Query 012279
Match_columns 467
No_of_seqs 365 out of 3152
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.5E-70 5.2E-75 592.4 41.0 438 3-454 25-470 (772)
2 3szr_A Interferon-induced GTP- 100.0 7.9E-57 2.7E-61 482.9 38.5 417 36-455 43-472 (608)
3 3t34_A Dynamin-related protein 100.0 3.1E-52 1E-56 421.7 28.7 331 4-335 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 1.2E-48 3.9E-53 394.4 35.1 338 3-352 5-344 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 1E-40 3.6E-45 330.6 28.9 310 5-324 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 4.5E-39 1.5E-43 316.2 33.0 298 4-313 1-298 (299)
7 2j69_A Bacterial dynamin-like 99.8 3.2E-19 1.1E-23 193.8 21.4 176 34-223 65-246 (695)
8 3iev_A GTP-binding protein ERA 99.7 5.6E-18 1.9E-22 166.9 12.6 210 37-308 9-222 (308)
9 1wf3_A GTP-binding protein; GT 99.7 2.2E-17 7.6E-22 162.0 10.4 203 37-309 6-215 (301)
10 3iby_A Ferrous iron transport 99.6 1.3E-15 4.3E-20 146.1 7.8 123 38-223 1-126 (256)
11 1ega_A Protein (GTP-binding pr 99.6 2.7E-16 9.4E-21 154.3 2.9 202 37-306 7-213 (301)
12 4dhe_A Probable GTP-binding pr 99.6 1.1E-14 3.6E-19 135.8 10.2 130 36-223 27-160 (223)
13 3pqc_A Probable GTP-binding pr 99.5 3.4E-14 1.2E-18 128.9 10.4 126 36-223 21-149 (195)
14 1svi_A GTP-binding protein YSX 99.5 5.7E-14 2E-18 127.7 11.1 126 37-223 22-150 (195)
15 3i8s_A Ferrous iron transport 99.5 1.5E-14 5.3E-19 139.9 7.0 123 38-223 3-128 (274)
16 2xtp_A GTPase IMAP family memb 99.5 2.3E-14 7.9E-19 137.3 7.9 126 37-221 21-153 (260)
17 3tkl_A RAS-related protein RAB 99.5 7.3E-14 2.5E-18 127.0 10.8 158 37-260 15-174 (196)
18 1kao_A RAP2A; GTP-binding prot 99.5 9.7E-14 3.3E-18 122.2 10.9 153 39-259 4-160 (167)
19 3a1s_A Iron(II) transport prot 99.5 7E-14 2.4E-18 134.1 10.0 152 37-259 4-161 (258)
20 2qu8_A Putative nucleolar GTP- 99.5 1.3E-13 4.3E-18 129.4 11.4 135 29-223 20-158 (228)
21 3t5d_A Septin-7; GTP-binding p 99.5 1.2E-13 4.1E-18 133.5 11.6 138 38-223 8-160 (274)
22 1zbd_A Rabphilin-3A; G protein 99.5 7.7E-14 2.6E-18 127.9 9.3 120 37-223 7-129 (203)
23 2dyk_A GTP-binding protein; GT 99.5 9.5E-14 3.2E-18 121.9 9.4 148 38-253 1-150 (161)
24 3bc1_A RAS-related protein RAB 99.5 1E-13 3.5E-18 125.4 9.8 69 140-222 70-142 (195)
25 1z08_A RAS-related protein RAB 99.5 4.9E-14 1.7E-18 124.9 7.5 119 37-222 5-126 (170)
26 3tw8_B RAS-related protein RAB 99.5 2.2E-14 7.4E-19 128.4 4.7 121 36-223 7-129 (181)
27 3clv_A RAB5 protein, putative; 99.5 1E-13 3.4E-18 126.3 9.3 65 140-218 93-158 (208)
28 1g16_A RAS-related protein SEC 99.5 5.3E-14 1.8E-18 124.5 7.2 117 38-221 3-122 (170)
29 2g6b_A RAS-related protein RAB 99.5 1.1E-13 3.7E-18 124.0 9.3 123 36-223 8-132 (180)
30 1mky_A Probable GTP-binding pr 99.5 5.3E-14 1.8E-18 145.2 8.2 160 38-263 1-164 (439)
31 3lxx_A GTPase IMAP family memb 99.5 9.2E-14 3.1E-18 131.4 9.0 128 37-223 28-161 (239)
32 3q72_A GTP-binding protein RAD 99.5 8.1E-14 2.8E-18 123.1 8.1 117 38-223 2-122 (166)
33 1u8z_A RAS-related protein RAL 99.5 1.2E-13 4.1E-18 121.7 9.1 118 38-223 4-125 (168)
34 2oil_A CATX-8, RAS-related pro 99.5 1E-13 3.5E-18 126.0 8.9 119 37-222 24-145 (193)
35 3k53_A Ferrous iron transport 99.5 2.2E-14 7.7E-19 138.4 4.6 151 38-259 3-160 (271)
36 3cph_A RAS-related protein SEC 99.5 1E-13 3.4E-18 127.9 8.7 160 37-263 19-180 (213)
37 2qpt_A EH domain-containing pr 99.5 2.5E-13 8.7E-18 143.6 13.0 168 36-223 63-234 (550)
38 2bme_A RAB4A, RAS-related prot 99.5 1.4E-13 4.8E-18 124.0 9.4 119 37-222 9-130 (186)
39 2a9k_A RAS-related protein RAL 99.5 2.1E-13 7.1E-18 122.6 10.5 118 37-222 17-138 (187)
40 1z0j_A RAB-22, RAS-related pro 99.5 1.1E-13 3.8E-18 122.4 8.5 119 38-223 6-127 (170)
41 2il1_A RAB12; G-protein, GDP, 99.5 1.8E-13 6.1E-18 124.7 9.8 120 37-223 25-147 (192)
42 1z0f_A RAB14, member RAS oncog 99.5 1.4E-13 4.8E-18 122.8 9.0 120 37-223 14-136 (179)
43 2f7s_A C25KG, RAS-related prot 99.5 2.1E-13 7.3E-18 126.4 10.5 105 140-258 84-192 (217)
44 3lxw_A GTPase IMAP family memb 99.5 1.4E-13 4.7E-18 131.2 9.3 127 37-221 20-153 (247)
45 3b1v_A Ferrous iron uptake tra 99.4 1.5E-13 5.1E-18 132.7 9.6 148 38-256 3-155 (272)
46 1c1y_A RAS-related protein RAP 99.4 1.3E-13 4.6E-18 121.6 8.5 118 39-223 4-124 (167)
47 2bov_A RAla, RAS-related prote 99.4 2.6E-13 8.8E-18 124.4 10.4 155 37-259 13-171 (206)
48 1wms_A RAB-9, RAB9, RAS-relate 99.4 1.7E-13 5.7E-18 122.4 8.8 119 37-222 6-131 (177)
49 2fn4_A P23, RAS-related protei 99.4 1.1E-13 3.8E-18 123.7 7.6 119 37-223 8-130 (181)
50 1ek0_A Protein (GTP-binding pr 99.4 1.2E-13 4.2E-18 122.1 7.7 117 39-222 4-123 (170)
51 2fg5_A RAB-22B, RAS-related pr 99.4 7.8E-14 2.7E-18 127.0 6.6 120 36-222 21-143 (192)
52 4dcu_A GTP-binding protein ENG 99.4 2.1E-13 7.3E-18 141.4 10.6 125 37-222 22-146 (456)
53 2efe_B Small GTP-binding prote 99.4 1.1E-13 3.9E-18 123.9 7.4 120 37-223 11-133 (181)
54 2lkc_A Translation initiation 99.4 8.5E-14 2.9E-18 124.4 6.4 117 36-222 6-122 (178)
55 2ew1_A RAS-related protein RAB 99.4 2E-13 6.8E-18 125.7 9.1 120 36-222 24-146 (201)
56 2y8e_A RAB-protein 6, GH09086P 99.4 1.2E-13 4E-18 123.4 7.2 118 39-223 15-135 (179)
57 1xzp_A Probable tRNA modificat 99.4 1.5E-12 5.2E-17 135.3 16.0 157 38-261 243-401 (482)
58 2hjg_A GTP-binding protein ENG 99.4 2.6E-13 8.7E-18 140.0 10.0 155 38-258 3-158 (436)
59 1upt_A ARL1, ADP-ribosylation 99.4 2.4E-13 8.1E-18 120.6 8.5 115 37-223 6-124 (171)
60 1z2a_A RAS-related protein RAB 99.4 5.1E-14 1.7E-18 124.4 4.0 118 37-222 4-124 (168)
61 4dsu_A GTPase KRAS, isoform 2B 99.4 5E-13 1.7E-17 120.5 10.7 152 38-258 4-159 (189)
62 2gf9_A RAS-related protein RAB 99.4 2E-13 6.7E-18 123.8 7.9 119 37-222 21-142 (189)
63 1z06_A RAS-related protein RAB 99.4 1.7E-13 5.7E-18 124.3 7.4 120 37-222 19-142 (189)
64 2bcg_Y Protein YP2, GTP-bindin 99.4 2E-13 6.9E-18 125.5 7.8 120 37-223 7-129 (206)
65 2erx_A GTP-binding protein DI- 99.4 1.9E-13 6.6E-18 121.0 7.4 118 39-223 4-125 (172)
66 2ce2_X GTPase HRAS; signaling 99.4 2.4E-13 8.3E-18 119.3 8.0 148 39-255 4-155 (166)
67 4djt_A GTP-binding nuclear pro 99.4 2E-13 7E-18 126.6 7.8 110 140-263 61-173 (218)
68 2a5j_A RAS-related protein RAB 99.4 2.3E-13 7.7E-18 123.7 7.9 119 37-222 20-141 (191)
69 2hup_A RAS-related protein RAB 99.4 4.4E-13 1.5E-17 123.1 9.8 121 36-222 27-149 (201)
70 3ljb_A Interferon-induced GTP- 99.4 2.6E-13 9E-18 129.2 8.4 122 332-454 3-131 (271)
71 1r8s_A ADP-ribosylation factor 99.4 5.8E-13 2E-17 117.3 10.1 111 40-222 2-116 (164)
72 1x3s_A RAS-related protein RAB 99.4 3.9E-13 1.3E-17 121.9 9.0 119 37-222 14-136 (195)
73 3oes_A GTPase rhebl1; small GT 99.4 1.1E-13 3.9E-18 126.8 5.5 155 37-259 23-181 (201)
74 3kkq_A RAS-related protein M-R 99.4 5.2E-13 1.8E-17 120.0 9.6 154 37-257 17-174 (183)
75 2nzj_A GTP-binding protein REM 99.4 4E-13 1.4E-17 119.6 8.7 121 37-223 3-127 (175)
76 1r2q_A RAS-related protein RAB 99.4 4.2E-13 1.5E-17 118.5 8.7 117 38-222 6-126 (170)
77 2o52_A RAS-related protein RAB 99.4 2E-13 6.7E-18 125.3 6.6 156 37-260 24-183 (200)
78 1vg8_A RAS-related protein RAB 99.4 1.9E-13 6.6E-18 125.4 6.6 119 37-222 7-132 (207)
79 4dcu_A GTP-binding protein ENG 99.4 8.8E-13 3E-17 136.8 12.2 130 36-224 193-323 (456)
80 2cxx_A Probable GTP-binding pr 99.4 5.5E-13 1.9E-17 120.4 9.4 125 38-223 1-138 (190)
81 3dz8_A RAS-related protein RAB 99.4 1.1E-13 3.6E-18 125.9 4.6 122 36-223 21-144 (191)
82 4bas_A ADP-ribosylation factor 99.4 2.8E-13 9.6E-18 123.4 7.4 118 36-223 15-143 (199)
83 3q85_A GTP-binding protein REM 99.4 4.5E-13 1.5E-17 118.6 8.5 121 38-223 2-125 (169)
84 3gee_A MNME, tRNA modification 99.4 2.7E-13 9.2E-18 140.8 8.0 156 37-258 232-391 (476)
85 2fu5_C RAS-related protein RAB 99.4 1.8E-13 6.2E-18 123.1 5.8 120 37-223 7-129 (183)
86 2p5s_A RAS and EF-hand domain 99.4 4E-13 1.4E-17 123.0 8.2 117 37-220 27-146 (199)
87 1ky3_A GTP-binding protein YPT 99.4 4.3E-13 1.5E-17 120.0 8.1 153 37-258 7-171 (182)
88 3geh_A MNME, tRNA modification 99.4 1.8E-13 6.3E-18 141.5 5.9 155 37-260 223-379 (462)
89 3t5g_A GTP-binding protein RHE 99.4 2.8E-13 9.7E-18 121.6 6.2 155 37-259 5-163 (181)
90 3con_A GTPase NRAS; structural 99.4 1.3E-12 4.4E-17 118.3 10.4 117 38-222 21-141 (190)
91 2gj8_A MNME, tRNA modification 99.4 2E-12 7E-17 115.7 11.5 125 38-222 4-130 (172)
92 2hjg_A GTP-binding protein ENG 99.4 9.3E-13 3.2E-17 135.8 10.6 128 37-224 174-303 (436)
93 2hxs_A RAB-26, RAS-related pro 99.4 2.2E-13 7.5E-18 121.7 5.1 27 37-63 5-31 (178)
94 2h57_A ADP-ribosylation factor 99.4 6.1E-13 2.1E-17 120.6 8.0 117 36-222 19-141 (190)
95 2qtf_A Protein HFLX, GTP-bindi 99.4 3.9E-12 1.3E-16 127.8 14.4 127 36-223 177-308 (364)
96 1zj6_A ADP-ribosylation factor 99.4 6.3E-13 2.2E-17 120.2 7.6 114 37-222 15-132 (187)
97 2wji_A Ferrous iron transport 99.4 3.7E-13 1.3E-17 119.5 5.2 117 39-221 4-122 (165)
98 1ksh_A ARF-like protein 2; sma 99.4 1.3E-12 4.3E-17 117.9 8.9 115 37-223 17-135 (186)
99 1zd9_A ADP-ribosylation factor 99.4 7.6E-12 2.6E-16 113.3 13.7 116 36-222 20-139 (188)
100 2atv_A RERG, RAS-like estrogen 99.3 1.1E-12 3.8E-17 119.6 7.8 118 37-222 27-147 (196)
101 2yc2_C IFT27, small RAB-relate 99.3 4.4E-13 1.5E-17 122.9 4.7 69 139-221 72-146 (208)
102 2ged_A SR-beta, signal recogni 99.3 7.4E-12 2.5E-16 113.5 12.7 120 36-223 46-172 (193)
103 2x77_A ADP-ribosylation factor 99.3 6.3E-13 2.2E-17 120.4 5.3 114 37-222 21-138 (189)
104 2fh5_B SR-beta, signal recogni 99.3 3.6E-12 1.2E-16 117.8 10.3 119 37-223 6-131 (214)
105 1moz_A ARL1, ADP-ribosylation 99.3 7.4E-13 2.5E-17 118.9 5.2 114 37-222 17-134 (183)
106 3cbq_A GTP-binding protein REM 99.3 2.5E-12 8.4E-17 117.7 8.8 106 140-257 72-180 (195)
107 3cpj_B GTP-binding protein YPT 99.3 7.8E-13 2.7E-17 123.4 5.4 119 37-222 12-133 (223)
108 2b6h_A ADP-ribosylation factor 99.3 1.5E-12 5.3E-17 118.6 6.9 114 37-222 28-145 (192)
109 3l0i_B RAS-related protein RAB 99.3 8.7E-14 3E-18 127.4 -1.8 120 37-223 32-154 (199)
110 1h65_A Chloroplast outer envel 99.3 5.3E-12 1.8E-16 121.6 10.7 125 37-223 38-170 (270)
111 1fzq_A ADP-ribosylation factor 99.3 5.2E-12 1.8E-16 113.8 9.8 115 37-223 15-133 (181)
112 3c5c_A RAS-like protein 12; GD 99.3 1.6E-12 5.3E-17 118.0 6.2 116 38-222 21-142 (187)
113 3qq5_A Small GTP-binding prote 99.3 3.9E-12 1.3E-16 129.9 9.9 160 36-261 32-192 (423)
114 2q3h_A RAS homolog gene family 99.3 1.9E-12 6.4E-17 118.4 6.7 118 36-222 18-139 (201)
115 3reg_A RHO-like small GTPase; 99.3 1.1E-12 3.7E-17 119.4 5.1 117 37-222 22-142 (194)
116 3def_A T7I23.11 protein; chlor 99.3 8.8E-12 3E-16 119.6 11.7 124 37-222 35-166 (262)
117 2gf0_A GTP-binding protein DI- 99.3 2.1E-12 7.3E-17 117.5 6.8 119 37-222 7-129 (199)
118 3t1o_A Gliding protein MGLA; G 99.3 2.8E-12 9.5E-17 116.3 7.3 69 140-222 74-150 (198)
119 2h17_A ADP-ribosylation factor 99.3 1.4E-12 4.8E-17 117.4 5.1 115 36-222 19-137 (181)
120 2atx_A Small GTP binding prote 99.3 1.8E-12 6.1E-17 117.9 5.6 118 37-222 17-137 (194)
121 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.1E-12 3.7E-17 117.9 3.9 117 38-222 5-124 (186)
122 2e87_A Hypothetical protein PH 99.3 1.3E-11 4.4E-16 123.9 12.0 126 36-222 165-295 (357)
123 2fv8_A H6, RHO-related GTP-bin 99.3 1.1E-12 3.8E-17 120.8 3.9 117 38-222 25-144 (207)
124 2gco_A H9, RHO-related GTP-bin 99.3 1.3E-12 4.4E-17 119.8 4.3 118 37-222 24-144 (201)
125 3llu_A RAS-related GTP-binding 99.3 1.4E-11 4.8E-16 112.4 11.1 120 36-222 18-144 (196)
126 2j1l_A RHO-related GTP-binding 99.3 2.4E-12 8.2E-17 119.4 5.9 116 38-222 34-153 (214)
127 1lnz_A SPO0B-associated GTP-bi 99.3 5.5E-13 1.9E-17 132.7 1.0 158 38-258 158-323 (342)
128 2wjg_A FEOB, ferrous iron tran 99.3 3.7E-12 1.3E-16 114.9 6.3 119 37-221 6-126 (188)
129 4dkx_A RAS-related protein RAB 99.2 1E-11 3.5E-16 115.7 8.5 150 40-255 15-166 (216)
130 3bwd_D RAC-like GTP-binding pr 99.2 1.4E-12 4.8E-17 116.8 2.4 117 37-222 7-127 (182)
131 3r7w_A Gtpase1, GTP-binding pr 99.2 6.8E-12 2.3E-16 123.3 7.3 74 139-221 51-129 (307)
132 2j0v_A RAC-like GTP-binding pr 99.2 1.4E-12 4.7E-17 120.4 2.0 117 37-222 8-128 (212)
133 3gj0_A GTP-binding nuclear pro 99.2 1.5E-12 5.1E-17 121.2 2.3 69 140-223 64-135 (221)
134 1m2o_B GTP-binding protein SAR 99.2 9.6E-12 3.3E-16 113.1 7.6 113 37-221 22-138 (190)
135 1mky_A Probable GTP-binding pr 99.2 6.6E-11 2.3E-15 122.0 14.7 128 37-223 179-308 (439)
136 2iwr_A Centaurin gamma 1; ANK 99.2 1.5E-11 5.3E-16 109.8 8.8 26 38-63 7-32 (178)
137 4a9a_A Ribosome-interacting GT 99.2 9.8E-12 3.4E-16 124.8 8.2 124 35-220 69-195 (376)
138 1f6b_A SAR1; gtpases, N-termin 99.2 8.8E-12 3E-16 114.1 7.2 113 37-221 24-140 (198)
139 3q3j_B RHO-related GTP-binding 99.2 3.9E-12 1.3E-16 118.1 4.7 117 37-222 26-146 (214)
140 3th5_A RAS-related C3 botulinu 98.9 7.9E-13 2.7E-17 121.4 0.0 118 37-222 29-149 (204)
141 4gzl_A RAS-related C3 botulinu 99.2 2.2E-12 7.5E-17 118.7 2.7 118 37-223 29-150 (204)
142 3ihw_A Centg3; RAS, centaurin, 99.2 2.4E-11 8.4E-16 109.8 9.5 27 37-63 19-45 (184)
143 3dpu_A RAB family protein; roc 99.2 3.7E-11 1.3E-15 127.0 11.9 108 139-261 97-204 (535)
144 1m7b_A RND3/RHOE small GTP-bin 99.2 1.2E-11 4E-16 111.6 6.4 116 37-221 6-125 (184)
145 1nrj_B SR-beta, signal recogni 99.2 7.1E-11 2.4E-15 109.3 11.6 116 36-223 10-136 (218)
146 3o47_A ADP-ribosylation factor 99.2 2E-11 6.7E-16 121.2 7.5 112 40-223 167-282 (329)
147 1gwn_A RHO-related GTP-binding 99.2 1.4E-11 5E-16 113.5 5.6 116 37-221 27-146 (205)
148 1wxq_A GTP-binding protein; st 99.2 4.5E-12 1.6E-16 128.7 1.9 37 40-76 2-38 (397)
149 2wkq_A NPH1-1, RAS-related C3 99.2 2E-11 7E-16 120.3 6.4 117 37-222 154-274 (332)
150 3lvq_E ARF-GAP with SH3 domain 99.2 1.3E-10 4.4E-15 121.7 12.1 113 38-222 322-438 (497)
151 2g3y_A GTP-binding protein GEM 99.1 9.2E-11 3.1E-15 108.8 9.0 26 37-62 36-61 (211)
152 3izy_P Translation initiation 99.1 2.1E-11 7.1E-16 127.9 5.2 117 37-222 3-119 (537)
153 3izq_1 HBS1P, elongation facto 99.1 4.1E-10 1.4E-14 120.4 14.4 148 36-222 165-320 (611)
154 1wb1_A Translation elongation 99.1 7.5E-11 2.6E-15 122.9 8.2 67 139-222 72-140 (482)
155 2qag_A Septin-2, protein NEDD5 99.1 8.7E-11 3E-15 117.9 8.1 82 140-223 95-190 (361)
156 3sjy_A Translation initiation 99.1 1.5E-10 5.1E-15 118.0 9.3 68 140-223 75-145 (403)
157 3j2k_7 ERF3, eukaryotic polype 99.1 3.6E-10 1.2E-14 116.4 11.9 66 139-221 94-169 (439)
158 2cjw_A GTP-binding protein GEM 99.1 1.6E-10 5.5E-15 105.2 7.6 25 37-61 5-29 (192)
159 2f9l_A RAB11B, member RAS onco 99.1 1.4E-10 4.8E-15 105.9 7.1 27 37-63 4-30 (199)
160 3tr5_A RF-3, peptide chain rel 99.1 3.7E-10 1.3E-14 118.6 10.5 138 37-222 12-149 (528)
161 3p26_A Elongation factor 1 alp 99.0 3.5E-10 1.2E-14 118.0 9.7 71 138-222 109-186 (483)
162 2zej_A Dardarin, leucine-rich 99.0 4.8E-11 1.7E-15 107.7 2.6 23 39-61 3-25 (184)
163 2www_A Methylmalonic aciduria 99.0 1.6E-09 5.3E-14 108.3 12.6 25 37-61 73-97 (349)
164 3p32_A Probable GTPase RV1496/ 99.0 1.4E-09 4.8E-14 108.9 11.3 24 37-60 78-101 (355)
165 2ywe_A GTP-binding protein LEP 99.0 6.2E-10 2.1E-14 118.2 9.1 134 37-222 5-140 (600)
166 1f60_A Elongation factor EEF1A 99.0 5.4E-10 1.9E-14 115.7 7.4 143 37-221 6-159 (458)
167 3cb4_D GTP-binding protein LEP 99.0 5.8E-10 2E-14 118.6 7.6 134 37-222 3-138 (599)
168 1zo1_I IF2, translation initia 99.0 2.6E-10 8.9E-15 118.6 4.8 114 37-222 3-118 (501)
169 1oix_A RAS-related protein RAB 99.0 7.6E-10 2.6E-14 100.5 7.1 27 37-63 28-54 (191)
170 1g7s_A Translation initiation 98.9 3.8E-10 1.3E-14 120.1 5.1 67 140-221 70-136 (594)
171 1s0u_A EIF-2-gamma, translatio 98.9 3.5E-09 1.2E-13 108.0 12.0 68 140-223 81-151 (408)
172 2h5e_A Peptide chain release f 98.9 2.4E-09 8.1E-14 112.6 10.9 70 139-223 81-150 (529)
173 1pui_A ENGB, probable GTP-bind 98.9 3.3E-09 1.1E-13 97.3 10.7 78 141-223 73-153 (210)
174 1kk1_A EIF2gamma; initiation o 98.9 4E-09 1.4E-13 107.7 11.7 68 140-223 83-153 (410)
175 1zun_B Sulfate adenylate trans 98.9 6.9E-09 2.4E-13 106.7 13.3 68 138-222 102-172 (434)
176 2elf_A Protein translation elo 98.9 3.1E-09 1.1E-13 106.8 10.0 63 139-219 59-125 (370)
177 2c78_A Elongation factor TU-A; 98.9 4.3E-09 1.5E-13 107.2 10.2 69 138-221 73-142 (405)
178 2xex_A Elongation factor G; GT 98.9 1E-09 3.4E-14 119.2 5.0 69 139-222 74-142 (693)
179 2qag_B Septin-6, protein NEDD5 98.8 5.1E-09 1.8E-13 106.4 8.8 82 140-223 95-192 (427)
180 1jny_A EF-1-alpha, elongation 98.8 8.6E-09 2.9E-13 106.0 9.4 67 139-222 83-159 (435)
181 1dar_A EF-G, elongation factor 98.8 7.7E-09 2.6E-13 112.3 8.6 69 139-222 76-144 (691)
182 1d2e_A Elongation factor TU (E 98.8 9.3E-09 3.2E-13 104.5 8.5 69 138-221 64-133 (397)
183 1jal_A YCHF protein; nucleotid 98.8 5.3E-09 1.8E-13 104.3 6.1 37 39-75 3-39 (363)
184 2qag_C Septin-7; cell cycle, c 98.8 3.1E-08 1.1E-12 100.9 11.7 81 140-222 88-182 (418)
185 2qnr_A Septin-2, protein NEDD5 98.8 1.3E-08 4.3E-13 99.6 8.3 81 140-222 76-170 (301)
186 1udx_A The GTP-binding protein 98.8 6.5E-09 2.2E-13 105.9 6.4 25 38-62 157-181 (416)
187 2rdo_7 EF-G, elongation factor 98.8 4.2E-08 1.4E-12 106.6 13.2 68 140-222 82-149 (704)
188 3ec1_A YQEH GTPase; atnos1, at 98.7 9.3E-10 3.2E-14 110.7 -0.2 24 38-61 162-185 (369)
189 3c5h_A Glucocorticoid receptor 98.7 2.6E-09 9E-14 101.8 2.9 25 37-61 18-51 (255)
190 3mca_A HBS1, elongation factor 98.7 5.9E-10 2E-14 118.8 -2.1 25 37-61 176-200 (592)
191 2qm8_A GTPase/ATPase; G protei 98.7 8.3E-08 2.8E-12 95.2 13.5 25 37-61 54-78 (337)
192 2p67_A LAO/AO transport system 98.7 6.6E-08 2.3E-12 96.1 12.4 25 37-61 55-79 (341)
193 1n0u_A EF-2, elongation factor 98.7 9.1E-09 3.1E-13 114.0 6.5 67 139-220 97-163 (842)
194 1r5b_A Eukaryotic peptide chai 98.7 2.8E-08 9.4E-13 103.1 7.9 66 139-221 120-195 (467)
195 3h2y_A GTPase family protein; 98.6 4.9E-09 1.7E-13 105.4 0.4 24 39-62 161-184 (368)
196 2ohf_A Protein OLA1, GTP-bindi 98.6 3.7E-08 1.3E-12 99.2 6.6 40 37-76 21-60 (396)
197 3r7w_B Gtpase2, GTP-binding pr 98.6 2.2E-07 7.7E-12 91.1 11.5 72 139-222 45-121 (331)
198 3sop_A Neuronal-specific septi 98.6 9.5E-08 3.2E-12 91.8 8.6 82 140-223 60-156 (270)
199 3avx_A Elongation factor TS, e 98.6 4E-08 1.4E-12 109.9 6.5 67 138-221 357-426 (1289)
200 2dy1_A Elongation factor G; tr 98.6 7.4E-08 2.5E-12 104.1 7.8 132 37-220 8-139 (665)
201 2j37_W Signal recognition part 98.5 3.7E-07 1.3E-11 95.0 11.7 79 139-229 183-262 (504)
202 1yrb_A ATP(GTP)binding protein 98.5 1.7E-07 5.9E-12 89.0 8.3 28 37-64 13-45 (262)
203 3vqt_A RF-3, peptide chain rel 98.5 1E-07 3.5E-12 100.6 7.2 136 37-222 30-167 (548)
204 2dby_A GTP-binding protein; GD 98.5 1.4E-07 4.9E-12 94.4 7.1 38 39-76 2-39 (368)
205 3j25_A Tetracycline resistance 98.4 1.2E-07 4.2E-12 101.9 4.4 71 138-223 65-135 (638)
206 1f5n_A Interferon-induced guan 98.4 9.1E-07 3.1E-11 93.6 10.5 27 37-63 37-63 (592)
207 4fn5_A EF-G 1, elongation fact 98.4 3.6E-07 1.2E-11 99.6 7.4 136 37-221 12-151 (709)
208 1puj_A YLQF, conserved hypothe 98.3 4.1E-07 1.4E-11 87.9 5.8 29 37-65 119-147 (282)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 2.2E-07 7.4E-12 93.7 3.8 40 37-76 19-59 (392)
210 1tq4_A IIGP1, interferon-induc 98.3 4.2E-06 1.4E-10 84.9 12.8 120 37-220 68-188 (413)
211 3dm5_A SRP54, signal recogniti 98.3 4.4E-06 1.5E-10 85.2 12.9 81 139-230 182-262 (443)
212 2wsm_A Hydrogenase expression/ 98.3 1.5E-07 5.2E-12 86.9 0.9 25 37-61 29-53 (221)
213 3cnl_A YLQF, putative uncharac 98.1 2.5E-06 8.6E-11 81.4 4.7 25 39-63 100-124 (262)
214 2v3c_C SRP54, signal recogniti 98.0 9.6E-06 3.3E-10 82.9 9.0 80 138-229 179-260 (432)
215 3kl4_A SRP54, signal recogniti 98.0 7.4E-06 2.5E-10 83.5 8.1 83 139-230 179-261 (433)
216 2hf9_A Probable hydrogenase ni 97.9 4E-06 1.4E-10 77.5 3.0 26 37-62 37-62 (226)
217 3q5d_A Atlastin-1; G protein, 97.9 1.8E-05 6.2E-10 80.9 7.7 25 37-61 66-90 (447)
218 2yhs_A FTSY, cell division pro 97.8 0.00017 5.8E-09 74.3 12.7 83 140-231 376-462 (503)
219 1j8m_F SRP54, signal recogniti 97.7 0.00017 5.9E-09 69.9 11.6 81 139-229 180-261 (297)
220 1rj9_A FTSY, signal recognitio 97.7 3.9E-05 1.3E-09 74.8 6.2 86 140-230 185-270 (304)
221 1vma_A Cell division protein F 97.6 2.9E-05 9.9E-10 75.7 4.2 84 139-231 186-273 (306)
222 3e70_C DPA, signal recognition 97.6 0.00025 8.5E-09 69.7 10.7 80 140-230 212-291 (328)
223 2xxa_A Signal recognition part 97.6 0.00037 1.3E-08 71.2 12.0 79 139-229 183-262 (433)
224 2px0_A Flagellar biosynthesis 97.5 0.00073 2.5E-08 65.4 12.5 80 139-231 182-263 (296)
225 1zu4_A FTSY; GTPase, signal re 97.2 0.0022 7.7E-08 62.6 11.6 83 139-230 191-277 (320)
226 2og2_A Putative signal recogni 97.2 0.00096 3.3E-08 66.3 8.9 85 141-230 242-326 (359)
227 3b9q_A Chloroplast SRP recepto 97.1 0.00096 3.3E-08 64.7 7.4 85 141-230 185-269 (302)
228 2ffh_A Protein (FFH); SRP54, s 97.0 0.0017 5.9E-08 65.9 9.4 80 139-229 180-259 (425)
229 1ls1_A Signal recognition part 96.9 0.0026 8.9E-08 61.4 9.0 81 139-230 180-260 (295)
230 1t9h_A YLOQ, probable GTPase E 96.7 0.00063 2.1E-08 66.1 2.8 24 39-62 174-197 (307)
231 4ido_A Atlastin-1; GTPase, GTP 96.3 0.013 4.5E-07 59.6 9.6 23 37-59 66-88 (457)
232 2yv5_A YJEQ protein; hydrolase 96.0 0.01 3.4E-07 57.5 7.0 20 40-59 167-186 (302)
233 4dzz_A Plasmid partitioning pr 95.9 0.035 1.2E-06 49.6 9.5 64 139-220 75-143 (206)
234 1u0l_A Probable GTPase ENGC; p 95.5 0.0058 2E-07 59.1 3.0 67 141-222 64-130 (301)
235 3ney_A 55 kDa erythrocyte memb 95.5 0.0053 1.8E-07 55.6 2.2 37 39-75 20-58 (197)
236 3c8u_A Fructokinase; YP_612366 95.3 0.0071 2.4E-07 54.9 2.6 24 38-61 22-45 (208)
237 1ye8_A Protein THEP1, hypothet 95.3 0.0073 2.5E-07 53.6 2.7 22 40-61 2-23 (178)
238 1kgd_A CASK, peripheral plasma 95.3 0.0071 2.4E-07 53.6 2.4 22 40-61 7-28 (180)
239 2rcn_A Probable GTPase ENGC; Y 95.2 0.012 4E-07 58.4 4.0 23 40-62 217-239 (358)
240 1lvg_A Guanylate kinase, GMP k 95.2 0.0073 2.5E-07 54.5 2.4 22 40-61 6-27 (198)
241 1ex7_A Guanylate kinase; subst 95.1 0.0075 2.6E-07 54.0 2.1 35 41-75 4-40 (186)
242 1znw_A Guanylate kinase, GMP k 95.1 0.0083 2.8E-07 54.4 2.3 22 40-61 22-43 (207)
243 1zp6_A Hypothetical protein AT 95.1 0.01 3.6E-07 52.6 2.8 22 40-61 11-32 (191)
244 1sgw_A Putative ABC transporte 95.0 0.013 4.4E-07 53.7 3.4 23 40-62 37-59 (214)
245 4g1u_C Hemin import ATP-bindin 95.0 0.014 4.7E-07 55.4 3.7 23 40-62 39-61 (266)
246 3tau_A Guanylate kinase, GMP k 95.0 0.012 4E-07 53.5 3.0 23 39-61 9-31 (208)
247 3gfo_A Cobalt import ATP-bindi 95.0 0.013 4.5E-07 55.9 3.4 23 40-62 36-58 (275)
248 3tr0_A Guanylate kinase, GMP k 95.0 0.0096 3.3E-07 53.4 2.4 22 40-61 9-30 (205)
249 1g6h_A High-affinity branched- 95.0 0.013 4.5E-07 55.2 3.4 23 40-62 35-57 (257)
250 1u0l_A Probable GTPase ENGC; p 95.0 0.014 4.9E-07 56.3 3.8 24 39-62 170-193 (301)
251 1zcb_A G alpha I/13; GTP-bindi 94.9 0.02 6.9E-07 56.8 4.8 70 139-221 200-282 (362)
252 1mv5_A LMRA, multidrug resista 94.9 0.016 5.4E-07 54.2 3.8 23 40-62 30-52 (243)
253 3tif_A Uncharacterized ABC tra 94.9 0.013 4.3E-07 54.6 3.0 23 40-62 33-55 (235)
254 2pze_A Cystic fibrosis transme 94.9 0.015 5E-07 53.9 3.4 23 40-62 36-58 (229)
255 1b0u_A Histidine permease; ABC 94.8 0.015 5.1E-07 55.0 3.4 23 40-62 34-56 (262)
256 2d2e_A SUFC protein; ABC-ATPas 94.8 0.014 4.9E-07 54.7 3.2 22 40-61 31-52 (250)
257 1s96_A Guanylate kinase, GMP k 94.8 0.011 3.9E-07 54.3 2.4 24 39-62 17-40 (219)
258 1ji0_A ABC transporter; ATP bi 94.7 0.016 5.6E-07 54.0 3.4 23 40-62 34-56 (240)
259 3a00_A Guanylate kinase, GMP k 94.7 0.012 4E-07 52.4 2.3 22 40-61 3-24 (186)
260 2pcj_A ABC transporter, lipopr 94.7 0.013 4.5E-07 54.0 2.7 23 40-62 32-54 (224)
261 1vpl_A ABC transporter, ATP-bi 94.7 0.017 5.8E-07 54.5 3.4 23 40-62 43-65 (256)
262 2olj_A Amino acid ABC transpor 94.7 0.018 6E-07 54.6 3.4 23 40-62 52-74 (263)
263 1z6g_A Guanylate kinase; struc 94.6 0.013 4.3E-07 53.8 2.3 22 40-61 25-46 (218)
264 2nq2_C Hypothetical ABC transp 94.6 0.018 6E-07 54.2 3.4 31 40-72 33-63 (253)
265 2onk_A Molybdate/tungstate ABC 94.6 0.017 5.7E-07 53.9 3.1 24 39-62 25-48 (240)
266 1np6_A Molybdopterin-guanine d 94.6 0.016 5.5E-07 51.3 2.8 25 37-61 5-29 (174)
267 1odf_A YGR205W, hypothetical 3 94.6 0.033 1.1E-06 53.5 5.2 25 37-61 30-54 (290)
268 2cbz_A Multidrug resistance-as 94.6 0.017 5.7E-07 53.8 3.0 23 40-62 33-55 (237)
269 2gza_A Type IV secretion syste 94.6 0.017 5.8E-07 57.4 3.2 30 40-71 177-206 (361)
270 4gp7_A Metallophosphoesterase; 94.6 0.018 6.1E-07 50.5 3.0 21 40-60 11-31 (171)
271 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.015 5E-07 57.1 2.7 30 40-71 173-202 (330)
272 2ihy_A ABC transporter, ATP-bi 94.6 0.019 6.6E-07 54.8 3.4 23 40-62 49-71 (279)
273 2zu0_C Probable ATP-dependent 94.5 0.019 6.4E-07 54.5 3.2 23 40-62 48-70 (267)
274 2ixe_A Antigen peptide transpo 94.5 0.02 6.8E-07 54.5 3.4 23 40-62 47-69 (271)
275 2qi9_C Vitamin B12 import ATP- 94.4 0.02 6.7E-07 53.8 3.1 23 40-62 28-50 (249)
276 2ff7_A Alpha-hemolysin translo 94.4 0.02 6.7E-07 53.7 3.0 23 40-62 37-59 (247)
277 1cip_A Protein (guanine nucleo 94.4 0.022 7.6E-07 56.3 3.5 70 139-221 192-274 (353)
278 2oap_1 GSPE-2, type II secreti 94.3 0.017 5.9E-07 60.0 2.7 31 40-72 262-292 (511)
279 1htw_A HI0065; nucleotide-bind 94.3 0.017 5.9E-07 50.2 2.3 23 40-62 35-57 (158)
280 2ghi_A Transport protein; mult 94.2 0.022 7.6E-07 53.8 3.0 23 40-62 48-70 (260)
281 1kag_A SKI, shikimate kinase I 94.2 0.019 6.4E-07 50.0 2.4 23 39-61 5-27 (173)
282 2yv5_A YJEQ protein; hydrolase 94.2 0.013 4.5E-07 56.6 1.5 55 168-222 71-125 (302)
283 3asz_A Uridine kinase; cytidin 94.2 0.016 5.5E-07 52.3 1.9 22 40-61 8-29 (211)
284 2j41_A Guanylate kinase; GMP, 94.1 0.02 6.8E-07 51.3 2.5 24 39-62 7-30 (207)
285 2eyu_A Twitching motility prot 94.1 0.019 6.5E-07 54.3 2.4 22 40-61 27-48 (261)
286 1puj_A YLQF, conserved hypothe 94.1 0.048 1.6E-06 52.1 5.2 53 166-222 13-65 (282)
287 2bbw_A Adenylate kinase 4, AK4 94.1 0.031 1.1E-06 52.0 3.8 26 38-63 27-55 (246)
288 2yz2_A Putative ABC transporte 94.1 0.025 8.4E-07 53.6 3.0 23 40-62 35-57 (266)
289 4fid_A G protein alpha subunit 94.1 0.05 1.7E-06 53.4 5.3 71 138-221 159-242 (340)
290 2v9p_A Replication protein E1; 94.0 0.021 7.1E-07 55.3 2.5 22 40-61 128-149 (305)
291 3lw7_A Adenylate kinase relate 94.0 0.03 1E-06 48.3 3.2 20 39-58 2-21 (179)
292 3b85_A Phosphate starvation-in 93.9 0.018 6.2E-07 52.5 1.7 22 40-61 24-45 (208)
293 2bdt_A BH3686; alpha-beta prot 93.9 0.023 7.7E-07 50.4 2.3 21 40-60 4-24 (189)
294 4eun_A Thermoresistant glucoki 93.9 0.023 7.9E-07 51.0 2.4 23 39-61 30-52 (200)
295 2f1r_A Molybdopterin-guanine d 93.8 0.013 4.5E-07 51.7 0.6 23 39-61 3-25 (171)
296 2pjz_A Hypothetical protein ST 93.7 0.036 1.2E-06 52.4 3.4 25 40-66 32-56 (263)
297 4a74_A DNA repair and recombin 93.7 0.036 1.2E-06 50.4 3.4 30 40-69 27-56 (231)
298 1rz3_A Hypothetical protein rb 93.7 0.048 1.6E-06 49.0 4.1 23 39-61 23-45 (201)
299 3nh6_A ATP-binding cassette SU 93.6 0.026 8.7E-07 54.7 2.2 23 40-62 82-104 (306)
300 1knq_A Gluconate kinase; ALFA/ 93.6 0.029 9.8E-07 49.0 2.3 22 39-60 9-30 (175)
301 3kb2_A SPBC2 prophage-derived 93.5 0.039 1.3E-06 47.7 3.1 22 39-60 2-23 (173)
302 2i3b_A HCR-ntpase, human cance 93.5 0.03 1E-06 50.1 2.4 22 40-61 3-24 (189)
303 3aez_A Pantothenate kinase; tr 93.5 0.029 9.8E-07 54.5 2.4 22 40-61 92-113 (312)
304 2qor_A Guanylate kinase; phosp 93.5 0.036 1.2E-06 49.9 2.9 25 37-61 11-35 (204)
305 3lnc_A Guanylate kinase, GMP k 93.5 0.024 8.1E-07 52.2 1.7 22 40-61 29-51 (231)
306 3l82_B F-box only protein 4; T 93.5 0.13 4.4E-06 46.8 6.4 109 142-259 98-217 (227)
307 3ohm_A Guanine nucleotide-bind 93.4 0.049 1.7E-06 53.2 3.9 70 139-221 166-248 (327)
308 3jvv_A Twitching mobility prot 93.4 0.03 1E-06 55.5 2.3 22 40-61 125-146 (356)
309 1cke_A CK, MSSA, protein (cyti 93.4 0.035 1.2E-06 50.6 2.7 23 39-61 6-28 (227)
310 2bbs_A Cystic fibrosis transme 93.3 0.035 1.2E-06 53.3 2.7 23 40-62 66-88 (290)
311 3kta_A Chromosome segregation 93.2 0.038 1.3E-06 48.6 2.5 24 38-61 26-49 (182)
312 1xjc_A MOBB protein homolog; s 93.1 0.055 1.9E-06 47.6 3.4 25 37-61 3-27 (169)
313 3uie_A Adenylyl-sulfate kinase 93.0 0.039 1.3E-06 49.5 2.3 23 39-61 26-48 (200)
314 4e22_A Cytidylate kinase; P-lo 93.0 0.038 1.3E-06 51.7 2.3 26 38-63 27-55 (252)
315 2jeo_A Uridine-cytidine kinase 92.9 0.039 1.3E-06 51.3 2.3 22 40-61 27-48 (245)
316 2jaq_A Deoxyguanosine kinase; 92.9 0.056 1.9E-06 48.1 3.3 21 40-60 2-22 (205)
317 1jjv_A Dephospho-COA kinase; P 92.9 0.052 1.8E-06 48.8 3.0 21 40-60 4-24 (206)
318 1ly1_A Polynucleotide kinase; 92.9 0.052 1.8E-06 47.3 2.9 21 40-60 4-24 (181)
319 3tui_C Methionine import ATP-b 92.8 0.052 1.8E-06 53.8 3.1 23 40-62 56-78 (366)
320 1lw7_A Transcriptional regulat 92.8 0.039 1.3E-06 54.6 2.2 24 39-62 171-194 (365)
321 1azs_C GS-alpha; complex (lyas 92.8 0.082 2.8E-06 53.1 4.5 70 139-221 216-298 (402)
322 3t61_A Gluconokinase; PSI-biol 92.8 0.045 1.5E-06 49.1 2.4 23 38-60 18-40 (202)
323 2if2_A Dephospho-COA kinase; a 92.8 0.044 1.5E-06 49.1 2.3 21 40-60 3-23 (204)
324 1z47_A CYSA, putative ABC-tran 92.8 0.052 1.8E-06 53.6 3.0 23 40-62 43-65 (355)
325 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.055 1.9E-06 46.3 2.7 22 38-59 23-44 (149)
326 2qt1_A Nicotinamide riboside k 92.7 0.054 1.9E-06 48.7 2.8 23 39-61 22-44 (207)
327 1p9r_A General secretion pathw 92.6 0.044 1.5E-06 55.4 2.3 22 40-61 169-190 (418)
328 2yyz_A Sugar ABC transporter, 92.6 0.056 1.9E-06 53.5 3.0 23 40-62 31-53 (359)
329 2it1_A 362AA long hypothetical 92.6 0.057 1.9E-06 53.5 3.1 23 40-62 31-53 (362)
330 3fvq_A Fe(3+) IONS import ATP- 92.6 0.051 1.7E-06 53.8 2.6 23 40-62 32-54 (359)
331 2ewv_A Twitching motility prot 92.6 0.045 1.5E-06 54.5 2.3 22 40-61 138-159 (372)
332 3rlf_A Maltose/maltodextrin im 92.5 0.059 2E-06 53.7 3.1 23 40-62 31-53 (381)
333 3ec2_A DNA replication protein 92.5 0.043 1.5E-06 48.2 1.8 23 39-61 39-61 (180)
334 1g29_1 MALK, maltose transport 92.5 0.06 2.1E-06 53.5 3.0 23 40-62 31-53 (372)
335 1sq5_A Pantothenate kinase; P- 92.4 0.046 1.6E-06 52.8 2.0 22 40-61 82-103 (308)
336 1v43_A Sugar-binding transport 92.3 0.065 2.2E-06 53.3 3.1 23 40-62 39-61 (372)
337 2kjq_A DNAA-related protein; s 92.3 0.048 1.6E-06 46.7 1.8 24 38-61 36-59 (149)
338 1nij_A Hypothetical protein YJ 92.3 0.036 1.2E-06 53.9 1.2 26 37-62 3-28 (318)
339 1qhx_A CPT, protein (chloramph 92.3 0.07 2.4E-06 46.5 2.9 22 40-61 5-26 (178)
340 2vp4_A Deoxynucleoside kinase; 92.2 0.056 1.9E-06 49.7 2.3 22 40-61 22-43 (230)
341 1kht_A Adenylate kinase; phosp 92.1 0.074 2.5E-06 46.7 2.9 22 39-60 4-25 (192)
342 1nks_A Adenylate kinase; therm 92.1 0.065 2.2E-06 47.1 2.5 21 40-60 3-23 (194)
343 2ehv_A Hypothetical protein PH 92.1 0.072 2.5E-06 49.0 2.9 21 40-60 32-52 (251)
344 3d31_A Sulfate/molybdate ABC t 92.1 0.053 1.8E-06 53.4 2.1 23 40-62 28-50 (348)
345 1y63_A LMAJ004144AAA protein; 91.9 0.096 3.3E-06 46.2 3.5 25 37-61 9-33 (184)
346 3vaa_A Shikimate kinase, SK; s 91.9 0.09 3.1E-06 47.0 3.3 22 39-60 26-47 (199)
347 2iyv_A Shikimate kinase, SK; t 91.9 0.08 2.7E-06 46.5 2.9 21 39-59 3-23 (184)
348 2xtz_A Guanine nucleotide-bind 91.9 0.064 2.2E-06 53.0 2.4 70 139-221 182-264 (354)
349 3trf_A Shikimate kinase, SK; a 91.9 0.091 3.1E-06 46.1 3.2 22 38-59 5-26 (185)
350 3cm0_A Adenylate kinase; ATP-b 91.8 0.086 3E-06 46.2 2.9 20 40-59 6-25 (186)
351 3qf7_A RAD50; ABC-ATPase, ATPa 91.8 0.083 2.8E-06 52.4 3.1 23 37-59 22-44 (365)
352 1via_A Shikimate kinase; struc 91.8 0.089 3.1E-06 45.8 3.0 22 39-60 5-26 (175)
353 2plr_A DTMP kinase, probable t 91.6 0.091 3.1E-06 47.0 2.9 22 39-60 5-26 (213)
354 3tqc_A Pantothenate kinase; bi 91.6 0.072 2.5E-06 51.8 2.4 22 40-61 94-115 (321)
355 2v54_A DTMP kinase, thymidylat 91.6 0.1 3.5E-06 46.5 3.2 23 39-61 5-27 (204)
356 2rhm_A Putative kinase; P-loop 91.6 0.08 2.7E-06 46.6 2.5 22 39-60 6-27 (193)
357 3gd7_A Fusion complex of cysti 91.6 0.078 2.7E-06 53.0 2.6 23 40-62 49-71 (390)
358 1oxx_K GLCV, glucose, ABC tran 91.5 0.052 1.8E-06 53.6 1.3 23 40-62 33-55 (353)
359 3fb4_A Adenylate kinase; psych 91.5 0.097 3.3E-06 47.2 3.1 20 40-59 2-21 (216)
360 3iij_A Coilin-interacting nucl 91.5 0.1 3.6E-06 45.6 3.2 23 37-59 10-32 (180)
361 2c95_A Adenylate kinase 1; tra 91.5 0.1 3.5E-06 46.1 3.1 23 37-59 8-30 (196)
362 2npi_A Protein CLP1; CLP1-PCF1 91.4 0.071 2.4E-06 54.6 2.1 26 37-62 137-162 (460)
363 2z0h_A DTMP kinase, thymidylat 91.3 0.1 3.4E-06 46.2 2.9 21 40-60 2-22 (197)
364 3dl0_A Adenylate kinase; phosp 91.2 0.11 3.8E-06 46.9 3.1 21 40-60 2-22 (216)
365 1e6c_A Shikimate kinase; phosp 91.2 0.11 3.9E-06 44.8 3.0 22 39-60 3-24 (173)
366 2pt5_A Shikimate kinase, SK; a 91.2 0.12 4.2E-06 44.4 3.2 21 40-60 2-22 (168)
367 1t9h_A YLOQ, probable GTPase E 91.1 0.098 3.3E-06 50.6 2.8 53 170-223 80-133 (307)
368 2x8a_A Nuclear valosin-contain 91.1 0.087 3E-06 50.0 2.3 21 41-61 47-67 (274)
369 3h2y_A GTPase family protein; 91.1 0.15 5.2E-06 50.5 4.2 56 164-223 57-112 (368)
370 1in4_A RUVB, holliday junction 91.1 0.14 4.8E-06 49.9 3.9 24 38-61 51-74 (334)
371 2pbr_A DTMP kinase, thymidylat 91.0 0.11 3.8E-06 45.7 2.9 21 40-60 2-22 (195)
372 2pez_A Bifunctional 3'-phospho 91.0 0.094 3.2E-06 45.9 2.4 22 40-61 7-28 (179)
373 2ga8_A Hypothetical 39.9 kDa p 90.9 0.23 7.9E-06 48.8 5.2 25 37-61 23-47 (359)
374 1tev_A UMP-CMP kinase; ploop, 90.9 0.12 4.1E-06 45.4 2.9 20 40-59 5-24 (196)
375 1yqt_A RNAse L inhibitor; ATP- 90.9 0.15 5.2E-06 53.3 4.1 23 40-62 314-336 (538)
376 1ixz_A ATP-dependent metallopr 90.8 0.097 3.3E-06 48.6 2.4 21 41-61 52-72 (254)
377 3ozx_A RNAse L inhibitor; ATP 90.8 0.14 4.8E-06 53.5 3.8 23 40-62 296-318 (538)
378 2wwf_A Thymidilate kinase, put 90.8 0.1 3.6E-06 46.7 2.5 23 38-60 10-32 (212)
379 1yqt_A RNAse L inhibitor; ATP- 90.7 0.12 4.2E-06 54.0 3.3 23 40-62 49-71 (538)
380 1gvn_B Zeta; postsegregational 90.7 0.29 9.9E-06 46.6 5.6 21 40-60 35-55 (287)
381 1gtv_A TMK, thymidylate kinase 90.7 0.054 1.9E-06 48.7 0.4 22 40-61 2-23 (214)
382 2w0m_A SSO2452; RECA, SSPF, un 90.7 0.1 3.5E-06 47.3 2.3 22 40-61 25-46 (235)
383 2bwj_A Adenylate kinase 5; pho 90.6 0.13 4.4E-06 45.6 2.9 23 38-60 12-34 (199)
384 2yvu_A Probable adenylyl-sulfa 90.6 0.13 4.5E-06 45.2 2.9 23 39-61 14-36 (186)
385 1nn5_A Similar to deoxythymidy 90.6 0.11 3.8E-06 46.6 2.5 22 39-60 10-31 (215)
386 3ozx_A RNAse L inhibitor; ATP 90.5 0.13 4.3E-06 53.9 3.1 23 40-62 27-49 (538)
387 1zd8_A GTP:AMP phosphotransfer 90.4 0.14 4.7E-06 46.8 3.0 24 37-60 6-29 (227)
388 3a4m_A L-seryl-tRNA(SEC) kinas 90.4 0.14 4.8E-06 48.0 3.1 23 38-60 4-26 (260)
389 3bk7_A ABC transporter ATP-bin 90.4 0.17 6E-06 53.6 4.1 23 40-62 384-406 (607)
390 2p5t_B PEZT; postsegregational 90.3 0.25 8.6E-06 46.0 4.7 23 39-61 33-55 (253)
391 3qks_A DNA double-strand break 90.1 0.16 5.4E-06 45.8 3.1 23 37-59 22-44 (203)
392 1e4v_A Adenylate kinase; trans 90.1 0.14 4.9E-06 46.2 2.8 21 40-60 2-22 (214)
393 1cr0_A DNA primase/helicase; R 90.1 0.11 3.6E-06 49.7 1.9 22 40-61 37-58 (296)
394 3j16_B RLI1P; ribosome recycli 90.1 0.14 4.8E-06 54.3 3.1 23 40-62 105-127 (608)
395 1jbk_A CLPB protein; beta barr 90.1 0.37 1.3E-05 41.6 5.4 24 38-61 43-66 (195)
396 2cdn_A Adenylate kinase; phosp 90.1 0.16 5.3E-06 45.4 2.9 21 40-60 22-42 (201)
397 1vht_A Dephospho-COA kinase; s 90.0 0.15 5.2E-06 46.0 2.9 22 39-60 5-26 (218)
398 1ukz_A Uridylate kinase; trans 90.0 0.17 5.7E-06 45.1 3.1 23 38-60 15-37 (203)
399 1aky_A Adenylate kinase; ATP:A 90.0 0.17 6E-06 45.8 3.3 23 38-60 4-26 (220)
400 2vli_A Antibiotic resistance p 90.0 0.13 4.5E-06 44.8 2.4 21 39-59 6-26 (183)
401 3euj_A Chromosome partition pr 90.0 0.12 4.2E-06 53.1 2.4 24 39-62 30-53 (483)
402 3b5x_A Lipid A export ATP-bind 89.9 0.15 5.2E-06 53.8 3.2 23 40-62 371-393 (582)
403 4a82_A Cystic fibrosis transme 89.9 0.13 4.3E-06 54.4 2.5 23 40-62 369-391 (578)
404 1uf9_A TT1252 protein; P-loop, 89.9 0.16 5.4E-06 45.1 2.8 25 37-61 7-31 (203)
405 4b4t_L 26S protease subunit RP 89.9 1.1 3.6E-05 45.5 9.2 22 40-61 217-238 (437)
406 1qf9_A UMP/CMP kinase, protein 89.9 0.14 4.8E-06 44.9 2.5 22 39-60 7-28 (194)
407 3bk7_A ABC transporter ATP-bin 89.9 0.16 5.5E-06 53.9 3.3 23 40-62 119-141 (607)
408 3b60_A Lipid A export ATP-bind 89.8 0.14 4.9E-06 53.9 2.9 23 40-62 371-393 (582)
409 1iy2_A ATP-dependent metallopr 89.8 0.13 4.6E-06 48.5 2.4 21 41-61 76-96 (278)
410 3l2o_B F-box only protein 4; s 89.7 0.55 1.9E-05 44.8 6.5 107 146-261 187-304 (312)
411 3ake_A Cytidylate kinase; CMP 89.7 0.19 6.4E-06 44.8 3.2 22 39-60 3-24 (208)
412 1zak_A Adenylate kinase; ATP:A 89.7 0.17 5.7E-06 46.0 2.9 23 38-60 5-27 (222)
413 3qf4_B Uncharacterized ABC tra 89.6 0.14 4.8E-06 54.2 2.6 23 40-62 383-405 (598)
414 2yl4_A ATP-binding cassette SU 89.5 0.14 4.7E-06 54.3 2.5 23 40-62 372-394 (595)
415 3qf4_A ABC transporter, ATP-bi 89.5 0.15 5E-06 53.9 2.7 23 40-62 371-393 (587)
416 3nwj_A ATSK2; P loop, shikimat 89.4 0.15 5.1E-06 47.7 2.4 23 38-60 48-70 (250)
417 1svm_A Large T antigen; AAA+ f 89.3 0.15 5E-06 50.8 2.3 22 40-61 171-192 (377)
418 3thx_A DNA mismatch repair pro 89.1 2 6.7E-05 47.8 11.4 19 40-58 664-682 (934)
419 2xb4_A Adenylate kinase; ATP-b 89.1 0.22 7.6E-06 45.4 3.3 21 40-60 2-22 (223)
420 3tlx_A Adenylate kinase 2; str 89.1 0.21 7.2E-06 46.3 3.1 23 38-60 29-51 (243)
421 1zuh_A Shikimate kinase; alpha 89.1 0.21 7.2E-06 43.0 2.9 22 38-59 7-28 (168)
422 1m7g_A Adenylylsulfate kinase; 88.9 0.17 5.8E-06 45.6 2.3 23 39-61 26-48 (211)
423 2ze6_A Isopentenyl transferase 88.9 0.21 7.1E-06 46.7 2.9 21 40-60 3-23 (253)
424 2cvh_A DNA repair and recombin 88.9 0.17 5.9E-06 45.4 2.3 21 40-60 22-42 (220)
425 3qkt_A DNA double-strand break 88.7 0.19 6.6E-06 49.1 2.7 23 37-59 22-44 (339)
426 1n0w_A DNA repair protein RAD5 88.7 0.18 6.1E-06 46.1 2.4 26 40-65 26-51 (243)
427 1fnn_A CDC6P, cell division co 88.7 0.39 1.3E-05 47.1 5.0 24 38-61 44-67 (389)
428 1tue_A Replication protein E1; 88.6 0.37 1.3E-05 43.6 4.3 21 40-60 60-80 (212)
429 2grj_A Dephospho-COA kinase; T 88.6 0.23 7.8E-06 44.4 2.9 22 39-60 13-34 (192)
430 3n70_A Transport activator; si 88.4 0.63 2.2E-05 39.1 5.5 22 40-61 26-47 (145)
431 3be4_A Adenylate kinase; malar 88.4 0.24 8E-06 44.9 2.9 21 39-59 6-26 (217)
432 1ak2_A Adenylate kinase isoenz 88.4 0.3 1E-05 44.8 3.6 23 38-60 16-38 (233)
433 4eaq_A DTMP kinase, thymidylat 88.3 0.25 8.4E-06 45.5 2.9 23 39-61 27-49 (229)
434 3j16_B RLI1P; ribosome recycli 88.2 0.23 8E-06 52.6 3.1 22 41-62 381-402 (608)
435 2obl_A ESCN; ATPase, hydrolase 88.2 0.19 6.4E-06 49.5 2.2 23 40-62 73-95 (347)
436 1e69_A Chromosome segregation 88.0 0.23 7.9E-06 48.1 2.7 24 37-60 23-46 (322)
437 2o5v_A DNA replication and rep 87.8 0.23 7.7E-06 49.1 2.5 25 37-61 25-49 (359)
438 4b4t_K 26S protease regulatory 87.8 1 3.5E-05 45.4 7.4 25 37-61 204-229 (428)
439 1qhl_A Protein (cell division 87.7 0.06 2E-06 49.7 -1.6 22 41-62 30-51 (227)
440 4aby_A DNA repair protein RECN 87.7 0.091 3.1E-06 52.7 -0.4 25 37-61 59-83 (415)
441 1sxj_E Activator 1 40 kDa subu 87.6 0.22 7.5E-06 48.5 2.3 25 37-61 35-59 (354)
442 1uj2_A Uridine-cytidine kinase 87.3 0.31 1E-05 45.3 3.0 22 39-60 23-44 (252)
443 2dpy_A FLII, flagellum-specifi 87.3 0.22 7.6E-06 50.6 2.2 23 40-62 159-181 (438)
444 3sr0_A Adenylate kinase; phosp 87.3 0.34 1.2E-05 43.8 3.2 22 40-61 2-23 (206)
445 3r20_A Cytidylate kinase; stru 87.2 0.35 1.2E-05 44.6 3.3 22 38-59 9-30 (233)
446 1q3t_A Cytidylate kinase; nucl 87.1 0.31 1.1E-05 44.7 3.0 24 37-60 15-38 (236)
447 1w1w_A Structural maintenance 86.9 0.28 9.5E-06 49.6 2.7 24 39-62 27-50 (430)
448 1ltq_A Polynucleotide kinase; 86.9 0.32 1.1E-05 46.3 2.9 21 40-60 4-24 (301)
449 3umf_A Adenylate kinase; rossm 86.8 0.38 1.3E-05 43.9 3.3 23 38-60 29-51 (217)
450 1lv7_A FTSH; alpha/beta domain 86.8 0.27 9.4E-06 45.6 2.4 22 40-61 47-68 (257)
451 2w58_A DNAI, primosome compone 86.7 1.1 3.8E-05 39.5 6.3 23 39-61 55-77 (202)
452 1nlf_A Regulatory protein REPA 86.6 0.25 8.5E-06 46.7 1.9 21 40-60 32-52 (279)
453 3pfi_A Holliday junction ATP-d 86.5 0.66 2.3E-05 44.8 5.1 25 37-61 54-78 (338)
454 2f6r_A COA synthase, bifunctio 86.5 0.37 1.2E-05 45.7 3.1 20 40-59 77-96 (281)
455 1njg_A DNA polymerase III subu 86.4 0.75 2.5E-05 41.2 5.1 21 40-60 47-67 (250)
456 3auy_A DNA double-strand break 86.3 0.32 1.1E-05 48.1 2.7 23 37-59 24-46 (371)
457 3ec1_A YQEH GTPase; atnos1, at 86.3 0.43 1.5E-05 47.2 3.6 54 166-223 61-114 (369)
458 3bos_A Putative DNA replicatio 86.3 0.41 1.4E-05 43.3 3.2 24 38-61 52-75 (242)
459 2iw3_A Elongation factor 3A; a 86.2 0.24 8.4E-06 55.1 1.9 23 40-62 701-723 (986)
460 2ius_A DNA translocase FTSK; n 86.0 0.36 1.2E-05 50.0 2.9 24 37-60 166-189 (512)
461 2chg_A Replication factor C sm 86.0 0.43 1.5E-05 42.3 3.2 24 38-61 38-61 (226)
462 1sxj_C Activator 1 40 kDa subu 85.9 0.33 1.1E-05 47.2 2.6 25 37-61 45-69 (340)
463 3co5_A Putative two-component 85.7 0.68 2.3E-05 38.8 4.1 22 40-61 29-50 (143)
464 2p65_A Hypothetical protein PF 85.7 0.35 1.2E-05 41.7 2.4 24 38-61 43-66 (187)
465 3cnl_A YLQF, putative uncharac 85.3 0.26 9E-06 46.3 1.4 50 167-222 12-61 (262)
466 4f4c_A Multidrug resistance pr 85.3 0.28 9.6E-06 56.9 1.9 51 164-216 1223-1274(1321)
467 1p5z_B DCK, deoxycytidine kina 85.2 0.38 1.3E-05 44.9 2.5 25 37-61 23-47 (263)
468 4f4c_A Multidrug resistance pr 85.1 0.38 1.3E-05 55.8 2.9 23 40-62 446-468 (1321)
469 4b4t_J 26S protease regulatory 85.0 1.5 5.2E-05 43.8 6.8 22 40-61 184-205 (405)
470 2qz4_A Paraplegin; AAA+, SPG7, 84.9 1.3 4.3E-05 40.8 6.0 23 38-60 39-61 (262)
471 2dhr_A FTSH; AAA+ protein, hex 84.7 0.69 2.3E-05 47.7 4.3 22 40-61 66-87 (499)
472 1a7j_A Phosphoribulokinase; tr 84.5 0.32 1.1E-05 46.4 1.6 24 37-60 4-27 (290)
473 1a5t_A Delta prime, HOLB; zinc 84.3 22 0.00075 34.0 14.9 24 37-60 22-46 (334)
474 4b4t_I 26S protease regulatory 84.2 2.5 8.5E-05 42.6 8.0 22 40-61 218-239 (437)
475 3g5u_A MCG1178, multidrug resi 84.2 0.47 1.6E-05 54.9 3.1 23 40-62 418-440 (1284)
476 3cr8_A Sulfate adenylyltranfer 83.9 0.28 9.5E-06 51.4 0.9 22 40-61 371-392 (552)
477 3h4m_A Proteasome-activating n 83.7 0.76 2.6E-05 43.1 3.9 24 38-61 51-74 (285)
478 3zvl_A Bifunctional polynucleo 83.6 0.67 2.3E-05 46.6 3.6 22 39-60 259-280 (416)
479 3bfv_A CAPA1, CAPB2, membrane 83.6 1.1 3.8E-05 42.1 5.0 65 140-220 192-257 (271)
480 2ocp_A DGK, deoxyguanosine kin 83.4 0.52 1.8E-05 43.3 2.5 22 40-61 4-25 (241)
481 3syl_A Protein CBBX; photosynt 83.3 1.7 5.9E-05 41.1 6.3 23 38-60 67-89 (309)
482 2qmh_A HPR kinase/phosphorylas 83.1 0.65 2.2E-05 41.8 2.9 24 38-61 34-57 (205)
483 2iw3_A Elongation factor 3A; a 83.0 0.49 1.7E-05 52.7 2.5 23 40-62 463-485 (986)
484 3ux8_A Excinuclease ABC, A sub 82.8 0.46 1.6E-05 50.9 2.2 20 40-59 350-369 (670)
485 2rcn_A Probable GTPase ENGC; Y 82.8 0.52 1.8E-05 46.5 2.3 49 174-223 128-176 (358)
486 2ph1_A Nucleotide-binding prot 82.6 4 0.00014 37.7 8.4 66 139-219 128-194 (262)
487 1pzn_A RAD51, DNA repair and r 82.4 0.48 1.6E-05 46.5 1.9 26 40-65 133-158 (349)
488 4fcw_A Chaperone protein CLPB; 82.4 1.4 4.7E-05 41.8 5.2 22 40-61 49-70 (311)
489 2dr3_A UPF0273 protein PH0284; 82.4 0.61 2.1E-05 42.5 2.6 21 40-60 25-45 (247)
490 1d2n_A N-ethylmaleimide-sensit 82.3 1.4 4.9E-05 41.0 5.2 25 37-61 63-87 (272)
491 4ag6_A VIRB4 ATPase, type IV s 82.3 0.76 2.6E-05 45.6 3.4 26 37-62 34-59 (392)
492 2qby_A CDC6 homolog 1, cell di 82.2 0.8 2.7E-05 44.6 3.5 24 38-61 45-68 (386)
493 3k9g_A PF-32 protein; ssgcid, 82.2 6.7 0.00023 36.1 9.8 88 139-248 144-233 (267)
494 3a8t_A Adenylate isopentenyltr 82.0 1.1 3.8E-05 43.6 4.4 23 39-61 41-63 (339)
495 3la6_A Tyrosine-protein kinase 82.0 1.7 5.9E-05 41.2 5.7 66 140-221 202-268 (286)
496 3thx_B DNA mismatch repair pro 81.9 1 3.5E-05 50.0 4.5 21 40-60 675-695 (918)
497 2iut_A DNA translocase FTSK; n 81.9 0.69 2.4E-05 48.3 3.0 24 37-60 213-236 (574)
498 3d3q_A TRNA delta(2)-isopenten 81.9 0.69 2.4E-05 45.2 2.8 23 39-61 8-30 (340)
499 4edh_A DTMP kinase, thymidylat 81.9 0.75 2.5E-05 41.7 2.9 22 39-60 7-28 (213)
500 1bif_A 6-phosphofructo-2-kinas 81.8 0.73 2.5E-05 47.1 3.1 23 39-61 40-62 (469)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.5e-70 Score=592.37 Aligned_cols=438 Identities=45% Similarity=0.734 Sum_probs=399.9
Q ss_pred hhhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEee
Q 012279 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (467)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~ 82 (467)
+|++|++++|+||+.+..+|.... .++|+|+|||.+|+|||||+|+|+|.++||++.++|||+|+++++.+
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~---------i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~ 95 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGG---------GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCcccc---------CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec
Confidence 599999999999999999986543 69999999999999999999999999999999999999999999998
Q ss_pred cCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccH
Q 012279 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (467)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~ 162 (467)
.+. +|+.+.+..+..++++++++.++...++...|.+++++.+++.+++++|+.++++||||||+.+.+..+||.++
T Consensus 96 ~~~---~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di 172 (772)
T 3zvr_A 96 STT---EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 172 (772)
T ss_dssp CSS---CEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH
T ss_pred CCc---chhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHH
Confidence 763 67788888899999999999999999999999999999999999999999999999999999998888889988
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeE
Q 012279 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (467)
Q Consensus 163 ~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~ 242 (467)
.+.+.+++..|+.+..++||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.+..+++++||.
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 252 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCC
Confidence 88999999999987777999999999999888888899999999999999999999998877767777766677788999
Q ss_pred EEEeCChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012279 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (467)
Q Consensus 243 ~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~ 322 (467)
+|+++|+.+..+..++.++...|..||.++|+|..+.++.|+..|++.|++++..|++++||+++.+|+.++..++.+++
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele 332 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVD 332 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHH
Confidence 99999999888888888998889999999999998899999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC--------CCCcchhhhcchhhHHHhccCCccccCCHHHHHHHH
Q 012279 323 HLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVV 394 (467)
Q Consensus 323 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~~~~ri~~~f~~~~~~~~~~~~~~~~~~~~~i~~ii 394 (467)
++|.+++.++.++..++++++++|++.|.++++|.+ .||+||+++|++.|+..++++++++.+++++|+++|
T Consensus 333 ~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i 412 (772)
T 3zvr_A 333 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAI 412 (772)
T ss_dssp HHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHH
Confidence 999887777777777899999999999999999997 589999999999999999999999999999999999
Q ss_pred HhhCCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 012279 395 SEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQVELYK 454 (467)
Q Consensus 395 ~~~~g~~p~~~~pe~~f~~li~~~i~~~~~P~~~~~~~v~~~l~~~v~~~~~~~~~~~~~ 454 (467)
+|++|++|++|+|+.+|+.|+++||++|++||++||+.|+++|.++|++|.. .+.+||
T Consensus 413 ~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~~--~l~RfP 470 (772)
T 3zvr_A 413 KNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCSE--KLQQYP 470 (772)
T ss_dssp HHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHGG--GGTTCH
T ss_pred HhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccH
Confidence 9999999999999999999999999999999999999999999999999953 355555
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=7.9e-57 Score=482.89 Aligned_cols=417 Identities=30% Similarity=0.469 Sum_probs=347.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhc--CCCCcccChHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLH--LPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~i~~ 113 (467)
.++|+|+|||++|||||||+++|+|. .+|+++|.||++++.+.+.+.+... .|....+ .....+.++..+.+.+..
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~-~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNED-KWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSS-CCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccc-cceeEEeeecccccCCCHHHHHHHHHH
Confidence 58999999999999999999999998 4799999999999999887654321 1111111 112345677788888887
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~ 193 (467)
......+.+.+++...+.+.+.++..++++|+|+||+...++.+++......+.+++.+|+.++.++++++++++.|+++
T Consensus 121 ~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 121 AQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp HHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT
T ss_pred HHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc
Confidence 77777777889999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCCc--HHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHHHHHhhhcc
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFAT 271 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~ 271 (467)
+.++++++.+++.|.|||+|+||+|++++++. +.+++.|+.+++++||++|+|+++.++....++.++...|..||.+
T Consensus 201 ~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~~~~~~~~~~~~~E~~fF~~ 280 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFEN 280 (608)
T ss_dssp CHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCTTTCCCHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhcccCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999988764 6788889999999999999999999999999999999999999999
Q ss_pred CCCCCchhh--ccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH
Q 012279 272 SPDYGHLAG--KMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRI 349 (467)
Q Consensus 272 ~~~~~~~~~--~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~lg~~~~~~~~~~~~~l~~~~~~f~~~ 349 (467)
++||+.+.+ ++|+++|+++|++.|.+||+++||.++.+|+..+.+++++|++||.++++++.++..++++++++|++.
T Consensus 281 ~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~ 360 (608)
T 3szr_A 281 HPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQD 360 (608)
T ss_dssp CTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999998764 899999999999999999999999999999999999999999999988888888888999999999999
Q ss_pred HHHhhcCCCCCC---cchhhhcchhhHHHhccCCc----cccCCHHHHHHHHHhhCCCCCcccCChHHHHHHHHHHHhhh
Q 012279 350 FKEHLDGGRPGG---DRIYGVFDNQLPAALRKLPF----DRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYF 422 (467)
Q Consensus 350 ~~~~i~g~~~~~---~ri~~~f~~~~~~~~~~~~~----~~~~~~~~i~~ii~~~~g~~p~~~~pe~~f~~li~~~i~~~ 422 (467)
+.++++|.+..+ .+++..+++.|..+...+.. ......++|++.++|++|.+++.|+|+.+|+.|+++|+++|
T Consensus 361 ~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l 440 (608)
T 3szr_A 361 ITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKAL 440 (608)
T ss_dssp HHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGG
T ss_pred HHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999997432 46777777777776554321 12244678999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 012279 423 RGPAEASADAVHFVLKELVRKSIGETQVELYKL 455 (467)
Q Consensus 423 ~~P~~~~~~~v~~~l~~~v~~~~~~~~~~~~~~ 455 (467)
++|+.+|++.|++++..++.++..+ .+.+||.
T Consensus 441 ~~Pa~~~v~~V~~~v~~~~~~~~~~-~f~rfp~ 472 (608)
T 3szr_A 441 EEPAVDMLHTVTDMVRLAFTDVSIK-NFEEFFN 472 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhH
Confidence 9999999999999999999887664 3455543
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=3.1e-52 Score=421.66 Aligned_cols=331 Identities=73% Similarity=1.175 Sum_probs=295.5
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeec
Q 012279 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (467)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~ 83 (467)
||+|++++|+||+++..+|..+. ...++.+..++|+|+|||++|||||||+|+|+|.+|+|++.++|||+|+++++.+.
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~ 79 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGD-SSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKI 79 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCS-SCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHHhhCcccc-ccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecC
Confidence 79999999999999999987653 45677778899999999999999999999999999999999999999999999998
Q ss_pred CCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHH
Q 012279 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~ 163 (467)
+....+++.|.+..+..+.+|+.++.++...+....|.+.+|+.+++.+++++|..++++||||||+.+....+|+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 80 DDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIV 159 (360)
T ss_dssp SSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHH
T ss_pred CCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEE
Q 012279 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (467)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~ 243 (467)
+.+..++..|++++|++|+++++++.+..+++++.+++.+++.+.|+|+|+||+|+++++....+.+.+...++++||++
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVG 239 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEE
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEE
Confidence 99999999999999999999999988888889999999999999999999999999988888888888888889999999
Q ss_pred EEeCChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 012279 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDH 323 (467)
Q Consensus 244 V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~ 323 (467)
|+++++.+++...+..++...|..||.++++|+.+..++|+..|+++|++.|.+||+++||.++.+|+..+.+++++|++
T Consensus 240 v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~ 319 (360)
T 3t34_A 240 VVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSR 319 (360)
T ss_dssp ECCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC---
T ss_pred EEECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHH
Q 012279 324 LGRPIAVDAGAQ 335 (467)
Q Consensus 324 lg~~~~~~~~~~ 335 (467)
||+++++++.++
T Consensus 320 lg~~~~~~~~~~ 331 (360)
T 3t34_A 320 LGKPIAHGTDSR 331 (360)
T ss_dssp ------------
T ss_pred cCCCCCCCHHHH
Confidence 999988766544
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=1.2e-48 Score=394.35 Aligned_cols=338 Identities=51% Similarity=0.816 Sum_probs=308.4
Q ss_pred hhhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEee
Q 012279 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (467)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~ 82 (467)
+|++|++++++|++.+..+|.... .++|+|+|||.+|+|||||+|+|+|.+++|++.++||++|+++++.+
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~---------~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~ 75 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGG---------CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEc
Confidence 589999999999999998886432 48999999999999999999999999999999999999999999987
Q ss_pred cCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccH
Q 012279 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (467)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~ 162 (467)
.+ .+|+.|.+.++..+++++.+..+++..++++.|.+.+++...+.+++++++..+++||||||+.+.+.++|+.++
T Consensus 76 ~~---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~ 152 (353)
T 2x2e_A 76 AT---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 152 (353)
T ss_dssp CS---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTH
T ss_pred CC---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhH
Confidence 64 467888888889999999999999999999988888999999999999999999999999999998888889998
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeE
Q 012279 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (467)
Q Consensus 163 ~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~ 242 (467)
.+.+.+++..|+.+++++||+|++++.++.+++.+.+++.+++.+.|+++|+||+|+++++.++.+++.+...++++||+
T Consensus 153 ~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 232 (353)
T 2x2e_A 153 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232 (353)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCce
Confidence 88999999999999999999999999999888888899999999999999999999998776666777777778889999
Q ss_pred EEEeCChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 012279 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (467)
Q Consensus 243 ~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~ 322 (467)
.|+++|+.+..+..++.+....|.+||.+++.|+....++|+..|++.|++.|..+++++||++..+++..+..++.+++
T Consensus 233 ~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~ 312 (353)
T 2x2e_A 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312 (353)
T ss_dssp ECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCChhHHH--HHHHHHHHHHHHHHHH
Q 012279 323 HLGRPIAVDAGAQL--YTILELCRAFDRIFKE 352 (467)
Q Consensus 323 ~lg~~~~~~~~~~~--~~l~~~~~~f~~~~~~ 352 (467)
+++..++.++.++. .++++++++|++.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 313 EYKNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99987766654444 7899999999999864
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=1e-40 Score=330.58 Aligned_cols=310 Identities=51% Similarity=0.812 Sum_probs=244.7
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecC
Q 012279 5 ESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTE 84 (467)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~ 84 (467)
|+|++++|+|++++..+|... .++|+|+|+|.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~----------~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~ 70 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSDP----------LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLP 70 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSCT----------TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECC
T ss_pred CchHHHHHHHHHHHHHcCCCC----------CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCC
Confidence 579999999999998887652 4899999999999999999999999999999999999999999998864
Q ss_pred C-----CCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCC
Q 012279 85 D-----GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (467)
Q Consensus 85 ~-----~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~ 159 (467)
. ...+|+.+.+.++..+.++.++.+++...++++.|.+.+++..++.+++++|...+++||||||+.+.+..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~ 150 (315)
T 1jwy_B 71 IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQP 150 (315)
T ss_dssp CCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC--------
T ss_pred CcccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCc
Confidence 3 34678888888888899999999999999998888888999999999999999999999999999876655667
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCC
Q 012279 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (467)
Q Consensus 160 ~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l 239 (467)
....+.+..++..|+..+|++|+++.+++.++...+.+.+++.+++.+.|+++|+||+|+.+......+.+.+....++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~ 230 (315)
T 1jwy_B 151 TDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTL 230 (315)
T ss_dssp -CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTT
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCC
Confidence 77778889999999999998888888777777666666788999988999999999999997766556666655556668
Q ss_pred CeEEEEeCChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012279 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (467)
Q Consensus 240 g~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~ 319 (467)
+|++|+++|+.+++.+....+....+..||..+++|..+..+.|+..|...+++.+..++++++|++...++..+.++++
T Consensus 231 ~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~ 310 (315)
T 1jwy_B 231 GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQG 310 (315)
T ss_dssp CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999887777777777778889988888888888999999999999999999999999999999999999999
Q ss_pred HHHHc
Q 012279 320 EMDHL 324 (467)
Q Consensus 320 ~l~~l 324 (467)
+|++|
T Consensus 311 ~l~~~ 315 (315)
T 1jwy_B 311 ELSTY 315 (315)
T ss_dssp -----
T ss_pred HHHhC
Confidence 99765
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=4.5e-39 Score=316.20 Aligned_cols=298 Identities=56% Similarity=0.901 Sum_probs=263.3
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeec
Q 012279 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (467)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~ 83 (467)
|++|++++++|++.+..++.... ..+|+|+|+|.+|+|||||+|+|+|.+++|++.++||++|+++++.+.
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~---------~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~ 71 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNS 71 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTT---------CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCC---------CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecC
Confidence 79999999999999988876432 478999999999999999999999999999999999999999999876
Q ss_pred CCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHH
Q 012279 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (467)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~ 163 (467)
+. +|..+.+..+..+++++.+...+...+.++.|.+.+++...+.+++++|+..+++||||||+.+....++++++.
T Consensus 72 ~~---~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~ 148 (299)
T 2aka_B 72 TT---EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE 148 (299)
T ss_dssp SS---CEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHH
T ss_pred Cc---ccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHH
Confidence 53 566677777888899999998888888888888889999999999999988999999999999877666777777
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEE
Q 012279 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (467)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~ 243 (467)
..+..++..|++.++++||+|++++.++..++.+.+++.+++.+.|+++|+||+|+.+.+....+.+.+....+..||+.
T Consensus 149 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2aka_B 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 228 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEE
Confidence 78899999999999999988999998888887778999999999999999999999987665566666555566679999
Q ss_pred EEeCChhhhccCccHHHHHHHHHhhhccCCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012279 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKS 313 (467)
Q Consensus 244 V~~~s~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~ 313 (467)
++++|+.+..+..++......|.+||+..+.|.....++|+..|.+.|++.+..++++++|++..+++.+
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 9999998877778888888889999999899999999999999999999999999999999999988865
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.82 E-value=3.2e-19 Score=193.85 Aligned_cols=176 Identities=19% Similarity=0.261 Sum_probs=113.0
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHH--
Q 012279 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEI-- 111 (467)
Q Consensus 34 ~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i-- 111 (467)
+....++|+|+|.+|+|||||+|+|+|.+++|++..+||++|+++.+......+..+ .+.......++..+...+
T Consensus 65 l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~---~~g~~~~~~~~~~i~~~~~i 141 (695)
T 2j69_A 65 LQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHF---NDGKSPQQLDFQNFKYKYTI 141 (695)
T ss_dssp HHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEE---SSSCCCCEEEHHHHHHHSCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEE---cCCCcccccChhhhhhhhcC
Confidence 345678999999999999999999999999999999999999998774322111111 000000111222221110
Q ss_pred -HHHHhhhcCCCCCcCCCcEEEEeecCCC---CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC
Q 012279 112 -QDETDRVTGKTKQISPIPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (467)
Q Consensus 112 -~~~~~~~~g~~~~~s~~~i~l~i~~~~~---~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a 187 (467)
..........+.........++++.|.. .+++||||||+..... ....+..|++++| ++|+|+++
T Consensus 142 ~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD-~vL~Vvda 210 (695)
T 2j69_A 142 DPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCH-AILFVMRA 210 (695)
T ss_dssp CHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSS-EEEEEEET
T ss_pred CHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCC-EEEEEEeC
Confidence 0011111222333445666677777754 5899999999876321 2567889999999 45566667
Q ss_pred CcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 188 NQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 188 ~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+......+...+.+.+...+.++++|+||+|+.+..
T Consensus 211 ~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 211 SQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp TSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred CCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 666544443334445666788999999999997543
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.74 E-value=5.6e-18 Score=166.94 Aligned_cols=210 Identities=17% Similarity=0.253 Sum_probs=124.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccc-cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....|+++|.+|+|||||+|+|+|..+...+..+ +|+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~---------------------------------------- 48 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMR---------------------------------------- 48 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC----------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeE----------------------------------------
Confidence 4567999999999999999999999873222211 22222
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
+..........+++||||||+.+... .....+.+...+..|+..+|+++++ ++++......+
T Consensus 49 --------------~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~V-vD~~~~~~~~~ 110 (308)
T 3iev_A 49 --------------VLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFM-IDATEGWRPRD 110 (308)
T ss_dssp --------------EEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEE-EETTTBSCHHH
T ss_pred --------------EEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEE-EeCCCCCCchh
Confidence 11112222256899999999987431 2345667788899999999965555 45554443333
Q ss_pred HHHH-HHHhCCCCCceEEEeccCcccCCCCcHHHHhcCccccc--CCCeEEEEeCChhhhccCccHHHHHHHHHhhhccC
Q 012279 196 AMKL-AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRL--QHPWVGIVNRSQADINRNIDMIVARRKEREYFATS 272 (467)
Q Consensus 196 ~l~l-~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l--~lg~~~V~~~s~~~~~~~~~~~~~~~~e~~~f~~~ 272 (467)
..+ ...+...+.++++|+||+|+.+........+......+ ...++.+++..+.+++...+.+.....+.+.+...
T Consensus 111 -~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~ 189 (308)
T 3iev_A 111 -EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPE 189 (308)
T ss_dssp -HHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred -HHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence 334 66666667899999999999843333322222111111 13455555555555544444444333332222222
Q ss_pred CCCCchhhccChHHHHHHHHHHHHHHHHhhhHHHHH
Q 012279 273 PDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITS 308 (467)
Q Consensus 273 ~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~ 308 (467)
....+.+.+ ....+.+++.+...+.+++|+..+
T Consensus 190 ~~~td~~~~---~~~~e~irek~~~~~~~eiP~~~~ 222 (308)
T 3iev_A 190 DMITDLPLR---LLAAEIVREKAMMLTREEVPTSIA 222 (308)
T ss_dssp TCCBCCCHH---HHHHHHHHHHHHHTCCTTHHHHCE
T ss_pred ccccCCCHH---HHHHHHHHHHHHhhhhhhcCCeeE
Confidence 222222222 245677888888889999998544
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.71 E-value=2.2e-17 Score=162.04 Aligned_cols=203 Identities=20% Similarity=0.218 Sum_probs=120.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..+.|++||.+|+|||||+|+|+|..+.+.+.. .+|+..+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i--------------------------------------- 46 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL--------------------------------------- 46 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEE---------------------------------------
Confidence 345799999999999999999999987332221 1222211
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
. .+......++.||||||+.+.. ..+.+.+...+..|++.+|+++++ ++++..+...
T Consensus 47 ---------------~-~i~~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~V-vD~~~~~~~~- 103 (301)
T 1wf3_A 47 ---------------R-GILTEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWV-VDLRHPPTPE- 103 (301)
T ss_dssp ---------------E-EEEEETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEE-EETTSCCCHH-
T ss_pred ---------------E-EEEEeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEE-EECCCCCChH-
Confidence 1 1222335689999999998631 234555778889999999965554 5555444333
Q ss_pred HHHHHHHhCCC--CCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCCh---hhhccCccHHHHHHHHHhhhc
Q 012279 196 AMKLAREVDPT--GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ---ADINRNIDMIVARRKEREYFA 270 (467)
Q Consensus 196 ~l~l~~~~d~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~---~~~~~~~~~~~~~~~e~~~f~ 270 (467)
...+...+... +.|+++|+||+|+.+......+.+. .+ .++..+...|+ .+++...+.+.....+.++++
T Consensus 104 ~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~--~~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y 178 (301)
T 1wf3_A 104 DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYH--EL---LPEAEPRMLSALDERQVAELKADLLALMPEGPFFY 178 (301)
T ss_dssp HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHH--HT---STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSS
T ss_pred HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHH--Hh---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCC
Confidence 23344445443 7899999999999864321222222 11 34434555555 444444433332222223332
Q ss_pred cCCCC-CchhhccChHHHHHHHHHHHHHHHHhhhHHHHHH
Q 012279 271 TSPDY-GHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSL 309 (467)
Q Consensus 271 ~~~~~-~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~~~~ 309 (467)
....+ .+.+.++ ...+.+++.+...+.+++|+....
T Consensus 179 ~~~~~~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~~v 215 (301)
T 1wf3_A 179 PEDYAKSDQTFGE---WVAEILREEAMKRLWHEVPYAVAT 215 (301)
T ss_dssp CTTCCSBSSCHHH---HHHHHHHHHHHHTCCTTHHHHCEE
T ss_pred CcccccCCCCHHH---HHHHHHHHHHHHHhhcccCceEEE
Confidence 22223 3333333 356778888889999999986543
No 10
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.59 E-value=1.3e-15 Score=146.06 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=80.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.|+|+++|++|+|||||+|+|+|..+ ..+. ..+|....
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~---------------------------------------- 39 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKK---------------------------------------- 39 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEE----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEE----------------------------------------
Confidence 37899999999999999999999874 2211 11111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~V~~a~~d~~~~ 194 (467)
.-.+.. +...+.||||||+.+....++..... +.+++.|+ .++|++|+++ +++. ..
T Consensus 40 --------------~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~vi~Vv-Das~---~~ 97 (256)
T 3iby_A 40 --------------TGEFLL-GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCIINVI-DACH---LE 97 (256)
T ss_dssp --------------EEEEEE-TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEEEEEE-EGGG---HH
T ss_pred --------------EEEEEE-CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEEEEEe-eCCC---ch
Confidence 001111 23478999999998754321111222 34578888 8889665555 4443 34
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+.+..++...+.|+++|+||+|+.+..
T Consensus 98 ~~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 98 RHLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred hHHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 56778888888899999999999987543
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.59 E-value=2.7e-16 Score=154.33 Aligned_cols=202 Identities=15% Similarity=0.190 Sum_probs=111.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccc-cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..+.|+++|.+|+|||||+|+|+|..+.+.+..+ +|+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~--------------------------------------- 47 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI--------------------------------------- 47 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCE---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeE---------------------------------------
Confidence 4468999999999999999999998763222111 222110
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCC-ccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~-~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
. .+...+..+++++||||+. ... ....+.+...+..+++.+|.++ +|+++.. +...
T Consensus 48 ---------------~-gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~vl-~Vvd~~~-~~~~ 104 (301)
T 1ega_A 48 ---------------V-GIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVELVI-FVVEGTR-WTPD 104 (301)
T ss_dssp ---------------E-EEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEEEE-EEEETTC-CCHH
T ss_pred ---------------E-EEEEECCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCEEE-EEEeCCC-CCHH
Confidence 0 1222234589999999987 311 0111223333566778888544 4455544 5444
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhh---ccCccHHHHHHHHHhhhcc
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADI---NRNIDMIVARRKEREYFAT 271 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~---~~~~~~~~~~~~e~~~f~~ 271 (467)
+ ..+++.+...+.|.++|+||+|+........+.+. .+...+|+..++..|+... +...+.+.....+.++++.
T Consensus 105 ~-~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~--~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 105 D-EMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ--FLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp H-HHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHH--HHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSC
T ss_pred H-HHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHH--HHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCC
Confidence 3 34666666668999999999999863222223322 1222345544556665443 3222222221112222222
Q ss_pred CCCCCchhhccChHHHHHHHHHHHHHHHHhhhHHH
Q 012279 272 SPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSI 306 (467)
Q Consensus 272 ~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~~ 306 (467)
.....+.+.++ ...+.+++.+.+.+.+++|+.
T Consensus 182 ~~~~~d~~~~~---~~~e~~re~l~~~l~~e~p~~ 213 (301)
T 1ega_A 182 EDYITDRSQRF---MASEIIREKLMRFLGAELPYS 213 (301)
T ss_dssp TTCCSCCSHHH---HHHHHHHHHHHHHHGGGCCTT
T ss_pred ccccCCCCHHH---HHHHHHHHHHHHHhCCCCCeE
Confidence 22233333332 355667788888888888764
No 12
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.55 E-value=1.1e-14 Score=135.77 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=86.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCC-ccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~l-P~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
...|+|+|+|.+|+|||||+|+|+|..++ ..+.. .+|+.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 68 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI-------------------------------------- 68 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--------------------------------------
Confidence 35789999999999999999999998732 11111 112211
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCe--EEEEEecCCccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNS--VILAISPANQDI 191 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~--iIL~V~~a~~d~ 191 (467)
....+.......++||||||+..... +....+.+..++..|+...+. ++++|+++...+
T Consensus 69 ----------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~ 129 (223)
T 4dhe_A 69 ----------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL 129 (223)
T ss_dssp ----------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC
T ss_pred ----------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC
Confidence 11122223457899999999876432 334456677888888876432 455566666544
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 192 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
......+.+.+...+.++++|+||+|+.+..
T Consensus 130 -~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 130 -TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp -CHHHHHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred -CHHHHHHHHHHHhcCCCEEEEEeccccCChh
Confidence 3344456666666788999999999998643
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.52 E-value=3.4e-14 Score=128.87 Aligned_cols=126 Identities=20% Similarity=0.203 Sum_probs=79.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccc-cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
...|+|+|+|.+|+|||||+|+|+|..+-+.+..+ +|+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~--------------------------------------- 61 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI--------------------------------------- 61 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE---------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe---------------------------------------
Confidence 35689999999999999999999998742222111 11111
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCC--eEEEEEecCCcccc
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN--SVILAISPANQDIA 192 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~--~iIL~V~~a~~d~~ 192 (467)
. .. ....++.++||||+..... +....+....+...|++..+ .++++|+++....
T Consensus 62 ----------------~--~~-~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~- 118 (195)
T 3pqc_A 62 ----------------N--FY-LVNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP- 118 (195)
T ss_dssp ----------------E--EE-EETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-
T ss_pred ----------------E--EE-EECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC-
Confidence 0 11 1124788999999765321 22334556777888887662 2455556665443
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 193 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
......+.+.+...+.|+++|+||+|+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 119 QDSDLMMVEWMKSLNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred CHHHHHHHHHHHHcCCCEEEEEEChhcCChH
Confidence 2333344555555578999999999998654
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.51 E-value=5.7e-14 Score=127.73 Aligned_cols=126 Identities=25% Similarity=0.384 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|.+|+|||||+|+|+|..+.+..... |
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK----P----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC----C-----------------------------------------
Confidence 5789999999999999999999998753211100 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCC---CeEEEEEecCCccccc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDIAT 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~---~~iIL~V~~a~~d~~~ 193 (467)
| .+.......+ ..++.+|||||+..... +....+.+..+...|++.. ++ +++|.+++... .
T Consensus 57 ---~----~t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~d~~~~~-~ 120 (195)
T 1svi_A 57 ---G----KTQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKA-VVQIVDLRHAP-S 120 (195)
T ss_dssp ----------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEE-EEEEEETTSCC-C
T ss_pred ---C----ceeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCE-EEEEEECCCCC-C
Confidence 0 0000011111 23799999999765321 3333556777888888776 64 55555555544 3
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.....+.+.+...+.++++|+||+|+.+..
T Consensus 121 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 121 NDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 333444555554678999999999998754
No 15
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.50 E-value=1.5e-14 Score=139.91 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=77.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.++|+++|++|+|||||+|+|+|..+ +.+.- .+|..+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~---------------------------------------- 41 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERK---------------------------------------- 41 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEE----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEE----------------------------------------
Confidence 46899999999999999999999874 32221 1121111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~V~~a~~d~~~~ 194 (467)
.-.+.. ....+.||||||+.+...........+ .+++.|+ .++|.+|+++. ++. ..
T Consensus 42 --------------~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e---~i~~~~~~~~~~d~ii~VvD-~~~---~~ 99 (274)
T 3i8s_A 42 --------------EGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDADLLINVVD-ASN---LE 99 (274)
T ss_dssp --------------EEEEEC-SSCEEEEEECCCCSCSCC----CCHHH---HHHHHHHHHTCCSEEEEEEE-GGG---HH
T ss_pred --------------EEEEEe-CCCceEEEECcCCCccccccccCCHHH---HHHHHHHhhcCCCEEEEEec-CCC---hH
Confidence 111221 235789999999987543221223333 3466675 68886655554 443 23
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+.+..++...+.|+++|+||+|+.+..
T Consensus 100 ~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 100 RNLYLTLQLLELGIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECHHHHHHT
T ss_pred HHHHHHHHHHhcCCCEEEEEECccchhhh
Confidence 44555566555689999999999987543
No 16
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.50 E-value=2.3e-14 Score=137.26 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccc--cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
..++|+|+|.+|||||||+|+|+|...++.+..+ +|+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~------------------------------------- 63 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSK------------------------------------- 63 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEE-------------------------------------
Confidence 4568999999999999999999998865544332 3332210
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.....+..++.||||||+.+... ......+.+...+..+++.+|++|+++. +.. +...
T Consensus 64 ------------------~~~~~~~~~i~iiDTpG~~~~~~--~~~~~~~~i~~~~~~~~~~~d~il~V~d-~~~-~~~~ 121 (260)
T 2xtp_A 64 ------------------SQGSWGNREIVIIDTPDMFSWKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQ-LGR-YTSQ 121 (260)
T ss_dssp ------------------EEEEETTEEEEEEECCGGGGSSC--CCHHHHHHHHHHHHHHTTCCSEEEEEEE-TTC-CCHH
T ss_pred ------------------EEEEeCCCEEEEEECcCCCCCCC--CHHHHHHHHHHHHHhcCCCCcEEEEEEe-CCC-CCHH
Confidence 01112335799999999987432 1222333445666778899996666554 443 3222
Q ss_pred H--HHHHHHHhCCC--CCceEEEec-cCcccC
Q 012279 195 D--AMKLAREVDPT--GERTFGVLT-KLDLMD 221 (467)
Q Consensus 195 ~--~l~l~~~~d~~--~~rti~Vlt-K~D~~~ 221 (467)
+ .+..+..+... +.+.++|+| |+|+.+
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 2 23334443221 467888888 999984
No 17
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.50 E-value=7.3e-14 Score=127.02 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=92.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 54 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 54 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE----------------------------------------
Confidence 4568999999999999999999998763322222111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~--~~~ 194 (467)
...+.+ ......+.|+||||... ...+...|++.+|++|+++...+... ...
T Consensus 55 ------------~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 55 ------------IRTIEL-DGKTIKLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHh-------------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHH
Confidence 000111 11124789999999654 23457788999997666655433210 012
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
..+..+......+.++++|+||+|+.+................+..|+.+.+..+.+++..+..+.
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 233445555566789999999999986543221111111222345677777666665554444433
No 18
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=9.7e-14 Score=122.16 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=87.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+|+|++|+|||||+|+|++..+.+... +.+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~------------------------------------------ 40 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD-PTIEDFY------------------------------------------ 40 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC-CCcceeE------------------------------------------
Confidence 479999999999999999999877532211 1111000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH--
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA-- 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~-- 196 (467)
...+.+ ......+.|+||||... ...+...|++.++++++++...+.. .-...
T Consensus 41 ----------~~~~~~-~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 95 (167)
T 1kao_A 41 ----------RKEIEV-DSSPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVNQQ-SFQDIKP 95 (167)
T ss_dssp ----------EEEEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHH-HHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCCHH-HHHHHHH
Confidence 000111 11224589999999654 2556778899999776666544321 11111
Q ss_pred -H-HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 197 -M-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 197 -l-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
+ .+.+.....+.|+++|+||+|+.+................+..++.+++..+.+++.....+
T Consensus 96 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 96 MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 1 23333444578999999999987543321111110111223467777777666655444433
No 19
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.48 E-value=7e-14 Score=134.08 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=90.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..++|+++|++|+|||||+|+|+|..+. .+. ..+|...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~---------------------------------------- 42 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEK---------------------------------------- 42 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEE----------------------------------------
Confidence 3468999999999999999999998752 111 1111111
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCccccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIAT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~V~~a~~d~~~ 193 (467)
....+.. ....+.||||||..+.. +.... +.+++.|+ ..+|++|++ ++++. .
T Consensus 43 --------------~~~~~~~-~~~~~~l~DtpG~~~~~----~~~~~---e~v~~~~~~~~~~d~ii~V-~D~t~---~ 96 (258)
T 3a1s_A 43 --------------KEGVFTY-KGYTINLIDLPGTYSLG----YSSID---EKIARDYLLKGDADLVILV-ADSVN---P 96 (258)
T ss_dssp --------------EEEEEEE-TTEEEEEEECCCCSSCC----SSSHH---HHHHHHHHHHSCCSEEEEE-EETTS---C
T ss_pred --------------EEEEEEE-CCeEEEEEECCCcCccC----CCCHH---HHHHHHHHhhcCCCEEEEE-eCCCc---h
Confidence 0111111 23588999999998753 22222 34567776 477855554 45543 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCCCc---HHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTN---ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
...+.+..++...+.|+++|+||+|+.+.... ...+ ...++..++.+++..+.+++..+..+
T Consensus 97 ~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 97 EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYEL----QKHLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHH----HHHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHH----HHHcCCCEEEEEeeCCcCHHHHHHHH
Confidence 34566777777778999999999998753321 1122 11223455555555555554444433
No 20
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.48 E-value=1.3e-13 Score=129.41 Aligned_cols=135 Identities=15% Similarity=0.251 Sum_probs=77.4
Q ss_pred CcccccccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHH
Q 012279 29 NAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVR 108 (467)
Q Consensus 29 ~~l~~~~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 108 (467)
..+|.+....++|+|+|.+|+|||||+|+|+|..+.+.....+|+..
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~--------------------------------- 66 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL--------------------------------- 66 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE---------------------------------
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee---------------------------------
Confidence 34555556778999999999999999999999875221111112111
Q ss_pred HHHHHHHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 012279 109 KEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN 188 (467)
Q Consensus 109 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~ 188 (467)
.+.........+.||||||....... .....+ ......|...+|++|+++ +++
T Consensus 67 ----------------------~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~--~~~~~~~~~~~d~~i~v~-d~~ 119 (228)
T 2qu8_A 67 ----------------------YVGHFDHKLNKYQIIDTPGLLDRAFE--NRNTIE--MTTITALAHINGVILFII-DIS 119 (228)
T ss_dssp ----------------------EEEEEEETTEEEEEEECTTTTTSCGG--GCCHHH--HHHHHHHHTSSEEEEEEE-ETT
T ss_pred ----------------------eeeeeecCCCeEEEEECCCCcCcccc--hhhhHH--HHHHHHhhccccEEEEEE-ecc
Confidence 11111112357899999999653211 111100 122345567777655554 444
Q ss_pred cc--cccHHHHHHHHHhCCC--CCceEEEeccCcccCCC
Q 012279 189 QD--IATSDAMKLAREVDPT--GERTFGVLTKLDLMDKG 223 (467)
Q Consensus 189 ~d--~~~~~~l~l~~~~d~~--~~rti~VltK~D~~~~~ 223 (467)
.. +.......+...+... +.++++|+||+|+.+..
T Consensus 120 ~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 120 EQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp CTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred cccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 32 2223344566666554 78999999999998654
No 21
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.48 E-value=1.2e-13 Score=133.53 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=80.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|||.+|+|||||+|+|+|.+.++.+...++...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------ 45 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------ 45 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC------------------------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc------------------------------------------
Confidence 35799999999999999999999887654432111100
Q ss_pred hcCCCCCcCCCcEEEEeecC-CCCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcC-------------CCeEEE
Q 012279 118 VTGKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVIL 182 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~-~~~~ltlVDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~-------------~~~iIL 182 (467)
. ..+........+... ....++||||||+...... ..-..+.+.+.+....|+.. .|++++
T Consensus 46 --~--~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~ 121 (274)
T 3t5d_A 46 --K--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLY 121 (274)
T ss_dssp -------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEE
T ss_pred --C--CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEE
Confidence 0 001111111122211 1237999999999653221 11222333344444666654 567777
Q ss_pred EEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 183 ~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
++.++...+ ......+++.+.. +.++|+|+||+|+....
T Consensus 122 ~i~~~~~~~-~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 122 FIAPSGHGL-KPLDIEFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp EECSCCSSC-CHHHHHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred EecCCCCCC-CHHHHHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 777776555 3444567788877 89999999999998543
No 22
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=7.7e-14 Score=127.94 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+ +...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~------------------------------------- 46 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFK------------------------------------- 46 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS---EEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---eeEE-------------------------------------
Confidence 456899999999999999999999876332111110 0000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
...+.+ ......+.|+||||... ...+...|++++|++|+++. ++....-..
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~ 99 (203)
T 1zbd_A 47 ------------VKTIYR-NDKRIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYD-ITNEESFNAV 99 (203)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEE-TTCHHHHHHH
T ss_pred ------------EEEEEE-CCeEEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEE-CcCHHHHHHH
Confidence 000111 12235789999999754 35678889999997666654 433211111
Q ss_pred --HHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 --AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 --~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+..+......+.++++|+||+|+.+..
T Consensus 100 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 100 QDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred HHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 2223334444578999999999997643
No 23
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.47 E-value=9.5e-14 Score=121.87 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=84.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.|+|+|+|++|+|||||+|+|++..+...+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 47899999999999999999998874211111 111111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
....+.. +...+.++||||..... +....+......+++.+|++|+++. ++......+
T Consensus 40 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~d-~~~~~~~~~- 97 (161)
T 2dyk_A 40 -------------KEGVVET-DRGRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVLFAVD-GRAELTQAD- 97 (161)
T ss_dssp -------------EEEEEEE-TTEEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEEEEEE-SSSCCCHHH-
T ss_pred -------------eEEEEEe-CCceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEEEEEE-CCCcccHhH-
Confidence 1111111 22478999999987632 1224456778889999997666554 444332222
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCC-CeEEEEeCChhhhc
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADIN 253 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l-g~~~V~~~s~~~~~ 253 (467)
..+.+.+...+.++++|+||+|+.+......++. .++. .|+.+++..+.+++
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 98 YEVAEYLRRKGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHH
T ss_pred HHHHHHHHhcCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChH
Confidence 2233333334688999999999986532222221 2223 45556555554443
No 24
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.47 E-value=1e-13 Score=125.43 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=45.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH---HHHhCC-CCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL---AREVDP-TGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l---~~~~d~-~~~rti~Vlt 215 (467)
..+.|+||||... ...+...|++++|++|+++. ++..........+ +..... .+.++++|+|
T Consensus 70 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLER-------------FRSLTTAFFRDAMGFLLLFD-LTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHHTTTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4789999999754 36678899999997666654 4332212221222 222222 5789999999
Q ss_pred cCcccCC
Q 012279 216 KLDLMDK 222 (467)
Q Consensus 216 K~D~~~~ 222 (467)
|+|+.+.
T Consensus 136 K~Dl~~~ 142 (195)
T 3bc1_A 136 KSDLEDQ 142 (195)
T ss_dssp CTTCGGG
T ss_pred Ccccccc
Confidence 9999754
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.47 E-value=4.9e-14 Score=124.89 Aligned_cols=119 Identities=21% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+.+......+....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 44 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL---------------------------------------- 44 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE----------------------------------------
Confidence 3468999999999999999999988753221111111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
...+.+ ......+.++||||... ...+...|++++|++|+++...+.+ .-...
T Consensus 45 ------------~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 97 (170)
T 1z08_A 45 ------------TKKLNI-GGKRVNLAIWDTAGQER-------------FHALGPIYYRDSNGAILVYDITDED-SFQKV 97 (170)
T ss_dssp ------------EEEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHH-HHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHh-------------hhhhHHHHhccCCEEEEEEECcCHH-HHHHH
Confidence 000111 11224788999999643 2445667888999766665443321 11111
Q ss_pred ---HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 ---MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 ---l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+..++...+.+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 98 KNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 22233333346899999999999764
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=128.44 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=70.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...++|+|+|.+|+|||||+|+|++..+.+......|....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 47 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFK--------------------------------------- 47 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEE---------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEE---------------------------------------
Confidence 35689999999999999999999998763222111111110
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
...+.+ ......+.|+||||.... ..+...|++.+|++|+++. ++.......
T Consensus 48 -------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~ 99 (181)
T 3tw8_B 48 -------------IRTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYD-VTSAESFVN 99 (181)
T ss_dssp -------------EEEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEE-TTCHHHHHH
T ss_pred -------------EEEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEE-CCCHHHHHH
Confidence 000111 111247899999996542 2335667889996666554 433221222
Q ss_pred HHHHHHHhC--CCCCceEEEeccCcccCCC
Q 012279 196 AMKLAREVD--PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~l~~~~d--~~~~rti~VltK~D~~~~~ 223 (467)
...+...+. ..+.++++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 100 VKRWLHEINQNCDDVCRILVGNKNDDPERK 129 (181)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEECTTCGGGC
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCCCchhc
Confidence 222222221 2358999999999987543
No 27
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.47 E-value=1e-13 Score=126.34 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC-CCCceEEEeccCc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP-TGERTFGVLTKLD 218 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~-~~~rti~VltK~D 218 (467)
..+.||||||.... ..+...|++.+|++|+++ +++..........+...+.. .+.++++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVF-DISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 57899999996442 345778899999665555 44433222222223333221 2489999999999
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.47 E-value=5.3e-14 Score=124.52 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|++|+|||||+|+|++..+.+......+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK----------------------------------------- 41 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE-----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE-----------------------------------------
Confidence 358999999999999999999998763322111111100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---H
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---S 194 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~---~ 194 (467)
...+.+ ......+.|+||||.... ..+...|++++|++|+++. ++....- .
T Consensus 42 -----------~~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 95 (170)
T 1g16_A 42 -----------IKTVDI-NGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYD-ITDERTFTNIK 95 (170)
T ss_dssp -----------EEEEES-SSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEE-TTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEE-CCCHHHHHHHH
Confidence 000111 112246899999996542 2336678889996666554 4332111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
..+..+......+.++++|+||+|+.+
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 233344444555789999999999943
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=1.1e-13 Score=124.01 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=71.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|.+|+|||||+|+|++..+.+....+.+.....
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~-------------------------------------- 49 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR-------------------------------------- 49 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE--------------------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE--------------------------------------
Confidence 345689999999999999999999987643222211111100
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-c
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-T 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~ 193 (467)
...+.+ ......+.++||||... ...+...|++++|++|+++...+.. +. .
T Consensus 50 -------------~~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 102 (180)
T 2g6b_A 50 -------------NKVLDV-DGVKVKLQMWDTAGQER-------------FRSVTHAYYRDAHALLLLYDVTNKASFDNI 102 (180)
T ss_dssp -------------EEEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHccCCCEEEEEEECCCHHHHHHH
Confidence 000011 11124789999999643 3556788899999766665443321 10 1
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...+..+....+.+.++++|+||+|+.+..
T Consensus 103 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 103 QAWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred HHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 122344455555678999999999998643
No 30
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.46 E-value=5.3e-14 Score=145.22 Aligned_cols=160 Identities=17% Similarity=0.267 Sum_probs=91.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCc-ccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLP-RGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP-~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+|.|++||.+|+|||||+|+|+|..+-- .....+||-.
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~----------------------------------------- 39 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP----------------------------------------- 39 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccce-----------------------------------------
Confidence 4899999999999999999999987411 1111122211
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+.-.+. .+...+.||||||+.... +....+.+...+..|++++|.+|++ +++...+...+
T Consensus 40 -------------~~~~~~-~~~~~~~l~DT~G~~~~~----~~~~~~~~~~~~~~~~~~ad~il~V-~D~~~~~~~~d- 99 (439)
T 1mky_A 40 -------------VQDTVE-WYGKTFKLVDTCGVFDNP----QDIISQKMKEVTLNMIREADLVLFV-VDGKRGITKED- 99 (439)
T ss_dssp -------------SEEEEE-ETTEEEEEEECTTTTSSG----GGCCCHHHHHHHHHHHTTCSEEEEE-EETTTCCCHHH-
T ss_pred -------------eeEEEE-ECCeEEEEEECCCccccc----cchHHHHHHHHHHHHHHhCCEEEEE-EECCCCCCHHH-
Confidence 010111 123468999999987532 1223355778899999999965554 56655443332
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC-CCcH-HHHhcCcccccCC-CeEEEEeCChhhhccCccHHHHHH
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK-GTNA-LDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVARR 263 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~-~~~~-~~~l~~~~~~l~l-g~~~V~~~s~~~~~~~~~~~~~~~ 263 (467)
..++..+...+.++++|+||+|+.+. .... .+. +.++. .++.+++..+.++++..+.+....
T Consensus 100 ~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 100 ESLADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp HHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 23444444457899999999998642 1111 121 23333 356666666666655555544433
No 31
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.46 E-value=9.2e-14 Score=131.41 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccccc--ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
..++|+++|.+|+|||||+|+|+|..+.+.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 567899999999999999999999987544432 3333332111
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
+ ..+...++||||||+...... .....+.+......+.+.++++|+++ +++. +...
T Consensus 73 -------------------~-~~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~-d~~~-~~~~ 128 (239)
T 3lxx_A 73 -------------------S-SWKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVV-PLGR-YTEE 128 (239)
T ss_dssp -------------------E-EETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEE-ETTC-CSSH
T ss_pred -------------------E-EeCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEe-eCCC-CCHH
Confidence 1 112357899999999875432 23344556666667777888655554 4442 2222
Q ss_pred --HHHHHHHH-hC-CCCCceEEEeccCcccCCC
Q 012279 195 --DAMKLARE-VD-PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 --~~l~l~~~-~d-~~~~rti~VltK~D~~~~~ 223 (467)
..+..... +. ....++++|+||+|+.+..
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 129 EHKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 22222221 11 1235899999999998653
No 32
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.46 E-value=8.1e-14 Score=123.09 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=57.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+++|++|+|||||+|+|+|..+-+....+.+.+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR----------------------------------------- 40 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-----------------------------------------
Confidence 458999999999999999999987652222111111110
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
.+ ........+.++||||... ...+...|++.++++++++...+.. .-....
T Consensus 41 -------------~~-~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 92 (166)
T 3q72_A 41 -------------SI-VVDGEEASLMVYDIWEQDG-------------GRWLPGHCMAMGDAYVIVYSVTDKG-SFEKAS 92 (166)
T ss_dssp -------------EE-EETTEEEEEEEEECC----------------------------CCEEEEEEETTCHH-HHHHHH
T ss_pred -------------EE-EECCEEEEEEEEECCCCcc-------------chhhhhhhhhhCCEEEEEEECCCHH-HHHHHH
Confidence 00 1112234788999999654 3556778889999777666544321 112222
Q ss_pred HHHHHh----CCCCCceEEEeccCcccCCC
Q 012279 198 KLAREV----DPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 198 ~l~~~~----d~~~~rti~VltK~D~~~~~ 223 (467)
.+...+ ...+.|+++|+||+|+.+..
T Consensus 93 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 93 ELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp HHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred HHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 222222 23468999999999998654
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.46 E-value=1.2e-13 Score=121.73 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 43 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK--------------------------------------- 43 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEE---------------------------------------
Confidence 45899999999999999999998875 32222222111100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH-
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA- 196 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~- 196 (467)
.+. .......+.|+||||... ...+...|++.+|++|+++...+.+ .....
T Consensus 44 -------------~~~-~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 95 (168)
T 1u8z_A 44 -------------KVV-LDGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEME-SFAATA 95 (168)
T ss_dssp -------------EEE-ETTEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCHH-HHHHHH
T ss_pred -------------EEE-ECCEEEEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCHH-HHHHHH
Confidence 001 111224788999999644 2567788899999776666543321 11111
Q ss_pred --H-HHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 --M-KLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 --l-~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+ .+.......+.|+++|+||+|+.+..
T Consensus 96 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 96 DFREQILRVKEDENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred HHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence 1 23333444578999999999997643
No 34
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=126.00 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+ .. ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~--~~------------------------------------- 63 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-VE--FS------------------------------------- 63 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS-EE--EE-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc-ee--EE-------------------------------------
Confidence 456899999999999999999999876322211110 00 00
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
...+. .......+.|+||||.... ..+...|++++|++|+++. ++....-..
T Consensus 64 ------------~~~~~-~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D-~~~~~s~~~~ 116 (193)
T 2oil_A 64 ------------TRTVM-LGTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFD-LTKHQTYAVV 116 (193)
T ss_dssp ------------EEEEE-ETTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEE-TTCHHHHHTH
T ss_pred ------------EEEEE-ECCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEE-CCCHHHHHHH
Confidence 00011 1122357899999998652 3446788999997666654 433211111
Q ss_pred --HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 --AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 --~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..+......+.++++|+||+|+.+.
T Consensus 117 ~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 117 ERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 222233333457899999999999764
No 35
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.46 E-value=2.2e-14 Score=138.44 Aligned_cols=151 Identities=20% Similarity=0.272 Sum_probs=88.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccc-cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
.++|+++|++|+|||||+|+|+|..+ +.+.-+ +|....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~---------------------------------------- 41 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKK---------------------------------------- 41 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEE----------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEee----------------------------------------
Confidence 56899999999999999999999875 333211 111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~V~~a~~d~~~~ 194 (467)
...+. .....+.||||||+.+... .... ..++..|+ .++|.+|+++ +++.. .
T Consensus 42 --------------~~~~~-~~~~~~~l~DtpG~~~~~~----~~~~---~~~~~~~~~~~~~d~vi~v~-D~~~~---~ 95 (271)
T 3k53_A 42 --------------EGIME-YREKEFLVVDLPGIYSLTA----HSID---ELIARNFILDGNADVIVDIV-DSTCL---M 95 (271)
T ss_dssp --------------EEEEE-ETTEEEEEEECCCCSCCCS----SCHH---HHHHHHHHHTTCCSEEEEEE-EGGGH---H
T ss_pred --------------EEEEE-ECCceEEEEeCCCcccccc----CCHH---HHHHHHhhhccCCcEEEEEe-cCCcc---h
Confidence 00111 1234689999999987432 2222 23577776 6788655554 44432 3
Q ss_pred HHHHHHHHhCCCC-CceEEEeccCcccCCCC---cHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 195 DAMKLAREVDPTG-ERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 195 ~~l~l~~~~d~~~-~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
..+.+..++...+ .|+++|+||+|+.+... +...+ ...++..+++++.+.+.+++.....+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~~~~Sa~~g~gi~~l~~~i 160 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM----RKELGVPVIPTNAKKGEGVEELKRMI 160 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH----HHHHSSCEEECBGGGTBTHHHHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH----HHHcCCcEEEEEeCCCCCHHHHHHHH
Confidence 4555555555556 99999999999864322 11111 12234455555555554444444333
No 36
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=1e-13 Score=127.95 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|++++|||||+|+|++..+.+.....++....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 58 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK---------------------------------------- 58 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE----------------------------------------
Confidence 5679999999999999999999988763322211111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-H
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~ 194 (467)
...+.+ ......+.|+||||.... ..+...|++.+|++|+++...+.. +.. .
T Consensus 59 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 59 ------------IKTVDI-NGKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIK 112 (213)
T ss_dssp ------------EEEEEE-TTEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 001111 111247899999996542 334677889999766665543321 111 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~ 263 (467)
..+..+....+.+.++++|+||+|+.+......+. .......+..|+.+.+....+++..+..+....
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHH-HHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23334444555578999999999994332211111 101111234566666666655555544444333
No 37
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.46 E-value=2.5e-13 Score=143.60 Aligned_cols=168 Identities=17% Similarity=0.243 Sum_probs=96.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCC--cccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFL--PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~l--P~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (467)
...|.|+|+|.+|+|||||+|+|+|..+. +.+..++|.+.+.+......... .+... +.+ ...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~---------~g~~l-----~~~-~~~ 127 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTV---------PGNAL-----VVD-PEK 127 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEE---------CCC--------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccccc---------CCcee-----eec-Ccc
Confidence 46799999999999999999999999864 56666777555444332110000 00000 000 000
Q ss_pred HHhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHH--HHHHHHHhhcCCCeEEEEEecCCccc
Q 012279 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED--IESMVRSYVEKPNSVILAISPANQDI 191 (467)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~--i~~~~~~yi~~~~~iIL~V~~a~~d~ 191 (467)
....+...+..+....+++.+.++...+++||||||+.+... ..+... +..++..|+..+|++|+++...+.+.
T Consensus 128 ~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~ 203 (550)
T 2qpt_A 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI 203 (550)
T ss_dssp ----------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC
T ss_pred cHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC
Confidence 000011112334455555554443335899999999986321 111111 45678889999996665554433233
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 192 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
......+++.+...+.++++|+||+|+.+..
T Consensus 204 -~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 204 -SDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -CHHHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred -CHHHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 3444557777777788999999999998643
No 38
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.46 E-value=1.4e-13 Score=124.00 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+.+......+....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 48 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFG---------------------------------------- 48 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE----------------------------------------
Confidence 4578999999999999999999988763322211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-- 194 (467)
...+.+ ......+.|+||||... ...+...|++++|++|+++...+. ....
T Consensus 49 ------------~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 101 (186)
T 2bme_A 49 ------------SKIINV-GGKYVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSR-ETYNAL 101 (186)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTCH-HHHHTH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcCH-HHHHHH
Confidence 000111 11124789999999654 356788899999976666554332 1111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+..+......+.++++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 102 TNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 1223334455567899999999999753
No 39
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.46 E-value=2.1e-13 Score=122.64 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+++|||||+|+|++..+ +.....++......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 57 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 57 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEE--------------------------------------
Confidence 456899999999999999999998875 22222222111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.+.+ ......+.|+||||... ...+...|++.+|++|+++...+.+ .....
T Consensus 58 --------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 108 (187)
T 2a9k_A 58 --------------KVVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEME-SFAAT 108 (187)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHH-HHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCHH-HHHHH
Confidence 0011 11224788999999654 2566788899999766665543321 11111
Q ss_pred ---H-HHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 ---M-KLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 ---l-~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+ .+.+.....+.++++|+||+|+.+.
T Consensus 109 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 109 ADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1 2333344457899999999999764
No 40
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.46 E-value=1.1e-13 Score=122.44 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|.+|+|||||+|+|++..+.+........ . .
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~--~--------------------------------------- 43 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA-S--F--------------------------------------- 43 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSE-E--E---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeE-E--E---------------------------------------
Confidence 458999999999999999999998753221111000 0 0
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-- 195 (467)
....+.+ ......+.++||||... ...+...|++++|++|+++. ++.......
T Consensus 44 ----------~~~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~ 98 (170)
T 1z0j_A 44 ----------MTKTVQY-QNELHKFLIWDTAGLER-------------FRALAPMYYRGSAAAIIVYD-ITKEETFSTLK 98 (170)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEE-TTCHHHHHHHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEcCCCchh-------------hhcccHhhCcCCCEEEEEEE-CcCHHHHHHHH
Confidence 0000111 11235789999999854 24456788999997666654 433221122
Q ss_pred -HHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 -AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 -~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+..+........++++|+||+|+.+..
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 99 NWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp HHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred HHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 2233444445578899999999998643
No 41
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=124.67 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~----------------------------------------- 63 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF----------------------------------------- 63 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE-----------------------------------------
Confidence 456899999999999999999999875221111111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--- 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~--- 193 (467)
....+.+ ......+.|+||||... ...+...|++++|++|+++. ++.....
T Consensus 64 -----------~~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D-~~~~~s~~~~ 117 (192)
T 2il1_A 64 -----------KIKTVEL-RGKKIRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYD-ITKKETFDDL 117 (192)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEE-TTCHHHHHTH
T ss_pred -----------EEEEEEE-CCeEEEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEE-CcCHHHHHHH
Confidence 0001111 11224789999999644 35678889999997666554 4332111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...+..++...+.+.++++|+||+|+.+..
T Consensus 118 ~~~~~~i~~~~~~~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 118 PKWMKMIDKYASEDAELLLVGNKLDCETDR 147 (192)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred HHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 122345556666688999999999997543
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.45 E-value=1.4e-13 Score=122.83 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+.. ...+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~---------------------------------------- 52 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEF---------------------------------------- 52 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEE----------------------------------------
Confidence 4578999999999999999999998752211 11110000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-- 194 (467)
....+.+ ......+.|+||||... ...+...|++++|++|+++. ++......
T Consensus 53 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 106 (179)
T 1z0f_A 53 -----------GTRIIEV-SGQKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYD-ITRRSTYNHL 106 (179)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEE-TTCHHHHHTH
T ss_pred -----------EEEEEEE-CCeEEEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEe-CcCHHHHHHH
Confidence 0001111 11234789999999543 24568889999997666654 43321111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 195 -DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 -~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+..++.....+.++++|+||+|+.+..
T Consensus 107 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 107 SSWLTDARNLTNPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred HHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 12233445555678999999999997543
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.45 E-value=2.1e-13 Score=126.38 Aligned_cols=105 Identities=11% Similarity=0.187 Sum_probs=60.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC----CCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP----TGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~----~~~rti~Vlt 215 (467)
..+.|+||||... ...+...|++.+|++|+++. ++..........+...+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D-~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLMFD-LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESHHH-------------HHHHHHHHHTTCCEEEEEEE-TTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCcHh-------------HHhHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 4689999999432 56778899999997666554 4432222223334444443 4689999999
Q ss_pred cCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
|+|+.+......+............|+.+.+.+..+++..+..
T Consensus 150 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 192 (217)
T 2f7s_A 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192 (217)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred CCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHH
Confidence 9999754321111111011122345666666655555444433
No 44
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.45 E-value=1.4e-13 Score=131.16 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccc--cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
...+|++||.+|+|||||+|+|+|..++..+... +|+.+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~------------------------------------ 63 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG------------------------------------ 63 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEE------------------------------------
Confidence 4458999999999999999999999876544332 44433211
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
....+...++||||||+.+..... .+.....+......+...+|+++++ ++++. +...
T Consensus 64 -------------------~~~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V-~d~~~-~~~~ 121 (247)
T 3lxw_A 64 -------------------SRRWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLV-TQLGR-FTAQ 121 (247)
T ss_dssp -------------------EEEETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEE-EETTB-CCHH
T ss_pred -------------------EEEECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEE-EeCCC-CCHH
Confidence 111224578999999997643210 0111111222222334888965555 45543 3222
Q ss_pred H--HHHHHHHh-CC--CCCceEEEeccCcccC
Q 012279 195 D--AMKLAREV-DP--TGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 ~--~l~l~~~~-d~--~~~rti~VltK~D~~~ 221 (467)
+ .++.+.++ .+ .+.++|+|.||.|+.+
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 122 DQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 2 23444443 22 1578999999999965
No 45
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.45 E-value=1.5e-13 Score=132.71 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=88.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
.++|+++|++|+|||||+|+|+|..+.......+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 46899999999999999999999764221111111111
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSD 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~ 195 (467)
....+.. ...+.+|||||..+... .... +.+++.|+. ++|.+|++ ++++. ...
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~~----~~~~---e~v~~~~~~~~~~d~vi~V-~D~t~---~e~ 95 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMSP----YSPE---AKVARDYLLSQRADSILNV-VDATN---LER 95 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSSC----SSHH---HHHHHHHHHTTCCSEEEEE-EEGGG---HHH
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccCC----CChH---HHHHHHHHhcCCCCEEEEE-ecCCc---hHh
Confidence 1111222 46899999999987532 2221 345777876 57855554 45543 233
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCCC---cHHHHhcCcccccCCCeEEEEeCChhhhccCc
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT---NALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~ 256 (467)
.+.+..++...+.|+++|+||+|+..... +...+. ..++..++.++++.+.+++..+
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS----YHLGVPVVATSALKQTGVDQVV 155 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBTTTTBSHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH----HHcCCCEEEEEccCCCCHHHHH
Confidence 45566666556899999999999874322 111111 1223455666665555544433
No 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.45 E-value=1.3e-13 Score=121.56 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=71.3
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+++|.+|+|||||+|+|++..+ +....+.+.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 41 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR----------------------------------------- 41 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-----------------------------------------
Confidence 4799999999999999999998765 2222111111100
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~ 196 (467)
..+.+ ......+.++||||.... ..+...|++++|++|+++...+.. +.. ...
T Consensus 42 -----------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 42 -----------KQVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96 (167)
T ss_dssp -----------EEEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00011 112346899999997642 345677888899776665443321 111 112
Q ss_pred HH-HHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MK-LAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~-l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+. +.+.....+.|+++|+||+|+.+..
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDER 124 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred HHHHHHhhCcCCCcEEEEEECccccccc
Confidence 22 2333445678999999999997543
No 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=124.38 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=87.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|.+|+|||||+|+|++..+ +......+......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 53 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 53 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEE--------------------------------------
Confidence 457899999999999999999998875 22222211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
.+.+ ......+.|+||||... ...+...|++.+|++|+++...+.+ .-..
T Consensus 54 --------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~ 104 (206)
T 2bov_A 54 --------------KVVL-DGEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEME-SFAAT 104 (206)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHH-HHHHH
T ss_pred --------------EEEE-CCEEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHH-HHHHH
Confidence 0111 11224788999999654 2566788899999776665443321 1111
Q ss_pred --HHH-HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 196 --AMK-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 196 --~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
.+. +.......+.|+++|+||+|+.+......+.........+..|+.+.+..+.+++..+..+
T Consensus 105 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 105 ADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 122 2223334578999999999997643221111110111223345666666555554444433
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.44 E-value=1.7e-13 Score=122.39 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 44 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF----------------------------------------- 44 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEE-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeE-----------------------------------------
Confidence 456899999999999999999998875221111111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
....+.+ ......+.|+||||... ...+...|++.+|++|+++...+. ..-..
T Consensus 45 -----------~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~ 98 (177)
T 1wms_A 45 -----------LNKDLEV-DGHFVTMQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFSVDDS-QSFQNL 98 (177)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEECCCCGG-------------GHHHHGGGGTTCSEEEEEEETTCH-HHHHTH
T ss_pred -----------EEEEEEE-CCEEEEEEEEeCCCchh-------------hhhhHHHHHhcCCEEEEEEECcCH-HHHHHH
Confidence 0001111 11224789999999644 356778899999976666544332 11111
Q ss_pred --HHHHHHHhC----CCCCceEEEeccCcccCC
Q 012279 196 --AMKLAREVD----PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 --~l~l~~~~d----~~~~rti~VltK~D~~~~ 222 (467)
.+....... ..+.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 131 (177)
T 1wms_A 99 SNWKKEFIYYADVKEPESFPFVILGNKIDISER 131 (177)
T ss_dssp HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHHccccccCCCcEEEEEECCccccc
Confidence 122222221 256899999999999743
No 49
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.44 E-value=1.1e-13 Score=123.74 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=72.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|.+|+|||||+|+|++..+.+ .....+.....-
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~-------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTK-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCCcCceEEE--------------------------------------
Confidence 45689999999999999999999986522 222222211100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.+.+ ......+.|+||||.... ..+...|++.+|++|+++...+. ......
T Consensus 49 --------------~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 99 (181)
T 2fn4_A 49 --------------ICSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDR-QSFNEV 99 (181)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCH-HHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCH-HHHHHH
Confidence 0001 111246889999997542 23456778888976666543332 111111
Q ss_pred ---H-HHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 ---M-KLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 ---l-~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+ .+.+.....+.++++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 130 (181)
T 2fn4_A 100 GKLFTQILRVKDRDDFPVVLVGNKADLESQR 130 (181)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 1 23344556678999999999997643
No 50
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.44 E-value=1.2e-13 Score=122.05 Aligned_cols=117 Identities=18% Similarity=0.247 Sum_probs=71.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+|+|++|+|||||+|+|++..+.+......+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL------------------------------------------ 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE------------------------------------------
Confidence 47999999999999999999988753222111111000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH-
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM- 197 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l- 197 (467)
...+.+ ......+.++||||... ...+...|++++|++|+++. ++.........
T Consensus 42 ----------~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~ 96 (170)
T 1ek0_A 42 ----------TQRVTI-NEHTVKFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYD-VTKPQSFIKARH 96 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEE-TTCHHHHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEe-cCChHHHHHHHH
Confidence 000111 11234789999999654 24457888999997666654 44322122222
Q ss_pred --HHHHHhCCCCCceEEEeccCcccCC
Q 012279 198 --KLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 198 --~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.........+.++++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 97 WVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 2223333457899999999999864
No 51
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=7.8e-14 Score=127.00 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=73.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|.+++|||||+|+|++..+.+... . |...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~-~~~~---------------------------------------- 58 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS-P-TIGA---------------------------------------- 58 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCC-C-CSSE----------------------------------------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcC-C-Ccce----------------------------------------
Confidence 345689999999999999999999887521111 0 0000
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
......+.+ ......+.|+||||... ...+...|++.+|++|+++. ++.......
T Consensus 59 ----------~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~d-~~~~~s~~~ 113 (192)
T 2fg5_A 59 ----------SFMTKTVPC-GNELHKFLIWDTAGQER-------------FHSLAPMYYRGSAAAVIVYD-ITKQDSFYT 113 (192)
T ss_dssp ----------EEEEEEEEC-SSSEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEE-TTCTHHHHH
T ss_pred ----------eEEEEEEEe-CCEEEEEEEEcCCCchh-------------hHhhhHHhhccCCEEEEEEe-CCCHHHHHH
Confidence 000000111 11235789999999654 24456788999997666654 433211122
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++...+.+.++++|+||+|+.+.
T Consensus 114 ~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 114 LKKWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 233344444557899999999999753
No 52
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.44 E-value=2.1e-13 Score=141.41 Aligned_cols=125 Identities=21% Similarity=0.289 Sum_probs=78.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..|.|++||.+|+|||||+|+|+|..+- .+...|
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-----~v~~~~----------------------------------------- 55 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-----IVEDTP----------------------------------------- 55 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC----------------------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-----ccCCCC-----------------------------------------
Confidence 5799999999999999999999997651 111111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+++.+.....+. .....+.+|||||+... .....+.+...+..|++.+|.+|++ +++...+ +...
T Consensus 56 -------g~t~~~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~V-vD~~~~~-~~~d 120 (456)
T 4dcu_A 56 -------GVTRDRIYSSAE-WLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFM-VNGREGV-TAAD 120 (456)
T ss_dssp ------------CEEEECT-TCSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEE-EESSSCS-CHHH
T ss_pred -------CcceeEEEEEEE-ECCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEE-EeCCCCC-ChHH
Confidence 011111111222 23468999999998742 2335677888999999999955554 5565554 3344
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+++.+...+.++++|+||+|+.+.
T Consensus 121 ~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHHHHHHHHcCCCEEEEEECccchhh
Confidence 55778888789999999999998754
No 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.44 E-value=1.1e-13 Score=123.94 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~------------------------------------------ 48 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA------------------------------------------ 48 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE------------------------------------------
Confidence 34689999999999999999999887532211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+ ....+.+ ......+.|+||||... ...+...|++.+|++|+++. ++....-...
T Consensus 49 --------~--~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 103 (181)
T 2efe_B 49 --------F--FSQTLAV-NDATVKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVFD-VTNQASFERA 103 (181)
T ss_dssp --------E--EEEEEEE-TTEEEEEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEEE-TTCHHHHHHH
T ss_pred --------E--EEEEEEE-CCEEEEEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEEE-CCCHHHHHHH
Confidence 0 0001111 11234789999999654 24456788999997666554 4432211222
Q ss_pred ---HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 ---MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 ---l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+..+......+.++++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 104 KKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 222333333478899999999997654
No 54
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.44 E-value=8.5e-14 Score=124.42 Aligned_cols=117 Identities=18% Similarity=0.336 Sum_probs=77.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...++|+|+|++|+|||||+|+|++..+.+.....+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 4678999999999999999999999886432222222111
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
... .+.+ +...+.++||||..... .+...|+..+|++|+++ +++... ...
T Consensus 46 ----------~~~--~~~~---~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~-d~~~~~-~~~ 95 (178)
T 2lkc_A 46 ----------GAY--QVTV---NDKKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVV-AADDGV-MPQ 95 (178)
T ss_dssp ----------CCC--EEEE---TTEEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEE-ETTCCC-CHH
T ss_pred ----------eEE--EEEe---CCceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEE-ECCCCC-cHH
Confidence 011 1111 22467899999976532 12346678888666655 444332 345
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++.+...+.++++|+||+|+.+.
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 566666666667899999999999864
No 55
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=2e-13 Score=125.73 Aligned_cols=120 Identities=20% Similarity=0.316 Sum_probs=75.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccc-cccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
....+|+|+|++|+|||||+|+|++..+ +....+ .+.-..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~-------------------------------------- 64 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFM-------------------------------------- 64 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEE--------------------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEE--------------------------------------
Confidence 3457899999999999999999998775 222111 110000
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc-c-
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A- 192 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~-~- 192 (467)
...+.+ ......+.|+||||... ...+...|++.+|++|+++...+... .
T Consensus 65 --------------~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~ 116 (201)
T 2ew1_A 65 --------------IKTVEI-NGEKVKLQIWDTAGQER-------------FRSITQSYYRSANALILTYDITCEESFRC 116 (201)
T ss_dssp --------------EEEEEE-TTEEEEEEEEEECCSGG-------------GHHHHGGGSTTCSEEEEEEETTCHHHHHT
T ss_pred --------------EEEEEE-CCEEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHH
Confidence 000111 11124689999999643 36678889999997666654433210 0
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 193 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
....+..++...+.+.++++|+||+|+.+.
T Consensus 117 ~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 117 LPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 122334445555667899999999999754
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.44 E-value=1.2e-13 Score=123.35 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=71.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 53 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS----------------------------------------- 53 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEE-----------------------------------------
Confidence 589999999999999999999877533222121111100
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---H
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---D 195 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~ 195 (467)
..+.+ ......+.|+||||... ...+...|++++|++|+++. ++....-. .
T Consensus 54 -----------~~~~~-~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~ 107 (179)
T 2y8e_A 54 -----------KTMYL-EDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYD-ITNTNSFHQTSK 107 (179)
T ss_dssp -----------EEEEE-TTEEEEEEEEEECCSGG-------------GGGGSHHHHHTCSEEEEEEE-TTCHHHHHTHHH
T ss_pred -----------EEEEE-CCeEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEE-CCCHHHHHHHHH
Confidence 00011 11124689999999654 23456788889997666554 43321111 1
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+..+....+.+.++++|+||+|+.+..
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred HHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 2222333334578999999999997543
No 57
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.43 E-value=1.5e-12 Score=135.28 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=91.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCC-cccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~l-P~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-++|+++|.+|+|||||+|+|+|.++. ......+|+-+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~---------------------------------------- 282 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVI---------------------------------------- 282 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSC----------------------------------------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeE----------------------------------------
Confidence 368999999999999999999998642 111122232221
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCC-ccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~-~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.. .+.+ +...++|+||||+. .......... -..+..|++++|.+|+++ +++... ..+
T Consensus 283 ----------~~--~i~~---~g~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~Vv-D~s~~~-s~~ 340 (482)
T 1xzp_A 283 ----------SE--EIVI---RGILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFVL-DASSPL-DEE 340 (482)
T ss_dssp ----------CE--EEEE---TTEEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEEE-ETTSCC-CHH
T ss_pred ----------EE--EEec---CCeEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEEe-cCCCCC-CHH
Confidence 11 1112 23568999999997 4321100000 134567899999655555 444433 223
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
..++...+ .+.++++|+||+|+.+.. ...++.. .......++.+++.+..+++.....+..
T Consensus 341 ~~~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 341 DRKILERI--KNKRYLVVINKVDVVEKI-NEEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp HHHHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEEEECccccccc-CHHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34455555 368999999999997542 2112111 0111235777887777666665555544
No 58
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.43 E-value=2.6e-13 Score=140.00 Aligned_cols=155 Identities=20% Similarity=0.270 Sum_probs=87.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
.|.|++||.+|+|||||+|+|+|..+- .+...|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-----~v~~~~------------------------------------------ 35 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-----IVEDTP------------------------------------------ 35 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-----eecCCC------------------------------------------
Confidence 589999999999999999999997651 111111
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
| +..+.....+ ......+.||||||+... ..+..+.+...+..|++++|.+| +|+++....... ..
T Consensus 36 --g----~T~d~~~~~~-~~~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il-~vvD~~~~~~~~-d~ 101 (436)
T 2hjg_A 36 --G----VTRDRIYSSA-EWLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVII-FMVNGREGVTAA-DE 101 (436)
T ss_dssp -----------CEEEEC-TTCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEE-EEEETTTCSCHH-HH
T ss_pred --C----CccceEEEEE-EECCceEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEE-EEEeCCCCCCHH-HH
Confidence 0 0111111111 123468999999999742 12356678888999999999555 455565554333 34
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCC-CeEEEEeCChhhhccCccH
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~l-g~~~V~~~s~~~~~~~~~~ 258 (467)
.+++.+...+.++++|+||+|+.+...... +.+.+++ .++.+++..+.++.+..+.
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~~~~~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~ 158 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDA 158 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC-----CCC-----SSGGGSSCCCEECBTTTTBTHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECccCccchhhHH-----HHHHcCCCCeEEEeCcCCCChHHHHHH
Confidence 577777777899999999999876432211 1223333 3455555555554444433
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.43 E-value=2.4e-13 Score=120.55 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+... ..|...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~----------------------------------------- 41 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIGF----------------------------------------- 41 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCcc-----------------------------------------
Confidence 457899999999999999999998775211 111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
... .+.+ +...+.++||||... ...+...|++++|++|+++. ++....-...
T Consensus 42 ---------~~~--~~~~---~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~ 93 (171)
T 1upt_A 42 ---------NVE--TVTY---KNLKFQVWDLGGLTS-------------IRPYWRCYYSNTDAVIYVVD-SCDRDRIGIS 93 (171)
T ss_dssp ---------EEE--EEEE---TTEEEEEEEECCCGG-------------GGGGGGGGCTTCSEEEEEEE-TTCCTTHHHH
T ss_pred ---------ceE--EEEE---CCEEEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEE-CCCHHHHHHH
Confidence 000 0111 245789999999764 23456778899997666554 4432212222
Q ss_pred HHHHH-HhCC---CCCceEEEeccCcccCCC
Q 012279 197 MKLAR-EVDP---TGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~-~~d~---~~~rti~VltK~D~~~~~ 223 (467)
..... .+.. .+.|+++|+||+|+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 94 KSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 22222 2222 578999999999998653
No 60
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.43 E-value=5.1e-14 Score=124.41 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+.+......+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~----------------------------------------- 42 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF----------------------------------------- 42 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSE-----------------------------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEE-----------------------------------------
Confidence 346899999999999999999998775221111111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
....+.+ ......+.|+||||.... ..+...|++.+|++|+++...+.. .....
T Consensus 43 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 96 (168)
T 1z2a_A 43 -----------LERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRE-SFEAI 96 (168)
T ss_dssp -----------EEEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHH-HHHTH
T ss_pred -----------EEEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHH-HHHHH
Confidence 0001111 112357899999996542 334677888999766665543321 11111
Q ss_pred ---HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 ---MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 ---l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+..+.... .+.++++|+||+|+.+.
T Consensus 97 ~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 97 SSWREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 22222222 36899999999999764
No 61
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.42 E-value=5e-13 Score=120.47 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=83.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|.+|+|||||+|+|++..+.+.. ...+.......
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~-------------------------------------- 44 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQ-------------------------------------- 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC-CTTCCEEEEEE--------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCchheEEEE--------------------------------------
Confidence 357999999999999999999988753222 22221110000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-- 195 (467)
+ ........+.|+||||... ...+...|+..+|++++++...+.. .-..
T Consensus 45 --------------~-~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 95 (189)
T 4dsu_A 45 --------------V-VIDGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNTK-SFEDIH 95 (189)
T ss_dssp --------------E-EETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHH-HHHHHH
T ss_pred --------------E-EECCcEEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHH-HHHHHH
Confidence 0 1112224578999999654 2345677888899766665543321 1111
Q ss_pred -HHH-HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 196 -AMK-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 196 -~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
.+. +.......+.|+++|+||+|+.+........ .......+..|+.+.+..+.+++.....
T Consensus 96 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 96 HYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQA-QDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHH-HHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 122 2222344578999999999998543322111 1011122345666655555554444433
No 62
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.42 E-value=2e-13 Score=123.82 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 58 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID------------------------------------------ 58 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE------------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE------------------------------------------
Confidence 45689999999999999999999987632211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-- 194 (467)
+ ....+.+ ......+.|+||||.... ..+...|++.+|++|+++...+. ....
T Consensus 59 --------~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~ 113 (189)
T 2gf9_A 59 --------F--KVKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQ-ESFAAV 113 (189)
T ss_dssp --------E--EEEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCH-HHHHTH
T ss_pred --------E--EEEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCH-HHHHHH
Confidence 0 0000111 112357899999996542 23356788999976666544332 1111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+..+......+.++++|+||+|+.+.
T Consensus 114 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 114 QDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 1223334444457899999999999754
No 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.42 E-value=1.7e-13 Score=124.31 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 56 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD------------------------------------------ 56 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE------------------------------------------
Confidence 45689999999999999999999877532211111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHH-HHHHHhhcCCCeEEEEEecCCccc--cc
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDI--AT 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~-~~~~~yi~~~~~iIL~V~~a~~d~--~~ 193 (467)
+ ....+.+ ......+.|+||||..+ .. .+...|++++|++|+++...+... ..
T Consensus 57 --------~--~~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 57 --------F--RERAVDI-DGERIKIQLWDTAGQER-------------FRKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp --------E--EEEEEEE-TTEEEEEEEEECCCSHH-------------HHTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred --------E--EEEEEEE-CCEEEEEEEEECCCchh-------------hhhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 0 0001111 11224789999999543 34 568889999997666654433210 01
Q ss_pred HHHHHHH-HHhCCCCCceEEEeccCcccCC
Q 012279 194 SDAMKLA-REVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 194 ~~~l~l~-~~~d~~~~rti~VltK~D~~~~ 222 (467)
...+..+ +.....+.++++|+||+|+.+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1122222 3333567899999999999754
No 64
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.42 E-value=2e-13 Score=125.49 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+........+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 44 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD------------------------------------------ 44 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCC------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccce------------------------------------------
Confidence 45689999999999999999999987522111111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+. ...+.+ ......+.|+||||.... ..+...|++.+|++|+++. ++........
T Consensus 45 --------~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d-~~~~~s~~~~ 99 (206)
T 2bcg_Y 45 --------FK--IKTVEL-DGKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYD-VTDQESFNGV 99 (206)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEE-TTCHHHHHHH
T ss_pred --------eE--EEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEE-CcCHHHHHHH
Confidence 00 001111 112247899999996542 2335678889996666554 4332211222
Q ss_pred ---HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 ---MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 ---l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+..+......+.++++|+||+|+.+..
T Consensus 100 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 100 KMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 233344445578999999999997643
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=1.9e-13 Score=120.99 Aligned_cols=118 Identities=20% Similarity=0.169 Sum_probs=70.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+|+|.+|+|||||+|+|++..+.+... + |.... ..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~-t~~~~-~~--------------------------------------- 41 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYI-P-TVEDT-YR--------------------------------------- 41 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCC-C-CSCEE-EE---------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-C-Ccccc-EE---------------------------------------
Confidence 579999999999999999999977522111 1 10000 00
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDA 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~ 196 (467)
. .+ ........+.++||||..+ ...+...|++.+|++|+++...+.. +. ....
T Consensus 42 ---------~--~~-~~~~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 96 (172)
T 2erx_A 42 ---------Q--VI-SCDKSICTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSITSRQSLEELKPI 96 (172)
T ss_dssp ---------E--EE-EETTEEEEEEEEECCSCSS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHH
T ss_pred ---------E--EE-EECCEEEEEEEEECCCchh-------------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHH
Confidence 0 00 0111224689999999764 2466778888999776666543321 11 1112
Q ss_pred HHHHHHhCC--CCCceEEEeccCcccCCC
Q 012279 197 MKLAREVDP--TGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~d~--~~~rti~VltK~D~~~~~ 223 (467)
+..+..... .+.|+++|+||+|+.+..
T Consensus 97 ~~~i~~~~~~~~~~pii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 97 YEQICEIKGDVESIPIMLVGNKCDESPSR 125 (172)
T ss_dssp HHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred HHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence 222333321 368999999999997543
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.42 E-value=2.4e-13 Score=119.33 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=82.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
.+|+|+|++|+|||||+|+|++..+.+... ..+.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~----------------------------------------- 41 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECD-PTIEDSYR----------------------------------------- 41 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccC-CccceEEE-----------------------------------------
Confidence 479999999999999999999887532211 11110000
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH--
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA-- 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~-- 196 (467)
..+.+ ......+.++||||.... ..+...|+..+|++|+++...+. ......
T Consensus 42 -----------~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~ 95 (166)
T 2ce2_X 42 -----------KQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNT-KSFEDIHQ 95 (166)
T ss_dssp -----------EEEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCH-HHHHHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCH-HHHHHHHH
Confidence 00011 112346889999996542 34567788889977666654332 111222
Q ss_pred -HHHHHH-hCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 197 -MKLARE-VDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 197 -l~l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
+..+.. ....+.|+++|+||+|+.+........ .......+..++.+......+++..
T Consensus 96 ~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 96 YREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQA-QDLARSYGIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHH-HHHHHHHTCCEEEECTTTCTTHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHH-HHHHHHcCCeEEEecCCCCCCHHHH
Confidence 222222 233478999999999998643221111 1011122345666666555544433
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.42 E-value=2e-13 Score=126.62 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=62.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---HHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 216 (467)
..+.|+||||.... ..+...|+..+|++|+++. ++...... ..+..+....+.+.++++|+||
T Consensus 61 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 61 IKFNVWDTAGQEKK-------------AVLKDVYYIGASGAILFFD-VTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred EEEEEEecCCchhh-------------chHHHHHhhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 46899999997542 2235567888997666554 44322111 2234444455557899999999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHHHH
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~~~ 263 (467)
+|+.+......+............|+.+++..+.+++.....+....
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp TTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99986533222222111222334577777777766666555554443
No 68
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.42 E-value=2.3e-13 Score=123.73 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+.+......+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 58 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----------------------------------------- 58 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-----------------------------------------
Confidence 455899999999999999999998876332211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-- 194 (467)
. ...+.+ ......+.|+||||.... ..+...|++++|++|+++...+.+ .-.
T Consensus 59 ---------~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 112 (191)
T 2a5j_A 59 ---------G--ARMVNI-DGKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRE-TFNHL 112 (191)
T ss_dssp ---------E--EEEEEE-TTEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHH-HHHTH
T ss_pred ---------E--EEEEEE-CCEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 0 001111 112247899999996542 334677889999776665543321 111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+..+......+.++++|+||+|+.+.
T Consensus 113 ~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 113 TSWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 2233334444557899999999999753
No 69
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.42 E-value=4.4e-13 Score=123.11 Aligned_cols=121 Identities=22% Similarity=0.288 Sum_probs=73.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|++++|||||+|+|++..+-+ ...+ |.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~-t~------------------------------------------ 62 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGS-TI------------------------------------------ 62 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCC-Cc------------------------------------------
Confidence 345689999999999999999999887521 1111 00
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT- 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~- 193 (467)
+ ..+. ...+.+ ......+.|+||||..+ ...+...|++++|++|+++...+.. +..
T Consensus 63 ----~--~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 120 (201)
T 2hup_A 63 ----G--VDFT--MKTLEI-QGKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSV 120 (201)
T ss_dssp --------CEE--EEEEEE-TTEEEEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTH
T ss_pred ----c--eEEE--EEEEEE-CCEEEEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHH
Confidence 0 0000 001111 11225789999999654 3567889999999776666543321 111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
...+..+......+.++++|+||+|+.+.
T Consensus 121 ~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 121 PHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 11223334444457899999999999753
No 70
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.41 E-value=2.6e-13 Score=129.18 Aligned_cols=122 Identities=8% Similarity=0.145 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC---CCCcchhhhcchhhHHHhccCCccccCC----HHHHHHHHHhhCCCCCcc
Q 012279 332 AGAQLYTILELCRAFDRIFKEHLDGGR---PGGDRIYGVFDNQLPAALRKLPFDRHLS----LQNVKKVVSEADGYQPHL 404 (467)
Q Consensus 332 ~~~~~~~l~~~~~~f~~~~~~~i~g~~---~~~~ri~~~f~~~~~~~~~~~~~~~~~~----~~~i~~ii~~~~g~~p~~ 404 (467)
+.++..+|.+.++.|.+++.+.+.|.. .|+.|++..+++.|.+|...++...... .++|.....+++|++++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 457788999999999999999999986 4567999999999999987664322222 245666667899999888
Q ss_pred cCChHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 012279 405 IAPEQGYRRLIEGSLSYFRGPAEASADAVHFVLKELVRKSIGETQVELYK 454 (467)
Q Consensus 405 ~~pe~~f~~li~~~i~~~~~P~~~~~~~v~~~l~~~v~~~~~~~~~~~~~ 454 (467)
|+|+.+|+.||++||++|++||.+|++.|+++|.+++.+++.. .+.+||
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~-~F~rFp 131 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIK-NFEEFF 131 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhH
Confidence 9999999999999999999999999999999999999999874 333343
No 71
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.41 E-value=5.8e-13 Score=117.27 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=71.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+++|++|+|||||+|+|++..+ +.. ..|..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~~--~~t~~--------------------------------------------- 33 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIG--------------------------------------------- 33 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SCC--CCCSS---------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Ccc--cCcCc---------------------------------------------
Confidence 699999999999999999998775 211 11110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 199 (467)
+. ... +. .....+.++||||... ...+...|++++|++|+++. ++..-.-.....+
T Consensus 34 -----~~--~~~--~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~ 89 (164)
T 1r8s_A 34 -----FN--VET--VE-YKNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVD-SNDRERVNEAREE 89 (164)
T ss_dssp -----CC--EEE--EE-CSSCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEE-TTCGGGHHHHHHH
T ss_pred -----ee--EEE--EE-ECCEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEE-CCCHHHHHHHHHH
Confidence 00 001 11 1346799999999854 35678889999997766554 4332212222233
Q ss_pred HHHh-C---CCCCceEEEeccCcccCC
Q 012279 200 AREV-D---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 200 ~~~~-d---~~~~rti~VltK~D~~~~ 222 (467)
...+ . ..+.++++|+||+|+.+.
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 90 LMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 3332 2 236899999999999764
No 72
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=3.9e-13 Score=121.95 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+++|||||+|+|++..+.+......+...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 52 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF----------------------------------------- 52 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE-----------------------------------------
Confidence 346899999999999999999999876322211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
....+.+ ......+.|+||||.... ..+...|++++|++|+++. ++........
T Consensus 53 -----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~ 106 (195)
T 1x3s_A 53 -----------KVKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYD-VTRRDTFVKL 106 (195)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEE-TTCHHHHHTH
T ss_pred -----------EEEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEE-CcCHHHHHHH
Confidence 0000111 112357899999996542 3346788899996666554 4432212222
Q ss_pred HHHHHHhCC----CCCceEEEeccCcccCC
Q 012279 197 MKLAREVDP----TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~----~~~rti~VltK~D~~~~ 222 (467)
..+...+.. .+.++++|+||+|+.+.
T Consensus 107 ~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 107 DNWLNELETYCTRNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp HHHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred HHHHHHHHHhcCcCCCcEEEEEECCcCccc
Confidence 233344432 46789999999999543
No 73
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=126.83 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=84.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+. ......+.... ...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~-~~~------------------------------------ 64 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTY-SKI------------------------------------ 64 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEE-EEE------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEE-EEE------------------------------------
Confidence 4568999999999999999999998763 22211111110 000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.........+.|+||||.... ..+...|++.+|++|+++...+. ..-...
T Consensus 65 ----------------~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 114 (201)
T 3oes_A 65 ----------------VTLGKDEFHLHLVDTAGQDEY-------------SILPYSFIIGVHGYVLVYSVTSL-HSFQVI 114 (201)
T ss_dssp ----------------EC----CEEEEEEEECCCCTT-------------CCCCGGGTTTCCEEEEEEETTCH-HHHHHH
T ss_pred ----------------EEECCEEEEEEEEECCCccch-------------HHHHHHHHhcCCEEEEEEeCCCH-HHHHHH
Confidence 001122356789999997652 23356788899976666544332 112222
Q ss_pred HHHHHHhC----CCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 197 MKLAREVD----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 197 l~l~~~~d----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
..+...+. ..+.++++|+||+|+.+................+..|+.+.+..+.+++..+..+
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 23333332 3367999999999987544321111110111223455566655555554444433
No 74
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.41 E-value=5.2e-13 Score=120.02 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=86.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+ +....+.+.... ..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 57 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LK------------------------------------- 57 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EE-------------------------------------
Confidence 455899999999999999999998765 222222111110 00
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~ 194 (467)
.+ ........+.++||||.... ..+...|++++|++|+++...+.. +. ..
T Consensus 58 --------------~~-~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 58 --------------HT-EIDNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp --------------EE-EETTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EE-EeCCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 11112235778999996542 334667888899766665543321 00 11
Q ss_pred HHHH-HHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeC-ChhhhccCcc
Q 012279 195 DAMK-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNR-SQADINRNID 257 (467)
Q Consensus 195 ~~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~-s~~~~~~~~~ 257 (467)
..+. +.+.....+.++++|+||+|+.+......+.........+..|+.+.+. ...+++..+.
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence 1122 2333455678999999999997643321111111112223567777766 5555444333
No 75
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.41 E-value=4e-13 Score=119.55 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|++|+|||||+|+|+|..+.+....+.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~------------------------------------------- 39 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED------------------------------------------- 39 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS-------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc-------------------------------------------
Confidence 3568999999999999999999998752221111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.....+.+ ......+.++||||..... ...+...|++.++++|+++...+.. .-...
T Consensus 40 ----------~~~~~~~~-~~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~ 96 (175)
T 2nzj_A 40 ----------VYERTLTV-DGEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADRG-SFESA 96 (175)
T ss_dssp ----------EEEEEEEE-TTEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHH-HHHHH
T ss_pred ----------eeEEEEEE-CCEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCHH-HHHHH
Confidence 00001111 1122468899999975421 1345677888899776665543321 11122
Q ss_pred HHHHHHh----CCCCCceEEEeccCcccCCC
Q 012279 197 MKLAREV----DPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~----d~~~~rti~VltK~D~~~~~ 223 (467)
..+...+ ...+.|+++|+||+|+.+..
T Consensus 97 ~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~ 127 (175)
T 2nzj_A 97 SELRIQLRRTHQADHVPIILVGNKADLARCR 127 (175)
T ss_dssp HHHHHHHHHCC----CCEEEEEECTTCTTTC
T ss_pred HHHHHHHHHhhccCCCCEEEEEEChhhcccc
Confidence 2222222 23478999999999997643
No 76
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.41 E-value=4.2e-13 Score=118.51 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=70.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccc-cccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T-r~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..+|+|+|.+|+|||||+|+|++..+.+......+ ...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 44 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL----------------------------------------- 44 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE-----------------------------------------
Confidence 45899999999999999999998765322111100 000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
...+.+ ......+.++||||... ...+...|++++|++|+++. ++....-...
T Consensus 45 ------------~~~~~~-~~~~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 97 (170)
T 1r2q_A 45 ------------TQTVCL-DDTTVKFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVVYD-ITNEESFARA 97 (170)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEE-TTCHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEEEE-CCCHHHHHHH
Confidence 000111 11235789999999654 24557788999997666654 4332111222
Q ss_pred ---HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 ---MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 ---l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+..+......+.++++|.||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 98 KNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 22223333446788999999999754
No 77
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=125.34 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+++|||||+|+|++..+.+......+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~------------------------------------------ 61 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVE------------------------------------------ 61 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CC------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccce------------------------------------------
Confidence 45689999999999999999999987522111111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-- 194 (467)
+. ...+.+ ......+.|+||||... ...+...|++.+|++|+++...+.. .-.
T Consensus 62 --------~~--~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 116 (200)
T 2o52_A 62 --------FG--SRVVNV-GGKTVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRE-TYNSL 116 (200)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTHHH-------------HSCCCHHHHTTCSEEEEEEETTCHH-HHHTH
T ss_pred --------eE--EEEEEE-CCeeeEEEEEcCCCcHh-------------HHHHHHHHhccCCEEEEEEECcCHH-HHHHH
Confidence 00 001111 11225789999999543 2344678899999776665543321 111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCCCCc-HHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 195 -DAMKLAREVDPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 195 -~~l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
..+..+......+.++++|+||+|+.+.... ..+... ........|+.+.+..+.+++..+..+.
T Consensus 117 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 117 AAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp HHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 1222333444457899999999999753321 111110 1112234566666666655554444443
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.40 E-value=1.9e-13 Score=125.42 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 46 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL---------------------------------------- 46 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE----------------------------------------
Confidence 4568999999999999999999998763322221111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
...+.+ ......+.|+||||.... ..+...|++++|++|+++. ++.......
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 99 (207)
T 1vg8_A 47 ------------TKEVMV-DDRLVTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVFD-VTAPNTFKTL 99 (207)
T ss_dssp ------------EEEEES-SSCEEEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEEE-TTCHHHHHTH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEEE-CCCHHHHHHH
Confidence 000111 112247899999996542 2334567889996666554 433211111
Q ss_pred --HHH-HHHHhC---CCCCceEEEeccCcccCC
Q 012279 196 --AMK-LAREVD---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 --~l~-l~~~~d---~~~~rti~VltK~D~~~~ 222 (467)
.+. +..... +.+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 100 DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 111 222222 246799999999999743
No 79
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.40 E-value=8.8e-13 Score=136.76 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=80.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...++|+++|.+|+|||||+|+|+|..... ++..|
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~-----~~~~~---------------------------------------- 227 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI-----VSNVA---------------------------------------- 227 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE-----ECC------------------------------------------
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccc-----cCCCC----------------------------------------
Confidence 356799999999999999999999876422 22211
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
|.+.... ...+.. +...++||||||+.+........ +....+ ...|++.+|.+|+ |+++...+. .
T Consensus 228 ----gtt~~~~--~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~---e~~~~~~~~~~~~~ad~~ll-viD~~~~~~-~ 293 (456)
T 4dcu_A 228 ----GTTRDAV--DTSFTY---NQQEFVIVDTAGMRKKGKVYETT---EKYSVLRALKAIDRSEVVAV-VLDGEEGII-E 293 (456)
T ss_dssp --------CTT--SEEEEE---TTEEEEETTGGGTTTBTTBCCCC---SHHHHHHHHHHHHHCSEEEE-EEETTTCCC-H
T ss_pred ----CeEEEEE--EEEEEE---CCceEEEEECCCCCcCcccchHH---HHHHHHHHHHHHhhCCEEEE-EEeCCCCcC-H
Confidence 1000000 111111 23478999999987643221111 112222 4468899995555 456665553 3
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
....++..+...+.++++|+||+|+.+...
T Consensus 294 ~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 294 QDKRIAGYAHEAGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGSCCCS
T ss_pred HHHHHHHHHHHcCCCEEEEEEChhcCCCch
Confidence 344566666667899999999999987554
No 80
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.40 E-value=5.5e-13 Score=120.38 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=75.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
+++|+|+|++|+|||||+|+|+|..+.+.....+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~------------------------------------------ 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI------------------------------------------ 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee------------------------------------------
Confidence 36899999999999999999999875221111112211
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC-CCe--EEEEEecCCccccc-
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK-PNS--VILAISPANQDIAT- 193 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~-~~~--iIL~V~~a~~d~~~- 193 (467)
..+.+ ..+.++||||+..... .+....+.+..+...|++. .+. +++.|+++......
T Consensus 39 ------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 39 ------------IEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ------------EEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ------------EEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 11111 1789999999765321 1333345677778888776 553 34445554321100
Q ss_pred H---------HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 S---------DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~---------~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
. ....+.+.+...+.|+++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 0 01223344444578999999999998653
No 81
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=1.1e-13 Score=125.93 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=76.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----------------------------------------- 59 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGID----------------------------------------- 59 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTT-----------------------------------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeE-----------------------------------------
Confidence 456789999999999999999999977532211111000
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-c
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-T 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~ 193 (467)
.....+.+ ......+.|+||||... ...+...|++.+|++|+++...+.. +. .
T Consensus 60 -----------~~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 114 (191)
T 3dz8_A 60 -----------FKVKTVYR-HEKRVKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESFNAV 114 (191)
T ss_dssp -----------EEEEEEEE-TTTTEEEEEECHHHHHH-------------CHHHHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred -----------EEEEEEEE-CCEEEEEEEEeCCChHH-------------HHHHHHHHHccCCEEEEEEECcCHHHHHHH
Confidence 00001111 12335789999999432 4677889999999766665443321 10 1
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...+..++.....+.++++|+||+|+.+..
T Consensus 115 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 115 QDWATQIKTYSWDNAQVILVGNKCDMEEER 144 (191)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 223334445555678999999999987543
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.40 E-value=2.8e-13 Score=123.41 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=72.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...++|+|+|.+++|||||+|+|++..+......+ |...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~---------------------------------------- 53 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGY---------------------------------------- 53 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSE----------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccce----------------------------------------
Confidence 46678999999999999999999998862211111 1100
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
... .+ ......+.|+||||... ...+...|++++|++|+++...+.+ .-..
T Consensus 54 ----------~~~----~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~-s~~~ 104 (199)
T 4bas_A 54 ----------NVE----TF-EKGRVAFTVFDMGGAKK-------------FRGLWETYYDNIDAVIFVVDSSDHL-RLCV 104 (199)
T ss_dssp ----------EEE----EE-EETTEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEETTCGG-GHHH
T ss_pred ----------eEE----EE-EeCCEEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEEEECCcHH-HHHH
Confidence 000 11 12345789999999865 2455678899999766665544322 1222
Q ss_pred HHHHHHHhCC-----------CCCceEEEeccCcccCCC
Q 012279 196 AMKLAREVDP-----------TGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~l~~~~d~-----------~~~rti~VltK~D~~~~~ 223 (467)
.......+.. .+.++++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 105 VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 2223333222 278999999999998653
No 83
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.40 E-value=4.5e-13 Score=118.64 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=63.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
+.+|+++|++|+|||||+|+|+|..+-.......|....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTY----------------------------------------- 40 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEE-----------------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCee-----------------------------------------
Confidence 358999999999999999999987642211111111000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~ 195 (467)
...+. .......+.++||||..... ..+...|++.+|++++++...+.. +. ...
T Consensus 41 -----------~~~~~-~~~~~~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (169)
T 3q85_A 41 -----------ERRIM-VDKEEVTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96 (169)
T ss_dssp -----------EEEEE-ETTEEEEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -----------eEEEE-ECCeEEEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHH
Confidence 00011 11223578899999986521 124555677889766665543321 10 111
Q ss_pred HHH-HHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 AMK-LAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~-l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+. +.+.....+.|+++|+||+|+.+..
T Consensus 97 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 97 TLLRLRAGRPHHDLPVILVGNKSDLARSR 125 (169)
T ss_dssp HHHHHHHHSTTSCCCEEEEEECTTCGGGC
T ss_pred HHHHHHhcccCCCCCEEEEeeCcchhhcc
Confidence 122 2222223478999999999987543
No 84
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.40 E-value=2.7e-13 Score=140.81 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+-.+|+++|.+|+|||||+|+|+|.++. .++..|
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-----~vs~~~----------------------------------------- 265 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERA-----IVSHMP----------------------------------------- 265 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-----ccCCCC-----------------------------------------
Confidence 3456999999999999999999998642 222222
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHH-HHHHHHHhhcCCCeEEEEEecCCcccccH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED-IESMVRSYVEKPNSVILAISPANQDIATS- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~-i~~~~~~yi~~~~~iIL~V~~a~~d~~~~- 194 (467)
|.+..+... .+.+ +..++.||||||+.+. .+..+. .-..+..|+..+|.+++++ +++......
T Consensus 266 ---gtT~d~~~~--~i~~---~g~~l~liDT~G~~~~------~~~ve~~gi~~~~~~~~~aD~vl~Vv-D~s~~~s~~~ 330 (476)
T 3gee_A 266 ---GTTRDYIEE--CFIH---DKTMFRLTDTAGLREA------GEEIEHEGIRRSRMKMAEADLILYLL-DLGTERLDDE 330 (476)
T ss_dssp ----------CE--EEEE---TTEEEEEEC--------------------------CCCSSCSEEEEEE-ETTTCSSGGG
T ss_pred ---CceEEEEEE--EEEE---CCeEEEEEECCCCCcc------hhHHHHHHHHHHHhhcccCCEEEEEE-ECCCCcchhh
Confidence 000000001 1112 2357999999999762 111111 1134567889999655554 554433221
Q ss_pred --HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 195 --DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 195 --~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
....+.+.+. +.++++|+||+|+.+......+.+... . ...++.+++..+.+++.....
T Consensus 331 ~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~ 391 (476)
T 3gee_A 331 LTEIRELKAAHP--AAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQH 391 (476)
T ss_dssp HHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHH
T ss_pred hHHHHHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHH
Confidence 4455666665 689999999999986543211111111 0 134555555555555444433
No 85
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.40 E-value=1.8e-13 Score=123.09 Aligned_cols=120 Identities=14% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+.+.....++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~----------------------------------------- 45 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF----------------------------------------- 45 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-----------------------------------------
Confidence 456899999999999999999998765211111111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
. ...+.+ ......+.|+||||... ...+...|++++|++|+++. ++....-...
T Consensus 46 ---------~--~~~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 99 (183)
T 2fu5_C 46 ---------K--IRTIEL-DGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGIMLVYD-ITNEKSFDNI 99 (183)
T ss_dssp ---------E--EEEEEE-TTEEEEEEEEEC----------------------CCTTTTTCSEEEEEEE-TTCHHHHHHH
T ss_pred ---------E--EEEEEE-CCEEEEEEEEcCCCChh-------------hhhhHHHHHhcCCEEEEEEE-CcCHHHHHHH
Confidence 0 001111 11225789999999654 24556778899997666654 4332111222
Q ss_pred ---HHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 197 ---MKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 ---l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+..+......+.++++|+||+|+.+..
T Consensus 100 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 100 RNWIRNIEEHASADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred HHHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence 223333334578999999999997643
No 86
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.40 E-value=4e-13 Score=122.95 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+.+......
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------------------------------------- 61 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL--------------------------------------------- 61 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc---------------------------------------------
Confidence 45789999999999999999999887521110000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc---
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--- 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~--- 193 (467)
| .......+.+ ......+.|+||||... ...+...|++.+|++|+++. ++.....
T Consensus 62 ---~----~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d-~~~~~s~~~~ 119 (199)
T 2p5s_A 62 ---G----VDFQMKTLIV-DGERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYD-VTCEKSFLNI 119 (199)
T ss_dssp ----------CEEEEEEE-TTEEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEE-TTCHHHHHTH
T ss_pred ---c----ceeEEEEEEE-CCEEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEE-CCChHHHHHH
Confidence 0 0000011111 12234689999999654 25668888999997666654 4332111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCccc
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
...+..++.....+.++++|+||+|+.
T Consensus 120 ~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 120 REWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 122334455555578999999999986
No 87
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.40 E-value=4.3e-13 Score=120.02 Aligned_cols=153 Identities=11% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 457899999999999999999999875221111111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
....+.+.+.....+.|+||||... ...+...|++.+|++|+++...+. ..-...
T Consensus 46 -----------~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 100 (182)
T 1ky3_A 46 -----------LTKEVTVDGDKVATMQVWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVTNA-SSFENI 100 (182)
T ss_dssp -----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCH-HHHHTH
T ss_pred -----------EEEEEEEcCCcEEEEEEEECCCChH-------------hhhhhHHHhhcCCEEEEEEECCCh-HHHHHH
Confidence 0011112112335789999999543 355677889999976666544332 111111
Q ss_pred HHHH----HHh---CCCCCceEEEeccCcccCCCCc-----HHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 197 MKLA----REV---DPTGERTFGVLTKLDLMDKGTN-----ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 197 l~l~----~~~---d~~~~rti~VltK~D~~~~~~~-----~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
..+. ... ...+.|+++|+||+|+.+.... ..++.. ......|+.+.+.++.+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 101 KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBSHHHHHHH
T ss_pred HHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCCCeEEEEecCCCCCHHHHHHH
Confidence 1121 222 1257899999999998643221 111111 012345666766666555444433
No 88
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.39 E-value=1.8e-13 Score=141.53 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=80.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccc-ccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
+-.+|+++|.+|+|||||+|+|+|.++.... ...+|+...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~--------------------------------------- 263 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV--------------------------------------- 263 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH---------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE---------------------------------------
Confidence 3456999999999999999999997642111 111222110
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHH-HHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI-ESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i-~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.. .+.+ +..+++||||||+.+. .+..+.+ -..+..++..+|.+++ |++++.... .
T Consensus 264 -----------~~--~i~~---~g~~v~liDT~G~~~~------~~~ve~~gi~~~~~~~~~aD~vl~-VvD~s~~~~-~ 319 (462)
T 3geh_A 264 -----------ES--QLVV---GGIPVQVLDTAGIRET------SDQVEKIGVERSRQAANTADLVLL-TIDAATGWT-T 319 (462)
T ss_dssp -----------HH--EEEE---TTEEEEECC--------------------------CCCCSCSEEEE-EEETTTCSC-H
T ss_pred -----------EE--EEEE---CCEEEEEEECCccccc------hhHHHHHHHHHHhhhhhcCCEEEE-EeccCCCCC-H
Confidence 00 0111 2356899999999652 1111111 1335667888995555 455554443 3
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~ 260 (467)
....+.+.+.. .++++|+||+|+.+..... .+ ..+.....++.++...+.+++.....+.
T Consensus 320 ~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~--~~--~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 320 GDQEIYEQVKH--RPLILVMNKIDLVEKQLIT--SL--EYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp HHHHHHHHHTT--SCEEEEEECTTSSCGGGST--TC--CCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhccC--CcEEEEEECCCCCcchhhH--HH--HHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 33455666643 6999999999998643211 11 1122234667777777766655444443
No 89
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.38 E-value=2.8e-13 Score=121.56 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=83.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|++|+|||||+|+|++..+ +......+..... .
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~-~------------------------------------- 45 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFT-K------------------------------------- 45 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE-E-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEE-E-------------------------------------
Confidence 456899999999999999999997664 2222222211110 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.+ ........+.|+||||.... ..+...|++.+|++|+++...+.+ .-...
T Consensus 46 --------------~~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~ 96 (181)
T 3t5g_A 46 --------------LI-TVNGQEYHLQLVDTAGQDEY-------------SIFPQTYSIDINGYILVYSVTSIK-SFEVI 96 (181)
T ss_dssp --------------EE-EETTEEEEEEEEECCCCCTT-------------CCCCGGGTTTCSEEEEEEETTCHH-HHHHH
T ss_pred --------------EE-EECCEEEEEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECCCHH-HHHHH
Confidence 00 11112246789999997653 223556788899766665543321 11111
Q ss_pred H----HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHH
Q 012279 197 M----KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (467)
Q Consensus 197 l----~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~ 259 (467)
. .+.+.....+.++++|+||+|+.+......+.........+..|+.+.+....+++..+..+
T Consensus 97 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 97 KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp HHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence 1 22333344578999999999987544321111111112223345666655555554444333
No 90
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.38 E-value=1.3e-12 Score=118.31 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|..|+|||||+|+|++..+.+... .++......
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~--------------------------------------- 60 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRK--------------------------------------- 60 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEEE---------------------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccC-CccceEEEE---------------------------------------
Confidence 3589999999999999999999887532211 111111000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH-
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA- 196 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~- 196 (467)
.+.+ ......+.|+||||... ...+...|++.++++|+++...+. ....+.
T Consensus 61 -------------~~~~-~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 112 (190)
T 3con_A 61 -------------QVVI-DGETCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNS-KSFADIN 112 (190)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCH-HHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCChHH-------------HHHHHHHhhCcCCEEEEEEECcCH-HHHHHHH
Confidence 0111 11224688999999643 345677889999977665544332 111222
Q ss_pred --HHHHHH-hCCCCCceEEEeccCcccCC
Q 012279 197 --MKLARE-VDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 --l~l~~~-~d~~~~rti~VltK~D~~~~ 222 (467)
+..+.. ....+.++++|+||+|+.+.
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 222222 23357899999999998763
No 91
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.38 E-value=2e-12 Score=115.69 Aligned_cols=125 Identities=21% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCccc-ccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
-.+|+++|.+|+|||||+|+|+|..+...+ ...+|+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~----------------------------------------- 42 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV----------------------------------------- 42 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-----------------------------------------
Confidence 347999999999999999999997641111 11111111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSD 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~~ 195 (467)
... .+.+ +...+.++||||+.+.. ......-...+..|++.+|.+++++...+.. .....
T Consensus 43 ---------~~~--~~~~---~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~ 103 (172)
T 2gj8_A 43 ---------LRE--HIHI---DGMPLHIIDTAGLREAS-----DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE 103 (172)
T ss_dssp ---------EEE--EEEE---TTEEEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHH
T ss_pred ---------eeE--EEEE---CCeEEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH
Confidence 000 1111 12358899999986521 1111111122446788999666655433322 11222
Q ss_pred HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..+....+.+.|+++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 104 IWPEFIARLPAKLPITVVRNKADITGE 130 (172)
T ss_dssp HCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred HHHHHHHhcccCCCEEEEEECccCCcc
Confidence 333444444557899999999998653
No 92
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.38 E-value=9.3e-13 Score=135.78 Aligned_cols=128 Identities=18% Similarity=0.292 Sum_probs=78.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..++|+++|.+|+|||||+|+|+|..+...+. ..+|+-.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~---------------------------------------- 213 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA---------------------------------------- 213 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-------------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee----------------------------------------
Confidence 46799999999999999999999987521111 1111111
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH-HHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~-~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
. ...+.. +...+.||||||+.+..... +.+ +....+ ...|++.+|++++ |.+++.....+
T Consensus 214 ----------~--~~~~~~---~~~~~~l~DT~G~~~~~~~~--~~~-e~~~~~~~~~~~~~ad~~ll-v~D~~~~~s~~ 274 (436)
T 2hjg_A 214 ----------V--DTSFTY---NQQEFVIVDTAGMRKKGKVY--ETT-EKYSVLRALKAIDRSEVVAV-VLDGEEGIIEQ 274 (436)
T ss_dssp ----------C--CEEEEE---TTEEEEETTHHHHTCBTTBC--CCC-SHHHHHHHHHHHHHCSEEEE-EEETTTCCCHH
T ss_pred ----------e--EEEEEE---CCeEEEEEECCCcCcCcccc--chH-HHHHHHHHHHHHHhCCEEEE-EEcCCcCCcHH
Confidence 0 001111 22458999999986543211 111 112222 3468888995555 45565555333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 224 (467)
...++..+...+.++++|+||+|+.+...
T Consensus 275 -~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 275 -DKRIAGYAHEAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECGGGSCCCT
T ss_pred -HHHHHHHHHHcCCcEEEEEECccCCCcch
Confidence 34566666667899999999999987544
No 93
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.38 E-value=2.2e-13 Score=121.72 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
...+|+|+|++|+|||||+|+|++..+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 346899999999999999999998775
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.38 E-value=6.1e-13 Score=120.63 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=71.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|.+|+|||||+|+|++...++....+ |...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-t~~~---------------------------------------- 57 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TIGF---------------------------------------- 57 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC-CSSE----------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC-ccce----------------------------------------
Confidence 35678999999999999999999998732322211 1110
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.. - .+. .+...+.|+||||.... ..+...|++++|++|+++. ++....-..
T Consensus 58 ----------~~--~--~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~ 108 (190)
T 2h57_A 58 ----------SI--E--KFK-SSSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVID-SSDRLRMVV 108 (190)
T ss_dssp ----------EE--E--EEE-CSSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEE-TTCHHHHHH
T ss_pred ----------eE--E--EEE-ECCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEE-CCCHHHHHH
Confidence 00 0 111 12368999999996542 3456788999996666554 443211122
Q ss_pred HHHHHHH----hCC--CCCceEEEeccCcccCC
Q 012279 196 AMKLARE----VDP--TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~----~d~--~~~rti~VltK~D~~~~ 222 (467)
....... ... .+.++++|+||+|+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 109 AKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 2122222 111 47899999999999764
No 95
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.37 E-value=3.9e-12 Score=127.79 Aligned_cols=127 Identities=24% Similarity=0.352 Sum_probs=75.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...|.|+++|.+|||||||+|+|+|..+...+...+|+-|+.-
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~------------------------------------- 219 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY------------------------------------- 219 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE-------------------------------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE-------------------------------------
Confidence 3577899999999999999999999875222222333333110
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--cc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~--~~ 193 (467)
.+.+ ++ ..+.++||||+... .|.+..+.+.. +..++..+|.+++++ +++... ..
T Consensus 220 ---------------~i~~--~g-~~v~l~DT~G~i~~----lp~~lve~f~~-tl~~~~~aD~il~Vv-D~s~~~~~~~ 275 (364)
T 2qtf_A 220 ---------------AIPI--NN-RKIMLVDTVGFIRG----IPPQIVDAFFV-TLSEAKYSDALILVI-DSTFSENLLI 275 (364)
T ss_dssp ---------------EEEE--TT-EEEEEEECCCBCSS----CCGGGHHHHHH-HHHGGGGSSEEEEEE-ETTSCHHHHH
T ss_pred ---------------EEEE--CC-EEEEEEeCCCchhc----CCHHHHHHHHH-HHHHHHhCCEEEEEE-ECCCCcchHH
Confidence 1122 22 46789999998652 24455555544 355788899655554 443321 01
Q ss_pred ---HHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 194 ---SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ---~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.....+++.+...+.++++|.||+|+.+.+
T Consensus 276 ~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 276 ETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 112345666665678999999999998654
No 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=6.3e-13 Score=120.22 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+. . ..|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-----~~~t---------------------------------------- 47 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H-----TSPT---------------------------------------- 47 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E-----EECC----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c-----CcCC----------------------------------------
Confidence 4568999999999999999999987752 1 1110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.++... .+.+ +...+.++||||..+ ...+...|++++|++|+++. ++..-.-...
T Consensus 48 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~ 102 (187)
T 1zj6_A 48 ------IGSNVE--EIVI---NNTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVD-STDRERISVT 102 (187)
T ss_dssp ------SCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEE-TTCTTTHHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEe-CCCHHHHHHH
Confidence 011111 1112 236889999999854 23456788899997666654 4432222223
Q ss_pred HHHHHHh-C---CCCCceEEEeccCcccCC
Q 012279 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~-d---~~~~rti~VltK~D~~~~ 222 (467)
..+...+ . ..+.++++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 103 REELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 3333333 2 257899999999999764
No 97
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.36 E-value=3.7e-13 Score=119.49 Aligned_cols=117 Identities=26% Similarity=0.435 Sum_probs=69.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (467)
++|+++|++|+|||||+|+|+|..+ +.+. .|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~-----~~------------------------------------------- 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGN-----WP------------------------------------------- 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccC-----CC-------------------------------------------
Confidence 5799999999999999999999764 2111 11
Q ss_pred cCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHH
Q 012279 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 119 ~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+.+ +....-.+.+ +...+.++||||..+.. +... .+.+...|+. +++.+++ |.++... ...
T Consensus 35 -~~t--~~~~~~~~~~---~~~~l~i~Dt~G~~~~~----~~~~---~~~~~~~~~~~~~~~~~i~-v~D~~~~---~~~ 97 (165)
T 2wji_A 35 -GVT--VEKKEGEFEY---NGEKFKVVDLPGVYSLT----ANSI---DEIIARDYIINEKPDLVVN-IVDATAL---ERN 97 (165)
T ss_dssp ---C--CCCCEEEEEE---TTEEEEEEECCCCSCSS----SSSH---HHHHHHHHHHHHCCSEEEE-EEETTCH---HHH
T ss_pred -Ccc--eeeeEEEEEE---CCcEEEEEECCCcccCC----Ccch---hHHHHHHHHhcCCCCEEEE-EecCCch---hHh
Confidence 000 0000111111 23578999999987642 1111 2355677765 7885555 4444431 122
Q ss_pred HHHHHHhCCCCCceEEEeccCcccC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
..+..++...+.++++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhcc
Confidence 3344444445789999999999864
No 98
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.36 E-value=1.3e-12 Score=117.91 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++... ....+ |...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~-t~~~----------------------------------------- 52 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTISP-TLGF----------------------------------------- 52 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCCC-CSSE-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Ccccc-cCcc-----------------------------------------
Confidence 456899999999999999999998762 11111 1110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
... .+.+ +...+.++||||..+ ...+...|++++|++|+++. ++....-...
T Consensus 53 ---------~~~--~~~~---~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~ 104 (186)
T 1ksh_A 53 ---------NIK--TLEH---RGFKLNIWDVGGQKS-------------LRSYWRNYFESTDGLIWVVD-SADRQRMQDC 104 (186)
T ss_dssp ---------EEE--EEEE---TTEEEEEEEECCSHH-------------HHTTGGGGCTTCSEEEEEEE-TTCGGGHHHH
T ss_pred ---------ceE--EEEE---CCEEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEE-CcCHHHHHHH
Confidence 000 1111 246789999999744 35567788999997666554 4433222222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCcccCCC
Q 012279 197 MKLAREV-D---PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~-d---~~~~rti~VltK~D~~~~~ 223 (467)
..+...+ . ..+.++++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 105 QRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 2233332 2 2468999999999997653
No 99
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.35 E-value=7.6e-12 Score=113.30 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=73.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|.+|+|||||+|+|++..+.+ ...+ |....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~-t~~~~--------------------------------------- 58 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNE-DMIP-TVGFN--------------------------------------- 58 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC-CCSEE---------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCC-CCcee---------------------------------------
Confidence 345689999999999999999999877521 1111 11000
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.. .+. .....+.|+||||... ...+...|++++|++|+++. ++..-.-..
T Consensus 59 -------------~~--~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D-~~~~~s~~~ 108 (188)
T 1zd9_A 59 -------------MR--KIT-KGNVTIKLWDIGGQPR-------------FRSMWERYCRGVSAIVYMVD-AADQEKIEA 108 (188)
T ss_dssp -------------EE--EEE-ETTEEEEEEEECCSHH-------------HHTTHHHHHTTCSEEEEEEE-TTCGGGHHH
T ss_pred -------------EE--EEE-eCCEEEEEEECCCCHh-------------HHHHHHHHHccCCEEEEEEE-CCCHHHHHH
Confidence 00 011 1245789999999643 45667889999997666654 433222222
Q ss_pred HHHHHHHh-C---CCCCceEEEeccCcccCC
Q 012279 196 AMKLAREV-D---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~~-d---~~~~rti~VltK~D~~~~ 222 (467)
.......+ . ..+.++++|+||+|+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 109 SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 22233322 2 257899999999999764
No 100
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.1e-12 Score=119.60 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+.+....+ +....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t-~~~~~---------------------------------------- 65 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT-LESTY---------------------------------------- 65 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-CCEEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCC-CCceE----------------------------------------
Confidence 4568999999999999999999998753221111 10000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-H
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~ 194 (467)
...+. .......+.|+||||... ..+...|++.+|++|+++...+.+ +.. .
T Consensus 66 ------------~~~~~-~~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 118 (196)
T 2atv_A 66 ------------RHQAT-IDDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVL 118 (196)
T ss_dssp ------------EEEEE-ETTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEE-ECCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHH
Confidence 00001 112235688999999764 244677888899766665543321 101 1
Q ss_pred HHHHHHHH-hCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLARE-VDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~-~d~~~~rti~VltK~D~~~~ 222 (467)
..+..+.. ....+.|+++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 11222222 33457899999999999764
No 101
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.34 E-value=4.4e-13 Score=122.86 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---HHHHHHhCC---CCCceEE
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MKLAREVDP---TGERTFG 212 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d~---~~~rti~ 212 (467)
...+.|+||||... ...+...|++++|++|+++. ++....-... +..+....+ .+.++++
T Consensus 72 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 137 (208)
T 2yc2_C 72 SVELFLLDTAGSDL-------------YKEQISQYWNGVYYAILVFD-VSSMESFESCKAWFELLKSARPDRERPLRAVL 137 (208)
T ss_dssp EEEEEEEETTTTHH-------------HHHHHSTTCCCCCEEEEEEE-TTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEE
T ss_pred EEEEEEEECCCcHH-------------HHHHHHHHHhhCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhhcccccCCcEEE
Confidence 35789999999743 46678889999997666654 4332211222 223333333 5789999
Q ss_pred EeccCcccC
Q 012279 213 VLTKLDLMD 221 (467)
Q Consensus 213 VltK~D~~~ 221 (467)
|+||+|+.+
T Consensus 138 v~nK~Dl~~ 146 (208)
T 2yc2_C 138 VANKTDLPP 146 (208)
T ss_dssp EEECC----
T ss_pred EEECcccch
Confidence 999999976
No 102
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.34 E-value=7.4e-12 Score=113.51 Aligned_cols=120 Identities=19% Similarity=0.331 Sum_probs=69.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...++|+|+|.+|+|||||+|+|++..+.+ ...+..|+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~--------------------------------------- 83 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPL--------------------------------------- 83 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCc---------------------------------------
Confidence 367899999999999999999999987522 11111110
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.+. ......+.++||||...... . +.......+..+|++|+++......-.-..
T Consensus 84 -----~~~------------~~~~~~~~l~Dt~G~~~~~~-----~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 137 (193)
T 2ged_A 84 -----SAA------------DYDGSGVTLVDFPGHVKLRY-----K----LSDYLKTRAKFVKGLIFMVDSTVDPKKLTT 137 (193)
T ss_dssp --------------------CCCCTTCSEEEETTCCBSSC-----C----HHHHHHHHGGGEEEEEEEEETTCCHHHHHH
T ss_pred -----eee------------eecCCeEEEEECCCCchHHH-----H----HHHHHHhhcccCCEEEEEEECCCCchhHHH
Confidence 000 00346889999999876421 1 233344455567866665543312111111
Q ss_pred HHHHHHHh-------CCCCCceEEEeccCcccCCC
Q 012279 196 AMKLAREV-------DPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~l~~~~-------d~~~~rti~VltK~D~~~~~ 223 (467)
.......+ .+.+.++++|+||+|+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 138 TAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 11112111 34578999999999998654
No 103
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.34 E-value=6.3e-13 Score=120.35 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+.+ ..|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------~~~t---------------------------------------- 53 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-------TVPT---------------------------------------- 53 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-------ECSS----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-------cCCC----------------------------------------
Confidence 46789999999999999999999876521 1110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.++... .+.+ +...+.++||||..+.. .+...|++++|++|+++. ++..-.-...
T Consensus 54 ------~~~~~~--~~~~---~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d-~~~~~s~~~~ 108 (189)
T 2x77_A 54 ------VGVNLE--TLQY---KNISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVD-STDRDRMGVA 108 (189)
T ss_dssp ------TTCCEE--EEEE---TTEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEE-TTCCTTHHHH
T ss_pred ------CceEEE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEe-CCCHHHHHHH
Confidence 001100 1111 24678999999986532 224567888997666554 4432112222
Q ss_pred HHHHHH-hC---CCCCceEEEeccCcccCC
Q 012279 197 MKLARE-VD---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~-~d---~~~~rti~VltK~D~~~~ 222 (467)
...... +. ..+.|+++|+||+|+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 109 KHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 222222 22 247899999999999765
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.33 E-value=3.6e-12 Score=117.77 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+|+|++++|||||+++|++..+.+.. .+.+. .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~-~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITD-S----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSC-E-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc-CCcce-e-----------------------------------------
Confidence 5679999999999999999999988752221 11110 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHH-HHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIES-MVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~-~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
...+.+.+.....+.|+||||..+ ... +...|++.++++|+++...+..-....
T Consensus 43 ------------~~~~~~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 43 ------------SAIYKVNNNRGNSLTLIDLPGHES-------------LRFQLLDRFKSSARAVVFVVDSAAFQREVKD 97 (214)
T ss_dssp ------------EEEEECSSTTCCEEEEEECCCCHH-------------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHH
T ss_pred ------------eEEEEecCCCccEEEEEECCCChh-------------HHHHHHHHHHhhCCEEEEEEECCCcCHHHHH
Confidence 001112222246789999999754 344 778899999976666544331101112
Q ss_pred HHHHHHH------hCCCCCceEEEeccCcccCCC
Q 012279 196 AMKLARE------VDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ~l~l~~~------~d~~~~rti~VltK~D~~~~~ 223 (467)
....... ....+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 2221111 234468999999999998654
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=7.4e-13 Score=118.94 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+.+.. |
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------~----------------------------------------- 48 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK-------P----------------------------------------- 48 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-------S-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC-------C-----------------------------------------
Confidence 4568999999999999999999987641100 1
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+.++... .+.+ +...+.++||||.... ..+...|++++|++|+++. ++....-...
T Consensus 49 -----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~ 104 (183)
T 1moz_A 49 -----TIGFNVE--TLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVD-STDKDRMSTA 104 (183)
T ss_dssp -----STTCCEE--EEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEE-TTCTTTHHHH
T ss_pred -----cCccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHH
Confidence 0001111 1111 2367899999998652 2235677888886666554 4433222333
Q ss_pred HHHHHHhC----CCCCceEEEeccCcccCC
Q 012279 197 MKLAREVD----PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d----~~~~rti~VltK~D~~~~ 222 (467)
......+. ..+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 105 SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 33334333 357899999999999764
No 106
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=117.65 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc-HHHHHHHHHhCC-CCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVDP-TGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~l~~~~d~-~~~rti~VltK 216 (467)
..+.++||||..... ..+...|++.++++|+++...+.. +.. ...+..++...+ .+.++++|.||
T Consensus 72 ~~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 467899999985421 235667888899766665443321 111 112222222222 47899999999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCcc
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~ 257 (467)
+|+.+......+.........+..|+.+++....+++..+.
T Consensus 140 ~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred hhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence 99976432211111101111234566666665555444333
No 107
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.32 E-value=7.8e-13 Score=123.43 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+.+......+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 49 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE------------------------------------------ 49 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCS------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce------------------------------------------
Confidence 45689999999999999999999987622111111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+. ...+.+ ......+.|+||||.... ..+...|++.+|++|+++ +++........
T Consensus 50 --------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~-D~~~~~s~~~~ 104 (223)
T 3cpj_B 50 --------FA--TRTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVY-DISKSSSYENC 104 (223)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEE-C-CCHHHHHHH
T ss_pred --------eE--EEEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEE-eCCCHHHHHHH
Confidence 00 001111 111247899999996542 334667888999666555 44432222222
Q ss_pred ---HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 ---MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 ---l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+..+......+.++++|+||+|+.+.
T Consensus 105 ~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 105 NHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp HHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred HHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 23334444557899999999999754
No 108
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.32 E-value=1.5e-12 Score=118.58 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+ +.. ..|...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~~--~~t~~~----------------------------------------- 63 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGF----------------------------------------- 63 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EEE--EEETTE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-ccc--CCcCce-----------------------------------------
Confidence 456899999999999999999998775 210 111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
... .+.. ....+.++||||... ...+...|++++|++|+++. ++....-...
T Consensus 64 ---------~~~----~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D-~~~~~s~~~~ 115 (192)
T 2b6h_A 64 ---------NVE----TVEY-KNICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVD-SNDRERVQES 115 (192)
T ss_dssp ---------EEE----EEEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEE-TTCGGGHHHH
T ss_pred ---------eEE----EEEE-CCEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEE-CCCHHHHHHH
Confidence 000 0111 346789999999854 23456778899997666554 4432222222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCcccCC
Q 012279 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~-d---~~~~rti~VltK~D~~~~ 222 (467)
......+ . ..+.++++|+||+|+.+.
T Consensus 116 ~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 116 ADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 2333332 2 236899999999999764
No 109
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.31 E-value=8.7e-14 Score=127.44 Aligned_cols=120 Identities=14% Similarity=0.184 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+........|....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 71 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 71 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE----------------------------------------
Confidence 4568999999999999999999998752221111111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
...+.+ ......+.|+||||.... ..+...|++++|++|+++ +++....-...
T Consensus 72 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~ 124 (199)
T 3l0i_B 72 ------------IRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVY-DVTDQESFNNV 124 (199)
T ss_dssp ------------EEEEEE-TTEEEEEEEECCTTCTTC-------------CCCSCC--CCCSEEEECC--CCCSHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHhH-------------HHHHHHHhhcCCEEEEEE-ECCCHHHHHHH
Confidence 001111 112247899999996542 223456788899665554 44432222222
Q ss_pred HHH---HHHhCCCCCceEEEeccCcccCCC
Q 012279 197 MKL---AREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l---~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
..+ +....+.+.++++|+||+|+.+..
T Consensus 125 ~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 125 KQWLQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp HHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred HHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence 223 333334478999999999997543
No 110
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.31 E-value=5.3e-12 Score=121.62 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--------------------------------------- 78 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--------------------------------------- 78 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE---------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE---------------------------------------
Confidence 457899999999999999999999886443321 2222221
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhh--cCCCeEEEEEecCCccccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIAT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi--~~~~~iIL~V~~a~~d~~~ 193 (467)
...+. .....++||||||+.+... ..+...+.+..|+ ..+|++++++......+ .
T Consensus 79 ---------------~~~~~-~~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~-~ 135 (270)
T 1h65_A 79 ---------------MVSRS-RAGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRV-D 135 (270)
T ss_dssp ---------------EEEEE-ETTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCC-C
T ss_pred ---------------EEEEe-eCCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC-C
Confidence 11111 2235799999999976321 1122333445564 35676555543222233 2
Q ss_pred HHHHHHHHHhC---CC--CCceEEEeccCcccCCC
Q 012279 194 SDAMKLAREVD---PT--GERTFGVLTKLDLMDKG 223 (467)
Q Consensus 194 ~~~l~l~~~~d---~~--~~rti~VltK~D~~~~~ 223 (467)
.....+.+.+. .. ..++++|+||+|+.++.
T Consensus 136 ~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 136 NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 22223333332 21 25899999999987654
No 111
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.31 E-value=5.2e-12 Score=113.83 Aligned_cols=115 Identities=20% Similarity=0.291 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+++|++|+|||||+++|++..+ + . ..|+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~----~--~~~t---------------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-S----H--ITPT---------------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-E----E--EEEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-C----c--ccCc----------------------------------------
Confidence 567899999999999999999999864 1 0 0111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.| +... .+.+ +...+.++||||... +..+...|++.+|++|+++...+. ..-...
T Consensus 48 --~g----~~~~--~~~~---~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~ 102 (181)
T 1fzq_A 48 --QG----FNIK--SVQS---QGFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSADR-KRFEET 102 (181)
T ss_dssp --TT----EEEE--EEEE---TTEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTCG-GGHHHH
T ss_pred --CC----eEEE--EEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcCH-HHHHHH
Confidence 00 0000 1111 145789999999754 356678899999977666554332 112222
Q ss_pred HHHHHHh-C---CCCCceEEEeccCcccCCC
Q 012279 197 MKLAREV-D---PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 197 l~l~~~~-d---~~~~rti~VltK~D~~~~~ 223 (467)
......+ . ..+.|+++|+||+|+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 2233332 2 2468999999999997653
No 112
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=117.96 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|++++|||||+|+|++..+ +....+.+.....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 59 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYS---------------------------------------- 59 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE----------------------------------------
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceee----------------------------------------
Confidence 34799999999999999999998875 2222111111100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
..+.+ ......+.|+||||..... .+ ..|++.+|++|+++...+.. .-....
T Consensus 60 ------------~~~~~-~~~~~~l~i~Dt~G~~~~~-------------~~-~~~~~~~~~~ilv~d~~~~~-s~~~~~ 111 (187)
T 3c5c_A 60 ------------SEETV-DHQPVHLRVMDTADLDTPR-------------NC-ERYLNWAHAFLVVYSVDSRQ-SFDSSS 111 (187)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC---CC-------------CT-HHHHTTCSEEEEEEETTCHH-HHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCCcch-------------hH-HHHHhhCCEEEEEEECCCHH-HHHHHH
Confidence 00111 1223578899999975421 11 35888999776665543321 112222
Q ss_pred HHHHHhC------CCCCceEEEeccCcccCC
Q 012279 198 KLAREVD------PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 198 ~l~~~~d------~~~~rti~VltK~D~~~~ 222 (467)
.+...+. ..+.++++|.||+|+.+.
T Consensus 112 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 112 SYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 2222221 247899999999999753
No 113
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.31 E-value=3.9e-12 Score=129.95 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=90.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCccccc-ccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
...+.|+|+|..|+|||||+|+|+|.++.+.+.. .+|..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~--------------------------------------- 72 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDP--------------------------------------- 72 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCC---------------------------------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeee---------------------------------------
Confidence 3567899999999999999999999876222111 111111
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
....+.......+.||||||+.+...-++ .. .+.+..|+.++|.+|+++ ++.. ..
T Consensus 73 ---------------~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~~-----~~~~~~~l~~aD~vllVv-D~~~---~~ 127 (423)
T 3qq5_A 73 ---------------VYKSMELHPIGPVTLVDTPGLDDVGELGR-LR-----VEKARRVFYRADCGILVT-DSAP---TP 127 (423)
T ss_dssp ---------------CEEEEEETTTEEEEEEECSSTTCCCTTCC-CC-----HHHHHHHHTSCSEEEEEC-SSSC---CH
T ss_pred ---------------EEEEEEECCCCeEEEEECcCCCcccchhH-HH-----HHHHHHHHhcCCEEEEEE-eCCC---hH
Confidence 11112222223789999999986432211 11 233677888999665555 5532 22
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
....+...+...+.++++|+||+|+.+.... +.........+..++.+++..+.+++..+..+..
T Consensus 128 ~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 128 YEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 2333444454457899999999999876543 2221112223345666666666665555554443
No 114
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=118.42 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=67.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|.+++|||||+|+|++..+ +....+++......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~------------------------------------- 59 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA------------------------------------- 59 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE-------------------------------------
Confidence 4567899999999999999999999874 32222222111100
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.+.+ ......+.|+||||.... ..+...|+.++|++|+++...+. ..-..
T Consensus 60 ---------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~ 109 (201)
T 2q3h_A 60 ---------------VVSV-DGRPVRLQLCDTAGQDEF-------------DKLRPLCYTNTDIFLLCFSVVSP-SSFQN 109 (201)
T ss_dssp ---------------EEEE-TTEEEEEEEEECCCSTTC-------------SSSGGGGGTTCSEEEEEEETTCH-HHHHH
T ss_pred ---------------EEEE-CCEEEEEEEEECCCCHHH-------------HHHhHhhcCCCcEEEEEEECCCH-HHHHH
Confidence 0111 111246789999998653 22355688899976666544332 11122
Q ss_pred ----HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 ----AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ----~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++...+ +.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 110 VSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 1222333333 7899999999999753
No 115
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.31 E-value=1.1e-12 Score=119.41 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+ +....+.+......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 62 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------------------------------- 62 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE--------------------------------------
Confidence 446899999999999999999999875 32222211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
.+ ........+.|+||||... ...+...|++++|++|+++. ++....-..
T Consensus 63 --------------~~-~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 113 (194)
T 3reg_A 63 --------------VM-KYKNEEFILHLWDTAGQEE-------------YDRLRPLSYADSDVVLLCFA-VNNRTSFDNI 113 (194)
T ss_dssp --------------EE-EETTEEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEE-TTCHHHHHHH
T ss_pred --------------EE-EECCEEEEEEEEECCCcHH-------------HHHHhHhhccCCcEEEEEEE-CCCHHHHHHH
Confidence 00 1112234679999999644 23456778899997666654 433211111
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++... .+.++++|+||+|+.+.
T Consensus 114 ~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 114 STKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HHTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 222333332 36899999999999864
No 116
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.30 E-value=8.8e-12 Score=119.58 Aligned_cols=124 Identities=18% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccc-cccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...+|+++|..|+|||||+|+|+|..+...+. ..+|..+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 76 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM-------------------------------------- 76 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEE--------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEE--------------------------------------
Confidence 45689999999999999999999987532222 112222211
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCc-ccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQ-DIA 192 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~-d~~ 192 (467)
..+. .+...++||||||+.+... ..+...+.+.+++. .++++ ++|.+.+. .+.
T Consensus 77 ----------------~~~~-~~~~~l~liDTpG~~~~~~------~~~~~~~~i~~~l~~~~~~~i-l~V~~~d~~~~~ 132 (262)
T 3def_A 77 ----------------VSRT-MGGFTINIIDTPGLVEAGY------VNHQALELIKGFLVNRTIDVL-LYVDRLDVYAVD 132 (262)
T ss_dssp ----------------EEEE-ETTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEE-EEEEESSCSCCC
T ss_pred ----------------EEEE-ECCeeEEEEECCCCCCccc------chHHHHHHHHHHHhcCCCCEE-EEEEcCCCCCCC
Confidence 1111 1234899999999976431 12334445556654 44644 44543332 332
Q ss_pred cH--HHHHHHHHhCCC--CCceEEEeccCcccCC
Q 012279 193 TS--DAMKLAREVDPT--GERTFGVLTKLDLMDK 222 (467)
Q Consensus 193 ~~--~~l~l~~~~d~~--~~rti~VltK~D~~~~ 222 (467)
.. ..++.++..... ..++++|+||+|+.+.
T Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 133 ELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 22 234444433222 2489999999998754
No 117
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=2.1e-12 Score=117.49 Aligned_cols=119 Identities=21% Similarity=0.182 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+.+.. . .|.... ..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~-~t~~~~---~~----------------------------------- 46 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY-I-PTIEDT---YR----------------------------------- 46 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTT-S-CCCCEE---EE-----------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcc-c-Cccccc---ee-----------------------------------
Confidence 4568999999999999999999987652211 1 110000 00
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~ 194 (467)
..+ ........+.|+||||... ...+...|+..+|++|+++...+.. +. ..
T Consensus 47 -------------~~~-~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (199)
T 2gf0_A 47 -------------QVI-SCDKSVCTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVFSVTSKQSLEELG 99 (199)
T ss_dssp -------------EEE-EETTEEEEEEEEECCGGGS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTH
T ss_pred -------------EEE-EECCEEEEEEEEeCCChHH-------------hHHHHHHhhccCCEEEEEEECcCHHHHHHHH
Confidence 000 0111234689999999654 2466778888999766665543321 11 11
Q ss_pred HHHHHHHHhCC--CCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDP--TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~--~~~rti~VltK~D~~~~ 222 (467)
..+..+..+.. .+.++++|+||+|+.+.
T Consensus 100 ~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 100 PIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 12333333322 36789999999999864
No 118
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.30 E-value=2.8e-12 Score=116.29 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHH----HHHHHHh--CCCCCceE
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDA----MKLAREV--DPTGERTF 211 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~----l~l~~~~--d~~~~rti 211 (467)
..+.|+||||... +..+...|++++|++|+++... .... +.+. ..+..++ ...+.|++
T Consensus 74 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~-~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii 139 (198)
T 3t1o_A 74 TRFHLYTVPGQVF-------------YNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYGLTLDDVPIV 139 (198)
T ss_dssp EEEEEEECCSCCS-------------CSHHHHHHTTTCCEEEEEEECC-GGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE
T ss_pred eEEEEEeCCChHH-------------HHHHHHHHHhcCCEEEEEEECC-cchhhHhHHHHHHHHHHHHhhccccCCCCEE
Confidence 4689999999764 2456778999999766665443 2110 1111 2233333 23578999
Q ss_pred EEeccCcccCC
Q 012279 212 GVLTKLDLMDK 222 (467)
Q Consensus 212 ~VltK~D~~~~ 222 (467)
+|+||+|+.+.
T Consensus 140 lv~NK~Dl~~~ 150 (198)
T 3t1o_A 140 IQVNKRDLPDA 150 (198)
T ss_dssp EEEECTTSTTC
T ss_pred EEEEchhcccc
Confidence 99999999764
No 119
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.29 E-value=1.4e-12 Score=117.37 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=72.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+|+|.+|+|||||+|+|++..+ . . ..|+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~----~--~~~t--------------------------------------- 52 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-V----H--TSPT--------------------------------------- 52 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-E----E--EECC---------------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-C----c--cCCc---------------------------------------
Confidence 3556899999999999999999999875 1 0 0010
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~ 195 (467)
.++... .+.+ +...+.|+||||..+. ..+...|++++|++|+++. ++....-..
T Consensus 53 -------~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D-~~~~~s~~~ 106 (181)
T 2h17_A 53 -------IGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVD-STDRERISV 106 (181)
T ss_dssp -------SSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEE-TTCTTTHHH
T ss_pred -------CceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHH
Confidence 011111 1122 2368899999998552 3346788999997666554 443322233
Q ss_pred HHHHHHH-hC---CCCCceEEEeccCcccCC
Q 012279 196 AMKLARE-VD---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ~l~l~~~-~d---~~~~rti~VltK~D~~~~ 222 (467)
....... +. ..+.++++|+||+|+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 107 TREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 3333333 22 357899999999999764
No 120
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=1.8e-12 Score=117.86 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+++|++..+ +....+++....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 55 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHY---------------------------------------- 55 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCE----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccccee----------------------------------------
Confidence 345899999999999999999998865 322222111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~- 194 (467)
...+.+ ......+.|+||||..+. ..+...|++++|++|+++...+.. +...
T Consensus 56 ------------~~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (194)
T 2atx_A 56 ------------AVSVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVK 109 (194)
T ss_dssp ------------EEEEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHH
Confidence 001111 112247889999997652 234667889999766665443321 1111
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+..++...+ +.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 110 EEWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HTHHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 12233333333 6899999999999864
No 121
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.29 E-value=1.1e-12 Score=117.94 Aligned_cols=117 Identities=21% Similarity=0.165 Sum_probs=70.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|.+|+|||||+++|++..+.+ .....+.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~---------------------------------------- 43 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYS---------------------------------------- 43 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS-SCCCCSCCEEE----------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCcccceeE----------------------------------------
Confidence 3589999999999999999999876522 21111111000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-- 194 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-- 194 (467)
..+.+ ......+.|+||||.... ..+...|++.+|++|+++...+.. +...
T Consensus 44 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 44 ------------ANVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRA 97 (186)
T ss_dssp ------------EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence 00111 112346789999998652 344566888999766665543321 1111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+..++...+ +.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 98 KWYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp THHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEeEccccccc
Confidence 12233344434 7899999999999864
No 122
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.28 E-value=1.3e-11 Score=123.91 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=71.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...+.|+++|.+|+|||||+|+|+|..+...+....|..+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~-------------------------------------- 206 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINV-------------------------------------- 206 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeE--------------------------------------
Confidence 367899999999999999999999986311111122222110
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc--ccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT 193 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d--~~~ 193 (467)
..+.. ....+.++||||+....... .+..+ ...+..+...+|.+++++ +++.. +..
T Consensus 207 ----------------~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~--~~~~~~~~~~ad~illV~-D~s~~~~~~~ 264 (357)
T 2e87_A 207 ----------------GQFED-GYFRYQIIDTPGLLDRPISE--RNEIE--KQAILALRYLGNLIIYIF-DPSEHCGFPL 264 (357)
T ss_dssp ----------------EEEEE-TTEEEEEEECTTTSSSCSTT--SCHHH--HHHHHGGGGTCSEEEEEE-CTTCTTSSCH
T ss_pred ----------------EEEEe-cCceEEEEeCCCccccchhh--hhHHH--HHHHHHHHhcCCEEEEEE-eCCccccCCH
Confidence 01111 23468999999997643211 11111 223334555678655554 44331 112
Q ss_pred HHHHHH---HHHhCCCCCceEEEeccCcccCC
Q 012279 194 SDAMKL---AREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 194 ~~~l~l---~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.....+ +....+ +.++++|+||+|+.+.
T Consensus 265 ~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 265 EEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 222223 333323 7899999999999764
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=1.1e-12 Score=120.83 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=68.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|.+|+|||||+|+|++..+ +....+.+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~----------------------------------------- 62 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFENY----------------------------------------- 62 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-C-------CCEE-----------------------------------------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccceE-----------------------------------------
Confidence 35899999999999999999999875 211111110000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--H
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~ 194 (467)
...+.+ ......+.|+||||.... ..+...|++++|++|+++...+.. +.. .
T Consensus 63 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (207)
T 2fv8_A 63 -----------VADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117 (207)
T ss_dssp -----------EEEEEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 000111 112247899999997552 234566888999766665443321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+..++...+ +.++++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 118 KWVPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp THHHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 12233333332 6899999999999764
No 124
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.28 E-value=1.3e-12 Score=119.82 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|.+|+|||||+|+|++..+ +....+.+...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 61 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFEN----------------------------------------- 61 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCC-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccce-----------------------------------------
Confidence 345899999999999999999999875 22211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-ccc--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~-- 193 (467)
+. ..+.+ ......+.|+||||.... ..+...|++++|++|+++...+.. +..
T Consensus 62 --------~~---~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 116 (201)
T 2gco_A 62 --------YI---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIP 116 (201)
T ss_dssp --------CE---EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------EE---EEEEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHH
Confidence 00 01111 112247899999996542 334556889999766655433321 111
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 194 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
...+..++...+ +.++++|+||+|+.+.
T Consensus 117 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 117 EKWTPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp HTHHHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 112233344333 6899999999999865
No 125
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.28 E-value=1.4e-11 Score=112.41 Aligned_cols=120 Identities=19% Similarity=0.190 Sum_probs=74.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|+++|+.++|||||++.++|.. .+.. |.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~~----~~------------------------------------------ 50 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKM-SPNE----TL------------------------------------------ 50 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCC-CGGG----GG------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcC-CCcc----ee------------------------------------------
Confidence 356799999999999999999999863 2211 10
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHH---HHhhcCCCeEEEEEecCCccc-
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV---RSYVEKPNSVILAISPANQDI- 191 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~---~~yi~~~~~iIL~V~~a~~d~- 191 (467)
+..+....+...+.+.....+.|+||||..+. ..+. ..|+++++++|+++. ++...
T Consensus 51 ------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~i~v~d-~~~~~~ 110 (196)
T 3llu_A 51 ------FLESTNKIYKDDISNSSFVNFQIWDFPGQMDF-------------FDPTFDYEMIFRGTGALIYVID-AQDDYM 110 (196)
T ss_dssp ------GCCCCCSCEEEEECCTTSCCEEEEECCSSCCT-------------TCTTCCHHHHHHTCSEEEEEEE-TTSCCH
T ss_pred ------eeccccceeeeeccCCCeeEEEEEECCCCHHH-------------HhhhhhcccccccCCEEEEEEE-CCCchH
Confidence 01122223333344445578999999997552 1223 678889997766655 44331
Q ss_pred -ccHHHHHHHHHh--CCCCCceEEEeccCcccCC
Q 012279 192 -ATSDAMKLAREV--DPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 192 -~~~~~l~l~~~~--d~~~~rti~VltK~D~~~~ 222 (467)
.......+...+ ...+.++++|.||+|+.+.
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 111 EALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 111222333433 2347899999999998763
No 126
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=119.38 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=57.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|+|+|++|+|||||+|+|++..+ +....+.+....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~----------------------------------------- 71 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERY----------------------------------------- 71 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEE-----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeE-----------------------------------------
Confidence 35899999999999999999999775 322211111000
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH--
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-- 195 (467)
...+.+ ......+.|+||||... ...+...|++.+|++|+++. ++....-..
T Consensus 72 -----------~~~~~~-~~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~ 125 (214)
T 2j1l_A 72 -----------MVNLQV-KGKPVHLHIWDTAGQDD-------------YDRLRPLFYPDASVLLLCFD-VTSPNSFDNIF 125 (214)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEC----------------------------CEEEEEEEEE-TTCHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCchh-------------hhHHHHHHhccCCEEEEEEE-CcCHHHHHHHH
Confidence 000111 11224688999999654 34566778899997666654 433211111
Q ss_pred --HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 --AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 --~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++... .+.++++|+||+|+.+.
T Consensus 126 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 126 NRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 122233333 36899999999999865
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.27 E-value=5.5e-13 Score=132.74 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=85.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
+|.|++||.+|||||||+|+|++......+...+|..|..-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--------------------------------------- 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--------------------------------------- 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE---------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE---------------------------------------
Confidence 68899999999999999999998763222222233333100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---cccccH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---QDIATS 194 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~---~d~~~~ 194 (467)
.+..++...++|+||||+...+... ..+ .....++++.++.+|+++...+ .+. ..
T Consensus 199 ---------------~v~~~~~~~~~l~DtPG~i~~a~~~--~~l----~~~fl~~i~~~d~ll~VvD~s~~~~~~~-~~ 256 (342)
T 1lnz_A 199 ---------------MVETDDGRSFVMADLPGLIEGAHQG--VGL----GHQFLRHIERTRVIVHVIDMSGLEGRDP-YD 256 (342)
T ss_dssp ---------------EEECSSSCEEEEEEHHHHHHHTTCT--TTT----HHHHHHHHHHCCEEEEEEESSCSSCCCH-HH
T ss_pred ---------------EEEeCCCceEEEecCCCCccccccc--chh----HHHHHHHHHhccEEEEEEECCcccccCh-HH
Confidence 1222233579999999987533211 111 1223445666886666655443 221 12
Q ss_pred HH---HHHHHHhCC--CCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccH
Q 012279 195 DA---MKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (467)
Q Consensus 195 ~~---l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~ 258 (467)
+. +..+..+.+ ...|.++|+||+|+.+......++.. .+.....++.+++.+..+++.....
T Consensus 257 ~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~--~l~~~~~v~~iSA~tg~gi~eL~~~ 323 (342)
T 1lnz_A 257 DYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKE--KLTDDYPVFPISAVTREGLRELLFE 323 (342)
T ss_dssp HHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHH--HCCSCCCBCCCSSCCSSTTHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHH--HhhcCCCEEEEECCCCcCHHHHHHH
Confidence 22 223334443 36899999999999864322222211 1111134555555555554443333
No 128
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=3.7e-12 Score=114.89 Aligned_cols=119 Identities=24% Similarity=0.340 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..++|+++|++|+|||||+|+|+|..+.+.....+|..+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~---------------------------------------- 45 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK---------------------------------------- 45 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEE----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccce----------------------------------------
Confidence 3468999999999999999999997642211111121111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~ 194 (467)
...+.. +...+.++||||...... ... -+.+...|+. .++.+++ |.++.. ..
T Consensus 46 --------------~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~---~~~~~~~~~~~~~~~~~i~-v~d~~~---~~ 99 (188)
T 2wjg_A 46 --------------EGEFEY-NGEKFKVVDLPGVYSLTA----NSI---DEIIARDYIINEKPDLVVN-IVDATA---LE 99 (188)
T ss_dssp --------------EEEEEE-TTEEEEEEECCCCSCCSS----SSH---HHHHHHHHHHHHCCSEEEE-EEEGGG---HH
T ss_pred --------------EEEEEe-CCcEEEEEECCCcCcccc----ccH---HHHHHHHHHhccCCCEEEE-Eecchh---HH
Confidence 001111 235789999999876421 111 1344566664 4775544 444442 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
....+...+...+.++++|+||+|+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 233455555556789999999999864
No 129
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.25 E-value=1e-11 Score=115.69 Aligned_cols=150 Identities=18% Similarity=0.274 Sum_probs=84.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|+.++|||||++.+++..| +... .||.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f-~~~~-----~~Ti------------------------------------------ 46 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF-DNTY-----QATI------------------------------------------ 46 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-C------------------------------------------------------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC-CCCc-----CCcc------------------------------------------
Confidence 799999999999999999998775 2211 1110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cc-cHHHH
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l 197 (467)
| ..+. ...+ ........+.|+||+|..+ ...+...|++.++++|++....+.. +. ....+
T Consensus 47 g--~d~~--~k~~-~~~~~~v~l~iwDtaGqe~-------------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~ 108 (216)
T 4dkx_A 47 G--IDFL--SKTM-YLEDRTIRLQLWDTAGLER-------------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWI 108 (216)
T ss_dssp -----CE--EEEE-ECSSCEEEEEEECCSCTTT-------------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred c--eEEE--EEEE-EecceEEEEEEEECCCchh-------------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHH
Confidence 0 0000 0011 1122335788999999755 3566888999999777666543321 11 11223
Q ss_pred HHHHHhCCCCCceEEEeccCcccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccC
Q 012279 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (467)
Q Consensus 198 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~ 255 (467)
..++...+...++++|.||+|+.+......+.........+..|+.+++.++.+++..
T Consensus 109 ~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 109 DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp HHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred HHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHH
Confidence 3344444456899999999998764432111111111223345666666666554433
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.25 E-value=1.4e-12 Score=116.83 Aligned_cols=117 Identities=24% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||++++++..+ +....+++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~----------------------------------------- 44 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDN----------------------------------------- 44 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeee-----------------------------------------
Confidence 456899999999999999999998764 22211111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
+... +.+ ......+.|+||||.... ..+...|++++|++|+++...+.. .-..
T Consensus 45 --------~~~~---~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 98 (182)
T 3bwd_D 45 --------FSAN---VVV-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKA-SYENV 98 (182)
T ss_dssp --------CBCC---CC--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHH-HHHHH
T ss_pred --------EEEE---EEE-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHH-HHHHH
Confidence 0000 001 112356889999997542 344667889999766665443321 1111
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++...+ +.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 99 SKKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp HHTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 2233344333 7899999999998764
No 131
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.24 E-value=6.8e-12 Score=123.26 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH---HHHHHHhC--CCCCceEEE
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MKLAREVD--PTGERTFGV 213 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d--~~~~rti~V 213 (467)
...+.++||||..+. .......+...|++++|++|+++...+. ..-... ......+. ..+.|+++|
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~-~s~~~l~~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVEST-EVLKDIEIFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCS-CHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCCh-hhHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 468899999997541 1112246688889999976666544332 211211 11222221 236899999
Q ss_pred eccCcccC
Q 012279 214 LTKLDLMD 221 (467)
Q Consensus 214 ltK~D~~~ 221 (467)
+||+|+.+
T Consensus 122 ~NK~Dl~~ 129 (307)
T 3r7w_A 122 LHKMDLVQ 129 (307)
T ss_dssp EECGGGSC
T ss_pred Eecccccc
Confidence 99999986
No 132
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.24 E-value=1.4e-12 Score=120.45 Aligned_cols=117 Identities=22% Similarity=0.247 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+++|++..+ +....+.+....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 46 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF---------------------------------------- 46 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCE----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeE----------------------------------------
Confidence 346899999999999999999998775 322211111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
...+.+ ......+.|+||||.... ..+...|++++|++|+++...+.. .-..
T Consensus 47 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~ 99 (212)
T 2j0v_A 47 ------------SANVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISKA-SYENV 99 (212)
T ss_dssp ------------EEEEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCHH-HHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCHH-HHHHH
Confidence 001111 122357899999998652 234566889999766665443321 1111
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++...+ +.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 100 LKKWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HHTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 2233334333 6899999999998764
No 133
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.24 E-value=1.5e-12 Score=121.17 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH---HHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 216 (467)
..+.|+||||.... ..+...|++++|++|+++. ++....-. ..+..+.... .+.++++|+||
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 128 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 128 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEEC
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 57899999996542 3345678889997666654 43321111 1222333332 26899999999
Q ss_pred CcccCCC
Q 012279 217 LDLMDKG 223 (467)
Q Consensus 217 ~D~~~~~ 223 (467)
+|+.+..
T Consensus 129 ~Dl~~~~ 135 (221)
T 3gj0_A 129 VDIKDRK 135 (221)
T ss_dssp TTSSSCS
T ss_pred Ccccccc
Confidence 9997643
No 134
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.24 E-value=9.6e-12 Score=113.06 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+..+|+++|++|+|||||+++|++..+-.. ..|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~---~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL---QPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC---CCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc---ccCCCCC----------------------------------------
Confidence 456899999999999999999998775110 1111110
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.-.+.+ +...+.++||||.... +.+...|++++|++|+++. ++..-.-...
T Consensus 59 ------------~~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 109 (190)
T 1m2o_B 59 ------------SEELAI---GNIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVD-AADPERFDEA 109 (190)
T ss_dssp ------------EEEEEE---TTEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEE-TTCGGGHHHH
T ss_pred ------------eEEEEE---CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEE-CCChHHHHHH
Confidence 001111 1267899999998652 3345678889997666654 4432222222
Q ss_pred HHHHHHh----CCCCCceEEEeccCcccC
Q 012279 197 MKLAREV----DPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~l~~~~----d~~~~rti~VltK~D~~~ 221 (467)
......+ ...+.|+++|+||+|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 2222222 235789999999999976
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.24 E-value=6.6e-11 Score=122.00 Aligned_cols=128 Identities=23% Similarity=0.327 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCccc-ccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
..++|+++|++|+|||||+|+|+|......+ ...+|+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~--------------------------------------- 219 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV--------------------------------------- 219 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C---------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce---------------------------------------
Confidence 4679999999999999999999998652111 111222221
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHH-HHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI-ESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i-~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
. ..+.+ +..++.++||||+.+..... ++.. +.. ..-+..+++.+|.++++ .++......+
T Consensus 220 -----------~--~~i~~---~g~~~~l~Dt~G~~~~~~~~-~~~~-e~~~~~~~~~~i~~ad~vllv-~d~~~~~~~~ 280 (439)
T 1mky_A 220 -----------D--DEVFI---DGRKYVFVDTAGLRRKSRVE-PRTV-EKYSNYRVVDSIEKADVVVIV-LDATQGITRQ 280 (439)
T ss_dssp -----------C--EEEEE---TTEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEE-EETTTCCCHH
T ss_pred -----------E--EEEEE---CCEEEEEEECCCCccccccc-hhhH-HHHHHHHHHHHHhhCCEEEEE-EeCCCCCCHH
Confidence 0 01112 12468899999985422110 0000 000 01235678888865554 4555444333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
...++..+...+.++++|+||+|+.+..
T Consensus 281 -~~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 281 -DQRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred -HHHHHHHHHHcCCCEEEEEECccCCCch
Confidence 3445555556689999999999998654
No 136
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.24 E-value=1.5e-11 Score=109.78 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
..+|+|+|++|+|||||+|++++..+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 35799999999999999999999876
No 137
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.24 E-value=9.8e-12 Score=124.76 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=78.4
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHH
Q 012279 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 35 ~~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (467)
..-.++|++||.||+|||||+|+|+|..........||+.|..-.+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~---------------------------------- 114 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVI---------------------------------- 114 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEE----------------------------------
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEE----------------------------------
Confidence 3456799999999999999999999988656666678887742111
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
......+.|+||||+...+..+ .. .-+.+...++++| +|+.|++++......
T Consensus 115 ---------------------~~~~~~i~l~D~pGl~~~a~~~--~~----~g~~~l~~i~~ad-~il~vvD~~~p~~~~ 166 (376)
T 4a9a_A 115 ---------------------RYKGAKIQMLDLPGIIDGAKDG--RG----RGKQVIAVARTCN-LLFIILDVNKPLHHK 166 (376)
T ss_dssp ---------------------EETTEEEEEEECGGGCCC-------C----HHHHHHHHHHHCS-EEEEEEETTSHHHHH
T ss_pred ---------------------EeCCcEEEEEeCCCccCCchhh--hH----HHHHHHHHHHhcC-ccccccccCccHHHH
Confidence 1123578999999998754321 11 2344556678899 555666666543222
Q ss_pred HHHH-HHHHhCC--CCCceEEEeccCccc
Q 012279 195 DAMK-LAREVDP--TGERTFGVLTKLDLM 220 (467)
Q Consensus 195 ~~l~-l~~~~d~--~~~rti~VltK~D~~ 220 (467)
+.+. -+..++. ...|.++|+||.|.-
T Consensus 167 ~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 167 QIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 2211 1122221 246788999999963
No 138
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.24 E-value=8.8e-12 Score=114.14 Aligned_cols=113 Identities=15% Similarity=0.239 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+++|++|+|||||+++|++..+ +. -..|..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~~~----------------------------------------- 59 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTLHP----------------------------------------- 59 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC-----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCCCc-----------------------------------------
Confidence 456899999999999999999998765 21 0011100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
.. -.+.+. ...+.++||||... .+.+...|++.+|++|+++...+.+ .-...
T Consensus 60 ---------~~--~~~~~~---~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~-s~~~~ 111 (198)
T 1f6b_A 60 ---------TS--EELTIA---GMTFTTFDLGGHIQ-------------ARRVWKNYLPAINGIVFLVDCADHE-RLLES 111 (198)
T ss_dssp ---------SC--EEEEET---TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGG-GHHHH
T ss_pred ---------ee--EEEEEC---CEEEEEEECCCcHh-------------hHHHHHHHHhcCCEEEEEEECCCHH-HHHHH
Confidence 00 111221 26789999999654 2335667899999766665543322 12222
Q ss_pred HHHHHHh----CCCCCceEEEeccCcccC
Q 012279 197 MKLAREV----DPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 l~l~~~~----d~~~~rti~VltK~D~~~ 221 (467)
......+ ...+.|+++|+||+|+.+
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2222222 235789999999999975
No 139
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.23 E-value=3.9e-12 Score=118.10 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+++|++..+. ....+.+.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~--------------------------------------- 65 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYT--------------------------------------- 65 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEE---------------------------------------
Confidence 4568999999999999999999988752 221111110000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH--
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-- 194 (467)
..+.+ ......+.|+||||.... ..+...|++++|++|+++...+. ..-.
T Consensus 66 -------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 117 (214)
T 3q3j_B 66 -------------ACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRP-ETVDSA 117 (214)
T ss_dssp -------------EEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCT-HHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCH-HHHHHH
Confidence 00111 112347889999997542 34566789999977666654432 1111
Q ss_pred --HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 --DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 --~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+..++...+ +.++++|.||+|+.+.
T Consensus 118 ~~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 118 LKKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp HTHHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 22333444433 6899999999999753
No 140
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.88 E-value=7.9e-13 Score=121.41 Aligned_cols=118 Identities=22% Similarity=0.201 Sum_probs=70.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+..+|+|+|.+|+|||||+++|++..+ +......+....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 67 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNY---------------------------------------- 67 (204)
Confidence 456899999999999999999998765 211111110000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
. ..+.+ ......+.|+||||... ...+...|++++|++|+++. ++....-...
T Consensus 68 ---~---------~~~~~-~~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D-~~~~~s~~~~ 120 (204)
T 3th5_A 68 ---S---------ANVMV-DGKPVNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFS-LVSPASFENV 120 (204)
Confidence 0 00001 11234677999999754 34567778899997666554 3322112222
Q ss_pred H-HHHHHhCCC--CCceEEEeccCcccCC
Q 012279 197 M-KLAREVDPT--GERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l-~l~~~~d~~--~~rti~VltK~D~~~~ 222 (467)
. .+...+... +.++++|+||+|+.+.
T Consensus 121 ~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 121 RAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 1 233333322 6899999999999764
No 141
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.23 E-value=2.2e-12 Score=118.73 Aligned_cols=118 Identities=20% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+..+|+|+|.+|+|||||++++++..+... ....+......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~-------------------------------------- 69 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSA-------------------------------------- 69 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCSEEEEEE--------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cCCeecceeEE--------------------------------------
Confidence 456899999999999999999998765221 11111111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
.+. .......+.|+||||.... ..+...|++++|++|+++...+. ..-..
T Consensus 70 --------------~~~-~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~ 120 (204)
T 4gzl_A 70 --------------NVM-VDGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSP-ASFENV 120 (204)
T ss_dssp --------------EEE-CC-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHH
T ss_pred --------------EEE-ECCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 001 1112245679999998542 34466788999976666544332 11111
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
.+..++... .+.++++|+||+|+.+..
T Consensus 121 ~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 121 RAKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HHTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 122333333 368999999999998654
No 142
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.23 E-value=2.4e-11 Score=109.83 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
...+|+|+|++|+|||||+|++++..+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445899999999999999999998875
No 143
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.22 E-value=3.7e-11 Score=126.98 Aligned_cols=108 Identities=8% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...+.++||||.... ..+...|+++++.+|++ ++++..-.....+..++...+ +.++|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V-~D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLL-LDSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEE-ECGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEE-EeCCCchhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 457899999995432 22345677888855554 455443223333444444443 589999999999
Q ss_pred ccCCCCcHHHHhcCcccccCCCeEEEEeCChhhhccCccHHHH
Q 012279 219 LMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s~~~~~~~~~~~~~ 261 (467)
+.+......+.+.......+..++.+++.++.+++.....+..
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 9865442222222122233345777777766666555444433
No 144
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.21 E-value=1.2e-11 Score=111.57 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++++|||||+|+|++..+ +....+ |.... .
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~-t~~~~---~------------------------------------ 44 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFEN---Y------------------------------------ 44 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEE---E------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-cccee---E------------------------------------
Confidence 346899999999999999999999875 322111 11110 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
...+.+ ......+.|+||||.... ..+...|++.+|++|+++. ++....-...
T Consensus 45 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~ 97 (184)
T 1m7b_A 45 ------------TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFD-ISRPETLDSV 97 (184)
T ss_dssp ------------EEEEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEE-TTCHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEE-CCCHHHHHHH
Confidence 000111 122346899999997542 2335568889997666654 4332111111
Q ss_pred ----HHHHHHhCCCCCceEEEeccCcccC
Q 012279 197 ----MKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 197 ----l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
+..++...+ +.|+++|.||+|+.+
T Consensus 98 ~~~~~~~i~~~~~-~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 98 LKKWKGEIQEFCP-NTKMLLVGCKSDLRT 125 (184)
T ss_dssp HHTHHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHCC-CCCEEEEEEcchhhc
Confidence 223333333 689999999999975
No 145
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.20 E-value=7.1e-11 Score=109.31 Aligned_cols=116 Identities=21% Similarity=0.358 Sum_probs=71.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
...++|+++|++|+|||||+|+|++..+.+. ..+..|+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~-------------------------------------- 48 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLS-------------------------------------- 48 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceE--------------------------------------
Confidence 4678999999999999999999999875221 11112210
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcC----CCeEEEEEecCCccc
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK----PNSVILAISPANQDI 191 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~----~~~iIL~V~~a~~d~ 191 (467)
+ . ......+.++||||.... +.+...|++. ++++|+++......-
T Consensus 49 ----~-------------~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~ 97 (218)
T 1nrj_B 49 ----A-------------A-DYDGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPK 97 (218)
T ss_dssp ----E-------------T-TGGGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTT
T ss_pred ----E-------------E-EeeCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChH
Confidence 0 0 002458999999998652 3445555554 787665554441111
Q ss_pred ccHHHHHHHHHh-------CCCCCceEEEeccCcccCCC
Q 012279 192 ATSDAMKLAREV-------DPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 192 ~~~~~l~l~~~~-------d~~~~rti~VltK~D~~~~~ 223 (467)
.-.........+ .+.+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 98 KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 112222222221 34678999999999998654
No 146
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.19 E-value=2e-11 Score=121.16 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=67.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhhhc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (467)
+|+|+|.+++|||||+|+|++..+ +.. ..|....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~------------------------------------------- 200 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFN------------------------------------------- 200 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEE-------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceE-------------------------------------------
Confidence 799999999999999999999875 211 1121110
Q ss_pred CCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH-H
Q 012279 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM-K 198 (467)
Q Consensus 120 g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l-~ 198 (467)
...+.. ....++|+||||... +..+...|++.+|.+|+++...+.+ .-.... .
T Consensus 201 -----------~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~vilV~D~~~~~-s~~~~~~~ 254 (329)
T 3o47_A 201 -----------VETVEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRE-RVNEAREE 254 (329)
T ss_dssp -----------EEEEEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSS-SHHHHHHH
T ss_pred -----------EEEEec-CcEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCchH-HHHHHHHH
Confidence 001111 235789999999543 3445778899999666655443322 122222 2
Q ss_pred HHHHhCC---CCCceEEEeccCcccCCC
Q 012279 199 LAREVDP---TGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 199 l~~~~d~---~~~rti~VltK~D~~~~~ 223 (467)
+...+.. .+.++++|+||+|+.+..
T Consensus 255 ~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 255 LMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHhhhccCCCeEEEEEECccCCccc
Confidence 2233332 378999999999998654
No 147
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.18 E-value=1.4e-11 Score=113.50 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+|+|++|+|||||+|+|++..+ +....+ |.... .
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~-t~~~~---~------------------------------------ 65 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFEN---Y------------------------------------ 65 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEE---E------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCC-cccee---E------------------------------------
Confidence 446899999999999999999999875 322111 11110 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
...+.+ ......+.|+||||.... ..+...|+++++++|+++...+. ..-..
T Consensus 66 ------------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~-~s~~~~ 118 (205)
T 1gwn_A 66 ------------TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRP-ETLDSV 118 (205)
T ss_dssp ------------EEEEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCH-HHHHHH
Confidence 000111 112347899999997542 23355688899976666544332 11111
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
.+..++...+ +.++++|.||+|+.+
T Consensus 119 ~~~~~~~i~~~~~-~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 119 LKKWKGEIQEFCP-NTKMLLVGCKSDLRT 146 (205)
T ss_dssp HHTHHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHCC-CCCEEEEEechhhcc
Confidence 1223333333 689999999999975
No 148
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=4.5e-12 Score=128.72 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccccccE
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 76 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~ 76 (467)
+|++||.+|+|||||+|+|+|..........||+.|+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~ 38 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEAN 38 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCc
Confidence 6999999999999999999998732233344666654
No 149
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.17 E-value=2e-11 Score=120.32 Aligned_cols=117 Identities=23% Similarity=0.213 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
...+|+++|.+|+|||||++++++..+ +......+.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEE-------------------------------------
Confidence 567899999999999999999998765 222222222111000
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHH-
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~- 195 (467)
+.+ ......+.|+||||.... ..+...|++++|++|+++. ++....-..
T Consensus 196 ---------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 245 (332)
T 2wkq_A 196 ---------------VMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFS-LVSPASFHHV 245 (332)
T ss_dssp ---------------EEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEE-TTCHHHHHHH
T ss_pred ---------------EEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEe-CCCHHHHHHH
Confidence 011 112245679999997652 3446678899997666554 433221112
Q ss_pred ---HHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 196 ---~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+..++...+ +.|+++|+||+|+.+.
T Consensus 246 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 246 RAKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HHTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 1233344434 7899999999999764
No 150
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.15 E-value=1.3e-10 Score=121.70 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=71.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (467)
..+|++||.+|+|||||+|+|++..+ +. ...|+.+..-
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~--------------------------------------- 359 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVE--------------------------------------- 359 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEE---------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEE---------------------------------------
Confidence 45899999999999999999999874 21 1112222100
Q ss_pred hcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHH
Q 012279 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (467)
Q Consensus 118 ~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l 197 (467)
.+.. ....+.|+||||... +..+...|++++|.+|+++. ++.........
T Consensus 360 ---------------~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~V~D-~~~~~s~~~~~ 409 (497)
T 3lvq_E 360 ---------------TVTY-KNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVD-CADRDRIDEAR 409 (497)
T ss_dssp ---------------EEES-SSCEEEEEEECCCGG-------------GSGGGGGGGTTCCEEEEEEE-TTCGGGHHHHH
T ss_pred ---------------EEEe-CCEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEE-CcchhHHHHHH
Confidence 1111 335789999999654 24457789999996666554 44322222222
Q ss_pred HHHHHh-C---CCCCceEEEeccCcccCC
Q 012279 198 KLAREV-D---PTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 198 ~l~~~~-d---~~~~rti~VltK~D~~~~ 222 (467)
.....+ . ..+.++|+|+||+|+.+.
T Consensus 410 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 410 QELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 222222 2 247899999999999764
No 151
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=9.2e-11 Score=108.81 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
...+|+|||++|+|||||+|+++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999999854
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.14 E-value=2.1e-11 Score=127.89 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=76.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..|.|+++|.+++|||||+++|++..+.....+..|...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 578999999999999999999998765222222222211
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
... .+..++...++||||||.... ..+...+++.+|.+||+ ++++... ....
T Consensus 42 ---------~~~----~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vILV-VDa~dg~-~~qt 93 (537)
T 3izy_P 42 ---------GAF----LVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVILV-VAADDGV-MKQT 93 (537)
T ss_dssp ---------TSC----CBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCEEE-CBSSSCC-CHHH
T ss_pred ---------eEE----EEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEEEE-EECCCCc-cHHH
Confidence 000 122234458999999997542 33345677888965555 4555544 3344
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
...+..+...+.|+|+|+||+|+.+.
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHHcCCcEEEEEeccccccc
Confidence 55556666678899999999999754
No 153
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.12 E-value=4.1e-10 Score=120.44 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=78.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 36 ~~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....+|++||.+++|||||+|+|++... ..+...+ ..+.......+..-.++..+.+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~------~i~~~~i-----------~~~~~~~~~~g~~~~~~a~~~d~~~~-- 225 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN------IVNQSQL-----------RKLQRESETMGKSSFKFAWIMDQTNE-- 225 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS------CSCCHHH-----------HHHHHHSSCSSSSCCSSSHHHHHHHH--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC------CccHHHH-----------HHHHhhhhhccccccceeeeeccchh--
Confidence 3456899999999999999999998743 1111000 00000000011111122222222222
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-----
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD----- 190 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d----- 190 (467)
++..|.+..... .. +.. ....++||||||..+ +...+..+++.+|++|++|. ++.+
T Consensus 226 e~~~GiTid~~~--~~--~~~-~~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVD-a~~g~~e~~ 286 (611)
T 3izq_1 226 ERERGVTVSICT--SH--FST-HRANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVD-CSTNAFESG 286 (611)
T ss_dssp HHHTTTCCSCSC--CE--EEC-SSCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEE-CSHHHHHTT
T ss_pred hhhCCeeEeeee--EE--Eec-CCceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEE-CCCCccccc
Confidence 223343322222 22 222 346899999999854 45667778899996666554 4432
Q ss_pred --cccHHHHHHHHHhCCCC-CceEEEeccCcccCC
Q 012279 191 --IATSDAMKLAREVDPTG-ERTFGVLTKLDLMDK 222 (467)
Q Consensus 191 --~~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~ 222 (467)
... .....+..+...+ .++|+|+||+|+.+.
T Consensus 287 ~~~~~-qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 287 FDLDG-QTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp CCTTS-HHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred chhhh-HHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 111 2222333333334 459999999999863
No 154
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.12 E-value=7.5e-11 Score=122.86 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=45.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~l~l~~~~d~~~~rti~VltK 216 (467)
...++||||||..+ +......++..+|.+||++ +++.+.. +.+.+.+++. .+.+.|+|+||
T Consensus 72 ~~~i~iiDtPGh~~-------------~~~~~~~~~~~aD~~ilVv-da~~g~~~qt~e~l~~~~~---~~ip~IvviNK 134 (482)
T 1wb1_A 72 NYRITLVDAPGHAD-------------LIRAVVSAADIIDLALIVV-DAKEGPKTQTGEHMLILDH---FNIPIIVVITK 134 (482)
T ss_dssp TEEEEECCCSSHHH-------------HHHHHHHHTTSCCEEEEEE-ETTTCSCHHHHHHHHHHHH---TTCCBCEEEEC
T ss_pred CEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEE-ecCCCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 35899999999632 3455677889999666655 5554332 2233334443 47888999999
Q ss_pred CcccCC
Q 012279 217 LDLMDK 222 (467)
Q Consensus 217 ~D~~~~ 222 (467)
+|+.+.
T Consensus 135 ~Dl~~~ 140 (482)
T 1wb1_A 135 SDNAGT 140 (482)
T ss_dssp TTSSCH
T ss_pred CCcccc
Confidence 999863
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.11 E-value=8.7e-11 Score=117.93 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcCC-------------CeEEEEEecCCcccccHHHHHHHHHhCC
Q 012279 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEKP-------------NSVILAISPANQDIATSDAMKLAREVDP 205 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 205 (467)
..++++||||+...... ..-..+...+......|++.. ++++++|.++...+...+ ..+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d-~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHH-HHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhH-HHHHHHhc-
Confidence 46899999999543211 011223333444444666543 345556655455553333 45666665
Q ss_pred CCCceEEEeccCcccCCC
Q 012279 206 TGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 206 ~~~rti~VltK~D~~~~~ 223 (467)
.+.++|+|+||+|+....
T Consensus 173 ~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp S-SCEEEEEECCSSSCHH
T ss_pred cCCCEEEEEECCCCCCHH
Confidence 578999999999998643
No 156
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.10 E-value=1.5e-10 Score=118.05 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc---cHHHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA---TSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~---~~~~l~l~~~~d~~~~rti~VltK 216 (467)
..++||||||..+ +......++..+|.+||++ +++.... +.+.+.+++.+.. .++++|+||
T Consensus 75 ~~~~iiDtPGh~~-------------~~~~~~~~~~~~D~~ilVv-da~~~~~~~qt~~~~~~~~~~~~--~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHEV-------------LMATMLSGAALMDGAILVV-AANEPFPQPQTREHFVALGIIGV--KNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCGG-------------GHHHHHHHHTTCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred ceEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEE-ECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEEC
Confidence 4789999999643 3556777888999666655 4554432 2233444444432 579999999
Q ss_pred CcccCCC
Q 012279 217 LDLMDKG 223 (467)
Q Consensus 217 ~D~~~~~ 223 (467)
+|+.+..
T Consensus 139 ~Dl~~~~ 145 (403)
T 3sjy_A 139 VDVVSKE 145 (403)
T ss_dssp GGGSCHH
T ss_pred ccccchH
Confidence 9998653
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.09 E-value=3.6e-10 Score=116.39 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---------ccHHHHHHHHHhCCCCCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDPTGER 209 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~~~~r 209 (467)
...++||||||..+ +......++..+|++||+| +++... .+.+.+.++. ..+.+
T Consensus 94 ~~~~~iiDTPGh~~-------------f~~~~~~~~~~aD~~ilVV-Da~~g~~e~~~~~~~qt~e~l~~~~---~~~v~ 156 (439)
T 3j2k_7 94 KKHFTILDAPGHKS-------------FVPNMIGGASQADLAVLVI-SARKGEFETGFEKGGQTREHAMLAK---TAGVK 156 (439)
T ss_pred CeEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEE-ECCCCccccccCCCchHHHHHHHHH---HcCCC
Confidence 45899999999643 3455667788999666655 454432 2233333333 34566
Q ss_pred -eEEEeccCcccC
Q 012279 210 -TFGVLTKLDLMD 221 (467)
Q Consensus 210 -ti~VltK~D~~~ 221 (467)
+|+|+||+|+.+
T Consensus 157 ~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 157 HLIVLINKMDDPT 169 (439)
T ss_pred eEEEEeecCCCcc
Confidence 899999999964
No 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.08 E-value=1.6e-10 Score=105.20 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
...+|++||++|+|||||+|+++|.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999974
No 159
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.07 E-value=1.4e-10 Score=105.93 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
...+|+++|+.|||||||+++|+|..+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999999875
No 160
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.06 E-value=3.7e-10 Score=118.64 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..+.|+++|.+++|||||+|+|++..-.....|.+.. ... ....+.++...+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~-----------------------~~~---~~~~~~d~~~~e~- 64 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKS-----------------------RKA---ARHATSDWMELEK- 64 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHT-----------------------C-------CCHHHHHHHHH-
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeec-----------------------ccc---ccceecccchhhh-
Confidence 5679999999999999999999854321111111000 000 0001112221111
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
..|. .+....+.+. . ....++||||||..+. ...+..|++.+|++|+++. +.... ....
T Consensus 65 -~~Gi--Ti~~~~~~~~--~-~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvD-a~~g~-~~~t 123 (528)
T 3tr5_A 65 -QRGI--SVTTSVMQFP--Y-KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVID-AAKGV-EPRT 123 (528)
T ss_dssp -HHCC--SSSSSEEEEE--E-TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEE-TTTCS-CHHH
T ss_pred -cCCe--eEEEeEEEEE--e-CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEe-CCCCC-CHHH
Confidence 1232 2223333322 2 3468999999998652 3457889999997666554 54444 3444
Q ss_pred HHHHHHhCCCCCceEEEeccCcccCC
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+.+.+...+.|+++|+||+|+...
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 55666666778999999999999643
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.05 E-value=3.5e-10 Score=117.95 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=44.7
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-c-----ccHHHHHHHHHhCCCC-Cce
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-----ATSDAMKLAREVDPTG-ERT 210 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~-----~~~~~l~l~~~~d~~~-~rt 210 (467)
....++||||||..+ +...+..++..+|++||++. ++.. . ......+.+..+...+ .++
T Consensus 109 ~~~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvD-a~~g~~~~~~~~~~qt~e~~~~~~~~~~~~i 174 (483)
T 3p26_A 109 HRANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVD-CSTNAFESGFDLDGQTKEHMLLASSLGIHNL 174 (483)
T ss_dssp SSCEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEE-CCC------CCCCHHHHHHHHHHHHTTCCCE
T ss_pred CCceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEE-CCCCccccccchhhhHHHHHHHHHHcCCCcE
Confidence 346899999999854 35667788999997666655 4432 1 0112222222222234 469
Q ss_pred EEEeccCcccCC
Q 012279 211 FGVLTKLDLMDK 222 (467)
Q Consensus 211 i~VltK~D~~~~ 222 (467)
|+|+||+|+.+.
T Consensus 175 IvviNK~Dl~~~ 186 (483)
T 3p26_A 175 IIAMNKMDNVDW 186 (483)
T ss_dssp EEEEECGGGGTT
T ss_pred EEEEECcCcccc
Confidence 999999999863
No 162
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.04 E-value=4.8e-11 Score=107.65 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.+|+++|++|+|||||+++|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999995
No 163
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.02 E-value=1.6e-09 Score=108.28 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999974
No 164
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.00 E-value=1.4e-09 Score=108.93 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
..+.|+++|.+|+||||++++|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 165
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.00 E-value=6.2e-10 Score=118.19 Aligned_cols=134 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..+.|+++|..++|||||+++|++.. +..++... . . .+.+... .+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--~--------~-----------------~~~D~~~--~E 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK--R--------E-----------------QLLDTLD--VE 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc--c--------c-----------------cccccch--hh
Confidence 56789999999999999999998632 11111000 0 0 0000000 00
Q ss_pred hhcCCCCCcCCCcEEEEeecC--CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~--~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
+..| ..+....+.+..... ....++||||||..+ +...+..+++.+|++||+| +++.....+
T Consensus 50 rerG--ITI~~~~~~~~~~~~dg~~~~inliDTPGh~d-------------F~~ev~r~l~~aD~aILVV-Da~~gv~~q 113 (600)
T 2ywe_A 50 RERG--ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD-------------FSYEVSRALAACEGALLLI-DASQGIEAQ 113 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGG-------------GHHHHHHHHHTCSEEEEEE-ETTTBCCHH
T ss_pred hccc--ceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh-------------HHHHHHHHHHhCCEEEEEE-ECCCCccHH
Confidence 1112 223333444433322 235789999999865 2445677788999766655 555544333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
. ..........+.+.|+|+||+|+...
T Consensus 114 t-~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 114 T-VANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp H-HHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred H-HHHHHHHHHCCCCEEEEEeccCcccc
Confidence 2 22222233357899999999999754
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.97 E-value=5.4e-10 Score=115.71 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=76.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC-CCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~-~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (467)
....|+++|.+++|||||+|+|++.. .++... . ..+..-....+..-.++..+.+....+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-----------------~~~~~~~~~~g~~~~~~a~~~d~~~~e- 66 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-----------------EKFEKEAAELGKGSFKYAWVLDKLKAE- 66 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-----------------HHHHHHGGGGSSSCCCHHHHHHHHHHH-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-----------------HHhhhhHHhcCCcchhhhhhhccchhH-
Confidence 34689999999999999999999741 111000 0 000000000000011222233322222
Q ss_pred hhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc----
Q 012279 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---- 191 (467)
Q Consensus 116 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---- 191 (467)
+..|.+..+.. . .+.. ....++||||||..+ +...+..++..+|.+||+| +++...
T Consensus 67 -r~~GiTi~~~~--~--~~~~-~~~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVv-da~~g~~~~s 126 (458)
T 1f60_A 67 -RERGITIDIAL--W--KFET-PKYQVTVIDAPGHRD-------------FIKNMITGTSQADCAILII-AGGVGEFEAG 126 (458)
T ss_dssp -HHTTCCCSCSC--E--EEEC-SSEEEEEEECCCCTT-------------HHHHHHHSSSCCSEEEEEE-ECSHHHHHHH
T ss_pred -HhcCcEEEEEE--E--EEec-CCceEEEEECCCcHH-------------HHHHHHhhhhhCCEEEEEE-eCCcCccccc
Confidence 22343322222 1 2223 335799999999653 4556778899999666655 454332
Q ss_pred -----ccHHHHHHHHHhCCCCCc-eEEEeccCcccC
Q 012279 192 -----ATSDAMKLAREVDPTGER-TFGVLTKLDLMD 221 (467)
Q Consensus 192 -----~~~~~l~l~~~~d~~~~r-ti~VltK~D~~~ 221 (467)
.+.+.+.+++. .+.+ +|+|+||+|+.+
T Consensus 127 f~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 127 ISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp TCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred cCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12223334433 3554 899999999984
No 167
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.97 E-value=5.8e-10 Score=118.63 Aligned_cols=134 Identities=18% Similarity=0.246 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
....|+++|..++|||||+++|++.. +..++... +..+.|..+ .+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~---------------------~~~~~D~~~--------~E 47 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDREM---------------------EAQVLDSMD--------LE 47 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCcccccc---------------------cccccccch--------hh
Confidence 45689999999999999999998642 11111000 000000000 00
Q ss_pred hhcCCCCCcCCCcEEEEeec--CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 117 RVTGKTKQISPIPIHLSIYS--PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~--~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
+..| ..+....+.+.... .....++||||||..+ +...+..+++.+|.+||+| +++.....+
T Consensus 48 rerG--iTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d-------------F~~ev~~~l~~aD~aILVV-Da~~gv~~q 111 (599)
T 3cb4_D 48 RERG--ITIKAQSVTLDYKASDGETYQLNFIDTPGHVD-------------FSYEVSRSLAACEGALLVV-DAGQGVEAQ 111 (599)
T ss_dssp -----------CEEEEEEECTTSCEEEEEEEECCCCGG-------------GHHHHHHHHHHCSEEEEEE-ETTTCCCTH
T ss_pred hccc--ceeeeeEEEEEEecCCCCeEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCCHH
Confidence 0011 12223333433332 2236789999999865 3455778888899766655 455444333
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
... ........+.+.|+|+||+|+.+.
T Consensus 112 t~~-~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 112 TLA-NCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HHH-HHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HHH-HHHHHHHCCCCEEEeeeccCcccc
Confidence 322 222222347899999999999764
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.97 E-value=2.6e-10 Score=118.59 Aligned_cols=114 Identities=21% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..|.|+++|+.++|||||+++|.+..+.....+..|...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 578999999999999999999987553211111111100
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc--ccH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~--~~~ 194 (467)
... .+. .+...++||||||..... .+...++..+|.+||++. ++.+. .+.
T Consensus 42 ---------~~~----~v~-~~~~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVd-a~~g~~~qT~ 93 (501)
T 1zo1_I 42 ---------GAY----HVE-TENGMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVA-ADDGVMPQTI 93 (501)
T ss_dssp ---------SCC----CCC-TTSSCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEE-TTTBSCTTTH
T ss_pred ---------EEE----EEE-ECCEEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEee-cccCccHHHH
Confidence 000 011 123579999999976532 223456788897776664 54432 233
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
+.+..++ ..+.|+|+|+||+|+.+.
T Consensus 94 e~l~~~~---~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 94 EAIQHAK---AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp HHHHHHH---HTTCCEEEEEECSSSSTT
T ss_pred HHHHHHH---hcCceEEEEEEecccccc
Confidence 4444444 346889999999999753
No 169
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.96 E-value=7.6e-10 Score=100.54 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
...+|+++|+.|||||||++.|+|..+
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999999875
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.94 E-value=3.8e-10 Score=120.12 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
+.++||||||..+.. .+...+++.+|.+||++ +++.++. .......+.+...+.|+++|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~-------------~~~~r~~~~aD~aILVv-Da~~Gv~-~qT~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFT-------------TLRKRGGALADLAILIV-DINEGFK-PQTQEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCT-------------TSBCSSSBSCSEEEEEE-ETTTCCC-HHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEE-ECCCCcc-HhHHHHHHHHHHcCCeEEEEeccccc
Confidence 468999999986532 22335677889655554 5555442 22333333344457899999999999
Q ss_pred cC
Q 012279 220 MD 221 (467)
Q Consensus 220 ~~ 221 (467)
..
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 74
No 171
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.94 E-value=3.5e-09 Score=108.02 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---ccHHHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
..++||||||..+ +......++..+|.+||++ +++... .+.+.+.+++.+. ..++++|+||
T Consensus 81 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGHET-------------LMATMLSGASLMDGAILVI-AANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHTTCSCCSEEEEEE-ETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCHHH-------------HHHHHHHhHhhCCEEEEEE-ECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 4789999999532 3344455567778665555 555433 1233344444332 2478999999
Q ss_pred CcccCCC
Q 012279 217 LDLMDKG 223 (467)
Q Consensus 217 ~D~~~~~ 223 (467)
+|+.+..
T Consensus 145 ~Dl~~~~ 151 (408)
T 1s0u_A 145 IDLVDEK 151 (408)
T ss_dssp TTSSCTT
T ss_pred cCCCCHH
Confidence 9998654
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.94 E-value=2.4e-09 Score=112.62 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...++||||||..+. ...+..|+..+|++|+++. +.... ......+.+.+...+.++++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvD-a~~g~-~~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVID-AAKGV-EDRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEE-TTTCS-CHHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEe-CCccc-hHHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 468999999998652 3446778999997666655 44443 33345566667777899999999999
Q ss_pred ccCCC
Q 012279 219 LMDKG 223 (467)
Q Consensus 219 ~~~~~ 223 (467)
+....
T Consensus 146 l~~~~ 150 (529)
T 2h5e_A 146 RDIRD 150 (529)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97643
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=3.3e-09 Score=97.27 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=42.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc---CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE---KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~---~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
++.++||||+..... +....+.++..+..|++ ..+.+ +++.++....... ..++...+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGL-VVLMDIRHPLKDL-DQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEE-EEEEETTSCCCHH-HHHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEE-EEEEECCCCCchh-HHHHHHHHHHcCCCeEEEEecc
Confidence 788999999864211 12222334555556653 44544 4455554433222 2223333334578899999999
Q ss_pred cccCCC
Q 012279 218 DLMDKG 223 (467)
Q Consensus 218 D~~~~~ 223 (467)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 988654
No 174
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.93 E-value=4e-09 Score=107.69 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---ccHHHHHHHHHhCCCCCceEEEecc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
..++||||||..+ +.......+..+|.+||+| +++... .+.+.+.+++.+. ..++++|+||
T Consensus 83 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHEA-------------LMTTMLAGASLMDGAILVI-AANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHHCGGGCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCChHH-------------HHHHHHhhhhhCCEEEEEE-ECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 4689999999532 3344556677889666655 555432 2334454555443 2578999999
Q ss_pred CcccCCC
Q 012279 217 LDLMDKG 223 (467)
Q Consensus 217 ~D~~~~~ 223 (467)
+|+.+..
T Consensus 147 ~Dl~~~~ 153 (410)
T 1kk1_A 147 IELVDKE 153 (410)
T ss_dssp GGGSCHH
T ss_pred ccCCCHH
Confidence 9998643
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.92 E-value=6.9e-09 Score=106.67 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccccc--HHHHHHHHHhCCCCC-ceEEEe
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGE-RTFGVL 214 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~-rti~Vl 214 (467)
....++||||||..+ +......++..+|.+||++ +++..... .+.+.+++.+ +. ++|+|+
T Consensus 102 ~~~~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVv-Da~~g~~~qt~~~l~~~~~~---~~~~iIvvi 164 (434)
T 1zun_B 102 AKRKFIIADTPGHEQ-------------YTRNMATGASTCDLAIILV-DARYGVQTQTRRHSYIASLL---GIKHIVVAI 164 (434)
T ss_dssp SSEEEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEE-ETTTCSCHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred CCceEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEE-ECCCCCcHHHHHHHHHHHHc---CCCeEEEEE
Confidence 346799999999654 2344557889999666655 45544322 2234444443 44 689999
Q ss_pred ccCcccCC
Q 012279 215 TKLDLMDK 222 (467)
Q Consensus 215 tK~D~~~~ 222 (467)
||+|+.+.
T Consensus 165 NK~Dl~~~ 172 (434)
T 1zun_B 165 NKMDLNGF 172 (434)
T ss_dssp ECTTTTTS
T ss_pred EcCcCCcc
Confidence 99999863
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.91 E-value=3.1e-09 Score=106.83 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCce-EEEec
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERT-FGVLT 215 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~l~l~~~~d~~~~rt-i~Vlt 215 (467)
...++||||||..+. ......+++.+|.+||+|. +.+.. +.+.+.+++. .+.+. |+|+|
T Consensus 59 ~~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvN 120 (370)
T 2elf_A 59 GRNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALT 120 (370)
T ss_dssp SSEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 356999999998542 3334556789997777765 44443 2233334443 45666 99999
Q ss_pred -cCcc
Q 012279 216 -KLDL 219 (467)
Q Consensus 216 -K~D~ 219 (467)
|+|+
T Consensus 121 NK~Dl 125 (370)
T 2elf_A 121 RSDST 125 (370)
T ss_dssp CGGGS
T ss_pred eccCC
Confidence 9999
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.89 E-value=4.3e-09 Score=107.22 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=45.7
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEecc
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK 216 (467)
....++||||||..+ +......++..+|.+|+++. ++.... ....+.+..+...+.+ +++|+||
T Consensus 73 ~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvd-a~~g~~-~qt~~~l~~~~~~~ip~iivviNK 137 (405)
T 2c78_A 73 AKRHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILVVS-AADGPM-PQTREHILLARQVGVPYIVVFMNK 137 (405)
T ss_dssp SSCEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEEEE-TTTCCC-HHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCeEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEEE-CCCCCc-HHHHHHHHHHHHcCCCEEEEEEEC
Confidence 346899999999764 24556778889997766665 444332 2223333333334667 7899999
Q ss_pred CcccC
Q 012279 217 LDLMD 221 (467)
Q Consensus 217 ~D~~~ 221 (467)
+|+.+
T Consensus 138 ~Dl~~ 142 (405)
T 2c78_A 138 VDMVD 142 (405)
T ss_dssp GGGCC
T ss_pred ccccC
Confidence 99985
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.87 E-value=1e-09 Score=119.21 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=47.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...++||||||..+. ...+..+++.+|.+|+++ ++...... ....+.+.+...+.+.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVv-Da~~g~~~-~~~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVL-DAQSGVEP-QTETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEE-ETTTBSCH-HHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEE-CCCCCCcH-HHHHHHHHHHHcCCCEEEEEECCC
Confidence 468999999998752 334677888899666655 45444322 333344445456889999999999
Q ss_pred ccCC
Q 012279 219 LMDK 222 (467)
Q Consensus 219 ~~~~ 222 (467)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 179
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=5.1e-09 Score=106.38 Aligned_cols=82 Identities=15% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCcEEEeCCCCCccccCC-CCccH----HHHHHHHHHHhhc---------C--CCeEEEEEecCCcccccHHHHHHHHHh
Q 012279 140 VNLTLIDLPGLTKVAVEG-QPDTI----VEDIESMVRSYVE---------K--PNSVILAISPANQDIATSDAMKLAREV 203 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~-q~~~~----~~~i~~~~~~yi~---------~--~~~iIL~V~~a~~d~~~~~~l~l~~~~ 203 (467)
+.++++|+||+....... ....+ ..++......+.. . .|+++++++|+..++...+ +.+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH
Confidence 478999999997532100 01112 2233333444421 1 1346888888887775444 6788888
Q ss_pred CCCCCceEEEeccCcccCCC
Q 012279 204 DPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 204 d~~~~rti~VltK~D~~~~~ 223 (467)
. .+.++|+|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 689999999999998654
No 180
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.81 E-value=8.6e-09 Score=106.01 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=44.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-------ccc--HHHHHHHHHhCCCC-C
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-------IAT--SDAMKLAREVDPTG-E 208 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-------~~~--~~~l~l~~~~d~~~-~ 208 (467)
...++||||||..+ +......++..+|++||++. ++.+ +.. .+.+.+++. .+ .
T Consensus 83 ~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvD-a~~gsfe~~~~~~~qt~~~~~~~~~---~~~~ 145 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVS-AKKGEYEAGMSVEGQTREHIILAKT---MGLD 145 (435)
T ss_dssp SCEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEE-CSTTHHHHHHSTTCHHHHHHHHHHH---TTCT
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEE-CCCCccccccccchHHHHHHHHHHH---cCCC
Confidence 46799999999765 34557778999997666665 4433 211 222233333 34 3
Q ss_pred ceEEEeccCcccCC
Q 012279 209 RTFGVLTKLDLMDK 222 (467)
Q Consensus 209 rti~VltK~D~~~~ 222 (467)
++|+|+||+|+.+.
T Consensus 146 ~iivviNK~Dl~~~ 159 (435)
T 1jny_A 146 QLIVAVNKMDLTEP 159 (435)
T ss_dssp TCEEEEECGGGSSS
T ss_pred eEEEEEEcccCCCc
Confidence 68999999999863
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.79 E-value=7.7e-09 Score=112.25 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...++||||||..+ +...+..+++.+|.+|+++. +...... ......+.+...+.+.++|+||+|
T Consensus 76 ~~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvD-a~~g~~~-~t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVD-------------FTIEVERSMRVLDGAIVVFD-SSQGVEP-QSETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEEEEE-TTTCSCH-HHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccc-------------hHHHHHHHHHHCCEEEEEEE-CCCCcch-hhHHHHHHHHHcCCCEEEEEECCC
Confidence 46899999999865 35567888899997666655 4443322 223333444445789999999999
Q ss_pred ccCC
Q 012279 219 LMDK 222 (467)
Q Consensus 219 ~~~~ 222 (467)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9754
No 182
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.78 E-value=9.3e-09 Score=104.48 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=44.5
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEecc
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK 216 (467)
....++||||||..+ +......++..+|.+||++ +++.....+ ..+.+..+...+.+ .++|+||
T Consensus 64 ~~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVv-da~~g~~~q-t~e~l~~~~~~~vp~iivviNK 128 (397)
T 1d2e_A 64 AARHYAHTDCPGHAD-------------YVKNMITGTAPLDGCILVV-AANDGPMPQ-TREHLLLARQIGVEHVVVYVNK 128 (397)
T ss_dssp SSCEEEEEECSSHHH-------------HHHHHHHTSSCCSEEEEEE-ETTTCSCHH-HHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCeEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEE-ECCCCCCHH-HHHHHHHHHHcCCCeEEEEEEC
Confidence 346899999999643 3455677889999766665 454433222 22222333334677 6899999
Q ss_pred CcccC
Q 012279 217 LDLMD 221 (467)
Q Consensus 217 ~D~~~ 221 (467)
+|+.+
T Consensus 129 ~Dl~~ 133 (397)
T 1d2e_A 129 ADAVQ 133 (397)
T ss_dssp GGGCS
T ss_pred cccCC
Confidence 99985
No 183
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.77 E-value=5.3e-09 Score=104.35 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=26.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCccccccccccc
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (467)
.+|++||.+|+|||||+|+|+|..+.......||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999874333334566665
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=3.1e-08 Score=100.88 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCcEEEeCCCCCccccCC-CCccHHHHHHHHHHHh-----------hcCCC--eEEEEEecCCcccccHHHHHHHHHhCC
Q 012279 140 VNLTLIDLPGLTKVAVEG-QPDTIVEDIESMVRSY-----------VEKPN--SVILAISPANQDIATSDAMKLAREVDP 205 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~-q~~~~~~~i~~~~~~y-----------i~~~~--~iIL~V~~a~~d~~~~~~l~l~~~~d~ 205 (467)
+.++++|+||+....... ....+.+.+......| +.+++ ++++++.|....+...+ ..+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 478999999997632110 0112222233333334 34444 34444444323443333 456777765
Q ss_pred CCCceEEEeccCcccCC
Q 012279 206 TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 206 ~~~rti~VltK~D~~~~ 222 (467)
+.++|+|+||+|+..+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 185
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.76 E-value=1.3e-08 Score=99.58 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHhhcCC-------------CeEEEEEecCCcccccHHHHHHHHHhCC
Q 012279 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEKP-------------NSVILAISPANQDIATSDAMKLAREVDP 205 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~-~q~~~~~~~i~~~~~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 205 (467)
..++++||||+...... ..-..+.+.+......|+... +++++++.|....+...+ .++++.+.+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 57899999998542110 011223333334444555432 224444544333343333 467777764
Q ss_pred CCCceEEEeccCcccCC
Q 012279 206 TGERTFGVLTKLDLMDK 222 (467)
Q Consensus 206 ~~~rti~VltK~D~~~~ 222 (467)
..++++|+||.|+...
T Consensus 155 -~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTL 170 (301)
T ss_dssp -TSCEEEEECCGGGSCH
T ss_pred -cCCEEEEEEeCCCCCH
Confidence 5689999999999864
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.76 E-value=6.5e-09 Score=105.85 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.+.|++||.+||||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4679999999999999999999975
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.76 E-value=4.2e-08 Score=106.63 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
..++||||||..+ +...+..+++.+|.+|++|. +..+.. .....+.+.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvD-a~~gv~-~qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYC-AVGGVQ-PQSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEe-CCCCCc-HHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 6899999999865 35567788899997666554 444432 22333445555567899999999998
Q ss_pred cCC
Q 012279 220 MDK 222 (467)
Q Consensus 220 ~~~ 222 (467)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 188
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.75 E-value=9.3e-10 Score=110.72 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-..|+++|.+|+|||||+|+|+|.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 357999999999999999999986
No 189
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.74 E-value=2.6e-09 Score=101.80 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCCeEEEECCC---------CCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQ---------SSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~---------ssGKSSllnaL~G~ 61 (467)
...+|+|+|++ |+|||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 45689999999 99999999999993
No 190
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.74 E-value=5.9e-10 Score=118.84 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....|+++|.+++|||||+|+|++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.74 E-value=8.3e-08 Score=95.23 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.-..++++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999964
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.72 E-value=6.6e-08 Score=96.13 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.72 E-value=9.1e-09 Score=113.97 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=46.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
...++||||||..+. ...+..|++.+|++|+++ ++......+ ...+.+.+...+.+.++|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVv-Da~~g~~~q-t~~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVV-DTIEGVCVQ-TETVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEE-ETTTBSCHH-HHHHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEE-eCCCCCCHH-HHHHHHHHHHcCCCeEEEEECCC
Confidence 467899999998762 345778899999766655 455444333 23344444445789999999999
Q ss_pred cc
Q 012279 219 LM 220 (467)
Q Consensus 219 ~~ 220 (467)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 87
No 194
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.66 E-value=2.8e-08 Score=103.11 Aligned_cols=66 Identities=24% Similarity=0.271 Sum_probs=37.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---------ccHHHHHHHHHhCCCCCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDPTGER 209 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~~~~r 209 (467)
...++||||||..+ +......++..+|.+||+|. ++... .+.+.+.+++. .+.+
T Consensus 120 ~~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvD-a~~g~~e~sf~~~~qt~e~l~~~~~---~~vp 182 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-------------YVTNMINGASQADIGVLVIS-ARRGEFEAGFERGGQTREHAVLART---QGIN 182 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEE-CSTTHHHHTTSTTCCHHHHHHHHHH---TTCS
T ss_pred CeEEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEe-CCcCccccccCCCCcHHHHHHHHHH---cCCC
Confidence 46799999999754 23445667889997666654 54432 23334444443 3565
Q ss_pred -eEEEeccCcccC
Q 012279 210 -TFGVLTKLDLMD 221 (467)
Q Consensus 210 -ti~VltK~D~~~ 221 (467)
+|+|+||+|+.+
T Consensus 183 ~iivviNK~Dl~~ 195 (467)
T 1r5b_A 183 HLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEEECTTSTT
T ss_pred EEEEEEECccCCC
Confidence 899999999965
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=4.9e-09 Score=105.40 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
..|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999999864
No 196
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.61 E-value=3.7e-08 Score=99.17 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccE
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 76 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~ 76 (467)
.-.+|++||.+|+|||||+|+|+|..+.......||..|.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~ 60 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce
Confidence 4568999999999999999999998763333345666553
No 197
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.59 E-value=2.2e-07 Score=91.08 Aligned_cols=72 Identities=14% Similarity=0.320 Sum_probs=45.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH-HHH-HHH---HHhCCCCCceEEE
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-DAM-KLA---REVDPTGERTFGV 213 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~-~~l-~l~---~~~d~~~~rti~V 213 (467)
...+.||||||-.+... | . + +...|.++++++|+++...+. +... ..+ ++. +...| +.++++|
T Consensus 45 ~v~LqIWDTAGQErf~~---~-~----l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFE---P-S----Y--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCC---C-S----H--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred EEEEEEEECCCchhccc---h-h----h--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEE
Confidence 36899999999876310 0 0 0 367889999977766554433 2111 111 122 23344 6899999
Q ss_pred eccCcccCC
Q 012279 214 LTKLDLMDK 222 (467)
Q Consensus 214 ltK~D~~~~ 222 (467)
.||+|+.+.
T Consensus 113 gNK~DL~~~ 121 (331)
T 3r7w_B 113 IHKVDGLSE 121 (331)
T ss_dssp CCCCCSSCS
T ss_pred EECcccCch
Confidence 999999864
No 198
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.59 E-value=9.5e-08 Score=91.80 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=49.1
Q ss_pred CCcEEEeCCCCCccccCCCCc-cHHHHHHHHHHHhhc--------------CCCeEEEEEecCCcccccHHHHHHHHHhC
Q 012279 140 VNLTLIDLPGLTKVAVEGQPD-TIVEDIESMVRSYVE--------------KPNSVILAISPANQDIATSDAMKLAREVD 204 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~-~~~~~i~~~~~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~l~~~~d 204 (467)
+.++++|+||+.......... .+.+.+.....+++. .+.+.++++.+....+...+ .++++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 578999999997643322211 222323222222221 23666666776666664444 66778777
Q ss_pred CCCCceEEEeccCcccCCC
Q 012279 205 PTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 205 ~~~~rti~VltK~D~~~~~ 223 (467)
.. .++|.|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8999999999998754
No 199
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.58 E-value=4e-08 Score=109.87 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=45.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc--cHHHHHHHHHhCCCCCc-eEEEe
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGER-TFGVL 214 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~l~l~~~~d~~~~r-ti~Vl 214 (467)
....++||||||..+ +......++..+|.+||+|. ++.... +.+.+.+++. .+.+ +|+|+
T Consensus 357 ~~~kI~IIDTPGHed-------------F~~~mi~gas~AD~aILVVD-AtdGv~~QTrEhL~ll~~---lgIP~IIVVI 419 (1289)
T 3avx_A 357 PTRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVA-ATDGPMPQTREHILLGRQ---VGVPYIIVFL 419 (1289)
T ss_dssp SSCEEEEEECCCHHH-------------HHHHHHHTSCCCSEEEEEEE-TTTCSCTTHHHHHHHHHH---HTCSCEEEEE
T ss_pred CCEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEc-CCccCcHHHHHHHHHHHH---cCCCeEEEEE
Confidence 346899999999653 34556678899997666654 444322 2233444444 3567 78999
Q ss_pred ccCcccC
Q 012279 215 TKLDLMD 221 (467)
Q Consensus 215 tK~D~~~ 221 (467)
||+|+.+
T Consensus 420 NKiDLv~ 426 (1289)
T 3avx_A 420 NKCDMVD 426 (1289)
T ss_dssp ECCTTCC
T ss_pred eeccccc
Confidence 9999986
No 200
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.56 E-value=7.4e-08 Score=104.13 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
....|+++|..++|||||+++|++........|.+. .+..+.+.... +
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~------------------------~g~~~~d~~~~--------e 55 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE------------------------EGTTTTDYTPE--------A 55 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG------------------------GTCCSSCCSHH--------H
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec------------------------CCcccccCCHH--------H
Confidence 456899999999999999999997543111111110 00111111110 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 196 (467)
+..| ..+...... +.. ....++|+||||..+ +...+..+++.+|.+++++. +...... ..
T Consensus 56 ~~~g--iti~~~~~~--~~~-~~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVvD-~~~g~~~-qt 115 (665)
T 2dy1_A 56 KLHR--TTVRTGVAP--LLF-RGHRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAVS-AEAGVQV-GT 115 (665)
T ss_dssp HHTT--SCCSCEEEE--EEE-TTEEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEEE-TTTCSCH-HH
T ss_pred HhcC--CeEEecceE--Eee-CCEEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEEc-CCcccch-hH
Confidence 0112 122222222 222 246789999999765 34567888889997776665 5444422 23
Q ss_pred HHHHHHhCCCCCceEEEeccCccc
Q 012279 197 MKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 197 l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
..+.+.+...+.+.++|+||+|+.
T Consensus 116 ~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHccCCEEEEecCCchh
Confidence 344444444578999999999987
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.53 E-value=3.7e-07 Score=94.97 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=45.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEeccC
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTKL 217 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~ 217 (467)
..++.||||||..... ......+..... ++ .+|.+ ++|+++.... +++..++.+.+. .+ +++|+||+
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i-~pd~v-llVvDa~~g~---~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AI-QPDNI-VYVMDASIGQ---ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HH-CCSEE-EEEEETTCCT---THHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hh-cCceE-EEEEeccccc---cHHHHHHHHHhh-cCceEEEEeCC
Confidence 4689999999987521 122222333222 33 67855 5555565543 244555555432 45 48999999
Q ss_pred cccCCCCcHHHH
Q 012279 218 DLMDKGTNALDV 229 (467)
Q Consensus 218 D~~~~~~~~~~~ 229 (467)
|....+..+.++
T Consensus 251 D~~~~~g~~l~~ 262 (504)
T 2j37_W 251 DGHAKGGGALSA 262 (504)
T ss_dssp TSCCCCTHHHHH
T ss_pred ccccchHHHHHH
Confidence 988665544443
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.52 E-value=1.7e-07 Score=88.99 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh-----CCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV-----GRDFL 64 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~-----G~~~l 64 (467)
..+.++++|..|+||||++++|. |.+++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 56778999999999999999998 76653
No 203
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.52 E-value=1e-07 Score=100.62 Aligned_cols=136 Identities=14% Similarity=0.217 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCC--CCcccChHHHHHHHHHH
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLP--KRRFTDFSMVRKEIQDE 114 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~i~~~ 114 (467)
....|+|||...+|||||.++|+-.. |...+. +..-... +..+.|+.++ +
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~t------G~i~~~----------------G~V~~~~~~~~~~~D~~~~------E 81 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFG------GAIQMA----------------GSVKARKAARHATSDWMAM------E 81 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHT------TCHHHH----------------HHHHHC--------------------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhc------Cccccc----------------ceeecCccccccccCChHH------H
Confidence 45679999999999999999998332 111110 0000000 0011122111 1
Q ss_pred HhhhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccH
Q 012279 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (467)
Q Consensus 115 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 194 (467)
.+ .| -.+....+.+. . +...++||||||..+- ..-+.+.++-.|++|++|+ |..++..+
T Consensus 82 re--RG--ITI~s~~~~~~--~-~~~~iNlIDTPGHvDF-------------~~Ev~raL~~~DgAvlVvd-a~~GV~~q 140 (548)
T 3vqt_A 82 RE--RG--ISVTTSVMQFP--Y-RDRVVNLLDTPGHQDF-------------SEDTYRVLTAVDSALVVID-AAKGVEAQ 140 (548)
T ss_dssp ----------CTTTEEEEE--E-TTEEEEEECCCCGGGC-------------SHHHHHHHHSCSEEEEEEE-TTTBSCHH
T ss_pred HH--CC--CcEeeceEEEE--E-CCEEEEEEeCCCcHHH-------------HHHHHHHHHhcCceEEEee-cCCCcccc
Confidence 11 12 22333444432 2 4478999999998874 3336667788897776665 55555443
Q ss_pred HHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 195 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
...+.+.+...+.|.|+++||+|....
T Consensus 141 -T~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 141 -TRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp -HHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred -cHHHHHHHHHhCCceEEEEecccchhc
Confidence 334556666778999999999998643
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.49 E-value=1.4e-07 Score=94.41 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=28.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccE
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 76 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~ 76 (467)
.+|++||.+|+|||||+|+|+|..........||..|+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn 39 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKN 39 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccc
Confidence 47999999999999999999987532233345666664
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.40 E-value=1.2e-07 Score=101.94 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=50.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
+...++||||||..+ +..-+.+.++-.|.+||+| +|..++..+. ..+.+.+...+.|.|+++||+
T Consensus 65 ~~~~iNlIDTPGH~D-------------F~~Ev~raL~~~DgavlVV-Da~~GV~~qT-~~v~~~a~~~~lp~i~~INKm 129 (638)
T 3j25_A 65 ENTKVNIIDTPGHMD-------------FLAEVYRSLSVLDGAILLI-SAKDGVQAQT-RILFHALRKMGIPTIFFINKI 129 (638)
T ss_dssp SSCBCCCEECCCSSS-------------THHHHHHHHTTCSEEECCE-ESSCTTCSHH-HHHHHHHHHHTCSCEECCEEC
T ss_pred CCEEEEEEECCCcHH-------------HHHHHHHHHHHhCEEEEEE-eCCCCCcHHH-HHHHHHHHHcCCCeEEEEecc
Confidence 456899999999876 3445667788889776665 4555664443 335555555678999999999
Q ss_pred cccCCC
Q 012279 218 DLMDKG 223 (467)
Q Consensus 218 D~~~~~ 223 (467)
|.....
T Consensus 130 Dr~~a~ 135 (638)
T 3j25_A 130 DQNGID 135 (638)
T ss_dssp CSSSCC
T ss_pred ccccCC
Confidence 986543
No 206
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.39 E-value=9.1e-07 Score=93.55 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
..+.|+|||.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 567899999999999999999999864
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.38 E-value=3.6e-07 Score=99.58 Aligned_cols=136 Identities=14% Similarity=0.210 Sum_probs=77.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
+...|+|||...+|||||.++|+-.. |...+.. .+. .+..+.|+.+. +.+
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~~g-~v~-----------------~~~~~~D~~~~------E~e 61 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHKLG-EVH-----------------DGAATTDWMVQ------EQE 61 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHHC------------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCcCc-eec-----------------CCCccCCChHH------HHH
Confidence 45579999999999999999998321 1111100 000 00111222211 111
Q ss_pred hhcCCCCCcCCCcEEEEeecC----CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc
Q 012279 117 RVTGKTKQISPIPIHLSIYSP----NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~----~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~ 192 (467)
.| -.+....+.+...+. +...++||||||..+- ..-+.+.++-.|.+|++| +|..++.
T Consensus 62 --RG--ITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~DgavlvV-DaveGV~ 123 (709)
T 4fn5_A 62 --RG--ITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAVVVF-CGTSGVE 123 (709)
T ss_dssp ----------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEEEEE-ETTTCSC
T ss_pred --cC--CeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEEEEE-ECCCCCc
Confidence 12 223444555544332 2357999999998773 444666777789777665 4555654
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCcccC
Q 012279 193 TSDAMKLAREVDPTGERTFGVLTKLDLMD 221 (467)
Q Consensus 193 ~~~~l~l~~~~d~~~~rti~VltK~D~~~ 221 (467)
.+ ...+.+++...+.|.|+|+||+|...
T Consensus 124 ~q-T~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 124 PQ-SETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp HH-HHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred hh-HHHHHHHHHHcCCCeEEEEccccccC
Confidence 33 34466666667899999999999864
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.33 E-value=4.1e-07 Score=87.93 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCc
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLP 65 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP 65 (467)
...+|++||.+|+|||||+|+|+|.....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceee
Confidence 34589999999999999999999987533
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.33 E-value=2.2e-07 Score=93.74 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCC-CcccccccccccE
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPL 76 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~-lP~~~~~~Tr~p~ 76 (467)
.-..|++||.+|||||||+|+|+|..+ .......||+.|.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~ 59 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce
Confidence 456899999999999999999999775 3334445677664
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.30 E-value=4.2e-06 Score=84.88 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCCCCcccccccccccEEEEEeecCCCCchhHhhhcCCCCcccChHHHHHHHHHHHh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (467)
..+.++++|+.|||||||+|+|+|..- |.. |.++-.-..+ +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~-p~~-GsI~~~g~~~------------------------------------t- 108 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN-EEE-GAAKTGVVEV------------------------------------T- 108 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT-TST-TSCCCCC-----------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC-ccC-ceEEECCeec------------------------------------c-
Confidence 445899999999999999999999742 322 2221110000 0
Q ss_pred hhcCCCCCcCCCcEEEEeecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHh-hcCCCeEEEEEecCCcccccHH
Q 012279 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSY-VEKPNSVILAISPANQDIATSD 195 (467)
Q Consensus 117 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~y-i~~~~~iIL~V~~a~~d~~~~~ 195 (467)
...+. ...+..++++++|+||+... .... .+..... +.+.+..+ . .+... . ...
T Consensus 109 ----------~~~~v--~q~~~~~~ltv~D~~g~~~~-----~~~~----~~~L~~~~L~~~~~~~-~-lS~G~-~-~kq 163 (413)
T 1tq4_A 109 ----------MERHP--YKHPNIPNVVFWDLPGIGST-----NFPP----DTYLEKMKFYEYDFFI-I-ISATR-F-KKN 163 (413)
T ss_dssp ----------CCCEE--EECSSCTTEEEEECCCGGGS-----SCCH----HHHHHHTTGGGCSEEE-E-EESSC-C-CHH
T ss_pred ----------eeEEe--ccccccCCeeehHhhcccch-----HHHH----HHHHHHcCCCccCCeE-E-eCCCC-c-cHH
Confidence 00011 11233468999999998642 1122 2222222 33434333 3 44432 2 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCccc
Q 012279 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 196 ~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
.+.+++.+...+.|+++|+||+|++
T Consensus 164 rv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 164 DIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEecCccc
Confidence 4567877777789999999999975
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.30 E-value=4.4e-06 Score=85.21 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=50.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
.+++.||||||..... ......+..+ .. +..++. +++|++|.. .+++...++.+.+....+.+|+||+|
T Consensus 182 ~~DvVIIDTaGrl~~d-----~~lm~el~~i-~~-~~~pd~-vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKED-----KALIEEMKQI-SN-VIHPHE-VILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCSE-EEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred CCCEEEEECCCcccch-----HHHHHHHHHH-HH-hhcCce-EEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCC
Confidence 3689999999976521 2222223222 22 335674 455556654 34566677777766667788999999
Q ss_pred ccCCCCcHHHHh
Q 012279 219 LMDKGTNALDVL 230 (467)
Q Consensus 219 ~~~~~~~~~~~l 230 (467)
....+..+..+.
T Consensus 251 ~~~~gG~~ls~~ 262 (443)
T 3dm5_A 251 GSAKGGGALSAV 262 (443)
T ss_dssp SCSSHHHHHHHH
T ss_pred CcccccHHHHHH
Confidence 987765555554
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.26 E-value=1.5e-07 Score=86.92 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|.|+++|.+|+|||||+|+|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999975
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.06 E-value=2.5e-06 Score=81.44 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~ 63 (467)
.+|+++|.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999875
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.04 E-value=9.6e-06 Score=82.91 Aligned_cols=80 Identities=24% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHH-HhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCC-CceEEEec
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGVLT 215 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~-~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~-~rti~Vlt 215 (467)
...++.||||||..... ...+..+.. ..+..+|. +++|+++... .++...++.+.+.- ..+.+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~~--------~~l~~~l~~i~~~~~~d~-vllVvda~~g---~~~~~~~~~~~~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE--------KGLLEEMKQIKEITNPDE-IILVIDGTIG---QQAGIQAKAFKEAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSSH--------HHHHHHHHHTTSSSCCSE-EEEEEEGGGG---GGHHHHHHHHHTTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcccc--------HHHHHHHHHHHHHhcCcc-eeEEeecccc---HHHHHHHHHHhhcccCCeEEEEe
Confidence 45689999999986521 112222211 11235775 4455556543 24555666665432 33889999
Q ss_pred cCcccCCCCcHHHH
Q 012279 216 KLDLMDKGTNALDV 229 (467)
Q Consensus 216 K~D~~~~~~~~~~~ 229 (467)
|+|....+..+..+
T Consensus 247 K~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 247 KLDGSAKGGGALSA 260 (432)
T ss_dssp CSSSCSTTHHHHHH
T ss_pred CCCCccchHHHHHH
Confidence 99987655444443
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.04 E-value=7.4e-06 Score=83.48 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=48.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
.+++.||||||...... .......+..+. ..+ +++.++|+ +++... +++...++.+.+.-..+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~vlLV-lDa~~g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDDVILV-IDASIG---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSEEEEE-EEGGGG---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcceEEE-EeCccc---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 57899999999754101 122333333322 223 45655554 455442 3455566666544466889999999
Q ss_pred ccCCCCcHHHHh
Q 012279 219 LMDKGTNALDVL 230 (467)
Q Consensus 219 ~~~~~~~~~~~l 230 (467)
....+..+..+.
T Consensus 250 ~~a~~G~als~~ 261 (433)
T 3kl4_A 250 GTAKGGGALSAV 261 (433)
T ss_dssp GCSCHHHHHHHH
T ss_pred ccccchHHHHHH
Confidence 887665555543
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.91 E-value=4e-06 Score=77.46 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
..+.|+|+|.+|+|||||+++|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999764
No 217
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.89 E-value=1.8e-05 Score=80.88 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..-.|+|+|.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4456899999999999999999974
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.78 E-value=0.00017 Score=74.32 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=49.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHH---HHHhh-cCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEec
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESM---VRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLT 215 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~---~~~yi-~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 215 (467)
.++.||||+|..... ......+..+ ++... ..++.++|+ .++.. .++++..++.+...-.-+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLv-LDatt---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLT-IDAST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEE-EEGGG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEE-ecCcc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 478999999986431 1122222222 22222 235555555 44544 34666677766544456788999
Q ss_pred cCcccCCCCcHHHHhc
Q 012279 216 KLDLMDKGTNALDVLE 231 (467)
Q Consensus 216 K~D~~~~~~~~~~~l~ 231 (467)
|.|-...+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777777766653
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.74 E-value=0.00017 Score=69.90 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=45.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCc-eEEEeccC
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTKL 217 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~ 217 (467)
..++.||||||...... .......+..+ . .+..++.+++++ ++.. .++++..++.+.+. .+ +.+|+||+
T Consensus 180 ~~D~ViIDTpg~~~~~~---~~~l~~el~~i-~-~~~~~d~vllVv-da~~---g~~~~~~~~~~~~~-~~i~gvVlnk~ 249 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGE---EAALLEEMKNI-Y-EAIKPDEVTLVI-DASI---GQKAYDLASKFNQA-SKIGTIIITKM 249 (297)
T ss_dssp TCSEEEEECCCSCCTTC---HHHHHHHHHHH-H-HHHCCSEEEEEE-EGGG---GGGHHHHHHHHHHT-CTTEEEEEECG
T ss_pred CCCEEEEeCCCCccccc---HHHHHHHHHHH-H-HHhcCCEEEEEe-eCCc---hHHHHHHHHHHHhh-CCCCEEEEeCC
Confidence 46899999999875100 11111112221 1 233577666655 4443 24556666666553 44 77889999
Q ss_pred cccCCCCcHHHH
Q 012279 218 DLMDKGTNALDV 229 (467)
Q Consensus 218 D~~~~~~~~~~~ 229 (467)
|....+..+..+
T Consensus 250 D~~~~~g~~~~~ 261 (297)
T 1j8m_F 250 DGTAKGGGALSA 261 (297)
T ss_dssp GGCTTHHHHHHH
T ss_pred CCCcchHHHHHH
Confidence 987655444444
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.70 E-value=3.9e-05 Score=74.75 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
.++.++||+|...... ..+.....+-..+++..+..|+.++| +.++.. ..+.+..++.+......+++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lL-vLDa~t---~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWL-VLDAVT---GQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEE-EEETTB---CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEE-EEcHHH---HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 3567999999864221 00111222222344455667775555 555554 234555555554333468999999998
Q ss_pred cCCCCcHHHHh
Q 012279 220 MDKGTNALDVL 230 (467)
Q Consensus 220 ~~~~~~~~~~l 230 (467)
...+..+..+.
T Consensus 260 ~a~gg~~l~i~ 270 (304)
T 1rj9_A 260 TAKGGVLIPIV 270 (304)
T ss_dssp SCCCTTHHHHH
T ss_pred cccccHHHHHH
Confidence 87776666554
No 221
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.63 E-value=2.9e-05 Score=75.68 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH---hhc-CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS---YVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~---yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 214 (467)
.+++.|+||||.... .....+.+..+..- .+. .++.+++ |+++.. .+++++.++.+.+.-.-+-+|+
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~vll-Vlda~t---~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHETLL-VIDATT---GQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSEEEE-EEEGGG---HHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcEEEE-EEECCC---CHHHHHHHHHHHhcCCCCEEEE
Confidence 468999999996321 11222223332221 122 3565444 555553 3455555555543334456789
Q ss_pred ccCcccCCCCcHHHHhc
Q 012279 215 TKLDLMDKGTNALDVLE 231 (467)
Q Consensus 215 tK~D~~~~~~~~~~~l~ 231 (467)
||.|....+..+.++..
T Consensus 257 Tk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 257 TKLDGTAKGGITLAIAR 273 (306)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCccchHHHHHHHH
Confidence 99998877776666643
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.62 E-value=0.00025 Score=69.72 Aligned_cols=80 Identities=26% Similarity=0.379 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 219 (467)
.++.++||+|..... ....+.+..+.+.. .+|-.++++. +.. .++.+..++.+.....-+++++||.|.
T Consensus 212 ~d~vliDtaG~~~~~-----~~l~~eL~~i~ral--~~de~llvLD-a~t---~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-----RNLMDEMKKIARVT--KPNLVIFVGD-ALA---GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTT-----TCHHHHHHHHHHHH--CCSEEEEEEE-GGG---TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHH-----HHHHHHHHHHHHHh--cCCCCEEEEe-cHH---HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 467789999986532 23344444443332 3564455544 443 356777777776545678899999998
Q ss_pred cCCCCcHHHHh
Q 012279 220 MDKGTNALDVL 230 (467)
Q Consensus 220 ~~~~~~~~~~l 230 (467)
...+..+..+.
T Consensus 281 ~a~~G~~l~~~ 291 (328)
T 3e70_C 281 DARGGAALSIS 291 (328)
T ss_dssp CSCCHHHHHHH
T ss_pred ccchhHHHHHH
Confidence 76665555554
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.59 E-value=0.00037 Score=71.15 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHH-HHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccC
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV-RSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~-~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 217 (467)
..++.||||||..... ... +..+. ..++..++.+++++ ++... +++...++.+.+.-.-+-+|+||+
T Consensus 183 ~~D~VIIDTpG~l~~~-----~~l---~~~L~~~~~~~~p~~vllVv-da~~g---~~~~~~~~~f~~~l~i~gvVlnK~ 250 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVD-----EAM---MDEIKQVHASINPVETLFVV-DAMTG---QDAANTAKAFNEALPLTGVVLTKV 250 (433)
T ss_dssp TCSEEEEECCCCCTTC-----HHH---HHHHHHHHHHSCCSEEEEEE-ETTBC---TTHHHHHHHHHHHSCCCCEEEECT
T ss_pred CCCEEEEECCCccccc-----HHH---HHHHHHHHHhhcCcceeEEe-ecchh---HHHHHHHHHHhccCCCeEEEEecC
Confidence 4689999999976421 111 22221 13355677665554 45432 345556665553222245689999
Q ss_pred cccCCCCcHHHH
Q 012279 218 DLMDKGTNALDV 229 (467)
Q Consensus 218 D~~~~~~~~~~~ 229 (467)
|....+..+..+
T Consensus 251 D~~~~~g~~l~i 262 (433)
T 2xxa_A 251 DGDARGGAALSI 262 (433)
T ss_dssp TSSSCCTHHHHH
T ss_pred CCCccHHHHHHH
Confidence 987655444444
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.53 E-value=0.00073 Score=65.42 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=43.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhc--CCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 216 (467)
.+++.|+||||..... . ..+.++. ..+. .++. +++|+++..+ ..+..++++.+... ...-+|+||
T Consensus 182 ~~dlvIiDT~G~~~~~-----~---~~~~el~-~~l~~~~~~~-~~lVl~at~~--~~~~~~~~~~~~~l-~~~giVltk 248 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKD-----P---QYIDELK-ETIPFESSIQ-SFLVLSATAK--YEDMKHIVKRFSSV-PVNQYIFTK 248 (296)
T ss_dssp GSSEEEEECCCCCTTS-----H---HHHHHHH-HHSCCCTTEE-EEEEEETTBC--HHHHHHHTTTTSSS-CCCEEEEEC
T ss_pred CCCEEEEeCCCCChhh-----H---HHHHHHH-HHHhhcCCCe-EEEEEECCCC--HHHHHHHHHHHhcC-CCCEEEEeC
Confidence 4689999999987532 1 1122222 2333 2444 4455555543 23344444444422 234567899
Q ss_pred CcccCCCCcHHHHhc
Q 012279 217 LDLMDKGTNALDVLE 231 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~ 231 (467)
.|....+..+..+..
T Consensus 249 ~D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 249 IDETTSLGSVFNILA 263 (296)
T ss_dssp TTTCSCCHHHHHHHH
T ss_pred CCcccchhHHHHHHH
Confidence 998876655566554
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.19 E-value=0.0022 Score=62.65 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=46.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHH---HHHHhh-cCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEe
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIES---MVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~---~~~~yi-~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 214 (467)
.+++.||||||..... ......+.. ++...+ ..++.+++ |+++.. .++++..++.+.+.-.-+=+|+
T Consensus 191 ~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vll-Vl~a~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLL-VIDATT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEE-EEEGGG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEE-EEECCC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 4689999999986531 111111211 111112 23565444 445553 3566666777765433444679
Q ss_pred ccCcccCCCCcHHHHh
Q 012279 215 TKLDLMDKGTNALDVL 230 (467)
Q Consensus 215 tK~D~~~~~~~~~~~l 230 (467)
||.|....+..+..+.
T Consensus 262 tk~d~~~~~g~~~~~~ 277 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIK 277 (320)
T ss_dssp ECGGGCSCTTHHHHHH
T ss_pred eCCCCCCchhHHHHHH
Confidence 9999876666555554
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.18 E-value=0.00096 Score=66.30 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=48.0
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
+..++|+.|+..... ..+.++..+...+++..+.+|+-++|+++ +.... +....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCH-HHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 457899999865321 00111222222344455667776666666 55432 23333444433235688999999988
Q ss_pred CCCCcHHHHh
Q 012279 221 DKGTNALDVL 230 (467)
Q Consensus 221 ~~~~~~~~~l 230 (467)
..+.....+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7776666654
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.05 E-value=0.00096 Score=64.74 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=45.9
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
+..++|+.|+...... .+.++..+...+++..+.+|+-++|+++ +.... +....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 4578999998653210 0111111122233334556775666666 55433 22233344432234688999999987
Q ss_pred CCCCcHHHHh
Q 012279 221 DKGTNALDVL 230 (467)
Q Consensus 221 ~~~~~~~~~l 230 (467)
..+.....+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 7666666554
No 228
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.04 E-value=0.0017 Score=65.89 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=45.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
..++.||||||..... ......+..+ .. +-.++.++|++ ++.. .++++..++.+.+.-..+-+|+||.|
T Consensus 180 ~~DvVIIDTaG~l~~d-----~~l~~el~~i-~~-~~~pd~vlLVv-Da~t---gq~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 180 ARDLILVDTAGRLQID-----EPLMGELARL-KE-VLGPDEVLLVL-DAMT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCSEEEEEE-EGGG---TTHHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHh-hh-ccCCceEEEEE-eccc---hHHHHHHHHHHHhcCCceEEEEeCcC
Confidence 4689999999976531 1111112111 12 22567565554 4443 35666667666543334667899999
Q ss_pred ccCCCCcHHHH
Q 012279 219 LMDKGTNALDV 229 (467)
Q Consensus 219 ~~~~~~~~~~~ 229 (467)
....+..+..+
T Consensus 249 ~~~~~g~alsi 259 (425)
T 2ffh_A 249 GDARGGAALSA 259 (425)
T ss_dssp GCSSCHHHHHH
T ss_pred CcccHHHHHHH
Confidence 87655544444
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.91 E-value=0.0026 Score=61.44 Aligned_cols=81 Identities=27% Similarity=0.357 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 218 (467)
.+++.||||||..... ......+..+.. .+ .++.++++ +++.. ..+.+..++.+.+.-...-+|+||.|
T Consensus 180 ~~D~viiDtpp~~~~d-----~~~~~~l~~~~~-~~-~~~~~~lv-~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID-----EPLMGELARLKE-VL-GPDEVLLV-LDAMT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp TCCEEEEECCCCSSCC-----HHHHHHHHHHHH-HH-CCSEEEEE-EEGGG---THHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred CCCEEEEeCCCCcccc-----HHHHHHHHHHhh-hc-CCCEEEEE-EeCCC---cHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 3689999999976431 111222222222 12 46756544 44443 35566666655442223446899999
Q ss_pred ccCCCCcHHHHh
Q 012279 219 LMDKGTNALDVL 230 (467)
Q Consensus 219 ~~~~~~~~~~~l 230 (467)
....+..+.++.
T Consensus 249 ~~~~~g~~~~~~ 260 (295)
T 1ls1_A 249 GDARGGAALSAR 260 (295)
T ss_dssp GCSSCHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 876665555554
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.71 E-value=0.00063 Score=66.13 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999999974
No 231
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.30 E-value=0.013 Score=59.61 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~ 59 (467)
..-.|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34457899999999999999775
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.03 E-value=0.01 Score=57.47 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~ 59 (467)
.++++|+.|||||||+|+|+
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999999
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.88 E-value=0.035 Score=49.64 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=37.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCC-----CCceEEE
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPT-----GERTFGV 213 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~-----~~rti~V 213 (467)
..+++|||+||... ..+...+..+|.+|+++.+...+ .....+.+.+... +.+..+|
T Consensus 75 ~yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~vv 136 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLD---FSAAGSVVTVLEAQAYSRKVEARFL 136 (206)
T ss_dssp TSSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTT---HHHHHHHHHHHTTSCGGGCCEEEEE
T ss_pred CCCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHH---HHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 36899999998653 12334455678666665543332 3333344444322 3466889
Q ss_pred eccCccc
Q 012279 214 LTKLDLM 220 (467)
Q Consensus 214 ltK~D~~ 220 (467)
+|++|..
T Consensus 137 ~N~~~~~ 143 (206)
T 4dzz_A 137 ITRKIEM 143 (206)
T ss_dssp ECSBCTT
T ss_pred EeccCCC
Confidence 9999954
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.53 E-value=0.0058 Score=59.10 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=41.3
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCccc
Q 012279 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (467)
Q Consensus 141 ~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 220 (467)
.+.++|+ ..+ .+.+.+.|++++|++|+++...+.+......-++...+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer-------------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHR-------------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCC-------------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccc-------------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 211 1344667999999766665443333222222223333333578999999999997
Q ss_pred CC
Q 012279 221 DK 222 (467)
Q Consensus 221 ~~ 222 (467)
+.
T Consensus 129 ~~ 130 (301)
T 1u0l_A 129 DE 130 (301)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 235
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.46 E-value=0.0053 Score=55.57 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=26.1
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCCC--Cccccccccccc
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRDF--LPRGSGIVTRRP 75 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~~--lP~~~~~~Tr~p 75 (467)
..|+++|+.|||||||+++|.+..- +-.+...+||.|
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 3589999999999999999997521 112233456655
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.33 E-value=0.0071 Score=54.91 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
--.|+|+|++|||||||++.|.|.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999986
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.33 E-value=0.0073 Score=53.65 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.0071 Score=53.59 Aligned_cols=22 Identities=9% Similarity=0.508 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|+.|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.23 E-value=0.012 Score=58.35 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999974
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.22 E-value=0.0073 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999984
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.12 E-value=0.0075 Score=54.03 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=25.7
Q ss_pred EEEECCCCCcHHHHHHHhhCCC--CCccccccccccc
Q 012279 41 VAVVGGQSSGKSSVLESVVGRD--FLPRGSGIVTRRP 75 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~~--~lP~~~~~~Tr~p 75 (467)
|+|+|+.|||||||+++|+... -+......+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998531 1233444566655
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.08 E-value=0.0083 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999996
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.05 E-value=0.01 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|.+||||||+++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999996
No 244
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.02 E-value=0.013 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999974
No 245
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.99 E-value=0.014 Score=55.41 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999974
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.99 E-value=0.012 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|+.||||||+++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999986
No 247
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.97 E-value=0.013 Score=55.86 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999974
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.96 E-value=0.0096 Score=53.45 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.96 E-value=0.013 Score=55.24 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
No 250
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.96 E-value=0.014 Score=56.28 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=22.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|+.|||||||+|+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 368999999999999999999975
No 251
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.93 E-value=0.02 Score=56.82 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc---------cccHHHHHHHHHhCC----
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVDP---- 205 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~l~~~~d~---- 205 (467)
...+.++||||-.+ .+.++..|.++++++|+++...+.| -.-.+++.+...+..
T Consensus 200 ~~~l~i~Dt~Gq~~-------------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRS-------------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhh-------------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 46789999999754 3667888999999887777655421 112233444444322
Q ss_pred CCCceEEEeccCcccC
Q 012279 206 TGERTFGVLTKLDLMD 221 (467)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (467)
.+.++|+|+||.|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 3689999999999863
No 252
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.91 E-value=0.016 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.89 E-value=0.013 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999974
No 254
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.89 E-value=0.015 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 255
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.85 E-value=0.015 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999974
No 256
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.80 E-value=0.014 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.77 E-value=0.011 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++|+|+.|||||||++.|.|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999999963
No 258
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.74 E-value=0.016 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.74 E-value=0.012 Score=52.40 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999986
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.74 E-value=0.013 Score=54.00 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999974
No 261
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.71 E-value=0.017 Score=54.47 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999974
No 262
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.67 E-value=0.018 Score=54.59 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999974
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.65 E-value=0.013 Score=53.80 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 264
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.64 E-value=0.018 Score=54.23 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=24.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (467)
.++++|+.|||||||++.|.|.. |-..|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 47899999999999999999974 33345444
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.59 E-value=0.017 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|+.|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999974
No 266
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.59 E-value=0.016 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|.|+++|..|||||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4688999999999999999999975
No 267
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.59 E-value=0.033 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....|+|+|.++||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999875
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.58 E-value=0.017 Score=53.80 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 269
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.58 E-value=0.017 Score=57.36 Aligned_cols=30 Identities=20% Similarity=0.545 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (467)
.++|+|+.||||||++++|+|. +|...|.+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I 206 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRLI 206 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceEE
Confidence 5999999999999999999996 34344443
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.58 E-value=0.018 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999998664
No 271
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.57 E-value=0.015 Score=57.07 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=24.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (467)
.++|+|+.|||||||+++|+|.. |...|.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~--~~~~g~i 202 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI--PKEERII 202 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS--CTTSCEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--cCCCcEE
Confidence 58999999999999999999963 3344443
No 272
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.55 E-value=0.019 Score=54.81 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999974
No 273
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.52 E-value=0.019 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999973
No 274
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.50 E-value=0.02 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999974
No 275
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.41 E-value=0.02 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999974
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.39 E-value=0.02 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999974
No 277
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=94.38 E-value=0.022 Score=56.31 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=48.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCccc---------ccHHHHHHHHHhCC----
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDP---- 205 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~---- 205 (467)
...+.++||+|-.+ .+.++..|.++++++|+++...+.|- .-.+++.+...+..
T Consensus 192 ~~~l~iwDt~GQe~-------------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRS-------------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchh-------------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46789999999654 35678889999998888776555221 12334445544432
Q ss_pred CCCceEEEeccCcccC
Q 012279 206 TGERTFGVLTKLDLMD 221 (467)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (467)
.+.++|+|+||.|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 3689999999999863
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.33 E-value=0.017 Score=60.03 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcccccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (467)
.|+|+|+.||||||++++|+|. +|.+.+.+|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3999999999999999999985 455555544
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.33 E-value=0.017 Score=50.21 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999973
No 280
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.22 E-value=0.022 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999974
No 281
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.21 E-value=0.019 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.+||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999875
No 282
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.20 E-value=0.013 Score=56.60 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 168 SMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 168 ~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+.+.|+.+.|.+++++...+.++.....-++...+...+.+.++|+||+|+.++
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 3455689999965555443333333332222333333357899999999999865
No 283
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.18 E-value=0.016 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|+.|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.15 E-value=0.02 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
..|+++|.+||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999863
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.13 E-value=0.019 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++|+|+.||||||++++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999995
No 286
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.13 E-value=0.048 Score=52.08 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 166 i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
..+.+.+++.++|. |+.|++|........ ..+.+.+ .+.+.++|+||+|+.+.
T Consensus 13 a~~~~~~~l~~aDv-Vl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 13 ARREVTEKLKLIDI-VYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHHGGGCSE-EEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHhhCCE-EEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 35678889999995 555556655443321 2233333 46899999999999874
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.12 E-value=0.031 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhh---CCCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVV---GRDF 63 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~---G~~~ 63 (467)
...|+++|.+||||||+++.|. |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4579999999999999999999 9753
No 288
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.08 E-value=0.025 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999974
No 289
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.07 E-value=0.05 Score=53.35 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=48.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---------cccccHHHHHHHHHhC----
Q 012279 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---------QDIATSDAMKLAREVD---- 204 (467)
Q Consensus 138 ~~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~l~~~~d---- 204 (467)
+...+.++||+|-.+ .+.++..|.++++++|+++.-.. ..-.-.+++.+...+.
T Consensus 159 ~~v~l~iwDtaGQe~-------------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQRS-------------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSCHH-------------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCccc-------------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 346899999999644 58889999999998887775441 1111223344444332
Q ss_pred CCCCceEEEeccCcccC
Q 012279 205 PTGERTFGVLTKLDLMD 221 (467)
Q Consensus 205 ~~~~rti~VltK~D~~~ 221 (467)
..+.++++|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24679999999999874
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.03 E-value=0.021 Score=55.26 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999985
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.99 E-value=0.03 Score=48.31 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.8
Q ss_pred CeEEEECCCCCcHHHHHHHh
Q 012279 39 PSVAVVGGQSSGKSSVLESV 58 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL 58 (467)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.94 E-value=0.018 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|+.|||||||++.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.92 E-value=0.023 Score=50.41 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.+||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.90 E-value=0.023 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.+||||||+++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 295
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.83 E-value=0.013 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+.|+|+|..+||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 296
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.72 E-value=0.036 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCcc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~ 66 (467)
.++++|+.|||||||++.|.|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 57899999999999999999984 64
No 297
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.72 E-value=0.036 Score=50.43 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCccccc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (467)
.++++|+.+||||||++.|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 589999999999999999999544444443
No 298
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.71 E-value=0.048 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+|+|..+|||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 299
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.62 E-value=0.026 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.+++||+.|||||||++.|+|..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999974
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.56 E-value=0.029 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|.+||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.55 E-value=0.039 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.50 E-value=0.03 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|..+|||||+++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999985
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.50 E-value=0.029 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+|+|+.|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5899999999999999999985
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.50 E-value=0.036 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....|+++|.+||||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4456999999999999999999864
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.48 E-value=0.024 Score=52.19 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=15.2
Q ss_pred eEEEECCCCCcHHHHHHHhh-CC
Q 012279 40 SVAVVGGQSSGKSSVLESVV-GR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~-G~ 61 (467)
.|+++|+.|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 86
No 306
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.46 E-value=0.13 Score=46.83 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=51.2
Q ss_pred cEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccc-cHHHH-HHHHHhCC----CCCceEEEec
Q 012279 142 LTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSDAM-KLAREVDP----TGERTFGVLT 215 (467)
Q Consensus 142 ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~-~~~~l-~l~~~~d~----~~~rti~Vlt 215 (467)
+-....|| +...+||. .++.++++|.++.|++|++|+++..+.. ..+.+ ++.+.+++ .+.+.++..|
T Consensus 98 ~~~~~~~~--~~~~GGQ~-----klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 98 MFSRHNEG--DDQQGSRY-----SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp --------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred cccccCCC--ccccCcHH-----HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 34445666 33344553 3789999999999988888877655322 22222 12222332 3568888889
Q ss_pred cC-cccCCCC--cHHHHhcCcccccCCCeE--EEEeCChhhhccCccHH
Q 012279 216 KL-DLMDKGT--NALDVLEGRSYRLQHPWV--GIVNRSQADINRNIDMI 259 (467)
Q Consensus 216 K~-D~~~~~~--~~~~~l~~~~~~l~lg~~--~V~~~s~~~~~~~~~~~ 259 (467)
|. |+...-+ +..+.+.-.. +...|+ +..+.+++++.++.+++
T Consensus 171 KqqDlp~Ams~~EI~e~L~L~~--l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 171 ISQGDVKRMPCFYLAHELHLNL--LNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp ESSTTSCBCCHHHHHHHTTGGG--GCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred CCcCccCCCCHHHHHHHcCCcC--CCCCEEEEEeECCCCcCHHHHHHHH
Confidence 96 5632211 2233332112 246887 45556666666555544
No 307
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.43 E-value=0.049 Score=53.17 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecC---------CcccccHHHHHHHHHhCC----
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA---------NQDIATSDAMKLAREVDP---- 205 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a---------~~d~~~~~~l~l~~~~d~---- 205 (467)
...+.++||.|-.+ .+.++..|.++++++|+++.-. +..-.-.+++.+...+..
T Consensus 166 ~v~l~iwDtgGQe~-------------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRS-------------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHH-------------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchh-------------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 46789999999644 5778889999999888777322 111112334455554432
Q ss_pred CCCceEEEeccCcccC
Q 012279 206 TGERTFGVLTKLDLMD 221 (467)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (467)
.+.++++|+||+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 3578999999999874
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.39 E-value=0.03 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999985
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.38 E-value=0.035 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+.|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999863
No 310
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.34 E-value=0.035 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999974
No 311
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.24 E-value=0.038 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....+|+|+.+|||||+++||.+.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999874
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.13 E-value=0.055 Score=47.55 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|.|+++|.+|||||||++.|++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999864
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.01 E-value=0.039 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|..||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999875
No 314
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.96 E-value=0.038 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhh---CCCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVV---GRDF 63 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~---G~~~ 63 (467)
-..|+++|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 4579999999999999999999 8753
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.94 E-value=0.039 Score=51.27 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|+.+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.93 E-value=0.056 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999975
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.92 E-value=0.052 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|..||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.92 E-value=0.052 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999985
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.83 E-value=0.052 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47999999999999999999974
No 320
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.81 E-value=0.039 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++|+|+.|||||||++.|.|..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999974
No 321
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=92.81 E-value=0.082 Score=53.09 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc---------cccHHHHHHHHHhC----C
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVD----P 205 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~l~~~~d----~ 205 (467)
...+.|+||+|-.+ .+.++..|.++++++|+++.-.+-| -.-.++..+...+. .
T Consensus 216 ~v~l~iwDtaGQe~-------------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRD-------------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGG-------------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhh-------------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 36789999999755 3667889999999888777655411 11223344444442 2
Q ss_pred CCCceEEEeccCcccC
Q 012279 206 TGERTFGVLTKLDLMD 221 (467)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (467)
...++|+|+||+|+..
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 3578999999999853
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.80 E-value=0.045 Score=49.06 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|+++|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999864
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.78 E-value=0.044 Score=49.11 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+|+|..+|||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 324
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.77 E-value=0.052 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999974
No 325
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.68 E-value=0.055 Score=46.34 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~ 59 (467)
.+..+|+|+.+|||||+++||.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999986
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.65 E-value=0.054 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.++|||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999985
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.63 E-value=0.044 Score=55.44 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+|+|+.||||||++++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 328
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.63 E-value=0.056 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999999974
No 329
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.62 E-value=0.057 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999974
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.59 E-value=0.051 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999974
No 331
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.58 E-value=0.045 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 332
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.53 E-value=0.059 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47999999999999999999975
No 333
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.51 E-value=0.043 Score=48.18 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.-++++|++|+|||||+.+|.|.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 334
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.46 E-value=0.06 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999999974
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.36 E-value=0.046 Score=52.83 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 336
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.35 E-value=0.065 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999974
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.32 E-value=0.048 Score=46.74 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-..++++|++++|||+|++++.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999985
No 338
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.30 E-value=0.036 Score=53.87 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
..|.++|+|..||||||++|.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999999864
No 339
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.26 E-value=0.07 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999853
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.22 E-value=0.056 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999986
No 341
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.12 E-value=0.074 Score=46.74 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 342
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.11 E-value=0.065 Score=47.13 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.11 E-value=0.072 Score=49.03 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.++++|+.|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999994
No 344
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.10 E-value=0.053 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58999999999999999999974
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.95 E-value=0.096 Score=46.21 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+.|+++|.++|||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998653
No 346
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.91 E-value=0.09 Score=47.00 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|.+||||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.90 E-value=0.08 Score=46.48 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.1
Q ss_pred CeEEEECCCCCcHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~ 59 (467)
|.|+++|.+||||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999998885
No 348
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=91.90 E-value=0.064 Score=52.99 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=45.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCC---------cccccHHHHHHHHHhCC----
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---------QDIATSDAMKLAREVDP---- 205 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~l~~~~d~---- 205 (467)
...+.++||+|-.+ .+.+...|.++++++|+++.-.. ..-.-.++..+...+..
T Consensus 182 ~v~l~iwDtaGQe~-------------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-------------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTT-------------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchh-------------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 46789999999755 36678889999998877765430 11112233444444322
Q ss_pred CCCceEEEeccCcccC
Q 012279 206 TGERTFGVLTKLDLMD 221 (467)
Q Consensus 206 ~~~rti~VltK~D~~~ 221 (467)
...++|+|.||+|+.+
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3679999999999864
No 349
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.87 E-value=0.091 Score=46.08 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~ 59 (467)
.+.|+++|.++|||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999995
No 350
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.78 E-value=0.086 Score=46.24 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~ 59 (467)
.|+++|.++|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 351
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.77 E-value=0.083 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~ 59 (467)
..+-.+|+|+.||||||++++|+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999998
No 352
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.76 E-value=0.089 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
+.|+++|.++|||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 353
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.61 E-value=0.091 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|++.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.59 E-value=0.072 Score=51.84 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|++|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.57 E-value=0.1 Score=46.46 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.55 E-value=0.08 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 357
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.55 E-value=0.078 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999963
No 358
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.55 E-value=0.052 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999974
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.52 E-value=0.097 Score=47.23 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~ 59 (467)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 360
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.49 E-value=0.1 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~ 59 (467)
..+.|+++|.++|||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 361
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.48 E-value=0.1 Score=46.09 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~ 59 (467)
..+.|+++|.++|||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999986
No 362
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.36 E-value=0.071 Score=54.62 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.-+.++|+|+.|||||||++.|.|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45689999999999999999999974
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.30 E-value=0.1 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.17 E-value=0.11 Score=46.90 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.17 E-value=0.11 Score=44.83 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
+.|+++|.++|||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998853
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.16 E-value=0.12 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 367
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.15 E-value=0.098 Score=50.56 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHhhcCCCeEEEEEecCC-cccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 170 VRSYVEKPNSVILAISPAN-QDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 170 ~~~yi~~~~~iIL~V~~a~-~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
++..+.+.|.+ +.|+++. .++.....-+++..+...+.+.++|+||+|+.++.
T Consensus 80 ~R~~~anvD~v-~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 80 IRPPICNVDQA-VLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTTEECCCEE-EEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred hHHHHHhCCEE-EEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 33457888954 4555565 44433322223333345689999999999999764
No 368
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.09 E-value=0.087 Score=49.98 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHhhCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~ 61 (467)
++++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 369
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.07 E-value=0.15 Score=50.54 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+.++++...|.+..+ +++.|+++.. . .......++++.. +.++++|+||+|+.+..
T Consensus 57 e~f~~~l~~i~~~~~-~il~VvD~~d-~-~~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDA-LVVKIVDIFD-F-NGSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCC-EEEEEEETTS-H-HHHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCc-EEEEEEECCC-C-cccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 446778888888877 4555555543 2 1222222333322 68899999999998754
No 370
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.06 E-value=0.14 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+..++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999874
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.04 E-value=0.11 Score=45.70 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.03 E-value=0.094 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 373
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.92 E-value=0.23 Score=48.85 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+.|+++|.+|+||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999988863
No 374
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.90 E-value=0.12 Score=45.44 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~ 59 (467)
.|+++|.++|||||+.+.|.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 375
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.86 E-value=0.15 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|..|||||||++.|.|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 376
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.82 E-value=0.097 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHhhCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~ 61 (467)
++++|++|+|||||+++|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999975
No 377
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.78 E-value=0.14 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999974
No 378
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.78 E-value=0.1 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 379
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.74 E-value=0.12 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 380
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.67 E-value=0.29 Score=46.65 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
-|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.66 E-value=0.054 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.66 E-value=0.1 Score=47.26 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++++|++|||||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999965
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.63 E-value=0.13 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
.+.|+++|.++|||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 384
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.60 E-value=0.13 Score=45.20 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.+||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.59 E-value=0.11 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 386
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.50 E-value=0.13 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|+|..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999974
No 387
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.44 E-value=0.14 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
....|+++|.++|||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999973
No 388
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.43 E-value=0.14 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45699999999999999999864
No 389
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.39 E-value=0.17 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999973
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.27 E-value=0.25 Score=45.97 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 391
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.15 E-value=0.16 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~ 59 (467)
..+-.+|+|+.+|||||+++||.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 33467999999999999999986
No 392
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.15 E-value=0.14 Score=46.17 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 393
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.08 E-value=0.11 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.++|+|++|+|||||+..|.|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 394
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.07 E-value=0.14 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999974
No 395
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.07 E-value=0.37 Score=41.62 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.+.++++|++|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998753
No 396
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.06 E-value=0.16 Score=45.36 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.++|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999863
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.01 E-value=0.15 Score=46.05 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|..+|||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 398
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.01 E-value=0.17 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|+++|.++|||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999873
No 399
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.98 E-value=0.17 Score=45.79 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|+++|.++|||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 400
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.96 E-value=0.13 Score=44.81 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=15.2
Q ss_pred CeEEEECCCCCcHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~ 59 (467)
..|+++|.++|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 401
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.95 E-value=0.12 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
-.++++|+.|||||||+++|.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 458999999999999999999963
No 402
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.91 E-value=0.15 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 403
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.90 E-value=0.13 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 48999999999999999999974
No 404
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.90 E-value=0.16 Score=45.12 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....|+++|.++|||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3456999999999999999999854
No 405
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.89 E-value=1.1 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|.+.|+||+|||++..||.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999999864
No 406
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.87 E-value=0.14 Score=44.88 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
+.|+++|.++|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 407
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.87 E-value=0.16 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999974
No 408
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.82 E-value=0.14 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 48999999999999999999974
No 409
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.76 E-value=0.13 Score=48.50 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHhhCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~ 61 (467)
|+++|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 410
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=89.75 E-value=0.55 Score=44.81 Aligned_cols=107 Identities=12% Similarity=0.155 Sum_probs=56.3
Q ss_pred eCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcc-cccHHHHH-HHHHhC----CCCCceEEEecc-Cc
Q 012279 146 DLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDAMK-LAREVD----PTGERTFGVLTK-LD 218 (467)
Q Consensus 146 DtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d-~~~~~~l~-l~~~~d----~~~~rti~VltK-~D 218 (467)
-+|| +...+||.. ++.+.++|.++.|++|+||+++..+ +...+.+. +.+.++ ..+.+.++..|| -|
T Consensus 187 ~~~~--~~~~GGQ~~-----lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQD 259 (312)
T 3l2o_B 187 HNEG--DDQQGSRYS-----VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQG 259 (312)
T ss_dssp ------------CCC-----CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESST
T ss_pred cCCC--CcCCCCHHH-----HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccc
Confidence 4466 333456654 5899999999999888877766553 22222222 212222 246788888897 47
Q ss_pred ccCCCC--cHHHHhcCcccccCCCeE--EEEeCChhhhccCccHHHH
Q 012279 219 LMDKGT--NALDVLEGRSYRLQHPWV--GIVNRSQADINRNIDMIVA 261 (467)
Q Consensus 219 ~~~~~~--~~~~~l~~~~~~l~lg~~--~V~~~s~~~~~~~~~~~~~ 261 (467)
+...-+ +..+.+.-.. +...|+ +..+.+++++.++.+++..
T Consensus 260 lp~Ams~~EI~e~L~L~~--l~r~W~Iq~csA~tGeGL~EGldWL~~ 304 (312)
T 3l2o_B 260 DVKRMPCFYLAHELHLNL--LNHPWLVQDTEAETLTGFLNGIEWILE 304 (312)
T ss_dssp TSCBCCHHHHHHHTTGGG--GCSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCcc--CCCcEEEEecccCCCcCHHHHHHHHHH
Confidence 643222 2223332112 246787 4566777777766666543
No 411
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.72 E-value=0.19 Score=44.80 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
|.|++.|.++|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 412
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.71 E-value=0.17 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|+|+|.++|||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999863
No 413
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.61 E-value=0.14 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999999974
No 414
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.55 E-value=0.14 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999999974
No 415
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.52 E-value=0.15 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.42 E-value=0.15 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
-..|+++|..+|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.26 E-value=0.15 Score=50.80 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 418
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.14 E-value=2 Score=47.79 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=18.0
Q ss_pred eEEEECCCCCcHHHHHHHh
Q 012279 40 SVAVVGGQSSGKSSVLESV 58 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL 58 (467)
.++++|+.+|||||+++.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.09 E-value=0.22 Score=45.36 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 420
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.06 E-value=0.21 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|++.|.++|||||+...|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999963
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.05 E-value=0.21 Score=43.01 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~ 59 (467)
...|++.|.++|||||+-..|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999985
No 422
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.90 E-value=0.17 Score=45.59 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.+||||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.89 E-value=0.21 Score=46.68 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+|+|.++||||||-.+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999974
No 424
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.88 E-value=0.17 Score=45.43 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.++++|++++|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999998
No 425
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.74 E-value=0.19 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~ 59 (467)
+..-.+++|+.+|||||+++||.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33457899999999999999985
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.72 E-value=0.18 Score=46.08 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLP 65 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP 65 (467)
.++++|++++|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 58999999999999999999853343
No 427
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.67 E-value=0.39 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|.++|.|++|+||||+++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.65 E-value=0.37 Score=43.62 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|++.|++|+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888874
No 429
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.57 E-value=0.23 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|..+|||||+.+.|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 430
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.42 E-value=0.63 Score=39.08 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|.+.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 431
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.38 E-value=0.24 Score=44.90 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.3
Q ss_pred CeEEEECCCCCcHHHHHHHhh
Q 012279 39 PSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~ 59 (467)
..|+++|.++|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.36 E-value=0.3 Score=44.77 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|+++|.++|||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 433
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.25 E-value=0.25 Score=45.46 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|++.|.++|||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 434
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.19 E-value=0.23 Score=52.58 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHhhCCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~~ 62 (467)
++++|..|||||||++.|.|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6999999999999999999974
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.18 E-value=0.19 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 436
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.01 E-value=0.23 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
.....+++|+.+||||||++||..
T Consensus 23 ~~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCCcEEEECCCCCcHHHHHHHHHH
Confidence 344789999999999999999984
No 437
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=87.80 E-value=0.23 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+....+++|+.++||||++++|.+.
T Consensus 25 ~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCChhHHHHHHHHh
Confidence 3446899999999999999999863
No 438
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.75 E-value=1 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.2
Q ss_pred CCCe-EEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPS-VAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~-IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+ |.+.|+||+|||++..|+.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444 999999999999999999863
No 439
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.75 E-value=0.06 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHhhCCC
Q 012279 41 VAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 41 IvvvG~~ssGKSSllnaL~G~~ 62 (467)
++|+|+.+||||||+++|.|..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999999964
No 440
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.67 E-value=0.091 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....++++|+.|||||||+++|.+.
T Consensus 59 ~~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 59 GGGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp CSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3347999999999999999999764
No 441
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.56 E-value=0.22 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|.++++|++|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999883
No 442
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.30 E-value=0.31 Score=45.28 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+|.|.++|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 443
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.28 E-value=0.22 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.+||||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999964
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.27 E-value=0.34 Score=43.80 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|+|+|||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988853
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.23 E-value=0.35 Score=44.63 Aligned_cols=22 Identities=41% Similarity=0.392 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhh
Q 012279 38 LPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~ 59 (467)
...|+++|.++|||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999998
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.13 E-value=0.31 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
....|+++|.++|||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 447
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=86.90 E-value=0.28 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeEEEECCCCCcHHHHHHHhhCCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
...+++|+.+||||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 467999999999999999999864
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.88 E-value=0.32 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 449
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.80 E-value=0.38 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.0
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
.+.|+++|+|+|||+|.-..|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34467799999999999988874
No 450
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.77 E-value=0.27 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|+++|++|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 451
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.67 E-value=1.1 Score=39.53 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.-|++.|++|+|||+++.+|.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999863
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.55 E-value=0.25 Score=46.67 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.++|+|++|+|||||+..|.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 453
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.52 E-value=0.66 Score=44.77 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+.|++.|++|+|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4556999999999999999999753
No 454
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.52 E-value=0.37 Score=45.75 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~ 59 (467)
.|+|+|.++|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999997
No 455
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.37 E-value=0.75 Score=41.18 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
-+++.|++|+|||+++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 456
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=86.34 E-value=0.32 Score=48.10 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHhh
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~ 59 (467)
+..-.+++|+.||||||+|+||.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999999985
No 457
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=86.31 E-value=0.43 Score=47.22 Aligned_cols=54 Identities=20% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 166 i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
++++..+|...++ +|+.|+++.... .+-.-.+.+.+. +.++++|+||+|+.+..
T Consensus 61 f~~~L~~~~~~~~-lil~VvD~~d~~-~s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 61 FLSMLHRIGESKA-LVVNIVDIFDFN-GSFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHHCC-EEEEEEETTCSG-GGCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHhhccCc-EEEEEEECCCCC-CchhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 5677777777777 455555554321 111111223332 68899999999998764
No 458
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.29 E-value=0.41 Score=43.29 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.+.+++.|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 459
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.20 E-value=0.24 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 460
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.04 E-value=0.36 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
+.|.++|+|.++||||+++++|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999985
No 461
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.96 E-value=0.43 Score=42.26 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.+.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998753
No 462
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.91 E-value=0.33 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.+|.+++.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999975
No 463
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.66 E-value=0.68 Score=38.83 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|.+.|++|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4889999999999999999865
No 464
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.66 E-value=0.35 Score=41.67 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.+.|+++|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 465
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=85.28 E-value=0.26 Score=46.30 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=32.6
Q ss_pred HHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCC
Q 012279 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (467)
Q Consensus 167 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 222 (467)
.+.+...+.+.|. |+.|++|........ ..+. +- +.+.++|+||+|+.+.
T Consensus 12 ~~~~~~~l~~~D~-vl~VvDar~P~~~~~-~~l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 12 KRQIKDLLRLVNT-VVEVRDARAPFATSA-YGVD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp THHHHHHHTTCSE-EEEEEETTSTTTTSC-TTSC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCE-EEEEeeCCCCCcCcC-hHHH--hc--CCCcEEEEECccCCCH
Confidence 4567888899995 555556654433321 1111 11 7899999999999975
No 466
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.26 E-value=0.28 Score=56.86 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCC-CCCceEEEecc
Q 012279 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP-TGERTFGVLTK 216 (467)
Q Consensus 164 ~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~-~~~rti~VltK 216 (467)
.+.-.+++..++++. ||+.+.|+..+-......+-+.++. ...+|++++++
T Consensus 1223 rQriaiARAllr~~~--ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPK--ILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HHHHHHHHHHHSCCS--EEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred HHHHHHHHHHHhCCC--EEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 345578999999998 5566776653323322233444544 35789998887
No 467
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.16 E-value=0.38 Score=44.91 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
....|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999998754
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.12 E-value=0.38 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.+++||+.|||||||++.|+|..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 58999999999999999999964
No 469
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.97 E-value=1.5 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|.+.|+||+|||++..|+.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4999999999999999999864
No 470
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.90 E-value=1.3 Score=40.78 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
.+-|++.|++|+|||++..+|..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999975
No 471
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.66 E-value=0.69 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|+++|++|+|||+|+++|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999975
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.47 E-value=0.32 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=17.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
..+.|+|.|+.+|||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 473
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.30 E-value=22 Score=34.02 Aligned_cols=24 Identities=4% Similarity=0.034 Sum_probs=20.2
Q ss_pred CCCe-EEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPS-VAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~-IvvvG~~ssGKSSllnaL~G 60 (467)
.+|. +.+.|++|+|||++..++..
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHH
Confidence 3454 89999999999999998874
No 474
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.25 E-value=2.5 Score=42.56 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-|.+.|+||+|||++..|+.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 4999999999999999999864
No 475
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.17 E-value=0.47 Score=54.87 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.+++||+.|||||||++.|.|..
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
No 476
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.86 E-value=0.28 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999986
No 477
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.71 E-value=0.76 Score=43.10 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..-+.+.|++|+|||++..++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345999999999999999999754
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.61 E-value=0.67 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
..|+++|.++|||||+.+.|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588899999999999999974
No 479
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.56 E-value=1.1 Score=42.10 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=38.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEeccCc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLTKLD 218 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK~D 218 (467)
.+++|||+|+..... . +......+|.+|+++.+.... ........+.+...+.+.+ +|+|++|
T Consensus 192 yD~VIIDtpp~~~~~-------d-------~~~l~~~aD~vilVv~~~~~~--~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-------D-------AQLFSKFTGNVVYVVNSENNN--KDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTCS-------H-------HHHHHHHHCEEEEEEETTSCC--HHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchHH-------H-------HHHHHHHCCEEEEEEeCCCCc--HHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 589999999976532 0 111223457666666554332 3334445555655677777 5689998
Q ss_pred cc
Q 012279 219 LM 220 (467)
Q Consensus 219 ~~ 220 (467)
..
T Consensus 256 ~~ 257 (271)
T 3bfv_A 256 KD 257 (271)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.40 E-value=0.52 Score=43.27 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
.|++.|..+|||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 481
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.34 E-value=1.7 Score=41.08 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.9
Q ss_pred CCeEEEECCCCCcHHHHHHHhhC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G 60 (467)
...|++.|++|+|||++..++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999987764
No 482
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.13 E-value=0.65 Score=41.79 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-.-|+++|++++|||+|...|..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999865
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.99 E-value=0.49 Score=52.70 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHhhCCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
.++++|+.|||||||++.|.|-.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999543
No 484
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.81 E-value=0.46 Score=50.92 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.0
Q ss_pred eEEEECCCCCcHHHHHHHhh
Q 012279 40 SVAVVGGQSSGKSSVLESVV 59 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~ 59 (467)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 48999999999999999765
No 485
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.81 E-value=0.52 Score=46.45 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=28.4
Q ss_pred hcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceEEEeccCcccCCC
Q 012279 174 VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (467)
Q Consensus 174 i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 223 (467)
+.+.|.++ +|++...++.....-+++......+.+.++|+||+|+.++.
T Consensus 128 ~anvD~v~-iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 128 AANIDQIV-IVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EECCCEEE-EEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HhcCCEEE-EEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 56788555 45555544333221122222223478889999999999754
No 486
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=82.61 E-value=4 Score=37.74 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=37.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEeccC
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLTKL 217 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK~ 217 (467)
..+++|||+|+-.... .+....+..+|.+|+++.+... +.....+..+.+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~~-------------~~~~~~~~~aD~viiv~~~~~~--s~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDA-------------PLTVMQDAKPTGVVVVSTPQEL--TAVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSSH-------------HHHHHHHHCCSEEEEEECSSSC--CHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCchH-------------HHHHHhhccCCeEEEEecCccc--hHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4789999999865311 0111112256766666654432 23344445555555567777 678999
Q ss_pred cc
Q 012279 218 DL 219 (467)
Q Consensus 218 D~ 219 (467)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 85
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.45 E-value=0.48 Score=46.53 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHhhCCCCCc
Q 012279 40 SVAVVGGQSSGKSSVLESVVGRDFLP 65 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~~~lP 65 (467)
.+.|+|++|||||||+..|++.-.+|
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~ 158 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLP 158 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 47899999999999999999864334
No 488
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.44 E-value=1.4 Score=41.77 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHhhCC
Q 012279 40 SVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G~ 61 (467)
-++++|++|+|||++..+|.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999875
No 489
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.43 E-value=0.61 Score=42.49 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.1
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.++++|++++|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999777754
No 490
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.27 E-value=1.4 Score=41.01 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..+.+.+.|++|+|||++..++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999999999753
No 491
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.26 E-value=0.76 Score=45.59 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhCCC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G~~ 62 (467)
..+.++|+|.++||||++++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999754
No 492
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.23 E-value=0.8 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCcHHHHHHHhhCC
Q 012279 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 38 lP~IvvvG~~ssGKSSllnaL~G~ 61 (467)
...++|.|++|+||||+++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999864
No 493
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.19 E-value=6.7 Score=36.10 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=48.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCC--CCceEEEecc
Q 012279 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPT--GERTFGVLTK 216 (467)
Q Consensus 139 ~~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~--~~rti~VltK 216 (467)
..+++|||+|+-.. ..+...+..+|.+|+++.+.... ......+.+.+... +.+..+|+|+
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s--~~~~~~~~~~l~~~~~~~~~~vv~N~ 206 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWA--VESLDLFNFFVRKLNLFLPIFLIITR 206 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTH--HHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHH--HHHHHHHHHHHHHHhccCCEEEEEec
Confidence 46899999998543 12445566788777766654332 22232333333332 3467799999
Q ss_pred CcccCCCCcHHHHhcCcccccCCCeEEEEeCC
Q 012279 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (467)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~lg~~~V~~~s 248 (467)
.+......+..+.+.. ...+.++++..
T Consensus 207 ~~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 207 FKKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp ECTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred ccCcchHHHHHHHHhc-----CcccceecCcH
Confidence 9543333344444432 34555666543
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.03 E-value=1.1 Score=43.62 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+.|+|+|+.+||||+|-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 495
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=82.01 E-value=1.7 Score=41.18 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=39.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHhhcCCCeEEEEEecCCcccccHHHHHHHHHhCCCCCceE-EEeccCc
Q 012279 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLTKLD 218 (467)
Q Consensus 140 ~~ltlVDtPGi~~~~~~~q~~~~~~~i~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK~D 218 (467)
.+++|||||+..... + +......+|.+|+++.+.... ........+.+...+.+.+ +|+|++|
T Consensus 202 yD~VIIDtpp~~~~~------d--------a~~l~~~aD~vllVv~~~~~~--~~~~~~~~~~l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 202 YDLVLIDTPPILAVT------D--------AAIVGRHVGTTLMVARYAVNT--LKEVETSLSRFEQNGIPVKGVILNSIF 265 (286)
T ss_dssp CSEEEEECCCTTTCT------H--------HHHHTTTCSEEEEEEETTTSB--HHHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred CCEEEEcCCCCcchH------H--------HHHHHHHCCeEEEEEeCCCCc--HHHHHHHHHHHHhCCCCEEEEEEcCcc
Confidence 589999999986532 0 223355678777766554432 2333334444544455555 5689998
Q ss_pred ccC
Q 012279 219 LMD 221 (467)
Q Consensus 219 ~~~ 221 (467)
...
T Consensus 266 ~~~ 268 (286)
T 3la6_A 266 RRA 268 (286)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 496
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=81.93 E-value=1 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHhhC
Q 012279 40 SVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 40 ~IvvvG~~ssGKSSllnaL~G 60 (467)
.++++|+.+|||||+|+.+.+
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHH
Confidence 589999999999999999864
No 497
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=81.92 E-value=0.69 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHhhC
Q 012279 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 37 ~lP~IvvvG~~ssGKSSllnaL~G 60 (467)
+.|.++|+|.++||||+++++|+-
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 498
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.88 E-value=0.69 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
+.|+|+|+.+||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36999999999999999998753
No 499
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=81.86 E-value=0.75 Score=41.73 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred CeEEEECCCCCcHHHHHHHhhC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVG 60 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G 60 (467)
.-|++.|..+|||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 500
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=81.80 E-value=0.73 Score=47.07 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHhhCC
Q 012279 39 PSVAVVGGQSSGKSSVLESVVGR 61 (467)
Q Consensus 39 P~IvvvG~~ssGKSSllnaL~G~ 61 (467)
..|+++|.++|||||+.+.|...
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
Done!