++.+++..
T Consensus 103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~l 165 (198)
T cd04142 103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLL 165 (198)
T ss_pred HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHH
Confidence 2222 245689999999999965432211111100 1123457787777776655443
No 73
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.37 E-value=1.1e-11 Score=108.95 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=50.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.++||||+...... .......+..++..+|.+++++ ++......... .+.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~------~~~~~~~~~~~~~~~d~il~v~-~~~~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL------GREREELARRVLERADLILFVV-DADLRADEEEE-KLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccc------hhhHHHHHHHHHHhCCEEEEEE-eCCCCCCHHHH-HHHHHHHhcCCeEEEEEEccc
Confidence 578999999999874321 1111356677888999655554 44443322222 234444456789999999999
Q ss_pred ccCCCC
Q 012279 219 LMDKGT 224 (467)
Q Consensus 219 ~~~~~~ 224 (467)
+.....
T Consensus 116 ~~~~~~ 121 (163)
T cd00880 116 LLPEEE 121 (163)
T ss_pred cCChhh
Confidence 987543
No 74
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.37 E-value=7.4e-12 Score=111.37 Aligned_cols=149 Identities=13% Similarity=0.186 Sum_probs=83.3
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|++|+|||||+|++++..+.... .+++. ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~-~~t~~-~~------------------------------------------ 37 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIE-DS------------------------------------------ 37 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc-CCcch-he------------------------------------------
Confidence 37999999999999999999998752211 11110 00
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH-HH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DA 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~ 196 (467)
+ ...+.+ ......+.++||||..+ ...+...|++.++++++++...+.. +..- ..
T Consensus 38 ------~---~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~ 94 (162)
T cd04138 38 ------Y---RKQVVI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTY 94 (162)
T ss_pred ------E---EEEEEE-CCEEEEEEEEECCCCcc-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 0 000111 11224577899999644 4667888999999777665443221 1111 11
Q ss_pred H-HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 197 M-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 197 l-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
+ .+.+.....+.|+++|.||+|+........+... ....++..|+.+++.++.++++.
T Consensus 95 ~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 95 REQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQD-LAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccceecHHHHHH-HHHHhCCeEEEecCCCCCCHHHH
Confidence 1 1222233457899999999998763322111110 11122345666666666555443
No 75
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.36 E-value=7.1e-12 Score=111.84 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=84.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+|+|||||++++++..+ +.+....+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 37 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSY------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhE-------------------------------------------
Confidence 699999999999999999998775 322222111100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l 197 (467)
-...........+.++||||... ...+...+++..+++++++...+.+ +. .....
T Consensus 38 ----------~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T cd04139 38 ----------RKKVVLDGEDVQLNILDTAGQED-------------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFR 94 (164)
T ss_pred ----------EEEEEECCEEEEEEEEECCChhh-------------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00001122234688999999654 3456777889999877776533221 00 11122
Q ss_pred H-HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 198 K-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 198 ~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
. +.+.......|+++|+||+|+.+................+..++.+++....++++..
T Consensus 95 ~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 95 EQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 2 2222234578999999999997632221111111112233456677766665554433
No 76
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.36 E-value=7.6e-12 Score=111.80 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=82.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||+|+|++.++.+..... +...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~-------------------------------------------- 37 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQEST-IGAA-------------------------------------------- 37 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-ccee--------------------------------------------
Confidence 6999999999999999999999864311111 1000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+.. ..+.+. .....+.++|+||..+ ...+...|++.+|++|+++...+.+ .-..+..+
T Consensus 38 -----~~~--~~v~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~ 95 (163)
T cd01860 38 -----FLT--QTVNLD-DTTVKFEIWDTAGQER-------------YRSLAPMYYRGAAAAIVVYDITSEE-SFEKAKSW 95 (163)
T ss_pred -----EEE--EEEEEC-CEEEEEEEEeCCchHH-------------HHHHHHHHhccCCEEEEEEECcCHH-HHHHHHHH
Confidence 000 001111 1234678999999532 3556777899999777776554332 12222222
Q ss_pred H---HHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 200 A---REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 200 ~---~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
. +.....+.+.++|+||+|+.+......+............|+.+.+....++...
T Consensus 96 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 96 VKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred HHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 2 2333345789999999998743221111111111122245667776665554433
No 77
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.36 E-value=4.7e-12 Score=112.40 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=57.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
.++.+|||||+...... +.+ ..+...|+. ..|++|+++ ++... .....+..++...+.++++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~--~~~-----~~~~~~~~~~~~~d~vi~v~-d~~~~---~~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY--SED-----EKVARDFLLGEKPDLIVNVV-DATNL---ERNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCC--Chh-----HHHHHHHhcCCCCcEEEEEe-eCCcc---hhHHHHHHHHHHcCCCEEEEEehh
Confidence 57899999998764321 111 244566665 778655554 44431 122334445555678999999999
Q ss_pred cccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhcc
Q 012279 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (467)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~ 254 (467)
|+.+......+. ......++..++.+......++..
T Consensus 112 Dl~~~~~~~~~~-~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 112 DEAEKRGIKIDL-DKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred hhcccccchhhH-HHHHHhhCCCeEEEEccCCCCHHH
Confidence 997643211111 101112234566666666555443
No 78
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.35 E-value=1.3e-11 Score=120.20 Aligned_cols=140 Identities=17% Similarity=0.276 Sum_probs=85.2
Q ss_pred HHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchh
Q 012279 12 NRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEY 90 (467)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~ 90 (467)
.+|.+++..+.+... ..++|+|+|.+|+||||++|+|+|.+....+. ..+|..++..
T Consensus 22 ~~l~~~l~~l~~~~~----------~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~------------ 79 (313)
T TIGR00991 22 TKLLELLGKLKEEDV----------SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMV------------ 79 (313)
T ss_pred HHHHHHHHhcccccc----------cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEE------------
Confidence 455666666655543 77899999999999999999999987532221 1122222110
Q ss_pred HhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHH
Q 012279 91 AEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV 170 (467)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~ 170 (467)
. ...+...+++|||||+.+. ....+...+.+
T Consensus 80 ------------------------------------------~-~~~~G~~l~VIDTPGL~d~------~~~~e~~~~~i 110 (313)
T TIGR00991 80 ------------------------------------------S-RTRAGFTLNIIDTPGLIEG------GYINDQAVNII 110 (313)
T ss_pred ------------------------------------------E-EEECCeEEEEEECCCCCch------HHHHHHHHHHH
Confidence 0 1123468999999999873 23444455667
Q ss_pred HHhhc--CCCeEEEEEecCCc-ccc--cHHHHHHHHHhC--CCCCceEEEeccCcccCCC
Q 012279 171 RSYVE--KPNSVILAISPANQ-DIA--TSDAMKLAREVD--PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 171 ~~yi~--~~~~iIL~V~~a~~-d~~--~~~~l~l~~~~d--~~~~rti~VltK~D~~~~~ 223 (467)
+.|+. .+| +||+|...+. .+. ....++..+.+- ....++|+|+|+.|..+++
T Consensus 111 k~~l~~~g~D-vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 111 KRFLLGKTID-VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHhhcCCCC-EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 77764 356 5666644322 221 123344444332 1247899999999988653
No 79
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=8.9e-12 Score=111.92 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|++++|||||++++.+..+.+.... |... ..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~--t~~~-~~--------------------------------------- 40 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGN--TIGV-DF--------------------------------------- 40 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCC--ccce-EE---------------------------------------
Confidence 46899999999999999999998765221111 1000 00
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--- 194 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~--- 194 (467)
....+.+ ......+.|+||||... ...+...+++.+|++++++...+. .+-.
T Consensus 41 ----------~~~~~~~-~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv~d~~~~-~s~~~~~ 95 (165)
T cd01864 41 ----------TMKTLEI-EGKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAIIAYDITRR-SSFESVP 95 (165)
T ss_pred ----------EEEEEEE-CCEEEEEEEEECCChHH-------------HHHHHHHHhccCCEEEEEEECcCH-HHHHhHH
Confidence 0001111 11224789999999432 466788889999977766554432 1111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+..+....+.+.+.++|.||+|+....
T Consensus 96 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 96 HWIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred HHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 22333334445578899999999997654
No 80
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.35 E-value=7.8e-12 Score=112.11 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=82.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++|+|||||+++++...+ +....+.+....
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~------------------------------------------- 38 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSY------------------------------------------- 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheE-------------------------------------------
Confidence 699999999999999999986654 221111111110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH-
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~- 198 (467)
...+.+. .....+.++||||... ...+...|++..|++|+++...+. .+-....+
T Consensus 39 ---------~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~ 94 (164)
T cd04175 39 ---------RKQVEVD-GQQCMLEILDTAGTEQ-------------FTAMRDLYMKNGQGFVLVYSITAQ-STFNDLQDL 94 (164)
T ss_pred ---------EEEEEEC-CEEEEEEEEECCCccc-------------chhHHHHHHhhCCEEEEEEECCCH-HHHHHHHHH
Confidence 0111222 2235778999999754 356677889999987776654322 11111111
Q ss_pred ---HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 199 ---LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 199 ---l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
+.+.....+.|+++|.||+|+.+......+........+...|+.+.+....+++..
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 95 REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 222223456899999999999754321111111011122334566666655554433
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.34 E-value=7.1e-12 Score=114.57 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...++||||||..+ .......++..+|++++++ ++.... ......+...+...+.++++|+||+|
T Consensus 61 ~~~~~liDtpG~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~-~~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHED-------------FSSEVIRGLSVSDGAILVV-DANEGV-QPQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHH-------------HHHHHHHHHHhcCEEEEEE-ECCCCC-cHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 46899999999754 3556778888999766655 444332 22223334444446799999999999
Q ss_pred ccCC
Q 012279 219 LMDK 222 (467)
Q Consensus 219 ~~~~ 222 (467)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 82
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.34 E-value=6.6e-12 Score=112.03 Aligned_cols=122 Identities=23% Similarity=0.335 Sum_probs=78.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccc--ccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV--TRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~--Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
+|+++|..|||||||+|+|++..+.+...+.. |+.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~------------------------------------------ 38 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI------------------------------------------ 38 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE------------------------------------------
Confidence 48999999999999999999655544433321 1111
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCe--EEEEEecCCcccccHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNS--VILAISPANQDIATSD 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~--iIL~V~~a~~d~~~~~ 195 (467)
....+ ...++++||||+..... +.+..+.+..+...|+...+. .++++++..... ...
T Consensus 39 ------------~~~~~----~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~ 98 (170)
T cd01876 39 ------------NFFNV----NDKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP-TEI 98 (170)
T ss_pred ------------EEEEc----cCeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC-CHh
Confidence 00011 12899999999876432 344455667778888876542 344555554432 233
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...+.+.+...+.++++|+||+|++..+
T Consensus 99 ~~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 99 DLEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 3445566666678999999999997654
No 83
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=1e-11 Score=136.57 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=98.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
..+|.|+++|.+|+|||||+|+|+|...-..+. ..+|+..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~--------------------------------------- 313 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDR--------------------------------------- 313 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEE---------------------------------------
Confidence 346889999999999999999999976411111 1122211
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
+.... ..+...+.+|||||+... ...+...+.+.+..|++.+|.+ ++|+++...+...
T Consensus 314 ---------------~~~~~-~~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~i-L~VvDa~~~~~~~ 371 (712)
T PRK09518 314 ---------------VSYDA-EWAGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADAV-VFVVDGQVGLTST 371 (712)
T ss_pred ---------------EEEEE-EECCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCEE-EEEEECCCCCCHH
Confidence 11111 112357899999998742 2345566778888899999954 5555666554333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCC-eEEEEeCChhhhccCccHHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~V~~~s~~~~~~~~~~~~~ 261 (467)
...++..+...+.++|+|+||+|+........+. +.++++ .+.+++....++++.++.+..
T Consensus 372 -d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 372 -DERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEF-----WKLGLGEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred -HHHHHHHHHhcCCCEEEEEECcccccchhhHHHH-----HHcCCCCeEEEECCCCCCchHHHHHHHH
Confidence 3346666767789999999999987543222222 112221 245666666666555544433
No 84
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.34 E-value=1.2e-11 Score=111.23 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+++|.+++|||||++++++..+.|......+.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------- 46 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI--------------------------------------- 46 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEE---------------------------------------
Confidence 46899999999999999999999776533211111110000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--- 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~--- 193 (467)
..+.+ ......+.++|+||... .......|+..+|++++++...+.+ .-
T Consensus 47 -------------~~~~~-~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 98 (169)
T cd04114 47 -------------KTVEI-KGEKIKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCEE-SFRCL 98 (169)
T ss_pred -------------EEEEE-CCEEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHH-HHHHH
Confidence 00111 11224578999999643 3556678899999766665543221 11
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...+..++.....+.+.++|.||+|+.+..
T Consensus 99 ~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 99 PEWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 122333344455578899999999987543
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.34 E-value=1.1e-11 Score=110.99 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHH---HHhCCCCCceEEEe
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLA---REVDPTGERTFGVL 214 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~---~~~d~~~~rti~Vl 214 (467)
....+.++||||... ...+...+++++|++++++. .+....-.....+. .... .+.++++|+
T Consensus 50 ~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~ 114 (164)
T cd04101 50 NTVELFIFDSAGQEL-------------YSDMVSNYWESPSVFILVYD-VSNKASFENCSRWVNKVRTAS-KHMPGVLVG 114 (164)
T ss_pred CEEEEEEEECCCHHH-------------HHHHHHHHhCCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence 345789999999533 46678889999997666654 43321111112222 2232 358999999
Q ss_pred ccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhc
Q 012279 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (467)
Q Consensus 215 tK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~ 253 (467)
||+|+.+................+..|+.+.+....+++
T Consensus 115 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 153 (164)
T cd04101 115 NKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYE 153 (164)
T ss_pred ECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChH
Confidence 999987543221111110111223345666655554443
No 86
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.34 E-value=8.7e-12 Score=113.38 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
....+.|+||||..+ ...++..|++.+|++|+++. +..... ...+.....+...+.++++|+||+
T Consensus 65 ~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D-~~~~~~-~~~~~~~~~~~~~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLVD-ATQGVE-AQTLANFYLALENNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChh-------------hHHHHHHHHHhcCeEEEEEE-CCCCcc-HhhHHHHHHHHHcCCCEEEEEECC
Confidence 345788999999865 35567788999997766654 443322 222222233334578899999999
Q ss_pred cccC
Q 012279 218 DLMD 221 (467)
Q Consensus 218 D~~~ 221 (467)
|+.+
T Consensus 130 Dl~~ 133 (179)
T cd01890 130 DLPS 133 (179)
T ss_pred CCCc
Confidence 9864
No 87
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.33 E-value=1.4e-11 Score=109.51 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=82.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+++|||||+|++++..+-+..... +....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~------------------------------------------- 37 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHEST-TQASF------------------------------------------- 37 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCc-cceeE-------------------------------------------
Confidence 6899999999999999999998763321111 11110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~--- 196 (467)
... .+.+. .....+.++|+||... ...+...|+.++|++++++...+.+ .-+..
T Consensus 38 ------~~~--~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~ 94 (162)
T cd04123 38 ------FQK--TVNIG-GKRIDLAIWDTAGQER-------------YHALGPIYYRDADGAILVYDITDAD-SFQKVKKW 94 (162)
T ss_pred ------EEE--EEEEC-CEEEEEEEEECCchHH-------------HHHhhHHHhccCCEEEEEEECCCHH-HHHHHHHH
Confidence 000 01111 1224688999999532 3456677888889766665543322 11112
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
+...+...+.+.++++|+||+|+........+.........+..++.+..+...+++...
T Consensus 95 ~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 95 IKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 122233444468999999999987543211111110111223445666666665544433
No 88
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.33 E-value=1.9e-11 Score=112.10 Aligned_cols=115 Identities=19% Similarity=0.348 Sum_probs=71.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+++|||||++++++..+... .|+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~~-------~~t------------------------------------------- 34 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVNT-------VPT------------------------------------------- 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCc-------CCc-------------------------------------------
Confidence 699999999999999999998775211 121
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH-
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~- 198 (467)
.++....+.+.+.......+.++||||..+ ...+...|++.+|++|+++...+.+ .-.....
T Consensus 35 ---~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~-~~~~~~~~ 97 (183)
T cd04152 35 ---KGFNTEKIKVSLGNSKGITFHFWDVGGQEK-------------LRPLWKSYTRCTDGIVFVVDSVDVE-RMEEAKTE 97 (183)
T ss_pred ---cccceeEEEeeccCCCceEEEEEECCCcHh-------------HHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHH
Confidence 011111122222222346789999999643 4567788899999766665533321 1111211
Q ss_pred ---HHHHhCCCCCceEEEeccCcccC
Q 012279 199 ---LAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 199 ---l~~~~d~~~~rti~VltK~D~~~ 221 (467)
+.+.....+.|+++|+||+|+.+
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccc
Confidence 22222335789999999999864
No 89
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.33 E-value=1.3e-11 Score=112.33 Aligned_cols=103 Identities=12% Similarity=0.197 Sum_probs=57.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhC----CCCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVD----PTGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~Vlt 215 (467)
..+.|+||||..+ ...+...|++++|++|+++...+. -+-.....+...+. ..+.++++|.|
T Consensus 63 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCChHH-------------HHHHHHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 4678999999432 467788899999976666554322 11122222222221 23578999999
Q ss_pred cCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
|+|+.+......+.........+..|+.+++.+..+++...
T Consensus 129 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 129 KADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAV 169 (180)
T ss_pred CccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99997543211111111111223456667666665544433
No 90
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.33 E-value=2e-11 Score=113.35 Aligned_cols=121 Identities=25% Similarity=0.310 Sum_probs=69.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|..|+|||||+|+|+|..+ |......+. .. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~-~~--~--------------------------------------- 38 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTG-VV--E--------------------------------------- 38 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccC-cc--c---------------------------------------
Confidence 4799999999999999999999764 321111111 00 0
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
..... ..+..+...+++++||||+..... ...+.++. ..+.+.|. ++++.+ .++ ++....
T Consensus 39 ------~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~~l~~---~~~~~~d~-~l~v~~--~~~-~~~d~~ 98 (197)
T cd04104 39 ------TTMKR--TPYPHPKFPNVTLWDLPGIGSTAF-----PPDDYLEE---MKFSEYDF-FIIISS--TRF-SSNDVK 98 (197)
T ss_pred ------cccCc--eeeecCCCCCceEEeCCCCCcccC-----CHHHHHHH---hCccCcCE-EEEEeC--CCC-CHHHHH
Confidence 00000 012223356899999999976321 11111111 11456674 444443 234 334444
Q ss_pred HHHHhCCCCCceEEEeccCcccCC
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+++.+...+.++++|+||+|+..+
T Consensus 99 ~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 99 LAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHHhCCCEEEEEecccchhh
Confidence 666666668999999999998643
No 91
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.32 E-value=4.3e-12 Score=114.73 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-----cccHHHHHH---HHHhCC-----
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-----IATSDAMKL---AREVDP----- 205 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-----~~~~~~l~l---~~~~d~----- 205 (467)
..++.|+||||+....... +. +......+++.+|.+++++...+.+ ....+...+ ......
T Consensus 43 ~~~~~i~DtpG~~~~~~~~--~~----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG--RG----LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC--CC----ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4678999999986532211 11 1112355677888666655543331 111111111 111111
Q ss_pred --CCCceEEEeccCcccCCCC
Q 012279 206 --TGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 206 --~~~rti~VltK~D~~~~~~ 224 (467)
.+.|+++|+||+|+.....
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred HHhhCCeEEEEEchhcCchhH
Confidence 3689999999999986543
No 92
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.32 E-value=2.6e-11 Score=108.04 Aligned_cols=111 Identities=18% Similarity=0.302 Sum_probs=68.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+++|||||++++++..+.. ..|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-------~~~t------------------------------------------- 30 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-------TIPT------------------------------------------- 30 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-------ccCc-------------------------------------------
Confidence 58999999999999999999987521 1121
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
.++... .+..+....+.++||||... +..+...|++.++++|+++. +.....-......
T Consensus 31 ---~~~~~~----~~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~iv~v~D-~~~~~~~~~~~~~ 89 (160)
T cd04156 31 ---VGFNVE----MLQLEKHLSLTVWDVGGQEK-------------MRTVWKCYLENTDGLVYVVD-SSDEARLDESQKE 89 (160)
T ss_pred ---cCcceE----EEEeCCceEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEE-CCcHHHHHHHHHH
Confidence 000000 01122345799999999753 45667788999997666554 4332111222222
Q ss_pred HHHh-C---CCCCceEEEeccCcccC
Q 012279 200 AREV-D---PTGERTFGVLTKLDLMD 221 (467)
Q Consensus 200 ~~~~-d---~~~~rti~VltK~D~~~ 221 (467)
..++ . ..+.|+++|+||+|+.+
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 90 LKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhchhhcCCCEEEEEECccccc
Confidence 2221 1 14689999999999864
No 93
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.32 E-value=1.6e-11 Score=113.31 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=60.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH---HHHHHHHhC---CCCCceEEE
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---AMKLAREVD---PTGERTFGV 213 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d---~~~~rti~V 213 (467)
..+.|+||||..+ ...+...|++.+|++|++++..+. .+-.. .+....... +.+.|+++|
T Consensus 47 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv 112 (190)
T cd04144 47 CMLEVLDTAGQEE-------------YTALRDQWIREGEGFILVYSITSR-STFERVERFREQIQRVKDESAADVPIMIV 112 (190)
T ss_pred EEEEEEECCCchh-------------hHHHHHHHHHhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 4688999999643 356677899999977766644332 11111 222233322 246799999
Q ss_pred eccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHH
Q 012279 214 LTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (467)
Q Consensus 214 ltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~ 262 (467)
.||+|+.+......+.........+..|+.+++....+++..+..+...
T Consensus 113 gNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 113 GNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred EEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 9999987533211111110111223356777776666666555544433
No 94
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.32 E-value=1.1e-11 Score=111.46 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=58.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---HHHHHHHHhC---CCCCceEE
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVD---PTGERTFG 212 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d---~~~~rti~ 212 (467)
...+.++||||... ...+...|++.++++|++.+..+.. +-. ..+...++.. ....|+++
T Consensus 48 ~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piil 113 (165)
T cd04140 48 ICTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSVTSKQ-SLEELKPIYELICEIKGNNIEKIPIML 113 (165)
T ss_pred EEEEEEEECCCCCc-------------chHHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 35788999999765 2455677788889766665443321 111 1122333332 24679999
Q ss_pred EeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 213 VLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 213 VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
|.||+|+........+............|+.+++..+.++++.+
T Consensus 114 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 114 VGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred EEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHH
Confidence 99999997532211111000111223467777777766655443
No 95
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.31 E-value=1.5e-11 Score=110.15 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=69.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++++|||||++.+++..+-|.... |..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLS--TYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ceeeEEEE----------------------------------------
Confidence 699999999999999999998876332211 11110000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
..+.+ ......+.++||||... ...+...|++++|++|+++...+. ..-.+...+
T Consensus 40 ----------~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~ 94 (161)
T cd04124 40 ----------HNAKF-EGKTILVDFWDTAGQER-------------FQTMHASYYHKAHACILVFDVTRK-ITYKNLSKW 94 (161)
T ss_pred ----------EEEEE-CCEEEEEEEEeCCCchh-------------hhhhhHHHhCCCCEEEEEEECCCH-HHHHHHHHH
Confidence 00011 12235788999999643 466788899999976666654332 211222222
Q ss_pred HHHhC--CCCCceEEEeccCccc
Q 012279 200 AREVD--PTGERTFGVLTKLDLM 220 (467)
Q Consensus 200 ~~~~d--~~~~rti~VltK~D~~ 220 (467)
...+. ....|+++|+||+|+.
T Consensus 95 ~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 95 YEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred HHHHHHhCCCCcEEEEEECccCc
Confidence 22222 1258999999999985
No 96
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.31 E-value=2.3e-11 Score=113.26 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=84.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||++++++..+.+.... |... .
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~--t~~~-d------------------------------------------ 36 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKA--TIGV-D------------------------------------------ 36 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeE-E------------------------------------------
Confidence 699999999999999999998875221111 1000 0
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+.. -.+.+.......+.|+||||... +..+...|+++++++|+++...+.. +-..+..+
T Consensus 37 -----~~~--~~v~~~~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~a~~~ilv~D~t~~~-s~~~~~~~ 95 (201)
T cd04107 37 -----FAL--KVIEWDPNTVVRLQLWDIAGQER-------------FGGMTRVYYRGAVGAIIVFDVTRPS-TFEAVLKW 95 (201)
T ss_pred -----EEE--EEEEECCCCEEEEEEEECCCchh-------------hhhhHHHHhCCCCEEEEEEECCCHH-HHHHHHHH
Confidence 000 01111112235788999999643 4667889999999777766543321 11111111
Q ss_pred HHHh-------CCCCCceEEEeccCcccCCCCcHHHHhcCcccccC-CCeEEEEeCChhhhccCccHHH
Q 012279 200 AREV-------DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 200 ~~~~-------d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
...+ .....|+++|.||+|+.+......+.+.......+ .+|+.+++....+++..+..+.
T Consensus 96 ~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 96 KADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred HHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 1111 12457899999999997422211111110111122 3567777666655554444433
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.31 E-value=3e-11 Score=107.79 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=80.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---------------------------------------------- 35 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGV---------------------------------------------- 35 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccc----------------------------------------------
Confidence 6899999999999999999998752221111100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~--- 196 (467)
+.....+.+ +.....+.++|+||... ...+...+++.+|++++++.. +..-+-...
T Consensus 36 ------~~~~~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~-~~~~s~~~~~~~ 94 (161)
T cd01863 36 ------DFKVKTLTV-DGKKVKLAIWDTAGQER-------------FRTLTSSYYRGAQGVILVYDV-TRRDTFTNLETW 94 (161)
T ss_pred ------eEEEEEEEE-CCEEEEEEEEECCCchh-------------hhhhhHHHhCCCCEEEEEEEC-CCHHHHHhHHHH
Confidence 000011111 22235789999999643 345567788899976666554 321111122
Q ss_pred HHHHHH-hCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhh
Q 012279 197 MKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADI 252 (467)
Q Consensus 197 l~l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~ 252 (467)
+..+.. ....+.+.++|.||+|+........+... ........++.+....+.++
T Consensus 95 ~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi 150 (161)
T cd01863 95 LNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FARKHNMLFIETSAKTRDGV 150 (161)
T ss_pred HHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HHHHcCCEEEEEecCCCCCH
Confidence 222222 23457889999999999744333222211 11122344566655554443
No 98
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.31 E-value=1.5e-11 Score=109.20 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=83.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|+++||||||++++++..+ +....+.+.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~------------------------------------------ 37 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYR------------------------------------------ 37 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEE------------------------------------------
Confidence 489999999999999999998874 3333222221100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH-
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~- 198 (467)
....+ ......+.++|+||... ...+...+++..+++|+++...+.+ .......
T Consensus 38 ----------~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~ 92 (160)
T cd00876 38 ----------KTIVV-DGETYTLDILDTAGQEE-------------FSAMRDLYIRQGDGFILVYSITDRE-SFEEIKGY 92 (160)
T ss_pred ----------EEEEE-CCEEEEEEEEECCChHH-------------HHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHH
Confidence 00111 11235788999999654 3556677888899777766544332 1112222
Q ss_pred --HHHHhCC-CCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhc
Q 012279 199 --LAREVDP-TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (467)
Q Consensus 199 --l~~~~d~-~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~ 253 (467)
......+ .+.++++|+||+|+........+............|+.+..+...+++
T Consensus 93 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 150 (160)
T cd00876 93 REQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINID 150 (160)
T ss_pred HHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHH
Confidence 2222222 478999999999988633221111111112222456666666554443
No 99
>COG2262 HflX GTPases [General function prediction only]
Probab=99.30 E-value=4.2e-11 Score=118.80 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=89.4
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 35 ~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
....|.|++||-.|||||||+|+|+|...+-.+.-..|-.|+.=
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR------------------------------------ 232 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR------------------------------------ 232 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCcee------------------------------------
Confidence 46899999999999999999999999886444444444444200
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT 193 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~ 193 (467)
.+.-+++..+.|-||-|+++. -|..+.+.++. +.+-+.++|.++ .|+++..+ +..
T Consensus 233 ------------------~~~l~~g~~vlLtDTVGFI~~----LP~~LV~AFks-TLEE~~~aDlll-hVVDaSdp~~~~ 288 (411)
T COG2262 233 ------------------RIELGDGRKVLLTDTVGFIRD----LPHPLVEAFKS-TLEEVKEADLLL-HVVDASDPEILE 288 (411)
T ss_pred ------------------EEEeCCCceEEEecCccCccc----CChHHHHHHHH-HHHHhhcCCEEE-EEeecCChhHHH
Confidence 133344678999999999983 36666655533 445567888554 45555443 211
Q ss_pred --HHHHHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 194 --SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 194 --~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
.....+++++.-...|+|.|+||+|++....
T Consensus 289 ~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 289 KLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 2234577788777799999999999987654
No 100
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.30 E-value=2e-11 Score=110.64 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=85.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|++||++++|||||++++++..| +....+.....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~-------------------------------------------- 36 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVD-------------------------------------------- 36 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeE--------------------------------------------
Confidence 699999999999999999999876 32221111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+ ....+.+. ....++.|+||||..+ ...+...|++++|++++++. ++..-.-.....+
T Consensus 37 -----~--~~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d-~~~~~s~~~~~~~ 94 (170)
T cd04108 37 -----F--EMERFEIL-GVPFSLQLWDTAGQER-------------FKCIASTYYRGAQAIIIVFD-LTDVASLEHTRQW 94 (170)
T ss_pred -----E--EEEEEEEC-CEEEEEEEEeCCChHH-------------HHhhHHHHhcCCCEEEEEEE-CcCHHHHHHHHHH
Confidence 0 00111121 2235789999999754 45677888999996666554 4331111112222
Q ss_pred HHH----hCCCCCceEEEeccCcccCCCCc--HHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 200 ARE----VDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 200 ~~~----~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
... ..+...++++|.||+|+.+.... ..+........++..|+.+++.+..+++..+..+.+
T Consensus 95 ~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 95 LEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred HHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 322 23444568999999998654221 111111111122345666776666555544444433
No 101
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.30 E-value=3.4e-11 Score=113.13 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=88.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+|+|++++|||||++++++..+-+......+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~--------------------------------------------- 37 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGV--------------------------------------------- 37 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceece---------------------------------------------
Confidence 47999999999999999999998762221111000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
.+.. ..+.+.......+.++||||... ...+...|+++++++|+++...+.. +-....+
T Consensus 38 -----d~~~--~~i~~~~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~-Sf~~l~~ 96 (211)
T cd04111 38 -----DFFS--RLIEIEPGVRIKLQLWDTAGQER-------------FRSITRSYYRNSVGVLLVFDITNRE-SFEHVHD 96 (211)
T ss_pred -----EEEE--EEEEECCCCEEEEEEEeCCcchh-------------HHHHHHHHhcCCcEEEEEEECCCHH-HHHHHHH
Confidence 0000 01112112224688999999643 4567788999999776666543321 1112222
Q ss_pred HHH----HhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 199 LAR----EVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 199 l~~----~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
+.. ...+...+.++|.||+|+.+......+.........+.+|+.+.+.+..+++..+..+..
T Consensus 97 ~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 97 WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222 223445667889999998764332111111111223356777777766666555554443
No 102
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.30 E-value=4.1e-11 Score=105.78 Aligned_cols=113 Identities=22% Similarity=0.264 Sum_probs=69.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|+++||||||+|+|.|.++.+ ... +|..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~~-~t~~--------------------------------------------- 33 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSE-DTI-PTVG--------------------------------------------- 33 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCc-Ccc-CCCC---------------------------------------------
Confidence 48999999999999999999987621 111 1110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+. ... +... ...+.++||||... .+.+...|++.+|++++++ +++...........
T Consensus 34 -----~~--~~~--~~~~-~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~ 89 (159)
T cd04159 34 -----FN--MRK--VTKG-NVTLKVWDLGGQPR-------------FRSMWERYCRGVNAIVYVV-DAADRTALEAAKNE 89 (159)
T ss_pred -----cc--eEE--EEEC-CEEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEEE-ECCCHHHHHHHHHH
Confidence 00 001 1112 25789999999643 4667888899999766655 44432111111111
Q ss_pred HHH-h---CCCCCceEEEeccCcccCCC
Q 012279 200 ARE-V---DPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 200 ~~~-~---d~~~~rti~VltK~D~~~~~ 223 (467)
... . ...+.|.++|+||+|+.+..
T Consensus 90 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 90 LHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 122 1 12467999999999987643
No 103
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.30 E-value=3.3e-11 Score=107.88 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=56.2
Q ss_pred EEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 144 LIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 144 lVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+|||||.+... + +..+. ...+++.+|++++++ +++...... ...+.. +. .+.++++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~----~----~~~~~-~~~~~~~ad~il~v~-d~~~~~s~~-~~~~~~-~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSH----P----RWYHA-LITTLQDVDMLIYVH-GANDPESRL-PAGLLD-IG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCC----H----HHHHH-HHHHHhcCCEEEEEE-eCCCccccc-CHHHHh-cc-CCCCeEEEEEccccCccc
Confidence 69999986532 1 11222 234578899665554 454322111 111222 22 357899999999986432
Q ss_pred Cc-HHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHH
Q 012279 224 TN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (467)
Q Consensus 224 ~~-~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~ 262 (467)
.+ ..+.+. ......+++.++.+++++++..+..+...
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 11 122221 11222467888888887776665554433
No 104
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.29 E-value=4.6e-11 Score=109.85 Aligned_cols=156 Identities=15% Similarity=0.223 Sum_probs=88.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+|+|+.++|||||++++++..+-+....+.+. .
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~-~------------------------------------------- 36 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGV-D------------------------------------------- 36 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-E-------------------------------------------
Confidence 36999999999999999999998862211111000 0
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH--
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA-- 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~-- 196 (467)
.....+.+ +.....+.++||||... ...+...+++++|++|+++...+.+ +-...
T Consensus 37 --------~~~~~~~~-~~~~~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~-s~~~i~~ 93 (188)
T cd04125 37 --------FKIKTVYI-ENKIIKLQIWDTNGQER-------------FRSLNNSYYRGAHGYLLVYDVTDQE-SFENLKF 93 (188)
T ss_pred --------EEEEEEEE-CCEEEEEEEEECCCcHH-------------HHhhHHHHccCCCEEEEEEECcCHH-HHHHHHH
Confidence 00001111 11235678999999543 3557788899999777766543321 11111
Q ss_pred -HHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 197 -MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 197 -l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
+.......+...+.++|.||.|+.+................+..|+.+.+..+.+++..+..+..
T Consensus 94 ~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 94 WINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred HHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 22233334445789999999998754321111111011122345777777777666555444433
No 105
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.28 E-value=4.1e-11 Score=108.75 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=85.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||++.+.+..| |....++...-
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~~~-------------------------------------------- 38 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIEDA-------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcccce--------------------------------------------
Confidence 699999999999999999998875 32211111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~--- 196 (467)
+ ...+.+. .....+.|+||||... ...+...|+..++++|+++...+.. +-...
T Consensus 39 -----~---~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~l~~~~~~~~d~~ilv~d~~~~~-Sf~~~~~~ 95 (172)
T cd04141 39 -----Y---KQQARID-NEPALLDILDTAGQAE-------------FTAMRDQYMRCGEGFIICYSVTDRH-SFQEASEF 95 (172)
T ss_pred -----E---EEEEEEC-CEEEEEEEEeCCCchh-------------hHHHhHHHhhcCCEEEEEEECCchh-HHHHHHHH
Confidence 0 0011121 2224788999999754 4667888999999877776544332 11111
Q ss_pred HHHHHHh-CCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 197 MKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 197 l~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
....... ...+.|+++|.||+|+.+......+.........+..|+.+.+....+++..+..
T Consensus 96 ~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 96 KKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred HHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 2233333 2346899999999998653221110100011122345666666666555544433
No 106
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.28 E-value=1e-11 Score=116.68 Aligned_cols=126 Identities=24% Similarity=0.369 Sum_probs=71.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccc--cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
+|+++|..+|||||+.|+|+|.+.++.+. ..||..+...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~--------------------------------------- 42 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKY--------------------------------------- 42 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEE---------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCccccccee---------------------------------------
Confidence 69999999999999999999999887763 3455433211
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-- 195 (467)
....+...+++|||||+.+.... ++.+.+.+.+.+......+++ +|+|++.. .+...+
T Consensus 43 ----------------~~~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha-~llVi~~~-r~t~~~~~ 102 (212)
T PF04548_consen 43 ----------------SGEVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHA-FLLVIPLG-RFTEEDRE 102 (212)
T ss_dssp ----------------EEEETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESE-EEEEEETT-B-SHHHHH
T ss_pred ----------------eeeecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeE-EEEEEecC-cchHHHHH
Confidence 01123468999999999774321 122222222222223345675 55566666 553332
Q ss_pred HHHHHHHh-CC-CCCceEEEeccCcccCCCC
Q 012279 196 AMKLAREV-DP-TGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 196 ~l~l~~~~-d~-~~~rti~VltK~D~~~~~~ 224 (467)
.++....+ .+ ...++++|+|..|...+..
T Consensus 103 ~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 103 VLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred HHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 34444433 32 2478999999999887654
No 107
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.28 E-value=2.6e-11 Score=108.10 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH----HHHHHHhCCCCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA----MKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~----l~l~~~~d~~~~rti~Vlt 215 (467)
..+.++||||..+ ...+...|++.++++|+++. +......... ..+.+.....+.|+++|+|
T Consensus 43 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~ii~v~d-~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 43 LKFQVWDLGGQTS-------------IRPYWRCYYSNTDAIIYVVD-STDRDRLGTAKEELHAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence 5788999999754 46678889999997766664 4331111111 1122222224689999999
Q ss_pred cCcccCC
Q 012279 216 KLDLMDK 222 (467)
Q Consensus 216 K~D~~~~ 222 (467)
|+|+.+.
T Consensus 109 K~Dl~~~ 115 (158)
T cd04151 109 KQDMPGA 115 (158)
T ss_pred CCCCCCC
Confidence 9998754
No 108
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.28 E-value=3.6e-11 Score=111.82 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=88.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||++++.+..+-+ .. .+|..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~------------------------------------------ 40 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG------------------------------------------ 40 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc------------------------------------------
Confidence 35689999999999999999999887521 11 11100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+......+.+ +.....+.|+||||... ...+...|+++++++|+++...+.. +-...
T Consensus 41 --------~~~~~~~~~~-~~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~a~~iilv~D~~~~~-s~~~~ 97 (199)
T cd04110 41 --------VDFKIRTVEI-NGERVKLQIWDTAGQER-------------FRTITSTYYRGTHGVIVVYDVTNGE-SFVNV 97 (199)
T ss_pred --------ceeEEEEEEE-CCEEEEEEEEeCCCchh-------------HHHHHHHHhCCCcEEEEEEECCCHH-HHHHH
Confidence 0000011111 12224688999999543 4567788999999777666544321 11222
Q ss_pred HHHHHHhC--CCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 197 MKLAREVD--PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 197 l~l~~~~d--~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
..+...+. ....+.++|.||+|+.+...................|+.+....+.++...+..+.
T Consensus 98 ~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 98 KRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred HHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 22222222 23578899999999875432211111111112234567777776666555544443
No 109
>PTZ00369 Ras-like protein; Provisional
Probab=99.28 E-value=3.9e-11 Score=110.55 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=69.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
-.+|+++|++|+|||||++++.+..+.. ...+.+...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~------------------------------------------ 41 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDS------------------------------------------ 41 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhE------------------------------------------
Confidence 4689999999999999999999877521 111100000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
+ ...+.+ ......+.++||||... ...+...|++.++++|+++...+.+. -....
T Consensus 42 -------~---~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~l~~~~~~~~d~iilv~D~s~~~s-~~~~~ 96 (189)
T PTZ00369 42 -------Y---RKQCVI-DEETCLLDILDTAGQEE-------------YSAMRDQYMRTGQGFLCVYSITSRSS-FEEIA 96 (189)
T ss_pred -------E---EEEEEE-CCEEEEEEEEeCCCCcc-------------chhhHHHHhhcCCEEEEEEECCCHHH-HHHHH
Confidence 0 000111 11224678999999754 35567789999997776665443321 11111
Q ss_pred HHH---HHh-CCCCCceEEEeccCcccC
Q 012279 198 KLA---REV-DPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 198 ~l~---~~~-d~~~~rti~VltK~D~~~ 221 (467)
.+. ... ...+.|+++|.||+|+.+
T Consensus 97 ~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 97 SFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 122 222 233678999999999864
No 110
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.28 E-value=5e-11 Score=111.05 Aligned_cols=150 Identities=13% Similarity=0.192 Sum_probs=86.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
||+|+|+.++||||+++.+.+..|-+ ...+ |-.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~-Ti~--------------------------------------------- 34 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-ACKS-GVG--------------------------------------------- 34 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-cCCC-cce---------------------------------------------
Confidence 79999999999999999999877622 1111 100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---HH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DA 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~ 196 (467)
.++... .+.+ +.....+.|+||||-.+ ...+...|++++|++|+++...+.+ +-. ..
T Consensus 35 ---~~~~~~--~i~~-~~~~v~l~iwDtaGqe~-------------~~~l~~~y~~~ad~iIlVfDvtd~~-Sf~~l~~w 94 (202)
T cd04120 35 ---VDFKIK--TVEL-RGKKIRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITKKE-TFDDLPKW 94 (202)
T ss_pred ---eEEEEE--EEEE-CCEEEEEEEEeCCCchh-------------hHHHHHHHhcCCCEEEEEEECcCHH-HHHHHHHH
Confidence 001001 1112 12236789999999654 4778899999999877766544321 111 12
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccc-cCCCeEEEEeCChhhhccCc
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYR-LQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~lg~~~V~~~s~~~~~~~~ 256 (467)
+..++.....+.++++|.||+|+.+............... .+..|+.+++.++.++++.+
T Consensus 95 ~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 95 MKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred HHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 2334444455789999999999865332211111100001 12346666666655554443
No 111
>PLN03110 Rab GTPase; Provisional
Probab=99.27 E-value=5e-11 Score=112.36 Aligned_cols=152 Identities=13% Similarity=0.163 Sum_probs=85.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
.-+|+++|++++|||||+++|++..+.. ...+ |.. +.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~-t~g---~~-------------------------------------- 48 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKS-TIG---VE-------------------------------------- 48 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCC-cee---EE--------------------------------------
Confidence 4589999999999999999999987521 1111 100 00
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-cHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSD 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~ 195 (467)
+. ...+.+. .....+.|+||||... +..+...|++.++++|+++...+... . ...
T Consensus 49 -------~~--~~~v~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 49 -------FA--TRTLQVE-GKTVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQTFDNVQR 105 (216)
T ss_pred -------EE--EEEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHH
Confidence 00 0011121 2235788999999543 46678889999997666654432211 0 112
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
.+..++...+.+.++++|.||+|+........+............|+.+.+..+.+++..
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 333444445557899999999998643321111111111122345666666555544433
No 112
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.27 E-value=3.7e-11 Score=113.15 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=85.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++|+|||||++++++..| +....+...
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~---------------------------------------------- 34 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIG---------------------------------------------- 34 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcee----------------------------------------------
Confidence 689999999999999999998875 222111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH---H
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---A 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~ 196 (467)
+......+.+.+.....+.|+||||... ...+...|++++|++|+++...+.. +-.. .
T Consensus 35 -----~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-------------~~~l~~~~~~~ad~iilV~D~t~~~-s~~~~~~w 95 (215)
T cd04109 35 -----LDFFSKRVTLPGNLNVTLQVWDIGGQSI-------------GGKMLDKYIYGAHAVFLVYDVTNSQ-SFENLEDW 95 (215)
T ss_pred -----EEEEEEEEEeCCCCEEEEEEEECCCcHH-------------HHHHHHHHhhcCCEEEEEEECCCHH-HHHHHHHH
Confidence 0000001122222235788999999532 3567888999999777766544321 1111 1
Q ss_pred HHHHHHhCC---CCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 197 MKLAREVDP---TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 197 l~l~~~~d~---~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
+..+..... ...++++|.||+|+.+......+.........+..++.+++.++.+++..+..+
T Consensus 96 ~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l 161 (215)
T cd04109 96 YSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQL 161 (215)
T ss_pred HHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 223333321 235689999999997543221111111111223456677777666555444333
No 113
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.27 E-value=4.4e-11 Score=108.10 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=81.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|++++|||||++++++..+ |....+ |-. ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~-t~~---~~~-------------------------------------- 39 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEA-TIG---VDF-------------------------------------- 39 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCcccc-cee---EEE--------------------------------------
Confidence 5799999999999999999998775 322111 100 000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHH-HHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~-~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
....+.+ ......+.++||||... .. .+...|++++|++|+++...+.. .-+...
T Consensus 40 ---------~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 95 (170)
T cd04115 40 ---------RERTVEI-DGERIKVQLWDTAGQER-------------FRKSMVQHYYRNVHAVVFVYDVTNMA-SFHSLP 95 (170)
T ss_pred ---------EEEEEEE-CCeEEEEEEEeCCChHH-------------HHHhhHHHhhcCCCEEEEEEECCCHH-HHHhHH
Confidence 0001111 12235788999999643 22 46778899999877766554321 122222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCC
Q 012279 198 KLAREV----DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (467)
Q Consensus 198 ~l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s 248 (467)
.+...+ .....|+++|.||+|+........+............|+.+.+.+
T Consensus 96 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 96 SWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 233222 234689999999999875433211111111122235677777665
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.27 E-value=8.7e-11 Score=106.49 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+++|++++|||||+++|++..+ +. ..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc----------------------------------------
Confidence 457899999999999999999998753 11 1111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.++.... +.+ +...+.++||||... ++.+...|++.+|++++++...+.+ .-...
T Consensus 46 ------~g~~~~~--~~~---~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 100 (173)
T cd04154 46 ------LGFQIKT--LEY---EGYKLNIWDVGGQKT-------------LRPYWRNYFESTDALIWVVDSSDRL-RLDDC 100 (173)
T ss_pred ------cccceEE--EEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCCHH-HHHHH
Confidence 0011111 111 235789999999643 4567888999999776665543321 11112
Q ss_pred HHHHHHh----CCCCCceEEEeccCcccCC
Q 012279 197 MKLAREV----DPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~----d~~~~rti~VltK~D~~~~ 222 (467)
......+ ...+.++++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 101 KRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 1122221 2246899999999998754
No 115
>PLN03118 Rab family protein; Provisional
Probab=99.26 E-value=6.4e-11 Score=111.16 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=88.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|++++|||||+++|++..+ +.. .+.+...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~-~~t~~~~------------------------------------------ 49 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDL-APTIGVD------------------------------------------ 49 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCc-CCCceeE------------------------------------------
Confidence 35899999999999999999998765 211 1100000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
.....+.+ +.....+.|+||||... ...+...|++++|++|+++...+.+ .-+.+
T Consensus 50 ---------~~~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~vlv~D~~~~~--sf~~~ 104 (211)
T PLN03118 50 ---------FKIKQLTV-GGKRLKLTIWDTAGQER-------------FRTLTSSYYRNAQGIILVYDVTRRE--TFTNL 104 (211)
T ss_pred ---------EEEEEEEE-CCEEEEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEEECCCHH--HHHHH
Confidence 00011111 11234688999999654 3566788999999777776544321 11111
Q ss_pred -----HHHHHhC-CCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHH
Q 012279 198 -----KLAREVD-PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (467)
Q Consensus 198 -----~l~~~~d-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~ 263 (467)
....... ..+.+.++|.||+|+........+............|+.+.+....+++..+..+....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 105 SDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1222222 23568899999999875432211111101112234466777777666665555544433
No 116
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.26 E-value=5.6e-11 Score=107.18 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||++++++..+-+......+...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~----------------------------------------- 42 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF----------------------------------------- 42 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEE-----------------------------------------
Confidence 356899999999999999999998876332211110000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~- 194 (467)
. ...+.+ ......+.|+||||..+ ...+...|++.+|++|++....+.+ +..-
T Consensus 43 ---------~--~~~~~~-~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (170)
T cd04116 43 ---------L--NKDLEV-DGHFVTLQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLS 97 (170)
T ss_pred ---------E--EEEEEE-CCeEEEEEEEeCCChHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHH
Confidence 0 001111 12234778999999533 4667888999999766655433221 1111
Q ss_pred HHHH-HHHHhC---CCCCceEEEeccCcccC
Q 012279 195 DAMK-LAREVD---PTGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 ~~l~-l~~~~d---~~~~rti~VltK~D~~~ 221 (467)
.... +..... +.+.|+++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 1111 111111 34679999999999874
No 117
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.26 E-value=2.7e-11 Score=108.41 Aligned_cols=115 Identities=22% Similarity=0.263 Sum_probs=69.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++++|||||++++.+..+.+....+...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~---------------------------------------------- 36 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED---------------------------------------------- 36 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh----------------------------------------------
Confidence 6999999999999999999988763221111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+.. ..+.+.+ ....+.|+||||..+ +..+...|++++|++|+++...+.. +-.+...+
T Consensus 37 -----~~~--~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~ 94 (163)
T cd04176 37 -----FYR--KEIEVDS-SPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFIVVYSLVNQQ-TFQDIKPM 94 (163)
T ss_pred -----eEE--EEEEECC-EEEEEEEEECCCccc-------------ccchHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 000 0111211 123678999999644 2456777899999777666543321 11112222
Q ss_pred ---HHHh-CCCCCceEEEeccCcccCC
Q 012279 200 ---AREV-DPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 200 ---~~~~-d~~~~rti~VltK~D~~~~ 222 (467)
.... ...+.|+++|.||+|+...
T Consensus 95 ~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 95 RDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhc
Confidence 2222 2357899999999998653
No 118
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.26 E-value=4.8e-11 Score=104.32 Aligned_cols=24 Identities=17% Similarity=0.536 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|+++|++|+|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998764
No 119
>PLN03108 Rab family protein; Provisional
Probab=99.26 E-value=6.7e-11 Score=111.01 Aligned_cols=152 Identities=15% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|++++|||||++.|++..+-+.........
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~------------------------------------------- 42 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE------------------------------------------- 42 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccce-------------------------------------------
Confidence 4689999999999999999999987633221110000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-- 195 (467)
+. ...+.+.+ ....+.++||||... ...+...|++.+|++|+++...+... ...
T Consensus 43 -------~~--~~~i~~~~-~~i~l~l~Dt~G~~~-------------~~~~~~~~~~~ad~~vlv~D~~~~~s-~~~l~ 98 (210)
T PLN03108 43 -------FG--ARMITIDN-KPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRET-FNHLA 98 (210)
T ss_pred -------EE--EEEEEECC-EEEEEEEEeCCCcHH-------------HHHHHHHHhccCCEEEEEEECCcHHH-HHHHH
Confidence 00 00111211 123678999999643 45667888999997776665443221 111
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 196 -AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 196 -~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
.+..+........++++|.||+|+........+............|+.+.++...+++..+
T Consensus 99 ~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 99 SWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 1222223333468899999999987543211111110111223456667766665554433
No 120
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.26 E-value=5.4e-11 Score=108.38 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=83.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+|+|||||++++++..+ +....+.+.....
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~------------------------------------------ 39 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS------------------------------------------ 39 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE------------------------------------------
Confidence 699999999999999999998774 3222221111100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH--
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM-- 197 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l-- 197 (467)
-.+.+ ......+.+|||||..+ +..+...+....++++++++..+.. .-+...
T Consensus 40 ----------~~~~~-~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~ 94 (180)
T cd04137 40 ----------KIIRY-KGQDYHLEIVDTAGQDE-------------YSILPQKYSIGIHGYILVYSVTSRK-SFEVVKVI 94 (180)
T ss_pred ----------EEEEE-CCEEEEEEEEECCChHh-------------hHHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 00011 11234678999999654 2445566788888776666544321 111121
Q ss_pred --HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 198 --KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 198 --~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
.+++.....+.+.++|+||+|+..................+..++.+.+.+..++......+.
T Consensus 95 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 95 YDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred HHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 233333345679999999999875332111111111112223456666666555554444433
No 121
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=2.1e-11 Score=121.82 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCC-----cccccccccccEEEEE
Q 012279 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFL-----PRGSGIVTRRPLVLQL 80 (467)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~l-----P~~~~~~Tr~p~~i~~ 80 (467)
++-..++++++++..+... .-.|+|+|..|+|||||+|||-|..-- |+|..-+|..|+
T Consensus 16 ~~~~~~s~i~~~l~~~~~~-------------~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~---- 78 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDNA-------------PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT---- 78 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH---------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E----
T ss_pred CHHHHHHHHHHHHHHhhcC-------------ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe----
Confidence 3455677777777666532 337999999999999999999885321 111111222221
Q ss_pred eecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCc
Q 012279 81 HKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPD 160 (467)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~ 160 (467)
....|+.+++++||+||+..... +
T Consensus 79 ----------------------------------------------------~Y~~p~~pnv~lWDlPG~gt~~f---~- 102 (376)
T PF05049_consen 79 ----------------------------------------------------PYPHPKFPNVTLWDLPGIGTPNF---P- 102 (376)
T ss_dssp ----------------------------------------------------EEE-SS-TTEEEEEE--GGGSS------
T ss_pred ----------------------------------------------------eCCCCCCCCCeEEeCCCCCCCCC---C-
Confidence 24568889999999999976321 1
Q ss_pred cHHHHHHHHHHHh-----hcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 161 TIVEDIESMVRSY-----VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 161 ~~~~~i~~~~~~y-----i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
...| +..-|.+ ++|.+ ..+ +.....+++.+...|++..+|-||+|.
T Consensus 103 ---------~~~Yl~~~~~~~yD~f-iii~s--~rf-~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 ---------PEEYLKEVKFYRYDFF-IIISS--ERF-TENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp ---------HHHHHHHTTGGG-SEE-EEEES--SS---HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred ---------HHHHHHHccccccCEE-EEEeC--CCC-chhhHHHHHHHHHcCCcEEEEEecccc
Confidence 2233 3345644 44433 233 344556899999999999999999995
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.25 E-value=6.2e-11 Score=108.82 Aligned_cols=113 Identities=15% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.-++|+++|.++|||||++++++|..+-. ..+|..|+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~--------------------------------------- 53 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTS--------------------------------------- 53 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccce---------------------------------------
Confidence 45789999999999999999999976511 011222210
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
..+.+ +...+.++||||... .+.+...|+.+++++|+++...+.+- -...
T Consensus 54 -------------~~~~~---~~~~~~~~D~~G~~~-------------~~~~~~~~~~~ad~ii~vvD~~~~~~-~~~~ 103 (184)
T smart00178 54 -------------EELAI---GNIKFTTFDLGGHQQ-------------ARRLWKDYFPEVNGIVYLVDAYDKER-FAES 103 (184)
T ss_pred -------------EEEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCcHHH-HHHH
Confidence 00111 235788999999754 35677889999997777765543221 1111
Q ss_pred HH-HHHHhC---CCCCceEEEeccCcccC
Q 012279 197 MK-LAREVD---PTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~-l~~~~d---~~~~rti~VltK~D~~~ 221 (467)
.. +.+.+. -.+.|+++|+||.|+..
T Consensus 104 ~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 104 KRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 11 222221 24689999999999853
No 123
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.25 E-value=5.8e-11 Score=107.04 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=82.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|.+||||||+++++++..+.+.-. +.+...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~-~t~~~~-------------------------------------------- 37 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYD-PTIEDS-------------------------------------------- 37 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccC-Ccchhe--------------------------------------------
Confidence 69999999999999999999887632211 111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM 197 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~l 197 (467)
+ ...+.+ ......+.++||||..+ ...+...|++..+.+++++...+.. +.. ....
T Consensus 38 -----~---~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~ 95 (168)
T cd04177 38 -----Y---RKQVEI-DGRQCDLEILDTAGTEQ-------------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELR 95 (168)
T ss_pred -----E---EEEEEE-CCEEEEEEEEeCCCccc-------------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 001111 12235788999999754 3567778888888777665443321 101 1111
Q ss_pred HHHHH-hCCCCCceEEEeccCcccCCCCcHHHHhcCcccccC-CCeEEEEeCChhhhcc
Q 012279 198 KLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINR 254 (467)
Q Consensus 198 ~l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-lg~~~V~~~s~~~~~~ 254 (467)
..... ....+.|+++|.||.|+.+......+.........+ ..|+.+.+.+..+++.
T Consensus 96 ~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 96 EQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred HHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 22222 234578999999999987543221111111111122 4566666666655443
No 124
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.25 E-value=5.2e-11 Score=109.92 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=57.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC--CCCceEEEeccC
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP--TGERTFGVLTKL 217 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK~ 217 (467)
..+.++||||... ...+...|++++|++|+++. .+..-+-.....+...+.. .+.++++|.||+
T Consensus 50 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~iilv~d-~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~ 115 (193)
T cd04118 50 VTLGIWDTAGSER-------------YEAMSRIYYRGAKAAIVCYD-LTDSSSFERAKFWVKELQNLEEHCKIYLCGTKS 115 (193)
T ss_pred EEEEEEECCCchh-------------hhhhhHhhcCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 4578999999644 24556778888996666554 4322111111223333322 268999999999
Q ss_pred cccCCCCc--HH--HHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 218 DLMDKGTN--AL--DVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 218 D~~~~~~~--~~--~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
|+.+.... .. ..+..........++.+.+.+..+++.....+.
T Consensus 116 Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 162 (193)
T cd04118 116 DLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162 (193)
T ss_pred cccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 98753211 00 001101112234466677666666555444443
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.25 E-value=5.7e-11 Score=105.72 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH----HHHHhCCCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK----LAREVDPTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vl 214 (467)
...+.++||||... ...+...++...+++++++...+.+ .-..... +.+.....+.++++|+
T Consensus 42 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd00878 42 NVSFTVWDVGGQDK-------------IRPLWKHYYENTNGIIFVVDSSDRE-RIEEAKEELHKLLNEEELKGVPLLIFA 107 (158)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCcEEEEe
Confidence 45789999999654 3556778889999777665544331 1111211 2222334578999999
Q ss_pred ccCcccCCC
Q 012279 215 TKLDLMDKG 223 (467)
Q Consensus 215 tK~D~~~~~ 223 (467)
||+|+....
T Consensus 108 nK~D~~~~~ 116 (158)
T cd00878 108 NKQDLPGAL 116 (158)
T ss_pred eccCCcccc
Confidence 999987643
No 126
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.25 E-value=7.9e-11 Score=105.55 Aligned_cols=149 Identities=13% Similarity=0.182 Sum_probs=84.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++++|||||++.+++..+.|.... |..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--t~~~~------------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHIS--TIGVD------------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeeE-------------------------------------------
Confidence 689999999999999999999886332211 11000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+ ....+.+. .....+.++||||... ...+...|+.++|++++++...+.. +-.....+
T Consensus 37 -----~--~~~~~~~~-~~~~~l~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-sf~~~~~~ 94 (161)
T cd04117 37 -----F--KMKTIEVD-GIKVRIQIWDTAGQER-------------YQTITKQYYRRAQGIFLVYDISSER-SYQHIMKW 94 (161)
T ss_pred -----E--EEEEEEEC-CEEEEEEEEeCCCcHh-------------HHhhHHHHhcCCcEEEEEEECCCHH-HHHHHHHH
Confidence 0 00011121 1224688999999543 3556778899999776665433321 11122222
Q ss_pred HH---HhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 200 AR---EVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 200 ~~---~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
.. ...+...+.++|.||.|+.+......+.........+.+|+.+.+....+++..
T Consensus 95 ~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 95 VSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKES 153 (161)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 22 334456789999999998754421111111111123356777777666554433
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.24 E-value=1.1e-10 Score=104.88 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=45.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh----CCCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vl 214 (467)
...+.++||||... +..+...+++.++++++++...+.+ ...........+ ...+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQES-------------LRSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 46899999999754 3566778899999766665543321 112222222222 22478999999
Q ss_pred ccCcccCC
Q 012279 215 TKLDLMDK 222 (467)
Q Consensus 215 tK~D~~~~ 222 (467)
||+|+...
T Consensus 115 NK~D~~~~ 122 (167)
T cd04160 115 NKQDLPDA 122 (167)
T ss_pred EccccccC
Confidence 99998654
No 128
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.24 E-value=7e-11 Score=106.76 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=44.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh-C---CCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-D---PTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~Vl 214 (467)
...+.++||||... ...+...|++.+|++|+++...+.. .-.+.......+ . ..+.++++|.
T Consensus 42 ~~~i~l~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~s~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHK-------------LRPLWKHYYLNTQAVVFVVDSSHRD-RVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChh-------------cchHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 45789999999754 2556788899999777766544321 111222222222 1 1247899999
Q ss_pred ccCcccCC
Q 012279 215 TKLDLMDK 222 (467)
Q Consensus 215 tK~D~~~~ 222 (467)
||.|+.+.
T Consensus 108 NK~Dl~~~ 115 (169)
T cd04158 108 NKQDVAGA 115 (169)
T ss_pred eCcCcccC
Confidence 99998653
No 129
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.24 E-value=8.5e-11 Score=105.81 Aligned_cols=114 Identities=21% Similarity=0.288 Sum_probs=70.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|+.|+|||||+|++++..+ |..... |....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~~-~~~~~------------------------------------------- 36 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVPR-VLPEI------------------------------------------- 36 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCCC-cccce-------------------------------------------
Confidence 689999999999999999998875 322111 10000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH----
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---- 195 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---- 195 (467)
.+...+. .....+.++||||... .......+++.+|.+++++ +++..-....
T Consensus 37 ---------~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~-d~~~~~s~~~~~~~ 92 (166)
T cd01893 37 ---------TIPADVT-PERVPTTIVDTSSRPQ-------------DRANLAAEIRKANVICLVY-SVDRPSTLERIRTK 92 (166)
T ss_pred ---------Eeeeeec-CCeEEEEEEeCCCchh-------------hhHHHhhhcccCCEEEEEE-ECCCHHHHHHHHHH
Confidence 0111111 2235788999999754 2345667788999766655 4443221221
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
....++...+ +.++++|.||+|+.+..
T Consensus 93 ~~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 93 WLPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHHHhCC-CCCEEEEEEchhccccc
Confidence 2233444443 78999999999997644
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.24 E-value=1.2e-10 Score=107.89 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...+.|+||||..+ +..++..|++.+|++++++. +..+... ....+.+.+...+.|.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~~-------------~~~~~~~~~~~~d~~ilV~d-~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHAD-------------FGGEVERVLSMVDGVLLLVD-ASEGPMP-QTRFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHHhcCEEEEEEE-CCCCccH-HHHHHHHHHHHcCCCEEEEEECCC
Confidence 46889999999754 45678889999997666555 4433322 222334444445789999999999
Q ss_pred ccCC
Q 012279 219 LMDK 222 (467)
Q Consensus 219 ~~~~ 222 (467)
+.+.
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9753
No 131
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.24 E-value=5.4e-11 Score=108.12 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=68.9
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+++|.+++|||||+++|++..+.+. .+|-.+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~---~~t~~~~----------------------------------------- 50 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT---SPTIGSN----------------------------------------- 50 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc---CCccccc-----------------------------------------
Confidence 45899999999999999999987765211 1111000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
...+.+ +...+.++||||... +..+...|++.+|.+|+++...+.+ .-....
T Consensus 51 -----------~~~~~~---~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~vi~V~D~s~~~-~~~~~~ 102 (174)
T cd04153 51 -----------VEEIVY---KNIRFLMWDIGGQES-------------LRSSWNTYYTNTDAVILVIDSTDRE-RLPLTK 102 (174)
T ss_pred -----------eEEEEE---CCeEEEEEECCCCHH-------------HHHHHHHHhhcCCEEEEEEECCCHH-HHHHHH
Confidence 001111 235789999999754 4566778889999776666543321 111111
Q ss_pred HHHHH-h---CCCCCceEEEeccCcccC
Q 012279 198 KLARE-V---DPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 198 ~l~~~-~---d~~~~rti~VltK~D~~~ 221 (467)
..... + .....|+++|+||+|+..
T Consensus 103 ~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 103 EELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 11222 2 123589999999999865
No 132
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.23 E-value=8.8e-12 Score=114.85 Aligned_cols=132 Identities=23% Similarity=0.350 Sum_probs=76.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
...|+++|+.++|||||+++|++..- ..++... ......+ .... ..+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~------~~~~~~~----------~~~~~~~--------------~~~~--~~e~ 50 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAG------AIDKRGI----------EETKNAF--------------LDKH--PEER 50 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHT------SSSSHHH----------HHHHHCH--------------HHSS--HHHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhcc------ccccccc----------ccccccc--------------cccc--chhh
Confidence 45799999999999999999997542 1111000 0000000 0000 0111
Q ss_pred hcCCCCCcCCCcEEEEee-cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 118 VTGKTKQISPIPIHLSIY-SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~-~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
..+ ++...-..... ......++|+||||..+ +...+...+..+|++|++ +++..+. ....
T Consensus 51 ~~~----~ti~~~~~~~~~~~~~~~i~~iDtPG~~~-------------f~~~~~~~~~~~D~ailv-Vda~~g~-~~~~ 111 (188)
T PF00009_consen 51 ERG----ITIDLSFISFEKNENNRKITLIDTPGHED-------------FIKEMIRGLRQADIAILV-VDANDGI-QPQT 111 (188)
T ss_dssp HCT----SSSSSEEEEEEBTESSEEEEEEEESSSHH-------------HHHHHHHHHTTSSEEEEE-EETTTBS-THHH
T ss_pred hcc----cccccccccccccccccceeecccccccc-------------eeecccceecccccceee-eeccccc-cccc
Confidence 112 33333333333 35567999999999643 234455558899965554 5566554 3344
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
.+.++.+...+.|.|+|+||+|+.
T Consensus 112 ~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 112 EEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ccccccccccccceEEeeeeccch
Confidence 455666666678899999999998
No 133
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.23 E-value=7.7e-11 Score=106.37 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhC----CCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVD----PTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~Vl 214 (467)
...+.++|+||... ++.+...|+++++++|+++...+.+ .-..+......+. ..+.|+++|+
T Consensus 42 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 42 KYEVCIFDLGGGAN-------------FRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 35789999999643 4677889999999777766544432 1222222333321 2468999999
Q ss_pred ccCcccCCC
Q 012279 215 TKLDLMDKG 223 (467)
Q Consensus 215 tK~D~~~~~ 223 (467)
||.|+.+..
T Consensus 108 NK~Dl~~~~ 116 (167)
T cd04161 108 NKQDKKNAL 116 (167)
T ss_pred eCCCCcCCC
Confidence 999987543
No 134
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.23 E-value=8.7e-11 Score=106.21 Aligned_cols=113 Identities=18% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+++|.+++|||||+++|.+..+.. . .|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--~-----~~t---------------------------------------- 40 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--T-----IPT---------------------------------------- 40 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--c-----cCC----------------------------------------
Confidence 45689999999999999999998765411 1 111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.++... . +.. ....+.++||||..+ .+.+...|++++|++|+++...+.. +-...
T Consensus 41 ------~g~~~~--~--~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~a~~ii~v~D~t~~~-s~~~~ 95 (168)
T cd04149 41 ------VGFNVE--T--VTY-KNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRD-RIDEA 95 (168)
T ss_pred ------cccceE--E--EEE-CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCchh-hHHHH
Confidence 000000 0 111 235789999999754 4566788999999777666544321 12222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCcccC
Q 012279 197 MKLAREV-D---PTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~l~~~~-d---~~~~rti~VltK~D~~~ 221 (467)
.+...++ . ..+.++++|.||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 96 RQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 2323222 2 13579999999999865
No 135
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.23 E-value=6.3e-11 Score=110.06 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH----HHHHhCCCCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK----LAREVDPTGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 215 (467)
..+.|+||||... ...+...|+..+|++|+++. +.....-..... +.......+.++++|+|
T Consensus 47 ~~l~i~D~~G~~~-------------~~~~~~~~~~~ad~vilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYS-------------FPAMRKLSIQNSDAFALVYA-VDDPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchh-------------hhHHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 4788999999754 24456678899997776664 433211121211 22222335789999999
Q ss_pred cCcccCC
Q 012279 216 KLDLMDK 222 (467)
Q Consensus 216 K~D~~~~ 222 (467)
|+|+...
T Consensus 113 K~Dl~~~ 119 (198)
T cd04147 113 KADSLEE 119 (198)
T ss_pred ccccccc
Confidence 9998753
No 136
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.21 E-value=6.4e-11 Score=106.32 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=42.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---HHHHHHhC--CCCCceEEEe
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MKLAREVD--PTGERTFGVL 214 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d--~~~~rti~Vl 214 (467)
..+.++||||..... ......+++.+|++|+++. ++..-+-... +..+.... ..+.|+++|.
T Consensus 47 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~ 113 (165)
T cd04146 47 VSLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYS-ITDRSSFDEISQLKQLIREIKKRDREIPVILVG 113 (165)
T ss_pred EEEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 467899999986411 2235567888997666654 4332111111 22333333 3368899999
Q ss_pred ccCcccCC
Q 012279 215 TKLDLMDK 222 (467)
Q Consensus 215 tK~D~~~~ 222 (467)
||+|+...
T Consensus 114 nK~Dl~~~ 121 (165)
T cd04146 114 NKADLLHY 121 (165)
T ss_pred ECCchHHh
Confidence 99998643
No 137
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.21 E-value=2.2e-10 Score=103.11 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=71.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
||+++|++++|||||++++++..+ +... .|+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~pt------------------------------------------- 31 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VPT------------------------------------------- 31 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----ccc-------------------------------------------
Confidence 689999999999999999998764 2111 111
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
.++. . +.+.. ....+.++||||... .+.+...|++++|++|+++...+.. .-......
T Consensus 32 ---~g~~--~--~~i~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~ 89 (164)
T cd04162 32 ---TGFN--S--VAIPT-QDAIMELLEIGGSQN-------------LRKYWKRYLSGSQGLIFVVDSADSE-RLPLARQE 89 (164)
T ss_pred ---CCcc--e--EEEee-CCeEEEEEECCCCcc-------------hhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 0010 0 11222 235789999999654 3566788999999877666543321 11222222
Q ss_pred HHHhC--CCCCceEEEeccCcccCCC
Q 012279 200 AREVD--PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 200 ~~~~d--~~~~rti~VltK~D~~~~~ 223 (467)
...+. ..+.|+++|.||.|+....
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 23331 2478999999999986543
No 138
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.20 E-value=1.4e-10 Score=107.19 Aligned_cols=67 Identities=21% Similarity=0.361 Sum_probs=40.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--HHHHHHHHhCCCCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK 216 (467)
...+++|||||... +.......+..+|++++++ ++......+ +.+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~-------------~~~~~~~~~~~~d~vi~Vv-D~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHAS-------------LIRTIIGGAQIIDLMLLVV-DATKGIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEE-ECCCCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 46899999999732 1222334456678655554 454433222 22333322 36799999999
Q ss_pred CcccCC
Q 012279 217 LDLMDK 222 (467)
Q Consensus 217 ~D~~~~ 222 (467)
+|+...
T Consensus 130 ~Dl~~~ 135 (192)
T cd01889 130 IDLIPE 135 (192)
T ss_pred cccCCH
Confidence 999853
No 139
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.20 E-value=2.2e-10 Score=105.40 Aligned_cols=113 Identities=14% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+++|++|||||||+++|++..+.+ ..+|..|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~--------------------------------------- 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTS--------------------------------------- 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcce---------------------------------------
Confidence 56889999999999999999999876411 112222210
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
..+.+ +...+.++|+||... .+.+...|+..++.+|+++...+... -...
T Consensus 56 -------------~~i~~---~~~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~iilV~D~~~~~s-~~~~ 105 (190)
T cd00879 56 -------------EELTI---GNIKFKTFDLGGHEQ-------------ARRLWKDYFPEVDGIVFLVDAADPER-FQES 105 (190)
T ss_pred -------------EEEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEECCcHHH-HHHH
Confidence 01111 134678999999543 35667889999997766665443211 1111
Q ss_pred HHHHHH-h---CCCCCceEEEeccCcccC
Q 012279 197 MKLARE-V---DPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~l~~~-~---d~~~~rti~VltK~D~~~ 221 (467)
...... + ...+.|+++|+||+|+..
T Consensus 106 ~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 106 KEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 122222 2 224689999999999864
No 140
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.20 E-value=1.4e-10 Score=103.71 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh-CC---CCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-DP---TGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d~---~~~rti~Vl 214 (467)
...+.++||||..+ ...+...|++++|++|+++...+.+ +-..+.+....+ .. ...|.++|.
T Consensus 43 ~~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 45789999999754 4667888999999776666544322 122222323332 11 247899999
Q ss_pred ccCcccCC
Q 012279 215 TKLDLMDK 222 (467)
Q Consensus 215 tK~D~~~~ 222 (467)
||.|+.+.
T Consensus 109 NK~Dl~~~ 116 (159)
T cd04150 109 NKQDLPNA 116 (159)
T ss_pred ECCCCCCC
Confidence 99998653
No 141
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.20 E-value=7.6e-11 Score=110.46 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=46.2
Q ss_pred cCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhC
Q 012279 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVD 204 (467)
Q Consensus 125 ~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d 204 (467)
++.+.....+ ..+...+.|+||||... +...+..++..+|.+|+++ ++...+..+ .......+.
T Consensus 63 ~T~~~~~~~~-~~~~~~~~liDTpG~~~-------------~~~~~~~~~~~ad~~llVv-D~~~~~~~~-~~~~~~~~~ 126 (208)
T cd04166 63 ITIDVAYRYF-STPKRKFIIADTPGHEQ-------------YTRNMVTGASTADLAILLV-DARKGVLEQ-TRRHSYILS 126 (208)
T ss_pred cCeecceeEE-ecCCceEEEEECCcHHH-------------HHHHHHHhhhhCCEEEEEE-ECCCCccHh-HHHHHHHHH
Confidence 3433333333 34567899999999633 2223445778899655554 555443222 222222222
Q ss_pred CCC-CceEEEeccCcccCC
Q 012279 205 PTG-ERTFGVLTKLDLMDK 222 (467)
Q Consensus 205 ~~~-~rti~VltK~D~~~~ 222 (467)
..+ .++|+|+||+|+...
T Consensus 127 ~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 127 LLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HcCCCcEEEEEEchhcccC
Confidence 234 457889999998753
No 142
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.19 E-value=5.8e-11 Score=106.85 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|+++|.+++|||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999999886
No 143
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.19 E-value=1.9e-10 Score=106.14 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.+-+|+|+|+.++|||||+.++.+..+ +.... .|...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t~~~----------------------------------------- 41 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYG-YNMGI----------------------------------------- 41 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-Cccee-----------------------------------------
Confidence 346899999999999999999998765 21110 01000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.+ ....+.+ ......+.|+||||..+ ...+...|++.+|++||++...+. .+-...
T Consensus 42 -------~~--~~~~i~~-~~~~~~l~iwDt~G~~~-------------~~~l~~~~~~~ad~illVfD~t~~-~Sf~~~ 97 (189)
T cd04121 42 -------DY--KTTTILL-DGRRVKLQLWDTSGQGR-------------FCTIFRSYSRGAQGIILVYDITNR-WSFDGI 97 (189)
T ss_pred -------EE--EEEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCH-HHHHHH
Confidence 00 0011112 12235788999999754 467788999999977666654332 112222
Q ss_pred HHHHHHhCC--CCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 197 MKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 197 l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
..+..++.. .+.+.|+|.||.|+........+..+.........|+.+++..+.+++..+..+..
T Consensus 98 ~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 98 DRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred HHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 223333321 36899999999999653221111111111223356788888777776665555443
No 144
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.19 E-value=1.1e-10 Score=125.40 Aligned_cols=109 Identities=23% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
.++.++||||..+.... ... +.+.+.|+. .+| ++++|++++. .++.+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~----s~~---e~v~~~~l~~~~aD-vvI~VvDat~---ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTF----SLE---EEVARDYLLNEKPD-LVVNVVDASN---LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCcc----chH---HHHHHHHHhhcCCC-EEEEEecCCc---chhhHHHHHHHHhcCCCEEEEEehh
Confidence 46899999999874321 111 344666654 566 5555666654 2345666677766789999999999
Q ss_pred cccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
|+.++.....+. +.....++..++.++++++.++++..+...
T Consensus 110 Dl~~~~~i~~d~-~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 110 DEAEKKGIRIDE-EKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred HHHHhCCChhhH-HHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 987543321211 111223445678888888877766555544
No 145
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.19 E-value=1.2e-10 Score=101.01 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|++||+.+||||||+++|.|.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 699999999999999999999875
No 146
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.18 E-value=1.2e-10 Score=110.10 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=48.9
Q ss_pred eecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh-cCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEE
Q 012279 134 IYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFG 212 (467)
Q Consensus 134 i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi-~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~ 212 (467)
++......++||||||..+. ...+..... ..+|.+ ++|+++..+. ......++..+...+.|.++
T Consensus 78 ~~~~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~-llVvda~~g~-~~~d~~~l~~l~~~~ip~iv 143 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYA-MLVVAANAGI-IGMTKEHLGLALALNIPVFV 143 (224)
T ss_pred eeeeCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEE-EEEEECCCCC-cHHHHHHHHHHHHcCCCEEE
Confidence 33445678999999997431 233333322 256754 5556676665 34445566677777899999
Q ss_pred EeccCcccCC
Q 012279 213 VLTKLDLMDK 222 (467)
Q Consensus 213 VltK~D~~~~ 222 (467)
|+||+|+.++
T Consensus 144 vvNK~D~~~~ 153 (224)
T cd04165 144 VVTKIDLAPA 153 (224)
T ss_pred EEECccccCH
Confidence 9999998754
No 147
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.18 E-value=8.4e-11 Score=106.36 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=41.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH----HHHHHHHhCCCCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD----AMKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~----~l~l~~~~d~~~~rti~Vlt 215 (467)
..+.++||||... ...+...+++.+|++|+++...+.. +-.. .+...+... .+.++++|.|
T Consensus 46 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~-~~~piilv~n 110 (174)
T smart00174 46 VELGLWDTAGQED-------------YDRLRPLSYPDTDVFLICFSVDSPA-SFENVKEKWYPEVKHFC-PNTPIILVGT 110 (174)
T ss_pred EEEEEEECCCCcc-------------cchhchhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhC-CCCCEEEEec
Confidence 4689999999654 2345566788999766665433321 1111 112222222 3689999999
Q ss_pred cCcccCC
Q 012279 216 KLDLMDK 222 (467)
Q Consensus 216 K~D~~~~ 222 (467)
|+|+.+.
T Consensus 111 K~Dl~~~ 117 (174)
T smart00174 111 KLDLRED 117 (174)
T ss_pred ChhhhhC
Confidence 9998754
No 148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.18 E-value=4.4e-10 Score=106.34 Aligned_cols=109 Identities=15% Similarity=0.095 Sum_probs=58.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCcccccHHHHHHH---HHhC-CCCCceEEE
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDIATSDAMKLA---REVD-PTGERTFGV 213 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~---~~~d-~~~~rti~V 213 (467)
...+.++||||... .+. ..++. .+|++|+++...+. -+-....++. .... ..+.|+|+|
T Consensus 49 ~~~l~i~Dt~G~~~------------~~~---~~~~~~~ad~iilV~d~td~-~S~~~~~~~~~~l~~~~~~~~~piilV 112 (221)
T cd04148 49 ESTLVVIDHWEQEM------------WTE---DSCMQYQGDAFVVVYSVTDR-SSFERASELRIQLRRNRQLEDRPIILV 112 (221)
T ss_pred EEEEEEEeCCCcch------------HHH---hHHhhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 35789999999751 012 23444 78866665543332 1112122222 2222 246899999
Q ss_pred eccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHH
Q 012279 214 LTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (467)
Q Consensus 214 ltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~ 263 (467)
.||+|+........+............|+.+++....+++..+..+....
T Consensus 113 ~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 113 GNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999875432211111111112234677777777777666655554443
No 149
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.17 E-value=3.8e-10 Score=102.67 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh-C---CCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-D---PTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~Vl 214 (467)
...+.++||||..+ ...+...|++++|++|+++...+.+ .-..+.+....+ . ..+.++++|.
T Consensus 56 ~~~l~l~D~~G~~~-------------~~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~ 121 (175)
T smart00177 56 NISFTVWDVGGQDK-------------IRPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVFA 121 (175)
T ss_pred CEEEEEEECCCChh-------------hHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence 35789999999754 4667889999999777766544332 122223333322 1 1357899999
Q ss_pred ccCcccCC
Q 012279 215 TKLDLMDK 222 (467)
Q Consensus 215 tK~D~~~~ 222 (467)
||.|+.+.
T Consensus 122 NK~Dl~~~ 129 (175)
T smart00177 122 NKQDLPDA 129 (175)
T ss_pred eCcCcccC
Confidence 99998653
No 150
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.17 E-value=2.5e-10 Score=104.72 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=68.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||++++++..+ +....+ |....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~~~-t~~~~------------------------------------------- 36 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEYVP-TVFEN------------------------------------------- 36 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCCCC-eeeee-------------------------------------------
Confidence 699999999999999999999875 322111 10000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH-H
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM-K 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l-~ 198 (467)
+ ...+...+.....+.|+||||... ...+...|++.+|++|+++. .+..-+-.... .
T Consensus 37 -----~---~~~i~~~~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~d-~~~~~s~~~~~~~ 94 (187)
T cd04132 37 -----Y---VTNIQGPNGKIIELALWDTAGQEE-------------YDRLRPLSYPDVDVLLICYA-VDNPTSLDNVEDK 94 (187)
T ss_pred -----e---EEEEEecCCcEEEEEEEECCCchh-------------HHHHHHHhCCCCCEEEEEEE-CCCHHHHHHHHHH
Confidence 0 000111112234688999999543 35566678899997666554 43221111111 1
Q ss_pred HHHHhC--CCCCceEEEeccCcccCC
Q 012279 199 LAREVD--PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 199 l~~~~d--~~~~rti~VltK~D~~~~ 222 (467)
+...+. ..+.|.++|.||.|+.+.
T Consensus 95 ~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 95 WFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 222221 236799999999998754
No 151
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.17 E-value=2.3e-10 Score=111.76 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=76.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCccccccc-ccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV-TRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~-Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..|+|||..|+|||||+|+|++..+.+...... +..+.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~----------------------------------------- 43 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHI----------------------------------------- 43 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCcccccc-----------------------------------------
Confidence 379999999999999999999998754432111 00000
Q ss_pred hcCCCCCcCCCcEEEEeecC-CCCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhh------------c--CCCeEE
Q 012279 118 VTGKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYV------------E--KPNSVI 181 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~-~~~~ltlVDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi------------~--~~~~iI 181 (467)
. ...+.......+... ....+++|||||+...... .+.+.+.+.+.+....|+ . +.++++
T Consensus 44 --~--~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~l 119 (276)
T cd01850 44 --D--KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACL 119 (276)
T ss_pred --C--CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEE
Confidence 0 000000111112111 1247999999999764321 112222332333323332 2 234445
Q ss_pred EEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 182 LAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 182 L~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+++.+....+ ....+++++.+.. +.++|+|+||+|++.+.
T Consensus 120 y~i~~~~~~l-~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 120 YFIEPTGHGL-KPLDIEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred EEEeCCCCCC-CHHHHHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 5554444444 3334677888775 78999999999998643
No 152
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.17 E-value=1.6e-10 Score=100.12 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH----HHHHHhCCCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM----KLAREVDPTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d~~~~rti~Vl 214 (467)
...++++|+||.... ......+++..+.+++++ +++......... .........+.++++|+
T Consensus 44 ~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 44 KVKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVY-DVTDRESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred EEEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 467899999997652 233467788888665555 444432222221 12333445689999999
Q ss_pred ccCcccCCCCcHHHH-hcCcccccCCCeEEEEeCChhh
Q 012279 215 TKLDLMDKGTNALDV-LEGRSYRLQHPWVGIVNRSQAD 251 (467)
Q Consensus 215 tK~D~~~~~~~~~~~-l~~~~~~l~lg~~~V~~~s~~~ 251 (467)
||+|+.......... ...........++.+.+....+
T Consensus 110 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 110 NKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred eccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 999988654332211 1111122234566666655543
No 153
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.17 E-value=7.3e-11 Score=109.31 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEec
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 215 (467)
.+..+++||||||..+ +...+...+..+|+++++ +++..+... ....+++.+...+.+ .|+|+|
T Consensus 62 ~~~~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~ilV-vda~~g~~~-~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 62 TANRHYAHVDCPGHAD-------------YIKNMITGAAQMDGAILV-VSATDGPMP-QTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CCCeEEEEEECcCHHH-------------HHHHHHHHhhhCCEEEEE-EECCCCCcH-HHHHHHHHHHHcCCCcEEEEEe
Confidence 3556899999999743 233345557788966554 556555433 333455555556665 789999
Q ss_pred cCcccC
Q 012279 216 KLDLMD 221 (467)
Q Consensus 216 K~D~~~ 221 (467)
|+|+.+
T Consensus 127 K~D~~~ 132 (195)
T cd01884 127 KADMVD 132 (195)
T ss_pred CCCCCC
Confidence 999975
No 154
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.17 E-value=2.1e-10 Score=103.78 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+..+|+++|++++|||||++++++..|-|....+++. +
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~-~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK-P----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC-c-----------------------------------------
Confidence 4567999999999999999999998862122211110 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.+.... +.+. .....+.++|++|-... ..+...|++++|.+++++ +++..-.-...
T Consensus 41 -------~~~~~~--~~~~-~~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~-d~~~~~s~~~~ 96 (169)
T cd01892 41 -------RYAVNT--VEVY-GQEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVY-DSSDPKSFSYC 96 (169)
T ss_pred -------ceEEEE--EEEC-CeEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEE-eCCCHHHHHHH
Confidence 000001 1111 22246789999996542 345667788999666655 44332111122
Q ss_pred HHHHHHhC-CCCCceEEEeccCcccCC
Q 012279 197 MKLAREVD-PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d-~~~~rti~VltK~D~~~~ 222 (467)
..+.+.+. ..+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 97 AEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHHhccCCCCeEEEEEEccccccc
Confidence 23444442 236899999999998654
No 155
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.16 E-value=6.2e-10 Score=102.03 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh-CC---CCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-DP---TGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d~---~~~rti~Vl 214 (467)
...+.++||||..+ .+.+...|++.+|++|+++...+.+- -..+......+ .. ...++++|.
T Consensus 60 ~~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~ 125 (182)
T PTZ00133 60 NLKFTMWDVGGQDK-------------LRPLWRHYYQNTNGLIFVVDSNDRER-IGDAREELERMLSEDELRDAVLLVFA 125 (182)
T ss_pred CEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence 35789999999744 46678899999998777665443221 11222222222 22 257899999
Q ss_pred ccCcccC
Q 012279 215 TKLDLMD 221 (467)
Q Consensus 215 tK~D~~~ 221 (467)
||.|+.+
T Consensus 126 NK~Dl~~ 132 (182)
T PTZ00133 126 NKQDLPN 132 (182)
T ss_pred eCCCCCC
Confidence 9999864
No 156
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.16 E-value=1.9e-10 Score=109.64 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 157
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.16 E-value=1.7e-10 Score=104.96 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=70.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|+.++|||||++++.+..| |....+.....
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~-------------------------------------------- 37 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDN-------------------------------------------- 37 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeee--------------------------------------------
Confidence 699999999999999999998775 32221111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--HH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DA 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~ 196 (467)
+ ...+.+ +.....+.|+||||..+ ...+...|++++|++|+++...+.+ +..- ..
T Consensus 38 -----~---~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 38 -----Y---AVTVMI-GGEPYTLGLFDTAGQED-------------YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred -----e---EEEEEE-CCEEEEEEEEECCCccc-------------hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 011111 12235788999999754 2445667899999777776544322 1111 11
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+...+...+ ..|+++|.||.|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 222333233 5799999999998654
No 158
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.16 E-value=2.6e-10 Score=123.79 Aligned_cols=161 Identities=17% Similarity=0.303 Sum_probs=95.7
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 34 ~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
+....|.|+|+|..++|||||+++|.+..+.....+..|.
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq---------------------------------------- 279 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQ---------------------------------------- 279 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccc----------------------------------------
Confidence 5567899999999999999999999987652111111111
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
.+....+.+. .......++||||||... +..+...++..+|.+||+| ++..+. .
T Consensus 280 ----------~i~~~~v~~~-~~~~~~kItfiDTPGhe~-------------F~~mr~rg~~~aDiaILVV-DA~dGv-~ 333 (742)
T CHL00189 280 ----------KIGAYEVEFE-YKDENQKIVFLDTPGHEA-------------FSSMRSRGANVTDIAILII-AADDGV-K 333 (742)
T ss_pred ----------ccceEEEEEE-ecCCceEEEEEECCcHHH-------------HHHHHHHHHHHCCEEEEEE-ECcCCC-C
Confidence 0100111111 112346899999999643 5667778899999766665 555443 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCCc-HHHHhcCc-cccc----CCCeEEEEeCChhhhccCccHHH
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGR-SYRL----QHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~-~~~l----~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
....+.++.+...+.|+|+|+||+|+.....+ ....+... ..+. ...++.+++.++.+++.+.+.+.
T Consensus 334 ~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 334 PQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred hhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 23334445555567899999999998753211 12222111 1111 13466777777777666555443
No 159
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.16 E-value=4.4e-10 Score=108.05 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=84.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|++++|||||++++++..| +....+.+. .
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~pTi~-d-------------------------------------------- 35 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EEQYTPTIE-D-------------------------------------------- 35 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCChh-H--------------------------------------------
Confidence 589999999999999999998775 322111100 0
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+... .+.+. .....+.|+||||... ...+...|+..+|++|++++..+.+ +-+....+
T Consensus 36 -----~~~k--~~~i~-~~~~~l~I~Dt~G~~~-------------~~~~~~~~~~~ad~iIlVfdv~~~~-Sf~~i~~~ 93 (247)
T cd04143 36 -----FHRK--LYSIR-GEVYQLDILDTSGNHP-------------FPAMRRLSILTGDVFILVFSLDNRE-SFEEVCRL 93 (247)
T ss_pred -----hEEE--EEEEC-CEEEEEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEeCCCHH-HHHHHHHH
Confidence 0000 01111 1235788999999654 3445666788999766665433321 11222223
Q ss_pred HHHh------------CCCCCceEEEeccCcccCCCCc-HHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 200 AREV------------DPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 200 ~~~~------------d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
..++ .....++|+|.||+|+...... ..++.+-........|+.+++....+++..+..+
T Consensus 94 ~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L 166 (247)
T cd04143 94 REQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166 (247)
T ss_pred HHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 3332 1236799999999999753221 1121110001112456777777766665544443
No 160
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.15 E-value=7.5e-11 Score=112.77 Aligned_cols=153 Identities=21% Similarity=0.271 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..+.|.+||-||||||||||||+...---.....+|-.|.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~---------------------------------------- 234 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPH---------------------------------------- 234 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccc----------------------------------------
Confidence 4567899999999999999999987521123345565552
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc---ccc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---IAT 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d---~~~ 193 (467)
.| .+...+-.++++-|+||++.-+..+ +- +---..+.|++++ ++++|++.+.. -..
T Consensus 235 --iG------------~v~yddf~q~tVADiPGiI~GAh~n--kG----lG~~FLrHiER~~-~l~fVvD~s~~~~~~p~ 293 (366)
T KOG1489|consen 235 --IG------------TVNYDDFSQITVADIPGIIEGAHMN--KG----LGYKFLRHIERCK-GLLFVVDLSGKQLRNPW 293 (366)
T ss_pred --cc------------eeeccccceeEeccCcccccccccc--Cc----ccHHHHHHHHhhc-eEEEEEECCCcccCCHH
Confidence 11 1333344569999999999866432 11 1222345567778 56666666654 222
Q ss_pred HHHHHHHHHhCC-----CCCceEEEeccCcccCCCCcHHHHhcCcccccCCC-eEEEEeCChhhhc
Q 012279 194 SDAMKLAREVDP-----TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADIN 253 (467)
Q Consensus 194 ~~~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~V~~~s~~~~~ 253 (467)
+....+..++.- ...+.++|+||+|+.+...+.+.- ....++.+ .++|++.+++++.
T Consensus 294 ~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~---L~~~lq~~~V~pvsA~~~egl~ 356 (366)
T KOG1489|consen 294 QQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSS---LAKRLQNPHVVPVSAKSGEGLE 356 (366)
T ss_pred HHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHH---HHHHcCCCcEEEeeeccccchH
Confidence 222223444432 136699999999997443332111 12233334 5677777775543
No 161
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.15 E-value=6.5e-10 Score=100.41 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+++|.++||||||+++|.|..+-. ..|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-------~~~t---------------------------------------- 45 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-------ITPT---------------------------------------- 45 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-------cCCC----------------------------------------
Confidence 35689999999999999999999976410 1110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.++... . +.. ....+.++|+||... +..++..|+++++++++++...+... -...
T Consensus 46 ------~g~~~~--~--i~~-~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~D~~~~~~-~~~~ 100 (173)
T cd04155 46 ------QGFNIK--T--VQS-DGFKLNVWDIGGQRA-------------IRPYWRNYFENTDCLIYVIDSADKKR-LEEA 100 (173)
T ss_pred ------CCcceE--E--EEE-CCEEEEEEECCCCHH-------------HHHHHHHHhcCCCEEEEEEeCCCHHH-HHHH
Confidence 000000 1 111 235789999999643 35667788899997666654433211 1111
Q ss_pred H----HHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 M----KLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l----~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
. .+.+.....+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 101 GAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 1 1222222346899999999998754
No 162
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.15 E-value=4.2e-10 Score=120.11 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccccccccccc--EEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP--LVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
..|.|+++|.+++|||||+|+|+|..+.....|..|+-. ..+....
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~-------------------------------- 50 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDV-------------------------------- 50 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeecc--------------------------------
Confidence 579999999999999999999999887444334444321 0000000
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.....+. ... ..++. ...++++|+||||... +..+...++..+|++++++ +++.+...
T Consensus 51 ~~~~~~~----~~~--~~~v~-~~~~~l~~iDTpG~e~-------------f~~l~~~~~~~aD~~IlVv-D~~~g~~~- 108 (590)
T TIGR00491 51 IEGICGD----LLK--KFKIR-LKIPGLLFIDTPGHEA-------------FTNLRKRGGALADLAILIV-DINEGFKP- 108 (590)
T ss_pred ccccccc----ccc--ccccc-cccCcEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEE-ECCcCCCH-
Confidence 0000000 000 00111 1224699999999643 4556677888999665554 55544322
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
.....+..+...+.|.++|+||+|+.+
T Consensus 109 qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 109 QTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 233334444445789999999999974
No 163
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.15 E-value=2e-10 Score=103.53 Aligned_cols=104 Identities=12% Similarity=0.141 Sum_probs=57.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---HHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d~~~~rti~VltK 216 (467)
..+.++||||.... ..+...|+..+|++|+++. .+...+-+.. +..++...+ ..|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 57889999997542 2334567788897766655 4332111111 222233333 6899999999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
+|+.+....... .. ........|+.+++.+..+++.....+.
T Consensus 114 ~Dl~~~~~~~~~-~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 114 VDIKDRKVKAKQ-IT-FHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred hhcccccCCHHH-HH-HHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 998743321111 10 0111234577777777766555544443
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.14 E-value=4.2e-10 Score=120.32 Aligned_cols=157 Identities=19% Similarity=0.269 Sum_probs=93.9
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 34 ~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
+....|.|+++|..++|||||+++|.+..+.....+..|...
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i-------------------------------------- 124 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI-------------------------------------- 124 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc--------------------------------------
Confidence 456779999999999999999999998876322211111110
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
+ ...+..++...++||||||..+ +..+..++...+|.+||++ +++... .
T Consensus 125 ------g----------~~~v~~~~~~~i~~iDTPGhe~-------------F~~~r~rga~~aDiaILVV-da~dgv-~ 173 (587)
T TIGR00487 125 ------G----------AYHVENEDGKMITFLDTPGHEA-------------FTSMRARGAKVTDIVVLVV-AADDGV-M 173 (587)
T ss_pred ------e----------EEEEEECCCcEEEEEECCCCcc-------------hhhHHHhhhccCCEEEEEE-ECCCCC-C
Confidence 0 0012222223799999999754 3455667788899666665 555433 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCC-cHHHHhcCc-ccc----cCCCeEEEEeCChhhhccCccHH
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGR-SYR----LQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~-~~~----l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
......++.....+.|+++|+||+|+.+... ...+.+... ..+ ....++++++.++.+++...+.+
T Consensus 174 ~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 174 PQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred HhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 3334444555556789999999999864321 122222111 011 11246677777777666555444
No 165
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.14 E-value=5.2e-10 Score=98.11 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.1
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccc
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~ 68 (467)
++|+++|.++||||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 579999999999999999999987 45443
No 166
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.14 E-value=2.8e-10 Score=121.98 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=61.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEeccCc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTKLD 218 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 218 (467)
..++|||+||..+ +......++.+.|.+|+ |++++.+...+ ..+.+..+...+.+ .++|+||+|
T Consensus 50 ~~v~~iDtPGhe~-------------f~~~~~~g~~~aD~aIL-VVDa~~G~~~q-T~ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHEK-------------FISNAIAGGGGIDAALL-VVDADEGVMTQ-TGEHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHHH-------------HHHHHHhhhccCCEEEE-EEECCCCCcHH-HHHHHHHHHHcCCCeEEEEEECCC
Confidence 6789999999532 33445567788996655 45565543222 22222233334666 999999999
Q ss_pred ccCCCCc------HHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHH
Q 012279 219 LMDKGTN------ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (467)
Q Consensus 219 ~~~~~~~------~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~ 262 (467)
+.+.... ..+++.+........++++++.++.+++.....+...
T Consensus 115 lv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 115 RVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 9864321 1122221111113457777777777766655554433
No 167
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.14 E-value=3.5e-10 Score=106.82 Aligned_cols=154 Identities=12% Similarity=0.139 Sum_probs=87.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|++||++++|||||+++++...+ +....+ |-
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~-ti------------------------------------------- 46 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEP-TI------------------------------------------- 46 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC-CCccCC-cc-------------------------------------------
Confidence 345899999999999999999887665 211111 00
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
++....+.+... .....+.++||||... ...+...|++.++++|+++...+.. .-...
T Consensus 47 -------g~~~~~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilvfD~~~~~-s~~~i 104 (219)
T PLN03071 47 -------GVEVHPLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNV 104 (219)
T ss_pred -------ceeEEEEEEEEC-CeEEEEEEEECCCchh-------------hhhhhHHHcccccEEEEEEeCCCHH-HHHHH
Confidence 000011111111 1235889999999754 3566778899999777665544331 11211
Q ss_pred HHHH---HHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 197 MKLA---REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 197 l~l~---~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
..+. +... .+.++++|.||+|+.+.......+ . ........|+.+++.+..+++..+..+.
T Consensus 105 ~~w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 105 PTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred HHHHHHHHHhC-CCCcEEEEEEchhhhhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 2222 2233 368999999999986432211111 1 1112234577777766666655554443
No 168
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.4e-10 Score=109.14 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=106.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCc---ccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLP---RGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP---~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (467)
-.-|.|.++|..|.||||+|+.|++.++ | .|..++|.+-+.+-...+.+. ..-....-++.. .|..+...=.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~-ipGnal~vd~~~---pF~gL~~FG~ 130 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGS-IPGNALVVDAKK---PFRGLNKFGN 130 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccc-cCCceeeecCCC---chhhhhhhHH
Confidence 4679999999999999999999999885 6 244455555444433322211 000000111112 2333322222
Q ss_pred HHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 012279 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (467)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~ 192 (467)
.-.++..+ ..+.++-...+++|||||+-+... |.-+..-.+.....-|+.++|-|||+..++.-|++
T Consensus 131 aflnRf~c-----------sqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIs 197 (532)
T KOG1954|consen 131 AFLNRFMC-----------SQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDAHKLDIS 197 (532)
T ss_pred HHHHHHHH-----------hcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEechhhcccc
Confidence 22222222 234555567999999999988543 21111122456778889999988888888888874
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 193 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
. +.-+.+..+......+-+|+||+|.++...
T Consensus 198 d-Ef~~vi~aLkG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 198 D-EFKRVIDALKGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred H-HHHHHHHHhhCCcceeEEEeccccccCHHH
Confidence 3 344577778877889999999999998653
No 169
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.13 E-value=3.1e-10 Score=110.35 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
....++||||||..+ +...+..+++..|++|++| ++..+... ....+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ailVV-Da~~g~~~-~t~~~~~~~~~~~~p~ivviNK~ 126 (270)
T cd01886 62 KDHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAVF-DAVAGVEP-QTETVWRQADRYNVPRIAFVNKM 126 (270)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEEEE-ECCCCCCH-HHHHHHHHHHHcCCCEEEEEECC
Confidence 346899999999764 2344678889999666654 56555533 33445565666688999999999
Q ss_pred cccC
Q 012279 218 DLMD 221 (467)
Q Consensus 218 D~~~ 221 (467)
|+..
T Consensus 127 D~~~ 130 (270)
T cd01886 127 DRTG 130 (270)
T ss_pred CCCC
Confidence 9874
No 170
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.12 E-value=9.4e-10 Score=100.72 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHh-CC---CCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-DP---TGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d~---~~~rti~Vl 214 (467)
...+.++|+||..+ .+.+...|++++|++|+++...+.+ .-..+......+ .. ...+.++|.
T Consensus 60 ~~~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V~D~s~~~-s~~~~~~~l~~~l~~~~~~~~piilv~ 125 (181)
T PLN00223 60 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
T ss_pred CEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcCHhhCCCCEEEEE
Confidence 35789999999533 4678899999999777766544322 122222222222 21 357899999
Q ss_pred ccCcccCC
Q 012279 215 TKLDLMDK 222 (467)
Q Consensus 215 tK~D~~~~ 222 (467)
||.|+.+.
T Consensus 126 NK~Dl~~~ 133 (181)
T PLN00223 126 NKQDLPNA 133 (181)
T ss_pred ECCCCCCC
Confidence 99998654
No 171
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.12 E-value=8.1e-10 Score=116.08 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=78.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
.+|+|+|.+|+||||++|+|+|...+..+. ..+|....++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 379999999999999999999988655443 13333221111
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC--CCeEEEEEecCCc---ccc
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQ---DIA 192 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~--~~~iIL~V~~a~~---d~~ 192 (467)
...+...+.+|||||+..... +....+.+...+..++.. +| ++|+|..... +..
T Consensus 161 -----------------~~idG~~L~VIDTPGL~dt~~---dq~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~~D~e 219 (763)
T TIGR00993 161 -----------------GLVQGVKIRVIDTPGLKSSAS---DQSKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQTRDSN 219 (763)
T ss_pred -----------------EEECCceEEEEECCCCCcccc---chHHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCccccHH
Confidence 011246799999999998532 222344555666677763 56 6666665432 222
Q ss_pred cHHHHHHHHHhCC--CCCceEEEeccCcccCC
Q 012279 193 TSDAMKLAREVDP--TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 193 ~~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 222 (467)
...+++....+-. .-.++|+|+|+.|..++
T Consensus 220 D~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 220 DLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2234444444332 24899999999999964
No 172
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.11 E-value=2.3e-09 Score=109.51 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=32.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEE
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (467)
.+|++||.+|+|||||+|+|++..+.......||+.|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999988644455678887754
No 173
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.11 E-value=8e-10 Score=101.29 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=42.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---HHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 216 (467)
..+.++||+|-.. ...+...|+++++++++++...+.. .-. ..+..++...+...+ |+|.||
T Consensus 49 ~~l~iwDt~G~~~-------------~~~~~~~~~~~a~~iilv~D~t~~~-s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQRE-------------FINMLPLVCNDAVAILFMFDLTRKS-TLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCchh-------------HHHhhHHHCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 5788999999654 3566778999999766666543321 111 223334444444455 789999
Q ss_pred CcccC
Q 012279 217 LDLMD 221 (467)
Q Consensus 217 ~D~~~ 221 (467)
+|+..
T Consensus 114 ~Dl~~ 118 (182)
T cd04128 114 YDLFA 118 (182)
T ss_pred hhccc
Confidence 99863
No 174
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.10 E-value=5.6e-10 Score=122.23 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=93.2
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 34 ~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
+....|.|+|+|..++|||||+++|.+.++.....+..|..
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~--------------------------------------- 326 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQH--------------------------------------- 326 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeee---------------------------------------
Confidence 45688999999999999999999998876521111111100
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
+. ... +... ...++||||||... +..+...++..+|.+||+| +++... .
T Consensus 327 -----------ig--a~~--v~~~-~~~ItfiDTPGhe~-------------F~~m~~rga~~aDiaILVV-dAddGv-~ 375 (787)
T PRK05306 327 -----------IG--AYQ--VETN-GGKITFLDTPGHEA-------------FTAMRARGAQVTDIVVLVV-AADDGV-M 375 (787)
T ss_pred -----------cc--EEE--EEEC-CEEEEEEECCCCcc-------------chhHHHhhhhhCCEEEEEE-ECCCCC-C
Confidence 00 011 1111 35799999999754 3556667888889666655 555443 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCC-cHHHHhc-Ccccc----cCCCeEEEEeCChhhhccCccHHH
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLE-GRSYR----LQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~-~~~~~----l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
......++.+...+.|+|+|+||+|+..... .....+. ..... ....++++++..+.+++.+++.+.
T Consensus 376 ~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 376 PQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred HhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 2333344455556789999999999964321 1111111 11111 113467777777777666555543
No 175
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.10 E-value=6.5e-10 Score=100.62 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=23.1
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
.+|+++|++++|||||++++.+..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998775
No 176
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.10 E-value=7.5e-10 Score=104.46 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=68.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++++|||||++++++..| +. . ..|-...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-~~-~-~~Tig~~------------------------------------------- 35 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-KD-T-VSTVGGA------------------------------------------- 35 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CC-C-CCccceE-------------------------------------------
Confidence 589999999999999999999886 31 1 1111100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH-HHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DAM 197 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~l 197 (467)
+ ........++.|+||||... ...+...|+++++++|+++...+.. +... ..+
T Consensus 36 -----~-------~~~~~~~~~l~iwDt~G~e~-------------~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~ 90 (220)
T cd04126 36 -----F-------YLKQWGPYNISIWDTAGREQ-------------FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRF 90 (220)
T ss_pred -----E-------EEEEeeEEEEEEEeCCCccc-------------chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 00001234689999999654 3556778899999766665433221 1111 111
Q ss_pred HHHHHhCCCCCceEEEeccCcccC
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
....+......++|+|.||+|+.+
T Consensus 91 ~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 91 LGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHhcCCCCcEEEEEECccccc
Confidence 112222334578999999999975
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.08 E-value=1.1e-09 Score=102.21 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=40.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-cc--ccHHHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DI--ATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~-d~--~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
..++||||||... +...+...+...|.+++++. +.. .. .+.+.+..+... ...++++|+||
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~llVvd-~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK 146 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDGALLLIA-ANEPCPQPQTSEHLAALEIM--GLKHIIIVQNK 146 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCEEEEEEE-CCCCCCCcchHHHHHHHHHc--CCCcEEEEEEc
Confidence 6799999999422 34445666778886665554 443 22 122333333222 12468999999
Q ss_pred CcccCC
Q 012279 217 LDLMDK 222 (467)
Q Consensus 217 ~D~~~~ 222 (467)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (203)
T cd01888 147 IDLVKE 152 (203)
T ss_pred hhccCH
Confidence 999753
No 178
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.07 E-value=6.5e-10 Score=100.73 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--HHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK 216 (467)
..+.++||||... ...+...|++++|++|+++...+.. +... ..+...+... .+.++++|.||
T Consensus 48 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDE-------------FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChh-------------hccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 4678999999754 2334556788999776665443321 1111 1122222222 35899999999
Q ss_pred CcccCC
Q 012279 217 LDLMDK 222 (467)
Q Consensus 217 ~D~~~~ 222 (467)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 998653
No 179
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.06 E-value=1.2e-09 Score=106.14 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=48.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
....+.||||||..+ +...+..+++.+|++|+++ ++..+...+ ...+.+.....+.|+++++||+
T Consensus 69 ~~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~IlVv-da~~g~~~~-~~~i~~~~~~~~~P~iivvNK~ 133 (267)
T cd04169 69 RDCVINLLDTPGHED-------------FSEDTYRTLTAVDSAVMVI-DAAKGVEPQ-TRKLFEVCRLRGIPIITFINKL 133 (267)
T ss_pred CCEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEE-ECCCCccHH-HHHHHHHHHhcCCCEEEEEECC
Confidence 457899999999754 2344677888999776655 455444322 2334455555678999999999
Q ss_pred cccCC
Q 012279 218 DLMDK 222 (467)
Q Consensus 218 D~~~~ 222 (467)
|+...
T Consensus 134 D~~~a 138 (267)
T cd04169 134 DREGR 138 (267)
T ss_pred ccCCC
Confidence 98654
No 180
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.06 E-value=1.9e-09 Score=106.92 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=30.4
Q ss_pred EEEECCCCCcHHHHHHHhhCCCCCcccccccccccEE
Q 012279 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (467)
|++||.+|+|||||+|+|++..+-......||+.|+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5899999999999999999988644455568888754
No 181
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.05 E-value=2.3e-09 Score=100.00 Aligned_cols=118 Identities=18% Similarity=0.294 Sum_probs=71.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
|.|+++|+.+||||||++.|.+..+-+..+.+ .+....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~---~~~~~~--------------------------------------- 38 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSI---EPNVAT--------------------------------------- 38 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcE---eecceE---------------------------------------
Confidence 68999999999999999999988652211110 110000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC-CeEEEEEecCCcccccHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP-NSVILAISPANQDIATSDAM 197 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~-~~iIL~V~~a~~d~~~~~~l 197 (467)
..+.. ......+.|||+||..+ ++.+...|++.. +++|+++......-...++.
T Consensus 39 -----------~~~~~-~~~~~~~~l~D~pG~~~-------------~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~ 93 (203)
T cd04105 39 -----------FILNS-EGKGKKFRLVDVPGHPK-------------LRDKLLETLKNSAKGIVFVVDSATFQKNLKDVA 93 (203)
T ss_pred -----------EEeec-CCCCceEEEEECCCCHH-------------HHHHHHHHHhccCCEEEEEEECccchhHHHHHH
Confidence 00000 01235789999999765 466678888888 87777766554311111111
Q ss_pred H----HHH--HhCCCCCceEEEeccCcccCCC
Q 012279 198 K----LAR--EVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 198 ~----l~~--~~d~~~~rti~VltK~D~~~~~ 223 (467)
. +.. .....+.|+++|.||.|+....
T Consensus 94 ~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 94 EFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 1 111 1223479999999999987543
No 182
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.05 E-value=8.6e-10 Score=105.35 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
+...+++|||||..+ +...+..+++..|++|+++. +..+... ....+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~~-------------f~~~~~~~l~~aD~~IlVvd-~~~g~~~-~~~~~~~~~~~~~~P~iivvNK~ 126 (237)
T cd04168 62 EDTKVNLIDTPGHMD-------------FIAEVERSLSVLDGAILVIS-AVEGVQA-QTRILWRLLRKLNIPTIIFVNKI 126 (237)
T ss_pred CCEEEEEEeCCCccc-------------hHHHHHHHHHHhCeEEEEEe-CCCCCCH-HHHHHHHHHHHcCCCEEEEEECc
Confidence 346899999999865 24456778899997766654 5444432 23334445555688999999999
Q ss_pred cccC
Q 012279 218 DLMD 221 (467)
Q Consensus 218 D~~~ 221 (467)
|+..
T Consensus 127 D~~~ 130 (237)
T cd04168 127 DRAG 130 (237)
T ss_pred cccC
Confidence 9874
No 183
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.05 E-value=1.8e-09 Score=97.64 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|+++|++++|||||++++.+..+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~ 25 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999998876
No 184
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.05 E-value=6.9e-10 Score=102.27 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=69.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++++|||||++.+++..| |.... .|-..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~-~~~~~-~t~~~-------------------------------------------- 35 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQVYE-PTVFE-------------------------------------------- 35 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCccC-Cccee--------------------------------------------
Confidence 689999999999999999998875 32111 01000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--HH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DA 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~ 196 (467)
.+. ..+.+ ......+.|+||||... ...+...|++.++++|++.+-.+.+ +.+. ..
T Consensus 36 ----~~~---~~i~~-~~~~~~l~i~Dt~G~~~-------------~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~ 94 (189)
T cd04134 36 ----NYV---HDIFV-DGLHIELSLWDTAGQEE-------------FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKW 94 (189)
T ss_pred ----eeE---EEEEE-CCEEEEEEEEECCCChh-------------ccccccccccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 000 01111 11235789999999643 2344556788899777765433321 2111 12
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+..++...+ +.++++|.||+|+.+..
T Consensus 95 ~~~i~~~~~-~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 95 LGEIREHCP-GVKLVLVALKCDLREAR 120 (189)
T ss_pred HHHHHHhCC-CCCEEEEEEChhhccCh
Confidence 223333333 68999999999997543
No 185
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.05 E-value=2.1e-10 Score=115.49 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=102.2
Q ss_pred hhhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEee
Q 012279 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (467)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~ 82 (467)
+++.+..++.+....+..|.+.-+--.+++.+....++++|||-||+||||++|-++..++ .+ -.+|
T Consensus 133 Algrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----ev-qpYa------- 199 (620)
T KOG1490|consen 133 ALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----EV-QPYA------- 199 (620)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----cc-CCcc-------
Confidence 3445555555555555444433222345666777889999999999999999999887664 11 1111
Q ss_pred cCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccH
Q 012279 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (467)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~ 162 (467)
|....+.+.........+.++||||+.+.+ .+.
T Consensus 200 ------------------------------------------FTTksL~vGH~dykYlrwQViDTPGILD~p-----lEd 232 (620)
T KOG1490|consen 200 ------------------------------------------FTTKLLLVGHLDYKYLRWQVIDTPGILDRP-----EED 232 (620)
T ss_pred ------------------------------------------cccchhhhhhhhhheeeeeecCCccccCcc-----hhh
Confidence 112222222334445688999999998753 333
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCc--ccccHHHHHHHHHhCCC--CCceEEEeccCcccCCCC
Q 012279 163 VEDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPT--GERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 163 ~~~i~~~~~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d~~--~~rti~VltK~D~~~~~~ 224 (467)
...++-.+-..+.+=.+.+|++.+-+. +.+..+-.++...+.|. .+++|+|+||+|.+.+..
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc
Confidence 344444454555565567777766433 44455556677777774 688999999999997543
No 186
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.04 E-value=8.2e-10 Score=107.60 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=47.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
+...+++|||||..+ +...+..++..+|.+++++ ++..+.. .....+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDtPG~~~-------------f~~~~~~~l~~aD~~i~Vv-d~~~g~~-~~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 62 KGHKINLIDTPGYAD-------------FVGETRAALRAADAALVVV-SAQSGVE-VGTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred CCEEEEEEECcCHHH-------------HHHHHHHHHHHCCEEEEEE-eCCCCCC-HHHHHHHHHHHHcCCCEEEEEECC
Confidence 346899999999754 3455677888899666655 4544332 223334455556688999999999
Q ss_pred cccCC
Q 012279 218 DLMDK 222 (467)
Q Consensus 218 D~~~~ 222 (467)
|+...
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 98754
No 187
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.04 E-value=3.4e-09 Score=96.32 Aligned_cols=115 Identities=23% Similarity=0.210 Sum_probs=69.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|+.++|||||+.++++..| +....+ |-.+.
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~-t~~~~------------------------------------------- 37 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF-PGEYIP-TVFDN------------------------------------------- 37 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcCCC-cceee-------------------------------------------
Confidence 699999999999999999998765 322111 10000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--HH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DA 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~ 196 (467)
+ ...+.+ ......+.|+||||... ...+...|++++|++|+++...+.+ +..- ..
T Consensus 38 -----~---~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~ 95 (174)
T cd01871 38 -----Y---SANVMV-DGKPVNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 95 (174)
T ss_pred -----e---EEEEEE-CCEEEEEEEEECCCchh-------------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 001112 12235788999999643 3455677899999877776554432 1111 11
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+...+...+ ..|+++|.||+|+.+.
T Consensus 96 ~~~~~~~~~-~~piilvgnK~Dl~~~ 120 (174)
T cd01871 96 YPEVRHHCP-NTPIILVGTKLDLRDD 120 (174)
T ss_pred HHHHHHhCC-CCCEEEEeeChhhccC
Confidence 222333333 5899999999998643
No 188
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3e-10 Score=101.37 Aligned_cols=153 Identities=17% Similarity=0.255 Sum_probs=89.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..-+||++|++|+|||||++...-..| -+.. .+|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~~Y-----qAT---------------------------------------- 54 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DNTY-----QAT---------------------------------------- 54 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cccc-----cce----------------------------------------
Confidence 346899999999999999999997765 1111 110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.+..|-...+. +.+. ...|.||||.|-.+ ++.++-.|++++..+|++..-.+.. +-...
T Consensus 55 ----IGiDFlskt~~--l~d~-~vrLQlWDTAGQER-------------FrslipsY~Rds~vaviVyDit~~~-Sfe~t 113 (221)
T KOG0094|consen 55 ----IGIDFLSKTMY--LEDR-TVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIVYDITDRN-SFENT 113 (221)
T ss_pred ----eeeEEEEEEEE--EcCc-EEEEEEEecccHHH-------------HhhhhhhhccCCeEEEEEEeccccc-hHHHH
Confidence 01223233232 2222 46889999999754 7999999999999666554333321 12222
Q ss_pred HHHHHHhC----CCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 197 MKLAREVD----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 197 l~l~~~~d----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
-+++..+. +.+..+++|-||.|+.++..-...--......++--|..+....+.++...+
T Consensus 114 ~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 114 SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred HHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 23333332 2245677889999999875422111111122333345566666665554333
No 189
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.02 E-value=1.3e-09 Score=99.34 Aligned_cols=115 Identities=24% Similarity=0.241 Sum_probs=72.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|+.++|||||+..++...| +....+ |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 699999999999999999998775 322211 1100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~ 196 (467)
.+ ...+.+. .....+.|+||+|... ...+...|+++++++||+..-.+.. +.+ ...
T Consensus 37 ----~~---~~~~~~~-~~~v~l~i~Dt~G~~~-------------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 37 ----NF---SANVSVD-GNTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred ----ee---EEEEEEC-CEEEEEEEEECCCCcc-------------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 00 0112222 2336889999999754 3556777999999777776543321 111 112
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+..++...+ ..++++|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 233333333 6899999999999754
No 190
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.02 E-value=1.3e-09 Score=117.43 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEec
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 215 (467)
++...++||||||..+ .+.+ ....+...|.++| |++++.++..+ ..+.+..+...+.+ .|+|+|
T Consensus 48 ~~g~~i~~IDtPGhe~------------fi~~-m~~g~~~~D~~lL-VVda~eg~~~q-T~ehl~il~~lgi~~iIVVlN 112 (614)
T PRK10512 48 PDGRVLGFIDVPGHEK------------FLSN-MLAGVGGIDHALL-VVACDDGVMAQ-TREHLAILQLTGNPMLTVALT 112 (614)
T ss_pred CCCcEEEEEECCCHHH------------HHHH-HHHHhhcCCEEEE-EEECCCCCcHH-HHHHHHHHHHcCCCeEEEEEE
Confidence 3445689999999632 1233 3455778896555 45666554332 22333333334555 579999
Q ss_pred cCcccCCCC--cHHHHhcCcc--ccc-CCCeEEEEeCChhhhccCccHHHH
Q 012279 216 KLDLMDKGT--NALDVLEGRS--YRL-QHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 216 K~D~~~~~~--~~~~~l~~~~--~~l-~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
|+|+.++.. ...+.+.... ..+ ...+++|+..++.+++...+.+..
T Consensus 113 KiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 113 KADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 999986421 1111111000 111 135677788777776666555544
No 191
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.02 E-value=3.2e-09 Score=100.84 Aligned_cols=117 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..-+|+++|+.++|||||++.+++..| +... .|+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi--------------------------------------- 46 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTV--------------------------------------- 46 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCce---------------------------------------
Confidence 345799999999999999999998876 3221 1110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--- 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~--- 193 (467)
+ ..+ ...+.+. .....+.|+||||-.. +..+...|+++++++||+....+.+--.
T Consensus 47 ---~--~~~---~~~i~~~-~~~v~l~iwDTaG~e~-------------~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 47 ---F--ENY---TAGLETE-EQRVELSLWDTSGSPY-------------YDNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred ---e--eee---EEEEEEC-CEEEEEEEEeCCCchh-------------hHHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 0 000 0111221 2235789999999643 4667788999999776665543322101
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
..++..++...+ +.++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 112233444444 578999999999864
No 192
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.02 E-value=1.9e-09 Score=101.73 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=49.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...+.||||||..+ +...+..+++.+|+++|+| ++..+. ......+++.....+.+.++|+||+|
T Consensus 72 ~~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~ilVv-D~~~g~-~~~t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVD-------------FSSEVTAALRLCDGALVVV-DAVEGV-CVQTETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccc-------------cHHHHHHHHHhcCeeEEEE-ECCCCC-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 46789999999875 3556788899999766655 455544 33344456666566789999999999
Q ss_pred cc
Q 012279 219 LM 220 (467)
Q Consensus 219 ~~ 220 (467)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 193
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.02 E-value=2e-09 Score=96.06 Aligned_cols=149 Identities=17% Similarity=0.304 Sum_probs=86.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|+.++|||||++++.+..| |....+.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~-------------------------------------------- 35 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGID-------------------------------------------- 35 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEE--------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccc--------------------------------------------
Confidence 589999999999999999999875 32222111000
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l 197 (467)
.....+.+ ......+.|+|+||... ...+...++++.|++|++....+.. +. -...+
T Consensus 36 -------~~~~~~~~-~~~~~~l~i~D~~g~~~-------------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 36 -------SYSKEVSI-DGKPVNLEIWDTSGQER-------------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWL 94 (162)
T ss_dssp -------EEEEEEEE-TTEEEEEEEEEETTSGG-------------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH
T ss_pred -------cccccccc-ccccccccccccccccc-------------cccccccccccccccccccccccccccccccccc
Confidence 00011111 12335789999999643 3556677899999777665433221 00 11223
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhcc
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~ 254 (467)
.......+...++++|.||.|+.+......+..+......+.+|+.+......++..
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKE 151 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHH
Confidence 344445555689999999999887332211111111223346788877766655443
No 194
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.01 E-value=2.4e-09 Score=98.15 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=72.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+++|+.++|||||++.+++..| +....+ |-..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~p-T~~~------------------------------------------ 40 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFE------------------------------------------ 40 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCccCC-ceee------------------------------------------
Confidence 34799999999999999999998875 322211 1100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--H
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~ 194 (467)
.+ ...+.+ ......+.|+||+|-.. ...+...|++++|++||+....+.+ +.+ .
T Consensus 41 ------~~---~~~~~~-~~~~~~l~iwDtaG~e~-------------~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~ 97 (182)
T cd04172 41 ------NY---TASFEI-DTQRIELSLWDTSGSPY-------------YDNVRPLSYPDSDAVLICFDISRPETLDSVLK 97 (182)
T ss_pred ------ee---EEEEEE-CCEEEEEEEEECCCchh-------------hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 00 011112 22335789999999643 4566778899999777766543321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
.+...++...+ ..++++|.||.|+.+
T Consensus 98 ~w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 98 KWKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 22233444444 589999999999864
No 195
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.99 E-value=2.7e-09 Score=97.48 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=70.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|+.++|||||++++.+..| |....+ |-..
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~-t~~~-------------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYVP-TVFE-------------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcCC-ceEE--------------------------------------------
Confidence 699999999999999999998875 432211 1100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--HHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~ 196 (467)
.+ ...+.+. .....+.|+||||-.. ...+...|+++++++|++..-.+.+ +.. ..+
T Consensus 37 ----~~---~~~~~~~-~~~~~l~iwDt~G~~~-------------~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 37 ----NY---TASFEID-EQRIELSLWDTSGSPY-------------YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred ----EE---EEEEEEC-CEEEEEEEEECCCchh-------------hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 00 0011222 2335789999999643 3455667899999776665443321 111 122
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
...+++..+ ..++++|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 223344444 579999999999864
No 196
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.99 E-value=4e-09 Score=99.12 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=46.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...+.++||||..+ +...+..++..+|++++++. +..... ....++.+.+...+.+.++|+||+|
T Consensus 70 ~~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~llVvD-~~~~~~-~~~~~~~~~~~~~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVN-------------FMDEVAAALRLSDGVVLVVD-VVEGVT-SNTERLIRHAILEGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcc-------------hHHHHHHHHHhCCEEEEEEE-CCCCCC-HHHHHHHHHHHHcCCCEEEEEECcc
Confidence 46789999999865 34557788889997766664 443332 2223344444445689999999999
Q ss_pred cc
Q 012279 219 LM 220 (467)
Q Consensus 219 ~~ 220 (467)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 86
No 197
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.98 E-value=1.9e-09 Score=115.74 Aligned_cols=132 Identities=19% Similarity=0.266 Sum_probs=75.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
...|+++|+.++|||||+++|+... +..++... +..+.|..+ .++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~---------------------~~~~~D~~~--------~Er 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM---------------------REQVLDSMD--------LER 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc---------------------cccccCCCh--------HHH
Confidence 4479999999999999999999753 22222110 000000000 011
Q ss_pred hcCCCCCcCCCcEEEEee--cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 118 VTGKTKQISPIPIHLSIY--SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~--~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
..| ..+....+.+... +.....++||||||..+ +...+..|++.+|++||++ +++.+...+.
T Consensus 48 erG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-------------F~~~v~~~l~~aD~aILVv-Dat~g~~~qt 111 (595)
T TIGR01393 48 ERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-------------FSYEVSRSLAACEGALLLV-DAAQGIEAQT 111 (595)
T ss_pred hcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEe-cCCCCCCHhH
Confidence 112 2233333443332 22336789999999865 3556778899999766655 5655443332
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
.. ........+.+.++|+||+|+.+
T Consensus 112 ~~-~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 112 LA-NVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred HH-HHHHHHHcCCCEEEEEECcCCCc
Confidence 21 11222234678999999999864
No 198
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.97 E-value=4e-09 Score=97.39 Aligned_cols=116 Identities=21% Similarity=0.182 Sum_probs=70.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|+.++|||||+..++...| |... ..|-..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-~~t~~~------------------------------------------- 38 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-IPTVFD------------------------------------------- 38 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-CCceEe-------------------------------------------
Confidence 4799999999999999999998775 3221 111100
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHH--
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSD-- 195 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~~-- 195 (467)
.+ ...+.+ ......+.|+||||-.+ .+.+...|++++|++|++.+-.+.+ +.+-.
T Consensus 39 -----~~---~~~~~~-~~~~~~l~i~Dt~G~e~-------------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~ 96 (191)
T cd01875 39 -----NY---SAQTAV-DGRTVSLNLWDTAGQEE-------------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHK 96 (191)
T ss_pred -----ee---EEEEEE-CCEEEEEEEEECCCchh-------------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 001112 22335789999999754 4667888999999777765543332 11110
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
....++... .+.|+++|.||.|+.+.
T Consensus 97 w~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 97 WHPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 111122222 36899999999998654
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.97 E-value=3e-09 Score=110.53 Aligned_cols=143 Identities=17% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
-..|+++|.+++|||||+++|++..- .+++..+ +.+..-....+..-.++..+.+... .++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g------~i~~~~~-----------~~~~~~~~~~g~~~~~~~~~~D~~~--~Er 66 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETG------AIDEHII-----------EELREEAKEKGKESFKFAWVMDRLK--EER 66 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcC------CcCHHHH-----------HHHHHHHHhcCCcccchhhhhccCH--hHh
Confidence 34699999999999999999997542 2221100 0000000000000001111111111 112
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc--ccccH-
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATS- 194 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~--d~~~~- 194 (467)
..| ++.+.....+. .+...++||||||..+. ..+ ....+..+|.+|++ ++++. +...+
T Consensus 67 ~rG----~T~d~~~~~~~-~~~~~i~liDtpG~~~~------------~~~-~~~~~~~aD~~ilV-vDa~~~~~~~~~~ 127 (425)
T PRK12317 67 ERG----VTIDLAHKKFE-TDKYYFTIVDCPGHRDF------------VKN-MITGASQADAAVLV-VAADDAGGVMPQT 127 (425)
T ss_pred hcC----ccceeeeEEEe-cCCeEEEEEECCCcccc------------hhh-HhhchhcCCEEEEE-EEcccCCCCCcch
Confidence 223 33333333333 34568999999996431 122 23446788966555 45554 33222
Q ss_pred -HHHHHHHHhCCCC-CceEEEeccCcccC
Q 012279 195 -DAMKLAREVDPTG-ERTFGVLTKLDLMD 221 (467)
Q Consensus 195 -~~l~l~~~~d~~~-~rti~VltK~D~~~ 221 (467)
..+.+++. .+ .+.++|+||+|+.+
T Consensus 128 ~~~~~~~~~---~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 128 REHVFLART---LGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 22333333 34 46899999999975
No 200
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.95 E-value=5.1e-09 Score=97.41 Aligned_cols=108 Identities=11% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC--CCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP--TGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK 216 (467)
...+.|+||||..+ ...+...|++.++++|+++. .....+-.....+..++.. .+.++++|.||
T Consensus 43 ~~~l~iwDt~G~e~-------------~~~l~~~~~~~ad~~ilV~D-~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK 108 (200)
T smart00176 43 PIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAIIMFD-VTARVTYKNVPNWHRDLVRVCENIPIVLCGNK 108 (200)
T ss_pred EEEEEEEECCCchh-------------hhhhhHHHhcCCCEEEEEEE-CCChHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 35789999999754 46778889999997766654 3332211212223332321 36899999999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHH
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~ 262 (467)
+|+....... +.+. ........|+.+++.++.+++..+..+...
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9986432111 1111 111234567778877777766666555443
No 201
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.93 E-value=2.9e-09 Score=103.26 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=31.0
Q ss_pred EEEECCCCCcHHHHHHHhhCCCCCcccccccccccEE
Q 012279 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (467)
|++||.||+|||||+|+|+|.+.-+.....||+.|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5899999999999999999998755555678887754
No 202
>PTZ00258 GTP-binding protein; Provisional
Probab=98.93 E-value=5.5e-09 Score=105.77 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=65.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..-.+|++||.||+|||||+|+|+|..........||+.|..-.+...+.. -+ .+ .
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r-~~----------------~l-------~ 74 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDER-FD----------------WL-------C 74 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccch-hh----------------HH-------H
Confidence 466789999999999999999999988655556678888764433211000 00 00 0
Q ss_pred hhhcCCCCCcCCCcEEEEeecC---CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 012279 116 DRVTGKTKQISPIPIHLSIYSP---NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS 185 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~---~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~ 185 (467)
. ++.| ...++.||||||+...... .+.+.+.....|+++|+++++|.
T Consensus 75 -~----------------~~~~~~~~~aqi~lvDtpGLv~ga~~------g~gLg~~fL~~Ir~aD~il~VVd 124 (390)
T PTZ00258 75 -K----------------HFKPKSIVPAQLDITDIAGLVKGASE------GEGLGNAFLSHIRAVDGIYHVVR 124 (390)
T ss_pred -H----------------HcCCcccCCCCeEEEECCCcCcCCcc------hhHHHHHHHHHHHHCCEEEEEEe
Confidence 0 1111 1246899999999974322 23344556677889996665554
No 203
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.93 E-value=5.4e-09 Score=112.00 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
+.++|+||||... +..+...++..+|.+|+++ ++..++. ......+..+...+.++++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~-------------f~~~~~~~~~~aD~~IlVv-Da~~g~~-~qt~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEA-------------FTNLRKRGGALADIAILVV-DINEGFQ-PQTIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHH-------------HHHHHHHhHhhCCEEEEEE-ECCCCCC-HhHHHHHHHHHHcCCCEEEEEECcCC
Confidence 4589999999754 3455667788899666554 5554432 22333334444467899999999998
Q ss_pred c
Q 012279 220 M 220 (467)
Q Consensus 220 ~ 220 (467)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 204
>CHL00071 tufA elongation factor Tu
Probab=98.92 E-value=4.4e-09 Score=108.60 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=46.2
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEec
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 215 (467)
.+..+++||||||..+ .+..+ ..-+..+|.+++ |+++..++.. .....+..+...+.+ .|+|+|
T Consensus 72 ~~~~~~~~iDtPGh~~------------~~~~~-~~~~~~~D~~il-Vvda~~g~~~-qt~~~~~~~~~~g~~~iIvvvN 136 (409)
T CHL00071 72 TENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAIL-VVSAADGPMP-QTKEHILLAKQVGVPNIVVFLN 136 (409)
T ss_pred cCCeEEEEEECCChHH------------HHHHH-HHHHHhCCEEEE-EEECCCCCcH-HHHHHHHHHHHcCCCEEEEEEE
Confidence 3456889999999532 23333 444678885555 5556655533 344455556666777 678999
Q ss_pred cCcccCCC
Q 012279 216 KLDLMDKG 223 (467)
Q Consensus 216 K~D~~~~~ 223 (467)
|+|+.+..
T Consensus 137 K~D~~~~~ 144 (409)
T CHL00071 137 KEDQVDDE 144 (409)
T ss_pred ccCCCCHH
Confidence 99998643
No 205
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.92 E-value=7.6e-09 Score=97.71 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=70.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|||+.++|||||++++++..| |....+ |-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p-Ti~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVP-TVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCC-cccc--------------------------------------------
Confidence 699999999999999999998875 432211 1100
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~--- 196 (467)
.+ ...+.+ ......|.|+||+|-.. ...+...|++.+|++|+++...+.+ +-...
T Consensus 37 ----~~---~~~~~~-~~~~v~L~iwDt~G~e~-------------~~~l~~~~~~~~d~illvfdis~~~-Sf~~i~~~ 94 (222)
T cd04173 37 ----NY---TASFEI-DKRRIELNMWDTSGSSY-------------YDNVRPLAYPDSDAVLICFDISRPE-TLDSVLKK 94 (222)
T ss_pred ----ce---EEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHhHHhccCCCEEEEEEECCCHH-HHHHHHHH
Confidence 00 011222 22345789999999643 3556677899999777666544331 11111
Q ss_pred -HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 -MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 -l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
....+... .+.|+|+|.||+|+.+.
T Consensus 95 w~~~~~~~~-~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 95 WQGETQEFC-PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHHhhC-CCCCEEEEEECcccccc
Confidence 11222222 35899999999998753
No 206
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.91 E-value=3.6e-08 Score=91.77 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH-HHHHHh---------------
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM-KLAREV--------------- 203 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l-~l~~~~--------------- 203 (467)
..+.|+||+|-.. ...+...|+++++++|++..-.+.+ +.+.+ .+..++
T Consensus 54 ~~l~IwDtaG~e~-------------~~~l~~~~yr~ad~iIlVyDvtn~~--Sf~~l~~W~~ei~~~~~~~~~~~~~~~ 118 (202)
T cd04102 54 FFVELWDVGGSES-------------VKSTRAVFYNQVNGIILVHDLTNRK--SSQNLQRWSLEALNKDTFPTGLLVTNG 118 (202)
T ss_pred EEEEEEecCCchh-------------HHHHHHHHhCcCCEEEEEEECcChH--HHHHHHHHHHHHHHhhccccccccccc
Confidence 4688999999754 4677888999999877776544331 11111 222222
Q ss_pred -------CCCCCceEEEeccCcccCC
Q 012279 204 -------DPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 204 -------d~~~~rti~VltK~D~~~~ 222 (467)
.+...|+++|.||.|+.+.
T Consensus 119 ~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 119 DYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccccCCCCceEEEEEECccchhh
Confidence 1235799999999999764
No 207
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.91 E-value=7e-09 Score=111.55 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
....|+++|+.++|||||+++|+... |..++... +..+.|..+ .+
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~---------------------~~~~lD~~~--------~E 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM---------------------KAQVLDSMD--------LE 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc---------------------ccccccCch--------HH
Confidence 45579999999999999999998643 22221100 000001100 01
Q ss_pred hhcCCCCCcCCCcEEEEee--cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIY--SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~--~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
+..| ..+....+.+... ......++||||||..+ +...+.++++.+|++||+| ++..+...+
T Consensus 51 rerG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d-------------F~~~v~~sl~~aD~aILVV-Das~gv~~q 114 (600)
T PRK05433 51 RERG--ITIKAQAVRLNYKAKDGETYILNLIDTPGHVD-------------FSYEVSRSLAACEGALLVV-DASQGVEAQ 114 (600)
T ss_pred hhcC--CcccccEEEEEEEccCCCcEEEEEEECCCcHH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCCHH
Confidence 1112 2233333443332 22246789999999865 3455778899999766655 555544333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
.. .....+...+.+.++|+||+|+..
T Consensus 115 t~-~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 115 TL-ANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred HH-HHHHHHHHCCCCEEEEEECCCCCc
Confidence 22 222223334788999999999864
No 208
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.91 E-value=6.2e-09 Score=94.79 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.--+|+++|.++|||||+++.|.+..+ .+-.||
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~-------~~~~pT---------------------------------------- 45 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEI-------SETIPT---------------------------------------- 45 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSE-------EEEEEE----------------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccc-------cccCcc----------------------------------------
Confidence 445899999999999999999997654 112221
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.++... . +.. ....++++|++|-.. ++.+...|+++.+++|++|+.++.+ .-.++
T Consensus 46 ------~g~~~~--~--i~~-~~~~~~~~d~gG~~~-------------~~~~w~~y~~~~~~iIfVvDssd~~-~l~e~ 100 (175)
T PF00025_consen 46 ------IGFNIE--E--IKY-KGYSLTIWDLGGQES-------------FRPLWKSYFQNADGIIFVVDSSDPE-RLQEA 100 (175)
T ss_dssp ------SSEEEE--E--EEE-TTEEEEEEEESSSGG-------------GGGGGGGGHTTESEEEEEEETTGGG-GHHHH
T ss_pred ------cccccc--e--eee-CcEEEEEEecccccc-------------ccccceeeccccceeEEEEecccce-eeccc
Confidence 011111 1 111 346789999999654 3566888999999877777665443 22333
Q ss_pred HHHHHH-hC---CCCCceEEEeccCcccCC
Q 012279 197 MKLARE-VD---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~-~d---~~~~rti~VltK~D~~~~ 222 (467)
...... +. -.+.|+++++||.|+.+.
T Consensus 101 ~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 101 KEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp HHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccchhhhcchhhcccceEEEEeccccccCc
Confidence 333333 22 236899999999998754
No 209
>PLN03127 Elongation factor Tu; Provisional
Probab=98.90 E-value=6.1e-09 Score=108.25 Aligned_cols=132 Identities=15% Similarity=0.203 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.-..|+++|..++|||||+++|+|..- ..+... ... |. ..|.. ..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~~--~~~--------------~~---------~~D~~--------~~E 105 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAK--AVA--------------FD---------EIDKA--------PEE 105 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHH-Hhhccc--cee--------------ec---------cccCC--------hhH
Confidence 334699999999999999999986420 111100 000 00 00000 011
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+. .+++.+....... .+..+++||||||+.+ .+.++.. -+..+|.++| |++++.+... ..
T Consensus 106 ~~----rGiTi~~~~~~~~-~~~~~i~~iDtPGh~~------------f~~~~~~-g~~~aD~all-VVda~~g~~~-qt 165 (447)
T PLN03127 106 KA----RGITIATAHVEYE-TAKRHYAHVDCPGHAD------------YVKNMIT-GAAQMDGGIL-VVSAPDGPMP-QT 165 (447)
T ss_pred hh----cCceeeeeEEEEc-CCCeEEEEEECCCccc------------hHHHHHH-HHhhCCEEEE-EEECCCCCch-hH
Confidence 11 2334444444333 3446899999999753 1344443 3345885555 5567665533 33
Q ss_pred HHHHHHhCCCCCc-eEEEeccCcccCC
Q 012279 197 MKLAREVDPTGER-TFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~r-ti~VltK~D~~~~ 222 (467)
.+.+..+...+.+ .|+|+||+|+++.
T Consensus 166 ~e~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 166 KEHILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHHHcCCCeEEEEEEeeccCCH
Confidence 4455556666777 4788999999863
No 210
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.89 E-value=1.5e-08 Score=100.83 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....|.|.|.+|||||||+++|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 211
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.89 E-value=9.5e-09 Score=102.91 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=31.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccE
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 76 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~ 76 (467)
++|++||.||+|||||+|+|+|.+........||+.|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~ 40 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPN 40 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccce
Confidence 58999999999999999999998853444467888775
No 212
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.89 E-value=6.7e-09 Score=114.11 Aligned_cols=134 Identities=12% Similarity=0.186 Sum_probs=78.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+...|+|+|.+++|||||+|+|++..- ...+ . .+..+ +....|+.. .+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~~~~-~-----~~~~~------------g~~~~D~~~--------~e 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------RIHK-I-----GEVHD------------GAATMDWME--------QE 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------Cccc-c-----ccccC------------CccccCCCH--------HH
Confidence 466899999999999999999986431 1111 0 00000 001111111 11
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+..| ++.+.....+.. +...++||||||..+. ...+..+++..|++|++| ++..+...+ .
T Consensus 57 ~~rg----iti~~~~~~~~~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVv-da~~g~~~~-~ 116 (689)
T TIGR00484 57 KERG----ITITSAATTVFW-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVL-DAVGGVQPQ-S 116 (689)
T ss_pred HhcC----CCEecceEEEEE-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEE-eCCCCCChh-H
Confidence 1122 222222223333 3468999999999652 234678888889666555 565554333 3
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+.+.+...+.++++|+||+|+...
T Consensus 117 ~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 117 ETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34555666668899999999998854
No 213
>PRK12739 elongation factor G; Reviewed
Probab=98.87 E-value=1.1e-08 Score=112.51 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+...|+|+|..++|||||+|+|+...- ...+.. ...+ +..+.|+... +
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g------~~~~~~------~v~~------------~~~~~D~~~~--------E 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTG------KSHKIG------EVHD------------GAATMDWMEQ--------E 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCC------Cccccc------cccC------------CccccCCChh--------H
Confidence 566899999999999999999985321 100000 0000 0011111110 1
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+ ..+++.+.....+.. +...++||||||..+ +...+..++...|++|+ |+++..+...+ .
T Consensus 55 ~----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~-------------f~~e~~~al~~~D~~il-VvDa~~g~~~q-t 114 (691)
T PRK12739 55 Q----ERGITITSAATTCFW-KGHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVA-VFDAVSGVEPQ-S 114 (691)
T ss_pred h----hcCCCccceeEEEEE-CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhCeEEE-EEeCCCCCCHH-H
Confidence 1 122333333333333 456899999999754 23357788888896555 55566665433 3
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+++.+...+.+.|+++||+|+...
T Consensus 115 ~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 115 ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 35666666778999999999999853
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.86 E-value=6.8e-09 Score=98.04 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=41.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc------ccccHHHHHHHHHhCCCC-Cce
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ------DIATSDAMKLAREVDPTG-ERT 210 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~------d~~~~~~l~l~~~~d~~~-~rt 210 (467)
....++++||||..+ +...+..++..+|++|++|..... +.. .............+ .|+
T Consensus 75 ~~~~i~liDtpG~~~-------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 140 (219)
T cd01883 75 EKYRFTILDAPGHRD-------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKG-GQTREHALLARTLGVKQL 140 (219)
T ss_pred CCeEEEEEECCChHH-------------HHHHHHHHhhhCCEEEEEEECCCCccccccccc-cchHHHHHHHHHcCCCeE
Confidence 457899999999643 123344567788966665544331 111 11222222222233 678
Q ss_pred EEEeccCcccC
Q 012279 211 FGVLTKLDLMD 221 (467)
Q Consensus 211 i~VltK~D~~~ 221 (467)
++|+||+|+..
T Consensus 141 iivvNK~Dl~~ 151 (219)
T cd01883 141 IVAVNKMDDVT 151 (219)
T ss_pred EEEEEcccccc
Confidence 99999999984
No 215
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=5.5e-09 Score=93.33 Aligned_cols=157 Identities=15% Similarity=0.217 Sum_probs=94.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+||++|+.|+|||||+..+.-..|-+. ..++.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TI---------------------------------------------- 38 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTI---------------------------------------------- 38 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccc-ccccc----------------------------------------------
Confidence 4799999999999999999998886221 11100
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
| ..|-...+. + +.....+.|+||.|..+ ...++.-|.++++++|++. +.++.-+-..+-.
T Consensus 39 -G--aaF~tktv~--~-~~~~ikfeIWDTAGQER-------------y~slapMYyRgA~AAivvY-Dit~~~SF~~aK~ 98 (200)
T KOG0092|consen 39 -G--AAFLTKTVT--V-DDNTIKFEIWDTAGQER-------------YHSLAPMYYRGANAAIVVY-DITDEESFEKAKN 98 (200)
T ss_pred -c--cEEEEEEEE--e-CCcEEEEEEEEcCCccc-------------ccccccceecCCcEEEEEE-ecccHHHHHHHHH
Confidence 0 111111111 1 22345778999999866 4678899999999776664 3333222333344
Q ss_pred HHHHhCCCCCc-eE--EEeccCcccCCCCc-HHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHH
Q 012279 199 LAREVDPTGER-TF--GVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (467)
Q Consensus 199 l~~~~d~~~~r-ti--~VltK~D~~~~~~~-~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~ 263 (467)
+.+++.....+ ++ +|-||+|+.+.... +.+. .......++-|+..++..+.+++..+..+....
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea-~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEEA-QAYAESQGLLFFETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHHH-HHHHHhcCCEEEEEecccccCHHHHHHHHHHhc
Confidence 55555544333 33 48899999985432 2221 111223456788888888877766555444433
No 216
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.85 E-value=9.8e-09 Score=99.64 Aligned_cols=127 Identities=22% Similarity=0.258 Sum_probs=77.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
--|.+||-|||||||||++++..+---.++..+|-.|.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~Pn------------------------------------------ 197 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPN------------------------------------------ 197 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCc------------------------------------------
Confidence 34789999999999999999987532233445666552
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~ 196 (467)
.| .+.+ .....+++-|.||++..+..+ .-+ -.-..+.|+++..++.+|+.+..+- ..++.
T Consensus 198 LG----------vV~~--~~~~sfv~ADIPGLIEGAs~G--~GL----G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~ 259 (369)
T COG0536 198 LG----------VVRV--DGGESFVVADIPGLIEGASEG--VGL----GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDY 259 (369)
T ss_pred cc----------EEEe--cCCCcEEEecCcccccccccC--CCc----cHHHHHHHHhhheeEEEEecCcccCCCHHHHH
Confidence 12 1122 344579999999999977543 111 2224556777785554444433331 12233
Q ss_pred HHHHHHhCC-----CCCceEEEeccCcccCCCCc
Q 012279 197 MKLAREVDP-----TGERTFGVLTKLDLMDKGTN 225 (467)
Q Consensus 197 l~l~~~~d~-----~~~rti~VltK~D~~~~~~~ 225 (467)
..+..++.. ..++.++|+||+|+....+.
T Consensus 260 ~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~ 293 (369)
T COG0536 260 QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE 293 (369)
T ss_pred HHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH
Confidence 333344332 26889999999997655444
No 217
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=8.5e-09 Score=93.70 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=96.4
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 35 ~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
+..+..|++||+.++|||+++-.+....|-+ .....+.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-------~~~sTiG----------------------------------- 46 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-------SFISTIG----------------------------------- 46 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcC-------CccceEE-----------------------------------
Confidence 3467799999999999999999999877621 1111010
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
..|-... +++.+ ....|.+|||.|-.+ .+.++.+|++.+..++|++.-.+. .+-.
T Consensus 47 --------IDFk~kt--i~l~g-~~i~lQiWDtaGQer-------------f~ti~~sYyrgA~gi~LvyDitne-~Sfe 101 (207)
T KOG0078|consen 47 --------IDFKIKT--IELDG-KKIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDITNE-KSFE 101 (207)
T ss_pred --------EEEEEEE--EEeCC-eEEEEEEEEcccchh-------------HHHHHHHHHhhcCeeEEEEEccch-HHHH
Confidence 0111111 11222 335788999999755 689999999999988877655443 2222
Q ss_pred H---HHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhcc
Q 012279 195 D---AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (467)
Q Consensus 195 ~---~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~ 254 (467)
. +++..++..+.+.+.++|-||+|+.++.....+.-+.....++..|+.+++....++..
T Consensus 102 ni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 102 NIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred HHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 2 34445555566889999999999988554322222212333455677777766655543
No 218
>PRK00007 elongation factor G; Reviewed
Probab=98.84 E-value=1.3e-08 Score=111.85 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+...|+++|.+++|||||+|+|+...=-.+..|.+. + +..+.|+... +
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~------------~------------~~~~~D~~~~--------E 56 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVH------------D------------GAATMDWMEQ--------E 56 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcccccccc------------C------------CcccCCCCHH--------H
Confidence 466899999999999999999974220000000000 0 0011111111 1
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+. .+++.+.....+.. ....++||||||..+ +..-+...+...|+++++ +++..++..+ .
T Consensus 57 ~~----rg~ti~~~~~~~~~-~~~~~~liDTPG~~~-------------f~~ev~~al~~~D~~vlV-vda~~g~~~q-t 116 (693)
T PRK00007 57 QE----RGITITSAATTCFW-KDHRINIIDTPGHVD-------------FTIEVERSLRVLDGAVAV-FDAVGGVEPQ-S 116 (693)
T ss_pred Hh----CCCCEeccEEEEEE-CCeEEEEEeCCCcHH-------------HHHHHHHHHHHcCEEEEE-EECCCCcchh-h
Confidence 11 22333333333333 356899999999754 122356667788865555 4566666444 4
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+++.+...+.+.|+++||+|+.+..
T Consensus 117 ~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 117 ETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 456777777789999999999988543
No 219
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.84 E-value=4.3e-08 Score=102.85 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=75.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCc--ccChHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRR--FTDFSMVRKEIQD 113 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~i~~ 113 (467)
....+|+++|..++|||||+++|+... +..++.-+ ..+..-....+.. -.++..+.+...+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~-----------~~~~~~~~~~g~~~~~~~~a~~~D~~~e 87 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQL-----------ASLHNDSKRHGTQGEKLDLALLVDGLQA 87 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHH-----------HHHHHHHHhcCCCccccchhhhccCChH
Confidence 466799999999999999999999754 22221100 0000000000000 0001111111111
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
+.+ .+++-+.-. ..+..+..+++||||||..+ ...+++.. +..+|.++| |++++.++..
T Consensus 88 Er~------rgiTid~~~-~~~~~~~~~i~~iDTPGh~~------------f~~~~~~~-l~~aD~all-VVDa~~G~~~ 146 (474)
T PRK05124 88 ERE------QGITIDVAY-RYFSTEKRKFIIADTPGHEQ------------YTRNMATG-ASTCDLAIL-LIDARKGVLD 146 (474)
T ss_pred Hhh------cCCCeEeeE-EEeccCCcEEEEEECCCcHH------------HHHHHHHH-HhhCCEEEE-EEECCCCccc
Confidence 111 223333222 22334557899999999432 22344444 578885555 5556655432
Q ss_pred --HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 --SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 --~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+.+.++..+. -.+.|+|+||+|+.+..
T Consensus 147 qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~ 176 (474)
T PRK05124 147 QTRRHSFIATLLG--IKHLVVAVNKMDLVDYS 176 (474)
T ss_pred cchHHHHHHHHhC--CCceEEEEEeeccccch
Confidence 23444555543 24688999999998543
No 220
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.84 E-value=5.8e-09 Score=100.41 Aligned_cols=108 Identities=24% Similarity=0.326 Sum_probs=70.2
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 35 ~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
..---++++||.||+|||||||+|+|..--+.+...+|..|.
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~V-------------------------------------- 101 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPV-------------------------------------- 101 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccc--------------------------------------
Confidence 344568999999999999999999998754445555555442
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.| +...+..++.++|+||+...+..+-.. -..+...++++|.||+ |.++..+...-
T Consensus 102 ----PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIii-Vld~~~~~~~~ 157 (365)
T COG1163 102 ----PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIII-VLDVFEDPHHR 157 (365)
T ss_pred ----cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEE-EEecCCChhHH
Confidence 23 444566899999999999876543211 1335566789995555 55555543221
Q ss_pred HHHHHHHHhCCC
Q 012279 195 DAMKLAREVDPT 206 (467)
Q Consensus 195 ~~l~l~~~~d~~ 206 (467)
+ .+.+++...
T Consensus 158 ~--~i~~ELe~~ 167 (365)
T COG1163 158 D--IIERELEDV 167 (365)
T ss_pred H--HHHHHHHhc
Confidence 1 245555443
No 221
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.84 E-value=1.5e-08 Score=93.12 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|+|+|+.++|||||+++|.+..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999986654
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=98.83 E-value=1.2e-08 Score=104.98 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=43.7
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEec
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLT 215 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~Vlt 215 (467)
.+..+++||||||..+ .+.++ ..-+..+|.++| |+++..+...+ ..+.+..+...+.+.+ +|+|
T Consensus 72 ~~~~~i~~iDtPGh~~------------f~~~~-~~~~~~aD~~ll-Vvda~~g~~~q-t~e~l~~~~~~gi~~iivvvN 136 (396)
T PRK12735 72 TANRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAIL-VVSAADGPMPQ-TREHILLARQVGVPYIVVFLN 136 (396)
T ss_pred CCCcEEEEEECCCHHH------------HHHHH-HhhhccCCEEEE-EEECCCCCchh-HHHHHHHHHHcCCCeEEEEEE
Confidence 3456899999999632 22333 344667885555 55565544333 2334445555677765 5799
Q ss_pred cCcccCC
Q 012279 216 KLDLMDK 222 (467)
Q Consensus 216 K~D~~~~ 222 (467)
|+|+.+.
T Consensus 137 K~Dl~~~ 143 (396)
T PRK12735 137 KCDMVDD 143 (396)
T ss_pred ecCCcch
Confidence 9999853
No 223
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.82 E-value=1.2e-08 Score=105.18 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---ccHHHHHHHHHhCCCCCceEEEec
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~Vlt 215 (467)
...++|+||||..+ +......++..+|.++|+| +++... .+.+.+.++..+. ..+.++|+|
T Consensus 79 ~~~i~liDtPGh~~-------------f~~~~~~g~~~aD~aIlVV-Da~~g~~~~qt~e~l~~l~~~g--i~~iIVvvN 142 (406)
T TIGR03680 79 LRRVSFVDAPGHET-------------LMATMLSGAALMDGALLVI-AANEPCPQPQTKEHLMALEIIG--IKNIVIVQN 142 (406)
T ss_pred ccEEEEEECCCHHH-------------HHHHHHHHHHHCCEEEEEE-ECCCCccccchHHHHHHHHHcC--CCeEEEEEE
Confidence 35789999999633 2333455566788665554 555432 1233343333221 256899999
Q ss_pred cCcccCC
Q 012279 216 KLDLMDK 222 (467)
Q Consensus 216 K~D~~~~ 222 (467)
|+|+.+.
T Consensus 143 K~Dl~~~ 149 (406)
T TIGR03680 143 KIDLVSK 149 (406)
T ss_pred ccccCCH
Confidence 9999864
No 224
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.6e-08 Score=90.77 Aligned_cols=153 Identities=15% Similarity=0.230 Sum_probs=92.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..+.+|+|+|+.|+|||-|+-.+.+-.| |-...
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~---------------------------------------------- 39 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTF-TESYI---------------------------------------------- 39 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCc-chhhc----------------------------------------------
Confidence 4678999999999999999999999876 21111
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.+-++.-....+++.+.. ..|.++||.|--+ ++.++.+|.++++.||++.+-... .+=..
T Consensus 40 -----sTIGVDf~~rt~e~~gk~-iKlQIWDTAGQER-------------Frtit~syYR~ahGii~vyDiT~~-~SF~~ 99 (205)
T KOG0084|consen 40 -----STIGVDFKIRTVELDGKT-IKLQIWDTAGQER-------------FRTITSSYYRGAHGIIFVYDITKQ-ESFNN 99 (205)
T ss_pred -----ceeeeEEEEEEeeecceE-EEEEeeeccccHH-------------HhhhhHhhccCCCeEEEEEEcccH-HHhhh
Confidence 111122222233444443 4899999999643 789999999999987776533221 11111
Q ss_pred HHHHHHHhC---CCCCceEEEeccCcccCCCCcHHHHhcCcccccCCC-eEEEEeCChhhhccC
Q 012279 196 AMKLAREVD---PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRN 255 (467)
Q Consensus 196 ~l~l~~~~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg-~~~V~~~s~~~~~~~ 255 (467)
..++..+++ ....+.+.|-||+|+.+......+..+.....+..+ |...++.++.++++.
T Consensus 100 v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 100 VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence 223444444 345789999999999876532222221112333344 555555555444433
No 225
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.82 E-value=1.6e-08 Score=104.33 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=48.0
Q ss_pred cCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--HHHHHHHH
Q 012279 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLARE 202 (467)
Q Consensus 125 ~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~ 202 (467)
++.+....... .+...++||||||..+ .+.++. .-+..+|.++| |+++..++..+ +.+.+++.
T Consensus 66 iTid~~~~~~~-~~~~~~~liDtPGh~~------------f~~~~~-~~~~~aD~all-VVda~~G~~~qt~~~~~~~~~ 130 (406)
T TIGR02034 66 ITIDVAYRYFS-TDKRKFIVADTPGHEQ------------YTRNMA-TGASTADLAVL-LVDARKGVLEQTRRHSYIASL 130 (406)
T ss_pred cCeEeeeEEEc-cCCeEEEEEeCCCHHH------------HHHHHH-HHHhhCCEEEE-EEECCCCCccccHHHHHHHHH
Confidence 44443333333 3456899999999543 123333 34678886555 45566554333 33445554
Q ss_pred hCCCCCceEEEeccCcccCCC
Q 012279 203 VDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 203 ~d~~~~rti~VltK~D~~~~~ 223 (467)
+. ..+.|+|+||+|+.+..
T Consensus 131 ~~--~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 131 LG--IRHVVLAVNKMDLVDYD 149 (406)
T ss_pred cC--CCcEEEEEEecccccch
Confidence 43 24688899999998543
No 226
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.82 E-value=1.6e-08 Score=110.23 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=42.7
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--HHHHHHHHHhCCCCCceEEEe
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVL 214 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~Vl 214 (467)
.+..+++||||||..+ ...++. ..+..+|.++| |++++.++.. .+.+.++..+. -.+.|+|+
T Consensus 101 ~~~~~~~liDtPG~~~------------f~~~~~-~~~~~aD~~ll-Vvda~~g~~~~t~e~~~~~~~~~--~~~iivvv 164 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ------------YTRNMV-TGASTADLAII-LVDARKGVLTQTRRHSFIASLLG--IRHVVLAV 164 (632)
T ss_pred cCCceEEEEECCChHH------------HHHHHH-HHHHhCCEEEE-EEECCCCccccCHHHHHHHHHhC--CCeEEEEE
Confidence 4456899999999632 123333 34678885554 5566554422 23444554442 15688899
Q ss_pred ccCcccC
Q 012279 215 TKLDLMD 221 (467)
Q Consensus 215 tK~D~~~ 221 (467)
||+|+.+
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999985
No 227
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.81 E-value=1.3e-08 Score=109.08 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
+...++||||||..+ +...+..+++.+|+++|+|. +..+...+ ...+++.+...+.|.|+|+||+
T Consensus 62 ~~~kinlIDTPGh~D-------------F~~ev~~~l~~aD~alLVVD-a~~G~~~q-T~~~l~~a~~~~ip~IVviNKi 126 (594)
T TIGR01394 62 NGTKINIVDTPGHAD-------------FGGEVERVLGMVDGVLLLVD-ASEGPMPQ-TRFVLKKALELGLKPIVVINKI 126 (594)
T ss_pred CCEEEEEEECCCHHH-------------HHHHHHHHHHhCCEEEEEEe-CCCCCcHH-HHHHHHHHHHCCCCEEEEEECC
Confidence 347899999999754 34567888999997776654 54444332 2234444445678999999999
Q ss_pred cccCC
Q 012279 218 DLMDK 222 (467)
Q Consensus 218 D~~~~ 222 (467)
|+.+.
T Consensus 127 D~~~a 131 (594)
T TIGR01394 127 DRPSA 131 (594)
T ss_pred CCCCc
Confidence 98643
No 228
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.81 E-value=3.4e-08 Score=92.81 Aligned_cols=119 Identities=23% Similarity=0.341 Sum_probs=79.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccc--cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-+|+|+|+.|||||||+++|.+..+ +.+..+ .+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 5899999999999999999999876 322221 222221000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---cc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---AT 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---~~ 193 (467)
........+.++||+|... ++.+...|...++++++++....... ..
T Consensus 48 -----------------~~~~~~~~~~~~Dt~gq~~-------------~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 48 -----------------EPYRRNIKLQLWDTAGQEE-------------YRSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred -----------------EeCCCEEEEEeecCCCHHH-------------HHHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 1111134688999999765 67889999999998888776654211 12
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCCc
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN 225 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 225 (467)
......++...+...+++.|.||+|+......
T Consensus 98 ~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred HHHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 22233444444456899999999999876543
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.80 E-value=9.9e-09 Score=105.52 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=71.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
--.|+++|..++|||||+++|++.- ...+.+.. ..+ + +.+.. ..++
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~----------------~~~--~-------------~~d~~--~~E~ 57 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAA----------------RAY--D-------------QIDNA--PEEK 57 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhH-HHhhcccc----------------ccc--c-------------cccCC--HHHH
Confidence 3469999999999999999999652 11111000 000 0 00000 0111
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
..| ++.+...+.... ...+++||||||..+ .+.++ ...+..+|.++| |+++..+... ...
T Consensus 58 ~rG----~Ti~~~~~~~~~-~~~~~~liDtpGh~~------------f~~~~-~~~~~~~D~~il-Vvda~~g~~~-qt~ 117 (394)
T TIGR00485 58 ARG----ITINTAHVEYET-ENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAIL-VVSATDGPMP-QTR 117 (394)
T ss_pred hcC----cceeeEEEEEcC-CCEEEEEEECCchHH------------HHHHH-HHHHhhCCEEEE-EEECCCCCcH-HHH
Confidence 123 333333333332 346799999999743 12233 334567786655 4556554422 333
Q ss_pred HHHHHhCCCCCceE-EEeccCcccCC
Q 012279 198 KLAREVDPTGERTF-GVLTKLDLMDK 222 (467)
Q Consensus 198 ~l~~~~d~~~~rti-~VltK~D~~~~ 222 (467)
+.+..+...+.+.+ +|+||+|+.+.
T Consensus 118 e~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 118 EHILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHcCCCEEEEEEEecccCCH
Confidence 44444555567755 68999999864
No 230
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.80 E-value=1.6e-08 Score=98.69 Aligned_cols=140 Identities=22% Similarity=0.353 Sum_probs=73.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
.|.|||..|+|||||+|+|++..+.+......+... ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~------------------------------------------~~ 43 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA------------------------------------------SI 43 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc------------------------------------------cc
Confidence 689999999999999999999887554311110000 00
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCcccc-CCCCccHHHHHHHHHHHhhcC-------------CCeEEEEEe
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAV-EGQPDTIVEDIESMVRSYVEK-------------PNSVILAIS 185 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~-~~q~~~~~~~i~~~~~~yi~~-------------~~~iIL~V~ 185 (467)
..+..+......+. .+....+|++|||||+.+.-. ......+.+.+.+.-..|+.+ .|+++.++.
T Consensus 44 ~~~~~i~~~~~~l~-e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 44 SRTLEIEERTVELE-ENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp -SCEEEEEEEEEEE-ETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred ccccceeeEEEEec-cCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 00001111111111 111235899999999976321 111223334444444455431 135555555
Q ss_pred cCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 186 PANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 186 ~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
|....+. ...++.++++.. ..++|-||.|+|.+.+.+
T Consensus 123 pt~~~L~-~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 123 PTGHGLK-PLDIEFMKRLSK-RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp TTSSSS--HHHHHHHHHHTT-TSEEEEEESTGGGS-HHH
T ss_pred CCCccch-HHHHHHHHHhcc-cccEEeEEecccccCHHH
Confidence 5555564 445568888876 488999999999987543
No 231
>PRK12736 elongation factor Tu; Reviewed
Probab=98.80 E-value=1.5e-08 Score=104.07 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=43.1
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEecc
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK 216 (467)
+..+++||||||..+ .+.++ ..-+..+|+++| |+++..++..+ ....+..+...+.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~-~~~~~~~d~~ll-Vvd~~~g~~~~-t~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAIL-VVAATDGPMPQ-TREHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEE-EEECCCCCchh-HHHHHHHHHHcCCCEEEEEEEe
Confidence 456899999999532 22333 333467786555 55566554332 33444445555777 5788999
Q ss_pred CcccCC
Q 012279 217 LDLMDK 222 (467)
Q Consensus 217 ~D~~~~ 222 (467)
+|+.+.
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999753
No 232
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.79 E-value=3.4e-08 Score=91.54 Aligned_cols=67 Identities=25% Similarity=0.144 Sum_probs=40.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--HHHHHHHHhCCCCCceEEEec
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DAMKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~Vlt 215 (467)
...+.|+||+|... .+...|++++|++|++....+.+ +.+- .++..++...+ ..++++|.|
T Consensus 65 ~v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgN 128 (195)
T cd01873 65 SVSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGC 128 (195)
T ss_pred EEEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 35789999999743 12334788999766665543321 1111 12223333333 578999999
Q ss_pred cCcccC
Q 012279 216 KLDLMD 221 (467)
Q Consensus 216 K~D~~~ 221 (467)
|+|+.+
T Consensus 129 K~DL~~ 134 (195)
T cd01873 129 KLDLRY 134 (195)
T ss_pred chhccc
Confidence 999864
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.78 E-value=4.2e-08 Score=103.95 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
+...+++|||||..+ +...+..++..+|++|+++ ++..+...+ ...+.+.....+.|+++++||+
T Consensus 77 ~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVv-Da~~gv~~~-t~~l~~~~~~~~iPiiv~iNK~ 141 (526)
T PRK00741 77 RDCLINLLDTPGHED-------------FSEDTYRTLTAVDSALMVI-DAAKGVEPQ-TRKLMEVCRLRDTPIFTFINKL 141 (526)
T ss_pred CCEEEEEEECCCchh-------------hHHHHHHHHHHCCEEEEEE-ecCCCCCHH-HHHHHHHHHhcCCCEEEEEECC
Confidence 346799999999754 3445677888999776665 454444332 3345555556689999999999
Q ss_pred cccCC
Q 012279 218 DLMDK 222 (467)
Q Consensus 218 D~~~~ 222 (467)
|+...
T Consensus 142 D~~~a 146 (526)
T PRK00741 142 DRDGR 146 (526)
T ss_pred ccccc
Confidence 98653
No 234
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.78 E-value=2.7e-08 Score=103.40 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cc--cHHHHHHHHHhCCCCCceEEE
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IA--TSDAMKLAREVDPTGERTFGV 213 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d--~~--~~~~l~l~~~~d~~~~rti~V 213 (467)
+...++|+||||..+ +......++..+|++||++...+.. .. +...+.+++.+. ..++|+|
T Consensus 83 ~~~~i~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD-------------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH-------------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEEE
Confidence 346899999999532 2233344567889766665543321 21 122233444332 2578899
Q ss_pred eccCcccC
Q 012279 214 LTKLDLMD 221 (467)
Q Consensus 214 ltK~D~~~ 221 (467)
+||+|+.+
T Consensus 148 iNK~Dl~~ 155 (426)
T TIGR00483 148 INKMDSVN 155 (426)
T ss_pred EEChhccC
Confidence 99999975
No 235
>PRK10218 GTP-binding protein; Provisional
Probab=98.78 E-value=4.6e-08 Score=104.97 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
+...+.||||||..+ +...+..+++.+|++|++|. +..+...+. ...++.+...+.+.++|+||+
T Consensus 66 ~~~~inliDTPG~~d-------------f~~~v~~~l~~aDg~ILVVD-a~~G~~~qt-~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 66 NDYRINIVDTPGHAD-------------FGGEVERVMSMVDSVLLVVD-AFDGPMPQT-RFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred CCEEEEEEECCCcch-------------hHHHHHHHHHhCCEEEEEEe-cccCccHHH-HHHHHHHHHcCCCEEEEEECc
Confidence 457899999999765 34557788999997766654 544433332 223444444678999999999
Q ss_pred cccCC
Q 012279 218 DLMDK 222 (467)
Q Consensus 218 D~~~~ 222 (467)
|+...
T Consensus 131 D~~~a 135 (607)
T PRK10218 131 DRPGA 135 (607)
T ss_pred CCCCC
Confidence 98643
No 236
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.77 E-value=8.4e-08 Score=96.09 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=83.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh-
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV- 118 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~- 118 (467)
.|+|||+-++|||||+|++++.-++|.=...--| +...+.+
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k--------------------------------------~Ra~DELp 60 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDK--------------------------------------ERAQDELP 60 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHH--------------------------------------hHHHhccC
Confidence 6999999999999999999999666632211000 0001111
Q ss_pred ---cCCC------CCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHH----------------HHHHHHHHHh
Q 012279 119 ---TGKT------KQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV----------------EDIESMVRSY 173 (467)
Q Consensus 119 ---~g~~------~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~----------------~~i~~~~~~y 173 (467)
.|++ +-+-.+.+.+.....-..++.||||+|+.....-|.-+... +..+-=+++-
T Consensus 61 qs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kV 140 (492)
T TIGR02836 61 QSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKV 140 (492)
T ss_pred cCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHH
Confidence 1210 11223444554444444689999999998754433221111 1111126677
Q ss_pred hc-CCCeEEEEEe-cCC------cccccHHHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 174 VE-KPNSVILAIS-PAN------QDIATSDAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 174 i~-~~~~iIL~V~-~a~------~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
|. +++ |-++|+ +++ .++ .....++..++...+.|.++|+||.|-..
T Consensus 141 I~dhst-IgivVtTDgsi~dI~Re~y-~~aEe~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 141 IQEHST-IGVVVTTDGTITDIPREDY-VEAEERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred HHhcCc-EEEEEEcCCCccccccccc-hHHHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 87 666 444544 653 122 23345677888888999999999999543
No 237
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.77 E-value=2.4e-08 Score=90.46 Aligned_cols=118 Identities=20% Similarity=0.387 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+.|.|+++|+.+||||+|+..|+.....+ ++|...-.+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~~------------------------------------ 41 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIAY------------------------------------ 41 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCceE------------------------------------
Confidence 46889999999999999999999775422 22222110000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH--hhcCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS--YVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~--yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.+..+....+.+||+||..+.. ..+... |+..+.+||++|+++...-.-.
T Consensus 42 ----------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~ 93 (181)
T PF09439_consen 42 ----------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELR 93 (181)
T ss_dssp ----------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHH
T ss_pred ----------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHH
Confidence 0122345688999999988743 223333 6888888877776653211111
Q ss_pred HHHH----H--HHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMK----L--AREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~----l--~~~~d~~~~rti~VltK~D~~~~ 222 (467)
++.+ + .....+.+.|++++.||.|+...
T Consensus 94 ~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 94 DVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1111 1 12334678999999999998754
No 238
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.76 E-value=6.8e-09 Score=87.73 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|+|+|+.++|||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 239
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.76 E-value=2.4e-07 Score=87.04 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=53.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHH---HhCCCCCceEEEec
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAR---EVDPTGERTFGVLT 215 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~---~~d~~~~rti~Vlt 215 (467)
...+.++||||..+ ...+...|+...+++|+++ +.+...+-.....+.. ... ...++++|.|
T Consensus 57 ~i~i~~~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~n 121 (215)
T PTZ00132 57 PICFNVWDTAGQEK-------------FGGLRDGYYIKGQCAIIMF-DVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGN 121 (215)
T ss_pred EEEEEEEECCCchh-------------hhhhhHHHhccCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 35788999999543 2445667888888666655 4433221111111222 222 3478889999
Q ss_pred cCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhcc
Q 012279 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (467)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~ 254 (467)
|+|+.+..... +... ........|+.+++.++.+++.
T Consensus 122 K~Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 122 KVDVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred CccCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHH
Confidence 99986532211 1111 1112234566777766655543
No 240
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.76 E-value=3.6e-08 Score=93.47 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=44.0
Q ss_pred ecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEE
Q 012279 135 YSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGV 213 (467)
Q Consensus 135 ~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~V 213 (467)
..+....++++||||.. .. +...++.+| ++++|+++..++..++ ..+...+...+.+ +++|
T Consensus 78 ~~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aD-vVllviDa~~~~~~~~-~~i~~~l~~~g~p~vi~V 139 (225)
T cd01882 78 VTGKKRRLTFIECPNDI---------------NA-MIDIAKVAD-LVLLLIDASFGFEMET-FEFLNILQVHGFPRVMGV 139 (225)
T ss_pred EecCCceEEEEeCCchH---------------HH-HHHHHHhcC-EEEEEEecCcCCCHHH-HHHHHHHHHcCCCeEEEE
Confidence 33456789999999842 11 223356778 4555666666554333 3455555555666 4569
Q ss_pred eccCcccCCC
Q 012279 214 LTKLDLMDKG 223 (467)
Q Consensus 214 ltK~D~~~~~ 223 (467)
+||+|+.++.
T Consensus 140 vnK~D~~~~~ 149 (225)
T cd01882 140 LTHLDLFKKN 149 (225)
T ss_pred EeccccCCcH
Confidence 9999998543
No 241
>PRK00049 elongation factor Tu; Reviewed
Probab=98.75 E-value=2.3e-08 Score=102.72 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=44.0
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEec
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLT 215 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~Vlt 215 (467)
.+..+++||||||..+ .+.++ ...+..+|.+++ |+++..... .....++..+...+.+.+ +|+|
T Consensus 72 ~~~~~i~~iDtPG~~~------------f~~~~-~~~~~~aD~~ll-VVDa~~g~~-~qt~~~~~~~~~~g~p~iiVvvN 136 (396)
T PRK00049 72 TEKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAIL-VVSAADGPM-PQTREHILLARQVGVPYIVVFLN 136 (396)
T ss_pred CCCeEEEEEECCCHHH------------HHHHH-HhhhccCCEEEE-EEECCCCCc-hHHHHHHHHHHHcCCCEEEEEEe
Confidence 3456899999999742 22333 344678886555 555655442 333334455555577865 5899
Q ss_pred cCcccC
Q 012279 216 KLDLMD 221 (467)
Q Consensus 216 K~D~~~ 221 (467)
|+|+.+
T Consensus 137 K~D~~~ 142 (396)
T PRK00049 137 KCDMVD 142 (396)
T ss_pred ecCCcc
Confidence 999985
No 242
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.75 E-value=5.3e-08 Score=103.20 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=47.4
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEecc
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
.+...+.|+||||..+ +...+..++..+|++|++|. +...+..+ ...+.+.....+.|+++|+||
T Consensus 77 ~~~~~inliDTPG~~d-------------f~~~~~~~l~~aD~aIlVvD-a~~gv~~~-t~~l~~~~~~~~~PiivviNK 141 (527)
T TIGR00503 77 YRDCLVNLLDTPGHED-------------FSEDTYRTLTAVDNCLMVID-AAKGVETR-TRKLMEVTRLRDTPIFTFMNK 141 (527)
T ss_pred eCCeEEEEEECCChhh-------------HHHHHHHHHHhCCEEEEEEE-CCCCCCHH-HHHHHHHHHhcCCCEEEEEEC
Confidence 3457899999999853 34456778889997776655 44444322 223444444467899999999
Q ss_pred CcccC
Q 012279 217 LDLMD 221 (467)
Q Consensus 217 ~D~~~ 221 (467)
+|+..
T Consensus 142 iD~~~ 146 (527)
T TIGR00503 142 LDRDI 146 (527)
T ss_pred ccccC
Confidence 99864
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.72 E-value=2.5e-07 Score=82.44 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=84.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..-++|+|+|.+++||+|++.+++-... ++-.+..+..- +.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s--------------~k------------------------ 48 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVS--------------GK------------------------ 48 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeeccccccc--------------cc------------------------
Confidence 3567899999999999999999998752 22111111100 00
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
......++.+.-.+++ .....+.|+||||..+ ++-|..-+.+.+..+|++|..+. +. +..
T Consensus 49 ---~kr~tTva~D~g~~~~--~~~~~v~LfgtPGq~R-------------F~fm~~~l~~ga~gaivlVDss~-~~-~~~ 108 (187)
T COG2229 49 ---GKRPTTVAMDFGSIEL--DEDTGVHLFGTPGQER-------------FKFMWEILSRGAVGAIVLVDSSR-PI-TFH 108 (187)
T ss_pred ---cccceeEeecccceEE--cCcceEEEecCCCcHH-------------HHHHHHHHhCCcceEEEEEecCC-Cc-chH
Confidence 0000112222222222 2335789999999866 57778888888887777775433 22 335
Q ss_pred HHHHHHHhCCCC-CceEEEeccCcccCCCC--cHHHHhc
Q 012279 196 AMKLAREVDPTG-ERTFGVLTKLDLMDKGT--NALDVLE 231 (467)
Q Consensus 196 ~l~l~~~~d~~~-~rti~VltK~D~~~~~~--~~~~~l~ 231 (467)
+..+...+.... .|.++++||.|+-+... ...+++.
T Consensus 109 a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 109 AEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK 147 (187)
T ss_pred HHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH
Confidence 566666665554 89999999999986533 3444443
No 244
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.72 E-value=7.5e-08 Score=90.95 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=82.7
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 34 ~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
.....|++++.|..|+|||||||.++..... ...+-. .
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~-~~t~k~--K--------------------------------------- 169 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNI-ADTSKS--K--------------------------------------- 169 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhh-hhhcCC--C---------------------------------------
Confidence 3457799999999999999999999986641 111000 0
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeE--EEEEecCCccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSV--ILAISPANQDI 191 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~i--IL~V~~a~~d~ 191 (467)
.|.+.. +..+ .-...+++||+||+.....+ .+..+...+++..|+.+-+.+ +++.+++...+
T Consensus 170 -----~g~Tq~-------in~f-~v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i 233 (320)
T KOG2486|consen 170 -----NGKTQA-------INHF-HVGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVDASVPI 233 (320)
T ss_pred -----Ccccee-------eeee-eccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC
Confidence 111111 1111 12358899999996654332 222334678899997654422 23344566666
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 192 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..-|.. .+..+...+.+..+|+||+|.+...
T Consensus 234 ~~~D~~-~i~~~ge~~VP~t~vfTK~DK~k~~ 264 (320)
T KOG2486|consen 234 QPTDNP-EIAWLGENNVPMTSVFTKCDKQKKV 264 (320)
T ss_pred CCCChH-HHHHHhhcCCCeEEeeehhhhhhhc
Confidence 555544 5666777899999999999988643
No 245
>PLN03126 Elongation factor Tu; Provisional
Probab=98.71 E-value=5.4e-08 Score=101.84 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
....|+++|..++|||||+++|++..- .+..+.+- .+ .+.|.. ..+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~------------~~---------~~~D~~--------~~E 125 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPK------------KY---------DEIDAA--------PEE 125 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhh-----hhcccccc------------cc---------ccccCC--------hhH
Confidence 344689999999999999999997531 11111110 00 000000 011
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+..| ++.+....... .+...++|||+||..+ .+.++ ..-+..+|.++| |+++..+...+ .
T Consensus 126 r~rG----iTi~~~~~~~~-~~~~~i~liDtPGh~~------------f~~~~-~~g~~~aD~ail-VVda~~G~~~q-t 185 (478)
T PLN03126 126 RARG----ITINTATVEYE-TENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAIL-VVSGADGPMPQ-T 185 (478)
T ss_pred HhCC----eeEEEEEEEEe-cCCcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEE-EEECCCCCcHH-H
Confidence 1112 33232222222 3456899999999643 23333 344567886655 45566554333 3
Q ss_pred HHHHHHhCCCCCc-eEEEeccCcccCC
Q 012279 197 MKLAREVDPTGER-TFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~r-ti~VltK~D~~~~ 222 (467)
.+.+..+...+.+ .|+|+||+|+.+.
T Consensus 186 ~e~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 186 KEHILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHHcCCCeEEEEEecccccCH
Confidence 3344455555776 7789999999863
No 246
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.70 E-value=6.2e-08 Score=106.82 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEecc
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
....+++||||||..+. ...+..++..+|++|+++ ++..++.. ....+.+.+...+.+.++|+||
T Consensus 83 ~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVv-da~~g~~~-~t~~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVV-CAVEGVMP-QTETVLRQALKENVKPVLFINK 147 (720)
T ss_pred CCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEE-ecCCCCCc-cHHHHHHHHHHcCCCEEEEEEC
Confidence 44578999999998752 344678889999766655 45554422 2333455554556788999999
Q ss_pred CcccC
Q 012279 217 LDLMD 221 (467)
Q Consensus 217 ~D~~~ 221 (467)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99863
No 247
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.69 E-value=1.2e-07 Score=84.85 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+|+++|+.++|||||+..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 689999999999999999887765
No 248
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.67 E-value=3.2e-08 Score=82.24 Aligned_cols=104 Identities=24% Similarity=0.295 Sum_probs=67.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|++||..++||+||.++|-|.+.+++.+..++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve---------------------------------------------- 35 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVE---------------------------------------------- 35 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccceee----------------------------------------------
Confidence 3699999999999999999999998776654321
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 198 (467)
..++ -.|||||-+-.. ........-..++.+ +|..|..+|...+.-
T Consensus 36 ---------------~~d~-----~~IDTPGEy~~~---------~~~Y~aL~tt~~dad-vi~~v~~and~~s~f---- 81 (148)
T COG4917 36 ---------------FNDK-----GDIDTPGEYFEH---------PRWYHALITTLQDAD-VIIYVHAANDPESRF---- 81 (148)
T ss_pred ---------------ccCc-----cccCCchhhhhh---------hHHHHHHHHHhhccc-eeeeeecccCccccC----
Confidence 1111 258999976521 011122223345666 666677777543221
Q ss_pred HHHHhCCCCCceEEEeccCcccCC
Q 012279 199 LAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 199 l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
-....++...++|||+||+|+.+.
T Consensus 82 ~p~f~~~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 82 PPGFLDIGVKKVIGVVTKADLAED 105 (148)
T ss_pred CcccccccccceEEEEecccccch
Confidence 122345556779999999999963
No 249
>PRK13351 elongation factor G; Reviewed
Probab=98.66 E-value=6.9e-08 Score=106.31 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
....++||||||..+ +...+..+++..|++|+++ ++..+.. .....+.+.+...+.|.++|+||+
T Consensus 71 ~~~~i~liDtPG~~d-------------f~~~~~~~l~~aD~~ilVv-d~~~~~~-~~~~~~~~~~~~~~~p~iiviNK~ 135 (687)
T PRK13351 71 DNHRINLIDTPGHID-------------FTGEVERSLRVLDGAVVVF-DAVTGVQ-PQTETVWRQADRYGIPRLIFINKM 135 (687)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHhCCEEEEEE-eCCCCCC-HHHHHHHHHHHhcCCCEEEEEECC
Confidence 356899999999854 3556788899999766655 4554432 223344555666688999999999
Q ss_pred cccCC
Q 012279 218 DLMDK 222 (467)
Q Consensus 218 D~~~~ 222 (467)
|+...
T Consensus 136 D~~~~ 140 (687)
T PRK13351 136 DRVGA 140 (687)
T ss_pred CCCCC
Confidence 98753
No 250
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.66 E-value=1.1e-07 Score=98.18 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=21.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-.|+++|..++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 46999999999999999999875
No 251
>PLN00023 GTP-binding protein; Provisional
Probab=98.65 E-value=1.3e-07 Score=93.12 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC--------------
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP-------------- 205 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~-------------- 205 (467)
..+.|+||+|-.+ .+.+...|+++++++|++....+.. .-.....++..+..
T Consensus 83 v~LqIWDTAGqEr-------------frsL~~~yyr~AdgiILVyDITdr~-SFenL~kWl~eI~~~~~~s~p~~s~~~~ 148 (334)
T PLN00023 83 FFVELWDVSGHER-------------YKDCRSLFYSQINGVIFVHDLSQRR-TKTSLQKWASEVAATGTFSAPLGSGGPG 148 (334)
T ss_pred EEEEEEECCCChh-------------hhhhhHHhccCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhccccccccccccc
Confidence 4588999999654 4678889999999877776544322 11111223333321
Q ss_pred -CCCceEEEeccCcccCC
Q 012279 206 -TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 206 -~~~rti~VltK~D~~~~ 222 (467)
...++++|.||+|+.+.
T Consensus 149 ~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 149 GLPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCCcEEEEEECcccccc
Confidence 13689999999999754
No 252
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.2e-07 Score=80.88 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=80.1
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|.|+|+.|+||+|++-+..|..|-|. .++..-+.
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~a---fvsTvGid----------------------------------------- 57 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTVGID----------------------------------------- 57 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccc---eeeeeeee-----------------------------------------
Confidence 4799999999999999999999988441 11111110
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~ 196 (467)
|.-+.+ ..+.....+.++||.|... .+.++..|++.+.++||+....|..- +-++.
T Consensus 58 ------FKvKTv---yr~~kRiklQiwDTagqEr-------------yrtiTTayyRgamgfiLmyDitNeeSf~svqdw 115 (193)
T KOG0093|consen 58 ------FKVKTV---YRSDKRIKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESFNSVQDW 115 (193)
T ss_pred ------EEEeEe---eecccEEEEEEEecccchh-------------hhHHHHHHhhccceEEEEEecCCHHHHHHHHHH
Confidence 111100 1222346889999999755 57889999999999999987665421 11222
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.-..+.+.-...++|+|.||+|+-++.
T Consensus 116 ~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 116 ITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HHHheeeeccCceEEEEecccCCccce
Confidence 233444445678999999999987654
No 253
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.62 E-value=1.7e-07 Score=103.70 Aligned_cols=133 Identities=15% Similarity=0.282 Sum_probs=75.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
....|+|+|..++|||||+++|+... |..++.- .+ ...+.|+... +.+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~g------------~~~~~D~~~~------E~~ 66 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------AG------------EQLALDFDEE------EQA 66 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------cC------------cceecCccHH------HHH
Confidence 56689999999999999999998543 2222210 00 0011122111 111
Q ss_pred hhcCCCCCcCCCcEEEEe-ecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 117 RVTGKTKQISPIPIHLSI-YSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i-~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.|. .+....+.+.. .......++||||||..+ +...+...+...|++|++| ++..++..+
T Consensus 67 --rgi--Ti~~~~~~~~~~~~~~~~~i~liDtPG~~d-------------f~~~~~~~l~~~D~avlVv-da~~g~~~~- 127 (731)
T PRK07560 67 --RGI--TIKAANVSMVHEYEGKEYLINLIDTPGHVD-------------FGGDVTRAMRAVDGAIVVV-DAVEGVMPQ- 127 (731)
T ss_pred --hhh--hhhccceEEEEEecCCcEEEEEEcCCCccC-------------hHHHHHHHHHhcCEEEEEE-ECCCCCCcc-
Confidence 121 11122222222 122346789999999876 2345677788889766655 455554333
Q ss_pred HHHHHHHhCCCCCceEEEeccCccc
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
...+.+.+...+.+.|+++||+|+.
T Consensus 128 t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 128 TETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHHcCCCeEEEEECchhh
Confidence 3334444444467889999999976
No 254
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=100.12 Aligned_cols=321 Identities=26% Similarity=0.278 Sum_probs=231.5
Q ss_pred hHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH
Q 012279 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM 169 (467)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~ 169 (467)
+..+.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...++..+......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (546)
T COG0699 3 EFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELL 82 (546)
T ss_pred cchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHH
Confidence 45566777777889999999999999888888889999999999999999999999999999998888888887777788
Q ss_pred HHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCCh
Q 012279 170 VRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ 249 (467)
Q Consensus 170 ~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~ 249 (467)
-..++...+++|.....++.+.++......++..++ +.++.+.++.+...... .+.++..+.+...
T Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 148 (546)
T COG0699 83 DLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALE 148 (546)
T ss_pred HhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchh
Confidence 888899889999999988888888888878777765 77888877766542211 4567777777777
Q ss_pred hhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 012279 250 ADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIA 329 (467)
Q Consensus 250 ~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~lg~~~~ 329 (467)
.++........+...+..+|..++.+.+....++...+...+...+..++....|............ .++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 220 (546)
T COG0699 149 TDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN-- 220 (546)
T ss_pred HHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch--
Confidence 7777778888888888999999999988888889999999999999998888777654444333322 22211
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchhhhcchhhHHHhccCCccccCCHHHHHHHHHhhCCCCCcccCChH
Q 012279 330 VDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQ 409 (467)
Q Consensus 330 ~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~~~~ri~~~f~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~g~~p~~~~pe~ 409 (467)
.+......|...+.....|.+ .... ..............+....-++.+.+|..+....
T Consensus 221 --------~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (546)
T COG0699 221 --------EVLAVIQTLLKRLSELVRGAR-----IRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLT 279 (546)
T ss_pred --------HHHHHHHHHHHHHHHHhccch-----hhhh--------hcccchHHHhhhhhhHHHHHcccCCCcccccccc
Confidence 133444445454443333332 2211 1111111123334455566677788887777888
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 012279 410 GYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQVELY 453 (467)
Q Consensus 410 ~f~~li~~~i~~~~~P~~~~~~~v~~~l~~~v~~~~~~~~~~~~ 453 (467)
++...+..++..+..++.+|+..+...+..+............|
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (546)
T COG0699 280 LLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPF 323 (546)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999888888888777777776664444343333333
No 255
>PTZ00416 elongation factor 2; Provisional
Probab=98.61 E-value=1.2e-07 Score=106.14 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=48.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
..++|+||||..+ +..-+...++..|++|+ |+++..++..+. ..+.+.+...+.+.|+|+||+|+
T Consensus 92 ~~i~liDtPG~~~-------------f~~~~~~al~~~D~ail-Vvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVD-------------FSSEVTAALRVTDGALV-VVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHh-------------HHHHHHHHHhcCCeEEE-EEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhh
Confidence 4689999999865 22335666788896665 455666665444 34667777778899999999998
Q ss_pred c
Q 012279 220 M 220 (467)
Q Consensus 220 ~ 220 (467)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 256
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.60 E-value=7.3e-08 Score=87.38 Aligned_cols=31 Identities=32% Similarity=0.325 Sum_probs=26.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccc
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~ 68 (467)
..+++|+|.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 3589999999999999999999987645443
No 257
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=6.8e-08 Score=86.22 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=24.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCccc
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~ 67 (467)
..|+++|.+|+|||||+|+|.|....+.+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~ 131 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVA 131 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeC
Confidence 46889999999999999999998764443
No 258
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.59 E-value=3e-07 Score=103.04 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...++||||||..+ +..-+...++-+|++|++|. |..++..+. ..+.+.+...+.++|+++||+|
T Consensus 97 ~~~inliDtPGh~d-------------F~~e~~~al~~~D~ailVvd-a~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVD-CIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHH-------------HHHHHHHHHhhcCEEEEEEE-CCCCCcccH-HHHHHHHHHCCCCEEEEEECCc
Confidence 45679999999854 23334566788897766654 656654443 3466667777899999999999
Q ss_pred cc
Q 012279 219 LM 220 (467)
Q Consensus 219 ~~ 220 (467)
+.
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 87
No 259
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.5e-07 Score=79.05 Aligned_cols=123 Identities=17% Similarity=0.272 Sum_probs=84.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
.-+.+||+||+-++||+-|+..++.-- ||-|.|.+--.-
T Consensus 5 kflfkivlvgnagvgktclvrrftqgl-fppgqgatigvd---------------------------------------- 43 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVD---------------------------------------- 43 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeee----------------------------------------
Confidence 457899999999999999999999764 677766422211
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEec-CCccc-cc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP-ANQDI-AT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~-a~~d~-~~ 193 (467)
|--+ .+++.+ +...|.++||.|-.+ ++.++.+|.+.++++||+..- +...+ ..
T Consensus 44 ---------fmik--tvev~g-ekiklqiwdtagqer-------------frsitqsyyrsahalilvydiscqpsfdcl 98 (213)
T KOG0095|consen 44 ---------FMIK--TVEVNG-EKIKLQIWDTAGQER-------------FRSITQSYYRSAHALILVYDISCQPSFDCL 98 (213)
T ss_pred ---------EEEE--EEEECC-eEEEEEEeeccchHH-------------HHHHHHHHhhhcceEEEEEecccCcchhhh
Confidence 1111 122333 235789999999654 789999999999998887542 22211 12
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
.+++.-..+......-.|.|-||+|+.+..+
T Consensus 99 pewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 99 PEWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred HHHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 3445555555555666789999999987653
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.58 E-value=1.5e-07 Score=97.93 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=41.1
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---------ccHHHHHHHHHhCCC
Q 012279 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDPT 206 (467)
Q Consensus 136 ~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~~ 206 (467)
..+...++||||||..+ .+.++ ..-+..+|.+||+| ++..+. .+.+.+.+ +...
T Consensus 81 ~~~~~~i~lIDtPGh~~------------f~~~~-~~g~~~aD~ailVV-da~~G~~e~~~~~~~qT~eh~~~---~~~~ 143 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRD------------FIKNM-ITGTSQADVAILVV-ASTAGEFEAGISKDGQTREHALL---AFTL 143 (446)
T ss_pred ccCCeEEEEEECCChHH------------HHHHH-HHhhhhcCEEEEEE-EcCCCceecccCCCccHHHHHHH---HHHc
Confidence 34557899999999543 12333 34467888766655 555442 23334444 4444
Q ss_pred CCc-eEEEeccCcc
Q 012279 207 GER-TFGVLTKLDL 219 (467)
Q Consensus 207 ~~r-ti~VltK~D~ 219 (467)
|.+ .|+|+||+|.
T Consensus 144 gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 144 GVKQMIVCINKMDD 157 (446)
T ss_pred CCCeEEEEEEcccc
Confidence 655 6789999994
No 261
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.3e-07 Score=81.50 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=79.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..+.+++++|+.++|||.||-..+...|-|.... .+ .+ ++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~-----Ti--Gv--------ef------------------------- 43 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL-----TI--GV--------EF------------------------- 43 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccc-----ee--ee--------ee-------------------------
Confidence 3466899999999999999999999998554321 11 11 00
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--cc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~--~~ 193 (467)
| .. .+.|.+ ....|.++||.|..+ ++.++++|.+.+..+||+..-.+.+- +.
T Consensus 44 ----g------~r--~~~id~-k~IKlqiwDtaGqe~-------------frsv~~syYr~a~GalLVydit~r~sF~hL 97 (216)
T KOG0098|consen 44 ----G------AR--MVTIDG-KQIKLQIWDTAGQES-------------FRSVTRSYYRGAAGALLVYDITRRESFNHL 97 (216)
T ss_pred ----c------ee--EEEEcC-ceEEEEEEecCCcHH-------------HHHHHHHHhccCcceEEEEEccchhhHHHH
Confidence 0 00 112222 235788999999755 78999999999998877754333221 12
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+|.=+++......-++++-||+|+....
T Consensus 98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 98 TSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 233444555544456677788999998665
No 262
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.55 E-value=1.4e-07 Score=84.02 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=30.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-cccccc
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRP 75 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p 75 (467)
...++|+++|.+|+||||++|+|+|....+.+.+ .+|+.+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 3567899999999999999999999765454433 344443
No 263
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.55 E-value=3.5e-07 Score=95.13 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.|+++|.-..|||||+.||+|..
T Consensus 36 ~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 36 NIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEccCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 264
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.55 E-value=1.2e-06 Score=76.41 Aligned_cols=156 Identities=16% Similarity=0.223 Sum_probs=95.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
-.+|.++|.-||||||+++.|.|.+. +.-.+|..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~g------------------------------------------- 49 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLG------------------------------------------- 49 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc---cccCCccc-------------------------------------------
Confidence 45899999999999999999999863 11111111
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
|--+.+. .....++++|.-|-.. +++..++|....|++|++|.++. ...-++..
T Consensus 50 -------f~Iktl~-----~~~~~L~iwDvGGq~~-------------lr~~W~nYfestdglIwvvDssD-~~r~~e~~ 103 (185)
T KOG0073|consen 50 -------FQIKTLE-----YKGYTLNIWDVGGQKT-------------LRSYWKNYFESTDGLIWVVDSSD-RMRMQECK 103 (185)
T ss_pred -------eeeEEEE-----ecceEEEEEEcCCcch-------------hHHHHHHhhhccCeEEEEEECch-HHHHHHHH
Confidence 1111111 1246899999999655 68899999999999888887643 33334444
Q ss_pred HHHHHhC----CCCCceEEEeccCcccCCCC-cHHH-HhcCcccccCC--CeEEEEeCChhhhccCccHHHHHHHH
Q 012279 198 KLAREVD----PTGERTFGVLTKLDLMDKGT-NALD-VLEGRSYRLQH--PWVGIVNRSQADINRNIDMIVARRKE 265 (467)
Q Consensus 198 ~l~~~~d----~~~~rti~VltK~D~~~~~~-~~~~-~l~~~~~~l~l--g~~~V~~~s~~~~~~~~~~~~~~~~e 265 (467)
...+.+- -.|.+.+++.||.|+...-. +.+. .+.-+.+.... ..+.+...+++++..+.+++.....+
T Consensus 104 ~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 104 QELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 4333322 23789999999999873211 1111 11111121122 33455666777766666666555444
No 265
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.54 E-value=3.6e-07 Score=95.18 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=43.4
Q ss_pred cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-----cHHHHHHHHHhCCCCC-
Q 012279 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-----TSDAMKLAREVDPTGE- 208 (467)
Q Consensus 136 ~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-----~~~~l~l~~~~d~~~~- 208 (467)
......++|||+||..+ +......++..+|++||+|. ++.+ +. .....+.+..+...|.
T Consensus 81 ~~~~~~i~liDtPGh~d-------------f~~~~~~g~~~aD~aIlVVd-a~~G~~e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRD-------------FIKNMITGTSQADCAVLIID-STTGGFEAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred cCCCEEEEEEECCCHHH-------------HHHHHHhhhhhccEEEEEEE-cccCceecccCCCchHHHHHHHHHHcCCC
Confidence 34556899999999643 33445566789997777665 4433 21 0122223333333466
Q ss_pred ceEEEeccCccc
Q 012279 209 RTFGVLTKLDLM 220 (467)
Q Consensus 209 rti~VltK~D~~ 220 (467)
+.|+|+||+|+.
T Consensus 147 ~iIV~vNKmD~~ 158 (447)
T PLN00043 147 QMICCCNKMDAT 158 (447)
T ss_pred cEEEEEEcccCC
Confidence 568889999986
No 266
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.52 E-value=9.4e-06 Score=80.40 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+.|+|+|.+|||||||+++|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 267
>PRK12740 elongation factor G; Reviewed
Probab=98.50 E-value=4.7e-07 Score=99.47 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=49.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
....++||||||..+ +...+..++..+|.+++++ +++.+. ......+.+.+...+.+.++|+||+
T Consensus 58 ~~~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllvv-d~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 58 KGHKINLIDTPGHVD-------------FTGEVERALRVLDGAVVVV-CAVGGV-EPQTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEEE-eCCCCc-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 357899999999854 2445677888999666555 455444 3334445555656688999999999
Q ss_pred cccCC
Q 012279 218 DLMDK 222 (467)
Q Consensus 218 D~~~~ 222 (467)
|+...
T Consensus 123 D~~~~ 127 (668)
T PRK12740 123 DRAGA 127 (668)
T ss_pred CCCCC
Confidence 98753
No 268
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.1e-06 Score=89.83 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=93.4
Q ss_pred ccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHH
Q 012279 33 SLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (467)
Q Consensus 33 ~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (467)
.+....|.|-|+|.---||||||.+|-+..+-....|-.|
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGIT---------------------------------------- 187 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGIT---------------------------------------- 187 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcc----------------------------------------
Confidence 4566889999999999999999999988876333222222
Q ss_pred HHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 012279 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (467)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~ 192 (467)
...=...+.-|++..+||.||||.-. +..|-.+=..-.| |+++|+.|..++.
T Consensus 188 --------------QhIGAF~V~~p~G~~iTFLDTPGHaA-------------F~aMRaRGA~vtD-IvVLVVAadDGVm 239 (683)
T KOG1145|consen 188 --------------QHIGAFTVTLPSGKSITFLDTPGHAA-------------FSAMRARGANVTD-IVVLVVAADDGVM 239 (683)
T ss_pred --------------ceeceEEEecCCCCEEEEecCCcHHH-------------HHHHHhccCcccc-EEEEEEEccCCcc
Confidence 11112235556778999999999644 3444444444456 7777777876664
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCCCCc--HHHHhcCcccccCC-CeEEEEeCChhhhc
Q 012279 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQH-PWVGIVNRSQADIN 253 (467)
Q Consensus 193 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~l-g~~~V~~~s~~~~~ 253 (467)
.+ .++-.+.....+.|+|+.+||+|.-...-+ ..+++........+ |-+.+++.|+....
T Consensus 240 pQ-T~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 240 PQ-TLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred Hh-HHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 33 334444455557999999999996532211 12333322222222 44556666664433
No 269
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.49 E-value=2e-07 Score=85.90 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998764
No 270
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.48 E-value=9.3e-07 Score=87.04 Aligned_cols=83 Identities=19% Similarity=0.347 Sum_probs=55.7
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC--------------CCeEEEEEecCCcccccHHHHHHHHHhC
Q 012279 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK--------------PNSVILAISPANQDIATSDAMKLAREVD 204 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~--------------~~~iIL~V~~a~~d~~~~~~l~l~~~~d 204 (467)
.+|++|||||+.+.--. .-.+.+.+.+...-..|+.+ .+|++.++-|....+.. -.+..++.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~-~DIe~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKP-LDIEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCH-HHHHHHHHHh
Confidence 58999999999874322 12333556666777777542 23556666666666644 4455778877
Q ss_pred CCCCceEEEeccCcccCCCC
Q 012279 205 PTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 205 ~~~~rti~VltK~D~~~~~~ 224 (467)
. ....|-||.|+|.+...+
T Consensus 161 ~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred c-ccCeeeeeeccccCCHHH
Confidence 5 589999999999886543
No 271
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.47 E-value=3e-07 Score=80.57 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
.++++|.+|+|||||+|+|+|...
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999999875
No 272
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.47 E-value=4.2e-07 Score=87.52 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=84.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
.+.|.|+|||-.|||||||+++|++..++|.+.-..|--|| +
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT--------------------------------------~ 217 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT--------------------------------------L 217 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch--------------------------------------h
Confidence 57899999999999999999999999999988777666553 0
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH-
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS- 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~- 194 (467)
. ...-|.+....+.||-|+.+- -|..+.+.+ +.+..-+.++|.++-++...+.++..+
T Consensus 218 h----------------~a~Lpsg~~vlltDTvGFisd----LP~~LvaAF-~ATLeeVaeadlllHvvDiShP~ae~q~ 276 (410)
T KOG0410|consen 218 H----------------SAHLPSGNFVLLTDTVGFISD----LPIQLVAAF-QATLEEVAEADLLLHVVDISHPNAEEQR 276 (410)
T ss_pred h----------------hccCCCCcEEEEeechhhhhh----CcHHHHHHH-HHHHHHHhhcceEEEEeecCCccHHHHH
Confidence 0 012355667889999999872 254454444 334555778885554444444443332
Q ss_pred -HHHHHHHHhCC----CCCceEEEeccCcccC
Q 012279 195 -DAMKLAREVDP----TGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 -~~l~l~~~~d~----~~~rti~VltK~D~~~ 221 (467)
..+..+++++- .-.++|=|=||+|..+
T Consensus 277 e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 277 ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 23555666553 2356777778888654
No 273
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.46 E-value=4.9e-07 Score=77.23 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhC---CCCCceEEE
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVD---PTGERTFGV 213 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d---~~~~rti~V 213 (467)
.....+.++|+||-.. ++.|...|.+..++|+.+|.+|..+--+..--++-..++ -.|.|.++.
T Consensus 62 kgnvtiklwD~gGq~r-------------frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 62 KGNVTIKLWDLGGQPR-------------FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred cCceEEEEEecCCCcc-------------HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 3456788999999755 589999999999987777777765321111112222233 248899999
Q ss_pred eccCcccCCC
Q 012279 214 LTKLDLMDKG 223 (467)
Q Consensus 214 ltK~D~~~~~ 223 (467)
-||.|+-+.-
T Consensus 129 GnK~d~~~AL 138 (186)
T KOG0075|consen 129 GNKIDLPGAL 138 (186)
T ss_pred cccccCcccc
Confidence 9999987643
No 274
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.46 E-value=1.4e-07 Score=89.31 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=20.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
+-+.|.+.|.|++|||||+++|..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHH
Confidence 456899999999999999999984
No 275
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.3e-06 Score=86.63 Aligned_cols=83 Identities=24% Similarity=0.404 Sum_probs=55.7
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEEEecCCcccccHHHHHHHHHhCC
Q 012279 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILAISPANQDIATSDAMKLAREVDP 205 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~-------------~~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 205 (467)
.+||+|||||+.+.--. +.-.-+.+.+...-..|+.. .+|.+.++.|...++..-| +.+++.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc
Confidence 58899999999874321 22333455566666666532 3466677777666664444 446676664
Q ss_pred CCCceEEEeccCcccCCCC
Q 012279 206 TGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 206 ~~~rti~VltK~D~~~~~~ 224 (467)
..++|-||.|+|.+.+.+
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 689999999999987654
No 276
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=7.7e-07 Score=79.38 Aligned_cols=151 Identities=17% Similarity=0.263 Sum_probs=93.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+--+|+++|--+|||||++..|--.++ +|..||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~-------vttvPT---------------------------------------- 48 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEI-------VTTVPT---------------------------------------- 48 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCc-------ccCCCc----------------------------------------
Confidence 345899999999999999999876554 333553
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.+|.-..+..+ ...++++|.-|-.+ ++.+.+.|.++.+.+|++|++++.+- -+++
T Consensus 49 ------iGfnVE~v~yk-----n~~f~vWDvGGq~k-------------~R~lW~~Y~~~t~~lIfVvDS~Dr~R-i~ea 103 (181)
T KOG0070|consen 49 ------IGFNVETVEYK-----NISFTVWDVGGQEK-------------LRPLWKHYFQNTQGLIFVVDSSDRER-IEEA 103 (181)
T ss_pred ------cccceeEEEEc-----ceEEEEEecCCCcc-------------cccchhhhccCCcEEEEEEeCCcHHH-HHHH
Confidence 22333333322 56899999999866 57789999999998877776655432 2222
Q ss_pred -HHHHHHhC---CCCCceEEEeccCcccCCCC--cHHHHhcCcccccCCCeE--EEEeCChhhhccCccHHH
Q 012279 197 -MKLAREVD---PTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWV--GIVNRSQADINRNIDMIV 260 (467)
Q Consensus 197 -l~l~~~~d---~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~lg~~--~V~~~s~~~~~~~~~~~~ 260 (467)
-++.+.+. ..+.++++..||.|+...-+ +..+.+.-..+.. ..|+ +..+.++.++.++.+++.
T Consensus 104 k~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~ 174 (181)
T KOG0070|consen 104 KEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLS 174 (181)
T ss_pred HHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHH
Confidence 22333333 34788999999999875433 2223332122222 5666 344455555544444433
No 277
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.42 E-value=2.5e-06 Score=81.88 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEecc
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
.-..++.||.|-|+.+... . +.+ -+|+++++..|...| .+|..+. .-...-=|+|+||
T Consensus 141 AaG~DvIIVETVGvGQsev------~---I~~-------~aDt~~~v~~pg~GD-----~~Q~iK~-GimEiaDi~vINK 198 (323)
T COG1703 141 AAGYDVIIVETVGVGQSEV------D---IAN-------MADTFLVVMIPGAGD-----DLQGIKA-GIMEIADIIVINK 198 (323)
T ss_pred hcCCCEEEEEecCCCcchh------H---Hhh-------hcceEEEEecCCCCc-----HHHHHHh-hhhhhhheeeEec
Confidence 3457999999999976321 1 222 358777777776543 3333321 1011223899999
Q ss_pred CcccCCCCcH---HHHhc-CcccccCCCeE-EEEeCChhhhccCccHHHHHHHHHhhhccCCCC
Q 012279 217 LDLMDKGTNA---LDVLE-GRSYRLQHPWV-GIVNRSQADINRNIDMIVARRKEREYFATSPDY 275 (467)
Q Consensus 217 ~D~~~~~~~~---~~~l~-~~~~~l~lg~~-~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~ 275 (467)
+|.-....-+ ...+. ........||. +|+..++...++..++.++.....+|.....++
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 9943321111 11121 11234457887 466666644444444455555444555444333
No 278
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2.9e-06 Score=87.40 Aligned_cols=156 Identities=15% Similarity=0.277 Sum_probs=92.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...|-|+++|.---||||||-+|=+.++-+...|-.|-..
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI---------------------------------------- 42 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI---------------------------------------- 42 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe----------------------------------------
Confidence 3689999999999999999999998887444444333111
Q ss_pred hhhcCCCCCcCCCcEEEEeecC--CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~--~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
| ...+..+ ..+.|+|+||||.-. +..|=.+=.+=+| |.++|++++..+..
T Consensus 43 ----G----------A~~v~~~~~~~~~itFiDTPGHeA-------------Ft~mRaRGa~vtD-IaILVVa~dDGv~p 94 (509)
T COG0532 43 ----G----------AYQVPLDVIKIPGITFIDTPGHEA-------------FTAMRARGASVTD-IAILVVAADDGVMP 94 (509)
T ss_pred ----e----------eEEEEeccCCCceEEEEcCCcHHH-------------HHHHHhcCCcccc-EEEEEEEccCCcch
Confidence 1 1122222 458999999999654 3444333344557 44555667766544
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCCcH--HHHhcCcc----cccCCCeEEEEeCChhhhccCccHHH
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNA--LDVLEGRS----YRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~----~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
|. .+-...+...+.|+++++||+|+.+..-+. .++..... +.-...++++++.++.++++++.+..
T Consensus 95 QT-iEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 95 QT-IEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred hH-HHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 33 223333444589999999999998543321 12211111 11112345666666666666655543
No 279
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.38 E-value=3.9e-07 Score=80.94 Aligned_cols=121 Identities=15% Similarity=0.262 Sum_probs=78.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..+.+|++.|+.|+|||||+|.++..+|.- .|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~-----------------------qyk------------------------ 39 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ-----------------------QYK------------------------ 39 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH-----------------------Hhc------------------------
Confidence 457789999999999999999999888710 000
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEe-cCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS-PANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~-~a~~d~~~~ 194 (467)
.-.+..|-.+.+.+. .....|.|+||.|-.+ +..+-..|.+.+||.+|+.. +....+.+-
T Consensus 40 ---aTIgadFltKev~Vd---~~~vtlQiWDTAGQER-------------FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L 100 (210)
T KOG0394|consen 40 ---ATIGADFLTKEVQVD---DRSVTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNNPKSFENL 100 (210)
T ss_pred ---cccchhheeeEEEEc---CeEEEEEEEecccHHH-------------hhhcccceecCCceEEEEeecCChhhhccH
Confidence 001123333333322 3446889999999755 56666778999998777632 222223333
Q ss_pred HHH--HHHHHhC---CCCCceEEEeccCcccCC
Q 012279 195 DAM--KLAREVD---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l--~l~~~~d---~~~~rti~VltK~D~~~~ 222 (467)
+.+ +++.+.+ |..-|.|++-||+|+-..
T Consensus 101 ~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 101 ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 322 2455554 455789999999998653
No 280
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.2e-06 Score=86.88 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=65.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.++.+||-||+|||||+|||+....-+.....||--|-+=.. ..++. . -.....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv-~v~d~---r---------------------l~~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVV-YVPDC---R---------------------LDELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEE-ecCch---H---------------------HHHHHHh
Confidence 479999999999999999999988656777889988832111 11110 0 0000000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS 185 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~ 185 (467)
.+ .+...+ ...+.|||.+|+.+.+..| +.+-+-...-|++.|+|+.+|.
T Consensus 58 ~~----c~~k~~--------~~~ve~vDIAGLV~GAs~G------eGLGNkFL~~IRevdaI~hVVr 106 (372)
T COG0012 58 VK----CPPKIR--------PAPVEFVDIAGLVKGASKG------EGLGNKFLDNIREVDAIIHVVR 106 (372)
T ss_pred cC----CCCcEE--------eeeeEEEEecccCCCcccC------CCcchHHHHhhhhcCeEEEEEE
Confidence 01 011111 2478999999999977654 2245556777889997776654
No 281
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.37 E-value=1.9e-06 Score=81.55 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=28.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC-CCCccccc--cccc
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR-DFLPRGSG--IVTR 73 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~-~~lP~~~~--~~Tr 73 (467)
+.-.|+|+|.+++|||+|+|.|+|. +.++.+.+ .||+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~ 45 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTK 45 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCcc
Confidence 4557999999999999999999998 23465544 4555
No 282
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.2e-06 Score=87.33 Aligned_cols=70 Identities=21% Similarity=0.411 Sum_probs=44.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc------c--ccHHHHHHHHHhCCCCCce
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD------I--ATSDAMKLAREVDPTGERT 210 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d------~--~~~~~l~l~~~~d~~~~rt 210 (467)
.+.++|+|+||. + +.+.+|+.. ++.+|+.||+|...... . .+.+-+.+++.+. -...
T Consensus 84 k~~~tIiDaPGH-r-----------dFvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~l 148 (428)
T COG5256 84 KYNFTIIDAPGH-R-----------DFVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQL 148 (428)
T ss_pred CceEEEeeCCch-H-----------HHHHHhhcc-hhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceE
Confidence 468999999993 2 224444433 45678777776543331 1 2333344666554 3678
Q ss_pred EEEeccCcccCCC
Q 012279 211 FGVLTKLDLMDKG 223 (467)
Q Consensus 211 i~VltK~D~~~~~ 223 (467)
|+++||+|.++-.
T Consensus 149 IVavNKMD~v~wd 161 (428)
T COG5256 149 IVAVNKMDLVSWD 161 (428)
T ss_pred EEEEEcccccccC
Confidence 8999999999743
No 283
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.33 E-value=8.7e-07 Score=86.69 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcc
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~ 66 (467)
...+++|||.+|+|||||+|+|+|.....+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 346799999999999999999999875443
No 284
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.31 E-value=1.1e-06 Score=86.61 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcc
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~ 66 (467)
...+|+|||.+|+||||++|+|+|.....+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~ 149 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT 149 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc
Confidence 345799999999999999999999876443
No 285
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.28 E-value=1.8e-06 Score=75.14 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=90.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..-.+++|||+.-+||||||..++.-.| |--+ -|+ ...++-
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkf-aels-----dpt---------vgvdff------------------------ 46 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPT---------VGVDFF------------------------ 46 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCc---------cchHHH------------------------
Confidence 4456799999999999999999998775 2111 111 000000
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.++ +++.......|.|+||.|-.+ ++.++++|.+++-.++++..-.|. -+-+.
T Consensus 47 arl-------------ie~~pg~riklqlwdtagqer-------------frsitksyyrnsvgvllvyditnr-~sfeh 99 (213)
T KOG0091|consen 47 ARL-------------IELRPGYRIKLQLWDTAGQER-------------FRSITKSYYRNSVGVLLVYDITNR-ESFEH 99 (213)
T ss_pred HHH-------------HhcCCCcEEEEEEeeccchHH-------------HHHHHHHHhhcccceEEEEeccch-hhHHH
Confidence 000 112233346789999999654 799999999998866655443332 11111
Q ss_pred ---HHHHHHH-hC-CCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 196 ---AMKLARE-VD-PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 196 ---~l~l~~~-~d-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
++.-|+. +. |...-...|-+|.|+........+-.+......+.-|+..+.+++.+++...+++.
T Consensus 100 v~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 100 VENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred HHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHH
Confidence 1222222 22 44344456789999986543211111111233445677777777776665555544
No 286
>PRK13768 GTPase; Provisional
Probab=98.27 E-value=9.9e-06 Score=78.19 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC--CCeEEEEEecCCcccccHH-----HHHHHHHhCCCCCceEE
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQDIATSD-----AMKLAREVDPTGERTFG 212 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~--~~~iIL~V~~a~~d~~~~~-----~l~l~~~~d~~~~rti~ 212 (467)
.++.++|+||....... .. ......+++.. ++ ++++|+++.......+ .+.+..+. ..+.+.+.
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~-~~~~~~~~l~~~~~~-~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RE-SGRKLVERLSGSSKS-VVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hH-HHHHHHHHHHhcCCe-EEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 48899999998764211 01 11222233332 55 5666666643221111 11112222 34789999
Q ss_pred EeccCcccCCCC
Q 012279 213 VLTKLDLMDKGT 224 (467)
Q Consensus 213 VltK~D~~~~~~ 224 (467)
|+||+|+.+..+
T Consensus 168 v~nK~D~~~~~~ 179 (253)
T PRK13768 168 VLNKADLLSEEE 179 (253)
T ss_pred EEEhHhhcCchh
Confidence 999999987643
No 287
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.8e-06 Score=79.92 Aligned_cols=133 Identities=17% Similarity=0.248 Sum_probs=74.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccc----cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS----GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~----~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
..|.|||..+.||||++|.|....+.-.+. +..++..+++....
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~t-------------------------------- 94 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSIT-------------------------------- 94 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeee--------------------------------
Confidence 369999999999999999999766422111 11222333332211
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccc-cCCCCccHHHHHHHHHHHhhcC--------------CCe
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVA-VEGQPDTIVEDIESMVRSYVEK--------------PNS 179 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~-~~~q~~~~~~~i~~~~~~yi~~--------------~~~ 179 (467)
..+ ....-..+|++|||||+.+-- ..+-.+-+...+.+.-.+|+++ .+|
T Consensus 95 --------hvi--------eE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHc 158 (336)
T KOG1547|consen 95 --------HVI--------EEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHC 158 (336)
T ss_pred --------eee--------eecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEE
Confidence 000 011122589999999998632 2222333444455555555432 236
Q ss_pred EEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 180 VILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 180 iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
++.++-|....+..-| +.+++.+.. -.++|-|+-|+|.+.
T Consensus 159 clyFi~ptGhsLrplD-ieflkrLt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 159 CLYFIPPTGHSLRPLD-IEFLKRLTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred EEEEeCCCCCccCccc-HHHHHHHhh-hheeeeeEeeccccc
Confidence 6666655444443322 334444433 367899999999774
No 288
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1.9e-05 Score=79.68 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=82.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccc--cccccccEEEEEeecCCCCch---hHhhhcCCCCcccChHHHHHHHH
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGSQE---YAEFLHLPKRRFTDFSMVRKEIQ 112 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~i~ 112 (467)
...|++||..|+||||++..|.+. +...+. +.++.-+. + .+.... |+.....+-....+..++.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~~GkkVglI~aDt~-----R-iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHGKKKTVGFITTDHS-----R-IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHHcCCcEEEEecCCc-----c-hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHH
Confidence 357899999999999999999863 211110 11111110 0 001111 22222211111224444444433
Q ss_pred HHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 012279 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (467)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~ 192 (467)
.... ....++.||||||-.... ....+.+.++... ..++.++| |++|+..
T Consensus 314 ~lk~--------------------~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~--~~PdevlL-VLsATtk-- 363 (436)
T PRK11889 314 YFKE--------------------EARVDYILIDTAGKNYRA-----SETVEEMIETMGQ--VEPDYICL-TLSASMK-- 363 (436)
T ss_pred HHHh--------------------ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhh--cCCCeEEE-EECCccC--
Confidence 2211 013589999999986521 1112222222221 23554444 4566542
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhc
Q 012279 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (467)
Q Consensus 193 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 231 (467)
.++....++.+... .-.=+|+||.|.....+.+.++..
T Consensus 364 ~~d~~~i~~~F~~~-~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 364 SKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred hHHHHHHHHHhcCC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 45666777777763 345678999999988888777754
No 289
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.24 E-value=4.7e-06 Score=75.45 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFL 64 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~l 64 (467)
..+.++++|.+|+||||++|+|++..+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 3468999999999999999999998763
No 290
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.24 E-value=7.9e-06 Score=83.85 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=50.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.||||||..... ....+.+..+. + ..+++.+ ++|+++.. -+++...++.+...-..+-+|+||.|
T Consensus 182 ~~DvViIDTaGr~~~d-----~~lm~El~~i~-~-~~~p~e~-lLVlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE-----DSLFEEMLQVA-E-AIQPDNI-IFVMDGSI---GQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcch-----HHHHHHHHHHh-h-hcCCcEE-EEEecccc---ChhHHHHHHHHHhccCCcEEEEECcc
Confidence 4699999999965421 12222232322 1 2356644 45555654 34556666776655567889999999
Q ss_pred ccCCCCcHHHHh
Q 012279 219 LMDKGTNALDVL 230 (467)
Q Consensus 219 ~~~~~~~~~~~l 230 (467)
....+..+..+.
T Consensus 251 ~~argG~aLs~~ 262 (429)
T TIGR01425 251 GHAKGGGALSAV 262 (429)
T ss_pred CCCCccHHhhhH
Confidence 988777666654
No 291
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.23 E-value=4.1e-06 Score=84.14 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=61.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC-CcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~-lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
.++.+||.||+|||||+|+|++... -+.....||..|..=.+ ..++...++ +....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v-~v~d~r~d~--------------------L~~~~-- 59 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV-NPSDPRLDL--------------------LAIYI-- 59 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE-EechhHHHH--------------------HHHHh--
Confidence 4689999999999999999999875 34455678777743222 111110000 00000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS 185 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~ 185 (467)
.. .......+.++|.||+...+..+. ...+-..+.+++.|+++.+|.
T Consensus 60 -~~--------------~~~~~a~i~~~DiaGlv~gAs~g~------Glgn~fL~~ir~~d~l~hVvr 106 (368)
T TIGR00092 60 -KP--------------EKVPPTTTEFVDIAGLVGGASKGE------GLGNQFLANIREVDIIQHVVR 106 (368)
T ss_pred -CC--------------cCcCCceEEEEeccccccchhccc------CcchHHHHHHHhCCEEEEEEe
Confidence 00 000123678999999998664432 134456677889996665554
No 292
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=5.3e-06 Score=75.67 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=45.6
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc---CCCeEEEEEecCCcccccHHHHHHH----HHh--CCCCCceE
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE---KPNSVILAISPANQDIATSDAMKLA----REV--DPTGERTF 211 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~---~~~~iIL~V~~a~~d~~~~~~l~l~----~~~--d~~~~rti 211 (467)
.++|||+||-.+ ++.-..+|.+ ..-+||++|.++.-+-.-.++-++. -.- ..++.+++
T Consensus 83 ~~~LVD~PGH~r-------------lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSR-------------LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHH-------------HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 489999999876 4555666766 4556777776665433233332221 111 34578999
Q ss_pred EEeccCcccCCCC
Q 012279 212 GVLTKLDLMDKGT 224 (467)
Q Consensus 212 ~VltK~D~~~~~~ 224 (467)
++.||.|+....+
T Consensus 150 IaCNKqDl~tAkt 162 (238)
T KOG0090|consen 150 IACNKQDLFTAKT 162 (238)
T ss_pred EEecchhhhhcCc
Confidence 9999999875544
No 293
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.21 E-value=2.5e-06 Score=82.86 Aligned_cols=102 Identities=23% Similarity=0.333 Sum_probs=68.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.-+.|.+||-||+||||++|+|+....-|.....||--|-+-+..- ++. +| +
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v-~d~-------------Rf--------------d 70 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEV-PDS-------------RF--------------D 70 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeec-Cch-------------HH--------------H
Confidence 4458999999999999999999988765666678888885443311 000 00 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCC---CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAIS 185 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~---~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~ 185 (467)
..+ .+|+|.. ..|+++|..|+.+.+..|+ .+-+-..+.|++.|+|+-+|-
T Consensus 71 ~l~-------------~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~------GLGN~FLs~iR~vDaifhVVr 123 (391)
T KOG1491|consen 71 LLC-------------PIYGPKSKVPAFLTVYDIAGLVKGASAGE------GLGNKFLSHIRHVDAIFHVVR 123 (391)
T ss_pred HHH-------------HhcCCcceeeeeEEEEeecccccCcccCc------CchHHHHHhhhhccceeEEEE
Confidence 001 1333322 4789999999999776553 245666777889997665553
No 294
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=5.4e-06 Score=75.42 Aligned_cols=121 Identities=15% Similarity=0.227 Sum_probs=76.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
-.+..||++|++++|||-||..++.-.|-+ -++.++-+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~-----~SksTIGvef----------------------------------- 51 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSL-----ESKSTIGVEF----------------------------------- 51 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCc-----ccccceeEEE-----------------------------------
Confidence 467889999999999999999999888733 2222221111
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-cc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-AT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~-~~ 193 (467)
.... +.+. .......|+||.|.-+ .+.++-.|.+.+...+|+.+-.+.. + ..
T Consensus 52 ----------~t~t--~~vd-~k~vkaqIWDTAGQER-------------yrAitSaYYrgAvGAllVYDITr~~Tfenv 105 (222)
T KOG0087|consen 52 ----------ATRT--VNVD-GKTVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITRRQTFENV 105 (222)
T ss_pred ----------Eeec--eeec-CcEEEEeeecccchhh-------------hccccchhhcccceeEEEEechhHHHHHHH
Confidence 0111 1121 1234678999999765 5778899999998777665332211 1 12
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.++|.-++.......++++|-||+|+...
T Consensus 106 ~rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 106 ERWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred HHHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 23333334433446889999999999863
No 295
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.20 E-value=1.6e-06 Score=80.78 Aligned_cols=110 Identities=25% Similarity=0.358 Sum_probs=64.4
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 34 ~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
+..--.+|++||-||+||||||..|++..--..+...+|-
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTL---------------------------------------- 97 (364)
T KOG1486|consen 58 LKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTL---------------------------------------- 97 (364)
T ss_pred eccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEE----------------------------------------
Confidence 3344568999999999999999999975421222222111
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
..+.| +...+..++.++|+||++..+..|... ..+ +-...+.+| +||+|.+|...- .
T Consensus 98 --tcIpG-------------vi~y~ga~IQllDLPGIieGAsqgkGR--GRQ----viavArtaD-lilMvLDatk~e-~ 154 (364)
T KOG1486|consen 98 --TCIPG-------------VIHYNGANIQLLDLPGIIEGASQGKGR--GRQ----VIAVARTAD-LILMVLDATKSE-D 154 (364)
T ss_pred --Eeecc-------------eEEecCceEEEecCcccccccccCCCC--Cce----EEEEeeccc-EEEEEecCCcch-h
Confidence 11123 333456799999999999876543221 111 222234556 788888887532 2
Q ss_pred HHHHHHHHHhCCCC
Q 012279 194 SDAMKLAREVDPTG 207 (467)
Q Consensus 194 ~~~l~l~~~~d~~~ 207 (467)
++.+ +-+++..-|
T Consensus 155 qr~~-le~ELe~vG 167 (364)
T KOG1486|consen 155 QREI-LEKELEAVG 167 (364)
T ss_pred HHHH-HHHHHHHhc
Confidence 2222 445554433
No 296
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.19 E-value=1.2e-06 Score=87.43 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=23.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
-.+.|||-||+||||+||+|+|...
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Confidence 3599999999999999999999986
No 297
>PRK12288 GTPase RsgA; Reviewed
Probab=98.19 E-value=5e-06 Score=83.67 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFL 64 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~l 64 (467)
.++++|.+|+|||||||+|+|...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 4899999999999999999997653
No 298
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=4e-06 Score=90.96 Aligned_cols=135 Identities=18% Similarity=0.274 Sum_probs=83.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
....|.++|.-.+||||+.++|+-.. |...+.. ++. .+..+.|+.+ .+.+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k~G-~v~-----------------~g~~~~D~~e------~Eqe 58 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISKIG-EVH-----------------DGAATMDWME------QEQE 58 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCCCc-ccc-----------------CCCccCCCcH------HHHh
Confidence 56679999999999999999998432 2222200 000 0111222222 1222
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
| | -.+....+.+...+ ...++||||||..+- ..-+.+.++-.|..|++ ++|..+...+..
T Consensus 59 R--G--ITI~saa~s~~~~~--~~~iNlIDTPGHVDF-------------t~EV~rslrvlDgavvV-vdaveGV~~QTE 118 (697)
T COG0480 59 R--G--ITITSAATTLFWKG--DYRINLIDTPGHVDF-------------TIEVERSLRVLDGAVVV-VDAVEGVEPQTE 118 (697)
T ss_pred c--C--CEEeeeeeEEEEcC--ceEEEEeCCCCcccc-------------HHHHHHHHHhhcceEEE-EECCCCeeecHH
Confidence 1 2 22333344433222 478999999999873 44466667777865554 456666655544
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+.++++..+.|.++++||+|.+..
T Consensus 119 -tv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 119 -TVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred -HHHHHHhhcCCCeEEEEECcccccc
Confidence 3678888889999999999998854
No 299
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.17 E-value=3e-06 Score=73.59 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|.+||+.++||||||-+++...|=|-... | |
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~--t-----I-------------------------------------- 44 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPT--T-----I-------------------------------------- 44 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCc--e-----e--------------------------------------
Confidence 456899999999999999999998776222111 0 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
| ..|..+ .+.+.+ +...|.|+||.|..+ ++.++-+|.+.+..|||+..-...|--..-
T Consensus 45 ---G--vDFkvk--~m~vdg-~~~KlaiWDTAGqEr-------------FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL- 102 (209)
T KOG0080|consen 45 ---G--VDFKVK--VMQVDG-KRLKLAIWDTAGQER-------------FRTLTPSYYRGAQGIILVYDVTSRDTFVKL- 102 (209)
T ss_pred ---e--eeEEEE--EEEEcC-ceEEEEEEeccchHh-------------hhccCHhHhccCceeEEEEEccchhhHHhH-
Confidence 0 111111 122333 336899999999755 788999999999988887644333211111
Q ss_pred HHHHHHhCCC----CCceEEEeccCcccC
Q 012279 197 MKLAREVDPT----GERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~l~~~~d~~----~~rti~VltK~D~~~ 221 (467)
-.++++++-. ..-.+.|-||+|.-.
T Consensus 103 d~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 103 DIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred HHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 1256677643 233567899999653
No 300
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.16 E-value=3.2e-05 Score=66.79 Aligned_cols=126 Identities=22% Similarity=0.298 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+++|+|.-|+|||++|+-|+-.+..|-..-..|---+-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY--------------------------------------- 48 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY--------------------------------------- 48 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe---------------------------------------
Confidence 45689999999999999999998555423211111111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCC--CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~--~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
...+..+. ...|.|.||.|+...+ .++-+.|.+-+|+.+|+..+++.. .-
T Consensus 49 --------------~~svet~rgarE~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~e--Sf 100 (198)
T KOG3883|consen 49 --------------VASVETDRGAREQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPE--SF 100 (198)
T ss_pred --------------eEeeecCCChhheEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHH--HH
Confidence 01122222 2578899999997632 567899999999988888776542 22
Q ss_pred HHHH-HHHHhCCC----CCceEEEeccCcccCCCCcHHHH
Q 012279 195 DAMK-LAREVDPT----GERTFGVLTKLDLMDKGTNALDV 229 (467)
Q Consensus 195 ~~l~-l~~~~d~~----~~rti~VltK~D~~~~~~~~~~~ 229 (467)
+... +-+++|.. ..++++..||.|+.++.+...++
T Consensus 101 ~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~ 140 (198)
T KOG3883|consen 101 QRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDV 140 (198)
T ss_pred HHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHH
Confidence 2222 34456543 46788889999998776543333
No 301
>PRK12289 GTPase RsgA; Reviewed
Probab=98.15 E-value=4.2e-06 Score=84.27 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFL 64 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~l 64 (467)
.++|+|.+|+|||||||+|+|...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~ 198 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVEL 198 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccc
Confidence 4899999999999999999987643
No 302
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.14 E-value=1.5e-05 Score=73.86 Aligned_cols=145 Identities=15% Similarity=0.164 Sum_probs=82.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|..++|||+|.-.+++..|.+.-.++.-
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie--------------------------------------------- 37 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE--------------------------------------------- 37 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc---------------------------------------------
Confidence 45799999999999999999999887332111100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
..-..+ +.+. .....+.|+||+|... ...|-..|+...++.+++.. .+..-+-+.+.
T Consensus 38 ------d~y~k~--~~v~-~~~~~l~ilDt~g~~~-------------~~~~~~~~~~~~~gF~lVys-itd~~SF~~~~ 94 (196)
T KOG0395|consen 38 ------DSYRKE--LTVD-GEVCMLEILDTAGQEE-------------FSAMRDLYIRNGDGFLLVYS-ITDRSSFEEAK 94 (196)
T ss_pred ------ccceEE--EEEC-CEEEEEEEEcCCCccc-------------ChHHHHHhhccCcEEEEEEE-CCCHHHHHHHH
Confidence 000011 1222 3346788999999322 35677889999997766543 32221122222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChh
Q 012279 198 KLAREV----DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQA 250 (467)
Q Consensus 198 ~l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~ 250 (467)
.+..++ +....|++.|.||+|+........+-.+........+|+.++.....
T Consensus 95 ~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~ 151 (196)
T KOG0395|consen 95 QLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNY 151 (196)
T ss_pred HHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCc
Confidence 222222 34456999999999998743321111111123334556666655443
No 303
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.09 E-value=1.2e-05 Score=77.24 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
..++++|.+|+|||||+|+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4789999999999999999998754
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.09 E-value=2.7e-06 Score=81.21 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=32.6
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCcccccHHH----HHHHHHhCCCCCceEEEec
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDIATSDA----MKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~~iIL~V~~a~~d~~~~~~----l~l~~~~d~~~~rti~Vlt 215 (467)
+..|+||||-...-.. ...... +.++++ +-..+++.++++..-...... +.-....-..+.|.|.|+|
T Consensus 92 ~y~l~DtPGQiElf~~------~~~~~~-i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH------SDSGRK-IVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHHH------SHHHHH-HHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEEEe------chhHHH-HHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 7899999998763211 011222 334444 344455556665431111111 1111111124789999999
Q ss_pred cCcccCC
Q 012279 216 KLDLMDK 222 (467)
Q Consensus 216 K~D~~~~ 222 (467)
|+|++++
T Consensus 165 K~Dl~~~ 171 (238)
T PF03029_consen 165 KIDLLSK 171 (238)
T ss_dssp -GGGS-H
T ss_pred ccCcccc
Confidence 9999974
No 305
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.08 E-value=2.4e-05 Score=69.90 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.3
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
|.++++|..+|||||+++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999976
No 306
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=4.4e-05 Score=83.31 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=80.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCC-------CchhHhhhcCCCCcccChHHHHHHHH
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG-------SQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (467)
.|++||.+|+||||.+..|.+... +.... -.+.+...+.. ...|+.....+-....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~------kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA------DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC------CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 579999999999999999998632 21110 01111111111 12334444333333334445444432
Q ss_pred HHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 012279 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (467)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~ 192 (467)
. . ...+++||||||..... ..+.+.+..+.. ...++- +++|++++..
T Consensus 260 ~----~-------------------~~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~e-~~LVLsAt~~-- 306 (767)
T PRK14723 260 A----L-------------------GDKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPVR-RLLLLNAASH-- 306 (767)
T ss_pred H----h-------------------cCCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCCe-EEEEECCCCc--
Confidence 1 1 12479999999976522 112222222221 223443 4555566542
Q ss_pred cHHHHHHHHHhCCCC--CceEEEeccCcccCCCCcHHHHhc
Q 012279 193 TSDAMKLAREVDPTG--ERTFGVLTKLDLMDKGTNALDVLE 231 (467)
Q Consensus 193 ~~~~l~l~~~~d~~~--~rti~VltK~D~~~~~~~~~~~l~ 231 (467)
.++..++++.+.... ..+=+|+||.|-......+.++..
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 233334555554321 345678999999988888777764
No 307
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.05 E-value=4.7e-06 Score=84.62 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 308
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.05 E-value=4.2e-06 Score=74.41 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
..++++|..|+|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999754
No 309
>PRK13796 GTPase YqeH; Provisional
Probab=98.03 E-value=5.7e-06 Score=84.09 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
..++|||.+|+|||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 469999999999999999999754
No 310
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=1.7e-05 Score=80.10 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-.++++|++|+||||++..|.+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999975
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.01 E-value=3.7e-05 Score=72.79 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=82.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeec----CC-------CCchhHhhh-----cCCCC
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT----ED-------GSQEYAEFL-----HLPKR 99 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~----~~-------~~~~~~~~~-----~~~~~ 99 (467)
...+-|+|+|--||||+|++..|.+.-. ... |+ |-.|.+-.. +- .+..|.+.. +-.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~----~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg 90 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH-AKK----TP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG 90 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh-hcc----CC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence 4567899999999999999999986421 110 11 333333111 00 012232221 11122
Q ss_pred cc-------cChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH
Q 012279 100 RF-------TDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS 172 (467)
Q Consensus 100 ~~-------~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~ 172 (467)
.. +.|++|...|++..+ ..+..||||||-+..-.=.-+-.+ ++..
T Consensus 91 I~TsLNLF~tk~dqv~~~iek~~~----------------------~~~~~liDTPGQIE~FtWSAsGsI------Ite~ 142 (366)
T KOG1532|consen 91 IVTSLNLFATKFDQVIELIEKRAE----------------------EFDYVLIDTPGQIEAFTWSASGSI------ITET 142 (366)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhc----------------------ccCEEEEcCCCceEEEEecCCccc------hHhh
Confidence 22 234444444433322 246789999998763211101111 2333
Q ss_pred hhcCCCeEEEEEecCCccccc----HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 173 YVEKPNSVILAISPANQDIAT----SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 173 yi~~~~~iIL~V~~a~~d~~~----~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+...-.++|.+|++....... +..+.....+-...-|+|+|+||.|+.+.+
T Consensus 143 lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 143 LASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred HhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 334445677777765432211 223444555556688999999999998764
No 312
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.01 E-value=1e-05 Score=69.26 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.|...+++|++++|||||+-.+....| --+.-.++-.-..|+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkir------------------------------------- 48 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIR------------------------------------- 48 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEE-------------------------------------
Confidence 456678999999999999998887654 111111111111111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-ccc-cH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA-TS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~-d~~-~~ 194 (467)
.+.|.+ ....|.|+||.|-. .++.++..|.+.++.+|++..-.|. .+. .+
T Consensus 49 --------------Tv~i~G-~~VkLqIwDtAGqE-------------rFrtitstyyrgthgv~vVYDVTn~ESF~Nv~ 100 (198)
T KOG0079|consen 49 --------------TVDING-DRVKLQIWDTAGQE-------------RFRTITSTYYRGTHGVIVVYDVTNGESFNNVK 100 (198)
T ss_pred --------------EeecCC-cEEEEEEeecccHH-------------HHHHHHHHHccCCceEEEEEECcchhhhHhHH
Confidence 112322 23578999999953 4789999999999976665433222 111 22
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+|+-++.-.+ ..+-+.|-||.|..+..
T Consensus 101 rWLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 101 RWLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHHhcCc-cccceecccCCCCccce
Confidence 33443433333 46778999999987654
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=5.9e-05 Score=75.82 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=79.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCC----CchhHhhhcCCCC---cccChHHHHHH
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG----SQEYAEFLHLPKR---RFTDFSMVRKE 110 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~v~~~ 110 (467)
...|+++|++|+||||++..|... +...+. .+.+...+.. ...|..+....+. ...+..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~--------~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR--------TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC--------eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 446789999999999999999853 222221 1111111111 1122222222221 12344555444
Q ss_pred HHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCC
Q 012279 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPAN 188 (467)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~V~~a~ 188 (467)
+..... ....+++||||||-.... .+.+.++. .+. -.++ .+++|.+++
T Consensus 277 l~~l~~--------------------~~~~D~VLIDTAGr~~~d--------~~~l~EL~-~l~~~~~p~-~~~LVLsag 326 (407)
T PRK12726 277 VQYMTY--------------------VNCVDHILIDTVGRNYLA--------EESVSEIS-AYTDVVHPD-LTCFTFSSG 326 (407)
T ss_pred HHHHHh--------------------cCCCCEEEEECCCCCccC--------HHHHHHHH-HHhhccCCc-eEEEECCCc
Confidence 332211 013589999999986521 12223222 222 2445 344455554
Q ss_pred cccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhc
Q 012279 189 QDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (467)
Q Consensus 189 ~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 231 (467)
.. ..+...+++..... ...-+|+||.|.....+.+.++..
T Consensus 327 ~~--~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 MK--SADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred cc--HHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 32 44555666655543 344567999999988877777753
No 314
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.99 E-value=2.8e-05 Score=77.37 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=49.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHH---HHHhhc-CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESM---VRSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~---~~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 214 (467)
..+++||||||..... ....+.+..+ +...+. .++ -+++|++|+. .++++.-++.....-..+-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~-----~~l~~eL~~~~~v~~~~~~~~p~-~~~LVl~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNK-----TNLMEELKKIKRVIKKADPDAPH-EVLLVLDATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCC-----HHHHHHHHHHHHHHhhhcCCCCc-eEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 4699999999986532 1222333322 222222 344 4455666664 3344444555543335667899
Q ss_pred ccCcccCCCCcHHHHhc
Q 012279 215 TKLDLMDKGTNALDVLE 231 (467)
Q Consensus 215 tK~D~~~~~~~~~~~l~ 231 (467)
||.|....+..+.++..
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998887777777653
No 315
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.98 E-value=2.5e-05 Score=69.47 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
..+++++|.+++||||++|+|.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999998654
No 316
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=4.2e-05 Score=65.87 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=80.6
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 35 ~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
|-.|.+++|+|+.++|||-||..++...|-...+ -
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdss--H------------------------------------------- 40 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSS--H------------------------------------------- 40 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhccccc--c-------------------------------------------
Confidence 4568899999999999999999999876510000 0
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc-
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT- 193 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~- 193 (467)
..+..|....|.+ +.....|.|+||.|-.+ ++.++++|.+.+...+|+....+.|--+
T Consensus 41 -----TiGveFgSrIinV---GgK~vKLQIWDTAGQEr-------------FRSVtRsYYRGAAGAlLVYD~Tsrdsfna 99 (214)
T KOG0086|consen 41 -----TIGVEFGSRIVNV---GGKTVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRDSFNA 99 (214)
T ss_pred -----eeeeeecceeeee---cCcEEEEEEeecccHHH-------------HHHHHHHHhccccceEEEEeccchhhHHH
Confidence 0012233333332 22346889999999644 7999999999988777776544443211
Q ss_pred -HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 -~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..++.=++.+.+...-+|.+-||-|+-...
T Consensus 100 LtnWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 100 LTNWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred HHHHHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 223444566666666677778999987554
No 317
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.96 E-value=1.1e-05 Score=74.72 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=43.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.||||||..... .+..+.++++.. .+ .++ -+++|.+++.+. +.+..+..........=+|+||.|
T Consensus 83 ~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~-~~-~~~-~~~LVlsa~~~~---~~~~~~~~~~~~~~~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRD-----EELLEELKKLLE-AL-NPD-EVHLVLSATMGQ---EDLEQALAFYEAFGIDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSSTH-----HHHHHHHHHHHH-HH-SSS-EEEEEEEGGGGG---HHHHHHHHHHHHSSTCEEEEESTT
T ss_pred CCCEEEEecCCcchhh-----HHHHHHHHHHhh-hc-CCc-cceEEEecccCh---HHHHHHHHHhhcccCceEEEEeec
Confidence 3689999999986521 112222332222 22 444 455566666532 233222222211223456799999
Q ss_pred ccCCCCcHHHHhc
Q 012279 219 LMDKGTNALDVLE 231 (467)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (467)
.........++..
T Consensus 152 et~~~G~~l~~~~ 164 (196)
T PF00448_consen 152 ETARLGALLSLAY 164 (196)
T ss_dssp SSSTTHHHHHHHH
T ss_pred CCCCcccceeHHH
Confidence 9887777666654
No 318
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.96 E-value=4.9e-05 Score=78.82 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=74.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
--+||+||+.|+|||||+-+|+..+|.| .+.-|.|- +.+
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~-i~I------------------------------------- 47 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPR-ILI------------------------------------- 47 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccc---cccccCCc-ccc-------------------------------------
Confidence 3489999999999999999999988632 12222220 000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC----ccccc
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN----QDIAT 193 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~----~d~~~ 193 (467)
.. -..|...+.++||++--.. -+....+-++++|. |++|-+.+ .|--.
T Consensus 48 -Pa-------------dvtPe~vpt~ivD~ss~~~-------------~~~~l~~EirkA~v-i~lvyavd~~~T~D~is 99 (625)
T KOG1707|consen 48 -PA-------------DVTPENVPTSIVDTSSDSD-------------DRLCLRKEIRKADV-ICLVYAVDDESTVDRIS 99 (625)
T ss_pred -CC-------------ccCcCcCceEEEecccccc-------------hhHHHHHHHhhcCE-EEEEEecCChHHhhhhh
Confidence 00 1235556689999983221 13445666888894 44433232 24344
Q ss_pred HHHHHHHHHhC--CCCCceEEEeccCcccCCCCc
Q 012279 194 SDAMKLAREVD--PTGERTFGVLTKLDLMDKGTN 225 (467)
Q Consensus 194 ~~~l~l~~~~d--~~~~rti~VltK~D~~~~~~~ 225 (467)
..+|-+.++.- ....|+|+|-||.|..+....
T Consensus 100 t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 100 TKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 55666777654 246899999999999875543
No 319
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=6.8e-05 Score=63.84 Aligned_cols=132 Identities=21% Similarity=0.272 Sum_probs=83.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
-.+|+.+|-..|||+|+|-.|--.. ++|..||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ipT----------------------------------------- 48 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIPT----------------------------------------- 48 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-------Ccccccc-----------------------------------------
Confidence 3479999999999999999886332 2344442
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH-
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA- 196 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~- 196 (467)
.+|+-+.+. .....+.++|+-|-.+ ++.+.++|.....++|+++.+|..|- .+++
T Consensus 49 -----vGFnvetVt-----ykN~kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr-~eeAr 104 (180)
T KOG0071|consen 49 -----VGFNVETVT-----YKNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDR-IEEAR 104 (180)
T ss_pred -----cceeEEEEE-----eeeeEEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhh-HHHHH
Confidence 234333222 2345788999999766 78999999999999999988877643 2222
Q ss_pred HHHHHHhCCC---CCceEEEeccCcccCCCC--cHHHHhcCcccccCCCeE
Q 012279 197 MKLAREVDPT---GERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWV 242 (467)
Q Consensus 197 l~l~~~~d~~---~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~lg~~ 242 (467)
-++-+.+... ....++..||-|+.+.-. +..+.++-+. -....|+
T Consensus 105 ~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~-~r~~~W~ 154 (180)
T KOG0071|consen 105 NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER-IRDRNWY 154 (180)
T ss_pred HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc-ccCCccE
Confidence 2233333321 345666789999876443 3445554232 2234566
No 320
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.94 E-value=6.6e-06 Score=83.95 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
.-.|.+||-||+||||+||+|+|...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 45789999999999999999999986
No 321
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=3.8e-05 Score=75.96 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
-.++++|.+|+|||||+|+|+|...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999999753
No 322
>PTZ00099 rab6; Provisional
Probab=97.94 E-value=2.4e-05 Score=71.24 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH-HHHHHHHHhCCCCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~l~l~~~~d~~~~rti~VltK 216 (467)
..++.|+||||..+ ...+...|++.+|++|+++...+.. +... ..+..+........++++|.||
T Consensus 28 ~v~l~iwDt~G~e~-------------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQER-------------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHH-------------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 46889999999755 3566788999999766665433321 1111 1222222222235678999999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHHHHHh
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKERE 267 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~ 267 (467)
+|+.+......+.........+..|+.+++..+.+++..++.+.....+.+
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 998753221111111111222345677888877777777666665554433
No 323
>PRK14974 cell division protein FtsY; Provisional
Probab=97.93 E-value=8.8e-05 Score=74.22 Aligned_cols=81 Identities=31% Similarity=0.431 Sum_probs=51.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
.++.||||||..... ....+.++.+.+ .-+++.++ +|.++.. .++++..++.....-.-.-+|+||.|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd~~i-LVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPDLVI-FVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCceEE-Eeecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 579999999987532 223333333322 23567444 5556654 346666666665433456789999999
Q ss_pred cCCCCcHHHHhc
Q 012279 220 MDKGTNALDVLE 231 (467)
Q Consensus 220 ~~~~~~~~~~l~ 231 (467)
...+..+..+..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 988877766653
No 324
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.0002 Score=73.61 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=78.9
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCC---cccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFL---PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~l---P~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
-..|++||..|+||||++..|.|...+ +...+..|.-...+.. -+.-..|+..++.+-....+..++...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~riga---lEQL~~~a~ilGvp~~~v~~~~dl~~al~-- 265 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGG---HEQLRIYGKLLGVSVRSIKDIADLQLMLH-- 265 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhH---HHHHHHHHHHcCCceecCCCHHHHHHHHH--
Confidence 347999999999999999999885321 1111211111100000 00001223333322222233333222111
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.-...++.+|||+|..... ....+.+..+. . ...+.- .++|++|+.. .+
T Consensus 266 ---------------------~l~~~d~VLIDTaGrsqrd-----~~~~~~l~~l~-~-~~~~~~-~~LVl~at~~--~~ 314 (420)
T PRK14721 266 ---------------------ELRGKHMVLIDTVGMSQRD-----QMLAEQIAMLS-Q-CGTQVK-HLLLLNATSS--GD 314 (420)
T ss_pred ---------------------HhcCCCEEEecCCCCCcch-----HHHHHHHHHHh-c-cCCCce-EEEEEcCCCC--HH
Confidence 1123588999999987531 11222222221 1 122333 4455566643 34
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhc
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 231 (467)
+..++++.+... .-.=+|+||.|.......+.+++.
T Consensus 315 ~~~~~~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 315 TLDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred HHHHHHHHhcCC-CCCEEEEEeeeCCCCccHHHHHHH
Confidence 445566666553 344578999999988877777754
No 325
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.92 E-value=0.00025 Score=68.79 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=82.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCC----CchhHhhhcCCCCc---ccChHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG----SQEYAEFLHLPKRR---FTDFSMVRK 109 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~v~~ 109 (467)
..+.|+++|.+++||||++..|.+.- ...+. .+.+...+.. ...|..+....+-. ..+..++.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~--------~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~ 144 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKK--------TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR 144 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCC--------eEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHH
Confidence 34799999999999999999998752 11110 0111111111 11122221111111 123334433
Q ss_pred HHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 012279 110 EIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ 189 (467)
Q Consensus 110 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~ 189 (467)
.+..... ....++.||||||-.... ....+.+..+.. .-+++- +++|.+|+.
T Consensus 145 ~l~~l~~--------------------~~~~D~ViIDt~Gr~~~~-----~~~l~el~~~~~--~~~~~~-~~LVl~a~~ 196 (270)
T PRK06731 145 ALTYFKE--------------------EARVDYILIDTAGKNYRA-----SETVEEMIETMG--QVEPDY-ICLTLSASM 196 (270)
T ss_pred HHHHHHh--------------------cCCCCEEEEECCCCCcCC-----HHHHHHHHHHHh--hhCCCe-EEEEEcCcc
Confidence 3322110 113689999999986421 111222222221 224553 455566654
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhc
Q 012279 190 DIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (467)
Q Consensus 190 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 231 (467)
. .++....++.+... ...=+|+||.|.......+.++..
T Consensus 197 ~--~~d~~~~~~~f~~~-~~~~~I~TKlDet~~~G~~l~~~~ 235 (270)
T PRK06731 197 K--SKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 235 (270)
T ss_pred C--HHHHHHHHHHhCCC-CCCEEEEEeecCCCCccHHHHHHH
Confidence 2 45667788887764 445578999999988877777654
No 326
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.89 E-value=4.6e-05 Score=74.96 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999999865
No 327
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.88 E-value=6.3e-05 Score=84.96 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
.+.++||||||... +..+...+...+|.++|+ ++++.++..+ ....+..+...+.++++|+||+|
T Consensus 525 ~p~i~fiDTPGhe~-------------F~~lr~~g~~~aDivlLV-VDa~~Gi~~q-T~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHEA-------------FTSLRKRGGSLADLAVLV-VDINEGFKPQ-TIEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcHH-------------HHHHHHhhcccCCEEEEE-EECcccCCHh-HHHHHHHHHHcCCCEEEEEECCC
Confidence 47899999999543 345555667778855554 4566544333 33333444445789999999999
Q ss_pred ccC
Q 012279 219 LMD 221 (467)
Q Consensus 219 ~~~ 221 (467)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 874
No 328
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=6.5e-05 Score=63.78 Aligned_cols=123 Identities=17% Similarity=0.290 Sum_probs=78.0
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 35 ~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
+.....-+++|+-++|||.||..++...| ...||..+.+
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkf-------madcphtigv---------------------------------- 46 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIGV---------------------------------- 46 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccce----------------------------------
Confidence 34566789999999999999999998887 3445532211
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc---c
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---I 191 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d---~ 191 (467)
.|-...| ++++.. ..|.++||.|-.+ ++.++++|.+.+...+++. +-... -
T Consensus 47 ---------efgtrii--evsgqk-iklqiwdtagqer-------------fravtrsyyrgaagalmvy-ditrrstyn 100 (215)
T KOG0097|consen 47 ---------EFGTRII--EVSGQK-IKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVY-DITRRSTYN 100 (215)
T ss_pred ---------ecceeEE--EecCcE-EEEEEeecccHHH-------------HHHHHHHHhccccceeEEE-Eehhhhhhh
Confidence 1222222 344433 5789999999644 7899999999887554443 32221 1
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 192 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
..+.++.=++.+.....-++.+-||+|+-+...
T Consensus 101 hlsswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 101 HLSSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred hHHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 123344444555433455666789999986554
No 329
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.84 E-value=8.9e-05 Score=70.26 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=66.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccc--cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
+|+++|..+|||||..+.+.+.. .|..+.- .|..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCce-----------------------------------------
Confidence 58999999999999999999864 4554321 111110
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC-ccccc---
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN-QDIAT--- 193 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~-~d~~~--- 193 (467)
.-.+.......+.+||.||........ ....-....++..++|.| .++. .++..
T Consensus 39 -------------~~~v~~~~~~~l~iwD~pGq~~~~~~~--------~~~~~~~if~~v~~LIyV-~D~qs~~~~~~l~ 96 (232)
T PF04670_consen 39 -------------KSHVRFLSFLPLNIWDCPGQDDFMENY--------FNSQREEIFSNVGVLIYV-FDAQSDDYDEDLA 96 (232)
T ss_dssp -------------EEEEECTTSCEEEEEEE-SSCSTTHTT--------HTCCHHHHHCTESEEEEE-EETT-STCHHHHH
T ss_pred -------------EEEEecCCCcEEEEEEcCCcccccccc--------ccccHHHHHhccCEEEEE-EEcccccHHHHHH
Confidence 112333445689999999987632110 011122335677755555 4555 44311
Q ss_pred --HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 --SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 --~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+.++.+.+..| +.++.+.+.|+|++.++
T Consensus 97 ~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 97 YLSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 122345566777 68899999999998643
No 330
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.83 E-value=0.00012 Score=64.69 Aligned_cols=58 Identities=10% Similarity=0.231 Sum_probs=36.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.||||||+... ...++..+|.+|+++.|.-. ++..+.+ ..-...--+.|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~----------------~~~~~~~Ad~~ivv~tpe~~-----D~y~~~k-~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS----------------EVDIASMADTTVVVMAPGAG-----DDIQAIK-AGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh----------------hhhHHHhCCEEEEEECCCch-----hHHHHhh-hhHhhhcCEEEEeCCC
Confidence 479999999997541 23467788877777766522 2332222 1222233488999998
No 331
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.81 E-value=4.1e-06 Score=73.93 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=45.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-HHHHHHHhCC--CCCceEEEeccC
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-AMKLAREVDP--TGERTFGVLTKL 217 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-~l~l~~~~d~--~~~rti~VltK~ 217 (467)
.+.++||.|-.. +..+++.|.+.+.+.+|+..- .|...-+ .+.+-+++.. ...|+++|-||+
T Consensus 70 r~mlWdtagqeE-------------fDaItkAyyrgaqa~vLVFST--TDr~SFea~~~w~~kv~~e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 70 RSMLWDTAGQEE-------------FDAITKAYYRGAQASVLVFST--TDRYSFEATLEWYNKVQKETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHhccchh-------------HHHHHHHHhccccceEEEEec--ccHHHHHHHHHHHHHHHHHhccCCeEEeeccc
Confidence 456899998543 578899999999877766532 3332222 2334444432 368999999999
Q ss_pred cccCCC
Q 012279 218 DLMDKG 223 (467)
Q Consensus 218 D~~~~~ 223 (467)
|+++..
T Consensus 135 Dlveds 140 (246)
T KOG4252|consen 135 DLVEDS 140 (246)
T ss_pred hhhHhh
Confidence 999754
No 332
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.80 E-value=4.1e-05 Score=77.37 Aligned_cols=134 Identities=18% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
++..|++|-.---|||||+.+|+...---+..+-++ ++..|..++.++
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--------------------------ERvMDSnDlEkE------ 51 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--------------------------ERVMDSNDLEKE------ 51 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchh--------------------------hhhcCccchhhh------
Confidence 567899999999999999999997652001101111 111122222111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.|.+ +-.+.-. + .++...+.+|||||.-+.. .-+.+-++-.|+++|+|.+.. +.-.+.-
T Consensus 52 --RGIT--ILaKnTa--v-~~~~~~INIvDTPGHADFG-------------GEVERvl~MVDgvlLlVDA~E-GpMPQTr 110 (603)
T COG1217 52 --RGIT--ILAKNTA--V-NYNGTRINIVDTPGHADFG-------------GEVERVLSMVDGVLLLVDASE-GPMPQTR 110 (603)
T ss_pred --cCcE--EEeccce--e-ecCCeEEEEecCCCcCCcc-------------chhhhhhhhcceEEEEEEccc-CCCCchh
Confidence 1210 1001111 1 2345789999999987632 123344455587777766544 3334444
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
+ ..++.-..|-+-|+|+||+|.-+..-
T Consensus 111 F-VlkKAl~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 111 F-VLKKALALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred h-hHHHHHHcCCCcEEEEeCCCCCCCCH
Confidence 3 44555556888899999999876543
No 333
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=6.5e-05 Score=78.55 Aligned_cols=80 Identities=28% Similarity=0.309 Sum_probs=44.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
.++.||||||..... ....+.+..+ .... ... .++|++++.. ..+...+++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D-----~~l~eeL~~L-~aa~-~~a--~lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRD-----RALAAQLNWL-RAAR-QVT--SLLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhh-----HHHHHHHHHH-HHhh-cCC--cEEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 689999999986421 1112222221 2222 222 3444555542 33333445554432 456689999999
Q ss_pred cCCCCcHHHHhc
Q 012279 220 MDKGTNALDVLE 231 (467)
Q Consensus 220 ~~~~~~~~~~l~ 231 (467)
....+.+++++.
T Consensus 497 t~~lG~aLsv~~ 508 (559)
T PRK12727 497 TGRFGSALSVVV 508 (559)
T ss_pred ccchhHHHHHHH
Confidence 877777777654
No 334
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=5.6e-05 Score=73.46 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+++|..|+|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6899999999999999999984
No 335
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.79 E-value=0.00034 Score=72.50 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=47.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
.++.||||||..... ....+.+..+... ...+. -+++|++++.. ..+..++++.+...+. .=+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~-~~~LVl~a~~~--~~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPI-DVYLVLSATTK--YEDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCC-eEEEEEECCCC--HHHHHHHHHHhCCCCC-CEEEEecccc
Confidence 689999999986421 1122233333331 11333 34455666553 3444456666665443 3578999999
Q ss_pred cCCCCcHHHHhc
Q 012279 220 MDKGTNALDVLE 231 (467)
Q Consensus 220 ~~~~~~~~~~l~ 231 (467)
........+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 877766666654
No 336
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.79 E-value=0.00015 Score=61.85 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=76.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
--+|.+.|--||||+|+|.-|.+.+. +. .|
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~--~h---lt--------------------------------------------- 46 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDP--RH---LT--------------------------------------------- 46 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCCh--hh---cc---------------------------------------------
Confidence 34799999999999999999999874 21 11
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
.+.+|+.. ++.+....+|+++|.-|-.. ++.....|..+.|.+|.++.++......+-..
T Consensus 47 ---pT~GFn~k----~v~~~g~f~LnvwDiGGqr~-------------IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 47 ---PTNGFNTK----KVEYDGTFHLNVWDIGGQRG-------------IRPYWSNYYENVDGLIYVIDSTDEKRFEEISE 106 (185)
T ss_pred ---ccCCcceE----EEeecCcEEEEEEecCCccc-------------cchhhhhhhhccceEEEEEeCCchHhHHHHHH
Confidence 12334433 34444557899999999655 57789999999997777766444322222223
Q ss_pred HHHHHhCC---CCCceEEEeccCcccCC
Q 012279 198 KLAREVDP---TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 198 ~l~~~~d~---~~~rti~VltK~D~~~~ 222 (467)
.++..++. ...++.+-.||-|++..
T Consensus 107 el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 107 ELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 33333333 34677778899997743
No 337
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=5.9e-05 Score=77.65 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
++..++||-.---|||||...|+... | |+-+. ... +++.+-++.+.+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~~-------------------~~q------~q~LDkl~vERE 105 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDNN-------------------IGQ------EQVLDKLQVERE 105 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCCC-------------------Cch------hhhhhhhhhhhh
Confidence 44578999999999999999998542 1 11110 000 122222222222
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.|. .+....-++........-|.+|||||..+.. .-+.+-+.-++.+||+| +|+++...+..
T Consensus 106 --RGI--TIkaQtasify~~~~~ylLNLIDTPGHvDFs-------------~EVsRslaac~G~lLvV-DA~qGvqAQT~ 167 (650)
T KOG0462|consen 106 --RGI--TIKAQTASIFYKDGQSYLLNLIDTPGHVDFS-------------GEVSRSLAACDGALLVV-DASQGVQAQTV 167 (650)
T ss_pred --cCc--EEEeeeeEEEEEcCCceEEEeecCCCccccc-------------ceehehhhhcCceEEEE-EcCcCchHHHH
Confidence 232 2222222332333344689999999988743 22444455667666665 56676655554
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+...+ ..+-.+|.|+||+|+-...
T Consensus 168 anf~lAf-e~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 168 ANFYLAF-EAGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred HHHHHHH-HcCCeEEEeeeccCCCCCC
Confidence 3333222 3478999999999987543
No 338
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00034 Score=71.46 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.||||||..... ....+.+..+....-.....-+++|.+|+.+ ..+....++..... ...=+|+||.|
T Consensus 299 ~~D~VLIDTaGr~~rd-----~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~-~~~glIlTKLD 370 (432)
T PRK12724 299 GSELILIDTAGYSHRN-----LEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL-NYRRILLTKLD 370 (432)
T ss_pred CCCEEEEeCCCCCccC-----HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC-CCCEEEEEccc
Confidence 4688999999986421 1122222222221111112234445566653 33455566666443 34567899999
Q ss_pred ccCCCCcHHHHhc
Q 012279 219 LMDKGTNALDVLE 231 (467)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (467)
-......+.++..
T Consensus 371 Et~~~G~il~i~~ 383 (432)
T PRK12724 371 EADFLGSFLELAD 383 (432)
T ss_pred CCCCccHHHHHHH
Confidence 9988877777754
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.77 E-value=4.9e-05 Score=74.06 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHH---HHHhhc-CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESM---VRSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~---~~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 214 (467)
..++.||||||..... ....+.+..+ +...+. .++.++| |++++. ..+++..+......-...-+|+
T Consensus 154 ~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~L-Vl~a~~---~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLL-VLDATT---GQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEE-EEECCC---CHHHHHHHHHHHhhCCCCEEEE
Confidence 4689999999986521 1122223222 221222 2554444 555654 3444444554443234567889
Q ss_pred ccCcccCCCCcHHHHhc
Q 012279 215 TKLDLMDKGTNALDVLE 231 (467)
Q Consensus 215 tK~D~~~~~~~~~~~l~ 231 (467)
||.|.....+.+.++..
T Consensus 225 TKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAY 241 (272)
T ss_pred EccCCCCCccHHHHHHH
Confidence 99999888777766654
No 340
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.0001 Score=75.86 Aligned_cols=73 Identities=21% Similarity=0.410 Sum_probs=45.4
Q ss_pred eecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC-CceEE
Q 012279 134 IYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFG 212 (467)
Q Consensus 134 i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~-~rti~ 212 (467)
+.+.....+||...|. + +..|+ ...+-+| ++|+.+++|-++... .++++..+.+.| .|++|
T Consensus 107 vvsgK~RRiTflEcp~--D-------------l~~mi-DvaKIaD-LVlLlIdgnfGfEME-TmEFLnil~~HGmPrvlg 168 (1077)
T COG5192 107 VVSGKTRRITFLECPS--D-------------LHQMI-DVAKIAD-LVLLLIDGNFGFEME-TMEFLNILISHGMPRVLG 168 (1077)
T ss_pred EeecceeEEEEEeChH--H-------------HHHHH-hHHHhhh-eeEEEeccccCceeh-HHHHHHHHhhcCCCceEE
Confidence 4444557899999982 2 11111 1122345 667777888877443 444555555554 78999
Q ss_pred EeccCcccCCCC
Q 012279 213 VLTKLDLMDKGT 224 (467)
Q Consensus 213 VltK~D~~~~~~ 224 (467)
|+|+.|+.....
T Consensus 169 V~ThlDlfk~~s 180 (1077)
T COG5192 169 VVTHLDLFKNPS 180 (1077)
T ss_pred EEeecccccChH
Confidence 999999987554
No 341
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00015 Score=76.03 Aligned_cols=133 Identities=18% Similarity=0.299 Sum_probs=78.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
.-.++++|.-.+|||+|+..|.+... |.... +.+..++-++.. + .+.+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~-----~~e~~lrytD~l-----------------~--------~E~e- 175 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFSK-----NTEADLRYTDTL-----------------F--------YEQE- 175 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-ccccc-----cccccccccccc-----------------h--------hhHh-
Confidence 34689999999999999999999874 44322 111112111100 0 0111
Q ss_pred hcCCCCCcCCCcEEEEeec--CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 118 VTGKTKQISPIPIHLSIYS--PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~--~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
++-.+...++.+-+.. ....-++++||||.... .+-+...++-+|.++|+|..+. +..-.
T Consensus 176 ---Rg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF-------------~DE~ta~l~~sDgvVlvvDv~E-GVmln- 237 (971)
T KOG0468|consen 176 ---RGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF-------------SDETTASLRLSDGVVLVVDVAE-GVMLN- 237 (971)
T ss_pred ---cCceEeecceEEEEecCcCceeeeeeecCCCcccc-------------hHHHHHHhhhcceEEEEEEccc-Cceee-
Confidence 1122333444444433 23367889999998763 2223344566787777765544 33222
Q ss_pred HHHHHHHhCCCCCceEEEeccCccc
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
.-++++..-.+..++++|+||+|.+
T Consensus 238 tEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 238 TERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHHHHHHHHhccCcEEEEEehhHHH
Confidence 2235666666789999999999975
No 342
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=1.3e-05 Score=69.47 Aligned_cols=99 Identities=12% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHH---HHHHhCC----CCCceEE
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK---LAREVDP----TGERTFG 212 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~---l~~~~d~----~~~rti~ 212 (467)
.+|.++||.|-.+ ++.++..|.+++=..+|...-.+ .+..+. ++.++.. ...-+++
T Consensus 67 ihLQlWDTAGQER-------------FRSLTTAFfRDAMGFlLiFDlT~----eqSFLnvrnWlSQL~~hAYcE~PDivl 129 (219)
T KOG0081|consen 67 IHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTS----EQSFLNVRNWLSQLQTHAYCENPDIVL 129 (219)
T ss_pred EEEeeeccccHHH-------------HHHHHHHHHHhhccceEEEeccc----hHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 5789999999654 78899999998876665543222 112222 2233321 2456788
Q ss_pred EeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 213 VLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 213 VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
+-||+|+.+......+.......+.+++|+..++-.+.+++..
T Consensus 130 cGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~ka 172 (219)
T KOG0081|consen 130 CGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKA 172 (219)
T ss_pred EcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHH
Confidence 8999999876543323222234456788998777666554433
No 343
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=5.7e-05 Score=66.71 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=66.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHH--HHHHHHHhCCCCCceEEEec
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSD--AMKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~~--~l~l~~~~d~~~~rti~Vlt 215 (467)
...+.|||+-|--. .+++...|...+++||.++++.+.+ +..+. .-.+...-.-.|.|.+..+|
T Consensus 68 ~~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 46889999999643 5899999999999777766555422 21111 11233333446899999999
Q ss_pred cCcccCCCCc--HHHHhc-Cccc-ccCCCeEEEEeCChhhhccCccHHHHH
Q 012279 216 KLDLMDKGTN--ALDVLE-GRSY-RLQHPWVGIVNRSQADINRNIDMIVAR 262 (467)
Q Consensus 216 K~D~~~~~~~--~~~~l~-~~~~-~l~lg~~~V~~~s~~~~~~~~~~~~~~ 262 (467)
|-|+-+.-+. ...+.. .+.. .-...+-+|....++++++++.+....
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~ 185 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKK 185 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHH
Confidence 9998764331 111111 1111 122445566666666666666665543
No 344
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00022 Score=71.74 Aligned_cols=136 Identities=19% Similarity=0.290 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh--CCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV--GRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~--G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
.....++|-.|-||||||-|.|+ |.-+ +..|.+..+ ++. + ....+|.+-+
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~r-------k~~---------------~----~a~SDWM~iE 62 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGR-------KSG---------------K----HAKSDWMEIE 62 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchh--hhcceeeec-------cCC---------------c----ccccHHHHHH
Confidence 44578999999999999999998 2211 111221111 000 0 0111232222
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.+ .++|-..-.+. +.....-+.|.||||.-+- .+-+++.+.-.|+.++++..| .++ ..
T Consensus 63 kq------RGISVtsSVMq-F~Y~~~~iNLLDTPGHeDF-------------SEDTYRtLtAvDsAvMVIDaA-KGi-E~ 120 (528)
T COG4108 63 KQ------RGISVTSSVMQ-FDYADCLVNLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDAA-KGI-EP 120 (528)
T ss_pred Hh------cCceEEeeEEE-eccCCeEEeccCCCCcccc-------------chhHHHHHHhhheeeEEEecc-cCc-cH
Confidence 22 22332222222 2334568899999998663 333556666778777766655 455 34
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..++|..-..-.+.|++=.+||+|.-..
T Consensus 121 qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 121 QTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred HHHHHHHHHhhcCCceEEEeeccccccC
Confidence 4677887777789999999999997643
No 345
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.0002 Score=74.23 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=49.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
.++.||||||-.... ....+.+..+. . +..++.++| |+++... +++...++.+...-..+-+|+||.|.
T Consensus 176 ~DvVIIDTAGr~~~d-----~~lm~El~~l~-~-~~~pdevlL-Vvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALE-----EDLIEEMKEIK-E-AVKPDEVLL-VIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHHH-H-HhcccceeE-EEecccc---HHHHHHHHHHHhcCCCCEEEEecccC
Confidence 389999999976531 22222222221 1 335664554 5556553 56777777766533445678999999
Q ss_pred cCCCCcHHHHhc
Q 012279 220 MDKGTNALDVLE 231 (467)
Q Consensus 220 ~~~~~~~~~~l~ 231 (467)
...+..+..+..
T Consensus 245 ~a~~G~~ls~~~ 256 (437)
T PRK00771 245 TAKGGGALSAVA 256 (437)
T ss_pred CCcccHHHHHHH
Confidence 888877776643
No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.63 E-value=0.00091 Score=67.52 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=92.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCC-------CchhHhhhcCCCCcccChHHHHHH
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDG-------SQEYAEFLHLPKRRFTDFSMVRKE 110 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~ 110 (467)
-..|++||+.|+||||.|--|..+.++--+. -.+.+...+.- -..|+..+..+-.-..++.++..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-------~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-------KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-------cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH
Confidence 4468999999999999999988764311110 01111111111 145677777776666777777666
Q ss_pred HHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC-CeEEEEEecCCc
Q 012279 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP-NSVILAISPANQ 189 (467)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~-~~iIL~V~~a~~ 189 (467)
+.... ..+++||||-|-.... ...+.+ ...|+... +.-+.+|.+++.
T Consensus 276 i~~l~-----------------------~~d~ILVDTaGrs~~D--------~~~i~e-l~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 276 IEALR-----------------------DCDVILVDTAGRSQYD--------KEKIEE-LKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred HHHhh-----------------------cCCEEEEeCCCCCccC--------HHHHHH-HHHHHhccccceEEEEEecCc
Confidence 64333 2489999999976532 122222 33444433 334566777775
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhc
Q 012279 190 DIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (467)
Q Consensus 190 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 231 (467)
. ..+...+...+...+... +++||.|-...-++..+++.
T Consensus 324 K--~~dlkei~~~f~~~~i~~-~I~TKlDET~s~G~~~s~~~ 362 (407)
T COG1419 324 K--YEDLKEIIKQFSLFPIDG-LIFTKLDETTSLGNLFSLMY 362 (407)
T ss_pred c--hHHHHHHHHHhccCCcce-eEEEcccccCchhHHHHHHH
Confidence 3 344455667776655554 46899998877667777654
No 347
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=3.4e-05 Score=79.97 Aligned_cols=101 Identities=17% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--------cHHHHHHHHHhCCCCC
Q 012279 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--------TSDAMKLAREVDPTGE 208 (467)
Q Consensus 137 ~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~--------~~~~l~l~~~~d~~~~ 208 (467)
++...+||+|.||.-.- +.+|+.. +..+|..||||+.....++ +.+-..+++.+. -.
T Consensus 252 s~~~~~tliDaPGhkdF------------i~nmi~g-~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~ 316 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDF------------IPNMISG-ASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--IS 316 (603)
T ss_pred cCceeEEEecCCCcccc------------chhhhcc-ccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cc
Confidence 56689999999994331 2333322 3456767777654332221 222233444443 35
Q ss_pred ceEEEeccCcccCCCCcHHHHhcCcc---------cc-cCCCeEEEEeCChhhh
Q 012279 209 RTFGVLTKLDLMDKGTNALDVLEGRS---------YR-LQHPWVGIVNRSQADI 252 (467)
Q Consensus 209 rti~VltK~D~~~~~~~~~~~l~~~~---------~~-l~lg~~~V~~~s~~~~ 252 (467)
..|+++||+|+++=..+-.+.+.+.. +. -...|+++...++.++
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENL 370 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcc
Confidence 68888999999965444333322221 11 1246777777766554
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00085 Score=68.49 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
..++.||||||.... +.. .+.++ .+++. .++.-+++|.+|+.+ ..+..+........ ..+=+|+||
T Consensus 254 ~~DlVLIDTaGr~~~-------~~~-~l~el-~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-~~~~~I~TK 321 (388)
T PRK12723 254 DFDLVLVDTIGKSPK-------DFM-KLAEM-KELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTK 321 (388)
T ss_pred CCCEEEEcCCCCCcc-------CHH-HHHHH-HHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEe
Confidence 368999999997642 111 12222 22222 123235556677664 33334455555443 244578999
Q ss_pred CcccCCCCcHHHHhc
Q 012279 217 LDLMDKGTNALDVLE 231 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~ 231 (467)
.|-....+.+.++..
T Consensus 322 lDet~~~G~~l~~~~ 336 (388)
T PRK12723 322 LDETTCVGNLISLIY 336 (388)
T ss_pred ccCCCcchHHHHHHH
Confidence 999988887777754
No 349
>PRK10867 signal recognition particle protein; Provisional
Probab=97.63 E-value=0.00083 Score=69.50 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=49.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.||||||-.... ....+.+..+. ..+ .++.+ ++|+++.. .+++...++.+...-..+-+|+||.|
T Consensus 183 ~~DvVIIDTaGrl~~d-----~~lm~eL~~i~-~~v-~p~ev-llVlda~~---gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHID-----EELMDELKAIK-AAV-NPDEI-LLVVDAMT---GQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCcccC-----HHHHHHHHHHH-Hhh-CCCeE-EEEEeccc---HHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4689999999976521 12222222222 223 45645 45555543 46777777777654345677899999
Q ss_pred ccCCCCcHHHHh
Q 012279 219 LMDKGTNALDVL 230 (467)
Q Consensus 219 ~~~~~~~~~~~l 230 (467)
....+..+..+.
T Consensus 252 ~~~rgG~alsi~ 263 (433)
T PRK10867 252 GDARGGAALSIR 263 (433)
T ss_pred CcccccHHHHHH
Confidence 877666666554
No 350
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.61 E-value=0.00014 Score=65.76 Aligned_cols=80 Identities=26% Similarity=0.408 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.++|+||..... ......+..+. . ...++.+++++ ++.. ..+.++.+..+.....-.-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~-~-~~~~~~~~lVv-~~~~---~~~~~~~~~~~~~~~~~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKIK-R-VVKPDEVLLVV-DAMT---GQDAVNQAKAFNEALGITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHHH-h-hcCCCeEEEEE-ECCC---ChHHHHHHHHHHhhCCCCEEEEECCc
Confidence 4688999999986421 11222222221 1 23466555555 4543 33445555555322225678899999
Q ss_pred ccCCCCcHHHH
Q 012279 219 LMDKGTNALDV 229 (467)
Q Consensus 219 ~~~~~~~~~~~ 229 (467)
.........++
T Consensus 151 ~~~~~g~~~~~ 161 (173)
T cd03115 151 GDARGGAALSI 161 (173)
T ss_pred CCCCcchhhhh
Confidence 98877665554
No 351
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.60 E-value=0.0005 Score=63.86 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.++|||||+++++++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999975
No 352
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.59 E-value=0.00073 Score=78.76 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCccc
Q 012279 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (467)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~ 67 (467)
.+..+-.+++++...+....... ..-.-.+|-.+|+|+++|||||+|+.- |..| |-.
T Consensus 82 ~~~~l~~~~~~a~~~Lk~~~~~~---~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 82 EIRELRARFNEALALLKRSRLGG---RRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHHhhccccC---chhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 44557778888888886543211 111248999999999999999999997 8774 544
No 353
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.58 E-value=0.00019 Score=69.45 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.-+.+.|||-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 56789999999999999999987544
No 354
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.0004 Score=73.75 Aligned_cols=130 Identities=18% Similarity=0.279 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.-|.++|+|..-+|||-||..|-|.++---..|..|... +..+.....|+........
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqI----------------------gAt~fp~~ni~e~tk~~~~ 531 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQI----------------------GATYFPAENIREKTKELKK 531 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeec----------------------cccccchHHHHHHHHHHHh
Confidence 679999999999999999999999876333233322211 2223333333332222111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-- 194 (467)
. + + ..-..|.+.+|||||.-+ +.++-.+....+|-+||+| +--.++..+
T Consensus 532 ~--~--K-----------~~~kvPg~lvIdtpghEs-------------FtnlRsrgsslC~~aIlvv-dImhGlepqti 582 (1064)
T KOG1144|consen 532 D--A--K-----------KRLKVPGLLVIDTPGHES-------------FTNLRSRGSSLCDLAILVV-DIMHGLEPQTI 582 (1064)
T ss_pred h--h--h-----------hhcCCCeeEEecCCCchh-------------hhhhhhccccccceEEEEe-ehhccCCcchh
Confidence 1 1 0 112468899999999654 5666677778889666665 444444433
Q ss_pred HHHHHHHHhCCCCCceEEEeccCccc
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
+.+.+++ ....+.|+.|||+|.+
T Consensus 583 ESi~lLR---~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 ESINLLR---MRKTPFIVALNKIDRL 605 (1064)
T ss_pred HHHHHHH---hcCCCeEEeehhhhhh
Confidence 3444444 4578999999999987
No 355
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00017 Score=61.74 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=52.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---HHHHHHHHHhCCCCCceEEEe
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---SDAMKLAREVDPTGERTFGVL 214 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~Vl 214 (467)
......++|+-|-.+ ++-..+.|..+.+++|.+|.+++.|-.. ..-..++++-.-.+...+++.
T Consensus 60 KNLk~~vwdLggqtS-------------irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTS-------------IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCccc-------------ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 446789999999887 5778999999999999999888875322 222223333333467788889
Q ss_pred ccCcccCCC
Q 012279 215 TKLDLMDKG 223 (467)
Q Consensus 215 tK~D~~~~~ 223 (467)
||.|....-
T Consensus 127 nKqD~~~~~ 135 (182)
T KOG0072|consen 127 NKQDYSGAL 135 (182)
T ss_pred ccccchhhh
Confidence 999976543
No 356
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.50 E-value=0.0024 Score=59.66 Aligned_cols=85 Identities=26% Similarity=0.462 Sum_probs=50.5
Q ss_pred CCcEEEeC-CCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH-HHHHHHhCCCC-CceEEEecc
Q 012279 140 VNLTLIDL-PGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA-MKLAREVDPTG-ERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDt-PGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~-l~l~~~~d~~~-~rti~VltK 216 (467)
.++++||| .|+ +..-+.-++..|.+|++|.|....+.++.- -+++.++ | +|+.+|+||
T Consensus 134 ~e~VivDtEAGi----------------EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~el---g~k~i~~V~NK 194 (255)
T COG3640 134 YEVVIVDTEAGI----------------EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEEL---GIKRIFVVLNK 194 (255)
T ss_pred CcEEEEecccch----------------hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHh---CCceEEEEEee
Confidence 46778887 554 444555677888666666665444433332 2233333 5 899999999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCCh
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ 249 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~ 249 (467)
+|... ..+......+++.+.++++.+.
T Consensus 195 v~e~e------~~~~~~~~~~~~~vlg~iP~d~ 221 (255)
T COG3640 195 VDEEE------ELLRELAEELGLEVLGVIPYDP 221 (255)
T ss_pred ccchh------HHHHhhhhccCCeEEEEccCCH
Confidence 99651 1122223445566667777665
No 357
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00048 Score=65.99 Aligned_cols=131 Identities=18% Similarity=0.327 Sum_probs=80.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
-.|..||...-|||||.-||++.- .-.+ .....+++++.+..++.
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~l-a~~~------------------------------~~~~~~y~~id~aPeEk---- 57 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVL-AKKG------------------------------GAEAKAYDQIDNAPEEK---- 57 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHH-Hhhc------------------------------cccccchhhhccCchHh----
Confidence 358999999999999999999741 1111 11222333333332211
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-ccHHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAM 197 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~-~~~~~l 197 (467)
..++.-++-+++....+ .+...||.||.-+ .+++|+....+- |..||+|..+.... .+.+-+
T Consensus 58 ---~rGITIntahveyet~~-rhyahVDcPGHaD------------YvKNMItgAaqm-DgAILVVsA~dGpmPqTrEHi 120 (394)
T COG0050 58 ---ARGITINTAHVEYETAN-RHYAHVDCPGHAD------------YVKNMITGAAQM-DGAILVVAATDGPMPQTREHI 120 (394)
T ss_pred ---hcCceeccceeEEecCC-ceEEeccCCChHH------------HHHHHhhhHHhc-CccEEEEEcCCCCCCcchhhh
Confidence 12344444555554444 6889999999643 367777666554 55778776655433 234445
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCC
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
-+++++.- .+++.++||+|+++..
T Consensus 121 LlarqvGv--p~ivvflnK~Dmvdd~ 144 (394)
T COG0050 121 LLARQVGV--PYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhhcCC--cEEEEEEecccccCcH
Confidence 57777732 4678889999999843
No 358
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.42 E-value=0.00053 Score=69.73 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=77.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
......+|-.---|||||-..|+... +..+.+ +.+++.-+.++
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~R-------------------------------em~~Q~LDsMd 50 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSER-------------------------------EMRAQVLDSMD 50 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcChH-------------------------------HHHHHhhhhhh
Confidence 34456788888999999999998654 222211 22222222232
Q ss_pred hhcCCCCCcCCCcEEEEeecC--CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~--~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
-...++-.+....+++..... +...+.||||||..+.+. ++.+ .+.-+...+|+| +|.+++..+
T Consensus 51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY------------EVSR-SLAACEGalLvV-DAsQGveAQ 116 (603)
T COG0481 51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSY------------EVSR-SLAACEGALLVV-DASQGVEAQ 116 (603)
T ss_pred hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEE------------Eehh-hHhhCCCcEEEE-ECccchHHH
Confidence 222222334445555554433 457899999999887542 2222 233455555554 677777554
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.....-..+ .++--+|-|+||+|+-...
T Consensus 117 TlAN~YlAl-e~~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 117 TLANVYLAL-ENNLEIIPVLNKIDLPAAD 144 (603)
T ss_pred HHHHHHHHH-HcCcEEEEeeecccCCCCC
Confidence 432222222 2467799999999997544
No 359
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00051 Score=60.37 Aligned_cols=119 Identities=16% Similarity=0.272 Sum_probs=75.8
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 34 ~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
++.+...+++.|--|||||||++-|=..+. +.-.+|--|+
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPT------------------------------------- 55 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPT------------------------------------- 55 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCC-------------------------------------
Confidence 345777899999999999999999876543 1123344442
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
.+. +.| .....+-+|+-|-.. .+...++|+...|+|+..|+.+....-.
T Consensus 56 -SE~--------------l~I---g~m~ftt~DLGGH~q-------------Arr~wkdyf~~v~~iv~lvda~d~er~~ 104 (193)
T KOG0077|consen 56 -SEE--------------LSI---GGMTFTTFDLGGHLQ-------------ARRVWKDYFPQVDAIVYLVDAYDQERFA 104 (193)
T ss_pred -hHH--------------hee---cCceEEEEccccHHH-------------HHHHHHHHHhhhceeEeeeehhhHHHhH
Confidence 000 011 235778899999754 5788999999999888877766542211
Q ss_pred --HHHHHHHHH-hCCCCCceEEEeccCcccCCC
Q 012279 194 --SDAMKLARE-VDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 --~~~l~l~~~-~d~~~~rti~VltK~D~~~~~ 223 (467)
...++..-. ..-...|.++..||+|.-..-
T Consensus 105 es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 105 ESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 111111111 111357899999999987544
No 360
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.41 E-value=0.00014 Score=72.45 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=26.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccc
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~ 68 (467)
--++.|||-||+|||||||+|..+..-|+|.
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 3479999999999999999999888655554
No 361
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.0012 Score=68.90 Aligned_cols=81 Identities=23% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
.+..+|||+|..... ....+.. .+...... +.- .++|.+++.+ ..+..+.++.+... ..+-+|+||.|.
T Consensus 335 ~d~VLIDTaGr~~~d-----~~~~e~~-~~l~~~~~-p~e-~~LVLdAt~~--~~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRD-----RMVSEQI-AMLHGAGA-PVK-RLLLLNATSH--GDTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhh-----HHHHHHH-HHHhccCC-CCe-eEEEEeCCCc--HHHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 478999999976421 0111111 11111111 232 3455566553 23344466666654 355678999999
Q ss_pred cCCCCcHHHHhc
Q 012279 220 MDKGTNALDVLE 231 (467)
Q Consensus 220 ~~~~~~~~~~l~ 231 (467)
......+.+++.
T Consensus 404 t~~~G~~l~i~~ 415 (484)
T PRK06995 404 AASLGGALDVVI 415 (484)
T ss_pred cccchHHHHHHH
Confidence 888877777754
No 362
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.38 E-value=0.0009 Score=62.50 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 363
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0007 Score=64.30 Aligned_cols=134 Identities=21% Similarity=0.313 Sum_probs=78.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
..|..||..+-|||||++.|.+..| ++.+++..--.+.++.. +
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~-------------------------------T--- 85 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN-------------------------------T--- 85 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc-------------------------------h---
Confidence 4699999999999999999999886 22333332111111100 0
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCC-CccHHHHHHHHHHHhhcC---------------CCeEEE
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQ-PDTIVEDIESMVRSYVEK---------------PNSVIL 182 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q-~~~~~~~i~~~~~~yi~~---------------~~~iIL 182 (467)
...- .+.-...|++|||-|+.+--.++. -+-+.+.+......|++. -++.+.
T Consensus 86 ----yelq--------EsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLY 153 (406)
T KOG3859|consen 86 ----YELQ--------ESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLY 153 (406)
T ss_pred ----hhhh--------hcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 0000 011125789999999987432222 233555555555555432 234455
Q ss_pred EEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 183 ~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
++.|....+. +-.+-..+.+|. ...+|-|+-|+|.+...
T Consensus 154 FI~PTGH~LK-slDLvtmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 154 FISPTGHSLK-SLDLVTMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred EecCCCcchh-HHHHHHHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 5666665553 333335677775 57889999999988654
No 364
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.34 E-value=0.0017 Score=67.17 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=49.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.||||||.... .....+.+..+.. .-+++.++|++ ++.. .+++...++.+...-.-+=+|+||.|
T Consensus 182 ~~DvVIIDTaGr~~~-----d~~l~~eL~~i~~--~~~p~e~lLVv-da~t---gq~~~~~a~~f~~~v~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI-----DEELMEELAAIKE--ILNPDEILLVV-DAMT---GQDAVNTAKTFNERLGLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCcccc-----CHHHHHHHHHHHH--hhCCceEEEEE-eccc---hHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 468999999997642 1222233333222 33566555554 5553 46777778777643345567799999
Q ss_pred ccCCCCcHHHHh
Q 012279 219 LMDKGTNALDVL 230 (467)
Q Consensus 219 ~~~~~~~~~~~l 230 (467)
....+..+..+.
T Consensus 251 ~~~~~G~~lsi~ 262 (428)
T TIGR00959 251 GDARGGAALSVR 262 (428)
T ss_pred CcccccHHHHHH
Confidence 776666666554
No 365
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00086 Score=67.87 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC-CceEEEeccCc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGVLTKLD 218 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~-~rti~VltK~D 218 (467)
..++|||.||.-+ .+.+|+.. +.-.|+.+| |++++.++..+ ..+.+.-+|-.| .+-++|+||+|
T Consensus 50 ~~~~fIDvpgh~~------------~i~~miag-~~~~d~alL-vV~~deGl~~q-tgEhL~iLdllgi~~giivltk~D 114 (447)
T COG3276 50 GVMGFIDVPGHPD------------FISNLLAG-LGGIDYALL-VVAADEGLMAQ-TGEHLLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred CceEEeeCCCcHH------------HHHHHHhh-hcCCceEEE-EEeCccCcchh-hHHHHHHHHhcCCCceEEEEeccc
Confidence 4899999999743 24444432 223454444 55666544222 233344445445 45599999999
Q ss_pred ccCCCCc---HHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHH
Q 012279 219 LMDKGTN---ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (467)
Q Consensus 219 ~~~~~~~---~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~ 263 (467)
..++... ..+++.... .-...++.+...+.++++++...+....
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 9975421 123333222 1123445566666666665555544443
No 366
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.32 E-value=0.00048 Score=59.84 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
-.+||+.|.--+|||||+=..+...|- |-. +..++..
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn------~kH------------------------------lsTlQAS------- 49 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN------CKH------------------------------LSTLQAS------- 49 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc------hhh------------------------------HHHHHHH-------
Confidence 457999999999999999988877761 100 0011110
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
|-...+. +.+ ...+|.|+||.|-.+ +..+---|.+.+|.++|+..-...| +-+...
T Consensus 50 -------F~~kk~n--~ed-~ra~L~IWDTAGQEr-------------fHALGPIYYRgSnGalLVyDITDrd-SFqKVK 105 (218)
T KOG0088|consen 50 -------FQNKKVN--VED-CRADLHIWDTAGQER-------------FHALGPIYYRGSNGALLVYDITDRD-SFQKVK 105 (218)
T ss_pred -------Hhhcccc--ccc-ceeeeeeeeccchHh-------------hhccCceEEeCCCceEEEEeccchH-HHHHHH
Confidence 1111111 222 346899999999755 4455556888999877775432222 122233
Q ss_pred HHHHHhC---CCCCceEEEeccCcccCCC
Q 012279 198 KLAREVD---PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 198 ~l~~~~d---~~~~rti~VltK~D~~~~~ 223 (467)
.+.+++. ....-.++|-||+|+-+..
T Consensus 106 nWV~Elr~mlGnei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 106 NWVLELRTMLGNEIELLIVGNKIDLEEER 134 (218)
T ss_pred HHHHHHHHHhCCeeEEEEecCcccHHHhh
Confidence 3444443 3445678899999987544
No 367
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.27 E-value=0.00039 Score=65.47 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=63.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
--.++.+||-||+||||++..|+|.. -|..++.-|...+
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~---------------------------------------- 96 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTT---------------------------------------- 96 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCC-CccccccceeEEE----------------------------------------
Confidence 34478899999999999999999975 3444433222110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+.| +.....+.+.+.|+||++..+..+... ..+ +....+.++ +|++|.++...+.-...
T Consensus 97 -vpG-------------~~~y~gaKiqlldlpgiiegakdgkgr--g~q----viavartcn-li~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 97 -VPG-------------VIRYKGAKIQLLDLPGIIEGAKDGKGR--GKQ----VIAVARTCN-LIFIVLDVLKPLSHKKI 155 (358)
T ss_pred -ecc-------------eEeccccceeeecCcchhcccccCCCC--ccE----EEEEeeccc-EEEEEeeccCcccHHHH
Confidence 112 222345789999999999877554222 111 222234556 66777777766543332
Q ss_pred HHHHHHhCCCC
Q 012279 197 MKLAREVDPTG 207 (467)
Q Consensus 197 l~l~~~~d~~~ 207 (467)
+-+++...|
T Consensus 156 --ie~eleg~g 164 (358)
T KOG1487|consen 156 --IEKELEGFG 164 (358)
T ss_pred --HHHhhhcce
Confidence 334454433
No 368
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00018 Score=70.85 Aligned_cols=180 Identities=26% Similarity=0.357 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHHHhccCCCC--------C--C---cccccccCCC--------eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 5 ESLIGLVNRIQRACTMLGDYGGG--------D--N---AFSSLWEALP--------SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~--------~--~---~l~~~~~~lP--------~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+++..-+..|.....++|..... . . ..+-+..+.| +++|+|.-.+|||||+--|+.-.
T Consensus 113 eemnaSL~TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQge- 191 (591)
T KOG1143|consen 113 EEMNASLRTLRTMAQALGASMVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGE- 191 (591)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeeccc-
Confidence 44555666777777777754321 1 0 1112333444 69999999999999999999765
Q ss_pred Ccccccc----cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH-hhhcCCCCCcCCCcEEEEeecCC
Q 012279 64 LPRGSGI----VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET-DRVTGKTKQISPIPIHLSIYSPN 138 (467)
Q Consensus 64 lP~~~~~----~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~-~~~~g~~~~~s~~~i~l~i~~~~ 138 (467)
|-.|.|- .-|.|.||+..++..-+.+...|. +...+-+..+..+ +.+ ....
T Consensus 192 LDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd--------~~g~vVNY~~~~taEEi----------------~e~S 247 (591)
T KOG1143|consen 192 LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFD--------NRGKVVNYAQNMTAEEI----------------VEKS 247 (591)
T ss_pred ccCCCCeeeeehhcchhhhccCcccccchhccccc--------ccccccchhhcccHHHH----------------Hhhh
Confidence 5555553 346777777666544333322221 1112222222111 111 1122
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--cccHHHHHHHHHhCCCCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d--~~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
..-+||+|+.|-.+... .. +..+ ..| .|++..|+| +|+.+ +.+.+-+-++..+ ..|.++++||
T Consensus 248 SKlvTfiDLAGh~kY~~----TT----i~gL-tgY--~Ph~A~LvV-sA~~Gi~~tTrEHLgl~~AL---~iPfFvlvtK 312 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQK----TT----IHGL-TGY--TPHFACLVV-SADRGITWTTREHLGLIAAL---NIPFFVLVTK 312 (591)
T ss_pred cceEEEeecccchhhhe----ee----eeec-ccC--CCceEEEEE-EcCCCCccccHHHHHHHHHh---CCCeEEEEEe
Confidence 34679999999765321 00 1111 122 356555554 45553 4566667777666 4789999999
Q ss_pred CcccCCCC
Q 012279 217 LDLMDKGT 224 (467)
Q Consensus 217 ~D~~~~~~ 224 (467)
+|+.++.+
T Consensus 313 ~Dl~~~~~ 320 (591)
T KOG1143|consen 313 MDLVDRQG 320 (591)
T ss_pred eccccchh
Confidence 99998754
No 369
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0021 Score=63.97 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=48.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
+..++.||||-|=.+ |.+++-+.+.+ +.+.++ ||.+ ++|.+|+.+ +.+...++.+...-.-+=++|||.
T Consensus 182 e~fdvIIvDTSGRh~-----qe~sLfeEM~~-v~~ai~-Pd~v-i~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK-----QEASLFEEMKQ-VSKAIK-PDEI-IFVMDASIG---QAAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred cCCcEEEEeCCCchh-----hhHHHHHHHHH-HHhhcC-CCeE-EEEEecccc---HhHHHHHHHHHHhhccceEEEEec
Confidence 457999999999765 23333333322 334444 5644 455566653 344445555554444456789999
Q ss_pred cccCCCCcHHHHh
Q 012279 218 DLMDKGTNALDVL 230 (467)
Q Consensus 218 D~~~~~~~~~~~l 230 (467)
|-..++.-++..+
T Consensus 251 DGhakGGgAlSaV 263 (483)
T KOG0780|consen 251 DGHAKGGGALSAV 263 (483)
T ss_pred ccCCCCCceeeeh
Confidence 9888776655443
No 370
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0053 Score=60.51 Aligned_cols=147 Identities=18% Similarity=0.270 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCC------CcccChHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPK------RRFTDFSMVRKE 110 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~ 110 (467)
.+.+.+-+|+---|||||+-.|+--.- .+ .++-...++... ..-.||.-+-+-
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk-----~i----------------~eDQla~l~~dS~~~~t~g~~~D~ALLvDG 63 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTK-----AI----------------YEDQLASLERDSKRKGTQGEKIDLALLVDG 63 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcch-----hh----------------hHHHHHHHhcccccccCCCCccchhhhhhh
Confidence 567899999999999999999985321 00 011111222211 233466666665
Q ss_pred HHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc
Q 012279 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD 190 (467)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d 190 (467)
++.+.+ .| +.-+.-+ ..++.......+.||||...- .++|+.. ..-+|..||+| +|..+
T Consensus 64 L~AERE--QG----ITIDVAY-RyFsT~KRkFIiADTPGHeQY------------TRNMaTG-ASTadlAIlLV-DAR~G 122 (431)
T COG2895 64 LEAERE--QG----ITIDVAY-RYFSTEKRKFIIADTPGHEQY------------TRNMATG-ASTADLAILLV-DARKG 122 (431)
T ss_pred hHHHHh--cC----ceEEEEe-eecccccceEEEecCCcHHHH------------hhhhhcc-cccccEEEEEE-ecchh
Confidence 554443 34 3323222 234445578999999996431 2444432 23456566655 55555
Q ss_pred cccHHH--HHHHHHhCCCCCc-eEEEeccCcccCCCCcHHH
Q 012279 191 IATSDA--MKLAREVDPTGER-TFGVLTKLDLMDKGTNALD 228 (467)
Q Consensus 191 ~~~~~~--l~l~~~~d~~~~r-ti~VltK~D~~~~~~~~~~ 228 (467)
+-.+.- ..++..+ |.| +++.+||+|+++-.++..+
T Consensus 123 vl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 123 VLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred hHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHHHHH
Confidence 433321 2233333 555 5556999999987765433
No 371
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0077 Score=61.23 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=52.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHH-HhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~-~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
..++.||||.|=... .+ +.+.++.. +-+-+||-++|++ +|.. -+++...|+.++..-.=|=+|+||.
T Consensus 182 ~~DvvIvDTAGRl~i-----de---~Lm~El~~Ik~~~~P~E~llVv-Dam~---GQdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI-----DE---ELMDELKEIKEVINPDETLLVV-DAMI---GQDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc-----cH---HHHHHHHHHHhhcCCCeEEEEE-eccc---chHHHHHHHHHhhhcCCceEEEEcc
Confidence 468999999997653 22 22333322 2244666555555 4443 6788899999887666667889999
Q ss_pred cccCCCCcHHHH
Q 012279 218 DLMDKGTNALDV 229 (467)
Q Consensus 218 D~~~~~~~~~~~ 229 (467)
|--.++.-+..+
T Consensus 250 DGdaRGGaALS~ 261 (451)
T COG0541 250 DGDARGGAALSA 261 (451)
T ss_pred cCCCcchHHHhh
Confidence 988777766554
No 372
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.94 E-value=0.0014 Score=72.55 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=19.7
Q ss_pred ECCCCCcHHHHHHHhhCCCCCcc
Q 012279 44 VGGQSSGKSSVLESVVGRDFLPR 66 (467)
Q Consensus 44 vG~~ssGKSSllnaL~G~~~lP~ 66 (467)
+|.||+|||||||.|.|..| ++
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~ 22 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DV 22 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cc
Confidence 59999999999999999986 44
No 373
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.91 E-value=0.0015 Score=67.35 Aligned_cols=27 Identities=48% Similarity=0.758 Sum_probs=24.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
+--.|+|+|+||+|||||||.|.|.+|
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccCh
Confidence 455799999999999999999999987
No 374
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0024 Score=68.33 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=77.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccc-cccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T-r~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....|++|-.---|||||..+|+-.+ |..+ |-+=.+++ -|.-+ .+++
T Consensus 8 ~irn~~~vahvdhgktsladsl~asn------gvis~rlagkirf---------------------ld~re-----deq~ 55 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASN------GVISSRLAGKIRF---------------------LDTRE-----DEQT 55 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhc------cEechhhccceee---------------------ccccc-----hhhh
Confidence 45679999999999999999998655 3322 22211111 11111 0112
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
..++-+..++| + + ....-+.|||+||..+. ...+.....-+|. .|+.+++..++. +.
T Consensus 56 rgitmkss~is-----~-~--~~~~~~nlidspghvdf-------------~sevssas~l~d~-alvlvdvvegv~-~q 112 (887)
T KOG0467|consen 56 RGITMKSSAIS-----L-L--HKDYLINLIDSPGHVDF-------------SSEVSSASRLSDG-ALVLVDVVEGVC-SQ 112 (887)
T ss_pred hceeeeccccc-----c-c--cCceEEEEecCCCccch-------------hhhhhhhhhhcCC-cEEEEeeccccc-hh
Confidence 22222222333 1 1 13357889999998873 3445555555663 445556777774 44
Q ss_pred HHHHHHHhCCCCCceEEEeccCcc
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
...++|+.--.|.+.+.|+||+|.
T Consensus 113 t~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 113 TYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHHHHHHHccCceEEEEehhhh
Confidence 555788777778999999999994
No 375
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.85 E-value=0.00063 Score=62.35 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=66.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
-++||||+-.+|||++|-+.+-.. ||... .||..
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~y-----vPTVF---------------------------------------- 38 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNA-FPEEY-----VPTVF---------------------------------------- 38 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCc-Ccccc-----cCeEE----------------------------------------
Confidence 368999999999999999998765 45443 23211
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCc-ccc--cHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA--TSD 195 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~-d~~--~~~ 195 (467)
......+.+.......|.|+||.|-.+-. .++-+ ...++|.++++..-.+. .+. .+.
T Consensus 39 -------dnys~~v~V~dg~~v~L~LwDTAGqedYD----------rlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 39 -------DNYSANVTVDDGKPVELGLWDTAGQEDYD----------RLRPL---SYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred -------ccceEEEEecCCCEEEEeeeecCCCcccc----------ccccc---CCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 11112233322233568999999976521 12322 34566755554322111 111 112
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
++--.+...| +.|+|+|.||.|+.+.
T Consensus 99 W~pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 99 WIPEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred hhHHHHhhCC-CCCEEEEeehHHhhhC
Confidence 2223333344 6999999999999843
No 376
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.84 E-value=0.0018 Score=64.00 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=44.8
Q ss_pred EEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCC
Q 012279 132 LSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDIA--TSDAMKLAREVDPTGE 208 (467)
Q Consensus 132 l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~~iIL~V~~a~~d~~--~~~~l~l~~~~d~~~~ 208 (467)
++|+.....-+||||+.|..+.- ...+...-- -+| .-++.+-+|..+. +.+-+-+|-.+ ..
T Consensus 211 vkIce~saKviTFIDLAGHEkYL------------KTTvFGMTGH~PD-f~MLMiGaNaGIiGmTKEHLgLALaL---~V 274 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYL------------KTTVFGMTGHMPD-FTMLMIGANAGIIGMTKEHLGLALAL---HV 274 (641)
T ss_pred eeeccccceeEEEEeccchhhhh------------heeeeccccCCCC-ceEEEecccccceeccHHhhhhhhhh---cC
Confidence 45666666789999999975421 111111111 244 4444556666442 44445454443 58
Q ss_pred ceEEEeccCcccCC
Q 012279 209 RTFGVLTKLDLMDK 222 (467)
Q Consensus 209 rti~VltK~D~~~~ 222 (467)
|+++|+||+|+.+.
T Consensus 275 PVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 275 PVFVVVTKIDMCPA 288 (641)
T ss_pred cEEEEEEeeccCcH
Confidence 99999999998864
No 377
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.01 Score=58.19 Aligned_cols=67 Identities=16% Similarity=0.400 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCC--eEEEEEecCCcccccHHH--HHHHHHhCCCCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN--SVILAISPANQDIATSDA--MKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~--~iIL~V~~a~~d~~~~~~--l~l~~~~d~~~~rti~Vlt 215 (467)
.++++||.||..+ +++.-|..+. ++.++|+++..+..++.+ +-+...+ -.+.++|+|
T Consensus 70 lq~tlvDCPGHas----------------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---c~klvvvin 130 (522)
T KOG0461|consen 70 LQFTLVDCPGHAS----------------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---CKKLVVVIN 130 (522)
T ss_pred ceeEEEeCCCcHH----------------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---ccceEEEEe
Confidence 5779999999643 3444444432 245666777666655554 4333333 356789999
Q ss_pred cCcccCCCCc
Q 012279 216 KLDLMDKGTN 225 (467)
Q Consensus 216 K~D~~~~~~~ 225 (467)
|+|...++..
T Consensus 131 kid~lpE~qr 140 (522)
T KOG0461|consen 131 KIDVLPENQR 140 (522)
T ss_pred ccccccchhh
Confidence 9999876543
No 378
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.78 E-value=0.008 Score=54.71 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
|.++|.|--||||||||+.++.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 7789999999999999999994
No 379
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0038 Score=60.75 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.|.+||.---|||||..||+|..
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvw 34 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVW 34 (415)
T ss_pred Eeeeeeecccchhhheehhhcee
Confidence 58999999999999999999975
No 380
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.69 E-value=0.0023 Score=63.70 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
.|.+||-||+||||+||+|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 467899999999999999987765
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=96.67 E-value=0.0034 Score=63.73 Aligned_cols=24 Identities=29% Similarity=0.695 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
.++++|.+|+|||||+|+|+|...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 799999999999999999999753
No 382
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.48 E-value=0.0095 Score=59.42 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|..+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 383
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.45 E-value=0.0076 Score=55.31 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHhhCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~ 61 (467)
+.|+|+-||||||.-+++...
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred EEEEccCCCCcchHHHHHHHH
Confidence 678999999999999999753
No 384
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.047 Score=53.79 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
+.-.|.|+|.||+|||+|++-|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 56679999999999999999999874
No 385
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.16 E-value=0.059 Score=53.40 Aligned_cols=42 Identities=31% Similarity=0.405 Sum_probs=31.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeec
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~ 83 (467)
...|+++|||+.++|||||..-|+..-+ --.|.|+-+.+-..
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LDvg 142 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELDVG 142 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcCCC
Confidence 4699999999999999999999986533 22556666655433
No 386
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.07 E-value=0.012 Score=52.17 Aligned_cols=55 Identities=31% Similarity=0.370 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 166 i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
++++.+++++++|.+ ++|+++....... ...+...+...+.+.++|+||+|+.+.
T Consensus 2 ~~~~~~~i~~~aD~v-l~V~D~~~~~~~~-~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 2 WKRLVRRIIKESDVV-LEVLDARDPELTR-SRKLERYVLELGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHHhhCCEE-EEEeeCCCCcccC-CHHHHHHHHhCCCcEEEEEEhHHhCCH
Confidence 467788888889954 4555665432222 233444444457899999999998743
No 387
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.89 E-value=0.0082 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
+..++.|+.+|||||++.|+.=
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999873
No 388
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.0022 Score=64.06 Aligned_cols=135 Identities=15% Similarity=0.218 Sum_probs=79.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
.++..|.|+..-.+||+|.-+.|+-..- . ++.. +. -+.+..++||-++. .
T Consensus 35 akirnigiiahidagktttterily~ag------~-~~s~---------g~--------vddgdtvtdfla~e------r 84 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAG------A-IHSA---------GD--------VDDGDTVTDFLAIE------R 84 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhh------h-hhcc---------cc--------cCCCchHHHHHHHH------H
Confidence 3455799999999999999999985321 1 1110 00 01122333443332 2
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
+ .|. .-..-.+ -..+.+..+.+|||||..+.... +.+.++--|. +++|.+++.+...+
T Consensus 85 e--rgi----tiqsaav-~fdwkg~rinlidtpghvdf~le-------------verclrvldg-avav~dasagve~q- 142 (753)
T KOG0464|consen 85 E--RGI----TIQSAAV-NFDWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDG-AVAVFDASAGVEAQ- 142 (753)
T ss_pred h--cCc----eeeeeee-ecccccceEeeecCCCcceEEEE-------------HHHHHHHhcC-eEEEEeccCCcccc-
Confidence 2 221 1111111 23456788999999998774321 3344444454 45666777666433
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..-++.+....|-++.+||+|....
T Consensus 143 tltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 143 TLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eeeeehhccccCCchhhhhhhhhhhhh
Confidence 444567788888999999999998754
No 389
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.86 E-value=0.0074 Score=54.40 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=24.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccc
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~ 68 (467)
-+++|+|+.+||||||+|-|.|.. .|.+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~-~P~~G 54 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE-TPASG 54 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc-CCCCc
Confidence 368999999999999999999987 47543
No 390
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.85 E-value=0.0062 Score=60.60 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=42.6
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc-CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
-+.||||-|.... ++..++..+. +.| -.|+|+.|+.... ....+-+.-+-..+-|+|+|+||+|+
T Consensus 202 lVsfVDtvGHEpw------------LrTtirGL~gqk~d-YglLvVaAddG~~-~~tkEHLgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 202 LVSFVDTVGHEPW------------LRTTIRGLLGQKVD-YGLLVVAADDGVT-KMTKEHLGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred EEEEEecCCccHH------------HHHHHHHHhccccc-eEEEEEEccCCcc-hhhhHhhhhhhhhcCCEEEEEEeccc
Confidence 4679999997542 2344444443 455 5666777776542 22222222233346899999999999
Q ss_pred cCCC
Q 012279 220 MDKG 223 (467)
Q Consensus 220 ~~~~ 223 (467)
.+..
T Consensus 268 ~~dd 271 (527)
T COG5258 268 VPDD 271 (527)
T ss_pred CcHH
Confidence 9754
No 391
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.15 Score=58.62 Aligned_cols=85 Identities=24% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHH---HHHHHHHHhh--cCCCeEEEEEecCCc---ccccHHH--------HHHHHHh
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVE---DIESMVRSYV--EKPNSVILAISPANQ---DIATSDA--------MKLAREV 203 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~---~i~~~~~~yi--~~~~~iIL~V~~a~~---d~~~~~~--------l~l~~~~ 203 (467)
..-++|||-|-+.... ++++.... .+-.+.++|= +.-|.|||++.-+.- +.+...+ ++-+++-
T Consensus 174 deaVlIDtaGry~~q~-s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 174 DEAVLIDTAGRYITQD-SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred cceEEEcCCcceeccc-CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999776442 22333222 2335566773 344778888754321 1111111 1111222
Q ss_pred CCCCCceEEEeccCcccCCCCc
Q 012279 204 DPTGERTFGVLTKLDLMDKGTN 225 (467)
Q Consensus 204 d~~~~rti~VltK~D~~~~~~~ 225 (467)
-...-|+.+++||.|++..-.+
T Consensus 253 L~~~~PVYl~lTk~Dll~GF~e 274 (1188)
T COG3523 253 LHARLPVYLVLTKADLLPGFEE 274 (1188)
T ss_pred hccCCceEEEEecccccccHHH
Confidence 2346899999999999975443
No 392
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.71 E-value=0.0062 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999865
No 393
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.025 Score=55.59 Aligned_cols=135 Identities=19% Similarity=0.351 Sum_probs=83.8
Q ss_pred ccCCCe--EEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHH
Q 012279 35 WEALPS--VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (467)
Q Consensus 35 ~~~lP~--IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (467)
..+.|. |.-||.---||+||--||+.. |... ...++.++++|.+..+
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITki--la~~-----------------------------g~A~~~kydeID~APE 97 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKI--LAEK-----------------------------GGAKFKKYDEIDKAPE 97 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHH--HHhc-----------------------------cccccccHhhhhcChh
Confidence 345554 677999999999999999853 2111 1223445555555443
Q ss_pred HHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-
Q 012279 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI- 191 (467)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~- 191 (467)
+.. .++.-+.-+++...+. .+..=+|.||..+ .+++|+....+- |..||+|.......
T Consensus 98 Eka-------RGITIn~aHveYeTa~-RhYaH~DCPGHAD------------YIKNMItGaaqM-DGaILVVaatDG~MP 156 (449)
T KOG0460|consen 98 EKA-------RGITINAAHVEYETAK-RHYAHTDCPGHAD------------YIKNMITGAAQM-DGAILVVAATDGPMP 156 (449)
T ss_pred hhh-------ccceEeeeeeeeeccc-cccccCCCCchHH------------HHHHhhcCcccc-CceEEEEEcCCCCCc
Confidence 322 3344555556555544 5777899999643 356666555444 55677665433322
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 192 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+.+-+-+|+++.- .++++.+||.|+++..
T Consensus 157 QTrEHlLLArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 157 QTREHLLLARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred chHHHHHHHHHcCC--ceEEEEEecccccCCH
Confidence 24555779999854 6777889999999654
No 394
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.69 E-value=0.12 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
...+.|+|||+..||||||..-|++.
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 46789999999999999998888764
No 395
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.68 E-value=0.061 Score=57.62 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCC-CCceEEEecc
Q 012279 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPT-GERTFGVLTK 216 (467)
Q Consensus 167 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~-~~rti~VltK 216 (467)
-.+++..+++++ ||+.+.++..+-......+.+.+... ..+|++++++
T Consensus 479 iaiARall~~~~--iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 479 LALARALLADAP--ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHhcCCC--EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 478999999999 45556666644343344444444432 5689999886
No 396
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.61 E-value=0.011 Score=55.67 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCCeEEEEEecCC-cccccHH-HHHHHHHhCCCCCceEEEeccCccc
Q 012279 167 ESMVRSYVEKPNSVILAISPAN-QDIATSD-AMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 167 ~~~~~~yi~~~~~iIL~V~~a~-~d~~~~~-~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
-.+++..+.+|. +||+=-|.. -|..+.. .+.+.+++......|++++|+=..+
T Consensus 151 VAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 151 VAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred HHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 366788888888 777765532 3554544 4667788776667899999986544
No 397
>PRK13695 putative NTPase; Provisional
Probab=95.54 E-value=0.062 Score=48.53 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 398
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.53 E-value=0.0096 Score=51.26 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++|+|..+||||||+++|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999999984
No 399
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.52 E-value=0.012 Score=51.11 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHhhCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~ 61 (467)
|+++|+.+||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 400
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.51 E-value=0.011 Score=54.71 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~ 67 (467)
-|.|+|..+|||||++|+|.|.- .|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l-~~t~ 60 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDL-KPTS 60 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCcc-ccCC
Confidence 49999999999999999999974 4443
No 401
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.45 E-value=0.18 Score=54.59 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.|+++|+.|+|||||++.|+|..
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999999975
No 402
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.41 E-value=0.021 Score=53.41 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.5
Q ss_pred EEEECCCCCcHHHHHHHhh
Q 012279 41 VAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~ 59 (467)
-+|||+|||||||..+...
T Consensus 5 qvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred eEEEcCCCCCccchhhhHH
Confidence 4789999999999888765
No 403
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.40 E-value=0.09 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|..+|.|--|||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999999999853
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.35 E-value=0.014 Score=53.58 Aligned_cols=29 Identities=28% Similarity=0.633 Sum_probs=23.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (467)
.++++|+++|||||++++|+|. +|...+.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~--i~~~~~~ 55 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF--IPPDERI 55 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh--cCCCCCE
Confidence 5999999999999999999986 3433343
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.34 E-value=0.13 Score=50.92 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHH---HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEec
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVED---IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~---i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 215 (467)
..++.||||.|=-.+. .++.+. +.+++...+..+..=+|+|.+|.. -+.++.-|+.+...-.=+=+|+|
T Consensus 221 ~~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt---Gqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 221 GIDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEILLVLDATT---GQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred CCCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceEEEEEEccc---ChhHHHHHHHHHHhcCCceEEEE
Confidence 4699999999966542 234333 444454544433334677777776 45677777777665445667899
Q ss_pred cCcccCCCCcHHHHh
Q 012279 216 KLDLMDKGTNALDVL 230 (467)
Q Consensus 216 K~D~~~~~~~~~~~l 230 (467)
|+|-..+|.....+.
T Consensus 293 KlDgtAKGG~il~I~ 307 (340)
T COG0552 293 KLDGTAKGGIILSIA 307 (340)
T ss_pred ecccCCCcceeeeHH
Confidence 999887777655553
No 406
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.099 Score=54.71 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+|++||+.||||||+|++|++.
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999963
No 407
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.23 E-value=0.014 Score=53.06 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh---CCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV---GRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~---G~~ 62 (467)
+.|.|+|+|.+||||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999998 654
No 408
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.19 E-value=0.014 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 409
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.018 Score=54.48 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~ 67 (467)
.|+++|+.|||||||||.|.|..- |.+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 589999999999999999999863 543
No 410
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.16 E-value=0.019 Score=51.94 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|+.+|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 411
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.13 E-value=0.038 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|+.|+||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 412
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.08 E-value=0.021 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999999974
No 413
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.07 E-value=0.13 Score=52.44 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=80.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh-
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV- 118 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~- 118 (467)
-|.|||+--+|||||+..+...-++|.=...--|. ...+.+
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~re--------------------------------------Ra~DELP 60 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERE--------------------------------------RARDELP 60 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHH--------------------------------------HhhhcCC
Confidence 59999999999999999999877776322110000 001111
Q ss_pred ---cCC-----C-CCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCcc----------------HHHHHHHHHHHh
Q 012279 119 ---TGK-----T-KQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDT----------------IVEDIESMVRSY 173 (467)
Q Consensus 119 ---~g~-----~-~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~----------------~~~~i~~~~~~y 173 (467)
.|+ . +-+-...+.+.+...-..++-+||.-|+.-....|.-++ ..+..+-=+++-
T Consensus 61 QS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KV 140 (492)
T PF09547_consen 61 QSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKV 140 (492)
T ss_pred cCCCCCceeccCCcccCCcceEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccce
Confidence 111 1 223445566666666667888999999754322221111 111111124555
Q ss_pred hcCCCeEEEEEe-cCCc-ccccHHH----HHHHHHhCCCCCceEEEeccCcccC
Q 012279 174 VEKPNSVILAIS-PANQ-DIATSDA----MKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 174 i~~~~~iIL~V~-~a~~-d~~~~~~----l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
|.+..+|=++|+ +.+- |+....- -+...++...|+|.++++|=.+--.
T Consensus 141 I~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s 194 (492)
T PF09547_consen 141 ITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS 194 (492)
T ss_pred eccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Confidence 776666655543 3322 3322221 2356777788999999999777443
No 414
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.03 E-value=0.022 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 415
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.02 E-value=0.1 Score=47.79 Aligned_cols=55 Identities=20% Similarity=0.041 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 165 DIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 165 ~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.++.++..|++++|.++ +|+++.... .+....+.. ...+.++++|+||+|+.++.
T Consensus 23 ~~~~~l~~~~~~ad~il-~VvD~~~~~-~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 23 FILNLLSSISPKKALVV-HVVDIFDFP-GSLIPRLRL--FGGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHHhcccCCcEEE-EEEECccCC-CccchhHHH--hcCCCcEEEEEEchhcCCCC
Confidence 36888999999999554 455554321 111112211 12468999999999998643
No 416
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.022 Score=54.13 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 417
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.00 E-value=0.013 Score=56.15 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 166 i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...+.+.|+.+.|.+++++...+.+......-++...+...+.+.++|+||+|+.+..
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~ 83 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE 83 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH
Confidence 4566777899999666655433233222222233333434678999999999997543
No 418
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.99 E-value=0.3 Score=45.17 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~ 59 (467)
.++++|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 419
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.96 E-value=0.022 Score=53.46 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.96 E-value=0.19 Score=39.67 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHhhC
Q 012279 41 VAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G 60 (467)
|++.|..++||||+...|..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999999874
No 421
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.95 E-value=0.1 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.|..++-|==||||||+||.|+...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4778999999999999999999754
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.92 E-value=0.021 Score=52.91 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC-CCccccccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 75 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~-~lP~~~~~~Tr~p 75 (467)
.|+++|..+||||||++.|.+.. -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 58999999999999999999862 1222333566666
No 423
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.023 Score=52.98 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999996
No 424
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.91 E-value=0.024 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 425
>PRK01889 GTPase RsgA; Reviewed
Probab=94.88 E-value=0.028 Score=57.07 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=31.2
Q ss_pred hcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 174 VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 174 i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+.+.|. +++|++++.++.....-+++..+...+.+.++|+||+|+++.
T Consensus 110 aANvD~-vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVDT-VFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EEeCCE-EEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 356674 556666666665433333444444457788999999999865
No 426
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.88 E-value=0.025 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..+|||||++++|+|.-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 427
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.84 E-value=0.062 Score=38.93 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCc--ccccHHHHHHHHHhCCC--CCceEEEeccCc
Q 012279 166 IESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPT--GERTFGVLTKLD 218 (467)
Q Consensus 166 i~~~~~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d~~--~~rti~VltK~D 218 (467)
++..+-..+.+-.+.||++.+.+. +.+.++-+.+.+++.+. +.|.+.|+||+|
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 345556667766667777766544 45556666777777764 689999999998
No 428
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.83 E-value=0.039 Score=48.92 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=31.9
Q ss_pred HHhhcCCCeEEEEEecCCccccc--HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 171 RSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 171 ~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
++.++++| +|++|+++...... ....+.++.. ..+.|.|+|+||+|+.++.
T Consensus 3 ~~~l~~aD-~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 3 YKVIDSSD-VVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hHhhhhCC-EEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 45677889 66666667654322 2223333332 2358999999999998643
No 429
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.82 E-value=0.026 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 430
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.025 Score=53.14 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 431
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.025 Score=50.62 Aligned_cols=31 Identities=39% Similarity=0.710 Sum_probs=24.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (467)
.+.+||..+||||||+++|.++ ++-..|.+|
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 5789999999999999999997 344445544
No 432
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.82 E-value=0.025 Score=42.79 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHhhCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~ 61 (467)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 433
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.78 E-value=0.15 Score=54.35 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=27.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCccccccccccc
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (467)
-+|++||..|+||||||+.|.|.. .|.+ |.+++-+
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~-~~~~-G~i~~~~ 64 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGEL-EPDS-GEVTRPK 64 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC-cCCC-CeEeecC
Confidence 479999999999999999999985 3544 4444433
No 434
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.77 E-value=0.028 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 435
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.76 E-value=0.029 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 436
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.75 E-value=0.027 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 437
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.74 E-value=0.029 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 438
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.028 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 439
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.03 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 440
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.71 E-value=0.4 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~ 66 (467)
.+++||+.|||||||++.|+|.. |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 48999999999999999999974 64
No 441
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.71 E-value=0.03 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 442
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.70 E-value=0.028 Score=52.71 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 443
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.70 E-value=0.032 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 444
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.03 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 445
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.69 E-value=0.032 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999973
No 446
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.024 Score=51.33 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (467)
-+++.|+.|+|||||+.+|....-+--+-..+||.|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 489999999999999999997653444445677766
No 447
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.68 E-value=0.024 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 448
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.67 E-value=0.026 Score=56.78 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=26.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccc
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (467)
-..|+|+|++||||||++++|++. +|.+..++|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 356999999999999999999975 465544444
No 449
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.66 E-value=0.5 Score=52.60 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 166 i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
--.+++..+++++ |++.+.++..+-......+.+.+.. ..+|++++|+-
T Consensus 623 RiaLARall~~p~--iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHr 671 (710)
T TIGR03796 623 RLEIARALVRNPS--ILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHR 671 (710)
T ss_pred HHHHHHHHhhCCC--EEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 3468999999999 4445666654434444444444544 46888888775
No 450
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.66 E-value=0.033 Score=51.13 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..-|+++|++|||||||+++|+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345899999999999999999875
No 451
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.03 Score=51.81 Aligned_cols=31 Identities=35% Similarity=0.668 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (467)
..+|+|+.+||||||+.+|+|. +.|.+ |.|+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~-G~v~ 59 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS-GEVT 59 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC-CeEe
Confidence 5899999999999999999997 34544 4444
No 452
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.029 Score=53.28 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 453
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.03 Score=52.66 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 454
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.62 E-value=0.029 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||+++|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 455
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.59 E-value=0.033 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999999974
No 456
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.58 E-value=0.62 Score=43.12 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.++||||++..|.+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 6999999999999999999953
No 457
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.58 E-value=0.034 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|+.|||||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999974
No 458
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.57 E-value=0.041 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=17.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+-++|+|..|+|||+|++++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998754
No 459
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.57 E-value=0.034 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 460
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.57 E-value=0.034 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999973
No 461
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.56 E-value=0.032 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48899999999999999999963
No 462
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.56 E-value=0.032 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-++++|+.||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3899999999999999999996
No 463
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.53 E-value=0.034 Score=52.06 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (467)
.++++|+.++|||||++.|.|.. |...|.+
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i 68 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESGQI 68 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCeeE
Confidence 58899999999999999999973 3344533
No 464
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.52 E-value=0.5 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.|+++|+.|||||||++.|+|..
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999974
No 465
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.036 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 466
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.038 Score=48.95 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=25.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccc
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (467)
..++++|+.++|||||+++|.|.. |...|.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 468999999999999999999974 43445443
No 467
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.52 E-value=0.041 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
...|+++|.++||||||++.|.+.
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999999985
No 468
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.51 E-value=0.035 Score=52.73 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999963
No 469
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.50 E-value=0.037 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|..+||||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999974
No 470
>PLN03232 ABC transporter C family member; Provisional
Probab=94.50 E-value=0.22 Score=59.93 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++|||+.|||||||+++|+|.-
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999974
No 471
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.48 E-value=0.03 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|+.+||||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999999974
No 472
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.034 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 473
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.48 E-value=0.036 Score=51.54 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (467)
.++|+|..++|||||+++|+|.. |...|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 65 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGKI 65 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCeE
Confidence 58999999999999999999974 3344443
No 474
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.47 E-value=0.034 Score=51.68 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999974
No 475
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.46 E-value=0.11 Score=50.76 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 167 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+.+.+.++.+| +|+.|+++...... +...+.+.+. +.+.|+|+||+|+.++
T Consensus 12 ~~~~~~~l~~aD-vVl~V~Dar~p~~~-~~~~i~~~l~--~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 12 RREIKEKLKLVD-VVIEVLDARIPLSS-RNPMIDEIRG--NKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHHhhCC-EEEEEEeCCCCCCC-CChhHHHHHC--CCCEEEEEEccccCCH
Confidence 445678889999 56666677644322 2233444442 5799999999999754
No 476
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.44 E-value=0.036 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..+||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 58999999999999999999974
No 477
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.43 E-value=0.04 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 478
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.43 E-value=0.027 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHhhCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~ 61 (467)
|+++|.++|||||+...|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 479
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.43 E-value=0.081 Score=56.66 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 480
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.42 E-value=0.011 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~ 66 (467)
.+++||+.+||||||+|-|+|.. -|+
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~-~P~ 57 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFY-KPS 57 (250)
T ss_pred EEEEECCCCCCceeeeeeecccc-cCC
Confidence 47999999999999999999974 354
No 481
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.42 E-value=0.039 Score=51.83 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 482
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.42 E-value=0.054 Score=47.12 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC--CCCceEEEeccCcccCC
Q 012279 168 SMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP--TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 168 ~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 222 (467)
+.+++.++++| ++++|+++....... ...+.+.+.. .+.+.++|+||+|+.++
T Consensus 3 ~~~~~~i~~aD-~vl~ViD~~~p~~~~-~~~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 3 RQLWRVVERSD-IVVQIVDARNPLLFR-PPDLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHHhhCC-EEEEEEEccCCcccC-CHHHHHHHHhccCCCcEEEEEechhcCCH
Confidence 34677889999 455566666544333 2233443333 37899999999999754
No 483
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.40 E-value=0.039 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999974
No 484
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.037 Score=54.94 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=24.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (467)
.++++|+.|||||||++.|.|.. |-..|.+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~--~p~~G~i 64 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL--LPDTGTI 64 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC--CCCCcEE
Confidence 69999999999999999999973 3334543
No 485
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.39 E-value=0.037 Score=51.85 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=24.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (467)
.++++|+.+||||||++.|+|.. .| .+|.+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~-~~-~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD-AP-DEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-cC-CCCCE
Confidence 57899999999999999999974 24 44544
No 486
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.39 E-value=0.038 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 487
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.38 E-value=0.037 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999974
No 488
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.38 E-value=0.037 Score=52.91 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (467)
-++++|+.|||||||+.+|+|. ++-..|.+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl--l~p~~G~i~ 62 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL--LKPSSGEIK 62 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCcceEE
Confidence 4899999999999999999995 333334444
No 489
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.039 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 490
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.38 E-value=0.043 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 491
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.042 Score=49.58 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 492
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.35 E-value=0.038 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999974
No 493
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.041 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999963
No 494
>PRK12289 GTPase RsgA; Reviewed
Probab=94.34 E-value=0.054 Score=54.75 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 167 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+.+.++.+.|.+++++...+.++.....-+++..+...+.+.++|+||+|+.+.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP 135 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh
Confidence 34566778899955555443333332222122333334457999999999999854
No 495
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.04 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++|+|+.+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57999999999999999999974
No 496
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.33 E-value=0.042 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 497
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.32 E-value=0.045 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..+||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 498
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.32 E-value=0.042 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 499
>PRK10908 cell division protein FtsE; Provisional
Probab=94.31 E-value=0.042 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|+.+||||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999974
No 500
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.042 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
Done!